Query 042996
Match_columns 261
No_of_seqs 147 out of 667
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 11:44:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042996.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042996hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1666 V-SNARE [Intracellular 100.0 9.3E-43 2E-47 290.2 25.4 218 6-234 1-220 (220)
2 KOG3251 Golgi SNAP receptor co 99.8 2E-18 4.4E-23 145.2 23.2 206 13-234 4-212 (213)
3 PF03908 Sec20: Sec20; InterP 99.5 9.4E-13 2E-17 98.8 13.3 88 146-233 4-91 (92)
4 PF12352 V-SNARE_C: Snare regi 99.4 5.3E-12 1.1E-16 88.8 9.8 65 144-208 2-66 (66)
5 KOG3208 SNARE protein GS28 [In 99.2 4.1E-09 9E-14 89.1 21.6 209 7-231 4-229 (231)
6 PF05008 V-SNARE: Vesicle tran 99.2 2E-10 4.4E-15 83.5 11.4 78 17-99 1-78 (79)
7 KOG3202 SNARE protein TLG1/Syn 99.0 3.8E-07 8.1E-12 79.2 24.8 103 109-212 110-213 (235)
8 KOG0812 SNARE protein SED5/Syn 98.9 1.6E-06 3.4E-11 76.3 24.4 85 136-220 213-297 (311)
9 COG5074 t-SNARE complex subuni 98.8 2.6E-06 5.6E-11 72.9 22.5 90 146-235 181-273 (280)
10 KOG0810 SNARE protein Syntaxin 98.8 5.5E-06 1.2E-10 74.6 24.8 88 144-231 200-290 (297)
11 KOG0811 SNARE protein PEP12/VA 98.5 0.00024 5.2E-09 63.1 25.0 90 142-231 172-264 (269)
12 COG5325 t-SNARE complex subuni 98.0 0.0022 4.8E-08 56.5 21.0 90 142-231 187-278 (283)
13 PF09753 Use1: Membrane fusion 98.0 0.0041 9E-08 54.9 22.9 97 133-234 153-251 (251)
14 KOG0809 SNARE protein TLG2/Syn 98.0 0.0035 7.5E-08 55.8 20.7 74 139-212 207-280 (305)
15 smart00397 t_SNARE Helical reg 97.7 0.00043 9.4E-09 47.5 8.9 62 142-203 4-65 (66)
16 PF00957 Synaptobrevin: Synapt 97.6 0.0037 8E-08 46.2 13.3 82 150-231 3-85 (89)
17 KOG3385 V-SNARE [Intracellular 97.5 0.00076 1.6E-08 51.9 8.6 76 144-220 29-105 (118)
18 PF05739 SNARE: SNARE domain; 97.4 0.0033 7.2E-08 43.1 10.3 60 148-207 2-61 (63)
19 KOG3065 SNAP-25 (synaptosome-a 97.4 0.0016 3.5E-08 58.0 9.9 72 134-205 63-134 (273)
20 KOG3894 SNARE protein Syntaxin 97.0 0.12 2.6E-06 46.6 18.3 87 145-231 227-314 (316)
21 cd00193 t_SNARE Soluble NSF (N 96.8 0.013 2.8E-07 39.3 8.5 57 147-203 3-59 (60)
22 KOG0860 Synaptobrevin/VAMP-lik 96.7 0.065 1.4E-06 41.5 12.2 73 148-220 27-103 (116)
23 PRK10884 SH3 domain-containing 96.1 0.29 6.3E-06 42.0 14.0 88 145-236 109-196 (206)
24 PF04210 MtrG: Tetrahydrometha 94.6 0.44 9.6E-06 33.4 8.3 55 179-233 13-69 (70)
25 TIGR01149 mtrG N5-methyltetrah 94.2 0.71 1.5E-05 32.3 8.5 54 180-233 14-69 (70)
26 KOG1666 V-SNARE [Intracellular 93.7 4.2 9E-05 35.0 20.7 28 141-168 119-146 (220)
27 PRK01026 tetrahydromethanopter 93.6 0.9 2E-05 32.6 8.5 56 179-234 16-73 (77)
28 PF12273 RCR: Chitin synthesis 93.6 0.044 9.5E-07 43.5 1.9 34 212-245 1-35 (130)
29 KOG3065 SNAP-25 (synaptosome-a 93.5 0.4 8.7E-06 42.9 8.1 64 141-204 209-272 (273)
30 PF06008 Laminin_I: Laminin Do 93.0 6.1 0.00013 35.0 23.3 62 140-201 189-250 (264)
31 COG4064 MtrG Tetrahydromethano 92.9 1.2 2.5E-05 31.3 7.8 53 182-234 19-73 (75)
32 PF00957 Synaptobrevin: Synapt 91.0 4.8 0.0001 29.4 12.6 55 170-230 33-87 (89)
33 KOG3202 SNARE protein TLG1/Syn 90.0 13 0.00027 32.7 19.5 65 132-199 141-208 (235)
34 PF12911 OppC_N: N-terminal TM 89.9 0.42 9E-06 31.8 3.2 38 200-237 4-41 (56)
35 PF09889 DUF2116: Uncharacteri 89.6 1.2 2.5E-05 30.5 5.2 30 199-228 26-55 (59)
36 KOG0860 Synaptobrevin/VAMP-lik 88.7 9.8 0.00021 29.6 12.5 51 170-223 59-109 (116)
37 PF10779 XhlA: Haemolysin XhlA 88.3 7 0.00015 27.5 9.9 18 209-226 48-65 (71)
38 KOG2678 Predicted membrane pro 88.2 16 0.00035 31.6 17.5 79 158-236 163-242 (244)
39 PF07423 DUF1510: Protein of u 86.6 0.9 1.9E-05 39.3 3.9 32 205-236 7-38 (217)
40 PF05478 Prominin: Prominin; 86.5 43 0.00093 34.7 25.8 41 50-95 247-287 (806)
41 KOG0862 Synaptobrevin/VAMP-lik 86.3 13 0.00028 32.0 10.7 81 149-233 133-213 (216)
42 PHA03049 IMV membrane protein; 85.6 1.4 3.1E-05 30.5 3.7 25 221-245 10-34 (68)
43 PF01102 Glycophorin_A: Glycop 84.4 0.9 2E-05 35.7 2.7 22 214-235 69-90 (122)
44 PRK11637 AmiB activator; Provi 83.5 41 0.00089 31.9 22.8 79 8-97 47-125 (428)
45 PF02468 PsbN: Photosystem II 82.6 2 4.3E-05 27.4 3.2 29 216-244 9-37 (43)
46 PF07106 TBPIP: Tat binding pr 80.8 30 0.00064 28.4 10.9 83 6-92 77-162 (169)
47 KOG0810 SNARE protein Syntaxin 79.2 50 0.0011 30.0 17.9 58 47-104 87-149 (297)
48 PHA02650 hypothetical protein; 78.3 3.8 8.2E-05 29.5 3.8 17 221-237 60-76 (81)
49 COG3883 Uncharacterized protei 78.0 51 0.0011 29.4 17.1 50 145-194 153-202 (265)
50 PF00523 Fusion_gly: Fusion gl 77.5 1.7 3.6E-05 42.1 2.4 24 8-31 48-71 (490)
51 KOG0859 Synaptobrevin/VAMP-lik 76.8 5.9 0.00013 33.7 5.2 60 149-208 124-183 (217)
52 PF08058 NPCC: Nuclear pore co 76.6 5 0.00011 32.4 4.6 43 213-259 81-123 (144)
53 PF05961 Chordopox_A13L: Chord 76.5 4.5 9.9E-05 28.2 3.7 15 222-236 11-25 (68)
54 PF14362 DUF4407: Domain of un 76.0 59 0.0013 29.2 19.8 12 226-237 277-288 (301)
55 PHA02844 putative transmembran 75.8 4.3 9.3E-05 28.9 3.4 16 221-236 59-74 (75)
56 PRK13183 psbN photosystem II r 74.8 3 6.6E-05 26.8 2.3 27 218-244 14-40 (46)
57 PF05283 MGC-24: Multi-glycosy 74.5 3 6.5E-05 35.2 2.9 25 211-235 159-185 (186)
58 KOG0161 Myosin class II heavy 74.2 1.7E+02 0.0036 33.6 20.1 61 141-201 1855-1915(1930)
59 PF08802 CytB6-F_Fe-S: Cytochr 74.0 10 0.00022 23.6 4.4 33 203-236 5-37 (39)
60 PF06008 Laminin_I: Laminin Do 73.8 63 0.0014 28.5 20.2 60 142-201 184-243 (264)
61 PF12128 DUF3584: Protein of u 73.7 1.4E+02 0.0031 32.4 19.8 72 142-213 482-553 (1201)
62 PF12877 DUF3827: Domain of un 73.3 1.5 3.3E-05 43.3 1.0 35 209-243 266-303 (684)
63 PF11694 DUF3290: Protein of u 73.0 6.3 0.00014 32.1 4.3 42 203-244 7-49 (149)
64 PF04065 Not3: Not1 N-terminal 72.9 65 0.0014 28.2 12.0 53 13-65 6-65 (233)
65 CHL00020 psbN photosystem II p 72.6 3 6.5E-05 26.5 1.8 27 218-244 11-37 (43)
66 TIGR03510 XapX XapX domain. Th 72.3 6.3 0.00014 25.9 3.4 23 221-251 6-28 (49)
67 PF09403 FadA: Adhesion protei 71.7 48 0.001 26.2 11.7 91 4-102 23-113 (126)
68 KOG0811 SNARE protein PEP12/VA 70.8 79 0.0017 28.3 19.7 84 145-228 182-265 (269)
69 KOG0994 Extracellular matrix g 70.3 1.7E+02 0.0036 31.9 20.7 25 42-66 1546-1570(1758)
70 PRK07021 fliL flagellar basal 70.1 7.8 0.00017 31.8 4.4 25 212-236 17-42 (162)
71 PF06682 DUF1183: Protein of u 70.0 5.9 0.00013 36.3 3.9 18 218-235 160-177 (318)
72 PRK07718 fliL flagellar basal 69.4 8.4 0.00018 30.9 4.3 27 210-236 2-29 (142)
73 KOG4603 TBP-1 interacting prot 69.1 67 0.0015 26.8 11.9 24 74-97 151-174 (201)
74 PF15188 CCDC-167: Coiled-coil 68.3 45 0.00097 24.5 7.9 58 44-103 7-64 (85)
75 PF12777 MT: Microtubule-bindi 66.4 83 0.0018 29.0 10.9 67 141-207 226-292 (344)
76 PF12669 P12: Virus attachment 66.1 3.5 7.6E-05 28.0 1.3 16 221-236 7-23 (58)
77 PF12126 DUF3583: Protein of u 66.0 61 0.0013 29.4 9.3 59 3-66 1-59 (324)
78 PF12495 Vip3A_N: Vegetative i 65.0 47 0.001 26.2 7.5 84 135-218 44-127 (177)
79 KOG0250 DNA repair protein RAD 65.0 2E+02 0.0043 30.8 23.6 37 180-217 438-474 (1074)
80 PF09753 Use1: Membrane fusion 64.8 97 0.0021 27.1 10.8 47 180-226 190-238 (251)
81 PF04639 Baculo_E56: Baculovir 63.5 4.2 9E-05 36.5 1.6 24 213-236 280-303 (305)
82 PHA03240 envelope glycoprotein 63.0 7.3 0.00016 33.6 2.9 20 214-233 213-233 (258)
83 PHA02681 ORF089 virion membran 62.9 11 0.00025 27.4 3.4 23 211-233 5-27 (92)
84 PRK15374 pathogenicity island 62.8 1.6E+02 0.0036 29.0 21.7 51 44-96 150-200 (593)
85 PF13131 DUF3951: Protein of u 62.6 15 0.00032 24.2 3.6 28 221-248 15-42 (53)
86 PHA03099 epidermal growth fact 62.4 9.3 0.0002 30.3 3.1 28 218-245 110-137 (139)
87 PF01102 Glycophorin_A: Glycop 62.1 11 0.00023 29.7 3.5 32 213-245 72-103 (122)
88 PF00558 Vpu: Vpu protein; In 61.4 9.3 0.0002 27.8 2.8 20 214-233 6-25 (81)
89 PRK08455 fliL flagellar basal 61.3 9.2 0.0002 32.1 3.2 18 220-237 28-45 (182)
90 cd01324 cbb3_Oxidase_CcoQ Cyto 61.2 7.9 0.00017 25.2 2.2 12 220-231 21-32 (48)
91 PRK11677 hypothetical protein; 61.1 11 0.00023 30.2 3.4 25 213-237 3-27 (134)
92 PF15206 FAM209: FAM209 family 60.6 8.3 0.00018 30.9 2.6 26 221-246 44-70 (150)
93 KOG1693 emp24/gp25L/p24 family 60.6 59 0.0013 27.8 7.8 21 220-240 186-206 (209)
94 PRK11637 AmiB activator; Provi 60.5 1.5E+02 0.0033 28.0 22.9 18 81-98 102-119 (428)
95 PF10717 ODV-E18: Occlusion-de 60.3 21 0.00046 26.0 4.4 11 221-231 34-44 (85)
96 TIGR01478 STEVOR variant surfa 58.8 11 0.00024 33.9 3.4 16 221-236 272-287 (295)
97 PRK04778 septation ring format 58.8 1.9E+02 0.0042 28.6 19.7 25 38-65 278-302 (569)
98 PHA03049 IMV membrane protein; 58.7 15 0.00032 25.6 3.2 22 213-234 5-27 (68)
99 PF06024 DUF912: Nucleopolyhed 58.6 7.1 0.00015 29.5 1.9 16 221-236 72-87 (101)
100 TIGR00606 rad50 rad50. This fa 58.5 2.9E+02 0.0062 30.4 23.1 20 78-97 884-903 (1311)
101 PHA03030 hypothetical protein; 58.5 7.6 0.00017 29.4 2.0 24 213-236 3-26 (122)
102 PF08114 PMP1_2: ATPase proteo 58.3 11 0.00024 23.7 2.3 19 218-236 17-36 (43)
103 PHA02819 hypothetical protein; 58.1 16 0.00035 25.7 3.4 14 221-234 57-70 (71)
104 PF03962 Mnd1: Mnd1 family; I 57.5 1.1E+02 0.0023 25.8 9.1 64 38-101 65-129 (188)
105 PF10032 Pho88: Phosphate tran 57.4 14 0.0003 31.4 3.6 31 218-248 39-69 (192)
106 COG1722 XseB Exonuclease VII s 57.0 65 0.0014 23.4 6.6 56 9-64 11-67 (81)
107 PF05568 ASFV_J13L: African sw 56.6 13 0.00029 30.0 3.2 11 221-231 41-51 (189)
108 KOG4603 TBP-1 interacting prot 56.0 85 0.0018 26.2 7.8 59 42-103 86-144 (201)
109 PTZ00370 STEVOR; Provisional 55.5 12 0.00026 33.6 3.1 16 221-236 268-283 (296)
110 PF11395 DUF2873: Protein of u 54.8 25 0.00054 21.6 3.4 14 218-231 15-28 (43)
111 PRK06654 fliL flagellar basal 54.6 18 0.00039 30.4 3.8 22 213-234 36-58 (181)
112 PF06160 EzrA: Septation ring 54.4 2.3E+02 0.0049 28.1 19.4 27 37-66 273-299 (560)
113 PF05961 Chordopox_A13L: Chord 54.3 33 0.00071 24.0 4.4 24 213-236 5-28 (68)
114 PF06160 EzrA: Septation ring 54.3 2.3E+02 0.005 28.0 22.5 57 8-64 215-274 (560)
115 PF09125 COX2-transmemb: Cytoc 54.3 49 0.0011 20.3 5.1 14 212-225 15-28 (38)
116 PRK14068 exodeoxyribonuclease 54.1 78 0.0017 22.7 6.6 53 10-62 8-61 (76)
117 PF01519 DUF16: Protein of unk 53.0 91 0.002 23.7 7.0 38 171-208 60-97 (102)
118 COG4317 Uncharacterized protei 52.9 22 0.00048 25.9 3.5 9 244-252 23-31 (93)
119 KOG2150 CCR4-NOT transcription 52.8 2.5E+02 0.0053 27.9 16.3 28 37-64 37-64 (575)
120 PF06363 Picorna_P3A: Picornav 52.6 73 0.0016 23.7 6.2 39 198-237 55-95 (100)
121 PF15018 InaF-motif: TRP-inter 52.5 23 0.0005 22.0 3.1 23 213-235 10-32 (38)
122 PF10146 zf-C4H2: Zinc finger- 52.1 1.6E+02 0.0035 25.7 10.2 25 77-101 48-72 (230)
123 PRK14762 membrane protein; Pro 51.8 20 0.00043 20.0 2.4 9 212-220 2-10 (27)
124 PF14283 DUF4366: Domain of un 51.6 3.8 8.3E-05 35.5 -0.7 19 221-239 170-188 (218)
125 PTZ00208 65 kDa invariant surf 51.3 19 0.00041 34.0 3.7 34 204-237 378-413 (436)
126 PF07889 DUF1664: Protein of u 50.6 1.2E+02 0.0027 23.9 10.4 50 42-103 68-117 (126)
127 PF09789 DUF2353: Uncharacteri 49.7 2.1E+02 0.0046 26.3 10.6 62 42-103 93-154 (319)
128 TIGR01294 P_lamban phospholamb 49.6 67 0.0015 20.6 4.9 27 191-217 9-36 (52)
129 PF10498 IFT57: Intra-flagella 49.5 2.2E+02 0.0049 26.5 14.0 38 144-181 281-318 (359)
130 PF10883 DUF2681: Protein of u 49.5 25 0.00055 25.9 3.5 19 218-236 10-28 (87)
131 PF08317 Spc7: Spc7 kinetochor 49.0 2.1E+02 0.0046 26.1 15.0 26 42-67 75-100 (325)
132 PRK14064 exodeoxyribonuclease 48.9 96 0.0021 22.1 6.5 52 10-61 8-60 (75)
133 PF12273 RCR: Chitin synthesis 48.6 36 0.00077 26.7 4.5 35 216-250 9-43 (130)
134 PF13955 Fst_toxin: Toxin Fst, 48.6 40 0.00086 18.1 3.2 16 218-233 4-20 (21)
135 COG5074 t-SNARE complex subuni 48.6 1.9E+02 0.0041 25.5 17.9 38 143-180 192-229 (280)
136 KOG4684 Uncharacterized conser 48.6 25 0.00054 30.4 3.8 30 199-228 196-225 (275)
137 PF05557 MAD: Mitotic checkpoi 48.5 1.4E+02 0.0031 30.4 10.0 25 227-251 642-666 (722)
138 COG5325 t-SNARE complex subuni 48.3 2.1E+02 0.0045 25.8 11.5 66 145-210 197-262 (283)
139 PRK14067 exodeoxyribonuclease 48.3 1E+02 0.0022 22.3 6.7 53 9-61 8-61 (80)
140 PHA03097 C-type lectin-like pr 47.9 39 0.00084 27.5 4.8 37 213-249 13-49 (157)
141 PF11337 DUF3139: Protein of u 47.8 26 0.00057 25.4 3.4 9 212-220 5-13 (85)
142 PF06679 DUF1180: Protein of u 47.8 21 0.00045 29.6 3.1 21 216-236 99-119 (163)
143 PF02009 Rifin_STEVOR: Rifin/s 47.7 16 0.00035 33.2 2.7 7 9-15 51-57 (299)
144 PF06143 Baculo_11_kDa: Baculo 47.6 65 0.0014 23.6 5.3 17 188-204 20-36 (84)
145 COG4942 Membrane-bound metallo 47.2 2.2E+02 0.0047 27.2 10.1 66 143-208 38-103 (420)
146 PF12606 RELT: Tumour necrosis 47.1 24 0.00051 23.3 2.7 17 221-237 11-27 (50)
147 PHA02975 hypothetical protein; 46.8 31 0.00067 24.2 3.3 13 221-233 55-67 (69)
148 KOG3287 Membrane trafficking p 46.6 1.5E+02 0.0032 25.8 8.1 33 179-211 154-186 (236)
149 PF15106 TMEM156: TMEM156 prot 46.3 23 0.0005 30.4 3.2 25 212-236 175-200 (226)
150 PF11119 DUF2633: Protein of u 45.8 22 0.00047 24.3 2.4 28 212-239 11-39 (59)
151 PF12575 DUF3753: Protein of u 45.7 27 0.00059 24.8 3.0 6 227-232 65-70 (72)
152 PHA03164 hypothetical protein; 45.6 31 0.00066 24.8 3.2 11 221-231 70-80 (88)
153 TIGR01280 xseB exodeoxyribonuc 45.4 1E+02 0.0022 21.4 6.7 53 10-62 3-56 (67)
154 PF04272 Phospholamban: Phosph 45.3 60 0.0013 20.8 4.2 10 205-214 24-33 (52)
155 PRK14750 kdpF potassium-transp 45.2 43 0.00094 19.3 3.2 16 221-236 11-26 (29)
156 PF06696 Strep_SA_rep: Strepto 45.2 56 0.0012 18.3 4.2 19 79-97 2-20 (25)
157 PF08649 DASH_Dad1: DASH compl 44.7 73 0.0016 21.6 4.9 36 133-168 6-41 (58)
158 KOG0994 Extracellular matrix g 44.5 4.6E+02 0.01 28.7 22.2 37 172-208 1592-1628(1758)
159 PRK00977 exodeoxyribonuclease 44.1 1.2E+02 0.0026 21.8 6.5 52 10-61 12-64 (80)
160 PHA03054 IMV membrane protein; 44.0 34 0.00075 24.1 3.3 10 224-233 62-71 (72)
161 TIGR02680 conserved hypothetic 43.9 4.9E+02 0.011 28.9 21.7 28 173-200 356-383 (1353)
162 PF07235 DUF1427: Protein of u 43.9 20 0.00044 26.5 2.2 24 221-252 7-30 (90)
163 KOG4552 Vitamin-D-receptor int 43.9 1.9E+02 0.004 25.1 8.2 22 38-59 84-105 (272)
164 PF08372 PRT_C: Plant phosphor 43.7 1.5E+02 0.0032 24.4 7.5 27 177-203 65-91 (156)
165 PRK11519 tyrosine kinase; Prov 43.7 3.7E+02 0.0081 27.4 16.3 23 42-64 274-296 (719)
166 COG1580 FliL Flagellar basal b 43.5 37 0.0008 27.9 4.0 13 222-234 30-42 (159)
167 PHA02562 46 endonuclease subun 43.5 3.2E+02 0.0068 26.5 22.6 21 44-64 215-235 (562)
168 PF09889 DUF2116: Uncharacteri 43.0 69 0.0015 21.8 4.6 28 204-231 28-55 (59)
169 PF06103 DUF948: Bacterial pro 42.6 1.3E+02 0.0028 21.7 9.2 18 172-189 62-79 (90)
170 PRK14066 exodeoxyribonuclease 42.5 1.2E+02 0.0027 21.5 6.5 52 10-61 6-58 (75)
171 PF04906 Tweety: Tweety; Inte 42.3 2.8E+02 0.006 26.3 10.2 55 144-201 284-338 (406)
172 PF04799 Fzo_mitofusin: fzo-li 42.2 2E+02 0.0044 23.9 8.8 16 80-95 149-164 (171)
173 PF02038 ATP1G1_PLM_MAT8: ATP1 42.0 14 0.0003 24.3 1.0 14 219-232 24-37 (50)
174 PRK14069 exodeoxyribonuclease 41.9 1.4E+02 0.0031 22.3 6.6 52 10-61 10-62 (95)
175 PF06013 WXG100: Proteins of 1 41.9 1.1E+02 0.0024 20.8 8.9 60 42-101 11-70 (86)
176 COG0497 RecN ATPase involved i 41.9 1.5E+02 0.0033 29.4 8.5 31 38-68 303-337 (557)
177 TIGR02169 SMC_prok_A chromosom 41.8 4.5E+02 0.0098 27.8 24.2 29 173-201 464-492 (1164)
178 KOG3366 Mitochondrial F1F0-ATP 41.7 2E+02 0.0043 24.0 7.9 18 80-97 110-127 (172)
179 PHA02681 ORF089 virion membran 41.6 42 0.0009 24.5 3.5 29 217-250 7-35 (92)
180 PF02609 Exonuc_VII_S: Exonucl 41.3 1E+02 0.0022 20.1 6.8 46 13-58 4-50 (53)
181 PF04799 Fzo_mitofusin: fzo-li 41.0 1.7E+02 0.0038 24.3 7.5 49 47-104 118-166 (171)
182 TIGR03061 pip_yhgE_Nterm YhgE/ 40.7 50 0.0011 26.7 4.4 10 206-215 4-13 (164)
183 PF06295 DUF1043: Protein of u 40.6 22 0.00048 28.0 2.2 20 218-237 3-23 (128)
184 TIGR01069 mutS2 MutS2 family p 40.3 4E+02 0.0087 27.6 11.7 19 11-29 507-525 (771)
185 PF12998 ING: Inhibitor of gro 40.3 1.5E+02 0.0032 21.7 9.6 50 8-57 22-76 (105)
186 COG4068 Uncharacterized protei 40.3 88 0.0019 21.3 4.6 23 198-220 30-52 (64)
187 PLN03160 uncharacterized prote 40.2 9.3 0.0002 33.0 -0.0 33 206-238 32-66 (219)
188 PRK02224 chromosome segregatio 40.1 4.4E+02 0.0096 27.3 21.9 35 168-202 650-684 (880)
189 PRK04778 septation ring format 40.1 3.8E+02 0.0083 26.5 22.2 57 8-64 219-278 (569)
190 PF03938 OmpH: Outer membrane 39.9 1.9E+02 0.0041 22.9 7.9 58 8-65 43-103 (158)
191 PF00430 ATP-synt_B: ATP synth 39.8 20 0.00043 27.6 1.8 7 228-234 14-20 (132)
192 KOG4025 Putative apoptosis rel 39.8 2.2E+02 0.0048 23.7 9.1 88 9-100 87-175 (207)
193 PF11446 DUF2897: Protein of u 39.6 24 0.00051 23.7 1.9 7 221-227 15-21 (55)
194 PF07139 DUF1387: Protein of u 39.3 2.6E+02 0.0057 25.5 9.0 18 82-99 243-260 (302)
195 PF04478 Mid2: Mid2 like cell 38.6 6.4 0.00014 32.1 -1.2 23 221-243 62-84 (154)
196 PHA02902 putative IMV membrane 38.5 82 0.0018 21.9 4.4 20 214-233 8-27 (70)
197 PF05454 DAG1: Dystroglycan (D 38.3 10 0.00023 34.2 0.0 12 221-232 160-171 (290)
198 PF02009 Rifin_STEVOR: Rifin/s 38.0 23 0.00049 32.2 2.1 6 228-233 276-281 (299)
199 TIGR02588 conserved hypothetic 38.0 47 0.001 26.1 3.6 26 213-238 5-31 (122)
200 KOG4433 Tweety transmembrane/c 37.3 2.6E+02 0.0056 27.3 9.0 25 212-236 209-234 (526)
201 KOG4677 Golgi integral membran 37.2 4E+02 0.0086 25.9 15.3 45 190-234 506-550 (554)
202 PRK05529 cell division protein 37.2 36 0.00078 30.0 3.2 20 201-220 24-43 (255)
203 PRK14063 exodeoxyribonuclease 37.0 1.5E+02 0.0033 21.1 6.6 51 10-60 7-58 (76)
204 PRK00523 hypothetical protein; 37.0 38 0.00082 24.1 2.6 23 213-235 7-31 (72)
205 PF13980 UPF0370: Uncharacteri 37.0 40 0.00086 23.0 2.6 25 217-241 10-34 (63)
206 PHA02692 hypothetical protein; 36.9 52 0.0011 23.2 3.3 11 223-233 59-69 (70)
207 PF14937 DUF4500: Domain of un 36.9 40 0.00087 24.7 2.8 29 208-236 33-62 (86)
208 PRK05696 fliL flagellar basal 36.6 35 0.00076 28.1 2.9 10 227-236 35-44 (170)
209 PF03918 CcmH: Cytochrome C bi 36.5 12 0.00025 30.5 0.0 43 212-256 101-143 (148)
210 PF10805 DUF2730: Protein of u 36.5 1.6E+02 0.0035 22.3 6.3 25 45-69 38-62 (106)
211 PF04111 APG6: Autophagy prote 36.2 3.1E+02 0.0067 25.0 9.3 8 238-245 272-279 (314)
212 PRK13461 F0F1 ATP synthase sub 36.1 33 0.00072 27.7 2.7 8 227-234 19-26 (159)
213 PRK14070 exodeoxyribonuclease 36.0 1.5E+02 0.0033 20.8 6.0 50 16-65 3-53 (69)
214 PTZ00046 rifin; Provisional 35.8 25 0.00054 32.8 2.0 7 9-15 71-77 (358)
215 PRK14471 F0F1 ATP synthase sub 35.5 35 0.00076 27.8 2.7 16 221-236 16-31 (164)
216 PF04678 DUF607: Protein of un 35.3 2.6E+02 0.0056 23.2 9.8 8 227-234 137-144 (180)
217 PRK01844 hypothetical protein; 35.3 42 0.00091 23.8 2.6 22 214-235 7-30 (72)
218 PF06072 Herpes_US9: Alphaherp 35.3 1.4E+02 0.003 20.4 5.0 13 196-208 10-22 (60)
219 PF07010 Endomucin: Endomucin; 35.3 46 0.001 29.0 3.4 6 221-226 198-203 (259)
220 PHA03386 P10 fibrous body prot 35.2 1.6E+02 0.0034 22.0 5.7 26 170-195 35-60 (94)
221 PF09972 DUF2207: Predicted me 35.2 1.8E+02 0.0038 27.5 7.9 12 242-253 266-277 (511)
222 COG1256 FlgK Flagellar hook-as 35.1 4.3E+02 0.0094 26.2 10.6 43 20-62 112-155 (552)
223 TIGR01477 RIFIN variant surfac 35.1 26 0.00056 32.6 2.0 7 227-233 329-335 (353)
224 PF12958 DUF3847: Protein of u 35.0 1.8E+02 0.004 21.3 7.4 48 173-220 3-53 (86)
225 PF11712 Vma12: Endoplasmic re 34.9 44 0.00096 26.6 3.2 28 209-236 109-137 (142)
226 PF15361 RIC3: Resistance to i 34.9 29 0.00062 28.3 2.1 16 220-235 88-103 (152)
227 PRK13453 F0F1 ATP synthase sub 34.8 32 0.00069 28.4 2.4 11 224-234 29-39 (173)
228 PF12575 DUF3753: Protein of u 34.6 61 0.0013 23.0 3.3 15 221-235 56-70 (72)
229 TIGR01843 type_I_hlyD type I s 34.6 3.7E+02 0.008 24.7 21.5 23 2-24 75-97 (423)
230 PRK13664 hypothetical protein; 34.6 48 0.001 22.5 2.7 24 218-241 12-35 (62)
231 PF13800 Sigma_reg_N: Sigma fa 34.6 79 0.0017 23.2 4.3 9 200-208 4-12 (96)
232 PRK14585 pgaD putative PGA bio 34.5 57 0.0012 26.1 3.6 28 209-236 50-77 (137)
233 PF03908 Sec20: Sec20; InterP 34.5 1.8E+02 0.0039 21.1 12.8 24 167-190 39-62 (92)
234 PF00435 Spectrin: Spectrin re 34.5 1.6E+02 0.0035 20.5 11.8 89 10-99 3-97 (105)
235 PF10661 EssA: WXG100 protein 34.4 52 0.0011 26.6 3.5 9 109-117 69-77 (145)
236 PF09177 Syntaxin-6_N: Syntaxi 33.9 1.9E+02 0.0041 21.2 11.3 60 12-71 5-68 (97)
237 KOG2196 Nuclear porin [Nuclear 33.8 3.4E+02 0.0073 24.0 11.3 26 42-67 134-159 (254)
238 PTZ00464 SNF-7-like protein; P 33.7 3.1E+02 0.0067 23.6 17.2 50 157-207 101-150 (211)
239 PRK14740 kdbF potassium-transp 33.4 98 0.0021 17.9 3.4 24 213-236 3-26 (29)
240 KOG4451 Uncharacterized conser 33.4 3.3E+02 0.0073 23.9 9.3 44 8-57 50-93 (286)
241 PF09777 OSTMP1: Osteopetrosis 33.3 71 0.0015 28.0 4.4 62 189-250 160-231 (237)
242 KOG0996 Structural maintenance 33.0 6.8E+02 0.015 27.4 22.2 39 51-95 860-898 (1293)
243 PRK14775 lipoprotein signal pe 32.9 55 0.0012 27.2 3.4 30 221-252 136-165 (170)
244 PF09451 ATG27: Autophagy-rela 32.8 44 0.00094 29.7 3.0 19 213-231 202-220 (268)
245 COG4499 Predicted membrane pro 32.6 59 0.0013 30.6 3.9 29 207-235 216-245 (434)
246 PF01034 Syndecan: Syndecan do 32.6 15 0.00033 25.4 0.1 15 223-237 26-40 (64)
247 PRK14758 hypothetical protein; 32.3 86 0.0019 17.7 3.0 14 215-228 9-22 (27)
248 PRK11281 hypothetical protein; 32.3 6.9E+02 0.015 27.2 22.0 46 162-207 283-328 (1113)
249 PF07438 DUF1514: Protein of u 32.3 39 0.00085 23.4 2.0 11 216-226 2-12 (66)
250 PF11166 DUF2951: Protein of u 32.2 2.2E+02 0.0047 21.4 12.7 22 213-234 75-96 (98)
251 PF05377 FlaC_arch: Flagella a 32.1 1.6E+02 0.0035 19.8 4.9 6 25-30 6-11 (55)
252 PF11570 E2R135: Coiled-coil r 31.8 2.6E+02 0.0057 22.2 8.7 86 8-105 15-100 (136)
253 TIGR01478 STEVOR variant surfa 31.8 38 0.00082 30.5 2.4 21 219-239 267-287 (295)
254 COG5185 HEC1 Protein involved 31.7 5E+02 0.011 25.4 17.9 14 158-171 397-410 (622)
255 PRK10929 putative mechanosensi 31.4 7.2E+02 0.015 27.1 21.6 44 164-207 265-308 (1109)
256 PF11346 DUF3149: Protein of u 31.2 65 0.0014 20.4 2.8 16 221-236 21-36 (42)
257 PF06013 WXG100: Proteins of 1 31.2 1.7E+02 0.0037 19.8 6.1 24 8-31 14-37 (86)
258 PTZ00046 rifin; Provisional 31.2 54 0.0012 30.6 3.4 7 227-233 334-340 (358)
259 KOG0933 Structural maintenance 31.1 7E+02 0.015 26.9 21.5 26 8-33 708-733 (1174)
260 PF05399 EVI2A: Ectropic viral 30.9 55 0.0012 28.2 3.1 14 237-250 174-187 (227)
261 PRK15058 cytochrome b562; Prov 30.8 2.2E+02 0.0047 22.6 6.3 24 7-30 77-100 (128)
262 PF07926 TPR_MLP1_2: TPR/MLP1/ 30.8 2.6E+02 0.0057 21.8 10.3 8 12-19 21-28 (132)
263 PTZ00370 STEVOR; Provisional 30.7 41 0.00088 30.4 2.4 21 219-239 263-283 (296)
264 PRK06654 fliL flagellar basal 30.6 75 0.0016 26.7 3.9 39 212-250 32-70 (181)
265 KOG4674 Uncharacterized conser 30.5 8.9E+02 0.019 27.9 21.8 67 141-207 396-462 (1822)
266 TIGR01477 RIFIN variant surfac 30.4 56 0.0012 30.4 3.3 27 213-239 312-338 (353)
267 KOG0933 Structural maintenance 30.4 7.2E+02 0.016 26.8 22.9 47 77-123 908-955 (1174)
268 KOG2374 Uncharacterized conser 30.4 2E+02 0.0043 28.3 7.0 43 177-219 25-68 (661)
269 PF06459 RR_TM4-6: Ryanodine R 30.3 1.6E+02 0.0035 26.4 6.2 38 198-237 160-197 (274)
270 PF06092 DUF943: Enterobacteri 30.2 47 0.001 27.3 2.5 16 221-236 13-28 (157)
271 PF15168 TRIQK: Triple QxxK/R 30.2 88 0.0019 22.4 3.6 23 213-235 53-75 (79)
272 KOG3251 Golgi SNAP receptor co 30.2 3.6E+02 0.0079 23.3 16.1 23 167-189 167-189 (213)
273 PRK12704 phosphodiesterase; Pr 30.1 3.2E+02 0.0069 26.9 8.8 51 15-65 131-182 (520)
274 PRK14584 hmsS hemin storage sy 30.1 65 0.0014 26.4 3.3 28 210-237 60-87 (153)
275 PF10146 zf-C4H2: Zinc finger- 30.0 3.8E+02 0.0081 23.4 11.8 24 42-65 53-76 (230)
276 PF15188 CCDC-167: Coiled-coil 29.9 2.3E+02 0.0049 20.8 7.0 57 6-66 3-60 (85)
277 PF05399 EVI2A: Ectropic viral 29.7 54 0.0012 28.3 2.9 7 206-212 121-127 (227)
278 PF05055 DUF677: Protein of un 29.6 2.3E+02 0.005 26.2 7.3 8 44-51 266-273 (336)
279 PF07106 TBPIP: Tat binding pr 29.6 3.1E+02 0.0066 22.3 9.6 58 41-101 78-135 (169)
280 PF15468 DUF4636: Domain of un 29.5 94 0.002 26.9 4.3 21 206-226 35-55 (243)
281 cd07596 BAR_SNX The Bin/Amphip 29.4 3.2E+02 0.0069 22.4 9.2 22 43-64 146-167 (218)
282 PF14899 DUF4492: Domain of un 29.4 79 0.0017 21.9 3.1 24 214-237 20-43 (64)
283 PF11812 DUF3333: Domain of un 29.4 1.1E+02 0.0023 25.0 4.6 34 203-236 4-40 (155)
284 smart00787 Spc7 Spc7 kinetocho 29.2 4.5E+02 0.0096 24.0 14.3 26 42-67 70-95 (312)
285 PF05335 DUF745: Protein of un 29.2 3.5E+02 0.0076 22.8 11.6 64 141-204 107-170 (188)
286 PHA02844 putative transmembran 29.2 85 0.0018 22.4 3.3 23 213-235 48-70 (75)
287 PF14235 DUF4337: Domain of un 29.0 3.2E+02 0.0069 22.3 7.3 28 77-104 68-95 (157)
288 PF03597 CcoS: Cytochrome oxid 29.0 1.4E+02 0.003 19.1 4.1 9 237-245 26-34 (45)
289 COG3088 CcmH Uncharacterized p 28.9 65 0.0014 26.2 3.1 27 212-238 105-131 (153)
290 PF15050 SCIMP: SCIMP protein 28.9 73 0.0016 25.0 3.2 14 221-234 21-34 (133)
291 COG3763 Uncharacterized protei 28.8 57 0.0012 23.0 2.4 10 227-236 22-31 (71)
292 PF12729 4HB_MCP_1: Four helix 28.7 2.7E+02 0.0059 21.4 12.8 29 36-64 73-101 (181)
293 PF05781 MRVI1: MRVI1 protein; 28.7 2.2E+02 0.0047 28.1 7.1 22 38-59 251-272 (538)
294 COG3105 Uncharacterized protei 28.6 79 0.0017 25.1 3.4 17 221-237 15-32 (138)
295 PF09716 ETRAMP: Malarial earl 28.4 1.8E+02 0.0039 21.0 5.2 36 200-235 42-79 (84)
296 KOG3653 Transforming growth fa 28.3 87 0.0019 30.5 4.3 28 222-249 167-194 (534)
297 PF10389 CoatB: Bacteriophage 28.1 65 0.0014 20.8 2.4 16 221-236 29-44 (46)
298 PF13166 AAA_13: AAA domain 28.1 6.3E+02 0.014 25.4 15.7 32 173-204 440-471 (712)
299 PF02158 Neuregulin: Neureguli 28.1 16 0.00035 34.2 -0.5 16 221-236 20-36 (404)
300 PF06810 Phage_GP20: Phage min 28.0 3.3E+02 0.0071 22.1 9.0 47 15-63 2-48 (155)
301 PRK09759 small toxic polypepti 28.0 51 0.0011 21.7 1.9 20 211-230 3-22 (50)
302 cd07912 Tweety_N N-terminal do 27.9 5.4E+02 0.012 24.6 12.0 10 211-220 207-216 (418)
303 PF15012 DUF4519: Domain of un 27.9 21 0.00046 24.0 0.1 11 221-231 41-51 (56)
304 PRK12785 fliL flagellar basal 27.8 20 0.00043 29.5 0.0 8 229-236 42-49 (166)
305 PF00261 Tropomyosin: Tropomyo 27.7 4E+02 0.0087 23.0 19.8 53 142-194 182-234 (237)
306 KOG4617 Uncharacterized conser 27.7 1.2E+02 0.0026 26.2 4.6 43 218-260 203-247 (249)
307 KOG1094 Discoidin domain recep 27.7 53 0.0011 33.0 2.8 20 214-233 396-415 (807)
308 PF03310 Cauli_DNA-bind: Cauli 27.5 2.3E+02 0.0051 22.2 5.8 14 41-54 44-57 (121)
309 PTZ00382 Variant-specific surf 27.5 18 0.00039 27.1 -0.3 16 221-236 78-93 (96)
310 PF00672 HAMP: HAMP domain; I 27.4 83 0.0018 20.9 3.2 15 222-236 12-26 (70)
311 PF07889 DUF1664: Protein of u 27.4 3.1E+02 0.0067 21.6 10.7 35 171-205 75-109 (126)
312 PRK04863 mukB cell division pr 27.3 9.4E+02 0.02 27.1 22.7 88 12-101 858-961 (1486)
313 PF13396 PLDc_N: Phospholipase 27.2 55 0.0012 20.4 2.0 24 213-236 22-45 (46)
314 PRK13729 conjugal transfer pil 27.1 3.7E+02 0.008 26.2 8.3 53 42-99 69-121 (475)
315 TIGR02797 exbB tonB-system ene 27.1 72 0.0016 27.2 3.4 23 210-232 12-34 (211)
316 TIGR03545 conserved hypothetic 27.1 6.3E+02 0.014 25.1 11.5 10 11-20 167-176 (555)
317 PF05531 NPV_P10: Nucleopolyhe 27.0 2.4E+02 0.0052 20.2 7.1 27 169-195 40-66 (75)
318 PRK10929 putative mechanosensi 26.9 8.5E+02 0.018 26.5 17.6 45 147-191 113-157 (1109)
319 TIGR01006 polys_exp_MPA1 polys 26.9 1.2E+02 0.0026 25.8 4.7 29 203-232 12-40 (226)
320 COG0216 PrfA Protein chain rel 26.9 5.3E+02 0.011 24.1 12.4 96 6-101 5-102 (363)
321 PF00517 GP41: Retroviral enve 26.6 4E+02 0.0087 22.6 8.2 36 154-189 105-140 (204)
322 PF10157 DUF2365: Uncharacteri 26.6 3.5E+02 0.0076 22.0 7.1 17 79-95 130-146 (149)
323 PRK00106 hypothetical protein; 26.6 3.9E+02 0.0084 26.5 8.6 29 147-175 298-327 (535)
324 PHA03011 hypothetical protein; 26.5 94 0.002 23.6 3.4 16 221-236 10-25 (120)
325 PF10498 IFT57: Intra-flagella 26.3 5.4E+02 0.012 24.0 12.1 23 81-103 293-315 (359)
326 PRK06073 NADH dehydrogenase su 26.3 1.8E+02 0.0038 22.9 5.1 35 221-255 18-55 (124)
327 PF14851 FAM176: FAM176 family 26.2 2.4E+02 0.0053 23.0 6.0 9 210-218 19-27 (153)
328 COG1196 Smc Chromosome segrega 26.1 8.7E+02 0.019 26.4 24.5 61 148-208 947-1007(1163)
329 COG5415 Predicted integral mem 26.1 4E+02 0.0087 23.1 7.5 26 181-206 18-43 (251)
330 PHA02650 hypothetical protein; 26.0 88 0.0019 22.6 3.0 17 220-236 56-72 (81)
331 PRK13831 conjugal transfer pro 25.8 92 0.002 29.8 4.0 6 242-247 92-97 (432)
332 COG4068 Uncharacterized protei 25.7 1.7E+02 0.0037 20.0 4.2 30 204-233 33-62 (64)
333 PF15372 DUF4600: Domain of un 25.7 3.4E+02 0.0074 21.5 9.8 68 11-92 14-82 (129)
334 PF14914 LRRC37AB_C: LRRC37A/B 25.7 1.6E+02 0.0035 24.0 4.8 17 204-220 112-128 (154)
335 PRK10414 biopolymer transport 25.5 80 0.0017 27.8 3.4 34 200-233 12-45 (244)
336 PRK10869 recombination and rep 25.3 6.7E+02 0.014 24.8 12.3 62 7-68 267-336 (553)
337 PF08172 CASP_C: CASP C termin 25.3 1.9E+02 0.0041 25.5 5.7 40 193-232 197-239 (248)
338 PF05008 V-SNARE: Vesicle tran 25.2 2.4E+02 0.0052 19.6 5.8 54 46-103 22-75 (79)
339 PF12768 Rax2: Cortical protei 25.1 95 0.0021 27.9 3.8 20 221-240 242-261 (281)
340 KOG3433 Protein involved in me 25.0 4.3E+02 0.0093 22.4 10.9 93 141-238 93-187 (203)
341 PF03823 Neurokinin_B: Neuroki 24.9 68 0.0015 21.6 2.1 21 237-258 36-56 (59)
342 PF07352 Phage_Mu_Gam: Bacteri 24.9 3.6E+02 0.0078 21.5 9.0 60 40-114 8-67 (149)
343 PF07850 Renin_r: Renin recept 24.8 28 0.0006 26.3 0.3 21 213-233 57-77 (98)
344 cd07633 BAR_OPHN1 The Bin/Amph 24.8 4.5E+02 0.0098 22.6 10.0 61 4-65 5-83 (207)
345 PRK10807 paraquat-inducible pr 24.8 6.9E+02 0.015 24.7 11.1 21 7-27 412-432 (547)
346 PF10694 DUF2500: Protein of u 24.5 25 0.00054 26.8 0.0 12 221-232 10-21 (110)
347 PF02706 Wzz: Chain length det 24.5 25 0.00054 27.5 0.0 34 202-236 6-39 (152)
348 PF03904 DUF334: Domain of unk 24.5 4.8E+02 0.01 22.8 19.2 29 161-189 110-138 (230)
349 PRK10132 hypothetical protein; 24.4 3.3E+02 0.0071 20.8 12.7 50 171-220 44-94 (108)
350 KOG2911 Uncharacterized conser 24.3 6.4E+02 0.014 24.2 13.0 52 155-206 311-362 (439)
351 TIGR03054 photo_alph_chp1 puta 24.2 87 0.0019 25.1 3.0 33 222-257 12-44 (135)
352 PF07926 TPR_MLP1_2: TPR/MLP1/ 24.2 3.5E+02 0.0075 21.1 10.7 53 42-95 59-111 (132)
353 COG4420 Predicted membrane pro 24.2 3.4E+02 0.0073 23.0 6.6 57 161-220 11-67 (191)
354 PF14975 DUF4512: Domain of un 24.2 32 0.00069 25.4 0.5 16 221-236 6-21 (88)
355 PF12354 Internalin_N: Bacteri 24.1 26 0.00057 23.7 0.0 7 242-248 34-40 (57)
356 COG0838 NuoA NADH:ubiquinone o 24.1 1.8E+02 0.0039 22.9 4.7 36 221-256 19-57 (123)
357 KOG0971 Microtubule-associated 24.0 9.1E+02 0.02 25.8 18.4 180 1-195 332-542 (1243)
358 PF04156 IncA: IncA protein; 23.9 4.1E+02 0.0088 21.8 12.7 19 47-65 128-146 (191)
359 PF03381 CDC50: LEM3 (ligand-e 23.9 1.1E+02 0.0024 27.4 4.0 16 221-237 257-272 (278)
360 PRK10801 colicin uptake protei 23.8 90 0.0019 27.1 3.4 23 211-233 14-36 (227)
361 PF10812 DUF2561: Protein of u 23.7 61 0.0013 27.7 2.1 14 213-226 64-77 (207)
362 PF11031 Phage_holin_T: Bacter 23.6 75 0.0016 27.2 2.6 34 199-232 14-48 (216)
363 COG4026 Uncharacterized protei 23.5 4E+02 0.0086 23.4 7.0 66 3-68 130-196 (290)
364 PF12751 Vac7: Vacuolar segreg 23.5 97 0.0021 29.2 3.6 13 207-219 296-308 (387)
365 PRK07248 hypothetical protein; 23.3 86 0.0019 22.6 2.7 22 1-22 1-22 (87)
366 PLN03094 Substrate binding sub 23.2 1.2E+02 0.0026 28.5 4.2 32 203-234 77-109 (370)
367 PF10805 DUF2730: Protein of u 23.2 3.3E+02 0.0072 20.5 7.6 9 57-65 66-74 (106)
368 PF05473 Herpes_UL45: UL45 pro 23.0 1E+02 0.0023 26.2 3.5 11 238-248 77-87 (200)
369 PF03961 DUF342: Protein of un 22.9 4.4E+02 0.0095 25.1 8.2 25 79-103 379-403 (451)
370 PF11068 YlqD: YlqD protein; 22.7 3.9E+02 0.0085 21.1 7.7 32 37-68 15-46 (131)
371 KOG1691 emp24/gp25L/p24 family 22.7 5E+02 0.011 22.4 8.3 23 214-236 183-205 (210)
372 TIGR02736 cbb3_Q_epsi cytochro 22.7 1.1E+02 0.0023 20.7 2.7 8 221-228 9-16 (56)
373 PF12128 DUF3584: Protein of u 22.7 1E+03 0.022 26.0 21.3 24 169-192 772-795 (1201)
374 TIGR01432 QOXA cytochrome aa3 22.6 1.3E+02 0.0027 25.8 4.0 17 221-237 36-52 (217)
375 TIGR02161 napC_nirT periplasmi 22.5 1.5E+02 0.0032 24.9 4.3 8 221-228 25-32 (185)
376 TIGR02796 tolQ TolQ protein. T 22.4 1E+02 0.0022 26.5 3.4 22 211-232 13-34 (215)
377 PRK14473 F0F1 ATP synthase sub 22.4 84 0.0018 25.5 2.8 12 223-234 18-29 (164)
378 PF15190 DUF4583: Domain of un 22.3 1.1E+02 0.0023 24.1 3.1 21 240-260 40-66 (128)
379 PF09788 Tmemb_55A: Transmembr 22.3 69 0.0015 28.4 2.3 19 202-220 187-205 (256)
380 COG1622 CyoA Heme/copper-type 22.3 1.4E+02 0.0029 26.4 4.2 19 218-236 44-62 (247)
381 KOG0996 Structural maintenance 22.2 1.1E+03 0.023 26.0 22.4 21 42-62 405-425 (1293)
382 PRK12800 fliF flagellar MS-rin 22.1 2.7E+02 0.0058 27.8 6.6 16 212-227 32-47 (574)
383 TIGR00255 conserved hypothetic 22.0 4.7E+02 0.01 23.6 7.7 65 18-87 131-195 (291)
384 PF01299 Lamp: Lysosome-associ 21.9 76 0.0017 28.6 2.6 10 228-237 289-298 (306)
385 PF06789 UPF0258: Uncharacteri 21.8 59 0.0013 26.6 1.6 33 199-231 118-152 (159)
386 PF10168 Nup88: Nuclear pore c 21.7 8.9E+02 0.019 24.9 17.3 18 79-96 636-653 (717)
387 PF08581 Tup_N: Tup N-terminal 21.7 3.2E+02 0.0068 19.7 9.5 21 7-27 3-23 (79)
388 smart00503 SynN Syntaxin N-ter 21.7 3.4E+02 0.0073 20.0 11.7 27 41-67 49-75 (117)
389 PF04906 Tweety: Tweety; Inte 21.6 6.9E+02 0.015 23.6 11.2 29 209-237 182-211 (406)
390 PF10814 DUF2562: Protein of u 21.5 4.2E+02 0.009 21.0 6.2 34 213-250 92-125 (133)
391 PF05103 DivIVA: DivIVA protei 21.4 92 0.002 23.9 2.7 23 5-27 22-44 (131)
392 COG5052 YOP1 Protein involved 21.4 4.5E+02 0.0097 22.2 6.7 37 178-215 3-39 (186)
393 PF15330 SIT: SHP2-interacting 21.4 1.6E+02 0.0034 22.5 3.9 16 224-239 15-30 (107)
394 cd07645 I-BAR_IMD_BAIAP2L1 Inv 21.4 2.4E+02 0.0051 24.6 5.3 61 6-66 73-140 (226)
395 PF05957 DUF883: Bacterial pro 21.3 3.3E+02 0.0071 19.7 13.3 66 153-218 12-79 (94)
396 cd05492 Bromo_ZMYND11 Bromodom 21.3 2.1E+02 0.0046 21.8 4.6 54 1-56 47-108 (109)
397 PF12352 V-SNARE_C: Snare regi 21.2 2.6E+02 0.0057 18.6 9.9 57 141-197 6-62 (66)
398 PF04111 APG6: Autophagy prote 21.2 6.3E+02 0.014 23.0 10.6 17 48-64 70-86 (314)
399 PRK15111 antimicrobial peptide 21.1 1.9E+02 0.0041 25.9 5.0 19 202-220 17-35 (296)
400 PHA02642 C-type lectin-like pr 21.1 1E+02 0.0022 26.7 3.0 28 221-248 61-90 (216)
401 COG4537 ComGC Competence prote 21.1 1.1E+02 0.0024 23.2 2.9 43 204-246 4-49 (107)
402 PF10458 Val_tRNA-synt_C: Valy 21.0 2.8E+02 0.0061 18.8 6.7 27 72-98 36-62 (66)
403 PRK15406 oligopeptide ABC tran 21.0 1.9E+02 0.0042 26.1 5.0 33 204-236 29-61 (302)
404 PF08700 Vps51: Vps51/Vps67; 21.0 3.1E+02 0.0066 19.3 8.0 11 47-57 63-73 (87)
405 PF13121 DUF3976: Domain of un 21.0 51 0.0011 20.2 0.8 9 221-229 30-38 (41)
406 COG3074 Uncharacterized protei 20.8 3.2E+02 0.0068 19.4 8.9 13 47-59 9-21 (79)
407 PF11239 DUF3040: Protein of u 20.8 1.8E+02 0.004 20.7 4.0 17 179-195 10-26 (82)
408 PF08196 UL2: UL2 protein; In 20.8 1.4E+02 0.0029 19.9 2.9 19 217-235 38-56 (60)
409 PF13268 DUF4059: Protein of u 20.7 1.3E+02 0.0029 21.2 3.0 16 226-241 25-40 (72)
410 COG5346 Predicted membrane pro 20.6 4.3E+02 0.0094 20.9 8.4 13 141-153 47-59 (136)
411 PF13997 YqjK: YqjK-like prote 20.6 3.1E+02 0.0068 19.3 7.6 37 170-206 2-38 (73)
412 PF14257 DUF4349: Domain of un 20.3 5.8E+02 0.013 22.2 10.4 85 16-104 106-191 (262)
413 PF11044 TMEMspv1-c74-12: Plec 20.3 1.1E+02 0.0023 19.7 2.2 14 221-234 17-30 (49)
414 TIGR00606 rad50 rad50. This fa 20.2 1.2E+03 0.026 25.8 23.9 71 135-205 576-652 (1311)
415 PF05478 Prominin: Prominin; 20.1 9.9E+02 0.021 24.8 22.1 76 145-220 337-421 (806)
No 1
>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=9.3e-43 Score=290.17 Aligned_cols=218 Identities=16% Similarity=0.297 Sum_probs=194.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhchhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCChHhHHHHHHHHH
Q 042996 6 ISDDLAEINGQITDIFRALSNGFQKLEKIKDVNRQSRQLEELTDKMRECKRLIKEFDREVKDIEGRNDPETNKMLSEKKQ 85 (261)
Q Consensus 6 ~s~~l~~~e~~~~~i~~~i~~~~~~L~~~~~~~~r~~~i~~i~~~l~ea~~ll~qme~Ev~~~~~s~~~~~r~~~~~~~~ 85 (261)
||+.|++||++|..+..+|++.++++.+.+ +++|+..+.+|+..++||+++|.|||+||+.+ ||+.|..|..|++
T Consensus 1 ms~~fe~yEqqy~~l~a~it~k~~~~~~~~-~~ekk~~l~~i~~~leEa~ell~qMdlEvr~l----p~~~Rs~~~~KlR 75 (220)
T KOG1666|consen 1 MSSLFEGYEQQYRELSAEITKKIGRALSLP-GSEKKQLLSEIDSKLEEANELLDQMDLEVREL----PPNFRSSYLSKLR 75 (220)
T ss_pred CchHHHHHHHHHHHHHHHHHHhHHHHhcCC-chHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC----CchhhhHHHHHHH
Confidence 689999999999999999999999999875 88999999999999999999999999999876 5667889999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhh-hhhhhhhcCCCCCCCCcchhhhhchhhHHHHHHhhhhhhHHHHHHHHHHHHhHHHHHH
Q 042996 86 SMVKELNSYVALKKQHQTNLE-NNKRVDLFDGPNEGFAEDNVLLASSMTNQQLMDSGNRMMDETDQAIERSKQVVHETIN 164 (261)
Q Consensus 86 ~~~~~l~~~~~~~k~~~~~~~-~~~R~~L~~~~~~~~~~~n~~~~~~~~~~~ll~~~~~~l~~~~~~L~~s~~~~~ete~ 164 (261)
.|++++++++.+++...+... ..+|+++++... +++. ..+.+||++|++ +++++.+++++|.+++|++.|||+
T Consensus 76 ~yksdl~~l~~e~k~~~~~~~~~~~rde~~~~~~--add~---~~~~dQR~rLl~-nTerLeRst~rl~ds~Ria~ETEq 149 (220)
T KOG1666|consen 76 EYKSDLKKLKRELKRTTSRNLNAGDRDELLEALE--ADDQ---NISADQRARLLQ-NTERLERSTDRLKDSQRIALETEQ 149 (220)
T ss_pred HHHHHHHHHHHHHHHhhccccccchHHHHHhhhh--cccc---ccchhHHHHHHh-hhHHHHHhHHHHHHHHHHHHHHHH
Confidence 999999999999887763321 257888886642 2222 245679999998 999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH-HHHHHHHHHHHhhc
Q 042996 165 VGTETAAVLKAQTEQMSRIVNELDSIHFSIKKASQLVKEIGRQVATDKCIMAMLFL-IVIGVIAIIIVKLV 234 (261)
Q Consensus 165 ig~~il~~L~~Qre~l~~~~~~l~~i~~~L~~s~~~l~~m~rr~~~dK~i~~~iil-l~i~Ii~vi~~k~~ 234 (261)
||.+|+++|+.||++|++++..+.+++++|++|+++|+.|.||+..|||++++||+ ++++|++++|+||+
T Consensus 150 IG~~IL~dL~~QRe~L~rar~rL~~td~~lgkS~kiL~tM~RR~~~nk~~~~aii~~l~~~il~ilY~kf~ 220 (220)
T KOG1666|consen 150 IGSEILEDLHGQREQLERARERLRETDANLGKSRKILTTMTRRLIRNKFTLTAIIALLVLAILLILYSKFT 220 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999887 66777788888885
No 2
>KOG3251 consensus Golgi SNAP receptor complex member [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.83 E-value=2e-18 Score=145.20 Aligned_cols=206 Identities=15% Similarity=0.191 Sum_probs=156.1
Q ss_pred HHHHHHHHHHHHHhhhhchhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCChHhHHHH---HHHHHHHHH
Q 042996 13 INGQITDIFRALSNGFQKLEKIKDVNRQSRQLEELTDKMRECKRLIKEFDREVKDIEGRNDPETNKML---SEKKQSMVK 89 (261)
Q Consensus 13 ~e~~~~~i~~~i~~~~~~L~~~~~~~~r~~~i~~i~~~l~ea~~ll~qme~Ev~~~~~s~~~~~r~~~---~~~~~~~~~ 89 (261)
+-...+.++.+++.+++++++.....+-...+..+...|.++...+..|+.-+...|++.+++.|.++ ..++..++.
T Consensus 4 ly~~t~~~~~k~q~~l~rlE~~~~~~e~~~v~~~i~~sI~~~~s~~~rl~~~~~~epp~~rq~~rlr~dQl~~d~~~l~~ 83 (213)
T KOG3251|consen 4 LYQSTNRQLDKLQRGLIRLERTIKTQEVSAVENSIQRSIDQYASRCQRLDVLVSKEPPKSRQAARLRVDQLLEDVEHLQT 83 (213)
T ss_pred HHHHHHHHHHHHHHHHHHHHccccccchHHHHHHHHHhHHHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 34556677778899999999854334678999999999999999999999999999888777766443 355555555
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhcCCCCCCCCcchhhhhchhhHHHHHHhhhhhhHHHHHHHHHHHHhHHHHHHHHHHH
Q 042996 90 ELNSYVALKKQHQTNLENNKRVDLFDGPNEGFAEDNVLLASSMTNQQLMDSGNRMMDETDQAIERSKQVVHETINVGTET 169 (261)
Q Consensus 90 ~l~~~~~~~k~~~~~~~~~~R~~L~~~~~~~~~~~n~~~~~~~~~~~ll~~~~~~l~~~~~~L~~s~~~~~ete~ig~~i 169 (261)
.+..+......-...+ .+|.+|+++. |+. +....+. ..+-.-+.+++|.++++.+++.-..|.+|
T Consensus 84 ~l~~~~~R~~~r~~~~--~er~~lL~~~---~~~-~~~~~~~---------~~D~el~~~d~l~~s~~~lDd~l~~G~~i 148 (213)
T KOG3251|consen 84 SLRTSMNRNNRREQQA--RERVELLDRR---FTN-GATGTSI---------PFDEELQENDSLKRSHNMLDDLLESGSAI 148 (213)
T ss_pred HHHHHHHHhHHHHHHH--HHHHHHhcCC---CCC-CCccCCC---------cchHHHHhhhHHHHHHhhHHHHHHHHHHH
Confidence 5555553322222211 3589999775 222 1111110 12234567889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhc
Q 042996 170 AAVLKAQTEQMSRIVNELDSIHFSIKKASQLVKEIGRQVATDKCIMAMLFLIVIGVIAIIIVKLV 234 (261)
Q Consensus 170 l~~L~~Qre~l~~~~~~l~~i~~~L~~s~~~l~~m~rr~~~dK~i~~~iill~i~Ii~vi~~k~~ 234 (261)
+++|..|+-.|.++++++.++.++||.|+.+|+.|.||...||+|||++++ ++.|++|++|+|.
T Consensus 149 le~l~~Q~~~L~~~~~ki~~~~ntLGlSn~ti~lIeRR~~~Dk~iF~~G~i-~~~v~~yl~~~wl 212 (213)
T KOG3251|consen 149 LENLVEQRLTLKGTQKKILDILNTLGLSNQTIRLIERRVREDKIIFYGGVI-LTLVIMYLFYRWL 212 (213)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999886 4444455555565
No 3
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=99.49 E-value=9.4e-13 Score=98.82 Aligned_cols=88 Identities=19% Similarity=0.359 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 042996 146 DETDQAIERSKQVVHETINVGTETAAVLKAQTEQMSRIVNELDSIHFSIKKASQLVKEIGRQVATDKCIMAMLFLIVIGV 225 (261)
Q Consensus 146 ~~~~~~L~~s~~~~~ete~ig~~il~~L~~Qre~l~~~~~~l~~i~~~L~~s~~~l~~m~rr~~~dK~i~~~iill~i~I 225 (261)
.+.+.+|.++.+++.+..+.|..+++.|.+|+++|.+++++++++.+.++.|+++++.+.|+..+||+++|+.+++|+++
T Consensus 4 ~~vT~~L~rt~~~m~~ev~~s~~t~~~L~~Ss~~L~~~~~e~~~~~~~l~~s~~ll~~l~r~~~~D~~li~~~~~~f~~~ 83 (92)
T PF03908_consen 4 SDVTESLRRTRQMMAQEVERSELTLQTLEESSATLRSTNDEYDGQSSLLKKSRKLLKKLERRDKTDRILIFFAFLFFLLV 83 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhh
Q 042996 226 IAIIIVKL 233 (261)
Q Consensus 226 i~vi~~k~ 233 (261)
|+||+||.
T Consensus 84 v~yI~~rR 91 (92)
T PF03908_consen 84 VLYILWRR 91 (92)
T ss_pred HHHHhhhc
Confidence 99998874
No 4
>PF12352 V-SNARE_C: Snare region anchored in the vesicle membrane C-terminus; PDB: 1GL2_C 2NPS_C.
Probab=99.37 E-value=5.3e-12 Score=88.84 Aligned_cols=65 Identities=29% Similarity=0.487 Sum_probs=62.3
Q ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042996 144 MMDETDQAIERSKQVVHETINVGTETAAVLKAQTEQMSRIVNELDSIHFSIKKASQLVKEIGRQV 208 (261)
Q Consensus 144 ~l~~~~~~L~~s~~~~~ete~ig~~il~~L~~Qre~l~~~~~~l~~i~~~L~~s~~~l~~m~rr~ 208 (261)
.+.+++++|.++.++++|++++|.+|+.+|..||++|.++++++++++++++.|+++|+.|.||.
T Consensus 2 ~l~~e~~~L~~s~~~~~e~~~~g~~~l~~L~~Qre~L~~~~~kl~~i~~~l~~s~~~l~~I~rR~ 66 (66)
T PF12352_consen 2 RLLRESDSLQRSHRMADETEEIGAATLEDLRSQREQLKRVRDKLDDIDSNLPKSNSLLKRISRRK 66 (66)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHccC
Confidence 57789999999999999999999999999999999999999999999999999999999999984
No 5
>KOG3208 consensus SNARE protein GS28 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.24 E-value=4.1e-09 Score=89.13 Aligned_cols=209 Identities=15% Similarity=0.178 Sum_probs=139.5
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhchhhhcch-----------h-----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 042996 7 SDDLAEINGQITDIFRALSNGFQKLEKIKDV-----------N-----RQSRQLEELTDKMRECKRLIKEFDREVKDIEG 70 (261)
Q Consensus 7 s~~l~~~e~~~~~i~~~i~~~~~~L~~~~~~-----------~-----~r~~~i~~i~~~l~ea~~ll~qme~Ev~~~~~ 70 (261)
++-++.+..+...+=.++...+..+.++... - .=+..-.+|+.-|++...+..+|..-+ ..
T Consensus 4 ~s~we~LRkqArslE~~ld~kL~syskl~as~~gg~~~~~s~~~~~~~s~ks~~~eie~LLeql~~vndsm~~~~---~s 80 (231)
T KOG3208|consen 4 SSSWEALRKQARSLENQLDSKLVSYSKLGASTHGGYDIDTSPLSGSDRSFKSLENEIEGLLEQLQDVNDSMNDCA---SS 80 (231)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCcccccCcCcchhhhHHHHHHHHHHHHHHHHHHHhhc---cC
Confidence 3445666666666666666666665554322 0 113555677777788888877777621 11
Q ss_pred CCChHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh-hhhhhhcCCCCCCCCcchhhhhchhhHHHHHHhhhhhhHHHH
Q 042996 71 RNDPETNKMLSEKKQSMVKELNSYVALKKQHQTNLEN-NKRVDLFDGPNEGFAEDNVLLASSMTNQQLMDSGNRMMDETD 149 (261)
Q Consensus 71 s~~~~~r~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~-~~R~~L~~~~~~~~~~~n~~~~~~~~~~~ll~~~~~~l~~~~ 149 (261)
..+. ..+...++.|+.-|..|.+++......+.. .+|+.|++.... ....+ .......+. +..-+-.
T Consensus 81 ~a~~---aa~~htL~RHrEILqdy~qef~rir~n~~a~~e~~~Ll~s~~~-~~~~~-~~~~~~~~~-------e~~lkE~ 148 (231)
T KOG3208|consen 81 PANS---AAVMHTLQRHREILQDYTQEFRRIRSNIDAKRERESLLESVRA-DISSY-PSASGFNRG-------EMYLKEH 148 (231)
T ss_pred CCCc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhccC-CccCCCchH-------HHHHHHh
Confidence 1122 235566667776677777666555554432 568888765310 00000 011112222 3445678
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Q 042996 150 QAIERSKQVVHETINVGTETAAVLKAQTEQMSRIVNELDSIHFSIKKASQLVKEIGRQVATDKCIMAMLFLIVIGVIAII 229 (261)
Q Consensus 150 ~~L~~s~~~~~ete~ig~~il~~L~~Qre~l~~~~~~l~~i~~~L~~s~~~l~~m~rr~~~dK~i~~~iill~i~Ii~vi 229 (261)
+.|+++.+.++|+..++.+|-++|+.||..+.+++.++.++...+=.-+.+|..+.+|-..|-+|+..||. +|.|++++
T Consensus 149 ~~in~s~~~vde~Is~A~aTre~l~~Qrs~l~~i~~k~~~~a~r~P~IN~Ll~kIk~kkrrdslILa~Vis-~C~llllf 227 (231)
T KOG3208|consen 149 DHINNSIRLVDELISQAQATRENLHSQRSVLGGINNKVNNIANRFPAINQLLQKIKIKKRRDSLILAAVIS-VCTLLLLF 227 (231)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcchHHHHHHHHHHHhhhhhHHHHHHHH-HHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999888775 33333333
Q ss_pred HH
Q 042996 230 IV 231 (261)
Q Consensus 230 ~~ 231 (261)
||
T Consensus 228 y~ 229 (231)
T KOG3208|consen 228 YW 229 (231)
T ss_pred HH
Confidence 33
No 6
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=99.23 E-value=2e-10 Score=83.54 Aligned_cols=78 Identities=15% Similarity=0.326 Sum_probs=67.8
Q ss_pred HHHHHHHHHhhhhchhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCChHhHHHHHHHHHHHHHHHHHHHH
Q 042996 17 ITDIFRALSNGFQKLEKIKDVNRQSRQLEELTDKMRECKRLIKEFDREVKDIEGRNDPETNKMLSEKKQSMVKELNSYVA 96 (261)
Q Consensus 17 ~~~i~~~i~~~~~~L~~~~~~~~r~~~i~~i~~~l~ea~~ll~qme~Ev~~~~~s~~~~~r~~~~~~~~~~~~~l~~~~~ 96 (261)
|..++.+|.+.+..+.... +++|+..+++++..|++|+++|+|||+|++.+ |++.|..|..+++.|+++++++++
T Consensus 1 f~~l~~~i~~~l~~~~~~~-~~~r~~~i~~~e~~l~ea~~~l~qMe~E~~~~----p~s~r~~~~~kl~~yr~~l~~lk~ 75 (79)
T PF05008_consen 1 FQALTAEIKSKLERIKNLS-GEQRKSLIREIERDLDEAEELLKQMELEVRSL----PPSERNQYKSKLRSYRSELKKLKK 75 (79)
T ss_dssp HHHHHHHHHHHHHHGGGS--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhhccC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677888888888888754 58999999999999999999999999998754 678999999999999999999887
Q ss_pred HHH
Q 042996 97 LKK 99 (261)
Q Consensus 97 ~~k 99 (261)
.++
T Consensus 76 ~l~ 78 (79)
T PF05008_consen 76 ELK 78 (79)
T ss_dssp HHH
T ss_pred Hhc
Confidence 765
No 7
>KOG3202 consensus SNARE protein TLG1/Syntaxin 6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.03 E-value=3.8e-07 Score=79.25 Aligned_cols=103 Identities=16% Similarity=0.234 Sum_probs=79.9
Q ss_pred hhhhhcCCCCCCCCcchhhhhchhh-HHHHHHhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042996 109 KRVDLFDGPNEGFAEDNVLLASSMT-NQQLMDSGNRMMDETDQAIERSKQVVHETINVGTETAAVLKAQTEQMSRIVNEL 187 (261)
Q Consensus 109 ~R~~L~~~~~~~~~~~n~~~~~~~~-~~~ll~~~~~~l~~~~~~L~~s~~~~~ete~ig~~il~~L~~Qre~l~~~~~~l 187 (261)
.|+.|++...++--+.+.......+ -+...+.....+++++..|+....++..+.++|..+.++|..|...|+.....+
T Consensus 110 ~r~~l~~~~~~~~~~~~~~~~~~~D~v~~~~~~qqqm~~eQDe~Ld~ls~ti~rlk~~a~~~g~EL~~Q~~llDdl~~e~ 189 (235)
T KOG3202|consen 110 IRDILLGPEKSPNLDEAMSRASGLDNVQEIVQLQQQMLQEQDEGLDGLSATVQRLKGMALAMGEELEEQGRLLDDLDNEM 189 (235)
T ss_pred chhhhcCCCCCCchhhhHHHhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3888886643221012212223333 244445567788999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhh
Q 042996 188 DSIHFSIKKASQLVKEIGRQVATDK 212 (261)
Q Consensus 188 ~~i~~~L~~s~~~l~~m~rr~~~dK 212 (261)
+.+++-|.+..+.+..|.+ +..++
T Consensus 190 d~t~srl~~~~~~l~~v~~-~~s~~ 213 (235)
T KOG3202|consen 190 DRTESRLDRVMKRLAKVNR-MASQC 213 (235)
T ss_pred HHHHHHHHHHHHHHHHHHH-Hhccc
Confidence 9999999999999999999 44443
No 8
>KOG0812 consensus SNARE protein SED5/Syntaxin 5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.92 E-value=1.6e-06 Score=76.31 Aligned_cols=85 Identities=18% Similarity=0.317 Sum_probs=74.8
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Q 042996 136 QLMDSGNRMMDETDQAIERSKQVVHETINVGTETAAVLKAQTEQMSRIVNELDSIHFSIKKASQLVKEIGRQVATDKCIM 215 (261)
Q Consensus 136 ~ll~~~~~~l~~~~~~L~~s~~~~~ete~ig~~il~~L~~Qre~l~~~~~~l~~i~~~L~~s~~~l~~m~rr~~~dK~i~ 215 (261)
.+++.+.+-..+-...+.+++..+.|..+|..++..-...|.|.+.||++.+++++-+++-|...|.++--|+-.|||++
T Consensus 213 ~ll~es~~Y~Q~R~~~~q~IEstIsElG~IF~QLA~mVseQ~E~i~RID~nv~ds~lnI~gA~~ellKy~e~vSSNRwLm 292 (311)
T KOG0812|consen 213 ALLDESDEYVQERAKTMQNIESTISELGGIFQQLASMVSEQEETIQRIDDNVDDSDLNIEGAHSELLKYFERVSSNRWLM 292 (311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHhccchHHH
Confidence 34454445556667788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHH
Q 042996 216 AMLFL 220 (261)
Q Consensus 216 ~~iil 220 (261)
+=|+.
T Consensus 293 vkiF~ 297 (311)
T KOG0812|consen 293 VKIFG 297 (311)
T ss_pred HHHHH
Confidence 76654
No 9
>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=98.85 E-value=2.6e-06 Score=72.95 Aligned_cols=90 Identities=16% Similarity=0.240 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhhhhhHHHHHHHHHH
Q 042996 146 DETDQAIERSKQVVHETINVGTETAAVLKAQTEQMSRIVNELDSIHFSIKKASQLVKE---IGRQVATDKCIMAMLFLIV 222 (261)
Q Consensus 146 ~~~~~~L~~s~~~~~ete~ig~~il~~L~~Qre~l~~~~~~l~~i~~~L~~s~~~l~~---m~rr~~~dK~i~~~iill~ 222 (261)
..-...|.+.+++++|..++.+.+-+....|.+.++.+.+.+.+...+++.+...+.+ .+|.+..+||++|+|++++
T Consensus 181 q~Rh~~ikkiEkt~ael~qLfndm~~~V~eq~e~Vd~I~~~~~~~~~n~~~g~~h~d~AvksaRaaRkkki~c~gI~~ii 260 (280)
T COG5074 181 QARHQEIKKIEKTMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQENVEQGVGHTDKAVKSARAARKKKIRCYGICFII 260 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHhhHhhHHhhHHHhhhhHHHHHHHHHHHHhcceehhhhHHHH
Confidence 3455678899999999999999999999999999999999999999999988755432 3788999999999998877
Q ss_pred HHHHHHHHHhhcc
Q 042996 223 IGVIAIIIVKLVN 235 (261)
Q Consensus 223 i~Ii~vi~~k~~~ 235 (261)
|++|+++++|.+.
T Consensus 261 i~viv~vv~~v~~ 273 (280)
T COG5074 261 IIVIVVVVFKVVP 273 (280)
T ss_pred HHHHHHHHhcccc
Confidence 7777777776653
No 10
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.81 E-value=5.5e-06 Score=74.62 Aligned_cols=88 Identities=19% Similarity=0.346 Sum_probs=75.0
Q ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhhhhhHHHHHHHH
Q 042996 144 MMDETDQAIERSKQVVHETINVGTETAAVLKAQTEQMSRIVNELDSIHFSIKKASQLVK---EIGRQVATDKCIMAMLFL 220 (261)
Q Consensus 144 ~l~~~~~~L~~s~~~~~ete~ig~~il~~L~~Qre~l~~~~~~l~~i~~~L~~s~~~l~---~m~rr~~~dK~i~~~iil 220 (261)
-...-.+.+.+.++.+.|..++..++..-...|.|+|++|..++....+.+..|...++ ...+++.++|||++++++
T Consensus 200 Eiq~Rh~~ik~LEksi~ELhqlFlDMa~LVe~QgEmvd~IE~nV~~A~~~V~~g~~~~~kAv~~qkkaRK~k~i~ii~~i 279 (297)
T KOG0810|consen 200 EIQERHDEIKKLEKSIRELHQLFLDMAVLVESQGEMVDRIENNVENAVDYVEQGVDHLKKAVKYQKKARKWKIIIIIILI 279 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhceeeeehHHH
Confidence 44556678999999999999999999999999999999999999999999999999888 789999999988887776
Q ss_pred HHHHHHHHHHH
Q 042996 221 IVIGVIAIIIV 231 (261)
Q Consensus 221 l~i~Ii~vi~~ 231 (261)
++++|+++++.
T Consensus 280 ii~~v~v~~i~ 290 (297)
T KOG0810|consen 280 IIIVVLVVVIV 290 (297)
T ss_pred HHHHHHhhhhc
Confidence 55555444333
No 11
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.48 E-value=0.00024 Score=63.13 Aligned_cols=90 Identities=18% Similarity=0.313 Sum_probs=69.2
Q ss_pred hhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhhhhhHHHHHH
Q 042996 142 NRMMDETDQAIERSKQVVHETINVGTETAAVLKAQTEQMSRIVNELDSIHFSIKKASQLVKE---IGRQVATDKCIMAML 218 (261)
Q Consensus 142 ~~~l~~~~~~L~~s~~~~~ete~ig~~il~~L~~Qre~l~~~~~~l~~i~~~L~~s~~~l~~---m~rr~~~dK~i~~~i 218 (261)
.+..++-.+.+.+.++-+.|.++|..+...-.+.|.++++.|..++..+..++..|+.-|+. ..+....-+|++.+|
T Consensus 172 ~~~ieeR~q~I~~lE~dI~dvN~IFkdL~~lV~eQG~~VDsIe~nve~a~~nveqg~~~L~kA~~yq~~~~k~~~~ll~v 251 (269)
T KOG0811|consen 172 LDLIEEREQAIEQLEADIIDVNEIFKDLGSLVHEQGELVDSIEANVENASVNVEQGTENLRKAAKYQRKARKKKCILLLV 251 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhHH
Confidence 34556678899999999999999999999999999999999999999999999999998866 333344444554444
Q ss_pred HHHHHHHHHHHHH
Q 042996 219 FLIVIGVIAIIIV 231 (261)
Q Consensus 219 ill~i~Ii~vi~~ 231 (261)
++++++||+.+++
T Consensus 252 ~~~v~lii~l~i~ 264 (269)
T KOG0811|consen 252 GGPVGLIIGLIIA 264 (269)
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444443
No 12
>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=98.05 E-value=0.0022 Score=56.54 Aligned_cols=90 Identities=19% Similarity=0.291 Sum_probs=72.3
Q ss_pred hhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhhhhHHHHHHHH
Q 042996 142 NRMMDETDQAIERSKQVVHETINVGTETAAVLKAQTEQMSRIVNELDSIHFSIKKASQLVK-EIGRQVATDKCIMAMLFL 220 (261)
Q Consensus 142 ~~~l~~~~~~L~~s~~~~~ete~ig~~il~~L~~Qre~l~~~~~~l~~i~~~L~~s~~~l~-~m~rr~~~dK~i~~~iil 220 (261)
+....+-.+.+.+..+.+.|..+|..+...-..+|.+.+++++-.+..+..++.-|++-|. .+..+-.+.||-+|+.++
T Consensus 187 q~l~~er~~eI~~l~~gI~Eln~IF~dL~~lV~eQG~lVdrID~Ni~~t~~n~k~A~kEL~kA~~hqrrt~k~~~~~Lli 266 (283)
T COG5325 187 QILITERDEEIKNLARGIYELNEIFRDLGSLVGEQGELVDRIDFNIENTSDNLKNANKELEKAPAHQRRTKKCRFYLLLI 266 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhhhhhhhHHHHhhHHHHHHhHHHHhhhccchhhHHHH
Confidence 3346677889999999999999999999999999999999999999999999999998774 466667788887777554
Q ss_pred -HHHHHHHHHHH
Q 042996 221 -IVIGVIAIIIV 231 (261)
Q Consensus 221 -l~i~Ii~vi~~ 231 (261)
++++.++++..
T Consensus 267 l~vv~lfv~l~~ 278 (283)
T COG5325 267 LLVVLLFVSLIK 278 (283)
T ss_pred HHHHHHHHHHHH
Confidence 33333333333
No 13
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=98.03 E-value=0.0041 Score=54.90 Aligned_cols=97 Identities=12% Similarity=0.290 Sum_probs=64.2
Q ss_pred hHHHHHHhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 042996 133 TNQQLMDSGNRMMDETDQAIERSKQVVHETINVGTETAAVLKAQTEQMSRIVNELDSIHFSIKKASQLVKEIGRQVATDK 212 (261)
Q Consensus 133 ~~~~ll~~~~~~l~~~~~~L~~s~~~~~ete~ig~~il~~L~~Qre~l~~~~~~l~~i~~~L~~s~~~l~~m~rr~~~dK 212 (261)
.-+.++.++...+++-++.+-. ++....+-....-..|......|.++...++.--+.++.+..-|+.+.+....
T Consensus 153 ~~e~~l~~~~~~QE~L~~em~~---La~~LK~~s~~~~~~l~~D~~~L~~~~~~~d~n~~~l~~~~~rl~~~~~~~~~-- 227 (251)
T PF09753_consen 153 SLEKILQHHRNLQEDLTEEMLS---LARQLKENSLAFSQILKEDNKVLDRTEEGLDRNLSSLKRESKRLKEHSSKSWG-- 227 (251)
T ss_pred cHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--
Confidence 3344444444455554444444 44455555666667779999999999999999999999999999998766544
Q ss_pred HHHHHHHH--HHHHHHHHHHHhhc
Q 042996 213 CIMAMLFL--IVIGVIAIIIVKLV 234 (261)
Q Consensus 213 ~i~~~iil--l~i~Ii~vi~~k~~ 234 (261)
|++|++++ +++.|+.|+|.|+|
T Consensus 228 ~~~~~~i~~v~~~Fi~mvl~iri~ 251 (251)
T PF09753_consen 228 CWTWLMIFVVIIVFIMMVLFIRIF 251 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHheeC
Confidence 66666443 33334455555554
No 14
>KOG0809 consensus SNARE protein TLG2/Syntaxin 16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.96 E-value=0.0035 Score=55.82 Aligned_cols=74 Identities=11% Similarity=0.212 Sum_probs=63.9
Q ss_pred HhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 042996 139 DSGNRMMDETDQAIERSKQVVHETINVGTETAAVLKAQTEQMSRIVNELDSIHFSIKKASQLVKEIGRQVATDK 212 (261)
Q Consensus 139 ~~~~~~l~~~~~~L~~s~~~~~ete~ig~~il~~L~~Qre~l~~~~~~l~~i~~~L~~s~~~l~~m~rr~~~dK 212 (261)
..+.+...+-...+....+.+.|..+|..+...-..+|.-.+++++-+++.+.-.++.|.+.|.+..+--..+|
T Consensus 207 e~~~~~~~erE~EV~ql~~sI~dL~~if~DL~~lVvdQGtvvDRIDyNvEqt~~~v~~a~keL~KAe~yQk~~~ 280 (305)
T KOG0809|consen 207 ENNEEVVREREKEVTQLVESIYDLNQIFKDLSALVVDQGTVVDRIDYNVEQTQVRVEDALKELHKAERYQKRNK 280 (305)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhheecchhhhhhhHHhHHHHHHHHHHHHhcCC
Confidence 43566667777888889999999999999999999999999999999999999999999999988766555554
No 15
>smart00397 t_SNARE Helical region found in SNAREs. All alpha-helical motifs that form twisted and parallel four-helix bundles in target soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptor proteins. This motif found in "Q-SNAREs".
Probab=97.70 E-value=0.00043 Score=47.53 Aligned_cols=62 Identities=26% Similarity=0.423 Sum_probs=57.5
Q ss_pred hhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042996 142 NRMMDETDQAIERSKQVVHETINVGTETAAVLKAQTEQMSRIVNELDSIHFSIKKASQLVKE 203 (261)
Q Consensus 142 ~~~l~~~~~~L~~s~~~~~ete~ig~~il~~L~~Qre~l~~~~~~l~~i~~~L~~s~~~l~~ 203 (261)
...+.+....|.+....+.++.++|..+...+..|.+.|.++...++.+...+..+.+-++.
T Consensus 4 ~~~~~~~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~d~~~~~~~~~~~~l~~ 65 (66)
T smart00397 4 DQMEEERDEELEQLEKSIGELKQIFLDMGTELEEQGEQLDRIEDNVDDADVNLKKANKRLKK 65 (66)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhc
Confidence 34677899999999999999999999999999999999999999999999999999987754
No 16
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=97.61 E-value=0.0037 Score=46.20 Aligned_cols=82 Identities=21% Similarity=0.312 Sum_probs=62.5
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH-HHHHHHHH
Q 042996 150 QAIERSKQVVHETINVGTETAAVLKAQTEQMSRIVNELDSIHFSIKKASQLVKEIGRQVATDKCIMAMLFL-IVIGVIAI 228 (261)
Q Consensus 150 ~~L~~s~~~~~ete~ig~~il~~L~~Qre~l~~~~~~l~~i~~~L~~s~~~l~~m~rr~~~dK~i~~~iil-l~i~Ii~v 228 (261)
+.+...+..++++..+-.+-++.+-+..+.|+...++..+....-..=.+.-+.+.|++.-.++-++++++ ++++++++
T Consensus 3 dkl~~i~~~v~~v~~im~~Ni~~ll~Rge~L~~L~~kt~~L~~~a~~F~k~a~~l~r~~~~~~~k~~~i~~~iv~~~~~~ 82 (89)
T PF00957_consen 3 DKLEQIQEQVEEVKNIMRENIDKLLERGEKLEELEDKTEELSDNAKQFKKNAKKLKRKMWWRNYKLYIIIIIIVIIIILI 82 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhhhhH
Confidence 46777888888888888888999999999999999998888888877777777788887776666666655 33333344
Q ss_pred HHH
Q 042996 229 IIV 231 (261)
Q Consensus 229 i~~ 231 (261)
+++
T Consensus 83 i~~ 85 (89)
T PF00957_consen 83 III 85 (89)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 17
>KOG3385 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.53 E-value=0.00076 Score=51.88 Aligned_cols=76 Identities=14% Similarity=0.190 Sum_probs=61.8
Q ss_pred hh-HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 042996 144 MM-DETDQAIERSKQVVHETINVGTETAAVLKAQTEQMSRIVNELDSIHFSIKKASQLVKEIGRQVATDKCIMAMLFL 220 (261)
Q Consensus 144 ~l-~~~~~~L~~s~~~~~ete~ig~~il~~L~~Qre~l~~~~~~l~~i~~~L~~s~~~l~~m~rr~~~dK~i~~~iil 220 (261)
.+ .+..+.+.....-+.-.+.+.-+|..+...|...|+.+.+.++.+.+-|+.+-.-++.|+|+ -.-++.+|.++.
T Consensus 29 ~le~ENee~~e~L~~kV~aLKsLs~dIg~Ev~~qnklld~mdddfdsts~~L~gtm~r~~~~ar~-sg~~l~~~m~~f 105 (118)
T KOG3385|consen 29 SLERENEEAAESLQQKVKALKSLSLDIGDEVRTQNKLLDGMDDDFDSTSGFLSGTMGRLKTMARR-SGISLLCWMAVF 105 (118)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccchhhhHHHHHHHHHHHHHHHhc-CCcchHHHHHHH
Confidence 44 44556666667777888889999999999999999999999999999999999999999999 444455555443
No 18
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]. Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....
Probab=97.43 E-value=0.0033 Score=43.13 Aligned_cols=60 Identities=18% Similarity=0.295 Sum_probs=56.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042996 148 TDQAIERSKQVVHETINVGTETAAVLKAQTEQMSRIVNELDSIHFSIKKASQLVKEIGRQ 207 (261)
Q Consensus 148 ~~~~L~~s~~~~~ete~ig~~il~~L~~Qre~l~~~~~~l~~i~~~L~~s~~~l~~m~rr 207 (261)
..+.|......+.+..+++.++...+..|.+.|+++...++.+...+..+.+-|..+.+.
T Consensus 2 ~d~~l~~l~~~i~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~ka~~~ 61 (63)
T PF05739_consen 2 RDEELDELEQSIQELKQMFQDIGEEVEEQNEMLDRIEDNVDRANENLKKGNKKLKKALKY 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHCHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 457788999999999999999999999999999999999999999999999999888765
No 19
>KOG3065 consensus SNAP-25 (synaptosome-associated protein) component of SNARE complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.36 E-value=0.0016 Score=58.04 Aligned_cols=72 Identities=24% Similarity=0.327 Sum_probs=64.0
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042996 134 NQQLMDSGNRMMDETDQAIERSKQVVHETINVGTETAAVLKAQTEQMSRIVNELDSIHFSIKKASQLVKEIG 205 (261)
Q Consensus 134 ~~~ll~~~~~~l~~~~~~L~~s~~~~~ete~ig~~il~~L~~Qre~l~~~~~~l~~i~~~L~~s~~~l~~m~ 205 (261)
.+.+-.........+..+-.++...+.+++..|..|+..|..|+|+|.+|...++.++.++.++.+.|..|.
T Consensus 63 ~~~l~~e~~~~~~eSl~St~~~L~~~~e~~~~g~~Tl~~L~~Q~eQL~rte~~lD~i~~d~~~~er~l~~l~ 134 (273)
T KOG3065|consen 63 VDELEQEIESTAQESLKSTRRMLKLAEESREDGSRTLVMLSEQGEQLERTEKNLDDIKVDLKRAERNLTELK 134 (273)
T ss_pred HHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHhhhhhhHHHHHHHHHHHHHHH
Confidence 344444455567778899999999999999999999999999999999999999999999999999999886
No 20
>KOG3894 consensus SNARE protein Syntaxin 18/UFE1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.04 E-value=0.12 Score=46.64 Aligned_cols=87 Identities=9% Similarity=0.131 Sum_probs=70.9
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-HHHHHHHHHHH
Q 042996 145 MDETDQAIERSKQVVHETINVGTETAAVLKAQTEQMSRIVNELDSIHFSIKKASQLVKEIGRQVATDK-CIMAMLFLIVI 223 (261)
Q Consensus 145 l~~~~~~L~~s~~~~~ete~ig~~il~~L~~Qre~l~~~~~~l~~i~~~L~~s~~~l~~m~rr~~~dK-~i~~~iill~i 223 (261)
++...+....+++.+.|...+-.-..+.+-.|-..|+.+.+...++..+++.++..|+...++....+ |++++++++-+
T Consensus 227 ~n~~~devrqie~~lvEI~~Lq~ifsehvl~Q~~~Id~I~d~~~~~teNIk~gNe~irka~~~~~~~r~~~lf~llvlsf 306 (316)
T KOG3894|consen 227 LNELLDEVRQIEKRLVEISALQDIFSEHVLQQDQNIDLIHDLQSGATENIKDGNEEIRKAKRNNGGLRVFLLFFLLVLSF 306 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHHhcccchhHHHHHHHHHHH
Confidence 45566778888999999999999999999999999999999999999999999999998777765555 66666555555
Q ss_pred HHHHHHHH
Q 042996 224 GVIAIIIV 231 (261)
Q Consensus 224 ~Ii~vi~~ 231 (261)
.++|+-||
T Consensus 307 ~lLFldwy 314 (316)
T KOG3894|consen 307 SLLFLDWY 314 (316)
T ss_pred HHHHHhhc
Confidence 55555554
No 21
>cd00193 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent
Probab=96.85 E-value=0.013 Score=39.28 Aligned_cols=57 Identities=21% Similarity=0.358 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042996 147 ETDQAIERSKQVVHETINVGTETAAVLKAQTEQMSRIVNELDSIHFSIKKASQLVKE 203 (261)
Q Consensus 147 ~~~~~L~~s~~~~~ete~ig~~il~~L~~Qre~l~~~~~~l~~i~~~L~~s~~~l~~ 203 (261)
+....|......+.+..+++.++...+..|.+.|.++...++.+...+..+.+-|..
T Consensus 3 e~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~~~~~~~~~~~~~~l~k 59 (60)
T cd00193 3 ERDEELEQLEASIGELKQIFLDLGTEVEEQGELLDRIEDNVDNADVNVKRANKRLKK 59 (60)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456778899999999999999999999999999999999999999999999987754
No 22
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.71 E-value=0.065 Score=41.49 Aligned_cols=73 Identities=10% Similarity=0.282 Sum_probs=46.8
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hhhhhHHHHHHHH
Q 042996 148 TDQAIERSKQVVHETINVGTETAAVLKAQTEQMSRIVNELDSIHFSIKKASQLVKEIGRQ----VATDKCIMAMLFL 220 (261)
Q Consensus 148 ~~~~L~~s~~~~~ete~ig~~il~~L~~Qre~l~~~~~~l~~i~~~L~~s~~~l~~m~rr----~~~dK~i~~~iil 220 (261)
.++.+.++++.++|+.+|-.+-.+..-.--+.|....++.+.....-+.=++.-..+.|. .+..+++++++++
T Consensus 27 ~~~k~~~tq~QvdeVv~IMr~NV~KVlER~ekL~~L~drad~L~~~as~F~~~A~klkrk~wWkn~Km~~il~~v~~ 103 (116)
T KOG0860|consen 27 ANDKLQQTQAQVDEVVDIMRENVEKVLERGEKLDELDDRADQLQAGASQFEKTAVKLKRKMWWKNCKMRIILGLVII 103 (116)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666777777888887777777777777888888888777766665544444444444 3444444444443
No 23
>PRK10884 SH3 domain-containing protein; Provisional
Probab=96.08 E-value=0.29 Score=42.01 Aligned_cols=88 Identities=13% Similarity=0.184 Sum_probs=46.2
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 042996 145 MDETDQAIERSKQVVHETINVGTETAAVLKAQTEQMSRIVNELDSIHFSIKKASQLVKEIGRQVATDKCIMAMLFLIVIG 224 (261)
Q Consensus 145 l~~~~~~L~~s~~~~~ete~ig~~il~~L~~Qre~l~~~~~~l~~i~~~L~~s~~~l~~m~rr~~~dK~i~~~iill~i~ 224 (261)
+++.....+.-...+.+..+-..+...+|..+.+.+ ...+......+...+..+....+.... +|+++++.+++++
T Consensus 109 l~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L---~~~l~~~~~~~~~l~~~~~~~~~~~~~-~wf~~Gg~v~~~G 184 (206)
T PRK10884 109 LNNIDNTWNQRTAEMQQKVAQSDSVINGLKEENQKL---KNQLIVAQKKVDAANLQLDDKQRTIIM-QWFMYGGGVAGIG 184 (206)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHchHHHHHH
Confidence 333333333333333333333444445566555555 344444555555555555555554443 5888888877777
Q ss_pred HHHHHHHhhccC
Q 042996 225 VIAIIIVKLVNP 236 (261)
Q Consensus 225 Ii~vi~~k~~~~ 236 (261)
+++-+++-.+.|
T Consensus 185 lllGlilp~l~p 196 (206)
T PRK10884 185 LLLGLLLPHLIP 196 (206)
T ss_pred HHHHHHhccccc
Confidence 776555544443
No 24
>PF04210 MtrG: Tetrahydromethanopterin S-methyltransferase, subunit G ; InterPro: IPR005866 This model describes the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive a sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of a methyl group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane
Probab=94.64 E-value=0.44 Score=33.40 Aligned_cols=55 Identities=20% Similarity=0.429 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhhhHHHHHHHH-HHHHHHHHHHHhh
Q 042996 179 QMSRIVNELDSIHFSIKKASQ-LVKEIGRQVATDKCIMAMLFL-IVIGVIAIIIVKL 233 (261)
Q Consensus 179 ~l~~~~~~l~~i~~~L~~s~~-~l~~m~rr~~~dK~i~~~iil-l~i~Ii~vi~~k~ 233 (261)
....+.+++++++..+.-.+. +-..+.++.-.|=-|+|++++ +++.++++++.++
T Consensus 13 ~~~~i~~rLd~iEeKvEf~~~Ei~Qr~GkkiGRDiGIlYG~v~Glii~~~~~~l~~~ 69 (70)
T PF04210_consen 13 DFNEIMKRLDEIEEKVEFTNAEIAQRAGKKIGRDIGILYGLVIGLIIFIIYIVLSSM 69 (70)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345566667777777766664 446788999999899999876 6666555555443
No 25
>TIGR01149 mtrG N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit G. coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranfersae is membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.
Probab=94.15 E-value=0.71 Score=32.34 Aligned_cols=54 Identities=20% Similarity=0.426 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhhhHHHHHHHH-HHHHHHHHHHHhh
Q 042996 180 MSRIVNELDSIHFSIKKASQ-LVKEIGRQVATDKCIMAMLFL-IVIGVIAIIIVKL 233 (261)
Q Consensus 180 l~~~~~~l~~i~~~L~~s~~-~l~~m~rr~~~dK~i~~~iil-l~i~Ii~vi~~k~ 233 (261)
...+.+++++++..+...+. +-....++.-.|=-|+|++++ +++.+++.+++.+
T Consensus 14 ~~~i~~rLd~iEeKVEf~~~E~~Qr~Gkk~GRDiGIlYG~viGlli~~~~~~l~~~ 69 (70)
T TIGR01149 14 FNEVMKRLDEIEEKVEFVNGEVAQRIGKKVGRDIGILYGLVIGLILFLIYILLSSM 69 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44556666666666666664 446788888889899998776 6555555554443
No 26
>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.66 E-value=4.2 Score=34.95 Aligned_cols=28 Identities=14% Similarity=0.267 Sum_probs=16.5
Q ss_pred hhhhhHHHHHHHHHHHHhHHHHHHHHHH
Q 042996 141 GNRMMDETDQAIERSKQVVHETINVGTE 168 (261)
Q Consensus 141 ~~~~l~~~~~~L~~s~~~~~ete~ig~~ 168 (261)
...++-..+++|.++.+.+.+.-.++.+
T Consensus 119 QR~rLl~nTerLeRst~rl~ds~Ria~E 146 (220)
T KOG1666|consen 119 QRARLLQNTERLERSTDRLKDSQRIALE 146 (220)
T ss_pred HHHHHHhhhHHHHHhHHHHHHHHHHHHH
Confidence 4445555666666666666666665555
No 27
>PRK01026 tetrahydromethanopterin S-methyltransferase subunit G; Provisional
Probab=93.65 E-value=0.9 Score=32.56 Aligned_cols=56 Identities=23% Similarity=0.421 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhhhHHHHHHHH-HHHHHHHHHHHhhc
Q 042996 179 QMSRIVNELDSIHFSIKKASQ-LVKEIGRQVATDKCIMAMLFL-IVIGVIAIIIVKLV 234 (261)
Q Consensus 179 ~l~~~~~~l~~i~~~L~~s~~-~l~~m~rr~~~dK~i~~~iil-l~i~Ii~vi~~k~~ 234 (261)
-...+.+++++++..+..++. +-....++.-.|=-|+|++++ +++.++...+..++
T Consensus 16 d~~~i~~rLD~iEeKVEftn~Ei~Qr~GkkvGRDiGIlYG~viGlli~~i~~~~~~~~ 73 (77)
T PRK01026 16 DFKEIQKRLDEIEEKVEFTNAEIFQRIGKKVGRDIGILYGLVIGLLIVLVYIILSPIF 73 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666777777777777765 446788889999899998776 55555555544443
No 28
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=93.55 E-value=0.044 Score=43.46 Aligned_cols=34 Identities=6% Similarity=0.195 Sum_probs=18.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhccCC-CCccCCCC
Q 042996 212 KCIMAMLFLIVIGVIAIIIVKLVNPN-NKDIRDIP 245 (261)
Q Consensus 212 K~i~~~iill~i~Ii~vi~~k~~~~~-~~~~~~~~ 245 (261)
||++++||+++|+|+|++++.+-+++ .+..+.+.
T Consensus 1 RW~l~~iii~~i~l~~~~~~~~~rRR~r~G~~P~~ 35 (130)
T PF12273_consen 1 RWVLFAIIIVAILLFLFLFYCHNRRRRRRGLQPIY 35 (130)
T ss_pred CeeeHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcC
Confidence 57777777655555555555554433 33444443
No 29
>KOG3065 consensus SNAP-25 (synaptosome-associated protein) component of SNARE complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.51 E-value=0.4 Score=42.89 Aligned_cols=64 Identities=19% Similarity=0.394 Sum_probs=57.8
Q ss_pred hhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042996 141 GNRMMDETDQAIERSKQVVHETINVGTETAAVLKAQTEQMSRIVNELDSIHFSIKKASQLVKEI 204 (261)
Q Consensus 141 ~~~~l~~~~~~L~~s~~~~~ete~ig~~il~~L~~Qre~l~~~~~~l~~i~~~L~~s~~~l~~m 204 (261)
....-++....|.....++.....++.++..+|..|.+.|.+++++++..+..+..+++-++.+
T Consensus 209 ~~~~edeiD~NL~qis~~lg~LK~mA~dmg~Eie~Qn~~Ld~I~~k~d~~d~~v~~~n~R~~kL 272 (273)
T KOG3065|consen 209 EPAAEDEIDENLDQLSAILGRLKNMALDMGSEIESQNERLDRIEDKVDRLDLRVDKANKRAKKL 272 (273)
T ss_pred CChhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHhhhhHHHHHHHHHHhc
Confidence 3445567889999999999999999999999999999999999999999999999999877654
No 30
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=93.02 E-value=6.1 Score=34.96 Aligned_cols=62 Identities=10% Similarity=0.216 Sum_probs=40.2
Q ss_pred hhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042996 140 SGNRMMDETDQAIERSKQVVHETINVGTETAAVLKAQTEQMSRIVNELDSIHFSIKKASQLV 201 (261)
Q Consensus 140 ~~~~~l~~~~~~L~~s~~~~~ete~ig~~il~~L~~Qre~l~~~~~~l~~i~~~L~~s~~~l 201 (261)
.....+.+..+.|+++.....+++.+-...-..|..=..+...+.+.-..+...|..|+.+|
T Consensus 189 ~~~~kL~Dl~~~l~eA~~~~~ea~~ln~~n~~~l~~~~~k~~~l~~~~~~~~~~L~~a~~~L 250 (264)
T PF06008_consen 189 DYNAKLQDLRDLLNEAQNKTREAEDLNRANQKNLEDLEKKKQELSEQQNEVSETLKEAEDLL 250 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566667777777777777777777666666666656666666666666666666655554
No 31
>COG4064 MtrG Tetrahydromethanopterin S-methyltransferase, subunit G [Coenzyme metabolism]
Probab=92.87 E-value=1.2 Score=31.28 Aligned_cols=53 Identities=21% Similarity=0.360 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHhhhhhHHHHHHHH-HHHHHHHHHHHhhc
Q 042996 182 RIVNELDSIHFSIKKASQ-LVKEIGRQVATDKCIMAMLFL-IVIGVIAIIIVKLV 234 (261)
Q Consensus 182 ~~~~~l~~i~~~L~~s~~-~l~~m~rr~~~dK~i~~~iil-l~i~Ii~vi~~k~~ 234 (261)
.+++++++++..+.-.+. +-..+.++.-.|--|+|++++ |++..|.++..+.|
T Consensus 19 e~~kRLdeieekvef~~~Ev~Qr~GkkiGRDIGILYGlVIGlil~~i~~~l~~~~ 73 (75)
T COG4064 19 EIHKRLDEIEEKVEFVNGEVYQRIGKKIGRDIGILYGLVIGLILCMIYILLGVAF 73 (75)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444443 335688888899899998765 55555544444433
No 32
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=90.98 E-value=4.8 Score=29.36 Aligned_cols=55 Identities=22% Similarity=0.329 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 042996 170 AAVLKAQTEQMSRIVNELDSIHFSIKKASQLVKEIGRQVATDKCIMAMLFLIVIGVIAIII 230 (261)
Q Consensus 170 l~~L~~Qre~l~~~~~~l~~i~~~L~~s~~~l~~m~rr~~~dK~i~~~iill~i~Ii~vi~ 230 (261)
+++|..+.+.|...-..... .|+++=+.|-.+-+.-++++++++++++.+|++++
T Consensus 33 L~~L~~kt~~L~~~a~~F~k------~a~~l~r~~~~~~~k~~~i~~~iv~~~~~~i~~~~ 87 (89)
T PF00957_consen 33 LEELEDKTEELSDNAKQFKK------NAKKLKRKMWWRNYKLYIIIIIIVIIIILIIIIVI 87 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhHHHHH------HHHHHHHHHHHHHHHHHHhHHhhhhhhhhHHHHHH
Confidence 45666666666655554443 45555566777777888888888776666665443
No 33
>KOG3202 consensus SNARE protein TLG1/Syntaxin 6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.01 E-value=13 Score=32.67 Aligned_cols=65 Identities=15% Similarity=0.213 Sum_probs=39.2
Q ss_pred hhHHHHHHhhhhhhHHHH---HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042996 132 MTNQQLMDSGNRMMDETD---QAIERSKQVVHETINVGTETAAVLKAQTEQMSRIVNELDSIHFSIKKASQ 199 (261)
Q Consensus 132 ~~~~~ll~~~~~~l~~~~---~~L~~s~~~~~ete~ig~~il~~L~~Qre~l~~~~~~l~~i~~~L~~s~~ 199 (261)
..+++++....+.++.-. .++......+.+.-+.-..+++ ..-.-+++++.+++.....+..-++
T Consensus 141 ~~qqqm~~eQDe~Ld~ls~ti~rlk~~a~~~g~EL~~Q~~llD---dl~~e~d~t~srl~~~~~~l~~v~~ 208 (235)
T KOG3202|consen 141 QLQQQMLQEQDEGLDGLSATVQRLKGMALAMGEELEEQGRLLD---DLDNEMDRTESRLDRVMKRLAKVNR 208 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566654444454444 4444444444444444444554 5566788888898888888877777
No 34
>PF12911 OppC_N: N-terminal TM domain of oligopeptide transport permease C
Probab=89.92 E-value=0.42 Score=31.79 Aligned_cols=38 Identities=21% Similarity=0.308 Sum_probs=27.9
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhccCC
Q 042996 200 LVKEIGRQVATDKCIMAMLFLIVIGVIAIIIVKLVNPN 237 (261)
Q Consensus 200 ~l~~m~rr~~~dK~i~~~iill~i~Ii~vi~~k~~~~~ 237 (261)
..+.+-+|...||..+++.+++++.+++.++.-++-+-
T Consensus 4 ~~~~~~~~f~~nk~a~~gl~il~~~vl~ai~~p~~~p~ 41 (56)
T PF12911_consen 4 PWKDAWRRFRRNKLAVIGLIILLILVLLAIFAPFISPY 41 (56)
T ss_pred HHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 45678899999999988887766666666666666553
No 35
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=89.56 E-value=1.2 Score=30.49 Aligned_cols=30 Identities=10% Similarity=0.279 Sum_probs=19.2
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 042996 199 QLVKEIGRQVATDKCIMAMLFLIVIGVIAI 228 (261)
Q Consensus 199 ~~l~~m~rr~~~dK~i~~~iill~i~Ii~v 228 (261)
.....-.+++.+.+++++++++++++++++
T Consensus 26 ~~~~k~qk~~~~~~~i~~~~~i~~l~v~~~ 55 (59)
T PF09889_consen 26 EEYRKRQKRMRKTQYIFFGIFILFLAVWIF 55 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666777778888887655555433
No 36
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.66 E-value=9.8 Score=29.58 Aligned_cols=51 Identities=12% Similarity=0.199 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Q 042996 170 AAVLKAQTEQMSRIVNELDSIHFSIKKASQLVKEIGRQVATDKCIMAMLFLIVI 223 (261)
Q Consensus 170 l~~L~~Qre~l~~~~~~l~~i~~~L~~s~~~l~~m~rr~~~dK~i~~~iill~i 223 (261)
|++|.+-.++|....+........|.+- +-.-..+++.==++.++|+++++
T Consensus 59 L~~L~drad~L~~~as~F~~~A~klkrk---~wWkn~Km~~il~~v~~i~l~ii 109 (116)
T KOG0860|consen 59 LDELDDRADQLQAGASQFEKTAVKLKRK---MWWKNCKMRIILGLVIIILLVVI 109 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678888888888888877776666543 22223333333356666555333
No 37
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=88.30 E-value=7 Score=27.46 Aligned_cols=18 Identities=22% Similarity=0.266 Sum_probs=10.3
Q ss_pred hhhhHHHHHHHHHHHHHH
Q 042996 209 ATDKCIMAMLFLIVIGVI 226 (261)
Q Consensus 209 ~~dK~i~~~iill~i~Ii 226 (261)
...||+..+++..+++.+
T Consensus 48 ~n~kW~~r~iiGaiI~~i 65 (71)
T PF10779_consen 48 SNTKWIWRTIIGAIITAI 65 (71)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455777777666343333
No 38
>KOG2678 consensus Predicted membrane protein [Function unknown]
Probab=88.23 E-value=16 Score=31.63 Aligned_cols=79 Identities=13% Similarity=0.169 Sum_probs=56.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH-HHHHHHHHHHHhhccC
Q 042996 158 VVHETINVGTETAAVLKAQTEQMSRIVNELDSIHFSIKKASQLVKEIGRQVATDKCIMAMLFL-IVIGVIAIIIVKLVNP 236 (261)
Q Consensus 158 ~~~ete~ig~~il~~L~~Qre~l~~~~~~l~~i~~~L~~s~~~l~~m~rr~~~dK~i~~~iil-l~i~Ii~vi~~k~~~~ 236 (261)
++........+...-|...++++..+...++.-...|+-...-+....+.-..+++.+..||+ ++..|..|++.+||++
T Consensus 163 LArslKtnalAfqsalkeDnQvl~~~~k~~D~N~~~L~~~Serve~y~ksk~s~wf~~~miI~v~~sFVsMiliiqifkk 242 (244)
T KOG2678|consen 163 LARSLKTNALAFQSALKEDNQVLGAAEKGIDVNSQGLMDVSERVEKYDKSKLSYWFYITMIIFVILSFVSMILIIQIFKK 242 (244)
T ss_pred HHHHHHHhHHHHHHHHHhhHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 334444555566677889999999999999998888888888888877776655433333333 5555558888888875
No 39
>PF07423 DUF1510: Protein of unknown function (DUF1510); InterPro: IPR009988 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.
Probab=86.63 E-value=0.9 Score=39.31 Aligned_cols=32 Identities=9% Similarity=0.135 Sum_probs=22.5
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHhhccC
Q 042996 205 GRQVATDKCIMAMLFLIVIGVIAIIIVKLVNP 236 (261)
Q Consensus 205 ~rr~~~dK~i~~~iill~i~Ii~vi~~k~~~~ 236 (261)
.+|-.+|+++=++|++++++||++.|.-||+.
T Consensus 7 ~KrRK~N~iLNiaI~IV~lLIiiva~~lf~~~ 38 (217)
T PF07423_consen 7 QKRRKTNKILNIAIGIVSLLIIIVAYQLFFGG 38 (217)
T ss_pred HHhhhhhhhHHHHHHHHHHHHHHHhhhheecC
Confidence 35566777776777777778878888777754
No 40
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=86.54 E-value=43 Score=34.66 Aligned_cols=41 Identities=24% Similarity=0.460 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCCChHhHHHHHHHHHHHHHHHHHHH
Q 042996 50 KMRECKRLIKEFDREVKDIEGRNDPETNKMLSEKKQSMVKELNSYV 95 (261)
Q Consensus 50 ~l~ea~~ll~qme~Ev~~~~~s~~~~~r~~~~~~~~~~~~~l~~~~ 95 (261)
.+.++...+.+++..+..+ ...-.++...++..+.+++...
T Consensus 247 ~~~~~~~~L~~v~~~~~~L-----~~~~~qL~~~L~~vK~~L~~~l 287 (806)
T PF05478_consen 247 AMQETKELLQNVNSSLKDL-----QEYQSQLRDGLRGVKRDLNNTL 287 (806)
T ss_pred HHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777665443 2223345555666666655543
No 41
>KOG0862 consensus Synaptobrevin/VAMP-like protein SEC22 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.33 E-value=13 Score=32.02 Aligned_cols=81 Identities=14% Similarity=0.180 Sum_probs=55.3
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 042996 149 DQAIERSKQVVHETINVGTETAAVLKAQTEQMSRIVNELDSIHFSIKKASQLVKEIGRQVATDKCIMAMLFLIVIGVIAI 228 (261)
Q Consensus 149 ~~~L~~s~~~~~ete~ig~~il~~L~~Qre~l~~~~~~l~~i~~~L~~s~~~l~~m~rr~~~dK~i~~~iill~i~Ii~v 228 (261)
...+......+.++..+-+..++++..-.+.|......-.+....-..-.+..+.|.++..-++|-.+ ++++++++
T Consensus 133 ~~n~~~~n~el~~v~~im~~niedvl~rg~~l~~l~~~~s~l~~~s~~y~~~a~~in~~sl~~~~aa~----~~~~~~l~ 208 (216)
T KOG0862|consen 133 QRNLLKLNQELQDVQRIMVENLEDVLQRGEVLNALSSMASELSSESRKYPKTAKGINRKSLIRKYAAY----VVFFVLLL 208 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHhhchHHHhhhhhhhcccHHHHhhHHHHHHHHHHHHHHHHHHH----HHHHHHHH
Confidence 57777778888888888888999998888888777766666655555556666777777766665522 23334444
Q ss_pred HHHhh
Q 042996 229 IIVKL 233 (261)
Q Consensus 229 i~~k~ 233 (261)
+|++|
T Consensus 209 f~~~f 213 (216)
T KOG0862|consen 209 FYVRF 213 (216)
T ss_pred HHHHH
Confidence 44444
No 42
>PHA03049 IMV membrane protein; Provisional
Probab=85.58 E-value=1.4 Score=30.55 Aligned_cols=25 Identities=20% Similarity=0.432 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHhhccCCCCccCCCC
Q 042996 221 IVIGVIAIIIVKLVNPNNKDIRDIP 245 (261)
Q Consensus 221 l~i~Ii~vi~~k~~~~~~~~~~~~~ 245 (261)
++++||..|+|.+..++...-..+|
T Consensus 10 ICVaIi~lIvYgiYnkk~~~q~~~p 34 (68)
T PHA03049 10 ICVVIIGLIVYGIYNKKTTTSQNPP 34 (68)
T ss_pred HHHHHHHHHHHHHHhcccccCCCCC
Confidence 4455555555656555433333343
No 43
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=84.41 E-value=0.9 Score=35.72 Aligned_cols=22 Identities=27% Similarity=0.312 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhcc
Q 042996 214 IMAMLFLIVIGVIAIIIVKLVN 235 (261)
Q Consensus 214 i~~~iill~i~Ii~vi~~k~~~ 235 (261)
|.+++++=+|++|++|+|.+-|
T Consensus 69 Ii~gv~aGvIg~Illi~y~irR 90 (122)
T PF01102_consen 69 IIFGVMAGVIGIILLISYCIRR 90 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHH
Confidence 4444444334444444444433
No 44
>PRK11637 AmiB activator; Provisional
Probab=83.51 E-value=41 Score=31.87 Aligned_cols=79 Identities=14% Similarity=0.201 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhchhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCChHhHHHHHHHHHHH
Q 042996 8 DDLAEINGQITDIFRALSNGFQKLEKIKDVNRQSRQLEELTDKMRECKRLIKEFDREVKDIEGRNDPETNKMLSEKKQSM 87 (261)
Q Consensus 8 ~~l~~~e~~~~~i~~~i~~~~~~L~~~~~~~~r~~~i~~i~~~l~ea~~ll~qme~Ev~~~~~s~~~~~r~~~~~~~~~~ 87 (261)
+.+++++.+++.+-++|...-..+. +-...+..++..|..+..-|...+.++..+. ..-..+..++..+
T Consensus 47 ~~l~~l~~qi~~~~~~i~~~~~~~~------~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~-----~ei~~l~~eI~~~ 115 (428)
T PRK11637 47 DQLKSIQQDIAAKEKSVRQQQQQRA------SLLAQLKKQEEAISQASRKLRETQNTLNQLN-----KQIDELNASIAKL 115 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHH
Confidence 3455555555554444432222221 1223344455555555555554444443221 1112334444555
Q ss_pred HHHHHHHHHH
Q 042996 88 VKELNSYVAL 97 (261)
Q Consensus 88 ~~~l~~~~~~ 97 (261)
+.+++..+..
T Consensus 116 q~~l~~~~~~ 125 (428)
T PRK11637 116 EQQQAAQERL 125 (428)
T ss_pred HHHHHHHHHH
Confidence 5555544433
No 45
>PF02468 PsbN: Photosystem II reaction centre N protein (psbN); InterPro: IPR003398 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbN found in PSII. PsbN may have a role in PSII stability, however its actual function unknown. PsbN does not appear to be essential for photoautotrophic growth or normal PSII function.; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane
Probab=82.60 E-value=2 Score=27.35 Aligned_cols=29 Identities=17% Similarity=0.395 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCccCCC
Q 042996 216 AMLFLIVIGVIAIIIVKLVNPNNKDIRDI 244 (261)
Q Consensus 216 ~~iill~i~Ii~vi~~k~~~~~~~~~~~~ 244 (261)
++|..+++++..+-+|.-|+|+++...||
T Consensus 9 i~i~~~lv~~Tgy~iYtaFGppSk~LrDP 37 (43)
T PF02468_consen 9 IFISCLLVSITGYAIYTAFGPPSKELRDP 37 (43)
T ss_pred HHHHHHHHHHHhhhhhheeCCCccccCCc
Confidence 33444777888888888889988887775
No 46
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=80.78 E-value=30 Score=28.36 Aligned_cols=83 Identities=16% Similarity=0.318 Sum_probs=39.4
Q ss_pred hhHHHHHHHHHHHHHHHH---HHhhhhchhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCChHhHHHHHH
Q 042996 6 ISDDLAEINGQITDIFRA---LSNGFQKLEKIKDVNRQSRQLEELTDKMRECKRLIKEFDREVKDIEGRNDPETNKMLSE 82 (261)
Q Consensus 6 ~s~~l~~~e~~~~~i~~~---i~~~~~~L~~~~~~~~r~~~i~~i~~~l~ea~~ll~qme~Ev~~~~~s~~~~~r~~~~~ 82 (261)
|..++..+.+++..+=.+ +.+.+..|...+..++....+..++..+...+.-|..+.-... ...++.+.++..
T Consensus 77 ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~~~~----~vs~ee~~~~~~ 152 (169)
T PF07106_consen 77 LDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRSGSK----PVSPEEKEKLEK 152 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC----CCCHHHHHHHHH
Confidence 334444444444443332 2333333444333455556666666666666665555554321 234555555555
Q ss_pred HHHHHHHHHH
Q 042996 83 KKQSMVKELN 92 (261)
Q Consensus 83 ~~~~~~~~l~ 92 (261)
....+...+.
T Consensus 153 ~~~~~~k~w~ 162 (169)
T PF07106_consen 153 EYKKWRKEWK 162 (169)
T ss_pred HHHHHHHHHH
Confidence 5444444443
No 47
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.25 E-value=50 Score=30.03 Aligned_cols=58 Identities=12% Similarity=0.197 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcC---CCC--hHhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 042996 47 LTDKMRECKRLIKEFDREVKDIEG---RND--PETNKMLSEKKQSMVKELNSYVALKKQHQTN 104 (261)
Q Consensus 47 i~~~l~ea~~ll~qme~Ev~~~~~---s~~--~~~r~~~~~~~~~~~~~l~~~~~~~k~~~~~ 104 (261)
+...-..++..|+.++.+.-..+. +.+ ...|.++..-.+.+...++.|.+....+.+.
T Consensus 87 ~~~~a~~Ik~kL~~~e~~~~~~~~~~~~~~~~r~rrtq~~~~~kkf~~~M~~f~~~~~~~r~~ 149 (297)
T KOG0810|consen 87 IRRRARKIKTKLKALEKENEADETQNRSSAGLRTRRTQTSALSKKLKELMNEFNRTQSKYREE 149 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334555566666655544432 111 1124455544455666666666555555544
No 48
>PHA02650 hypothetical protein; Provisional
Probab=78.30 E-value=3.8 Score=29.51 Aligned_cols=17 Identities=18% Similarity=0.411 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHhhccCC
Q 042996 221 IVIGVIAIIIVKLVNPN 237 (261)
Q Consensus 221 l~i~Ii~vi~~k~~~~~ 237 (261)
+++++.++.|+|.++++
T Consensus 60 ~i~~l~~flYLK~~~r~ 76 (81)
T PHA02650 60 IIVALFSFFVFKGYTRN 76 (81)
T ss_pred HHHHHHHHHHHHHhccc
Confidence 44555588899998875
No 49
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=78.00 E-value=51 Score=29.44 Aligned_cols=50 Identities=10% Similarity=0.202 Sum_probs=29.9
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042996 145 MDETDQAIERSKQVVHETINVGTETAAVLKAQTEQMSRIVNELDSIHFSI 194 (261)
Q Consensus 145 l~~~~~~L~~s~~~~~ete~ig~~il~~L~~Qre~l~~~~~~l~~i~~~L 194 (261)
+......|...+..+.+..+--..-..+|+.|...|..-..+....-..+
T Consensus 153 qk~dk~~Le~kq~~l~~~~e~l~al~~e~e~~~~~L~~qk~e~~~l~~~~ 202 (265)
T COG3883 153 QKEDKKSLEEKQAALEDKLETLVALQNELETQLNSLNSQKAEKNALIAAL 202 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445566666666666666666666666666666666555555444433
No 50
>PF00523 Fusion_gly: Fusion glycoprotein F0; InterPro: IPR000776 The fusion glycoproteins from this family are found in ssRNA negative-strand viruses. This protein directs fusion of viral and cellular membranes, resulting in viral penetration, and can direct fusion of infected cells with adjoining cells, resulting in the formation of syncytia. The mature form is a dimer of polypeptides F1 and F2 linked by a disulphide bond [].; GO: 0006948 induction by virus of host cell-cell fusion; PDB: 2FYZ_D 3MAW_B 4DAG_A 1G5G_D 1SVF_A 2B9B_A 1G2C_M 3RRT_A 3RRR_D 3RKI_A ....
Probab=77.46 E-value=1.7 Score=42.14 Aligned_cols=24 Identities=17% Similarity=0.571 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhch
Q 042996 8 DDLAEINGQITDIFRALSNGFQKL 31 (261)
Q Consensus 8 ~~l~~~e~~~~~i~~~i~~~~~~L 31 (261)
.+++.|+.-+..++.=|...+..+
T Consensus 48 ~~l~~Y~~tl~~Ll~Pi~~~l~~~ 71 (490)
T PF00523_consen 48 QELDEYNNTLTELLTPIQDNLNRI 71 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHH
Confidence 456666666666665555555444
No 51
>KOG0859 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.84 E-value=5.9 Score=33.70 Aligned_cols=60 Identities=13% Similarity=0.154 Sum_probs=46.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042996 149 DQAIERSKQVVHETINVGTETAAVLKAQTEQMSRIVNELDSIHFSIKKASQLVKEIGRQV 208 (261)
Q Consensus 149 ~~~L~~s~~~~~ete~ig~~il~~L~~Qre~l~~~~~~l~~i~~~L~~s~~~l~~m~rr~ 208 (261)
-+.|.+.+..+.|...+-.+-.+.+-+-.|.|+=.-++.....++-..=++.-+.+.|.+
T Consensus 124 id~lskvkaqv~evk~vM~eNIekvldRGekiELLVdKTenl~~~s~~fr~q~r~~~r~m 183 (217)
T KOG0859|consen 124 ISKLAKVKAQVTEVKGVMMENIEKVLDRGEKIELLVDKTENLRSKSFDFRTQGRKLRRKM 183 (217)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhccCeEEeeechhhhhhhhhHHHHHHHHHHHHHH
Confidence 567888888899999988888888888888887777777777776666666666665554
No 52
>PF08058 NPCC: Nuclear pore complex component; InterPro: IPR012578 Proteins containing this domain are components of the nuclear pore complex []. One member of this domain is Nucleoporin POM34 (Q12445 from SWISSPROT) which is thought to have a role in anchoring peripheral Nups into the pore and mediating pore formation [].
Probab=76.63 E-value=5 Score=32.40 Aligned_cols=43 Identities=33% Similarity=0.541 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCCccCCCCCCCCchhhhccccC
Q 042996 213 CIMAMLFLIVIGVIAIIIVKLVNPNNKDIRDIPGLAPPAMARRLLSN 259 (261)
Q Consensus 213 ~i~~~iill~i~Ii~vi~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (261)
++.+++-+++++.|++-.|+++++ .++..|+| =-|. -|+||-.
T Consensus 81 ~~~~~i~~i~~~NIv~al~~L~r~-~D~~~DLP--LT~~-QR~LLGL 123 (144)
T PF08058_consen 81 WILHLIQLIFLLNIVIALWPLFRP-KDDCSDLP--LTPK-QRKLLGL 123 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCC-cCCcccCC--CCHH-HHHHcCC
Confidence 444444557888888999999988 78899998 4444 5666644
No 53
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=76.51 E-value=4.5 Score=28.21 Aligned_cols=15 Identities=20% Similarity=0.516 Sum_probs=7.0
Q ss_pred HHHHHHHHHHhhccC
Q 042996 222 VIGVIAIIIVKLVNP 236 (261)
Q Consensus 222 ~i~Ii~vi~~k~~~~ 236 (261)
+++||..|+|-+..+
T Consensus 11 CVaii~lIlY~iYnr 25 (68)
T PF05961_consen 11 CVAIIGLILYGIYNR 25 (68)
T ss_pred HHHHHHHHHHHHHhc
Confidence 344444444545444
No 54
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=75.97 E-value=59 Score=29.15 Aligned_cols=12 Identities=17% Similarity=0.393 Sum_probs=8.6
Q ss_pred HHHHHHhhccCC
Q 042996 226 IAIIIVKLVNPN 237 (261)
Q Consensus 226 i~vi~~k~~~~~ 237 (261)
++.|+.|++.+.
T Consensus 277 l~Pv~~Kl~~~~ 288 (301)
T PF14362_consen 277 LLPVLFKLLSGK 288 (301)
T ss_pred HHHHHHHHhcCC
Confidence 378888887653
No 55
>PHA02844 putative transmembrane protein; Provisional
Probab=75.78 E-value=4.3 Score=28.89 Aligned_cols=16 Identities=13% Similarity=0.279 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHhhccC
Q 042996 221 IVIGVIAIIIVKLVNP 236 (261)
Q Consensus 221 l~i~Ii~vi~~k~~~~ 236 (261)
+++++..+.|+|.+++
T Consensus 59 ~~~~~~~flYLK~~~r 74 (75)
T PHA02844 59 VFATFLTFLYLKAVPR 74 (75)
T ss_pred HHHHHHHHHHHheecC
Confidence 4444457788888765
No 56
>PRK13183 psbN photosystem II reaction center protein N; Provisional
Probab=74.75 E-value=3 Score=26.84 Aligned_cols=27 Identities=19% Similarity=0.388 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHhhccCCCCccCCC
Q 042996 218 LFLIVIGVIAIIIVKLVNPNNKDIRDI 244 (261)
Q Consensus 218 iill~i~Ii~vi~~k~~~~~~~~~~~~ 244 (261)
|..++++|..+-+|--|+++++..+||
T Consensus 14 i~~lL~~~TgyaiYtaFGppSk~LrDP 40 (46)
T PRK13183 14 ILAILLALTGFGIYTAFGPPSKELDDP 40 (46)
T ss_pred HHHHHHHHhhheeeeccCCcccccCCc
Confidence 334778888888888889988887775
No 57
>PF05283 MGC-24: Multi-glycosylated core protein 24 (MGC-24); InterPro: IPR007947 CD164 is a mucin-like receptor, or sialomucin, with specificity in receptor/ ligand interactions that depends on the structural characteristics of the mucin-like receptor. Its functions include mediating, or regulating, haematopoietic progenitor cell adhesion and the negative regulation of their growth and/or-differentiation. It exists in the native state as a disulphide- linked homodimer of two 80-85kDa subunits. It is usually expressed by CD34+ and CD341o/- haematopoietic stem cells and associated microenvironmental cells. It contains, in its extracellular region, two mucin domains (I and II) linked by a non-mucin domain, which has been predicted to contain intra- disulphide bridges. This receptor may play a key role in haematopoiesis by facilitating the adhesion of human CD34+ cells to bone marrow stroma and by negatively regulating CD34+ CD341o/- haematopoietic progenitor cell proliferation. These effects involve the CD164 class I and/or II epitopes recognised by the monoclonal antibodies (mAbs) 105A5 and 103B2/9E10. These epitopes are carbohydrate-dependent and are located on the N-terminal mucin domain I [, ]. It has been found that murine MGC-24v and rat endolyn share significant sequence similarities with human CD164. However, CD164 lacks the consensus glycosaminoglycan (GAG)-attachment site found in MGC-24; it is possible that GAG-association is responsible for the high molecular weight of the epithelial-derived MGC-24 glycoprotein []. Genomic structure studies have placed CD164 within the mucin-subgroup that comprises multiple exons, and demonstrate the diverse chromosomal distribution of this family of molecules. Molecules with such multiple exons may have sophisticated regulatory mechanisms that involve not only post-translational modifications of the oligosaccharide side chains, but also differential exon usage. Although differences in the intron and exon sizes are seen between the mouse and human genes, the predicted proteins are similar in size and structure, maintaining functionally important motifs that regulate cell proliferation or subcellular distribution []. CD164 is a gene whose expression depends on differential usage of poly- adenylation sites within the 3'-UTR. The conserved distribution of the 3.2- and 1.2-kb CD164 transcripts between mouse and human suggests that (i) a mechanism may exist to regulate tissue-specific polyadenylation, and (ii) differences in polyadenylation are important for the expression and function of CD164 in different tissues. Two other aspects of the structure of CD164 are of particular interest. First, it shares one of several conserved features of a cytokine-binding pocket - in this respect, it is notable that evidence exists for a class of cell-surface sialomucin modulators that directly interact with growth factor receptors to regulate their response to physiological ligands. Second, its cytoplasmic tail contains a C-terminal YHTL motif found in many endocytic membrane proteins or receptors. These Tyr-based motifs bind to adaptor proteins, which mediate the sorting of membrane proteins into transport vesicles from the plasma membrane to the endosomes, and between intracellular compartments.
Probab=74.54 E-value=3 Score=35.22 Aligned_cols=25 Identities=16% Similarity=0.348 Sum_probs=15.0
Q ss_pred hhHHHHHHHHHHHHHH--HHHHHhhcc
Q 042996 211 DKCIMAMLFLIVIGVI--AIIIVKLVN 235 (261)
Q Consensus 211 dK~i~~~iill~i~Ii--~vi~~k~~~ 235 (261)
|-.-|+++|+|+++++ +|+.|||.|
T Consensus 159 D~~SFiGGIVL~LGv~aI~ff~~KF~k 185 (186)
T PF05283_consen 159 DAASFIGGIVLTLGVLAIIFFLYKFCK 185 (186)
T ss_pred chhhhhhHHHHHHHHHHHHHHHhhhcc
Confidence 3345666665555554 666777775
No 58
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=74.24 E-value=1.7e+02 Score=33.56 Aligned_cols=61 Identities=10% Similarity=0.163 Sum_probs=50.9
Q ss_pred hhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042996 141 GNRMMDETDQAIERSKQVVHETINVGTETAAVLKAQTEQMSRIVNELDSIHFSIKKASQLV 201 (261)
Q Consensus 141 ~~~~l~~~~~~L~~s~~~~~ete~ig~~il~~L~~Qre~l~~~~~~l~~i~~~L~~s~~~l 201 (261)
..+..++.+..+..-.+.+.|+++..+..+..++.-.--++...++.+...+++..=+...
T Consensus 1855 ~q~~~dkl~~k~~~~krQleeaE~~~~~~~~k~R~~q~ele~a~erad~~e~~~~~lr~k~ 1915 (1930)
T KOG0161|consen 1855 LQDLVDKLQAKIKQYKRQLEEAEEEANQNLSKYRKLQRELEEAEERADTAESELNKLRSKL 1915 (1930)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667888899999999999999999999999999888888888888888777776544433
No 59
>PF08802 CytB6-F_Fe-S: Cytochrome B6-F complex Fe-S subunit ; InterPro: IPR014909 The cytochrome b6-f complex mediates electron transfer between photosystem II (PSII) and photosystem I (PSI), cyclic electron flow around PSI, and state transitions. The cytochrome b6-f complex has 4 large subunits, these are: cytochrome b6, subunit IV (17 kDa polypeptide, PetD), cytochrome f and the Rieske protein, while the 4 small subunits are: PetG, PetL, PetM and PetN. The complex functions as a dimer. This protein corresponds to the alpha helical transmembrane domain of the cytochrome b6-f complex Rieske iron-sulphur subunit. ; GO: 0009496 plastoquinol-plastocyanin reductase activity, 0051537 2 iron, 2 sulfur cluster binding, 0055114 oxidation-reduction process, 0042651 thylakoid membrane; PDB: 1Q90_R 1VF5_D 2E75_D 2E74_D 2E76_D 2D2C_Q 2ZT9_D.
Probab=73.96 E-value=10 Score=23.63 Aligned_cols=33 Identities=15% Similarity=0.245 Sum_probs=22.3
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhccC
Q 042996 203 EIGRQVATDKCIMAMLFLIVIGVIAIIIVKLVNP 236 (261)
Q Consensus 203 ~m~rr~~~dK~i~~~iill~i~Ii~vi~~k~~~~ 236 (261)
.|.||-.-|. ++.+.+.+..+-.++-|.+||-|
T Consensus 5 dm~RR~lmN~-ll~Gava~~a~~~lyP~~~ffvP 37 (39)
T PF08802_consen 5 DMSRRQLMNL-LLGGAVAVPAGGMLYPYVKFFVP 37 (39)
T ss_dssp -HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHS-
T ss_pred ChhHHHHHHH-HHHhhHHHHHHHHhhhheeEecC
Confidence 5889998885 45555556666677777778754
No 60
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=73.81 E-value=63 Score=28.45 Aligned_cols=60 Identities=8% Similarity=0.205 Sum_probs=27.6
Q ss_pred hhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042996 142 NRMMDETDQAIERSKQVVHETINVGTETAAVLKAQTEQMSRIVNELDSIHFSIKKASQLV 201 (261)
Q Consensus 142 ~~~l~~~~~~L~~s~~~~~ete~ig~~il~~L~~Qre~l~~~~~~l~~i~~~L~~s~~~l 201 (261)
.+.+.+....|..+...+.++...-..+-.-...-+..+..+..+..++...-..+..+|
T Consensus 184 ~~~L~~~~~kL~Dl~~~l~eA~~~~~ea~~ln~~n~~~l~~~~~k~~~l~~~~~~~~~~L 243 (264)
T PF06008_consen 184 RDDLNDYNAKLQDLRDLLNEAQNKTREAEDLNRANQKNLEDLEKKKQELSEQQNEVSETL 243 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444444444444444444444443
No 61
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=73.68 E-value=1.4e+02 Score=32.44 Aligned_cols=72 Identities=10% Similarity=0.121 Sum_probs=47.0
Q ss_pred hhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Q 042996 142 NRMMDETDQAIERSKQVVHETINVGTETAAVLKAQTEQMSRIVNELDSIHFSIKKASQLVKEIGRQVATDKC 213 (261)
Q Consensus 142 ~~~l~~~~~~L~~s~~~~~ete~ig~~il~~L~~Qre~l~~~~~~l~~i~~~L~~s~~~l~~m~rr~~~dK~ 213 (261)
.+........+..+.....+...--......|..-+..+......+..++.-|.-....|..+-+....+|-
T Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~L~p~~gSL~~fL~~~~p~We 553 (1201)
T PF12128_consen 482 QEQQNQAQQAVEELQAEEQELRKERDQAEEELRQARRELEELRAQIAELQRQLDPQKGSLLEFLRKNKPGWE 553 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHhCCCcHH
Confidence 334444455555555555555555556666777777777777888888888888777777777777766643
No 62
>PF12877 DUF3827: Domain of unknown function (DUF3827); InterPro: IPR024606 The function of the proteins in this entry is not currently known, but one of the human proteins (Q9HCM3 from SWISSPROT) has been implicated in pilocytic astrocytomas [, , ]. In the majority of cases of pilocytic astrocytomas a tandem duplication produces an in-frame fusion of the gene encoding this protein and the BRAF oncogene. The resulting fusion protein has constitutive BRAF kinase activity and is capable of transforming cells.
Probab=73.31 E-value=1.5 Score=43.34 Aligned_cols=35 Identities=23% Similarity=0.377 Sum_probs=24.5
Q ss_pred hhhhHHHHHHHH---HHHHHHHHHHHhhccCCCCccCC
Q 042996 209 ATDKCIMAMLFL---IVIGVIAIIIVKLVNPNNKDIRD 243 (261)
Q Consensus 209 ~~dK~i~~~iil---l~i~Ii~vi~~k~~~~~~~~~~~ 243 (261)
-.|-||++++++ +++.||+++||++-+++...|++
T Consensus 266 ~~NlWII~gVlvPv~vV~~Iiiil~~~LCRk~K~eFqp 303 (684)
T PF12877_consen 266 PNNLWIIAGVLVPVLVVLLIIIILYWKLCRKNKLEFQP 303 (684)
T ss_pred CCCeEEEehHhHHHHHHHHHHHHHHHHHhcccccCCCc
Confidence 355578776643 66777789999998876556653
No 63
>PF11694 DUF3290: Protein of unknown function (DUF3290); InterPro: IPR021707 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=72.96 E-value=6.3 Score=32.07 Aligned_cols=42 Identities=17% Similarity=0.377 Sum_probs=27.7
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhccCC-CCccCCC
Q 042996 203 EIGRQVATDKCIMAMLFLIVIGVIAIIIVKLVNPN-NKDIRDI 244 (261)
Q Consensus 203 ~m~rr~~~dK~i~~~iill~i~Ii~vi~~k~~~~~-~~~~~~~ 244 (261)
.+..+.-.+-|+.+++++++++++++..+++++++ +.|.+|.
T Consensus 7 Yl~~q~~~~~~~~~~~i~~ll~~l~~~~~~Y~r~r~~tKyRDL 49 (149)
T PF11694_consen 7 YLQSQQSQNDYLRYILIIILLLVLIFFFIKYLRNRLDTKYRDL 49 (149)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhH
Confidence 44555566667877777766666667777777765 5566653
No 64
>PF04065 Not3: Not1 N-terminal domain, CCR4-Not complex component ; InterPro: IPR007207 The Ccr4-Not complex (Not1, Not2, Not3, Not4 and Not5) is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID []. This domain is the N-terminal region of the Not proteins.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=72.87 E-value=65 Score=28.21 Aligned_cols=53 Identities=13% Similarity=0.361 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHhhhhc-------hhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042996 13 INGQITDIFRALSNGFQK-------LEKIKDVNRQSRQLEELTDKMRECKRLIKEFDREV 65 (261)
Q Consensus 13 ~e~~~~~i~~~i~~~~~~-------L~~~~~~~~r~~~i~~i~~~l~ea~~ll~qme~Ev 65 (261)
+..+|..+++.|..|+.- +.....+.+|-....++...|.-+.++=.|....+
T Consensus 6 LQ~Eid~~lKkv~EG~~~F~~i~~K~~~~~n~~QKEK~E~DLKkEIKKLQR~RdQIK~W~ 65 (233)
T PF04065_consen 6 LQQEIDRTLKKVQEGVEEFDEIYEKVESATNQNQKEKLEADLKKEIKKLQRLRDQIKTWL 65 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 456677777777777543 33323456777888888888888888877777665
No 65
>CHL00020 psbN photosystem II protein N
Probab=72.62 E-value=3 Score=26.51 Aligned_cols=27 Identities=11% Similarity=0.209 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHhhccCCCCccCCC
Q 042996 218 LFLIVIGVIAIIIVKLVNPNNKDIRDI 244 (261)
Q Consensus 218 iill~i~Ii~vi~~k~~~~~~~~~~~~ 244 (261)
|..+++++..+-+|--|+++++..+||
T Consensus 11 i~~ll~~~Tgy~iYtaFGppSk~LrDP 37 (43)
T CHL00020 11 ISGLLVSFTGYALYTAFGQPSKQLRDP 37 (43)
T ss_pred HHHHHHHhhheeeeeccCCchhccCCc
Confidence 334778888888888889988887775
No 66
>TIGR03510 XapX XapX domain. This model describes an uncharacterized small, hydrophobic protein of about 50 amino acids, found between the xapB and xapR genes of the E. coli xanthosine utilization system, and homologous regions in other small proteins, such as the N-terminal region of DUF1427 (Pfam model pfam07235). We name this domain XapX, as it comprises the full length of the protein encoded between the genes for the well-studied XapB and XapR proteins.
Probab=72.31 E-value=6.3 Score=25.88 Aligned_cols=23 Identities=26% Similarity=0.574 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHhhccCCCCccCCCCCCCCch
Q 042996 221 IVIGVIAIIIVKLVNPNNKDIRDIPGLAPPA 251 (261)
Q Consensus 221 l~i~Ii~vi~~k~~~~~~~~~~~~~~~~~~~ 251 (261)
+..++++-+++.+++ +|+||||+
T Consensus 6 l~~G~~vG~~~~~l~--------vp~PAPP~ 28 (49)
T TIGR03510 6 LGAGLLVGALYSLLK--------VPSPAPPV 28 (49)
T ss_pred HHHHHHHHHHHHHhC--------CCCCCCch
Confidence 455555556666664 57889996
No 67
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=71.66 E-value=48 Score=26.18 Aligned_cols=91 Identities=11% Similarity=0.147 Sum_probs=46.9
Q ss_pred chhhHHHHHHHHHHHHHHHHHHhhhhchhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCChHhHHHHHHH
Q 042996 4 SSISDDLAEINGQITDIFRALSNGFQKLEKIKDVNRQSRQLEELTDKMRECKRLIKEFDREVKDIEGRNDPETNKMLSEK 83 (261)
Q Consensus 4 ~~~s~~l~~~e~~~~~i~~~i~~~~~~L~~~~~~~~r~~~i~~i~~~l~ea~~ll~qme~Ev~~~~~s~~~~~r~~~~~~ 83 (261)
.++-+.|+++|.+++.+.+.=.......... .+.....+.+....-.+.++.+..+...- .-.-++..|..-
T Consensus 23 ~~v~~~l~~LEae~q~L~~kE~~r~~~~k~~--ae~a~~~L~~~~~~~~~i~e~~~kl~~~~------~~r~yk~eYk~l 94 (126)
T PF09403_consen 23 ASVESELNQLEAEYQQLEQKEEARYNEEKQE--AEAAEAELAELKELYAEIEEKIEKLKQDS------KVRWYKDEYKEL 94 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHG------GGSTTHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhHHHHHHHHHHhc------chhHHHHHHHHH
Confidence 4566778888888888874433333222221 12223344444444444455544444331 112246677777
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 042996 84 KQSMVKELNSYVALKKQHQ 102 (261)
Q Consensus 84 ~~~~~~~l~~~~~~~k~~~ 102 (261)
++.|+.-++.+....+.-+
T Consensus 95 lk~y~~~~~~L~k~I~~~e 113 (126)
T PF09403_consen 95 LKKYKDLLNKLDKEIAEQE 113 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 7777766666665544333
No 68
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.83 E-value=79 Score=28.32 Aligned_cols=84 Identities=10% Similarity=0.100 Sum_probs=45.7
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 042996 145 MDETDQAIERSKQVVHETINVGTETAAVLKAQTEQMSRIVNELDSIHFSIKKASQLVKEIGRQVATDKCIMAMLFLIVIG 224 (261)
Q Consensus 145 l~~~~~~L~~s~~~~~ete~ig~~il~~L~~Qre~l~~~~~~l~~i~~~L~~s~~~l~~m~rr~~~dK~i~~~iill~i~ 224 (261)
..+-...+...+.+..+.-.+=.+=.+..+.=-+.++++...+..-..+|.+|.+.=+...+..+.-.+|+.+++++++.
T Consensus 182 I~~lE~dI~dvN~IFkdL~~lV~eQG~~VDsIe~nve~a~~nveqg~~~L~kA~~yq~~~~k~~~~ll~v~~~v~lii~l 261 (269)
T KOG0811|consen 182 IEQLEADIIDVNEIFKDLGSLVHEQGELVDSIEANVENASVNVEQGTENLRKAAKYQRKARKKKCILLLVGGPVGLIIGL 261 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHH
Confidence 33334444444444444433333333333444456667777777777777777777777766666665555555544444
Q ss_pred HHHH
Q 042996 225 VIAI 228 (261)
Q Consensus 225 Ii~v 228 (261)
+|+.
T Consensus 262 ~i~~ 265 (269)
T KOG0811|consen 262 IIAG 265 (269)
T ss_pred HHHH
Confidence 4433
No 69
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=70.29 E-value=1.7e+02 Score=31.86 Aligned_cols=25 Identities=8% Similarity=0.028 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 042996 42 RQLEELTDKMRECKRLIKEFDREVK 66 (261)
Q Consensus 42 ~~i~~i~~~l~ea~~ll~qme~Ev~ 66 (261)
.+..+++..-+.|+.+..++|.-+.
T Consensus 1546 ~L~s~A~~a~~~A~~v~~~ae~V~e 1570 (1758)
T KOG0994|consen 1546 NLQSEAERARSRAEDVKGQAEDVVE 1570 (1758)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 4445555555666666666664443
No 70
>PRK07021 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=70.05 E-value=7.8 Score=31.76 Aligned_cols=25 Identities=12% Similarity=0.114 Sum_probs=12.8
Q ss_pred hHHHHHHHH-HHHHHHHHHHHhhccC
Q 042996 212 KCIMAMLFL-IVIGVIAIIIVKLVNP 236 (261)
Q Consensus 212 K~i~~~iil-l~i~Ii~vi~~k~~~~ 236 (261)
|++++++++ ++++..+..+|.|+++
T Consensus 17 kl~ii~l~~l~l~~~g~gg~~~~~~~ 42 (162)
T PRK07021 17 KLWLIILILLLLAAAAGAGYSWWLSK 42 (162)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHhhc
Confidence 444444333 4444455566656665
No 71
>PF06682 DUF1183: Protein of unknown function (DUF1183); InterPro: IPR009567 This family consists of several eukaryotic proteins of around 360 residues in length. The function of this family is unknown.
Probab=70.00 E-value=5.9 Score=36.28 Aligned_cols=18 Identities=28% Similarity=0.514 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHhhcc
Q 042996 218 LFLIVIGVIAIIIVKLVN 235 (261)
Q Consensus 218 iill~i~Ii~vi~~k~~~ 235 (261)
++++|++||++|+|+++.
T Consensus 160 f~ii~l~vla~ivY~~~~ 177 (318)
T PF06682_consen 160 FWIIFLLVLAFIVYSLFL 177 (318)
T ss_pred hhHHHHHHHHHHHHHHHh
Confidence 333566666667777655
No 72
>PRK07718 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=69.44 E-value=8.4 Score=30.93 Aligned_cols=27 Identities=37% Similarity=0.465 Sum_probs=12.4
Q ss_pred hhhHHHHHHHH-HHHHHHHHHHHhhccC
Q 042996 210 TDKCIMAMLFL-IVIGVIAIIIVKLVNP 236 (261)
Q Consensus 210 ~dK~i~~~iil-l~i~Ii~vi~~k~~~~ 236 (261)
..|.+++++++ ++++.+....|.|+.+
T Consensus 2 kkkl~~i~~i~l~~l~~~g~~~~~~~~~ 29 (142)
T PRK07718 2 KNKLIKIMLIILIVIALIGTAALVLVMG 29 (142)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 34556555443 4444444444444433
No 73
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=69.07 E-value=67 Score=26.82 Aligned_cols=24 Identities=21% Similarity=0.271 Sum_probs=11.0
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHH
Q 042996 74 PETNKMLSEKKQSMVKELNSYVAL 97 (261)
Q Consensus 74 ~~~r~~~~~~~~~~~~~l~~~~~~ 97 (261)
|+.+..+..-.+.|.+.+.+-++.
T Consensus 151 pedk~~v~~~y~~~~~~wrk~krm 174 (201)
T KOG4603|consen 151 PEDKEQVYREYQKYCKEWRKRKRM 174 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444455555544443
No 74
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=68.33 E-value=45 Score=24.51 Aligned_cols=58 Identities=16% Similarity=0.369 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042996 44 LEELTDKMRECKRLIKEFDREVKDIEGRNDPETNKMLSEKKQSMVKELNSYVALKKQHQT 103 (261)
Q Consensus 44 i~~i~~~l~ea~~ll~qme~Ev~~~~~s~~~~~r~~~~~~~~~~~~~l~~~~~~~k~~~~ 103 (261)
|..++.++..+..-++.++.-++. ...+++.|..+......+.+.+..+..+++.+..
T Consensus 7 Id~lEekl~~cr~~le~ve~rL~~--~eLs~e~R~~lE~E~~~l~~~l~~~E~eL~~Lrk 64 (85)
T PF15188_consen 7 IDGLEEKLAQCRRRLEAVESRLRR--RELSPEARRSLEKELNELKEKLENNEKELKLLRK 64 (85)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHcc--cCCChHHHHHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 444556666666666666666553 2345666666666666666666666655554443
No 75
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=66.42 E-value=83 Score=28.97 Aligned_cols=67 Identities=7% Similarity=0.199 Sum_probs=53.0
Q ss_pred hhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042996 141 GNRMMDETDQAIERSKQVVHETINVGTETAAVLKAQTEQMSRIVNELDSIHFSIKKASQLVKEIGRQ 207 (261)
Q Consensus 141 ~~~~l~~~~~~L~~s~~~~~ete~ig~~il~~L~~Qre~l~~~~~~l~~i~~~L~~s~~~l~~m~rr 207 (261)
....+......|...+..+.+.++-=...-.++.............+..+...|.+|.+++..+.--
T Consensus 226 a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L~~E 292 (344)
T PF12777_consen 226 AEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISGLSGE 292 (344)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhhcch
Confidence 4556777888888888888887776666666777767778888889999999999999999886654
No 76
>PF12669 P12: Virus attachment protein p12 family
Probab=66.06 E-value=3.5 Score=27.98 Aligned_cols=16 Identities=25% Similarity=0.519 Sum_probs=8.3
Q ss_pred HHHHHHHH-HHHhhccC
Q 042996 221 IVIGVIAI-IIVKLVNP 236 (261)
Q Consensus 221 l~i~Ii~v-i~~k~~~~ 236 (261)
|+++++++ +++++++.
T Consensus 7 Ii~~~~~~v~~r~~~k~ 23 (58)
T PF12669_consen 7 IILAAVAYVAIRKFIKD 23 (58)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444443 45777754
No 77
>PF12126 DUF3583: Protein of unknown function (DUF3583); InterPro: IPR021978 This domain is found in eukaryotes, and is typically between 302 and 338 amino acids in length. It is found in association with PF00097 from PFAM and PF00643 from PFAM. Most members are promyelocytic leukemia proteins, and this family lies towards the C terminus.
Probab=66.02 E-value=61 Score=29.37 Aligned_cols=59 Identities=15% Similarity=0.312 Sum_probs=43.9
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHhhhhchhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042996 3 LSSISDDLAEINGQITDIFRALSNGFQKLEKIKDVNRQSRQLEELTDKMRECKRLIKEFDREVK 66 (261)
Q Consensus 3 ~~~~s~~l~~~e~~~~~i~~~i~~~~~~L~~~~~~~~r~~~i~~i~~~l~ea~~ll~qme~Ev~ 66 (261)
++.|...|..-+.-|....+++.+.++.|.+. |..+-..|...+.+.=..+..-|.|+-
T Consensus 1 l~~mtq~LqeQ~~~F~aahaqm~sav~qL~~~-----r~~teelIr~rVrq~V~hVqaqEreLL 59 (324)
T PF12126_consen 1 LDAMTQALQEQDGAFGAAHAQMRSAVSQLGRA-----RADTEELIRARVRQVVAHVQAQERELL 59 (324)
T ss_pred CcHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH-----HhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788999999999999999999999888763 444455566666666666666666654
No 78
>PF12495 Vip3A_N: Vegetative insecticide protein 3A N terminal ; InterPro: IPR022180 This family of proteins is found in bacteria. Proteins in this family are typically between 170 and 789 amino acids in length. The family is found in association with PF02018 from PFAM. Vip3A represents a novel class of proteins insecticidal to lepidopteran insect larvae.
Probab=65.04 E-value=47 Score=26.22 Aligned_cols=84 Identities=13% Similarity=0.206 Sum_probs=57.2
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Q 042996 135 QQLMDSGNRMMDETDQAIERSKQVVHETINVGTETAAVLKAQTEQMSRIVNELDSIHFSIKKASQLVKEIGRQVATDKCI 214 (261)
Q Consensus 135 ~~ll~~~~~~l~~~~~~L~~s~~~~~ete~ig~~il~~L~~Qre~l~~~~~~l~~i~~~L~~s~~~l~~m~rr~~~dK~i 214 (261)
|+++..-...++....+|...-....=-.+...+++.--..|...+.++..+++.+.+.|..--.-+.+|..-+++.-+.
T Consensus 44 q~lln~is~kldging~l~dliaqgnln~el~ke~lkianeqn~~ln~vn~~l~~in~~l~~ylpkitsmls~vmkqny~ 123 (177)
T PF12495_consen 44 QQLLNQISDKLDGINGSLNDLIAQGNLNSELSKEILKIANEQNQMLNNVNNQLNSINSMLNTYLPKITSMLSDVMKQNYV 123 (177)
T ss_pred HHHHHHhcccccccCCcHHHHHHcCCccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhh
Confidence 34444344444444444444444444444566677777789999999999999999999988877788887777766666
Q ss_pred HHHH
Q 042996 215 MAML 218 (261)
Q Consensus 215 ~~~i 218 (261)
+.+-
T Consensus 124 lslq 127 (177)
T PF12495_consen 124 LSLQ 127 (177)
T ss_pred hhhh
Confidence 5543
No 79
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=65.01 E-value=2e+02 Score=30.77 Aligned_cols=37 Identities=22% Similarity=0.249 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Q 042996 180 MSRIVNELDSIHFSIKKASQLVKEIGRQVATDKCIMAM 217 (261)
Q Consensus 180 l~~~~~~l~~i~~~L~~s~~~l~~m~rr~~~dK~i~~~ 217 (261)
...+..+..++.-.+..-...|+.+ ++..+||+-.|+
T Consensus 438 ~~~i~~~i~~l~k~i~~~~~~l~~l-k~~k~dkvs~FG 474 (1074)
T KOG0250|consen 438 KEHIEGEILQLRKKIENISEELKDL-KKTKTDKVSAFG 474 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-Hhcccchhhhcc
Confidence 3333333333333333333344443 344566666555
No 80
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=64.77 E-value=97 Score=27.10 Aligned_cols=47 Identities=15% Similarity=0.188 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHHHH
Q 042996 180 MSRIVNELDSIHFSIKKASQLVKEIGRQVAT--DKCIMAMLFLIVIGVI 226 (261)
Q Consensus 180 l~~~~~~l~~i~~~L~~s~~~l~~m~rr~~~--dK~i~~~iill~i~Ii 226 (261)
|..-..-++.+...++..-.-|+.-..|+.. .|..-|++++++++++
T Consensus 190 l~~D~~~L~~~~~~~d~n~~~l~~~~~rl~~~~~~~~~~~~~~~i~~v~ 238 (251)
T PF09753_consen 190 LKEDNKVLDRTEEGLDRNLSSLKRESKRLKEHSSKSWGCWTWLMIFVVI 238 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 3333445555556666665666655555433 2333444444444444
No 81
>PF04639 Baculo_E56: Baculoviral E56 protein, specific to ODV envelope; InterPro: IPR006733 This family represents the E56 protein, which is localized to the occlusion derived virus (ODV) envelope, but not to the budded virus (BV) envelope []. Signals necessary for transport and/or retention into this structure are believed to be found within the C-terminal portion of ODV-E56.; GO: 0019031 viral envelope
Probab=63.49 E-value=4.2 Score=36.47 Aligned_cols=24 Identities=21% Similarity=0.191 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccC
Q 042996 213 CIMAMLFLIVIGVIAIIIVKLVNP 236 (261)
Q Consensus 213 ~i~~~iill~i~Ii~vi~~k~~~~ 236 (261)
+|+++++++++++|+|+++|++.+
T Consensus 280 iil~IG~vl~i~~Ig~~ifK~~~~ 303 (305)
T PF04639_consen 280 IILIIGGVLLIVFIGYFIFKRLMN 303 (305)
T ss_pred HHHHHHHHHHHHHhhheeeEeecc
Confidence 444444556677777777777654
No 82
>PHA03240 envelope glycoprotein M; Provisional
Probab=63.03 E-value=7.3 Score=33.57 Aligned_cols=20 Identities=30% Similarity=0.469 Sum_probs=9.1
Q ss_pred HHHHHHH-HHHHHHHHHHHhh
Q 042996 214 IMAMLFL-IVIGVIAIIIVKL 233 (261)
Q Consensus 214 i~~~iil-l~i~Ii~vi~~k~ 233 (261)
.+|+|++ |+|.||+++++||
T Consensus 213 ~~WIiilIIiIiIIIL~cfKi 233 (258)
T PHA03240 213 IAWIFIAIIIIIVIILFFFKI 233 (258)
T ss_pred HhHHHHHHHHHHHHHHHHHhc
Confidence 4455444 3344444455554
No 83
>PHA02681 ORF089 virion membrane protein; Provisional
Probab=62.86 E-value=11 Score=27.35 Aligned_cols=23 Identities=13% Similarity=0.275 Sum_probs=10.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhh
Q 042996 211 DKCIMAMLFLIVIGVIAIIIVKL 233 (261)
Q Consensus 211 dK~i~~~iill~i~Ii~vi~~k~ 233 (261)
|-+++.+++.|++.+|..+|.+.
T Consensus 5 Da~~~~V~V~IVclliya~YRR~ 27 (92)
T PHA02681 5 DALLTVIVISIVCYIVIMMYRRS 27 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 43444333335555555555444
No 84
>PRK15374 pathogenicity island 1 effector protein SipB; Provisional
Probab=62.82 E-value=1.6e+02 Score=29.05 Aligned_cols=51 Identities=4% Similarity=0.048 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCCCChHhHHHHHHHHHHHHHHHHHHHH
Q 042996 44 LEELTDKMRECKRLIKEFDREVKDIEGRNDPETNKMLSEKKQSMVKELNSYVA 96 (261)
Q Consensus 44 i~~i~~~l~ea~~ll~qme~Ev~~~~~s~~~~~r~~~~~~~~~~~~~l~~~~~ 96 (261)
...++..+++++.-+++++..+....+..|. ..+-+..+.+-+.++...+.
T Consensus 150 ~~~Aq~~l~~aq~~l~~lq~~a~~~~P~sp~--l~~a~~av~~a~~~a~~a~~ 200 (593)
T PRK15374 150 TDTAKSVYDAAEKKLTQAQNKLQSLDPADPG--YAQAEAAVEQAGKEATEAKE 200 (593)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhhcCCCChh--HHHHHHHHHHHHHHHHHHHH
Confidence 5556777778888888777776665543333 23344445555555554443
No 85
>PF13131 DUF3951: Protein of unknown function (DUF3951)
Probab=62.56 E-value=15 Score=24.21 Aligned_cols=28 Identities=18% Similarity=0.019 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHhhccCCCCccCCCCCCC
Q 042996 221 IVIGVIAIIIVKLVNPNNKDIRDIPGLA 248 (261)
Q Consensus 221 l~i~Ii~vi~~k~~~~~~~~~~~~~~~~ 248 (261)
+++.|.++-|.-|+++..-..--+||-.
T Consensus 15 I~~lIgfity~mfV~K~s~q~~YTP~d~ 42 (53)
T PF13131_consen 15 IFFLIGFITYKMFVKKASPQIYYTPFDS 42 (53)
T ss_pred HHHHHHHHHHHhheecCCCceeeccchh
Confidence 3444445556666766555666667643
No 86
>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional
Probab=62.44 E-value=9.3 Score=30.25 Aligned_cols=28 Identities=14% Similarity=0.272 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHhhccCCCCccCCCC
Q 042996 218 LFLIVIGVIAIIIVKLVNPNNKDIRDIP 245 (261)
Q Consensus 218 iill~i~Ii~vi~~k~~~~~~~~~~~~~ 245 (261)
.++|++.++++++++|.|+..-..||.-
T Consensus 110 l~~i~is~~~~~~yr~~r~~~~~~~~~~ 137 (139)
T PHA03099 110 LVGIIITCCLLSVYRFTRRTKLPLQDMV 137 (139)
T ss_pred HHHHHHHHHHHhhheeeecccCchhhcc
Confidence 3345566668888999988766666543
No 87
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=62.07 E-value=11 Score=29.67 Aligned_cols=32 Identities=25% Similarity=0.400 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCCccCCCC
Q 042996 213 CIMAMLFLIVIGVIAIIIVKLVNPNNKDIRDIP 245 (261)
Q Consensus 213 ~i~~~iill~i~Ii~vi~~k~~~~~~~~~~~~~ 245 (261)
+++++||+ +|++|+|++.+..|+.+-.+++.|
T Consensus 72 gv~aGvIg-~Illi~y~irR~~Kk~~~~~~p~P 103 (122)
T PF01102_consen 72 GVMAGVIG-IILLISYCIRRLRKKSSSDVQPLP 103 (122)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHS-----------
T ss_pred HHHHHHHH-HHHHHHHHHHHHhccCCCCCCCCC
Confidence 56666665 455666777878888666666645
No 88
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=61.37 E-value=9.3 Score=27.79 Aligned_cols=20 Identities=40% Similarity=0.640 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 042996 214 IMAMLFLIVIGVIAIIIVKL 233 (261)
Q Consensus 214 i~~~iill~i~Ii~vi~~k~ 233 (261)
++.++.+++.+|+.+++|.+
T Consensus 6 i~~iialiv~~iiaIvvW~i 25 (81)
T PF00558_consen 6 ILAIIALIVALIIAIVVWTI 25 (81)
T ss_dssp --HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444443333
No 89
>PRK08455 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=61.31 E-value=9.2 Score=32.14 Aligned_cols=18 Identities=11% Similarity=0.455 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHhhccCC
Q 042996 220 LIVIGVIAIIIVKLVNPN 237 (261)
Q Consensus 220 ll~i~Ii~vi~~k~~~~~ 237 (261)
+++++++.+++|.+++.+
T Consensus 28 llll~~~G~~~~~~~~~~ 45 (182)
T PRK08455 28 VLLLLIVGVIAMLLMGSK 45 (182)
T ss_pred HHHHHHHHHHHHHHhcCC
Confidence 344444445555455443
No 90
>cd01324 cbb3_Oxidase_CcoQ Cytochrome cbb oxidase CcoQ. Cytochrome cbb3 oxidase, the terminal oxidase in the respiratory chains of proteobacteria, is a multi-chain transmembrane protein located in the cell membrane. Like other cytochrome oxidases, it catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. Found exclusively in proteobacteria, cbb3 is believed to be a modern enzyme that has evolved independently to perform a specialized function in microaerobic energy metabolism. The cbb3 operon contains four genes (ccoNOQP or fixNOQP), with ccoN coding for subunit I. Instead of a CuA-containing subunit II analogous to other cytochrome oxidases, cbb3 utilizes subunits ccoO and ccoP, which contain one and two hemes, respectively, to transfer electrons to the binuclear center. ccoQ, the fourth subunit, is a single transmembrane helix protein. It has been shown to protect the core complex from proteolytic degradation by serine proteases. See cd00919, cd01322
Probab=61.18 E-value=7.9 Score=25.20 Aligned_cols=12 Identities=25% Similarity=0.487 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHH
Q 042996 220 LIVIGVIAIIIV 231 (261)
Q Consensus 220 ll~i~Ii~vi~~ 231 (261)
+++++|+++.|+
T Consensus 21 ~~Figiv~wa~~ 32 (48)
T cd01324 21 LFFLGVVVWAFR 32 (48)
T ss_pred HHHHHHHHHHhC
Confidence 356666555554
No 91
>PRK11677 hypothetical protein; Provisional
Probab=61.07 E-value=11 Score=30.17 Aligned_cols=25 Identities=20% Similarity=0.218 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCC
Q 042996 213 CIMAMLFLIVIGVIAIIIVKLVNPN 237 (261)
Q Consensus 213 ~i~~~iill~i~Ii~vi~~k~~~~~ 237 (261)
|++++|.+++-+||.+++.+++.++
T Consensus 3 W~~a~i~livG~iiG~~~~R~~~~~ 27 (134)
T PRK11677 3 WEYALIGLVVGIIIGAVAMRFGNRK 27 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccch
Confidence 5555555555555577777776554
No 92
>PF15206 FAM209: FAM209 family
Probab=60.62 E-value=8.3 Score=30.90 Aligned_cols=26 Identities=23% Similarity=0.451 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHhhccCCCC-ccCCCCC
Q 042996 221 IVIGVIAIIIVKLVNPNNK-DIRDIPG 246 (261)
Q Consensus 221 l~i~Ii~vi~~k~~~~~~~-~~~~~~~ 246 (261)
|++.+++|+++||-+.++| |.+.+|+
T Consensus 44 L~Fvv~lyvilKf~g~~~K~keq~p~g 70 (150)
T PF15206_consen 44 LLFVVVLYVILKFRGDSEKNKEQSPPG 70 (150)
T ss_pred HHHHHHHHheeEeccCcccccccCCCc
Confidence 5666678999999887655 7777775
No 93
>KOG1693 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=60.57 E-value=59 Score=27.80 Aligned_cols=21 Identities=19% Similarity=0.520 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHhhccCCCCc
Q 042996 220 LIVIGVIAIIIVKLVNPNNKD 240 (261)
Q Consensus 220 ll~i~Ii~vi~~k~~~~~~~~ 240 (261)
+++|.|+-|+++|+|.....+
T Consensus 186 vv~iSi~Qv~ilk~fFt~~r~ 206 (209)
T KOG1693|consen 186 VVVISIAQVFILKFFFTDRRK 206 (209)
T ss_pred HHHHHHHHHHHHHHHHhccCc
Confidence 377888878888887764443
No 94
>PRK11637 AmiB activator; Provisional
Probab=60.53 E-value=1.5e+02 Score=27.97 Aligned_cols=18 Identities=0% Similarity=0.065 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 042996 81 SEKKQSMVKELNSYVALK 98 (261)
Q Consensus 81 ~~~~~~~~~~l~~~~~~~ 98 (261)
+.++.....++..++..+
T Consensus 102 ~~ei~~l~~eI~~~q~~l 119 (428)
T PRK11637 102 NKQIDELNASIAKLEQQQ 119 (428)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444333
No 95
>PF10717 ODV-E18: Occlusion-derived virus envelope protein ODV-E18; InterPro: IPR019655 Baculovirus occlusion-derived virus (ODV) derives its envelope from an intranuclear membrane source. Occlusion-derived viral envelope proteins that are detected in viral-induced intranuclear microvesicles, but not detected in the plasma membrane, cytoplasmic membranes, or the nuclear envelope. This entry represents ODV-E18 protein which is encoded by baculovirus late genes with transcription initiating from a TAAG motif. ODV-E18 exists as a dimer in the ODV envelope, which contains a hydrophobic domain that putatively acts as a target or retention signal for intranuclear microvesicles []. ; GO: 0019031 viral envelope
Probab=60.33 E-value=21 Score=26.04 Aligned_cols=11 Identities=27% Similarity=0.600 Sum_probs=4.2
Q ss_pred HHHHHHHHHHH
Q 042996 221 IVIGVIAIIIV 231 (261)
Q Consensus 221 l~i~Ii~vi~~ 231 (261)
+||.|++|+++
T Consensus 34 LVIIiLlImlf 44 (85)
T PF10717_consen 34 LVIIILLIMLF 44 (85)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 96
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=58.79 E-value=11 Score=33.86 Aligned_cols=16 Identities=19% Similarity=0.088 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHhhccC
Q 042996 221 IVIGVIAIIIVKLVNP 236 (261)
Q Consensus 221 l~i~Ii~vi~~k~~~~ 236 (261)
.|++||+|||+..-|+
T Consensus 272 ~vvliiLYiWlyrrRK 287 (295)
T TIGR01478 272 TVVLIILYIWLYRRRK 287 (295)
T ss_pred HHHHHHHHHHHHHhhc
Confidence 4455555555544433
No 97
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=58.76 E-value=1.9e+02 Score=28.56 Aligned_cols=25 Identities=24% Similarity=0.519 Sum_probs=12.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042996 38 NRQSRQLEELTDKMRECKRLIKEFDREV 65 (261)
Q Consensus 38 ~~r~~~i~~i~~~l~ea~~ll~qme~Ev 65 (261)
+.....+..+...| +.+-..|+.|+
T Consensus 278 ~~~~~~~~~i~~~I---d~Lyd~lekE~ 302 (569)
T PRK04778 278 DEAEEKNEEIQERI---DQLYDILEREV 302 (569)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 44445555555555 33344455554
No 98
>PHA03049 IMV membrane protein; Provisional
Probab=58.66 E-value=15 Score=25.61 Aligned_cols=22 Identities=27% Similarity=0.458 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHH-HHHHHhhc
Q 042996 213 CIMAMLFLIVIGVI-AIIIVKLV 234 (261)
Q Consensus 213 ~i~~~iill~i~Ii-~vi~~k~~ 234 (261)
+++++|++.+++.| .-||-|-.
T Consensus 5 ~~l~iICVaIi~lIvYgiYnkk~ 27 (68)
T PHA03049 5 IILVIICVVIIGLIVYGIYNKKT 27 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHhccc
Confidence 56667776454444 55555543
No 99
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=58.62 E-value=7.1 Score=29.50 Aligned_cols=16 Identities=31% Similarity=0.179 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHhhccC
Q 042996 221 IVIGVIAIIIVKLVNP 236 (261)
Q Consensus 221 l~i~Ii~vi~~k~~~~ 236 (261)
+++++|++++|.|+-.
T Consensus 72 v~IlVily~IyYFVIL 87 (101)
T PF06024_consen 72 VCILVILYAIYYFVIL 87 (101)
T ss_pred HHHHHHHhhheEEEEE
Confidence 3444444555555443
No 100
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=58.46 E-value=2.9e+02 Score=30.42 Aligned_cols=20 Identities=15% Similarity=0.240 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 042996 78 KMLSEKKQSMVKELNSYVAL 97 (261)
Q Consensus 78 ~~~~~~~~~~~~~l~~~~~~ 97 (261)
..+..++..+..++..+...
T Consensus 884 ~~le~~L~el~~el~~l~~~ 903 (1311)
T TIGR00606 884 QQFEEQLVELSTEVQSLIRE 903 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444433
No 101
>PHA03030 hypothetical protein; Provisional
Probab=58.46 E-value=7.6 Score=29.42 Aligned_cols=24 Identities=17% Similarity=0.584 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccC
Q 042996 213 CIMAMLFLIVIGVIAIIIVKLVNP 236 (261)
Q Consensus 213 ~i~~~iill~i~Ii~vi~~k~~~~ 236 (261)
|++++++++++.++++.|..+.++
T Consensus 3 ci~~ili~lfifl~iffYI~~IkR 26 (122)
T PHA03030 3 CIFLILIFLFIFLFIFFYIRIIKR 26 (122)
T ss_pred eehHHHHHHHHHHHHHHHheeeec
Confidence 444444444444444444444444
No 102
>PF08114 PMP1_2: ATPase proteolipid family; InterPro: IPR012589 This family consists of small proteolipids associated with the plasma membrane H+ ATPase. Two proteolipids (PMP1 and PMP2) are associated with the ATPase and both genes are similarly expressed in the wild-type strain of yeast. No modification of the level of transcription of one PMP gene is detected in a strain deleted of the other. Though both proteolipids show similarity with other small proteolipids associated with other cation -transporting ATPases, their functions remain unclear [].
Probab=58.28 E-value=11 Score=23.66 Aligned_cols=19 Identities=26% Similarity=0.319 Sum_probs=11.7
Q ss_pred HHHHHHHHH-HHHHHhhccC
Q 042996 218 LFLIVIGVI-AIIIVKLVNP 236 (261)
Q Consensus 218 iill~i~Ii-~vi~~k~~~~ 236 (261)
+.+..++|+ .++|-||..+
T Consensus 17 Vglv~i~iva~~iYRKw~aR 36 (43)
T PF08114_consen 17 VGLVGIGIVALFIYRKWQAR 36 (43)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 334556666 6777777543
No 103
>PHA02819 hypothetical protein; Provisional
Probab=58.09 E-value=16 Score=25.70 Aligned_cols=14 Identities=14% Similarity=0.460 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHhhc
Q 042996 221 IVIGVIAIIIVKLV 234 (261)
Q Consensus 221 l~i~Ii~vi~~k~~ 234 (261)
+++++.++.|+|.+
T Consensus 57 ~~~~~~~flYLK~~ 70 (71)
T PHA02819 57 VFVIIFIIFYLKVI 70 (71)
T ss_pred HHHHHHHHHHHHhc
Confidence 33444466676654
No 104
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=57.48 E-value=1.1e+02 Score=25.78 Aligned_cols=64 Identities=19% Similarity=0.355 Sum_probs=42.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCC-hHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042996 38 NRQSRQLEELTDKMRECKRLIKEFDREVKDIEGRND-PETNKMLSEKKQSMVKELNSYVALKKQH 101 (261)
Q Consensus 38 ~~r~~~i~~i~~~l~ea~~ll~qme~Ev~~~~~s~~-~~~r~~~~~~~~~~~~~l~~~~~~~k~~ 101 (261)
..+...+..++..+.+++.-+..++.++.......+ ...|..+..++..++.++..++..+..+
T Consensus 65 ~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~~eR~~~l~~l~~l~~~~~~l~~el~~~ 129 (188)
T PF03962_consen 65 QKRQNKLEKLQKEIEELEKKIEELEEKIEEAKKGREESEEREELLEELEELKKELKELKKELEKY 129 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455577777788888888777777777666544443 3357777777777777777766555533
No 105
>PF10032 Pho88: Phosphate transport (Pho88); InterPro: IPR019263 This entry represents proteins involved in inorganic phosphate transport, as well as telomere length regulation and maintenance [, , , ].
Probab=57.38 E-value=14 Score=31.40 Aligned_cols=31 Identities=26% Similarity=0.254 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHhhccCCCCccCCCCCCC
Q 042996 218 LFLIVIGVIAIIIVKLVNPNNKDIRDIPGLA 248 (261)
Q Consensus 218 iill~i~Ii~vi~~k~~~~~~~~~~~~~~~~ 248 (261)
+.++++++.+|++.++.++++...=-++-|+
T Consensus 39 s~~i~~~~y~yi~~~I~~knD~t~lk~~ep~ 69 (192)
T PF10032_consen 39 SQLIILGVYLYIFSKIKKKNDLTTLKYVEPA 69 (192)
T ss_pred HHHHHHHHHHHHHHHHHhcCCceeEEEeCCC
Confidence 3346666668888888877666444444334
No 106
>COG1722 XseB Exonuclease VII small subunit [DNA replication, recombination, and repair]
Probab=56.99 E-value=65 Score=23.40 Aligned_cols=56 Identities=20% Similarity=0.379 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhhchhh-hcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042996 9 DLAEINGQITDIFRALSNGFQKLEK-IKDVNRQSRQLEELTDKMRECKRLIKEFDRE 64 (261)
Q Consensus 9 ~l~~~e~~~~~i~~~i~~~~~~L~~-~~~~~~r~~~i~~i~~~l~ea~~ll~qme~E 64 (261)
.|+.--.++..|+..+++|.-.|+. +..-++-..+.+.|+..|..|+..+...-.+
T Consensus 11 sfE~~l~eLE~IV~~LE~Gel~Le~sl~~~erG~~L~k~c~~~L~~Ae~~v~~l~~~ 67 (81)
T COG1722 11 SFEEALAELEEIVESLESGELPLEEALKEFERGMALYKECQEKLQQAEQRVEKLLEE 67 (81)
T ss_pred hHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4666666888888888888766655 2223444466667777777766665554433
No 107
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=56.58 E-value=13 Score=30.04 Aligned_cols=11 Identities=27% Similarity=0.621 Sum_probs=4.4
Q ss_pred HHHHHHHHHHH
Q 042996 221 IVIGVIAIIIV 231 (261)
Q Consensus 221 l~i~Ii~vi~~ 231 (261)
+++.|++.|||
T Consensus 41 liiiiivli~l 51 (189)
T PF05568_consen 41 LIIIIIVLIYL 51 (189)
T ss_pred HHHHHHHHHHH
Confidence 33334344444
No 108
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=55.96 E-value=85 Score=26.24 Aligned_cols=59 Identities=19% Similarity=0.291 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042996 42 RQLEELTDKMRECKRLIKEFDREVKDIEGRNDPETNKMLSEKKQSMVKELNSYVALKKQHQT 103 (261)
Q Consensus 42 ~~i~~i~~~l~ea~~ll~qme~Ev~~~~~s~~~~~r~~~~~~~~~~~~~l~~~~~~~k~~~~ 103 (261)
.-+..++.++.+....+..||-|++.+.+...- ..+...+..++.+...+...++.+..
T Consensus 86 ~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt~---eemQe~i~~L~kev~~~~erl~~~k~ 144 (201)
T KOG4603|consen 86 GKIVALTEKVQSLQQTCSYVEAEIKELSSALTT---EEMQEEIQELKKEVAGYRERLKNIKA 144 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCh---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667778888888888899998877554432 35666666777777666655554443
No 109
>PTZ00370 STEVOR; Provisional
Probab=55.45 E-value=12 Score=33.65 Aligned_cols=16 Identities=19% Similarity=0.083 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHhhccC
Q 042996 221 IVIGVIAIIIVKLVNP 236 (261)
Q Consensus 221 l~i~Ii~vi~~k~~~~ 236 (261)
.|++||+|||+..-|+
T Consensus 268 ~vvliilYiwlyrrRK 283 (296)
T PTZ00370 268 AVVLIILYIWLYRRRK 283 (296)
T ss_pred HHHHHHHHHHHHHhhc
Confidence 4455555555544333
No 110
>PF11395 DUF2873: Protein of unknown function (DUF2873); InterPro: IPR021532 This entry is represented by the human SARS coronavirus, Orf7b; it is a family of uncharacterised viral proteins.
Probab=54.79 E-value=25 Score=21.61 Aligned_cols=14 Identities=36% Similarity=0.681 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHH
Q 042996 218 LFLIVIGVIAIIIV 231 (261)
Q Consensus 218 iill~i~Ii~vi~~ 231 (261)
.+++++.+|..|++
T Consensus 15 ~~llflv~imliif 28 (43)
T PF11395_consen 15 SFLLFLVIIMLIIF 28 (43)
T ss_pred HHHHHHHHHHHHHH
Confidence 33455555533333
No 111
>PRK06654 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=54.57 E-value=18 Score=30.43 Aligned_cols=22 Identities=27% Similarity=0.406 Sum_probs=8.4
Q ss_pred HHHHHHHH-HHHHHHHHHHHhhc
Q 042996 213 CIMAMLFL-IVIGVIAIIIVKLV 234 (261)
Q Consensus 213 ~i~~~iil-l~i~Ii~vi~~k~~ 234 (261)
|+.++++. ++++++++++.|-+
T Consensus 36 ~~~i~~~a~i~i~~v~~~~~~~~ 58 (181)
T PRK06654 36 WVAIGLFAVIFIVTVVYFVSKMV 58 (181)
T ss_pred HHHHHHHHHHHHhhhhhhhhhhh
Confidence 44444333 33333333333333
No 112
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=54.42 E-value=2.3e+02 Score=28.05 Aligned_cols=27 Identities=19% Similarity=0.479 Sum_probs=14.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042996 37 VNRQSRQLEELTDKMRECKRLIKEFDREVK 66 (261)
Q Consensus 37 ~~~r~~~i~~i~~~l~ea~~ll~qme~Ev~ 66 (261)
.+.....+..+...| +.+-..|+.|+.
T Consensus 273 l~~~~~~~~~i~~~I---d~lYd~le~E~~ 299 (560)
T PF06160_consen 273 LDEVEEENEEIEERI---DQLYDILEKEVE 299 (560)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 344445555555555 445555666653
No 113
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=54.29 E-value=33 Score=24.01 Aligned_cols=24 Identities=21% Similarity=0.341 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccC
Q 042996 213 CIMAMLFLIVIGVIAIIIVKLVNP 236 (261)
Q Consensus 213 ~i~~~iill~i~Ii~vi~~k~~~~ 236 (261)
+++++||+.+++.|++-+|.--+.
T Consensus 5 ~iLi~ICVaii~lIlY~iYnr~~~ 28 (68)
T PF05961_consen 5 FILIIICVAIIGLILYGIYNRKKT 28 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccc
Confidence 567777775555554444444443
No 114
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=54.27 E-value=2.3e+02 Score=28.03 Aligned_cols=57 Identities=16% Similarity=0.392 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhchhhhc---chhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042996 8 DDLAEINGQITDIFRALSNGFQKLEKIK---DVNRQSRQLEELTDKMRECKRLIKEFDRE 64 (261)
Q Consensus 8 ~~l~~~e~~~~~i~~~i~~~~~~L~~~~---~~~~r~~~i~~i~~~l~ea~~ll~qme~E 64 (261)
..+..+...|-..+.+|..|...+..-. +...-...+..++..+.++...|++++++
T Consensus 215 ~l~~~l~~~~P~ql~eL~~gy~~m~~~gy~l~~~~i~~~i~~i~~~l~~~~~~L~~l~l~ 274 (560)
T PF06160_consen 215 KLYKELQKEFPDQLEELKEGYREMEEEGYYLEHLDIEEEIEQIEEQLEEALALLKNLELD 274 (560)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCHH
Confidence 5677788888888999999988865421 11223455667777776666666666544
No 115
>PF09125 COX2-transmemb: Cytochrome C oxidase subunit II, transmembrane; InterPro: IPR015209 This N-terminal domain forms the transmembrane region in subunit II of cytochrome c oxidase from Thermus thermophilus. This domain adopts a tertiary structure consisting of two antiparallel transmembrane helices, in a transmembrane helix hairpin fold []. ; PDB: 1EHK_B 2QPE_B 3S8F_B 4EV3_B 3BVD_B 3S8G_B 3EH3_B 3S3C_B 3S39_B 3QJQ_B ....
Probab=54.26 E-value=49 Score=20.28 Aligned_cols=14 Identities=21% Similarity=0.228 Sum_probs=7.2
Q ss_pred hHHHHHHHHHHHHH
Q 042996 212 KCIMAMLFLIVIGV 225 (261)
Q Consensus 212 K~i~~~iill~i~I 225 (261)
+||++.++.+++.|
T Consensus 15 ~Wi~F~l~mi~vFi 28 (38)
T PF09125_consen 15 GWIAFALAMILVFI 28 (38)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH
Confidence 47766655433333
No 116
>PRK14068 exodeoxyribonuclease VII small subunit; Provisional
Probab=54.08 E-value=78 Score=22.65 Aligned_cols=53 Identities=13% Similarity=0.227 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhchhhh-cchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 042996 10 LAEINGQITDIFRALSNGFQKLEKI-KDVNRQSRQLEELTDKMRECKRLIKEFD 62 (261)
Q Consensus 10 l~~~e~~~~~i~~~i~~~~~~L~~~-~~~~~r~~~i~~i~~~l~ea~~ll~qme 62 (261)
|+..=.++..|+..|+++--.|+.. ..-.+-...++.|+..|..|+.-+..+-
T Consensus 8 fEeal~~Le~IV~~LE~gdl~Leesl~lyeeG~~L~k~C~~~L~~ae~kv~~l~ 61 (76)
T PRK14068 8 FEEMMQELEQIVQKLDNETVSLEESLDLYQRGMKLSAACDTTLKNAEKKVNDLI 61 (76)
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555557777888888876665542 2234455677777777777766655543
No 117
>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function. It appears to be confined to proteins from Mycoplasma pneumoniae [].; PDB: 2BA2_C.
Probab=53.02 E-value=91 Score=23.69 Aligned_cols=38 Identities=13% Similarity=0.196 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042996 171 AVLKAQTEQMSRIVNELDSIHFSIKKASQLVKEIGRQV 208 (261)
Q Consensus 171 ~~L~~Qre~l~~~~~~l~~i~~~L~~s~~~l~~m~rr~ 208 (261)
+....|.|+|.....+.......|..-...|..|..|.
T Consensus 60 e~V~~QGEqIkel~~e~k~qgktL~~I~~~L~~inkRL 97 (102)
T PF01519_consen 60 EKVDKQGEQIKELQVEQKAQGKTLQLILKTLQSINKRL 97 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556777777777777777777777777777777764
No 118
>COG4317 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=52.87 E-value=22 Score=25.87 Aligned_cols=9 Identities=44% Similarity=0.844 Sum_probs=6.5
Q ss_pred CCCCCCchh
Q 042996 244 IPGLAPPAM 252 (261)
Q Consensus 244 ~~~~~~~~~ 252 (261)
+|+||||+-
T Consensus 23 vrsPAPP~i 31 (93)
T COG4317 23 VRSPAPPAI 31 (93)
T ss_pred CCCCCCcHH
Confidence 467799974
No 119
>KOG2150 consensus CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]
Probab=52.81 E-value=2.5e+02 Score=27.94 Aligned_cols=28 Identities=14% Similarity=0.316 Sum_probs=13.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042996 37 VNRQSRQLEELTDKMRECKRLIKEFDRE 64 (261)
Q Consensus 37 ~~~r~~~i~~i~~~l~ea~~ll~qme~E 64 (261)
.++|-....+++..|.-+.++-.|....
T Consensus 37 ~sqkeK~e~DLKkEIKKLQRlRdQIKtW 64 (575)
T KOG2150|consen 37 VSQKEKLESDLKKEIKKLQRLRDQIKTW 64 (575)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3445555555555555555554444444
No 120
>PF06363 Picorna_P3A: Picornaviridae P3A protein; InterPro: IPR009419 The viral polyprotein of parechoviruses contains: coat protein VP0 (P1AB); coat protein VP3 (P1C); coat protein VP1 (P1D); picornain 2A (3.4.22.29 from EC, core protein P2A); core protein P2B; core protein P2C; core protein P3A; genome-linked protein VPg (P3B); picornain 3C (3.4.22.28 from EC, MEROPS peptidase subfamily 3CF: parechovirus picornain 3C (P3C))[]. This entry consists of the parechovirus P3A protein. P3A has been identified as a genome-linked protein (VPg), which is involved in replication [].; GO: 0019012 virion
Probab=52.63 E-value=73 Score=23.71 Aligned_cols=39 Identities=13% Similarity=0.229 Sum_probs=22.0
Q ss_pred HHHHHHHHHHhhhhh-HHHHHHHH-HHHHHHHHHHHhhccCC
Q 042996 198 SQLVKEIGRQVATDK-CIMAMLFL-IVIGVIAIIIVKLVNPN 237 (261)
Q Consensus 198 ~~~l~~m~rr~~~dK-~i~~~iil-l~i~Ii~vi~~k~~~~~ 237 (261)
...|+.|..=+..|| |+.++-++ -++.|++ ++++++++-
T Consensus 55 ~~k~k~~~~FV~RNk~W~T~~S~~tS~isIL~-LV~~~~KKe 95 (100)
T PF06363_consen 55 KNKMKSMLSFVERNKAWFTVVSAVTSFISILL-LVTKIFKKE 95 (100)
T ss_pred HHHHHHHHHHHHHcchHhhHHHHHHHHHHHHH-HHHHHHhhh
Confidence 445666666677778 55555444 4555544 444555553
No 121
>PF15018 InaF-motif: TRP-interacting helix
Probab=52.49 E-value=23 Score=21.96 Aligned_cols=23 Identities=4% Similarity=0.082 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcc
Q 042996 213 CIMAMLFLIVIGVIAIIIVKLVN 235 (261)
Q Consensus 213 ~i~~~iill~i~Ii~vi~~k~~~ 235 (261)
++.|++.+-+.||++.+||-|+=
T Consensus 10 V~~Yl~~VSl~Ai~LsiYY~f~W 32 (38)
T PF15018_consen 10 VVAYLFSVSLAAIVLSIYYIFFW 32 (38)
T ss_pred HHHHHHHHHHHHHHHHHHHheee
Confidence 34555555677888888887765
No 122
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=52.13 E-value=1.6e+02 Score=25.66 Aligned_cols=25 Identities=16% Similarity=0.214 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 042996 77 NKMLSEKKQSMVKELNSYVALKKQH 101 (261)
Q Consensus 77 r~~~~~~~~~~~~~l~~~~~~~k~~ 101 (261)
|..+...+++...|++.+....+..
T Consensus 48 r~~h~eeLrqI~~DIn~lE~iIkqa 72 (230)
T PF10146_consen 48 RMAHVEELRQINQDINTLENIIKQA 72 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555566666666555544433
No 123
>PRK14762 membrane protein; Provisional
Probab=51.81 E-value=20 Score=20.04 Aligned_cols=9 Identities=22% Similarity=0.416 Sum_probs=5.2
Q ss_pred hHHHHHHHH
Q 042996 212 KCIMAMLFL 220 (261)
Q Consensus 212 K~i~~~iil 220 (261)
|+++|++.+
T Consensus 2 ki~lw~i~i 10 (27)
T PRK14762 2 KIILWAVLI 10 (27)
T ss_pred eeHHHHHHH
Confidence 456666544
No 124
>PF14283 DUF4366: Domain of unknown function (DUF4366)
Probab=51.61 E-value=3.8 Score=35.49 Aligned_cols=19 Identities=26% Similarity=0.342 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHhhccCCCC
Q 042996 221 IVIGVIAIIIVKLVNPNNK 239 (261)
Q Consensus 221 l~i~Ii~vi~~k~~~~~~~ 239 (261)
++++..++.|+||.|++..
T Consensus 170 ~l~gGGa~yYfK~~K~K~~ 188 (218)
T PF14283_consen 170 ALIGGGAYYYFKFYKPKQE 188 (218)
T ss_pred HHhhcceEEEEEEeccccc
Confidence 4455557788888887644
No 125
>PTZ00208 65 kDa invariant surface glycoprotein; Provisional
Probab=51.29 E-value=19 Score=33.96 Aligned_cols=34 Identities=15% Similarity=0.382 Sum_probs=21.6
Q ss_pred HHHHhhhhhHHHHHHHH--HHHHHHHHHHHhhccCC
Q 042996 204 IGRQVATDKCIMAMLFL--IVIGVIAIIIVKLVNPN 237 (261)
Q Consensus 204 m~rr~~~dK~i~~~iil--l~i~Ii~vi~~k~~~~~ 237 (261)
+.+|....++|+..+++ ++++|+.++|+-|++++
T Consensus 378 ~~~~~~~~~~i~~avl~p~~il~~~~~~~~~~v~rr 413 (436)
T PTZ00208 378 VSSRHQRTAMIILAVLVPAIILAIIAVAFFIMVKRR 413 (436)
T ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHhheeeeec
Confidence 55666666777766554 56666666666666654
No 126
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=50.56 E-value=1.2e+02 Score=23.87 Aligned_cols=50 Identities=18% Similarity=0.355 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042996 42 RQLEELTDKMRECKRLIKEFDREVKDIEGRNDPETNKMLSEKKQSMVKELNSYVALKKQHQT 103 (261)
Q Consensus 42 ~~i~~i~~~l~ea~~ll~qme~Ev~~~~~s~~~~~r~~~~~~~~~~~~~l~~~~~~~k~~~~ 103 (261)
..|..+..++++..++.+++..||.. +...+.+...+++.++.....+..
T Consensus 68 qRId~vd~klDe~~ei~~~i~~eV~~------------v~~dv~~i~~dv~~v~~~V~~Le~ 117 (126)
T PF07889_consen 68 QRIDRVDDKLDEQKEISKQIKDEVTE------------VREDVSQIGDDVDSVQQMVEGLEG 117 (126)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHH------------HHhhHHHHHHHHHHHHHHHHHHHH
Confidence 45777888999999999999988853 334455555566655555444433
No 127
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=49.71 E-value=2.1e+02 Score=26.30 Aligned_cols=62 Identities=11% Similarity=0.135 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042996 42 RQLEELTDKMRECKRLIKEFDREVKDIEGRNDPETNKMLSEKKQSMVKELNSYVALKKQHQT 103 (261)
Q Consensus 42 ~~i~~i~~~l~ea~~ll~qme~Ev~~~~~s~~~~~r~~~~~~~~~~~~~l~~~~~~~k~~~~ 103 (261)
..+.++++.+.-+..-+..+......++....+..|..+-..+...+.....++.+++++.+
T Consensus 93 qkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q~~qLe~d~qs~lD 154 (319)
T PF09789_consen 93 QKLNEAQGDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLEKLREQIEQLERDLQSLLD 154 (319)
T ss_pred HHHHHHhchHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445544455555555555544444444456677766777667777777766666554
No 128
>TIGR01294 P_lamban phospholamban. This model represents the short (52 residue) transmembrane phosphoprotein phospholamban. Phospholamban, in its unphosphorylated form, inhibits SERCA2, the cardiac sarcoplasmic reticulum Ca-ATPase.
Probab=49.63 E-value=67 Score=20.63 Aligned_cols=27 Identities=22% Similarity=0.235 Sum_probs=12.1
Q ss_pred HHHHHHHHHH-HHHHHHHhhhhhHHHHH
Q 042996 191 HFSIKKASQL-VKEIGRQVATDKCIMAM 217 (261)
Q Consensus 191 ~~~L~~s~~~-l~~m~rr~~~dK~i~~~ 217 (261)
.+.+.+|..+ +.--+|+-.++-++-+.
T Consensus 9 rsairras~ie~~~qar~~lq~lfvnf~ 36 (52)
T TIGR01294 9 RSAIRRASTIEMPQQARQNLQNLFINFC 36 (52)
T ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence 3444444432 33345555555444333
No 129
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=49.52 E-value=2.2e+02 Score=26.53 Aligned_cols=38 Identities=16% Similarity=0.204 Sum_probs=15.2
Q ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 042996 144 MMDETDQAIERSKQVVHETINVGTETAAVLKAQTEQMS 181 (261)
Q Consensus 144 ~l~~~~~~L~~s~~~~~ete~ig~~il~~L~~Qre~l~ 181 (261)
.+.......+.+...+.+-...=..|.++|......|+
T Consensus 281 ~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~eme 318 (359)
T PF10498_consen 281 ELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEME 318 (359)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444333333334444443333333
No 130
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=49.52 E-value=25 Score=25.93 Aligned_cols=19 Identities=16% Similarity=0.127 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHhhccC
Q 042996 218 LFLIVIGVIAIIIVKLVNP 236 (261)
Q Consensus 218 iill~i~Ii~vi~~k~~~~ 236 (261)
++.++++|+++++||.-+.
T Consensus 10 ~~~v~~~i~~y~~~k~~ka 28 (87)
T PF10883_consen 10 VGAVVALILAYLWWKVKKA 28 (87)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3347777778888887553
No 131
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=48.95 E-value=2.1e+02 Score=26.07 Aligned_cols=26 Identities=19% Similarity=0.348 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042996 42 RQLEELTDKMRECKRLIKEFDREVKD 67 (261)
Q Consensus 42 ~~i~~i~~~l~ea~~ll~qme~Ev~~ 67 (261)
-.++++...|++.++.++++|.++..
T Consensus 75 ~~c~EL~~~I~egr~~~~~~E~~~~~ 100 (325)
T PF08317_consen 75 FSCRELKKYISEGRQIFEEIEEETYE 100 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 56888999999999999999999864
No 132
>PRK14064 exodeoxyribonuclease VII small subunit; Provisional
Probab=48.89 E-value=96 Score=22.10 Aligned_cols=52 Identities=19% Similarity=0.266 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhchhhh-cchhHHHHHHHHHHHHHHHHHHHHHHH
Q 042996 10 LAEINGQITDIFRALSNGFQKLEKI-KDVNRQSRQLEELTDKMRECKRLIKEF 61 (261)
Q Consensus 10 l~~~e~~~~~i~~~i~~~~~~L~~~-~~~~~r~~~i~~i~~~l~ea~~ll~qm 61 (261)
|+.-=.++..|+..++++--.|+.. ..-.+-...++.|+..|.+|+.-+..+
T Consensus 8 fEe~l~~LE~IV~~LE~~~l~Leesl~~ye~G~~L~k~c~~~L~~ae~kv~~l 60 (75)
T PRK14064 8 FEEAIAELETIVEALENGSASLEDSLDMYQKGIELTKLCQDKLQSAEKRMAKV 60 (75)
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555556777787778776665542 223445567777777777777665544
No 133
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=48.64 E-value=36 Score=26.69 Aligned_cols=35 Identities=14% Similarity=0.106 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCccCCCCCCCCc
Q 042996 216 AMLFLIVIGVIAIIIVKLVNPNNKDIRDIPGLAPP 250 (261)
Q Consensus 216 ~~iill~i~Ii~vi~~k~~~~~~~~~~~~~~~~~~ 250 (261)
+++|+|+|+.++.+-.+..++.-.-+.++-..+||
T Consensus 9 i~~i~l~~~~~~~~~rRR~r~G~~P~~gt~w~~pp 43 (130)
T PF12273_consen 9 IVAILLFLFLFYCHNRRRRRRGLQPIYGTRWMAPP 43 (130)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCcCCceecCCC
Confidence 33333444444555566666665655555555544
No 134
>PF13955 Fst_toxin: Toxin Fst, type I toxin-antitoxin system; PDB: 2KV5_A.
Probab=48.61 E-value=40 Score=18.07 Aligned_cols=16 Identities=25% Similarity=0.526 Sum_probs=10.9
Q ss_pred HHH-HHHHHHHHHHHhh
Q 042996 218 LFL-IVIGVIAIIIVKL 233 (261)
Q Consensus 218 iil-l~i~Ii~vi~~k~ 233 (261)
+|. +++++++.++-++
T Consensus 4 iIaPi~VGvvl~l~~~w 20 (21)
T PF13955_consen 4 IIAPIVVGVVLTLFDHW 20 (21)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred ehhhHHHHHHHHHHHhh
Confidence 444 7788887777665
No 135
>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=48.61 E-value=1.9e+02 Score=25.47 Aligned_cols=38 Identities=16% Similarity=0.143 Sum_probs=22.0
Q ss_pred hhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 042996 143 RMMDETDQAIERSKQVVHETINVGTETAAVLKAQTEQM 180 (261)
Q Consensus 143 ~~l~~~~~~L~~s~~~~~ete~ig~~il~~L~~Qre~l 180 (261)
..+.+-++-++....++.+-.++-.-|-.++..=++.+
T Consensus 192 kt~ael~qLfndm~~~V~eq~e~Vd~I~~~~~~~~~n~ 229 (280)
T COG5074 192 KTMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQENV 229 (280)
T ss_pred HHHHHHHHHHHHHHHHHHhhcchHHHHHhhHhhHHhhH
Confidence 34445556666666666666666666665555444433
No 136
>KOG4684 consensus Uncharacterized conserved protein, contains C4-type Zn-finger [General function prediction only]
Probab=48.58 E-value=25 Score=30.37 Aligned_cols=30 Identities=17% Similarity=0.473 Sum_probs=20.9
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 042996 199 QLVKEIGRQVATDKCIMAMLFLIVIGVIAI 228 (261)
Q Consensus 199 ~~l~~m~rr~~~dK~i~~~iill~i~Ii~v 228 (261)
+-+..+.+|-...|+++++|+.++++|..+
T Consensus 196 rKvSsvGsrfar~Ra~~ffilal~~avta~ 225 (275)
T KOG4684|consen 196 RKVSSVGSRFARRRALLFFILALTVAVTAV 225 (275)
T ss_pred cchhhhhhHHhhhhhHHHHHHHHHHHHHHH
Confidence 445667788888888888887655555433
No 137
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=48.48 E-value=1.4e+02 Score=30.37 Aligned_cols=25 Identities=16% Similarity=0.041 Sum_probs=15.5
Q ss_pred HHHHHhhccCCCCccCCCCCCCCch
Q 042996 227 AIIIVKLVNPNNKDIRDIPGLAPPA 251 (261)
Q Consensus 227 ~vi~~k~~~~~~~~~~~~~~~~~~~ 251 (261)
.++.||+-..+++.|.=.++-+|-.
T Consensus 642 ~llGyki~~~~~~~~rl~S~ya~~~ 666 (722)
T PF05557_consen 642 SLLGYKIDFMPNGRVRLTSMYAESP 666 (722)
T ss_dssp HHHSEEEEEETTTEEEEEETT-SST
T ss_pred HHhcceeeecCCCeEEEEecccCCC
Confidence 4567777666677776666665543
No 138
>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=48.29 E-value=2.1e+02 Score=25.78 Aligned_cols=66 Identities=8% Similarity=0.088 Sum_probs=40.0
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 042996 145 MDETDQAIERSKQVVHETINVGTETAAVLKAQTEQMSRIVNELDSIHFSIKKASQLVKEIGRQVAT 210 (261)
Q Consensus 145 l~~~~~~L~~s~~~~~ete~ig~~il~~L~~Qre~l~~~~~~l~~i~~~L~~s~~~l~~m~rr~~~ 210 (261)
..+-...+.....+-.+...+-.+=..-..+=-..|.++++++...+..|.+|...=+.-.|..+.
T Consensus 197 I~~l~~gI~Eln~IF~dL~~lV~eQG~lVdrID~Ni~~t~~n~k~A~kEL~kA~~hqrrt~k~~~~ 262 (283)
T COG5325 197 IKNLARGIYELNEIFRDLGSLVGEQGELVDRIDFNIENTSDNLKNANKELEKAPAHQRRTKKCRFY 262 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhhhhhhhHHHHhhHHHHHHhHHHHhhhccchhh
Confidence 333344444444444444333333233334445678899999999999999999888776665544
No 139
>PRK14067 exodeoxyribonuclease VII small subunit; Provisional
Probab=48.29 E-value=1e+02 Score=22.27 Aligned_cols=53 Identities=17% Similarity=0.224 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhchhhh-cchhHHHHHHHHHHHHHHHHHHHHHHH
Q 042996 9 DLAEINGQITDIFRALSNGFQKLEKI-KDVNRQSRQLEELTDKMRECKRLIKEF 61 (261)
Q Consensus 9 ~l~~~e~~~~~i~~~i~~~~~~L~~~-~~~~~r~~~i~~i~~~l~ea~~ll~qm 61 (261)
.|+..=.++..|+..++++--.|+.. ..-.+-...++.|+..|..|+.-|..+
T Consensus 8 sfEeal~~LEeIV~~LE~~~l~Lees~~lyeeG~~L~k~C~~~L~~ae~kI~~l 61 (80)
T PRK14067 8 DFEQQLARLQEIVDALEGGDLPLEESVALYKEGLGLARACREQLAKARNEIRLF 61 (80)
T ss_pred CHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555556677777777776555541 223445566777777776666665544
No 140
>PHA03097 C-type lectin-like protein; Provisional
Probab=47.90 E-value=39 Score=27.52 Aligned_cols=37 Identities=19% Similarity=0.183 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCCccCCCCCCCC
Q 042996 213 CIMAMLFLIVIGVIAIIIVKLVNPNNKDIRDIPGLAP 249 (261)
Q Consensus 213 ~i~~~iill~i~Ii~vi~~k~~~~~~~~~~~~~~~~~ 249 (261)
+|.+.++..+++.|+.++.-..++...++.+++||..
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~CP~g 49 (157)
T PHA03097 13 WILVPCGSIIIALIALVIILSCKLSPGDRSGLNCRSG 49 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCCCcCCCCCCC
Confidence 4444444433333332222234555567777888753
No 141
>PF11337 DUF3139: Protein of unknown function (DUF3139); InterPro: IPR021486 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=47.85 E-value=26 Score=25.36 Aligned_cols=9 Identities=33% Similarity=0.682 Sum_probs=3.8
Q ss_pred hHHHHHHHH
Q 042996 212 KCIMAMLFL 220 (261)
Q Consensus 212 K~i~~~iil 220 (261)
|+++.++++
T Consensus 5 kii~iii~l 13 (85)
T PF11337_consen 5 KIILIIIIL 13 (85)
T ss_pred HHHHHHHHH
Confidence 344444433
No 142
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=47.78 E-value=21 Score=29.56 Aligned_cols=21 Identities=10% Similarity=0.075 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHhhccC
Q 042996 216 AMLFLIVIGVIAIIIVKLVNP 236 (261)
Q Consensus 216 ~~iill~i~Ii~vi~~k~~~~ 236 (261)
|+++++..++|+|+++++++.
T Consensus 99 ~Vl~g~s~l~i~yfvir~~R~ 119 (163)
T PF06679_consen 99 YVLVGLSALAILYFVIRTFRL 119 (163)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 444445566666666666653
No 143
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=47.75 E-value=16 Score=33.16 Aligned_cols=7 Identities=14% Similarity=0.287 Sum_probs=2.7
Q ss_pred HHHHHHH
Q 042996 9 DLAEING 15 (261)
Q Consensus 9 ~l~~~e~ 15 (261)
.|++|++
T Consensus 51 RF~EYdE 57 (299)
T PF02009_consen 51 RFEEYDE 57 (299)
T ss_pred HHHHHHh
Confidence 3333433
No 144
>PF06143 Baculo_11_kDa: Baculovirus 11 kDa family; InterPro: IPR009313 This is a family of uncharacterised Baculovirus proteins that are all about 11 kDa in size.
Probab=47.62 E-value=65 Score=23.59 Aligned_cols=17 Identities=6% Similarity=0.403 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 042996 188 DSIHFSIKKASQLVKEI 204 (261)
Q Consensus 188 ~~i~~~L~~s~~~l~~m 204 (261)
|..+.-+++-+..|+.+
T Consensus 20 DQL~qlVsrN~sfirdF 36 (84)
T PF06143_consen 20 DQLEQLVSRNRSFIRDF 36 (84)
T ss_pred HHHHHHHHhChHHHHHH
Confidence 33333444445555554
No 145
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=47.15 E-value=2.2e+02 Score=27.24 Aligned_cols=66 Identities=11% Similarity=0.216 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042996 143 RMMDETDQAIERSKQVVHETINVGTETAAVLKAQTEQMSRIVNELDSIHFSIKKASQLVKEIGRQV 208 (261)
Q Consensus 143 ~~l~~~~~~L~~s~~~~~ete~ig~~il~~L~~Qre~l~~~~~~l~~i~~~L~~s~~~l~~m~rr~ 208 (261)
+.+++....|..-++.+.+..+.-...-.+|.++...|..+...+..+..++...++-|..+..+.
T Consensus 38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l 103 (420)
T COG4942 38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARL 103 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHH
No 146
>PF12606 RELT: Tumour necrosis factor receptor superfamily member 19; InterPro: IPR022248 The members of tumor necrosis factor receptor (TNFR) superfamily have been designated as the "guardians of the immune system" due to their roles in immune cell proliferation, differentiation, activation, and death (apoptosis). RELT (receptor expressed in lymphoid tissues) is a member of the TNFR superfamily. The messenger RNA of RELT is especially abundant in hematologic tissues such as spleen, lymph node, and peripheral blood leukocytes as well as in leukemias and lymphomas. RELT is able to activate the NF-kappaB pathway and selectively binds tumor necrosis factor receptor-associated factor 1 []. RELT like proteins 1 and 2 (RELL1 and RELL2) are two RELT homologues that bind to RELT. The expression of RELL1 at the mRNA level is ubiquitous, whereas expression of RELL2 mRNA is more restricted to particular tissues [].
Probab=47.13 E-value=24 Score=23.27 Aligned_cols=17 Identities=24% Similarity=0.528 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHhhccCC
Q 042996 221 IVIGVIAIIIVKLVNPN 237 (261)
Q Consensus 221 l~i~Ii~vi~~k~~~~~ 237 (261)
++++++++.++-..|..
T Consensus 11 iv~~lLg~~I~~~~K~y 27 (50)
T PF12606_consen 11 IVMGLLGLSICTTLKAY 27 (50)
T ss_pred HHHHHHHHHHHHHhhcc
Confidence 45555566666666554
No 147
>PHA02975 hypothetical protein; Provisional
Probab=46.84 E-value=31 Score=24.20 Aligned_cols=13 Identities=31% Similarity=0.539 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHhh
Q 042996 221 IVIGVIAIIIVKL 233 (261)
Q Consensus 221 l~i~Ii~vi~~k~ 233 (261)
+++++..+.|+|.
T Consensus 55 ~~~~~~~flYLK~ 67 (69)
T PHA02975 55 TCIAVFTFLYLKL 67 (69)
T ss_pred HHHHHHHHHHHHh
Confidence 3344446666665
No 148
>KOG3287 consensus Membrane trafficking protein, emp24/gp25L/p24 family [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.61 E-value=1.5e+02 Score=25.83 Aligned_cols=33 Identities=18% Similarity=0.247 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 042996 179 QMSRIVNELDSIHFSIKKASQLVKEIGRQVATD 211 (261)
Q Consensus 179 ~l~~~~~~l~~i~~~L~~s~~~l~~m~rr~~~d 211 (261)
+|+.+.+.+..+..+|.++...-.-..-|.+.|
T Consensus 154 kl~di~~~i~~i~~nl~k~~~~q~~lRa~EaRD 186 (236)
T KOG3287|consen 154 KLDDIEDSIGTIKNNLNKMWQYQALLRAREARD 186 (236)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 345555555555566666555444433333333
No 149
>PF15106 TMEM156: TMEM156 protein family
Probab=46.26 E-value=23 Score=30.42 Aligned_cols=25 Identities=32% Similarity=0.425 Sum_probs=14.1
Q ss_pred hHHHHHHHH-HHHHHHHHHHHhhccC
Q 042996 212 KCIMAMLFL-IVIGVIAIIIVKLVNP 236 (261)
Q Consensus 212 K~i~~~iil-l~i~Ii~vi~~k~~~~ 236 (261)
|+.-|+.++ +++..|++|++|++.-
T Consensus 175 KITWYvLVllVfiflii~iI~KIle~ 200 (226)
T PF15106_consen 175 KITWYVLVLLVFIFLIILIIYKILEG 200 (226)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444333 4455556777888764
No 150
>PF11119 DUF2633: Protein of unknown function (DUF2633); InterPro: IPR022576 This family is conserved largely in Proteobacteria. Several members are named as YfgG. The function is not known.
Probab=45.76 E-value=22 Score=24.26 Aligned_cols=28 Identities=25% Similarity=0.478 Sum_probs=18.9
Q ss_pred hHHHHHHHHHHHH-HHHHHHHhhccCCCC
Q 042996 212 KCIMAMLFLIVIG-VIAIIIVKLVNPNNK 239 (261)
Q Consensus 212 K~i~~~iill~i~-Ii~vi~~k~~~~~~~ 239 (261)
|+++.+-++++++ ++++.+--|.++.++
T Consensus 11 riVLLISfiIlfgRl~Y~~I~a~~hHq~k 39 (59)
T PF11119_consen 11 RIVLLISFIILFGRLIYSAIGAWVHHQDK 39 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 5777776666777 666667677766555
No 151
>PF12575 DUF3753: Protein of unknown function (DUF3753); InterPro: IPR009175 This group represents an uncharacterised conserved protein belonging to poxvirus family I2.
Probab=45.74 E-value=27 Score=24.77 Aligned_cols=6 Identities=17% Similarity=0.484 Sum_probs=2.8
Q ss_pred HHHHHh
Q 042996 227 AIIIVK 232 (261)
Q Consensus 227 ~vi~~k 232 (261)
+++|+|
T Consensus 65 ~flYLK 70 (72)
T PF12575_consen 65 TFLYLK 70 (72)
T ss_pred HHHHhc
Confidence 344544
No 152
>PHA03164 hypothetical protein; Provisional
Probab=45.60 E-value=31 Score=24.77 Aligned_cols=11 Identities=18% Similarity=0.504 Sum_probs=5.3
Q ss_pred HHHHHHHHHHH
Q 042996 221 IVIGVIAIIIV 231 (261)
Q Consensus 221 l~i~Ii~vi~~ 231 (261)
+++.|++++|.
T Consensus 70 mILfiifvlyv 80 (88)
T PHA03164 70 MILFIIFVLYV 80 (88)
T ss_pred HHHHHHHHHHh
Confidence 44444455544
No 153
>TIGR01280 xseB exodeoxyribonuclease VII, small subunit. This protein is the small subunit for exodeoxyribonuclease VII. Exodeoxyribonuclease VII is made of a complex of four small subunits to one large subunit. The complex degrades single-stranded DNA into large acid-insoluble oligonucleotides. These nucleotides are then degraded further into acid-soluble oligonucleotides.
Probab=45.39 E-value=1e+02 Score=21.39 Aligned_cols=53 Identities=15% Similarity=0.224 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhchhhh-cchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 042996 10 LAEINGQITDIFRALSNGFQKLEKI-KDVNRQSRQLEELTDKMRECKRLIKEFD 62 (261)
Q Consensus 10 l~~~e~~~~~i~~~i~~~~~~L~~~-~~~~~r~~~i~~i~~~l~ea~~ll~qme 62 (261)
|+..=.++..|+..++++--.|+.. ..-.+-...++.|+..|..|+.-+..+.
T Consensus 3 fEe~l~~Le~Iv~~LE~~~l~Leesl~lyeeG~~L~k~c~~~L~~ae~kv~~l~ 56 (67)
T TIGR01280 3 FEEALSELEQIVQKLESGDLALEEALNLFERGMALARRCEKKLAQAEQRVRKLL 56 (67)
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444456667777777776555542 1234455666777777776666655544
No 154
>PF04272 Phospholamban: Phospholamban; InterPro: IPR005984 Phospholamban (PLB) is a small protein (52 amino acids) that regulates the affinity of the cardiac sarcoplasmic reticulum Ca2+-ATPase (SERCA2a) for calcium. PLB is present in cardiac myocytes, in slow-twitch and smooth muscle and is expressed also in aorta endothelial cells in which it could play a role in tissue relaxation. The phosphorylation/dephosphorylation of phospholamban removes and restores, respectively, its inhibitory activity on SERCA2a. It has in fact been shown that phospholamban, in its non-phosphorylated form, binds to SERCA2a and inhibits this pump by lowering its affinity for Ca2+, whereas the phosphorylated form does not exert the inhibition. PLB is phosphorylated at two sites, namely at Ser-16 for a cAMP-dependent phosphokinase and at Thr-17 for a Ca2+/calmodulin-dependent phosphokinase, phosphorylation at Ser-16 being a prerequisite for the phosphorylation at Thr-17. The structure of a 36-amino-acid-long N-terminal fragment of human phospholamban phosphorylated at Ser-16 and Thr-17 and Cys36Ser mutated was determined from nuclear magnetic resonance data. The peptide assumes a conformation characterised by two alpha-helices connected by an irregular strand, which comprises the amino acids from Arg-13 to Pro-21. The proline is in a trans conformation. The two phosphate groups on Ser-16 and Thr-17 are shown to interact preferably with the side chains of Arg-14 and Arg-13, respectively [].; GO: 0005246 calcium channel regulator activity, 0042030 ATPase inhibitor activity, 0006816 calcium ion transport, 0016020 membrane; PDB: 1N7L_A 1FJP_A 1FJK_A 2HYN_C 1ZLL_D 1PLP_A 3O7L_I.
Probab=45.31 E-value=60 Score=20.85 Aligned_cols=10 Identities=20% Similarity=0.248 Sum_probs=4.6
Q ss_pred HHHhhhhhHH
Q 042996 205 GRQVATDKCI 214 (261)
Q Consensus 205 ~rr~~~dK~i 214 (261)
+|+-.++-++
T Consensus 24 a~qnlqelfv 33 (52)
T PF04272_consen 24 ARQNLQELFV 33 (52)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4444454444
No 155
>PRK14750 kdpF potassium-transporting ATPase subunit F; Provisional
Probab=45.19 E-value=43 Score=19.31 Aligned_cols=16 Identities=19% Similarity=0.451 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHhhccC
Q 042996 221 IVIGVIAIIIVKLVNP 236 (261)
Q Consensus 221 l~i~Ii~vi~~k~~~~ 236 (261)
++++.+.+++|..+..
T Consensus 11 lv~lLl~YLvYAL~na 26 (29)
T PRK14750 11 LVLLLLGYLVYALFNA 26 (29)
T ss_pred HHHHHHHHHHHHHcCc
Confidence 4555556777777653
No 156
>PF06696 Strep_SA_rep: Streptococcal surface antigen repeat; InterPro: IPR009578 This family consists of a number of ~25 residue long repeats found commonly in Streptococcal surface antigens although one copy is present in the HPSR2-heavy chain potential motor protein of Giardia lamblia (Giardia intestinalis) (Q24984 from SWISSPROT). This family is often found in conjunction with IPR001899 from INTERPRO.; PDB: 3IOX_A 3IPK_A 2WD6_B 1JMM_A.
Probab=45.15 E-value=56 Score=18.31 Aligned_cols=19 Identities=16% Similarity=-0.013 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 042996 79 MLSEKKQSMVKELNSYVAL 97 (261)
Q Consensus 79 ~~~~~~~~~~~~l~~~~~~ 97 (261)
.|+.++..|+++|..++..
T Consensus 2 ~Yqakla~YqaeLa~vqk~ 20 (25)
T PF06696_consen 2 DYQAKLAQYQAELARVQKA 20 (25)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHH
Confidence 4667777888888776644
No 157
>PF08649 DASH_Dad1: DASH complex subunit Dad1; InterPro: IPR013958 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules []. Throughout the cell cycle Dad1 remains bound to kinetochores and its association is dependent on the Mis6 and Mal2 [].
Probab=44.69 E-value=73 Score=21.65 Aligned_cols=36 Identities=17% Similarity=0.303 Sum_probs=28.5
Q ss_pred hHHHHHHhhhhhhHHHHHHHHHHHHhHHHHHHHHHH
Q 042996 133 TNQQLMDSGNRMMDETDQAIERSKQVVHETINVGTE 168 (261)
Q Consensus 133 ~~~~ll~~~~~~l~~~~~~L~~s~~~~~ete~ig~~ 168 (261)
+|..+++.-...+++....|+..+|.+.++..+|.+
T Consensus 6 qR~~Li~eI~~~~e~vl~nlN~LNRsLE~~i~VGkE 41 (58)
T PF08649_consen 6 QRDRLIQEISESMESVLNNLNALNRSLESVISVGKE 41 (58)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhh
Confidence 566677667777888888888888888888888876
No 158
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=44.49 E-value=4.6e+02 Score=28.75 Aligned_cols=37 Identities=11% Similarity=0.194 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042996 172 VLKAQTEQMSRIVNELDSIHFSIKKASQLVKEIGRQV 208 (261)
Q Consensus 172 ~L~~Qre~l~~~~~~l~~i~~~L~~s~~~l~~m~rr~ 208 (261)
++..-++.|..++..+......+.-+...+..+.+++
T Consensus 1592 ~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~ 1628 (1758)
T KOG0994|consen 1592 DIRLAQQLLAKVQEETAAAEKLATSATQQLGELETRM 1628 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555555555555555555543
No 159
>PRK00977 exodeoxyribonuclease VII small subunit; Provisional
Probab=44.10 E-value=1.2e+02 Score=21.84 Aligned_cols=52 Identities=15% Similarity=0.278 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhchhhh-cchhHHHHHHHHHHHHHHHHHHHHHHH
Q 042996 10 LAEINGQITDIFRALSNGFQKLEKI-KDVNRQSRQLEELTDKMRECKRLIKEF 61 (261)
Q Consensus 10 l~~~e~~~~~i~~~i~~~~~~L~~~-~~~~~r~~~i~~i~~~l~ea~~ll~qm 61 (261)
|+..=.++..|+..++++--.|+.. ..-.+....++.|+..|..|+.-+..+
T Consensus 12 fEea~~~LEeIv~~LE~~~l~Lees~~lyeeg~~L~k~C~~~L~~ae~ki~~l 64 (80)
T PRK00977 12 FEEALAELEEIVTRLESGDLPLEESLAAFERGVALARQCQKKLQQAEQRVEKL 64 (80)
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555567777777777776555542 122444566666666666666555544
No 160
>PHA03054 IMV membrane protein; Provisional
Probab=44.01 E-value=34 Score=24.11 Aligned_cols=10 Identities=10% Similarity=0.255 Sum_probs=4.7
Q ss_pred HHHHHHHHhh
Q 042996 224 GVIAIIIVKL 233 (261)
Q Consensus 224 ~Ii~vi~~k~ 233 (261)
++.++.|+|.
T Consensus 62 ~l~~flYLK~ 71 (72)
T PHA03054 62 LLLIYLYLKV 71 (72)
T ss_pred HHHHHHHHhc
Confidence 3335555553
No 161
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=43.92 E-value=4.9e+02 Score=28.86 Aligned_cols=28 Identities=11% Similarity=0.138 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042996 173 LKAQTEQMSRIVNELDSIHFSIKKASQL 200 (261)
Q Consensus 173 L~~Qre~l~~~~~~l~~i~~~L~~s~~~ 200 (261)
+...+......+.++++....+....+-
T Consensus 356 ~~~a~~~~e~~~~~~~~~~~r~~~~~~~ 383 (1353)
T TIGR02680 356 IREAESRLEEERRRLDEEAGRLDDAERE 383 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444433
No 162
>PF07235 DUF1427: Protein of unknown function (DUF1427); InterPro: IPR009872 This family consists of several bacterial proteins of around 100 residues in length. The function of this family is unknown.
Probab=43.91 E-value=20 Score=26.46 Aligned_cols=24 Identities=29% Similarity=0.656 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHhhccCCCCccCCCCCCCCchh
Q 042996 221 IVIGVIAIIIVKLVNPNNKDIRDIPGLAPPAM 252 (261)
Q Consensus 221 l~i~Ii~vi~~k~~~~~~~~~~~~~~~~~~~~ 252 (261)
+..++++-++|.+++ +|+||||+-
T Consensus 7 L~aG~lvG~iy~ll~--------v~sPAPP~i 30 (90)
T PF07235_consen 7 LGAGLLVGVIYSLLK--------VPSPAPPVI 30 (90)
T ss_pred hhhhhHHHHHHHHhc--------CCCCCCcHh
Confidence 445555555566664 578899963
No 163
>KOG4552 consensus Vitamin-D-receptor interacting protein complex component [Transcription]
Probab=43.88 E-value=1.9e+02 Score=25.06 Aligned_cols=22 Identities=5% Similarity=0.412 Sum_probs=10.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 042996 38 NRQSRQLEELTDKMRECKRLIK 59 (261)
Q Consensus 38 ~~r~~~i~~i~~~l~ea~~ll~ 59 (261)
+.|-..|..++..|++|+..|.
T Consensus 84 EkrD~~IQqLqk~LK~aE~iLt 105 (272)
T KOG4552|consen 84 EKRDEVIQQLQKNLKSAEVILT 105 (272)
T ss_pred HHhHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555555554443
No 164
>PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins. It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO).
Probab=43.66 E-value=1.5e+02 Score=24.36 Aligned_cols=27 Identities=15% Similarity=0.139 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042996 177 TEQMSRIVNELDSIHFSIKKASQLVKE 203 (261)
Q Consensus 177 re~l~~~~~~l~~i~~~L~~s~~~l~~ 203 (261)
|+...+++.-++++.+...+.+.+++.
T Consensus 65 r~va~rvQ~vlgd~At~gERl~allsW 91 (156)
T PF08372_consen 65 RSVAGRVQNVLGDVATQGERLQALLSW 91 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 334444444555555555555555544
No 165
>PRK11519 tyrosine kinase; Provisional
Probab=43.65 E-value=3.7e+02 Score=27.40 Aligned_cols=23 Identities=17% Similarity=0.452 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 042996 42 RQLEELTDKMRECKRLIKEFDRE 64 (261)
Q Consensus 42 ~~i~~i~~~l~ea~~ll~qme~E 64 (261)
..+.+++.++++++.-+++|..+
T Consensus 274 ~ql~~l~~~L~~aE~~l~~fr~~ 296 (719)
T PRK11519 274 QQLPEVRSRLDVAENKLNAFRQD 296 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666666666655
No 166
>COG1580 FliL Flagellar basal body-associated protein [Cell motility and secretion]
Probab=43.52 E-value=37 Score=27.92 Aligned_cols=13 Identities=0% Similarity=-0.258 Sum_probs=5.6
Q ss_pred HHHHHHHHHHhhc
Q 042996 222 VIGVIAIIIVKLV 234 (261)
Q Consensus 222 ~i~Ii~vi~~k~~ 234 (261)
.+++.++++|-+.
T Consensus 30 ~~a~~~~~~~~~~ 42 (159)
T COG1580 30 ALAGAGYFFWFGS 42 (159)
T ss_pred HHHHHHHHHhhhc
Confidence 3344344444443
No 167
>PHA02562 46 endonuclease subunit; Provisional
Probab=43.49 E-value=3.2e+02 Score=26.52 Aligned_cols=21 Identities=19% Similarity=0.173 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 042996 44 LEELTDKMRECKRLIKEFDRE 64 (261)
Q Consensus 44 i~~i~~~l~ea~~ll~qme~E 64 (261)
+..++..+.++....++++.+
T Consensus 215 i~~l~~e~~~l~~~~~~l~~~ 235 (562)
T PHA02562 215 IARKQNKYDELVEEAKTIKAE 235 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444443333333333
No 168
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=42.95 E-value=69 Score=21.80 Aligned_cols=28 Identities=18% Similarity=0.180 Sum_probs=15.2
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 042996 204 IGRQVATDKCIMAMLFLIVIGVIAIIIV 231 (261)
Q Consensus 204 m~rr~~~dK~i~~~iill~i~Ii~vi~~ 231 (261)
+.++-...+-..++.+++++++++++++
T Consensus 28 ~~k~qk~~~~~~~i~~~~~i~~l~v~~~ 55 (59)
T PF09889_consen 28 YRKRQKRMRKTQYIFFGIFILFLAVWIF 55 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444556665566666555554
No 169
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=42.63 E-value=1.3e+02 Score=21.72 Aligned_cols=18 Identities=6% Similarity=0.230 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 042996 172 VLKAQTEQMSRIVNELDS 189 (261)
Q Consensus 172 ~L~~Qre~l~~~~~~l~~ 189 (261)
+...+.+.+..+-+.+.+
T Consensus 62 dv~~k~~~v~~~~~~v~~ 79 (90)
T PF06103_consen 62 DVNEKLEKVDPVFEAVAD 79 (90)
T ss_pred HHHHHHHhHHHHHHHHHH
Confidence 333333333333333333
No 170
>PRK14066 exodeoxyribonuclease VII small subunit; Provisional
Probab=42.46 E-value=1.2e+02 Score=21.54 Aligned_cols=52 Identities=13% Similarity=0.288 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhchhh-hcchhHHHHHHHHHHHHHHHHHHHHHHH
Q 042996 10 LAEINGQITDIFRALSNGFQKLEK-IKDVNRQSRQLEELTDKMRECKRLIKEF 61 (261)
Q Consensus 10 l~~~e~~~~~i~~~i~~~~~~L~~-~~~~~~r~~~i~~i~~~l~ea~~ll~qm 61 (261)
|+..=.++..|+..++++--.|+. +..-++-...++.|...|+.|+.-+..+
T Consensus 6 fEeal~~LE~IV~~LE~g~l~Leesl~lyeeG~~L~k~C~~~L~~ae~kv~~l 58 (75)
T PRK14066 6 FETALKKLEEVVKKLEGGELSLDDSLKAFEEGVKHAAFCSKKLDEAERRVEVL 58 (75)
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445666777777777555544 1223444566666666666666554443
No 171
>PF04906 Tweety: Tweety; InterPro: IPR006990 None of the members of the tweety (tty) family have been functionally characterised. However, they are considered to be transmembrane proteins with five potential membrane-spanning regions. A number of potential functions have been suggested on the basis of homology to the yeast FTR1 and FTH1 iron transporter proteins and the mammalian neurotensin receptors 1 and 2 in that they have a similar hydrophobicity profiles although there is no detectable sequence homology to the tweety-related proteins. It has been proposed that the tweety-related proteins could be involved in transport of iron or other divalent cations or alternatively that they may be membrane-bound receptors [].
Probab=42.28 E-value=2.8e+02 Score=26.27 Aligned_cols=55 Identities=15% Similarity=0.253 Sum_probs=27.2
Q ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042996 144 MMDETDQAIERSKQVVHETINVGTETAAVLKAQTEQMSRIVNELDSIHFSIKKASQLV 201 (261)
Q Consensus 144 ~l~~~~~~L~~s~~~~~ete~ig~~il~~L~~Qre~l~~~~~~l~~i~~~L~~s~~~l 201 (261)
.+......|.+++..+....+.+..- .....+.+..++..+..+...+..-..++
T Consensus 284 ~l~~~~~al~~~q~~~~~L~~~a~~~---fp~~~~~l~~i~~~Ln~~e~~l~~l~all 338 (406)
T PF04906_consen 284 RLTSSQRALSNMQSQVQGLLREAVPL---FPTAQEPLLAIQEDLNSTERSLHQLTALL 338 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh---CCCccchHHHHHHHHHHHHHHHHHHHhhc
Confidence 34445555555555555444433221 12222556666666666666665555443
No 172
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=42.15 E-value=2e+02 Score=23.93 Aligned_cols=16 Identities=25% Similarity=0.372 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 042996 80 LSEKKQSMVKELNSYV 95 (261)
Q Consensus 80 ~~~~~~~~~~~l~~~~ 95 (261)
+.++...+..+|+.|.
T Consensus 149 LrnKa~~L~~eL~~F~ 164 (171)
T PF04799_consen 149 LRNKANWLESELERFQ 164 (171)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444445555555444
No 173
>PF02038 ATP1G1_PLM_MAT8: ATP1G1/PLM/MAT8 family; InterPro: IPR000272 The FXYD protein family contains at least seven members in mammals []. Two other family members that are not obvious orthologs of any identified mammalian FXYD protein exist in zebrafish. All these proteins share a signature sequence of six conserved amino acids comprising the FXYD motif in the NH2-terminus, and two glycines and one serine residue in the transmembrane domain. FXYD proteins are widely distributed in mammalian tissues with prominent expression in tissues that perform fluid and solute transport or that are electrically excitable. Initial functional characterisation suggested that FXYD proteins act as channels or as modulators of ion channels however studies have revealed that most FXYD proteins have another specific function and act as tissue-specific regulatory subunits of the Na,K-ATPase. Each of these auxiliary subunits produces a distinct functional effect on the transport characteristics of the Na,K-ATPase that is adjusted to the specific functional demands of the tissue in which the FXYD protein is expressed. FXYD proteins appear to preferentially associate with Na,K-ATPase alpha1-beta isozymes, and affect their function in a way that render them operationally complementary or supplementary to coexisting isozymes.; GO: 0005216 ion channel activity, 0006811 ion transport, 0016020 membrane; PDB: 2JO1_A 2JP3_A 2ZXE_G 3A3Y_G 3N23_E 3B8E_H 3KDP_G 3N2F_E.
Probab=42.04 E-value=14 Score=24.34 Aligned_cols=14 Identities=29% Similarity=0.657 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHh
Q 042996 219 FLIVIGVIAIIIVK 232 (261)
Q Consensus 219 ill~i~Ii~vi~~k 232 (261)
++++++|++++--|
T Consensus 24 vlfi~Gi~iils~k 37 (50)
T PF02038_consen 24 VLFILGILIILSGK 37 (50)
T ss_dssp HHHHHHHHHHCTTH
T ss_pred HHHHHHHHHHHcCc
Confidence 33444444444333
No 174
>PRK14069 exodeoxyribonuclease VII small subunit; Provisional
Probab=41.93 E-value=1.4e+02 Score=22.32 Aligned_cols=52 Identities=13% Similarity=0.128 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhchhhh-cchhHHHHHHHHHHHHHHHHHHHHHHH
Q 042996 10 LAEINGQITDIFRALSNGFQKLEKI-KDVNRQSRQLEELTDKMRECKRLIKEF 61 (261)
Q Consensus 10 l~~~e~~~~~i~~~i~~~~~~L~~~-~~~~~r~~~i~~i~~~l~ea~~ll~qm 61 (261)
|+..=.++..|+..|+++--.|+.. ..-++-..+++.|+..|.+|+.-|..+
T Consensus 10 FEeal~~LEeIV~~LEsgdl~LEesl~lyeeGv~L~k~C~~~L~~AE~kV~~L 62 (95)
T PRK14069 10 FEDALRELEQIAEKLERQDFSLEESLKAYERGMELKKICSGILDDAEGKIEAL 62 (95)
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445566666666665444431 122344455555566655555544443
No 175
>PF06013 WXG100: Proteins of 100 residues with WXG; InterPro: IPR010310 ESAT-6 is a small protein appears to be of fundamental importance in virulence and protective immunity in Mycobacterium tuberculosis. Homologues have been detected in other Gram-positive bacterial species. It may represent a novel secretion system potentially driven by the PF01580 from PFAM domains in the YukA-like proteins []. Members of this protein family include secretion targets for type main variants of type VII secretion systems (T7SS), one found in the Actinobacteria, one found in the Firmicutes. This model was derived through iteration from PF06013 from PFAM. The best characterised member of this family is ESAT-6 from Mycobacterium tuberculosis. Members of this family usually are ~100 amino acids in length but occasionally have long C-terminal extension. ; PDB: 3FAV_A 1WA8_A 3Q4H_B 2KG7_A 2VRZ_B 2VS0_B 3OGI_A 3H6P_B 3GVM_B 3GWK_C ....
Probab=41.92 E-value=1.1e+02 Score=20.81 Aligned_cols=60 Identities=7% Similarity=0.165 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCChHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042996 42 RQLEELTDKMRECKRLIKEFDREVKDIEGRNDPETNKMLSEKKQSMVKELNSYVALKKQH 101 (261)
Q Consensus 42 ~~i~~i~~~l~ea~~ll~qme~Ev~~~~~s~~~~~r~~~~~~~~~~~~~l~~~~~~~k~~ 101 (261)
.....+.....+++..+.+++-.+..+..+=.......+......+...+..+...+..+
T Consensus 11 ~~a~~~~~~~~~l~~~~~~l~~~~~~l~~~W~G~a~~af~~~~~~~~~~~~~~~~~L~~~ 70 (86)
T PF06013_consen 11 AAAQQLQAQADELQSQLQQLESSIDSLQASWQGEAADAFQDKFEEWNQAFRQLNEALEEL 70 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHGGGBTSSTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444445444444322233333344444444444444444443333
No 176
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=41.88 E-value=1.5e+02 Score=29.40 Aligned_cols=31 Identities=13% Similarity=0.270 Sum_probs=15.1
Q ss_pred hHHHHHHHHHHHHH----HHHHHHHHHHHHHHhhh
Q 042996 38 NRQSRQLEELTDKM----RECKRLIKEFDREVKDI 68 (261)
Q Consensus 38 ~~r~~~i~~i~~~l----~ea~~ll~qme~Ev~~~ 68 (261)
++|...+..+.++. .++-.+..++..|+..+
T Consensus 303 e~Rl~~L~~l~RKY~~~~~~l~~~~~~~~~el~~L 337 (557)
T COG0497 303 EERLFALKSLARKYGVTIEDLLEYLDKIKEELAQL 337 (557)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHh
Confidence 44444444444443 44444555555555554
No 177
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=41.78 E-value=4.5e+02 Score=27.84 Aligned_cols=29 Identities=14% Similarity=0.255 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042996 173 LKAQTEQMSRIVNELDSIHFSIKKASQLV 201 (261)
Q Consensus 173 L~~Qre~l~~~~~~l~~i~~~L~~s~~~l 201 (261)
+..-...+......+..+...+.....-+
T Consensus 464 ~~~~~~~l~~~~~~l~~l~~~l~~l~~~~ 492 (1164)
T TIGR02169 464 LSKYEQELYDLKEEYDRVEKELSKLQREL 492 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444445555555555554444333
No 178
>KOG3366 consensus Mitochondrial F1F0-ATP synthase, subunit d/ATP7 [Energy production and conversion]
Probab=41.68 E-value=2e+02 Score=23.97 Aligned_cols=18 Identities=22% Similarity=0.233 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 042996 80 LSEKKQSMVKELNSYVAL 97 (261)
Q Consensus 80 ~~~~~~~~~~~l~~~~~~ 97 (261)
...+++.|.+++...+..
T Consensus 110 s~~~iq~l~k~le~v~~~ 127 (172)
T KOG3366|consen 110 SKKRIQELEKELEKVKSA 127 (172)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 346666777776665543
No 179
>PHA02681 ORF089 virion membrane protein; Provisional
Probab=41.58 E-value=42 Score=24.51 Aligned_cols=29 Identities=24% Similarity=0.480 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCccCCCCCCCCc
Q 042996 217 MLFLIVIGVIAIIIVKLVNPNNKDIRDIPGLAPP 250 (261)
Q Consensus 217 ~iill~i~Ii~vi~~k~~~~~~~~~~~~~~~~~~ 250 (261)
+++++++.|+.+++|-..++. .+|.|.||
T Consensus 7 ~~~~V~V~IVclliya~YRR~-----~i~~p~~~ 35 (92)
T PHA02681 7 LLTVIVISIVCYIVIMMYRRS-----CVSAPAVP 35 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHhc-----cCCCCCCC
Confidence 444577888888888788773 55655555
No 180
>PF02609 Exonuc_VII_S: Exonuclease VII small subunit; InterPro: IPR003761 Exonuclease VII is composed of two non-identical subunits; one large subunit and 4 small ones []. This enzyme catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield nucleoside 5'-phosphates.; GO: 0008855 exodeoxyribonuclease VII activity, 0006308 DNA catabolic process, 0009318 exodeoxyribonuclease VII complex; PDB: 1VP7_F.
Probab=41.35 E-value=1e+02 Score=20.15 Aligned_cols=46 Identities=15% Similarity=0.265 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHhhhhchhhh-cchhHHHHHHHHHHHHHHHHHHHH
Q 042996 13 INGQITDIFRALSNGFQKLEKI-KDVNRQSRQLEELTDKMRECKRLI 58 (261)
Q Consensus 13 ~e~~~~~i~~~i~~~~~~L~~~-~~~~~r~~~i~~i~~~l~ea~~ll 58 (261)
-=.++..|+..++++--.|+.. .--.+....++.|+..|..++.-+
T Consensus 4 ~~~~Le~Iv~~Le~~~~sLdes~~lyeeg~~l~~~c~~~L~~~e~~i 50 (53)
T PF02609_consen 4 AMERLEEIVEKLESGELSLDESLKLYEEGMELIKKCQERLEEAEQKI 50 (53)
T ss_dssp HHHHHHHHHHHHHTT-S-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345666776777664444431 112334455555555555555443
No 181
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=41.01 E-value=1.7e+02 Score=24.33 Aligned_cols=49 Identities=14% Similarity=0.273 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 042996 47 LTDKMRECKRLIKEFDREVKDIEGRNDPETNKMLSEKKQSMVKELNSYVALKKQHQTN 104 (261)
Q Consensus 47 i~~~l~ea~~ll~qme~Ev~~~~~s~~~~~r~~~~~~~~~~~~~l~~~~~~~k~~~~~ 104 (261)
++....+.+.-|++++.++..+ ..+..+.+.++....-+..++..+...
T Consensus 118 Vd~~~~eL~~eI~~L~~~i~~l---------e~~~~~~k~LrnKa~~L~~eL~~F~~~ 166 (171)
T PF04799_consen 118 VDQTKNELEDEIKQLEKEIQRL---------EEIQSKSKTLRNKANWLESELERFQEQ 166 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444445444433 134455666667777766666666554
No 182
>TIGR03061 pip_yhgE_Nterm YhgE/Pip N-terminal domain. This family contains the N-terminal domain of a family of multiple membrane-spanning proteins of Gram-positive bacteria. One member was shown to be a host protein essential for phage infection, so many members of this family are called "phage infection protein". A separate model, TIGR03062, represents the conserved C-terminal domain. The domains are separated by regions highly variable in both length and sequence, often containing extended heptad repeats as described in model TIGR03057.
Probab=40.68 E-value=50 Score=26.68 Aligned_cols=10 Identities=10% Similarity=0.351 Sum_probs=6.0
Q ss_pred HHhhhhhHHH
Q 042996 206 RQVATDKCIM 215 (261)
Q Consensus 206 rr~~~dK~i~ 215 (261)
++...||+++
T Consensus 4 ~~~~r~~~~~ 13 (164)
T TIGR03061 4 KRLRKNKLLR 13 (164)
T ss_pred HHhhcCcHHH
Confidence 4566677544
No 183
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=40.60 E-value=22 Score=27.97 Aligned_cols=20 Identities=30% Similarity=0.632 Sum_probs=9.5
Q ss_pred HHHHHHHH-HHHHHHhhccCC
Q 042996 218 LFLIVIGV-IAIIIVKLVNPN 237 (261)
Q Consensus 218 iill~i~I-i~vi~~k~~~~~ 237 (261)
+|.+++|+ |.+++.+++.++
T Consensus 3 ~i~lvvG~iiG~~~~r~~~~~ 23 (128)
T PF06295_consen 3 IIGLVVGLIIGFLIGRLTSSN 23 (128)
T ss_pred HHHHHHHHHHHHHHHHHhccc
Confidence 33334443 355555565554
No 184
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=40.35 E-value=4e+02 Score=27.58 Aligned_cols=19 Identities=21% Similarity=0.200 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHhhhh
Q 042996 11 AEINGQITDIFRALSNGFQ 29 (261)
Q Consensus 11 ~~~e~~~~~i~~~i~~~~~ 29 (261)
...+.++..++.+++....
T Consensus 507 ~~~~~~~~~li~~L~~~~~ 525 (771)
T TIGR01069 507 GEFKEEINVLIEKLSALEK 525 (771)
T ss_pred HhhHHHHHHHHHHHHHHHH
Confidence 3444455555544444433
No 185
>PF12998 ING: Inhibitor of growth proteins N-terminal histone-binding; InterPro: IPR024610 Histones undergo numerous post-translational modifications, including acetylation and methylation, at residues which are then probable docking sites for various chromatin remodelling complexes. Inhibitor of growth proteins (INGs) specifically bind to residues that have been thus modified. INGs carry a well-characterised C-terminal PHD-type zinc-finger domain, binding with lysine 4-tri-methylated histone H3 (H3K4me3), as well as this N-terminal domain that binds unmodified H3 tails. Although these two regions can bind histones independently, together they increase the apparent association of the ING for the H3 tail. This entry represents the N-terminal histone binding domain found in inhibitor proteins.; PDB: 4AFL_A.
Probab=40.32 E-value=1.5e+02 Score=21.74 Aligned_cols=50 Identities=18% Similarity=0.332 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhchhhhc-----chhHHHHHHHHHHHHHHHHHHH
Q 042996 8 DDLAEINGQITDIFRALSNGFQKLEKIK-----DVNRQSRQLEELTDKMRECKRL 57 (261)
Q Consensus 8 ~~l~~~e~~~~~i~~~i~~~~~~L~~~~-----~~~~r~~~i~~i~~~l~ea~~l 57 (261)
+++..++..++.++.++...+...-+.. .++++...+.+|+..+.++..+
T Consensus 22 ~~irelD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~l 76 (105)
T PF12998_consen 22 TLIRELDAKSQDLLEELDQQIQKFIKNHGSPSLSPEKRRELLKEIQEEYERALEL 76 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCTTS--S-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHhhcccccCChHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666666655532211 1245556666666666666555
No 186
>COG4068 Uncharacterized protein containing a Zn-ribbon [Function unknown]
Probab=40.31 E-value=88 Score=21.33 Aligned_cols=23 Identities=4% Similarity=0.173 Sum_probs=12.2
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHH
Q 042996 198 SQLVKEIGRQVATDKCIMAMLFL 220 (261)
Q Consensus 198 ~~~l~~m~rr~~~dK~i~~~iil 220 (261)
..+|.+=.+|...-.++++++++
T Consensus 30 ~eil~ker~R~r~~~~~~~li~a 52 (64)
T COG4068 30 GEILNKERKRQRNFMILMFLILA 52 (64)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44565555555555455555544
No 187
>PLN03160 uncharacterized protein; Provisional
Probab=40.19 E-value=9.3 Score=33.03 Aligned_cols=33 Identities=12% Similarity=0.276 Sum_probs=17.8
Q ss_pred HHhhhhhHHHHHHHH-HH-HHHHHHHHHhhccCCC
Q 042996 206 RQVATDKCIMAMLFL-IV-IGVIAIIIVKLVNPNN 238 (261)
Q Consensus 206 rr~~~dK~i~~~iil-l~-i~Ii~vi~~k~~~~~~ 238 (261)
||-..-+|+.|++.+ ++ .+++++++|-+|+|+.
T Consensus 32 ~r~~~~~c~~~~~a~~l~l~~v~~~l~~~vfrPk~ 66 (219)
T PLN03160 32 RRRNCIKCCGCITATLLILATTILVLVFTVFRVKD 66 (219)
T ss_pred ccccceEEHHHHHHHHHHHHHHHHheeeEEEEccC
Confidence 444445565555433 33 4444666666778754
No 188
>PRK02224 chromosome segregation protein; Provisional
Probab=40.12 E-value=4.4e+02 Score=27.27 Aligned_cols=35 Identities=11% Similarity=0.134 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042996 168 ETAAVLKAQTEQMSRIVNELDSIHFSIKKASQLVK 202 (261)
Q Consensus 168 ~il~~L~~Qre~l~~~~~~l~~i~~~L~~s~~~l~ 202 (261)
.+..++..-+..+..+..++......+.....-|.
T Consensus 650 ~l~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~i~ 684 (880)
T PRK02224 650 EAREDKERAEEYLEQVEEKLDELREERDDLQAEIG 684 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444443333
No 189
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=40.11 E-value=3.8e+02 Score=26.50 Aligned_cols=57 Identities=21% Similarity=0.437 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhchhhhc---chhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042996 8 DDLAEINGQITDIFRALSNGFQKLEKIK---DVNRQSRQLEELTDKMRECKRLIKEFDRE 64 (261)
Q Consensus 8 ~~l~~~e~~~~~i~~~i~~~~~~L~~~~---~~~~r~~~i~~i~~~l~ea~~ll~qme~E 64 (261)
..+..+...|-..+.+|..|...|.... +...-...+..++..|.++...|.+++++
T Consensus 219 ~l~~~~~~~~P~ql~el~~gy~~m~~~gy~~~~~~i~~~i~~l~~~i~~~~~~l~~l~l~ 278 (569)
T PRK04778 219 ELLKELQTELPDQLQELKAGYRELVEEGYHLDHLDIEKEIQDLKEQIDENLALLEELDLD 278 (569)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHHHHHHHHHhcChH
Confidence 4566777777788888999988865421 22334567888888888888888877766
No 190
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=39.92 E-value=1.9e+02 Score=22.92 Aligned_cols=58 Identities=16% Similarity=0.286 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhchhhhc---chhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042996 8 DDLAEINGQITDIFRALSNGFQKLEKIK---DVNRQSRQLEELTDKMRECKRLIKEFDREV 65 (261)
Q Consensus 8 ~~l~~~e~~~~~i~~~i~~~~~~L~~~~---~~~~r~~~i~~i~~~l~ea~~ll~qme~Ev 65 (261)
..++.+..++...-++++.....+.... ..+++.....++.....++......+..++
T Consensus 43 ~~~~~~~~~l~~~~~el~~~~~~l~~~~~~ls~~~~~~~~~~l~~~~~~l~~~~~~~~~~l 103 (158)
T PF03938_consen 43 EKFKALQKELQAKQKELQKLQQKLQSQKATLSEEERQKRQQELQQKEQELQQFQQQAQQQL 103 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTS----SSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555554444443321 234555666666666666666655555554
No 191
>PF00430 ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR002146 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunits B and B' from the F0 complex in F-ATPases found in chloroplasts and in bacterial plasma membranes. The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In bacterial and chloroplast F-ATPases, the peripheral stalk is composed of one copy of the delta subunit (homologous to OSCP in mitochondria), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o); PDB: 1L2P_A 2KHK_A 1B9U_A.
Probab=39.78 E-value=20 Score=27.64 Aligned_cols=7 Identities=14% Similarity=0.543 Sum_probs=2.6
Q ss_pred HHHHhhc
Q 042996 228 IIIVKLV 234 (261)
Q Consensus 228 vi~~k~~ 234 (261)
+++++|+
T Consensus 14 ~~l~~~~ 20 (132)
T PF00430_consen 14 FLLNKFL 20 (132)
T ss_dssp HHHHHHT
T ss_pred HHHHHHH
Confidence 3333333
No 192
>KOG4025 consensus Putative apoptosis related protein [Function unknown]
Probab=39.76 E-value=2.2e+02 Score=23.71 Aligned_cols=88 Identities=13% Similarity=0.157 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhchhhhc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCChHhHHHHHHHHHHH
Q 042996 9 DLAEINGQITDIFRALSNGFQKLEKIK-DVNRQSRQLEELTDKMRECKRLIKEFDREVKDIEGRNDPETNKMLSEKKQSM 87 (261)
Q Consensus 9 ~l~~~e~~~~~i~~~i~~~~~~L~~~~-~~~~r~~~i~~i~~~l~ea~~ll~qme~Ev~~~~~s~~~~~r~~~~~~~~~~ 87 (261)
.++.||++|+++-+.-...-.=|++++ +-+.|++-+..|+.--+.++++|.-...--+-+|-. .+..++.+.+.+
T Consensus 87 ~v~r~E~~fqeLn~ka~aLk~iLSriPdEinDR~~FLeTIK~IASaIKkLLd~vN~v~~~~p~t----~~~AvE~rKkEF 162 (207)
T KOG4025|consen 87 IVSRYEQDFQELNKKAIALKRILSRIPDEINDRHAFLETIKLIASAIKKLLDAVNAVYRIVPLT----AQPAVEKRKKEF 162 (207)
T ss_pred hhcCCCccHHHHHHHHHHHHHHHHhCcHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc----ccHHHHHHHHHH
Confidence 355667777666542221111134443 346688777777666666677766555443333322 233455554544
Q ss_pred HHHHHHHHHHHHH
Q 042996 88 VKELNSYVALKKQ 100 (261)
Q Consensus 88 ~~~l~~~~~~~k~ 100 (261)
.+=-.+|..-+|.
T Consensus 163 VkYSK~FS~TLKt 175 (207)
T KOG4025|consen 163 VKYSKRFSNTLKT 175 (207)
T ss_pred HHHHHHHHHHHHH
Confidence 4333333333333
No 193
>PF11446 DUF2897: Protein of unknown function (DUF2897); InterPro: IPR021550 This is a bacterial family of uncharacterised proteins.
Probab=39.62 E-value=24 Score=23.72 Aligned_cols=7 Identities=57% Similarity=0.999 Sum_probs=2.8
Q ss_pred HHHHHHH
Q 042996 221 IVIGVIA 227 (261)
Q Consensus 221 l~i~Ii~ 227 (261)
++++.|+
T Consensus 15 vIigNia 21 (55)
T PF11446_consen 15 VIIGNIA 21 (55)
T ss_pred HHHhHHH
Confidence 4444433
No 194
>PF07139 DUF1387: Protein of unknown function (DUF1387); InterPro: IPR009816 This family represents a conserved region approximately 300 residues long within a number of hypothetical proteins of unknown function that seem to be restricted to mammals.
Probab=39.27 E-value=2.6e+02 Score=25.48 Aligned_cols=18 Identities=17% Similarity=0.412 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 042996 82 EKKQSMVKELNSYVALKK 99 (261)
Q Consensus 82 ~~~~~~~~~l~~~~~~~k 99 (261)
.++-.++.+|..|..++|
T Consensus 243 ~Ql~ELRadIK~fvs~rk 260 (302)
T PF07139_consen 243 EQLAELRADIKHFVSERK 260 (302)
T ss_pred HHHHHHHHHHHHHhhhhh
Confidence 444455555555554443
No 195
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=38.64 E-value=6.4 Score=32.09 Aligned_cols=23 Identities=22% Similarity=0.593 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHhhccCCCCccCC
Q 042996 221 IVIGVIAIIIVKLVNPNNKDIRD 243 (261)
Q Consensus 221 l~i~Ii~vi~~k~~~~~~~~~~~ 243 (261)
|+++|+++||+...|++.++|=+
T Consensus 62 ill~il~lvf~~c~r~kktdfid 84 (154)
T PF04478_consen 62 ILLGILALVFIFCIRRKKTDFID 84 (154)
T ss_pred HHHHHHHhheeEEEecccCcccc
Confidence 45555555555445555555543
No 196
>PHA02902 putative IMV membrane protein; Provisional
Probab=38.49 E-value=82 Score=21.85 Aligned_cols=20 Identities=20% Similarity=0.291 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 042996 214 IMAMLFLIVIGVIAIIIVKL 233 (261)
Q Consensus 214 i~~~iill~i~Ii~vi~~k~ 233 (261)
|+.++++|++.+|...|.+.
T Consensus 8 i~~v~v~Ivclliya~YrR~ 27 (70)
T PHA02902 8 ILAVIVIIFCLLIYAAYKRY 27 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 33334445555555555544
No 197
>PF05454 DAG1: Dystroglycan (Dystrophin-associated glycoprotein 1); InterPro: IPR008465 Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5.5 kb transcript in Homo sapiens. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin receptor in muscle, where it may regulate agrin-induced acetylcholine receptor clustering at the neuromuscular junction. There is also evidence which suggests the function of dystroglycan as a part of the signal transduction pathway because it is shown that Grb2, a mediator of the Ras-related signal pathway, can interact with the cytoplasmic domain of dystroglycan. In general, aberrant expression of dystrophin-associated protein complex underlies the pathogenesis of Duchenne muscular dystrophy, Becker muscular dystrophy and severe childhood autosomal recessive muscular dystrophy. Interestingly, no genetic disease has been described for either [alpha]- or [beta]-dystroglycan. Dystroglycan is widely distributed in non-muscle tissues as well as in muscle tissues. During epithelial morphogenesis of kidney, the dystroglycan complex is shown to act as a receptor for the basement membrane. Dystroglycan expression in Mus musculus brain and neural retina has also been reported. However, the physiological role of dystroglycan in non-muscle tissues has remained unclear [].; PDB: 1EG4_P.
Probab=38.34 E-value=10 Score=34.23 Aligned_cols=12 Identities=33% Similarity=0.684 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHh
Q 042996 221 IVIGVIAIIIVK 232 (261)
Q Consensus 221 l~i~Ii~vi~~k 232 (261)
|+.+||+.++|+
T Consensus 160 LIA~iIa~icyr 171 (290)
T PF05454_consen 160 LIAGIIACICYR 171 (290)
T ss_dssp ------------
T ss_pred HHHHHHHHHhhh
Confidence 555666666666
No 198
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=38.03 E-value=23 Score=32.23 Aligned_cols=6 Identities=17% Similarity=0.589 Sum_probs=2.2
Q ss_pred HHHHhh
Q 042996 228 IIIVKL 233 (261)
Q Consensus 228 vi~~k~ 233 (261)
|++|++
T Consensus 276 YLILRY 281 (299)
T PF02009_consen 276 YLILRY 281 (299)
T ss_pred HHHHHH
Confidence 333333
No 199
>TIGR02588 conserved hypothetical protein TIGR02588. The function of this protein is unknown. It is always found as part of a two-gene operon with TIGR02587, a protein that appears to span the membrane seven times. It is found in Nostoc sp. PCC 7120, Agrobacterium tumefaciens, Sinorhizobium meliloti, and Gloeobacter violaceus, so far, all of which are bacterial.
Probab=37.96 E-value=47 Score=26.10 Aligned_cols=26 Identities=12% Similarity=0.212 Sum_probs=15.8
Q ss_pred HHHHHH-HHHHHHHHHHHHHhhccCCC
Q 042996 213 CIMAML-FLIVIGVIAIIIVKLVNPNN 238 (261)
Q Consensus 213 ~i~~~i-ill~i~Ii~vi~~k~~~~~~ 238 (261)
|+.++| ++|++++|.++.|-++..++
T Consensus 5 Wvt~~Is~~ill~viglv~y~~l~~~~ 31 (122)
T TIGR02588 5 WVTFGISTLILAAMFGLVAYDWLRYSN 31 (122)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhhccCC
Confidence 444444 44777777777777765543
No 200
>KOG4433 consensus Tweety transmembrane/cell surface protein [General function prediction only]
Probab=37.34 E-value=2.6e+02 Score=27.30 Aligned_cols=25 Identities=16% Similarity=0.429 Sum_probs=13.9
Q ss_pred hHHHHHHHH-HHHHHHHHHHHhhccC
Q 042996 212 KCIMAMLFL-IVIGVIAIIIVKLVNP 236 (261)
Q Consensus 212 K~i~~~iil-l~i~Ii~vi~~k~~~~ 236 (261)
||..+++++ |.+.++++.++.+-|.
T Consensus 209 RW~~~v~lL~l~LvvC~v~vlglak~ 234 (526)
T KOG4433|consen 209 RWLAYVLLLTLLLVVCLVLVLGLAKR 234 (526)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 566666555 4444555555555554
No 201
>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=37.25 E-value=4e+02 Score=25.86 Aligned_cols=45 Identities=11% Similarity=0.171 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhc
Q 042996 190 IHFSIKKASQLVKEIGRQVATDKCIMAMLFLIVIGVIAIIIVKLV 234 (261)
Q Consensus 190 i~~~L~~s~~~l~~m~rr~~~dK~i~~~iill~i~Ii~vi~~k~~ 234 (261)
..+.++...--+..|-|+.-.-++++.+-++|+.+-++||++-++
T Consensus 506 a~s~VD~~s~~l~~~lr~~psArif~~~YmallHLWvmivlLTYT 550 (554)
T KOG4677|consen 506 ARSKVDKGSAELEKILRLLPSARIFWKNYMALLHLWVMIVLLTYT 550 (554)
T ss_pred HHhhcchhhHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHhhcC
Confidence 333444444455667777655554444434444444455554443
No 202
>PRK05529 cell division protein FtsQ; Provisional
Probab=37.24 E-value=36 Score=30.03 Aligned_cols=20 Identities=10% Similarity=0.117 Sum_probs=13.6
Q ss_pred HHHHHHHhhhhhHHHHHHHH
Q 042996 201 VKEIGRQVATDKCIMAMLFL 220 (261)
Q Consensus 201 l~~m~rr~~~dK~i~~~iil 220 (261)
.+.+.||....|.++.+.+.
T Consensus 24 ~~~~~~~~~~r~~~~~~~~~ 43 (255)
T PRK05529 24 VRRFTTRIRRRFILLACAVG 43 (255)
T ss_pred hhchhhhccchhhhHHHHHH
Confidence 67777887777766655444
No 203
>PRK14063 exodeoxyribonuclease VII small subunit; Provisional
Probab=37.03 E-value=1.5e+02 Score=21.07 Aligned_cols=51 Identities=14% Similarity=0.172 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhchhhh-cchhHHHHHHHHHHHHHHHHHHHHHH
Q 042996 10 LAEINGQITDIFRALSNGFQKLEKI-KDVNRQSRQLEELTDKMRECKRLIKE 60 (261)
Q Consensus 10 l~~~e~~~~~i~~~i~~~~~~L~~~-~~~~~r~~~i~~i~~~l~ea~~ll~q 60 (261)
|+..=.++..|+..++++--.|+.. ..-.+-...++.|+..|..|+.-|..
T Consensus 7 fEeal~~LE~Iv~~LE~~~l~Leesl~lyeeG~~L~k~C~~~L~~aE~ki~~ 58 (76)
T PRK14063 7 FEEAISQLEHLVSKLEQGDVPLEEAISYFKEGMELSKLCDEKLKNVQEQMAV 58 (76)
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444456666777777665555441 12244446666666666666665543
No 204
>PRK00523 hypothetical protein; Provisional
Probab=37.03 E-value=38 Score=24.06 Aligned_cols=23 Identities=17% Similarity=0.287 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHH--HHHHHhhcc
Q 042996 213 CIMAMLFLIVIGVI--AIIIVKLVN 235 (261)
Q Consensus 213 ~i~~~iill~i~Ii--~vi~~k~~~ 235 (261)
||+++|++++++.+ |++-.|+++
T Consensus 7 ~I~l~i~~li~G~~~Gffiark~~~ 31 (72)
T PRK00523 7 ALGLGIPLLIVGGIIGYFVSKKMFK 31 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34433433343333 555444443
No 205
>PF13980 UPF0370: Uncharacterised protein family (UPF0370)
Probab=37.02 E-value=40 Score=22.97 Aligned_cols=25 Identities=28% Similarity=0.486 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCcc
Q 042996 217 MLFLIVIGVIAIIIVKLVNPNNKDI 241 (261)
Q Consensus 217 ~iill~i~Ii~vi~~k~~~~~~~~~ 241 (261)
+|+++++++|+-.+--+.+..-++|
T Consensus 10 iiLl~lvG~i~n~iK~L~RvD~K~f 34 (63)
T PF13980_consen 10 IILLILVGMIINGIKELRRVDHKKF 34 (63)
T ss_pred HHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 3444666776666655555444433
No 206
>PHA02692 hypothetical protein; Provisional
Probab=36.92 E-value=52 Score=23.17 Aligned_cols=11 Identities=18% Similarity=0.135 Sum_probs=5.2
Q ss_pred HHHHHHHHHhh
Q 042996 223 IGVIAIIIVKL 233 (261)
Q Consensus 223 i~Ii~vi~~k~ 233 (261)
+++.++.|+|.
T Consensus 59 ~vll~flYLK~ 69 (70)
T PHA02692 59 GVLLCFHYLKL 69 (70)
T ss_pred HHHHHHHHHhc
Confidence 33335555553
No 207
>PF14937 DUF4500: Domain of unknown function (DUF4500)
Probab=36.88 E-value=40 Score=24.72 Aligned_cols=29 Identities=28% Similarity=0.245 Sum_probs=18.3
Q ss_pred hhhhhHHHHHHHH-HHHHHHHHHHHhhccC
Q 042996 208 VATDKCIMAMLFL-IVIGVIAIIIVKLVNP 236 (261)
Q Consensus 208 ~~~dK~i~~~iil-l~i~Ii~vi~~k~~~~ 236 (261)
+.-||.||.++++ +.+.+..+.|.+...-
T Consensus 33 ~kPNk~iM~~Gl~a~~~c~gYi~Ym~~~~e 62 (86)
T PF14937_consen 33 VKPNKPIMAFGLIAITLCVGYIAYMHATYE 62 (86)
T ss_pred ccCCchhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 4568999988877 4444445555555443
No 208
>PRK05696 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=36.63 E-value=35 Score=28.12 Aligned_cols=10 Identities=0% Similarity=-0.233 Sum_probs=4.7
Q ss_pred HHHHHhhccC
Q 042996 227 AIIIVKLVNP 236 (261)
Q Consensus 227 ~vi~~k~~~~ 236 (261)
....|.|++.
T Consensus 35 g~~~~f~l~~ 44 (170)
T PRK05696 35 GGAAWFFMGS 44 (170)
T ss_pred HHHHHhhhcC
Confidence 3444445554
No 209
>PF03918 CcmH: Cytochrome C biogenesis protein; InterPro: IPR005616 Members of this family include NrfF, CcmH, CycL, Ccl2.; PDB: 2KW0_A 2HL7_A.
Probab=36.51 E-value=12 Score=30.45 Aligned_cols=43 Identities=7% Similarity=0.080 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhccCCCCccCCCCCCCCchhhhcc
Q 042996 212 KCIMAMLFLIVIGVIAIIIVKLVNPNNKDIRDIPGLAPPAMARRL 256 (261)
Q Consensus 212 K~i~~~iill~i~Ii~vi~~k~~~~~~~~~~~~~~~~~~~~~~~~ 256 (261)
-+++|++=++++++.+++++.++++..+.....+ ..+..++||
T Consensus 101 ~~~lW~~P~~~l~~g~~~~~~~~rr~~~~~~~~~--ls~~e~~rl 143 (148)
T PF03918_consen 101 TWLLWLGPFLLLLLGGALLFRRLRRWRRRAAQEE--LSEEERRRL 143 (148)
T ss_dssp ---------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCC--CCHHHHHHH
Confidence 3667776555555555555556655444333222 444556654
No 210
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=36.51 E-value=1.6e+02 Score=22.26 Aligned_cols=25 Identities=16% Similarity=0.502 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhc
Q 042996 45 EELTDKMRECKRLIKEFDREVKDIE 69 (261)
Q Consensus 45 ~~i~~~l~ea~~ll~qme~Ev~~~~ 69 (261)
..+...+.+.+.=+..+|.++..+|
T Consensus 38 ~~l~~~~~~~~~Rl~~lE~~l~~LP 62 (106)
T PF10805_consen 38 EKLEERLDEHDRRLQALETKLEHLP 62 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3344444444444444444444444
No 211
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=36.24 E-value=3.1e+02 Score=24.97 Aligned_cols=8 Identities=13% Similarity=0.352 Sum_probs=4.0
Q ss_pred CCccCCCC
Q 042996 238 NKDIRDIP 245 (261)
Q Consensus 238 ~~~~~~~~ 245 (261)
++++.|++
T Consensus 272 ~~~I~~~s 279 (314)
T PF04111_consen 272 KDKIGGVS 279 (314)
T ss_dssp TTEECTCE
T ss_pred CCccCCee
Confidence 44555553
No 212
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=36.14 E-value=33 Score=27.72 Aligned_cols=8 Identities=13% Similarity=0.393 Sum_probs=3.0
Q ss_pred HHHHHhhc
Q 042996 227 AIIIVKLV 234 (261)
Q Consensus 227 ~vi~~k~~ 234 (261)
++++++|+
T Consensus 19 ~~iL~~f~ 26 (159)
T PRK13461 19 LLILKHFF 26 (159)
T ss_pred HHHHHHHh
Confidence 33333343
No 213
>PRK14070 exodeoxyribonuclease VII small subunit; Provisional
Probab=36.00 E-value=1.5e+02 Score=20.75 Aligned_cols=50 Identities=18% Similarity=0.224 Sum_probs=34.1
Q ss_pred HHHHHHHHHHhhhhchhhh-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042996 16 QITDIFRALSNGFQKLEKI-KDVNRQSRQLEELTDKMRECKRLIKEFDREV 65 (261)
Q Consensus 16 ~~~~i~~~i~~~~~~L~~~-~~~~~r~~~i~~i~~~l~ea~~ll~qme~Ev 65 (261)
++..|+..|+++--.|+.. ..-.+-...++.|+..|..|+.-|..+-.+.
T Consensus 3 ~LEeIV~~LE~gel~Leesl~lyeeG~~L~k~C~~~L~~aE~kI~~l~~e~ 53 (69)
T PRK14070 3 ELEEIVNRLENEDLPLEESIKLFERGVELYRKCKEILQQNRLKIIDVMKEL 53 (69)
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5677888888886666542 2235566788888888888887766554443
No 214
>PTZ00046 rifin; Provisional
Probab=35.83 E-value=25 Score=32.76 Aligned_cols=7 Identities=14% Similarity=0.287 Sum_probs=2.9
Q ss_pred HHHHHHH
Q 042996 9 DLAEING 15 (261)
Q Consensus 9 ~l~~~e~ 15 (261)
.|++|++
T Consensus 71 RF~EYdE 77 (358)
T PTZ00046 71 RFEEYDE 77 (358)
T ss_pred HHHHHHH
Confidence 3444443
No 215
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=35.45 E-value=35 Score=27.75 Aligned_cols=16 Identities=13% Similarity=0.349 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHhhccC
Q 042996 221 IVIGVIAIIIVKLVNP 236 (261)
Q Consensus 221 l~i~Ii~vi~~k~~~~ 236 (261)
+.++|+++++.+|+.+
T Consensus 16 i~Flil~~ll~~~l~~ 31 (164)
T PRK14471 16 ILFLILLLLLAKFAWK 31 (164)
T ss_pred HHHHHHHHHHHHHhHH
Confidence 3444444555555443
No 216
>PF04678 DUF607: Protein of unknown function, DUF607; InterPro: IPR006769 This entry represents the C-terminal domain of coiled-coil domain containing protein 109.
Probab=35.33 E-value=2.6e+02 Score=23.17 Aligned_cols=8 Identities=0% Similarity=-0.151 Sum_probs=3.2
Q ss_pred HHHHHhhc
Q 042996 227 AIIIVKLV 234 (261)
Q Consensus 227 ~vi~~k~~ 234 (261)
.+.|+-++
T Consensus 137 ~y~yfl~t 144 (180)
T PF04678_consen 137 GYAYFLYT 144 (180)
T ss_pred HHHHHHHh
Confidence 34444333
No 217
>PRK01844 hypothetical protein; Provisional
Probab=35.33 E-value=42 Score=23.84 Aligned_cols=22 Identities=27% Similarity=0.323 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHH--HHHHHhhcc
Q 042996 214 IMAMLFLIVIGVI--AIIIVKLVN 235 (261)
Q Consensus 214 i~~~iill~i~Ii--~vi~~k~~~ 235 (261)
|+++|+.++++.+ |++-.|+++
T Consensus 7 I~l~I~~li~G~~~Gff~ark~~~ 30 (72)
T PRK01844 7 ILVGVVALVAGVALGFFIARKYMM 30 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444333 555444444
No 218
>PF06072 Herpes_US9: Alphaherpesvirus tegument protein US9; InterPro: IPR009278 This family consists of several US9 and related proteins from the Alphaherpesviruses. The function of the US9 protein is unknown although in Bovine herpesvirus 5 Us9 is essential for the anterograde spread of the virus from the olfactory mucosa to the bulb [].; GO: 0019033 viral tegument
Probab=35.27 E-value=1.4e+02 Score=20.38 Aligned_cols=13 Identities=31% Similarity=0.723 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHh
Q 042996 196 KASQLVKEIGRQV 208 (261)
Q Consensus 196 ~s~~~l~~m~rr~ 208 (261)
.|..-|+.|.|+.
T Consensus 10 TA~~FL~RvGr~q 22 (60)
T PF06072_consen 10 TATEFLRRVGRQQ 22 (60)
T ss_pred cHHHHHHHHhHHH
Confidence 4556677777665
No 219
>PF07010 Endomucin: Endomucin; InterPro: IPR010740 This family consists of several mammalian endomucin proteins. Endomucin is an early endothelial-specific antigen that is also expressed on putative hematopoietic progenitor cells.
Probab=35.25 E-value=46 Score=29.00 Aligned_cols=6 Identities=50% Similarity=0.573 Sum_probs=2.2
Q ss_pred HHHHHH
Q 042996 221 IVIGVI 226 (261)
Q Consensus 221 l~i~Ii 226 (261)
|+|.+.
T Consensus 198 iVitl~ 203 (259)
T PF07010_consen 198 IVITLS 203 (259)
T ss_pred HHHHHH
Confidence 333333
No 220
>PHA03386 P10 fibrous body protein; Provisional
Probab=35.17 E-value=1.6e+02 Score=22.00 Aligned_cols=26 Identities=12% Similarity=0.231 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042996 170 AAVLKAQTEQMSRIVNELDSIHFSIK 195 (261)
Q Consensus 170 l~~L~~Qre~l~~~~~~l~~i~~~L~ 195 (261)
...|..|.++|..+..++.+|++.|.
T Consensus 35 ~~~LDa~~~qL~~l~tkV~~Iq~iLn 60 (94)
T PHA03386 35 SQPLDGLPAQLTELDTKVSDIQSILT 60 (94)
T ss_pred chhhhhHHHHHHHHHHHHHHHHHhcC
Confidence 45577888888777777777766553
No 221
>PF09972 DUF2207: Predicted membrane protein (DUF2207); InterPro: IPR018702 This domain has no known function.
Probab=35.17 E-value=1.8e+02 Score=27.53 Aligned_cols=12 Identities=33% Similarity=0.515 Sum_probs=7.8
Q ss_pred CCCCCCCCchhh
Q 042996 242 RDIPGLAPPAMA 253 (261)
Q Consensus 242 ~~~~~~~~~~~~ 253 (261)
.++|+--|||..
T Consensus 266 ~~~P~~~~Pa~v 277 (511)
T PF09972_consen 266 REPPEDLSPAVV 277 (511)
T ss_pred eCCCCCCChHHh
Confidence 467766677755
No 222
>COG1256 FlgK Flagellar hook-associated protein [Cell motility and secretion]
Probab=35.13 E-value=4.3e+02 Score=26.21 Aligned_cols=43 Identities=12% Similarity=0.210 Sum_probs=21.3
Q ss_pred HHHHHHhhhhchhhhc-chhHHHHHHHHHHHHHHHHHHHHHHHH
Q 042996 20 IFRALSNGFQKLEKIK-DVNRQSRQLEELTDKMRECKRLIKEFD 62 (261)
Q Consensus 20 i~~~i~~~~~~L~~~~-~~~~r~~~i~~i~~~l~ea~~ll~qme 62 (261)
.+.+..+.++.|...+ +...|...+...+.-...+..+-++++
T Consensus 112 ~L~~ff~s~q~la~~P~~~a~r~~vl~~a~~l~~~in~~~~~L~ 155 (552)
T COG1256 112 LLNDFFNSLQELASNPSDTAARQAVLSKAQTLVNQINNTYEQLT 155 (552)
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444432 335566666666655555555443333
No 223
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=35.06 E-value=26 Score=32.57 Aligned_cols=7 Identities=14% Similarity=0.467 Sum_probs=2.8
Q ss_pred HHHHHhh
Q 042996 227 AIIIVKL 233 (261)
Q Consensus 227 ~vi~~k~ 233 (261)
+|+++++
T Consensus 329 IYLILRY 335 (353)
T TIGR01477 329 IYLILRY 335 (353)
T ss_pred HHHHHHh
Confidence 3334433
No 224
>PF12958 DUF3847: Protein of unknown function (DUF3847); InterPro: IPR024215 This entry represents a family of uncharacterised proteins that were found by clustering human gut metagenomic sequences [].
Probab=34.95 E-value=1.8e+02 Score=21.33 Aligned_cols=48 Identities=19% Similarity=0.258 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhhhhhHHHHHHHH
Q 042996 173 LKAQTEQMSRIVNELDSIHFSIKKASQLVKEIG---RQVATDKCIMAMLFL 220 (261)
Q Consensus 173 L~~Qre~l~~~~~~l~~i~~~L~~s~~~l~~m~---rr~~~dK~i~~~iil 220 (261)
|..-++.+..+..++......+.....-.+... |+..++++|--+.++
T Consensus 3 Le~l~~e~e~~~~kl~q~e~~~k~L~nr~k~l~k~eRK~RtHRLi~rGa~l 53 (86)
T PF12958_consen 3 LEELQAEIEKAEKKLEQAEHKIKQLENRKKKLEKKERKERTHRLIERGAIL 53 (86)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 344455566677777777777777777777776 999999999888776
No 225
>PF11712 Vma12: Endoplasmic reticulum-based factor for assembly of V-ATPase; InterPro: IPR021013 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. The yeast vacuolar proton-translocating ATPase (V-ATPase) is the best characterised member of the V-ATPase family. A total of thirteen genes are required for encoding the subunits of the enzyme complex itself and an additional three for providing factors necessary for the assembly of the whole. Vma12 is one of these latter, all three of which are localised to the endoplasmic reticulum [].
Probab=34.93 E-value=44 Score=26.62 Aligned_cols=28 Identities=4% Similarity=0.248 Sum_probs=18.3
Q ss_pred hhhhHHHHHHHHHHHHHH-HHHHHhhccC
Q 042996 209 ATDKCIMAMLFLIVIGVI-AIIIVKLVNP 236 (261)
Q Consensus 209 ~~dK~i~~~iill~i~Ii-~vi~~k~~~~ 236 (261)
..-|+++++++.++++++ +++|.+++.+
T Consensus 109 ~~~Rvllgl~~al~vlvAEv~l~~~y~~k 137 (142)
T PF11712_consen 109 FPYRVLLGLFGALLVLVAEVVLYIRYLRK 137 (142)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334566666666777777 7777777654
No 226
>PF15361 RIC3: Resistance to inhibitors of cholinesterase homologue 3
Probab=34.90 E-value=29 Score=28.30 Aligned_cols=16 Identities=31% Similarity=0.638 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHhhcc
Q 042996 220 LIVIGVIAIIIVKLVN 235 (261)
Q Consensus 220 ll~i~Ii~vi~~k~~~ 235 (261)
+=.|+|++|+.|+|+|
T Consensus 88 lYtiGI~~f~lY~l~K 103 (152)
T PF15361_consen 88 LYTIGIVLFILYTLFK 103 (152)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3556666666666666
No 227
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=34.84 E-value=32 Score=28.42 Aligned_cols=11 Identities=18% Similarity=0.271 Sum_probs=4.1
Q ss_pred HHHHHHHHhhc
Q 042996 224 GVIAIIIVKLV 234 (261)
Q Consensus 224 ~Ii~vi~~k~~ 234 (261)
+|+++++.+|+
T Consensus 29 liL~~lL~~~l 39 (173)
T PRK13453 29 IVLLALLKKFA 39 (173)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 228
>PF12575 DUF3753: Protein of unknown function (DUF3753); InterPro: IPR009175 This group represents an uncharacterised conserved protein belonging to poxvirus family I2.
Probab=34.62 E-value=61 Score=23.03 Aligned_cols=15 Identities=13% Similarity=0.348 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHhhcc
Q 042996 221 IVIGVIAIIIVKLVN 235 (261)
Q Consensus 221 l~i~Ii~vi~~k~~~ 235 (261)
++++|++++++-++|
T Consensus 56 i~v~ii~~l~flYLK 70 (72)
T PF12575_consen 56 IFVLIIVLLTFLYLK 70 (72)
T ss_pred HHHHHHHHHHHHHhc
Confidence 444444555554443
No 229
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=34.58 E-value=3.7e+02 Score=24.71 Aligned_cols=23 Identities=22% Similarity=0.384 Sum_probs=14.8
Q ss_pred CcchhhHHHHHHHHHHHHHHHHH
Q 042996 2 DLSSISDDLAEINGQITDIFRAL 24 (261)
Q Consensus 2 ~~~~~s~~l~~~e~~~~~i~~~i 24 (261)
|...+..++..++.++..+-..+
T Consensus 75 d~~~~~~~l~~l~~~~~~l~a~~ 97 (423)
T TIGR01843 75 DATDVEADAAELESQVLRLEAEV 97 (423)
T ss_pred ccchhhhHHHHHHHHHHHHHHHH
Confidence 45556667777777777665444
No 230
>PRK13664 hypothetical protein; Provisional
Probab=34.56 E-value=48 Score=22.45 Aligned_cols=24 Identities=21% Similarity=0.488 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHhhccCCCCcc
Q 042996 218 LFLIVIGVIAIIIVKLVNPNNKDI 241 (261)
Q Consensus 218 iill~i~Ii~vi~~k~~~~~~~~~ 241 (261)
|+++++++|+-.|--+.+...++|
T Consensus 12 ill~lvG~i~N~iK~l~RvD~Kkf 35 (62)
T PRK13664 12 VLVFLVGVLLNVIKDLKRVDHKKF 35 (62)
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHH
Confidence 334667777666655555554544
No 231
>PF13800 Sigma_reg_N: Sigma factor regulator N-terminal
Probab=34.55 E-value=79 Score=23.22 Aligned_cols=9 Identities=22% Similarity=0.457 Sum_probs=3.8
Q ss_pred HHHHHHHHh
Q 042996 200 LVKEIGRQV 208 (261)
Q Consensus 200 ~l~~m~rr~ 208 (261)
+++.-.|+.
T Consensus 4 i~kK~K~k~ 12 (96)
T PF13800_consen 4 ILKKAKRKS 12 (96)
T ss_pred HHHHHHHHH
Confidence 444444443
No 232
>PRK14585 pgaD putative PGA biosynthesis protein; Provisional
Probab=34.51 E-value=57 Score=26.11 Aligned_cols=28 Identities=14% Similarity=0.164 Sum_probs=22.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhhccC
Q 042996 209 ATDKCIMAMLFLIVIGVIAIIIVKLVNP 236 (261)
Q Consensus 209 ~~dK~i~~~iill~i~Ii~vi~~k~~~~ 236 (261)
..+.+.+|+.|+++-|+++|+|.++-+.
T Consensus 50 ~l~tl~~Y~~iAv~nAvvLI~WA~YNq~ 77 (137)
T PRK14585 50 ARSRLQFYFLLAVANAVVLIVWALYNKL 77 (137)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566888888888889999999888554
No 233
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=34.48 E-value=1.8e+02 Score=21.14 Aligned_cols=24 Identities=13% Similarity=0.155 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 042996 167 TETAAVLKAQTEQMSRIVNELDSI 190 (261)
Q Consensus 167 ~~il~~L~~Qre~l~~~~~~l~~i 190 (261)
..+-+++..+...|.....-+..+
T Consensus 39 ~~~~~e~~~~~~~l~~s~~ll~~l 62 (92)
T PF03908_consen 39 RSTNDEYDGQSSLLKKSRKLLKKL 62 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445555555555555555443
No 234
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=34.46 E-value=1.6e+02 Score=20.53 Aligned_cols=89 Identities=13% Similarity=0.306 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhchhhhc------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCChHhHHHHHHH
Q 042996 10 LAEINGQITDIFRALSNGFQKLEKIK------DVNRQSRQLEELTDKMRECKRLIKEFDREVKDIEGRNDPETNKMLSEK 83 (261)
Q Consensus 10 l~~~e~~~~~i~~~i~~~~~~L~~~~------~~~~r~~~i~~i~~~l~ea~~ll~qme~Ev~~~~~s~~~~~r~~~~~~ 83 (261)
+..|...+..+..=|...-..|.... .........+.+...|...+..++.+.-....+.. ..+.....+..+
T Consensus 3 ~~~f~~~~~~l~~Wl~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~ei~~~~~~l~~l~~~~~~L~~-~~~~~~~~i~~~ 81 (105)
T PF00435_consen 3 LQQFQQEADELLDWLQETEAKLSSSEPGSDLEELEEQLKKHKELQEEIESRQERLESLNEQAQQLID-SGPEDSDEIQEK 81 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCSCTHSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH-cCCCcHHHHHHH
Confidence 44556655555554554444442211 12333344555555565555555555555544422 224444567777
Q ss_pred HHHHHHHHHHHHHHHH
Q 042996 84 KQSMVKELNSYVALKK 99 (261)
Q Consensus 84 ~~~~~~~l~~~~~~~k 99 (261)
+..+...++.+.....
T Consensus 82 ~~~l~~~w~~l~~~~~ 97 (105)
T PF00435_consen 82 LEELNQRWEALCELVE 97 (105)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7777777777665443
No 235
>PF10661 EssA: WXG100 protein secretion system (Wss), protein EssA; InterPro: IPR018920 The Wss (WXG100 protein secretion system) in Staphylococcus aureus seems to be encoded by a locus of eight ORFs, called ess (eSAT-6 secretion system) []. This locus encodes, amongst several other proteins, EssA, a protein predicted to possess one transmembrane domain. Due to its predicted membrane location and its absolute requirement for WXG100 protein secretion, it has been speculated that EssA could form a secretion apparatus in conjunction with YukC and YukAB. Proteins homologous to EssA, YukC, EsaA and YukD were absent from mycobacteria []. Members of this family are associated with type VII secretion of WXG100 family targets in the Firmicutes, but not in the Actinobacteria. This highly divergent protein family consists largely of a central region of highly polar low-complexity sequence containing occasional LF motifs in weak repeats about 17 residues in length, flanked by hydrophobic N- and C-terminal regions.
Probab=34.41 E-value=52 Score=26.58 Aligned_cols=9 Identities=22% Similarity=0.360 Sum_probs=5.9
Q ss_pred hhhhhcCCC
Q 042996 109 KRVDLFDGP 117 (261)
Q Consensus 109 ~R~~L~~~~ 117 (261)
-++.||...
T Consensus 69 ~k~~LF~~~ 77 (145)
T PF10661_consen 69 IKNSLFTNK 77 (145)
T ss_pred HHHHhCcCc
Confidence 467888654
No 236
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=33.87 E-value=1.9e+02 Score=21.22 Aligned_cols=60 Identities=8% Similarity=0.271 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHhhhhchhhhcc----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 042996 12 EINGQITDIFRALSNGFQKLEKIKD----VNRQSRQLEELTDKMRECKRLIKEFDREVKDIEGR 71 (261)
Q Consensus 12 ~~e~~~~~i~~~i~~~~~~L~~~~~----~~~r~~~i~~i~~~l~ea~~ll~qme~Ev~~~~~s 71 (261)
....++...+..+++.+.....+.. ..+....-+++.+.+++++..|..++.-|.-+.++
T Consensus 5 ~v~~ev~~sl~~l~~~~~~~~~~~~~~~~~~e~~~~~~eL~~~l~~ie~~L~DL~~aV~ive~n 68 (97)
T PF09177_consen 5 VVKDEVQSSLDRLESLYRRWQRLRSDTSSSEELKWLKRELRNALQSIEWDLEDLEEAVRIVEKN 68 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTHCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCCCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3455666666666666655444321 23556778888899999999999999888766543
No 237
>KOG2196 consensus Nuclear porin [Nuclear structure]
Probab=33.77 E-value=3.4e+02 Score=24.02 Aligned_cols=26 Identities=15% Similarity=0.327 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042996 42 RQLEELTDKMRECKRLIKEFDREVKD 67 (261)
Q Consensus 42 ~~i~~i~~~l~ea~~ll~qme~Ev~~ 67 (261)
..+.-|.....|++.+|..+|-.+..
T Consensus 134 q~L~~I~sqQ~ELE~~L~~lE~k~~~ 159 (254)
T KOG2196|consen 134 QELEFILSQQQELEDLLDPLETKLEL 159 (254)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45667777788889999988887765
No 238
>PTZ00464 SNF-7-like protein; Provisional
Probab=33.65 E-value=3.1e+02 Score=23.56 Aligned_cols=50 Identities=10% Similarity=0.166 Sum_probs=35.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042996 157 QVVHETINVGTETAAVLKAQTEQMSRIVNELDSIHFSIKKASQLVKEIGRQ 207 (261)
Q Consensus 157 ~~~~ete~ig~~il~~L~~Qre~l~~~~~~l~~i~~~L~~s~~~l~~m~rr 207 (261)
..+.++-..|..+|..++.+- .|+++++-++++...+..++.+=..+++.
T Consensus 101 ~~vv~amk~g~kaLK~~~k~i-~id~Vd~l~Dei~E~~e~~~EI~e~Ls~~ 150 (211)
T PTZ00464 101 KVQVDAMKQAAKTLKKQFKKL-NVDKVEDLQDELADLYEDTQEIQEIMGRA 150 (211)
T ss_pred HHHHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 344566667777777777776 67777777777777777777776666653
No 239
>PRK14740 kdbF potassium-transporting ATPase subunit F; Provisional
Probab=33.42 E-value=98 Score=17.90 Aligned_cols=24 Identities=13% Similarity=0.332 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccC
Q 042996 213 CIMAMLFLIVIGVIAIIIVKLVNP 236 (261)
Q Consensus 213 ~i~~~iill~i~Ii~vi~~k~~~~ 236 (261)
|+.++...+..++.+|+++-.+|+
T Consensus 3 ~~~wls~a~a~~Lf~YLv~ALlRa 26 (29)
T PRK14740 3 VLDWLSLALATGLFVYLLVALLRA 26 (29)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc
Confidence 455665556667777787777776
No 240
>KOG4451 consensus Uncharacterized conserved protein (tumor-associated antigen HCA127 in humans) [Function unknown]
Probab=33.36 E-value=3.3e+02 Score=23.87 Aligned_cols=44 Identities=14% Similarity=0.355 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhchhhhcchhHHHHHHHHHHHHHHHHHHH
Q 042996 8 DDLAEINGQITDIFRALSNGFQKLEKIKDVNRQSRQLEELTDKMRECKRL 57 (261)
Q Consensus 8 ~~l~~~e~~~~~i~~~i~~~~~~L~~~~~~~~r~~~i~~i~~~l~ea~~l 57 (261)
+.+++|+.+...++ ...+++++.+ .+-++.++++++.++..+.+
T Consensus 50 ~~leey~~em~~lL---~ekm~Hveel---r~iHadiN~men~ikq~k~~ 93 (286)
T KOG4451|consen 50 ENLEEYELEMGVLL---LEKMGHVEEL---REIHADINEMENDIKQVKAL 93 (286)
T ss_pred HHHHHHHHHHHHHH---HHHHhhHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 56788888888877 6677776653 44556666666666555544
No 241
>PF09777 OSTMP1: Osteopetrosis-associated transmembrane protein 1 precursor; InterPro: IPR019172 Osteopetrosis-associated transmembrane protein 1 (OSTM1) is required for osteoclast and melanocyte maturation and function. Mutations in OSTM1 give rise to autosomal recessive osteopetrosis, also called autosomal recessive Albers-Schonberg disease [, ].
Probab=33.31 E-value=71 Score=27.99 Aligned_cols=62 Identities=11% Similarity=0.065 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHH-HHHH---Hhhhhh----HHHHHHHHHHHHHHHHHHHhhccCC--CCccCCCCCCCCc
Q 042996 189 SIHFSIKKASQLVK-EIGR---QVATDK----CIMAMLFLIVIGVIAIIIVKLVNPN--NKDIRDIPGLAPP 250 (261)
Q Consensus 189 ~i~~~L~~s~~~l~-~m~r---r~~~dK----~i~~~iill~i~Ii~vi~~k~~~~~--~~~~~~~~~~~~~ 250 (261)
|+.+.+.+.+.+=. .+.+ +.-+-+ +|.+.++++++-++||+...+...+ .+-+++.|+.+|.
T Consensus 160 DveD~MN~Tr~lWs~~~~C~~~~~~~~~~~~~~i~v~~~vl~lpv~FY~~s~~~~~~~~r~l~~~~r~~s~~ 231 (237)
T PF09777_consen 160 DVEDAMNRTRHLWSKTFNCSVPCKDEVPSETAVIAVSVFVLFLPVLFYLSSYLHSERKKRKLILPKRLKSSL 231 (237)
T ss_pred hHHHHHHHHHHHhcccccCCCcccccccchhHHHHHHHHHHHHHHHHHHhheeeeccccccccccCcccCcc
Confidence 34455555554433 3555 333222 3333344455666677777665543 3455555555554
No 242
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=33.03 E-value=6.8e+02 Score=27.36 Aligned_cols=39 Identities=15% Similarity=0.390 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCChHhHHHHHHHHHHHHHHHHHHH
Q 042996 51 MRECKRLIKEFDREVKDIEGRNDPETNKMLSEKKQSMVKELNSYV 95 (261)
Q Consensus 51 l~ea~~ll~qme~Ev~~~~~s~~~~~r~~~~~~~~~~~~~l~~~~ 95 (261)
+.+.++.|..++.|+..+. +...+ ++++..|+..+..+-
T Consensus 860 l~~~~~~ie~l~kE~e~~q-----e~~~K-k~~i~~lq~~i~~i~ 898 (1293)
T KOG0996|consen 860 LKELEEQIEELKKEVEELQ-----EKAAK-KARIKELQNKIDEIG 898 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHH-----HhhhH-HHHHHHHHHHHHHhh
Confidence 3455555666666665431 11112 355555555555443
No 243
>PRK14775 lipoprotein signal peptidase; Provisional
Probab=32.87 E-value=55 Score=27.16 Aligned_cols=30 Identities=20% Similarity=0.276 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHhhccCCCCccCCCCCCCCchh
Q 042996 221 IVIGVIAIIIVKLVNPNNKDIRDIPGLAPPAM 252 (261)
Q Consensus 221 l~i~Ii~vi~~k~~~~~~~~~~~~~~~~~~~~ 252 (261)
|+++++++++..++..+ +. +..|.++|||.
T Consensus 136 I~iGv~lll~~~~~~~~-~~-~~~~~~~~~~~ 165 (170)
T PRK14775 136 VTCGVICFLCLEVMYHA-KA-CVDTSGDPDAL 165 (170)
T ss_pred HHHHHHHHHHHHHhccc-cc-ccccCCCchhh
Confidence 56666666665554432 22 22223688884
No 244
>PF09451 ATG27: Autophagy-related protein 27; InterPro: IPR018939 Autophagy is a degradative transport pathway that delivers cytosolic proteins to the lysosome (vacuole) [] and is induced by starvation []. Cytosolic proteins appear inside the vacuole enclosed in autophagic vesicles. Autophagy significantly differs from other transport pathways by using double membrane layered transport intermediates, called autophagosomes [, ]. The breakdown of vesicular transport intermediates is a unique feature of autophagy []. Autophagy can also function in the elimination of invading bacteria and antigens []. There are more than 25 AuTophaGy-related (ATG) genes that are essential for autophagy, although it is still not known how the autophagosome is made. Atg9 is a potential membrane carrier to deliver lipids that are used to form the vesicle. Atg27 is another transmembrane protein, and is a cycling protein []. It acts as an effector of VPS34 phosphatidylinositol 3-phosphate kinase signalling and regulates the cytoplasm to vacuole transport (Cvt) vesicle formation. It is also required for autophagy-dependent cycling of ATG9.
Probab=32.76 E-value=44 Score=29.70 Aligned_cols=19 Identities=11% Similarity=0.259 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 042996 213 CIMAMLFLIVIGVIAIIIV 231 (261)
Q Consensus 213 ~i~~~iill~i~Ii~vi~~ 231 (261)
|+.|++|++|+++++|+++
T Consensus 202 ~f~wl~i~~~l~~~~Y~i~ 220 (268)
T PF09451_consen 202 FFTWLFIILFLFLAAYLIF 220 (268)
T ss_pred HHHHHHHHHHHHHHHHhhh
Confidence 4555555545544444443
No 245
>COG4499 Predicted membrane protein [Function unknown]
Probab=32.59 E-value=59 Score=30.65 Aligned_cols=29 Identities=21% Similarity=0.120 Sum_probs=19.0
Q ss_pred HhhhhhHHHHHH-HHHHHHHHHHHHHhhcc
Q 042996 207 QVATDKCIMAML-FLIVIGVIAIIIVKLVN 235 (261)
Q Consensus 207 r~~~dK~i~~~i-ill~i~Ii~vi~~k~~~ 235 (261)
+....||+.++. ++++++||.+.|+.|+.
T Consensus 216 k~~ifk~~giGliillvl~li~~~Y~~f~~ 245 (434)
T COG4499 216 KYTIFKYFGIGLIILLVLLLIYFTYYYFSN 245 (434)
T ss_pred cceehhhHHHhHHHHHHHHHHHHHHHHHHc
Confidence 455667887754 44777777777766654
No 246
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=32.55 E-value=15 Score=25.45 Aligned_cols=15 Identities=20% Similarity=0.374 Sum_probs=0.5
Q ss_pred HHHHHHHHHhhccCC
Q 042996 223 IGVIAIIIVKLVNPN 237 (261)
Q Consensus 223 i~Ii~vi~~k~~~~~ 237 (261)
+++|++++|++-+++
T Consensus 26 ilLIlf~iyR~rkkd 40 (64)
T PF01034_consen 26 ILLILFLIYRMRKKD 40 (64)
T ss_dssp -----------S---
T ss_pred HHHHHHHHHHHHhcC
Confidence 333355556554443
No 247
>PRK14758 hypothetical protein; Provisional
Probab=32.35 E-value=86 Score=17.71 Aligned_cols=14 Identities=29% Similarity=0.572 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHH
Q 042996 215 MAMLFLIVIGVIAI 228 (261)
Q Consensus 215 ~~~iill~i~Ii~v 228 (261)
++++++|+++++..
T Consensus 9 liLivlIlCalia~ 22 (27)
T PRK14758 9 FILIILILCALIAA 22 (27)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444466666643
No 248
>PRK11281 hypothetical protein; Provisional
Probab=32.35 E-value=6.9e+02 Score=27.20 Aligned_cols=46 Identities=13% Similarity=0.200 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042996 162 TINVGTETAAVLKAQTEQMSRIVNELDSIHFSIKKASQLVKEIGRQ 207 (261)
Q Consensus 162 te~ig~~il~~L~~Qre~l~~~~~~l~~i~~~L~~s~~~l~~m~rr 207 (261)
-.++-.+..+.|..|.+.+..+..+-..+.+.+++.....+.+.-+
T Consensus 283 ~~~~N~~Ls~~L~~~t~~~~~l~~~~~~~~~~l~~~~q~~~~i~eq 328 (1113)
T PRK11281 283 ELEINLQLSQRLLKATEKLNTLTQQNLRVKNWLDRLTQSERNIKEQ 328 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3355666677888888888888888888888888887777755443
No 249
>PF07438 DUF1514: Protein of unknown function (DUF1514); InterPro: IPR009999 This entry is represented by Bacteriophage phi PVL, Orf60. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several Staphylococcus aureus and related bacteriophage proteins of around 65 residues in length. The function of this family is unknown.
Probab=32.29 E-value=39 Score=23.41 Aligned_cols=11 Identities=18% Similarity=0.413 Sum_probs=4.1
Q ss_pred HHHHHHHHHHH
Q 042996 216 AMLFLIVIGVI 226 (261)
Q Consensus 216 ~~iill~i~Ii 226 (261)
|+++.+++||+
T Consensus 2 WIiiSIvLai~ 12 (66)
T PF07438_consen 2 WIIISIVLAIA 12 (66)
T ss_pred hhhHHHHHHHH
Confidence 33333333333
No 250
>PF11166 DUF2951: Protein of unknown function (DUF2951); InterPro: IPR021337 This family of proteins has no known function. It has a highly conserved sequence.
Probab=32.15 E-value=2.2e+02 Score=21.36 Aligned_cols=22 Identities=14% Similarity=0.232 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhc
Q 042996 213 CIMAMLFLIVIGVIAIIIVKLV 234 (261)
Q Consensus 213 ~i~~~iill~i~Ii~vi~~k~~ 234 (261)
|++.+|..|+-.+|+.+...+|
T Consensus 75 wilGlvgTi~gsliia~lr~~f 96 (98)
T PF11166_consen 75 WILGLVGTIFGSLIIALLRTIF 96 (98)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4544444344444433333333
No 251
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=32.11 E-value=1.6e+02 Score=19.78 Aligned_cols=6 Identities=17% Similarity=0.429 Sum_probs=2.2
Q ss_pred Hhhhhc
Q 042996 25 SNGFQK 30 (261)
Q Consensus 25 ~~~~~~ 30 (261)
++.+++
T Consensus 6 En~~~~ 11 (55)
T PF05377_consen 6 ENELPR 11 (55)
T ss_pred HHHHHH
Confidence 333333
No 252
>PF11570 E2R135: Coiled-coil receptor-binding R-domain of colicin E2; InterPro: IPR024566 Bacteriocins are protein antibiotics that kill bacteria closely related to the producing species. Colicins are a subgroup of bacteriocins that are produced by and target Escherichia coli. The lethal action of most colicins is exerted either by formation of a pore in the cytoplasmic membrane of the target cell, or by an enzymatic nuclease digestion mechanism. Most colicins are able to translocate the outer membrane by a two-receptor system, where one receptor is used for the initial binding and the second for translocation. The initial binding is to cell surface receptors such as the porins OmpF, FepA, BtuB, Cir and FhuA. The presence of specific periplasmic proteins, such as TolA, TolB, TolC, or TonB, are required for translocation across the membrane []. Colicins are composed of domains with distinct functional roles. In general they contain a central R (receptor) domain that mediates receptor binding, an N-terminal T (translocation) domain that mediates translocation of the protein from the outer membrane receptor to the colicin's target within the cell, and a C-terminal C (catalytic) domain that performs the catalytic cleavage []. This entry represents the central R domain found in colicin-E2 and other colicins.; PDB: 2YSU_B 1UJW_B 2B5U_C 1JCH_A.
Probab=31.83 E-value=2.6e+02 Score=22.21 Aligned_cols=86 Identities=19% Similarity=0.203 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhchhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCChHhHHHHHHHHHHH
Q 042996 8 DDLAEINGQITDIFRALSNGFQKLEKIKDVNRQSRQLEELTDKMRECKRLIKEFDREVKDIEGRNDPETNKMLSEKKQSM 87 (261)
Q Consensus 8 ~~l~~~e~~~~~i~~~i~~~~~~L~~~~~~~~r~~~i~~i~~~l~ea~~ll~qme~Ev~~~~~s~~~~~r~~~~~~~~~~ 87 (261)
.+|...+.+|..+-..+.+...-| ..|...+......+.+++ +++++.-.+ ..+.+.-..+..++++.
T Consensus 15 aeL~~a~~~I~~~q~r~a~a~~~~------~~r~seldqA~~~~~eae--~k~~~~~a~----~P~~~~~~~wqlkvr~a 82 (136)
T PF11570_consen 15 AELDQADEDIATLQERQASAEQAL------NGRRSELDQANKKVKEAE--IKQDEFFAN----NPPHEYGRGWQLKVRRA 82 (136)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHH--HHHCCCCTT-----TTSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------hhHHHHHHHHHHHHHHHH--hcccccccC----CCccccccHHHHHHHHH
Confidence 456666666666554444443332 234445555555554422 222222221 11223334567899999
Q ss_pred HHHHHHHHHHHHHHhhhh
Q 042996 88 VKELNSYVALKKQHQTNL 105 (261)
Q Consensus 88 ~~~l~~~~~~~k~~~~~~ 105 (261)
..++++-+..+++.+...
T Consensus 83 ~~dv~nkq~~l~AA~~~l 100 (136)
T PF11570_consen 83 QKDVQNKQNKLKAAQKEL 100 (136)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999998777777665543
No 253
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=31.80 E-value=38 Score=30.55 Aligned_cols=21 Identities=29% Similarity=0.452 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHhhccCCCC
Q 042996 219 FLIVIGVIAIIIVKLVNPNNK 239 (261)
Q Consensus 219 ill~i~Ii~vi~~k~~~~~~~ 239 (261)
++|++++|+||.|-|+.++.|
T Consensus 267 vllil~vvliiLYiWlyrrRK 287 (295)
T TIGR01478 267 VLIILTVVLIILYIWLYRRRK 287 (295)
T ss_pred HHHHHHHHHHHHHHHHHHhhc
Confidence 346777778999999888665
No 254
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=31.65 E-value=5e+02 Score=25.39 Aligned_cols=14 Identities=7% Similarity=-0.178 Sum_probs=5.6
Q ss_pred hHHHHHHHHHHHHH
Q 042996 158 VVHETINVGTETAA 171 (261)
Q Consensus 158 ~~~ete~ig~~il~ 171 (261)
.+-+++-.+.++.+
T Consensus 397 ~V~~~~leaq~~~~ 410 (622)
T COG5185 397 SVKSRKLEAQGIFK 410 (622)
T ss_pred HHHhHHHHHHHHHH
Confidence 33344444444433
No 255
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=31.39 E-value=7.2e+02 Score=27.08 Aligned_cols=44 Identities=16% Similarity=0.225 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042996 164 NVGTETAAVLKAQTEQMSRIVNELDSIHFSIKKASQLVKEIGRQ 207 (261)
Q Consensus 164 ~ig~~il~~L~~Qre~l~~~~~~l~~i~~~L~~s~~~l~~m~rr 207 (261)
++-.+..+.|..|.+.+..+..+-..+.+.+.+.....+.+.-+
T Consensus 265 ~~N~~Ls~~L~~~t~~~n~l~~~~~~~~~~l~~~~q~~~~i~eQ 308 (1109)
T PRK10929 265 KINRELSQALNQQAQRMDLIASQQRQAASQTLQVRQALNTLREQ 308 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555667788888888888887777777777777777766544
No 256
>PF11346 DUF3149: Protein of unknown function (DUF3149); InterPro: IPR021494 This bacterial family of proteins has no known function.
Probab=31.24 E-value=65 Score=20.38 Aligned_cols=16 Identities=19% Similarity=0.324 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHhhccC
Q 042996 221 IVIGVIAIIIVKLVNP 236 (261)
Q Consensus 221 l~i~Ii~vi~~k~~~~ 236 (261)
.+++++.+.++.|.++
T Consensus 21 ~~igm~~~~~~~F~~k 36 (42)
T PF11346_consen 21 FTIGMGVFFIRYFIRK 36 (42)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4555555555555544
No 257
>PF06013 WXG100: Proteins of 100 residues with WXG; InterPro: IPR010310 ESAT-6 is a small protein appears to be of fundamental importance in virulence and protective immunity in Mycobacterium tuberculosis. Homologues have been detected in other Gram-positive bacterial species. It may represent a novel secretion system potentially driven by the PF01580 from PFAM domains in the YukA-like proteins []. Members of this protein family include secretion targets for type main variants of type VII secretion systems (T7SS), one found in the Actinobacteria, one found in the Firmicutes. This model was derived through iteration from PF06013 from PFAM. The best characterised member of this family is ESAT-6 from Mycobacterium tuberculosis. Members of this family usually are ~100 amino acids in length but occasionally have long C-terminal extension. ; PDB: 3FAV_A 1WA8_A 3Q4H_B 2KG7_A 2VRZ_B 2VS0_B 3OGI_A 3H6P_B 3GVM_B 3GWK_C ....
Probab=31.22 E-value=1.7e+02 Score=19.81 Aligned_cols=24 Identities=13% Similarity=0.299 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhch
Q 042996 8 DDLAEINGQITDIFRALSNGFQKL 31 (261)
Q Consensus 8 ~~l~~~e~~~~~i~~~i~~~~~~L 31 (261)
..|.....+++.++..|...+..|
T Consensus 14 ~~~~~~~~~l~~~~~~l~~~~~~l 37 (86)
T PF06013_consen 14 QQLQAQADELQSQLQQLESSIDSL 37 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444
No 258
>PTZ00046 rifin; Provisional
Probab=31.20 E-value=54 Score=30.59 Aligned_cols=7 Identities=14% Similarity=0.467 Sum_probs=2.7
Q ss_pred HHHHHhh
Q 042996 227 AIIIVKL 233 (261)
Q Consensus 227 ~vi~~k~ 233 (261)
+|+++++
T Consensus 334 IYLILRY 340 (358)
T PTZ00046 334 IYLILRY 340 (358)
T ss_pred HHHHHHh
Confidence 3333433
No 259
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=31.13 E-value=7e+02 Score=26.87 Aligned_cols=26 Identities=15% Similarity=0.221 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhchhh
Q 042996 8 DDLAEINGQITDIFRALSNGFQKLEK 33 (261)
Q Consensus 8 ~~l~~~e~~~~~i~~~i~~~~~~L~~ 33 (261)
..|..+++++.-.+.++.-+..+++.
T Consensus 708 ~kf~~l~~ql~l~~~~l~l~~~r~~~ 733 (1174)
T KOG0933|consen 708 QKFRDLKQQLELKLHELALLEKRLEQ 733 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34555555555555555555555443
No 260
>PF05399 EVI2A: Ectropic viral integration site 2A protein (EVI2A); InterPro: IPR008608 This family contains several mammalian ectropic viral integration site 2A (EVI2A) proteins. The function of this protein is unknown although it is thought to be a membrane protein and may function as an oncogene in retrovirus induced myeloid tumours [, ].; GO: 0016021 integral to membrane
Probab=30.91 E-value=55 Score=28.21 Aligned_cols=14 Identities=36% Similarity=0.484 Sum_probs=8.2
Q ss_pred CCCccCCCCCCCCc
Q 042996 237 NNKDIRDIPGLAPP 250 (261)
Q Consensus 237 ~~~~~~~~~~~~~~ 250 (261)
+|+||=---|+=|+
T Consensus 174 SNGDFLASSgLWPa 187 (227)
T PF05399_consen 174 SNGDFLASSGLWPA 187 (227)
T ss_pred cccceeeccccCcc
Confidence 46777655555555
No 261
>PRK15058 cytochrome b562; Provisional
Probab=30.85 E-value=2.2e+02 Score=22.58 Aligned_cols=24 Identities=4% Similarity=0.178 Sum_probs=15.9
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhc
Q 042996 7 SDDLAEINGQITDIFRALSNGFQK 30 (261)
Q Consensus 7 s~~l~~~e~~~~~i~~~i~~~~~~ 30 (261)
|.+|.+|.+-+..++.+|.....-
T Consensus 77 s~e~K~Y~~G~d~Li~qID~a~~l 100 (128)
T PRK15058 77 SPEMKDFRHGFDILVGQIDGALKL 100 (128)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777777777777666655433
No 262
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=30.76 E-value=2.6e+02 Score=21.81 Aligned_cols=8 Identities=13% Similarity=0.335 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 042996 12 EINGQITD 19 (261)
Q Consensus 12 ~~e~~~~~ 19 (261)
.|+.++..
T Consensus 21 ~~~~~~~~ 28 (132)
T PF07926_consen 21 DAEEQLQS 28 (132)
T ss_pred HHHHHHHH
Confidence 33333333
No 263
>PTZ00370 STEVOR; Provisional
Probab=30.69 E-value=41 Score=30.39 Aligned_cols=21 Identities=24% Similarity=0.458 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHhhccCCCC
Q 042996 219 FLIVIGVIAIIIVKLVNPNNK 239 (261)
Q Consensus 219 ill~i~Ii~vi~~k~~~~~~~ 239 (261)
++|++++|+||.|-|+.++.|
T Consensus 263 vllil~vvliilYiwlyrrRK 283 (296)
T PTZ00370 263 VLLILAVVLIILYIWLYRRRK 283 (296)
T ss_pred HHHHHHHHHHHHHHHHHHhhc
Confidence 346777778999989887665
No 264
>PRK06654 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=30.65 E-value=75 Score=26.74 Aligned_cols=39 Identities=13% Similarity=0.121 Sum_probs=25.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhccCCCCccCCCCCCCCc
Q 042996 212 KCIMAMLFLIVIGVIAIIIVKLVNPNNKDIRDIPGLAPP 250 (261)
Q Consensus 212 K~i~~~iill~i~Ii~vi~~k~~~~~~~~~~~~~~~~~~ 250 (261)
|++-|++|+++.+|+++.++.|+.+...+-.|-|+.-|+
T Consensus 32 k~l~~~~i~~~a~i~i~~v~~~~~~~~~~~~g~~~~~~~ 70 (181)
T PRK06654 32 KILQWVAIGLFAVIFIVTVVYFVSKMVVSQSGAPNAFPV 70 (181)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhhhcccCCCCCCCC
Confidence 566677776666666666667888776666666655444
No 265
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=30.46 E-value=8.9e+02 Score=27.89 Aligned_cols=67 Identities=12% Similarity=0.240 Sum_probs=50.7
Q ss_pred hhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042996 141 GNRMMDETDQAIERSKQVVHETINVGTETAAVLKAQTEQMSRIVNELDSIHFSIKKASQLVKEIGRQ 207 (261)
Q Consensus 141 ~~~~l~~~~~~L~~s~~~~~ete~ig~~il~~L~~Qre~l~~~~~~l~~i~~~L~~s~~~l~~m~rr 207 (261)
..+.+....-.+.+....+....+.-......|..||.-+.++...+..+...+..++.-+..+.+.
T Consensus 396 ~qqqle~~~lele~~~~~l~s~~eev~~~~p~lk~qr~~~e~~~~~~~~l~~el~~~~q~~~~~e~~ 462 (1822)
T KOG4674|consen 396 LQQQLESLKLELERLQNILSSFKEEVKQKAPILKEQRSELERMQETKAELSEELDFSNQKIQKLEKE 462 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555666677777777777777777777889999999999999888888888888777776655
No 266
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=30.44 E-value=56 Score=30.42 Aligned_cols=27 Identities=22% Similarity=0.424 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCC
Q 042996 213 CIMAMLFLIVIGVIAIIIVKLVNPNNK 239 (261)
Q Consensus 213 ~i~~~iill~i~Ii~vi~~k~~~~~~~ 239 (261)
++.-+|.+++|+.|.||+|-++|=+.|
T Consensus 312 IiaSiIAIvvIVLIMvIIYLILRYRRK 338 (353)
T TIGR01477 312 IIASIIAILIIVLIMVIIYLILRYRRK 338 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 444444557777789999999988644
No 267
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=30.42 E-value=7.2e+02 Score=26.79 Aligned_cols=47 Identities=13% Similarity=0.063 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh-hhhhhhcCCCCCCCCc
Q 042996 77 NKMLSEKKQSMVKELNSYVALKKQHQTNLEN-NKRVDLFDGPNEGFAE 123 (261)
Q Consensus 77 r~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~-~~R~~L~~~~~~~~~~ 123 (261)
+.++...+..|.++-+.......++.....| ..-..+||..++.|+.
T Consensus 908 ~kkle~e~~~~~~e~~~~~k~v~~l~~k~~wi~~ek~~fgk~gt~yDf 955 (1174)
T KOG0933|consen 908 RKKLEHEVTKLESEKANARKEVEKLLKKHEWIGDEKRLFGKKGTDYDF 955 (1174)
T ss_pred HHHHHhHHHHhhhhHHHHHHHHHHHHHhccchhHHHHhhcCCCCcccc
Confidence 4455566666665555555444444444334 3345789887665553
No 268
>KOG2374 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.36 E-value=2e+02 Score=28.25 Aligned_cols=43 Identities=5% Similarity=0.067 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhhhHHHHHHH
Q 042996 177 TEQMSRIVNELDSIHFSIKKASQL-VKEIGRQVATDKCIMAMLF 219 (261)
Q Consensus 177 re~l~~~~~~l~~i~~~L~~s~~~-l~~m~rr~~~dK~i~~~ii 219 (261)
-..++.+...+...+..+.+|-++ |-.|.+..+..+++.+.||
T Consensus 25 p~~~k~lkkiv~~sdee~~~~~~~L~~~~~~~h~~vR~l~lqii 68 (661)
T KOG2374|consen 25 PRLLKALKKIVRYSDEEVRLSSQTLMELMRHNHSQVRYLTLQII 68 (661)
T ss_pred hHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcCchHHHHHHHHH
Confidence 456777788888888888888874 5678888899888777665
No 269
>PF06459 RR_TM4-6: Ryanodine Receptor TM 4-6; InterPro: IPR009460 The release of Ca2+ ions from intracellular stores is a key step in a wide variety of cellular functions. In striated muscle, the release of Ca2+ from the sarcoplasmic reticulum (SR) leads to muscle contraction. Ca2+ release occurs through large, high-conductance Ca2+ release channels, also known as ryanodine receptors (RyRs) because they bind the plant alkaloid ryanodine with high affinity and specificity []. This region covers TM regions 4-6 of the ryanodine receptor 1 family.; GO: 0005219 ryanodine-sensitive calcium-release channel activity, 0006874 cellular calcium ion homeostasis, 0016021 integral to membrane
Probab=30.29 E-value=1.6e+02 Score=26.39 Aligned_cols=38 Identities=8% Similarity=0.159 Sum_probs=25.9
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhccCC
Q 042996 198 SQLVKEIGRQVATDKCIMAMLFLIVIGVIAIIIVKLVNPN 237 (261)
Q Consensus 198 ~~~l~~m~rr~~~dK~i~~~iill~i~Ii~vi~~k~~~~~ 237 (261)
.++|+.++|+-++=|++..++ -|+...+.++||+..-.
T Consensus 160 ~k~lnylARNFYNlr~lALfl--AFaINFILLFYKVs~~~ 197 (274)
T PF06459_consen 160 TKFLNYLARNFYNLRFLALFL--AFAINFILLFYKVSTSP 197 (274)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhccCC
Confidence 468899999988877665444 24445567778876643
No 270
>PF06092 DUF943: Enterobacterial putative membrane protein (DUF943); InterPro: IPR010351 This family consists of several hypothetical proteins from Escherichia coli, Yersinia pestis and Salmonella typhi.
Probab=30.19 E-value=47 Score=27.31 Aligned_cols=16 Identities=13% Similarity=0.328 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHhhccC
Q 042996 221 IVIGVIAIIIVKLVNP 236 (261)
Q Consensus 221 l~i~Ii~vi~~k~~~~ 236 (261)
++++++++++|.+++|
T Consensus 13 ~l~~~~~y~~W~~~rp 28 (157)
T PF06092_consen 13 FLLACILYFLWLTLRP 28 (157)
T ss_pred HHHHHHHHhhhhccCC
Confidence 3344444677766776
No 271
>PF15168 TRIQK: Triple QxxK/R motif-containing protein family
Probab=30.17 E-value=88 Score=22.44 Aligned_cols=23 Identities=13% Similarity=0.437 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcc
Q 042996 213 CIMAMLFLIVIGVIAIIIVKLVN 235 (261)
Q Consensus 213 ~i~~~iill~i~Ii~vi~~k~~~ 235 (261)
+++.+|+.+++++..+.|+.|.+
T Consensus 53 l~l~ail~lL~a~Ya~fyl~ls~ 75 (79)
T PF15168_consen 53 LVLAAILVLLLAFYAFFYLNLSK 75 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcc
Confidence 34444444666666666666654
No 272
>KOG3251 consensus Golgi SNAP receptor complex member [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.16 E-value=3.6e+02 Score=23.28 Aligned_cols=23 Identities=9% Similarity=0.118 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 042996 167 TETAAVLKAQTEQMSRIVNELDS 189 (261)
Q Consensus 167 ~~il~~L~~Qre~l~~~~~~l~~ 189 (261)
.+++..|.=.+.+|.-|..++..
T Consensus 167 ~~~~ntLGlSn~ti~lIeRR~~~ 189 (213)
T KOG3251|consen 167 LDILNTLGLSNQTIRLIERRVRE 189 (213)
T ss_pred HHHHHhcCCcHHHHHHHHHHHHh
Confidence 34445555555555555555544
No 273
>PRK12704 phosphodiesterase; Provisional
Probab=30.15 E-value=3.2e+02 Score=26.85 Aligned_cols=51 Identities=16% Similarity=0.343 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHhhhhchhhhcchhHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q 042996 15 GQITDIFRALSNGFQKLEKIKDVNRQSRQLEELTDKM-RECKRLIKEFDREV 65 (261)
Q Consensus 15 ~~~~~i~~~i~~~~~~L~~~~~~~~r~~~i~~i~~~l-~ea~~ll~qme~Ev 65 (261)
.++..+..+....+.++..+...+-|...+..++..+ .++-.++++++.+.
T Consensus 131 ~~~~~~~~~~~~~l~~~a~lt~~ea~~~l~~~~~~~~~~~~~~~~~~~~~~~ 182 (520)
T PRK12704 131 EELEELIEEQLQELERISGLTAEEAKEILLEKVEEEARHEAAVLIKEIEEEA 182 (520)
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333334444444443 34444444444443
No 274
>PRK14584 hmsS hemin storage system protein; Provisional
Probab=30.11 E-value=65 Score=26.35 Aligned_cols=28 Identities=14% Similarity=0.090 Sum_probs=21.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhccCC
Q 042996 210 TDKCIMAMLFLIVIGVIAIIIVKLVNPN 237 (261)
Q Consensus 210 ~dK~i~~~iill~i~Ii~vi~~k~~~~~ 237 (261)
.+.+.+|+.++++-|+++++|.|+-+.+
T Consensus 60 ~~tl~~yl~ial~nAvlLI~WA~YN~~R 87 (153)
T PRK14584 60 LTTIALYLAIAAFNAVLLIIWAKYNQVR 87 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446778888888888999998885543
No 275
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=29.97 E-value=3.8e+02 Score=23.39 Aligned_cols=24 Identities=17% Similarity=0.405 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 042996 42 RQLEELTDKMRECKRLIKEFDREV 65 (261)
Q Consensus 42 ~~i~~i~~~l~ea~~ll~qme~Ev 65 (261)
..++.|...|...+..|++.+.|-
T Consensus 53 eeLrqI~~DIn~lE~iIkqa~~er 76 (230)
T PF10146_consen 53 EELRQINQDINTLENIIKQAESER 76 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555777777777777777664
No 276
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=29.91 E-value=2.3e+02 Score=20.83 Aligned_cols=57 Identities=12% Similarity=0.269 Sum_probs=33.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhchhhhc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042996 6 ISDDLAEINGQITDIFRALSNGFQKLEKIK-DVNRQSRQLEELTDKMRECKRLIKEFDREVK 66 (261)
Q Consensus 6 ~s~~l~~~e~~~~~i~~~i~~~~~~L~~~~-~~~~r~~~i~~i~~~l~ea~~ll~qme~Ev~ 66 (261)
...+|+..|+.+..-...++..-.+|.+-. .++.|... +..+.++...++.+|.++.
T Consensus 3 V~~eId~lEekl~~cr~~le~ve~rL~~~eLs~e~R~~l----E~E~~~l~~~l~~~E~eL~ 60 (85)
T PF15188_consen 3 VAKEIDGLEEKLAQCRRRLEAVESRLRRRELSPEARRSL----EKELNELKEKLENNEKELK 60 (85)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHcccCCChHHHHHH----HHHHHHHHHHhhccHHHHH
Confidence 456788888888888888877777776632 33444332 2344444444444455543
No 277
>PF05399 EVI2A: Ectropic viral integration site 2A protein (EVI2A); InterPro: IPR008608 This family contains several mammalian ectropic viral integration site 2A (EVI2A) proteins. The function of this protein is unknown although it is thought to be a membrane protein and may function as an oncogene in retrovirus induced myeloid tumours [, ].; GO: 0016021 integral to membrane
Probab=29.66 E-value=54 Score=28.28 Aligned_cols=7 Identities=14% Similarity=0.154 Sum_probs=2.7
Q ss_pred HHhhhhh
Q 042996 206 RQVATDK 212 (261)
Q Consensus 206 rr~~~dK 212 (261)
+-.-.+|
T Consensus 121 CEen~~K 127 (227)
T PF05399_consen 121 CEENNNK 127 (227)
T ss_pred hhcCccc
Confidence 3333344
No 278
>PF05055 DUF677: Protein of unknown function (DUF677); InterPro: IPR007749 This entry contains proteins belonging to the UPF0496 family, found in plants. This family includes AT14A like proteins from Arabidopsis thaliana. At14a contains a small domain that has sequence similarities to integrins from fungi, insects and humans. Transcripts of At14a are found in all Arabidopsis tissues and the protein localises partly to the plasma membrane [].
Probab=29.65 E-value=2.3e+02 Score=26.23 Aligned_cols=8 Identities=25% Similarity=0.717 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 042996 44 LEELTDKM 51 (261)
Q Consensus 44 i~~i~~~l 51 (261)
+..+...+
T Consensus 266 V~RL~deI 273 (336)
T PF05055_consen 266 VDRLEDEI 273 (336)
T ss_pred HHHHHHHH
Confidence 33333333
No 279
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=29.63 E-value=3.1e+02 Score=22.26 Aligned_cols=58 Identities=16% Similarity=0.326 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCChHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042996 41 SRQLEELTDKMRECKRLIKEFDREVKDIEGRNDPETNKMLSEKKQSMVKELNSYVALKKQH 101 (261)
Q Consensus 41 ~~~i~~i~~~l~ea~~ll~qme~Ev~~~~~s~~~~~r~~~~~~~~~~~~~l~~~~~~~k~~ 101 (261)
...+.+++..+.+.+.-++.++.|+..+... |.. ..+...+..+..++..+...+..+
T Consensus 78 d~ei~~L~~el~~l~~~~k~l~~eL~~L~~~-~t~--~el~~~i~~l~~e~~~l~~kL~~l 135 (169)
T PF07106_consen 78 DAEIKELREELAELKKEVKSLEAELASLSSE-PTN--EELREEIEELEEEIEELEEKLEKL 135 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3557888888888888888899998887543 332 245666666666666655444433
No 280
>PF15468 DUF4636: Domain of unknown function (DUF4636)
Probab=29.46 E-value=94 Score=26.91 Aligned_cols=21 Identities=5% Similarity=0.067 Sum_probs=10.3
Q ss_pred HHhhhhhHHHHHHHHHHHHHH
Q 042996 206 RQVATDKCIMAMLFLIVIGVI 226 (261)
Q Consensus 206 rr~~~dK~i~~~iill~i~Ii 226 (261)
+++...-++-||+|++|+.++
T Consensus 35 c~~iG~fLlWyfviilvLm~~ 55 (243)
T PF15468_consen 35 CGAIGSFLLWYFVIILVLMFF 55 (243)
T ss_pred cchhhhHHHHHHHHHHHHHHH
Confidence 345555455555555443333
No 281
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=29.41 E-value=3.2e+02 Score=22.41 Aligned_cols=22 Identities=23% Similarity=0.508 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 042996 43 QLEELTDKMRECKRLIKEFDRE 64 (261)
Q Consensus 43 ~i~~i~~~l~ea~~ll~qme~E 64 (261)
.+..++..|.+++..+..+...
T Consensus 146 ki~~l~~~i~~~e~~~~~~~~~ 167 (218)
T cd07596 146 KVEELEEELEEAESALEEARKR 167 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444433
No 282
>PF14899 DUF4492: Domain of unknown function (DUF4492)
Probab=29.39 E-value=79 Score=21.93 Aligned_cols=24 Identities=17% Similarity=0.336 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCC
Q 042996 214 IMAMLFLIVIGVIAIIIVKLVNPN 237 (261)
Q Consensus 214 i~~~iill~i~Ii~vi~~k~~~~~ 237 (261)
.+|.||++=+.|+++|.--|+.|+
T Consensus 20 tLW~IIliKLfImF~vLK~FfFp~ 43 (64)
T PF14899_consen 20 TLWLIILIKLFIMFAVLKLFFFPN 43 (64)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCcc
Confidence 456666655666666655556665
No 283
>PF11812 DUF3333: Domain of unknown function (DUF3333); InterPro: IPR024573 This N-terminal domain is functionally uncharacterised and it is found in proteins annotated as putative phosphate ABC transporter permease proteins. This presumed domain is typically between 116 to 159 amino acids in length.
Probab=29.36 E-value=1.1e+02 Score=25.05 Aligned_cols=34 Identities=18% Similarity=0.344 Sum_probs=18.0
Q ss_pred HHHHHhhhhhHHHH-HHHHHHHH--HHHHHHHhhccC
Q 042996 203 EIGRQVATDKCIMA-MLFLIVIG--VIAIIIVKLVNP 236 (261)
Q Consensus 203 ~m~rr~~~dK~i~~-~iill~i~--Ii~vi~~k~~~~ 236 (261)
.+.||-..+|.+-+ ++..|+++ +++++++.++.+
T Consensus 4 ~lkkR~~~e~rFr~~g~~Ai~~~l~fL~~ll~sI~~~ 40 (155)
T PF11812_consen 4 RLKKRYRAERRFRAYGLAAIAIALAFLVILLFSIVSK 40 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35567666766543 33334443 345555666655
No 284
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=29.24 E-value=4.5e+02 Score=24.02 Aligned_cols=26 Identities=27% Similarity=0.293 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042996 42 RQLEELTDKMRECKRLIKEFDREVKD 67 (261)
Q Consensus 42 ~~i~~i~~~l~ea~~ll~qme~Ev~~ 67 (261)
-.++++...|++-+.+++++|-++..
T Consensus 70 ~sC~EL~~~I~egr~~~~~~E~et~~ 95 (312)
T smart00787 70 FSCKELKKYISEGRDLFKEIEEETLI 95 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 56888999999999999999999863
No 285
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=29.19 E-value=3.5e+02 Score=22.82 Aligned_cols=64 Identities=8% Similarity=0.161 Sum_probs=54.7
Q ss_pred hhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042996 141 GNRMMDETDQAIERSKQVVHETINVGTETAAVLKAQTEQMSRIVNELDSIHFSIKKASQLVKEI 204 (261)
Q Consensus 141 ~~~~l~~~~~~L~~s~~~~~ete~ig~~il~~L~~Qre~l~~~~~~l~~i~~~L~~s~~~l~~m 204 (261)
....+..-+..|..+...+..++.+....-.+|..++..|...+.+++.+...|..++.-+..-
T Consensus 107 A~~q~~~L~~~l~~a~~nl~~a~~~a~~AQ~el~eK~qLLeaAk~Rve~L~~QL~~Ar~D~~~t 170 (188)
T PF05335_consen 107 AQQQLETLKAALKAAQANLANAEQVAEGAQQELAEKTQLLEAAKRRVEELQRQLQAARADYEKT 170 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666777888888888899999999999999999999999999999999999998766554
No 286
>PHA02844 putative transmembrane protein; Provisional
Probab=29.15 E-value=85 Score=22.40 Aligned_cols=23 Identities=9% Similarity=0.161 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcc
Q 042996 213 CIMAMLFLIVIGVIAIIIVKLVN 235 (261)
Q Consensus 213 ~i~~~iill~i~Ii~vi~~k~~~ 235 (261)
|..++++++++++++++.+-++|
T Consensus 48 ~~~~ii~i~~v~~~~~~~flYLK 70 (75)
T PHA02844 48 TKIWILTIIFVVFATFLTFLYLK 70 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444444455555555555554
No 287
>PF14235 DUF4337: Domain of unknown function (DUF4337)
Probab=28.96 E-value=3.2e+02 Score=22.31 Aligned_cols=28 Identities=14% Similarity=0.141 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 042996 77 NKMLSEKKQSMVKELNSYVALKKQHQTN 104 (261)
Q Consensus 77 r~~~~~~~~~~~~~l~~~~~~~k~~~~~ 104 (261)
+..+..++..|+.+.+.++.+.++++..
T Consensus 68 ~~~~~~~i~~Y~~~~~~~~~e~~~l~~~ 95 (157)
T PF14235_consen 68 RAAYQKKIARYKKEKARYKSEAEELEAK 95 (157)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678888888888888888776666543
No 288
>PF03597 CcoS: Cytochrome oxidase maturation protein cbb3-type; InterPro: IPR004714 Cytochrome cbb3 oxidases are found almost exclusively in Proteobacteria, and represent a distinctive class of proton-pumping respiratory haem-copper oxidases (HCO) that lack many of the key structural features that contribute to the reaction cycle of the intensely studied mitochondrial cytochrome c oxidase (CcO). Expression of cytochrome cbb3 oxidase allows human pathogens to colonise anoxic tissues and agronomically important diazotrophs to sustain nitrogen fixation []. Genes encoding a cytochrome cbb3 oxidase were initially designated fixNOQP (ccoNOQP), the ccoNOQP operon is always found close to a second gene cluster, known as fixGHIS (ccoGHIS) whose expression is necessary for the assembly of a functional cbb3 oxidase. On the basis of their derived amino acid sequences each of the four proteins encoded by the ccoGHIS operon are thought to be membrane-bound. It has been suggested that they may function in concert as a multi-subunit complex, possibly playing a role in the uptake and metabolism of copper required for the assembly of the binuclear centre of cytochrome cbb3 oxidase.
Probab=28.95 E-value=1.4e+02 Score=19.09 Aligned_cols=9 Identities=11% Similarity=0.342 Sum_probs=4.5
Q ss_pred CCCccCCCC
Q 042996 237 NNKDIRDIP 245 (261)
Q Consensus 237 ~~~~~~~~~ 245 (261)
+++-+-|.-
T Consensus 26 k~GQfdD~e 34 (45)
T PF03597_consen 26 KSGQFDDLE 34 (45)
T ss_pred ccCCCCCCc
Confidence 355555543
No 289
>COG3088 CcmH Uncharacterized protein involved in biosynthesis of c-type cytochromes [Posttranslational modification, protein turnover, chaperones]
Probab=28.92 E-value=65 Score=26.25 Aligned_cols=27 Identities=7% Similarity=0.130 Sum_probs=15.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhccCCC
Q 042996 212 KCIMAMLFLIVIGVIAIIIVKLVNPNN 238 (261)
Q Consensus 212 K~i~~~iill~i~Ii~vi~~k~~~~~~ 238 (261)
-+++|+.=++++++.+++++.+.++..
T Consensus 105 T~lLW~~Pv~llllG~~~~~~~~rrr~ 131 (153)
T COG3088 105 TLLLWGLPVVLLLLGGVLLVRRARRRV 131 (153)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHhhhh
Confidence 378888655444444555555555543
No 290
>PF15050 SCIMP: SCIMP protein
Probab=28.89 E-value=73 Score=24.99 Aligned_cols=14 Identities=21% Similarity=0.532 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHhhc
Q 042996 221 IVIGVIAIIIVKLV 234 (261)
Q Consensus 221 l~i~Ii~vi~~k~~ 234 (261)
+++++|+|-+.++.
T Consensus 21 ~~lglIlyCvcR~~ 34 (133)
T PF15050_consen 21 VVLGLILYCVCRWQ 34 (133)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444445543
No 291
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.81 E-value=57 Score=23.03 Aligned_cols=10 Identities=20% Similarity=0.112 Sum_probs=5.7
Q ss_pred HHHHHhhccC
Q 042996 227 AIIIVKLVNP 236 (261)
Q Consensus 227 ~vi~~k~~~~ 236 (261)
++|..|.+++
T Consensus 22 ~fiark~~~k 31 (71)
T COG3763 22 FFIARKQMKK 31 (71)
T ss_pred HHHHHHHHHH
Confidence 5666666544
No 292
>PF12729 4HB_MCP_1: Four helix bundle sensory module for signal transduction; InterPro: IPR024478 This entry represents a four-helix bundle that operates as a ubiquitous sensory module in prokaryotic signal-transduction, which is known as four-helix bundles methyl-accepting chemotaxis protein (4HB_MCP) domain. The 4HB_MCP is always found between two predicted transmembrane helices indicating that it detects only extracellular signals. In many cases the domain is associated with a cytoplasmic HAMP domain suggesting that most proteins carrying the bundle might share the mechanism of transmembrane signalling which is well-characterised in E coli chemoreceptors [].
Probab=28.71 E-value=2.7e+02 Score=21.42 Aligned_cols=29 Identities=14% Similarity=0.308 Sum_probs=21.6
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042996 36 DVNRQSRQLEELTDKMRECKRLIKEFDRE 64 (261)
Q Consensus 36 ~~~~r~~~i~~i~~~l~ea~~ll~qme~E 64 (261)
+++++.....+++.....+++.++.++--
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (181)
T PF12729_consen 73 DPEERQEIEKEIDEARAEIDEALEEYEKL 101 (181)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45667777777888888888887777654
No 293
>PF05781 MRVI1: MRVI1 protein; InterPro: IPR008677 This family consists of mammalian MRVI1 proteins which are related to the lymphoid-restricted membrane protein (JAW1) and the IP3 receptor associated cGMP kinase substrates A and B (IRAGA and IRAGB). The function of MRVI1 is unknown although mutations in the Mrvi1 gene induces myeloid leukaemia by altering the expression of a gene important for myeloid cell growth and/or differentiation so it has been speculated that Mrvi1 is a tumour suppressor gene []. IRAG is very similar in sequence to MRVI1 and is an essential NO/cGKI-dependent regulator of IP3-induced calcium release. Activation of cGKI decreases IP3-stimulated elevations in intracellular calcium, induces smooth muscle relaxation and contributes to the antiproliferative and pro-apoptotic effects of NO/cGMP []. Jaw1 is a member of a class of proteins with COOH-terminal hydrophobic membrane anchors and is structurally similar to proteins involved in vesicle targeting and fusion. This suggests that the function and/or the structure of the ER in lymphocytes may be modified by lymphoid-restricted resident ER proteins [].
Probab=28.68 E-value=2.2e+02 Score=28.13 Aligned_cols=22 Identities=9% Similarity=0.184 Sum_probs=11.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 042996 38 NRQSRQLEELTDKMRECKRLIK 59 (261)
Q Consensus 38 ~~r~~~i~~i~~~l~ea~~ll~ 59 (261)
.+....++.+...|.=+..+..
T Consensus 251 ~e~~e~~~kl~~~l~~l~~~~~ 272 (538)
T PF05781_consen 251 NESREIIQKLQKSLDVLHQCAT 272 (538)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666644444433
No 294
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.56 E-value=79 Score=25.12 Aligned_cols=17 Identities=35% Similarity=0.784 Sum_probs=10.7
Q ss_pred HHHHHH-HHHHHhhccCC
Q 042996 221 IVIGVI-AIIIVKLVNPN 237 (261)
Q Consensus 221 l~i~Ii-~vi~~k~~~~~ 237 (261)
+|++|+ .+++.++++++
T Consensus 15 LvvGi~IG~li~Rlt~~~ 32 (138)
T COG3105 15 LVVGIIIGALIARLTNRK 32 (138)
T ss_pred HHHHHHHHHHHHHHcchh
Confidence 444444 77778787653
No 295
>PF09716 ETRAMP: Malarial early transcribed membrane protein (ETRAMP); InterPro: IPR006389 These sequences represent a family of proteins from the malaria parasite Plasmodium falciparum, several of which have been shown to be expressed specifically in the ring stage as well as the rodent parasite Plasmodium yoelii []. A homologue from Plasmodium chabaudi was localized to the parasitophorous vacuole membrane []. Members have an initial hydrophobic, Phe/Tyr-rich stretch long enough to span the membrane, a highly charged region rich in Lys, a second putative transmembrane region, and a second highly charged, low complexity sequence region. Some members have up to 100 residues of additional C-terminal sequence. These genes have been shown to be found in the sub-telomeric regions of both Plasmodium falciparum and P. yoelii chromosomes.
Probab=28.36 E-value=1.8e+02 Score=21.05 Aligned_cols=36 Identities=8% Similarity=0.098 Sum_probs=18.6
Q ss_pred HHHHHHHHhhhhhHHHHHHHH--HHHHHHHHHHHhhcc
Q 042996 200 LVKEIGRQVATDKCIMAMLFL--IVIGVIAIIIVKLVN 235 (261)
Q Consensus 200 ~l~~m~rr~~~dK~i~~~iil--l~i~Ii~vi~~k~~~ 235 (261)
.-..+.+....+|.+++..+. +.+++...+.+.+..
T Consensus 42 ~d~~i~kK~k~kK~iiiS~i~s~lalli~~~~G~g~y~ 79 (84)
T PF09716_consen 42 IDDKIEKKKKNKKKIIISTIASGLALLIATALGYGYYK 79 (84)
T ss_pred hhHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 335666776777776665443 333443333443333
No 296
>KOG3653 consensus Transforming growth factor beta/activin receptor subfamily of serine/threonine kinases [Signal transduction mechanisms]
Probab=28.29 E-value=87 Score=30.49 Aligned_cols=28 Identities=14% Similarity=0.208 Sum_probs=10.6
Q ss_pred HHHHHHHHHHhhccCCCCccCCCCCCCC
Q 042996 222 VIGVIAIIIVKLVNPNNKDIRDIPGLAP 249 (261)
Q Consensus 222 ~i~Ii~vi~~k~~~~~~~~~~~~~~~~~ 249 (261)
+++||+.+|+-+-..++.+..+.|++-|
T Consensus 167 l~~lvi~~~~~~r~~k~~~~~~e~~~~p 194 (534)
T KOG3653|consen 167 LAALVILAFLGYRQRKNAREEIEPVLIP 194 (534)
T ss_pred HHHHHHHHHHHHHHhhcccccCccCccc
Confidence 3333333333333333444333444444
No 297
>PF10389 CoatB: Bacteriophage coat protein B ; InterPro: IPR008020 The major coat protein in the capsid of filamentous bacteriophage forms a helical assembly of about 7000 identical protomers, with each protomer comprised of 46 amino acids, after the cleavage of the signal peptide. Each protomer forms a slightly curved helix that combines to form a tubular structure that encapsulates the viral DNA [].; PDB: 2IFO_A.
Probab=28.12 E-value=65 Score=20.84 Aligned_cols=16 Identities=13% Similarity=0.293 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHhhccC
Q 042996 221 IVIGVIAIIIVKLVNP 236 (261)
Q Consensus 221 l~i~Ii~vi~~k~~~~ 236 (261)
.+..++.+-+|||.|+
T Consensus 29 vL~v~V~i~v~kwiRr 44 (46)
T PF10389_consen 29 VLGVIVGIAVYKWIRR 44 (46)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 4455557778888775
No 298
>PF13166 AAA_13: AAA domain
Probab=28.06 E-value=6.3e+02 Score=25.37 Aligned_cols=32 Identities=9% Similarity=0.251 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042996 173 LKAQTEQMSRIVNELDSIHFSIKKASQLVKEI 204 (261)
Q Consensus 173 L~~Qre~l~~~~~~l~~i~~~L~~s~~~l~~m 204 (261)
+......+......+..++...+.=+..|+.+
T Consensus 440 ~~~~~~~i~~l~~~~~~~~~~~~~iN~~L~~~ 471 (712)
T PF13166_consen 440 IKKIEKEIKELEAQLKNTEPAADRINEELKRL 471 (712)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 33344444444444444455555555555555
No 299
>PF02158 Neuregulin: Neuregulin family; InterPro: IPR002154 Neuregulins are a sub-family of EGF-like molecules that have been shown to play multiple essential roles in vertebrate embryogenesis including: cardiac development, Schwann cell and oligodendrocyte differentiation, some aspects of neuronal development, as well as the formation of neuromuscular synapses [, ]. Included in the family are heregulin; neu differentiation factor; acetylcholine receptor synthesis stimulator; glial growth factor; and sensory and motor-neuron derived factor []. Multiple family members are generated by alternate splicing or by use of several cell type-specific transcription initiation sites. In general, they bind to and activate the erbB family of receptor tyrosine kinases (erbB2 (HER2), erbB3 (HER3), and erbB4 (HER4)), functioning both as heterodimers and homodimers. The transmembrane forms of neuregulin 1 (NRG1) are present within synaptic vesicles, including those containing glutamate []. After exocytosis, NRG1 is in the presynaptic membrane, where the ectodomain of NRG1 may be cleaved off. The ectodomain then migrates across the synaptic cleft and binds to and activates a member of the EGF-receptor family on the postsynaptic membrane. This has been shown to increase the expression of certain glutamate-receptor subunits. NRG1 appears to signal for glutamate-receptor subunit expression, localisation, and /or phosphorylation facilitating subsequent glutamate transmission. The NRG1 gene has been identified as a potential gene determining susceptibility to schizophrenia by a combination of genetic linkage and association approaches []. ; GO: 0005102 receptor binding, 0009790 embryo development; PDB: 1HRE_A 1HAE_A 1HAF_A 1HRF_A.
Probab=28.06 E-value=16 Score=34.15 Aligned_cols=16 Identities=13% Similarity=0.463 Sum_probs=0.0
Q ss_pred HHHHHHHHH-HHhhccC
Q 042996 221 IVIGVIAII-IVKLVNP 236 (261)
Q Consensus 221 l~i~Ii~vi-~~k~~~~ 236 (261)
+|++|+.++ +|.-+|+
T Consensus 20 lVVGi~Cvv~aYCKTKK 36 (404)
T PF02158_consen 20 LVVGIVCVVDAYCKTKK 36 (404)
T ss_dssp -----------------
T ss_pred HHHHHHHHHHHHHHhHH
Confidence 788888776 5555554
No 300
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=28.04 E-value=3.3e+02 Score=22.11 Aligned_cols=47 Identities=17% Similarity=0.379 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHhhhhchhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042996 15 GQITDIFRALSNGFQKLEKIKDVNRQSRQLEELTDKMRECKRLIKEFDR 63 (261)
Q Consensus 15 ~~~~~i~~~i~~~~~~L~~~~~~~~r~~~i~~i~~~l~ea~~ll~qme~ 63 (261)
++|..|+.+....+..... ..+........++..|.++...|+.|.-
T Consensus 2 eqi~~Im~~~gk~i~~~K~--~~~~~~~e~~~~k~ql~~~d~~i~~Lk~ 48 (155)
T PF06810_consen 2 EQIDKIMAENGKDIEAPKA--KVDKVKEERDNLKTQLKEADKQIKDLKK 48 (155)
T ss_pred hHHHHHHHHccCcHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555555544444422111 1233345566666777777777766665
No 301
>PRK09759 small toxic polypeptide; Provisional
Probab=28.04 E-value=51 Score=21.71 Aligned_cols=20 Identities=15% Similarity=0.218 Sum_probs=10.4
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q 042996 211 DKCIMAMLFLIVIGVIAIII 230 (261)
Q Consensus 211 dK~i~~~iill~i~Ii~vi~ 230 (261)
.|.+++.++++.+.++++.+
T Consensus 3 ~k~~l~~liivCiTvL~f~~ 22 (50)
T PRK09759 3 QKYRLLSLIVICFTLLFFTW 22 (50)
T ss_pred ceeeHHHHHHHHHHHHHHHH
Confidence 45566655554555544443
No 302
>cd07912 Tweety_N N-terminal domain of the protein encoded by the Drosophila tweety gene and related proteins, a family of chloride ion channels. The protein product of the Drosophila tweety (tty) gene is thought to form a trans-membrane protein with five membrane-spanning regions and a cytoplasmic C-terminus. This N-terminal domain contains the putative transmembrane spanning regions. Tweety has been suggested as a candidate for a large conductance chloride channel, both in vertebrate and insect cells. Three human homologs have been identified and designated TTYH1-3. TTYH2 has been associated with the progression of cancer, and Drosophila melanogaster tweety has been assumed to play a role in development. TTYH2, and TTYH3 bind to and are ubiquinated by Nedd4-2, a HECT type E3 ubiquitin ligase, which most likely plays a role in controlling the cellular levels of tweety family proteins.
Probab=27.92 E-value=5.4e+02 Score=24.58 Aligned_cols=10 Identities=10% Similarity=0.109 Sum_probs=4.5
Q ss_pred hhHHHHHHHH
Q 042996 211 DKCIMAMLFL 220 (261)
Q Consensus 211 dK~i~~~iil 220 (261)
-||..+++++
T Consensus 207 ~Rw~~~l~lL 216 (418)
T cd07912 207 YRWLAYLGLL 216 (418)
T ss_pred HHHHHHHHHH
Confidence 3454444443
No 303
>PF15012 DUF4519: Domain of unknown function (DUF4519)
Probab=27.88 E-value=21 Score=24.03 Aligned_cols=11 Identities=0% Similarity=0.374 Sum_probs=5.2
Q ss_pred HHHHHHHHHHH
Q 042996 221 IVIGVIAIIIV 231 (261)
Q Consensus 221 l~i~Ii~vi~~ 231 (261)
+++.|++++|+
T Consensus 41 ~~~~Ivv~vy~ 51 (56)
T PF15012_consen 41 VFLFIVVFVYL 51 (56)
T ss_pred HHHHHhheeEE
Confidence 44444444444
No 304
>PRK12785 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=27.79 E-value=20 Score=29.55 Aligned_cols=8 Identities=0% Similarity=-0.529 Sum_probs=3.5
Q ss_pred HHHhhccC
Q 042996 229 IIVKLVNP 236 (261)
Q Consensus 229 i~~k~~~~ 236 (261)
..|.|+..
T Consensus 42 g~~f~~~~ 49 (166)
T PRK12785 42 GGFFFFFS 49 (166)
T ss_pred heEEEEEe
Confidence 33435553
No 305
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=27.69 E-value=4e+02 Score=22.98 Aligned_cols=53 Identities=15% Similarity=0.196 Sum_probs=32.2
Q ss_pred hhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042996 142 NRMMDETDQAIERSKQVVHETINVGTETAAVLKAQTEQMSRIVNELDSIHFSI 194 (261)
Q Consensus 142 ~~~l~~~~~~L~~s~~~~~ete~ig~~il~~L~~Qre~l~~~~~~l~~i~~~L 194 (261)
...+.....+...+.+.+...+..-..+=.+|...++....+...|+.+-+.|
T Consensus 182 ~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~eld~~l~el 234 (237)
T PF00261_consen 182 EEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQEELDQTLNEL 234 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555666666666666666666555566666666666666666666654443
No 306
>KOG4617 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.68 E-value=1.2e+02 Score=26.21 Aligned_cols=43 Identities=12% Similarity=0.047 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHhhcc--CCCCccCCCCCCCCchhhhccccCC
Q 042996 218 LFLIVIGVIAIIIVKLVN--PNNKDIRDIPGLAPPAMARRLLSNP 260 (261)
Q Consensus 218 iill~i~Ii~vi~~k~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (261)
|.+++++.+|++.-.+-. ++.+.++.-|-++|..++.||+.-.
T Consensus 203 i~~LlL~a~fyl~s~~~~e~~~RklI~~srlsd~ss~~~~le~s~ 247 (249)
T KOG4617|consen 203 IANLLLGAGFYLLSESSDEEPPRKLIAHSRLSDYSSDDEPLEKSK 247 (249)
T ss_pred HHHHHHHHHHHHHHHhcCCCCcceeecccccCCcccccchhhccC
Confidence 334556666655554432 4568899999999998888887654
No 307
>KOG1094 consensus Discoidin domain receptor DDR1 [Signal transduction mechanisms]
Probab=27.66 E-value=53 Score=32.98 Aligned_cols=20 Identities=35% Similarity=0.634 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 042996 214 IMAMLFLIVIGVIAIIIVKL 233 (261)
Q Consensus 214 i~~~iill~i~Ii~vi~~k~ 233 (261)
|++.||+++.+||+++.|++
T Consensus 396 ~f~~if~iva~ii~~~L~R~ 415 (807)
T KOG1094|consen 396 IFVAIFLIVALIIALMLWRW 415 (807)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34445556777776666664
No 308
>PF03310 Cauli_DNA-bind: Caulimovirus DNA-binding protein; InterPro: IPR004986 The gene III product (P15) of cauliflower mosaic virus (CaMV) is a DNA binding protein in which the DNA binding activity is located on its C-terminal part. A family of related proteins is expressed by other members of the Caulimoviridae.; GO: 0003677 DNA binding; PDB: 3F6N_A 3K4T_D.
Probab=27.47 E-value=2.3e+02 Score=22.18 Aligned_cols=14 Identities=21% Similarity=0.850 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHH
Q 042996 41 SRQLEELTDKMREC 54 (261)
Q Consensus 41 ~~~i~~i~~~l~ea 54 (261)
...|+++..+|++|
T Consensus 44 AKIIkDisdkIdkC 57 (121)
T PF03310_consen 44 AKIIKDISDKIDKC 57 (121)
T ss_dssp HHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHhc
Confidence 36677777777776
No 309
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=27.46 E-value=18 Score=27.11 Aligned_cols=16 Identities=19% Similarity=0.279 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHhhccC
Q 042996 221 IVIGVIAIIIVKLVNP 236 (261)
Q Consensus 221 l~i~Ii~vi~~k~~~~ 236 (261)
++.+++.+++|.|+.+
T Consensus 78 ~v~~lv~~l~w~f~~r 93 (96)
T PTZ00382 78 VVGGLVGFLCWWFVCR 93 (96)
T ss_pred HHHHHHHHHhheeEEe
Confidence 3334444555545543
No 310
>PF00672 HAMP: HAMP domain; InterPro: IPR003660 The HAMP linker domain (present in Histidine kinases, Adenyl cyclases, Methyl-accepting proteins and Phosphatases) is an approximately 50-amino acid alpha-helical region. It is found in bacterial sensor and chemotaxis proteins and in eukaryotic histidine kinases. The bacterial proteins are usually integral membrane proteins and part of a two-component signal transduction pathway. One or several copies of the HAMP domain can be found in association with other domains, such as the histidine kinase domain, the bacterial chemotaxis sensory transducer domain, the PAS repeat, the EAL domain, the GGDEF domain, the protein phosphatase 2C-like domain, the guanylate cyclase domain, or the response regulatory domain. It has been suggested that the HAMP domain possesses a role of regulating the phosphorylation or methylation of homodimeric receptors by transmitting the conformational changes in periplasmic ligand-binding domains to cytoplasmic signalling kinase and methyl-acceptor domains.; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0016021 integral to membrane; PDB: 3PJX_A 3PJW_A 3ZX6_B 2Y20_B 2Y0Q_D 2Y21_H 3ZRW_C 2L7H_B 2LFS_B 2L7I_B ....
Probab=27.44 E-value=83 Score=20.91 Aligned_cols=15 Identities=7% Similarity=0.246 Sum_probs=6.6
Q ss_pred HHHHHHHHHHhhccC
Q 042996 222 VIGVIAIIIVKLVNP 236 (261)
Q Consensus 222 ~i~Ii~vi~~k~~~~ 236 (261)
.+++.+++...+.+|
T Consensus 12 ~~~~~~~~~~~i~~p 26 (70)
T PF00672_consen 12 SLLLAWLLARRITRP 26 (70)
T ss_dssp HHHHHHH--HTTCCC
T ss_pred HHHHHHHHHHHHHHH
Confidence 333335555555665
No 311
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=27.38 E-value=3.1e+02 Score=21.61 Aligned_cols=35 Identities=17% Similarity=0.240 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042996 171 AVLKAQTEQMSRIVNELDSIHFSIKKASQLVKEIG 205 (261)
Q Consensus 171 ~~L~~Qre~l~~~~~~l~~i~~~L~~s~~~l~~m~ 205 (261)
..|++|.+....+.+++.++..++...+.-+..+.
T Consensus 75 ~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~ 109 (126)
T PF07889_consen 75 DKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQ 109 (126)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 34455555555555555555555555554444443
No 312
>PRK04863 mukB cell division protein MukB; Provisional
Probab=27.26 E-value=9.4e+02 Score=27.14 Aligned_cols=88 Identities=14% Similarity=0.200 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHhhhhchhhhcc------hhHHHHHHHHHHHHHHHH----------HHHHHHHHHHHhhhcCCCChH
Q 042996 12 EINGQITDIFRALSNGFQKLEKIKD------VNRQSRQLEELTDKMREC----------KRLIKEFDREVKDIEGRNDPE 75 (261)
Q Consensus 12 ~~e~~~~~i~~~i~~~~~~L~~~~~------~~~r~~~i~~i~~~l~ea----------~~ll~qme~Ev~~~~~s~~~~ 75 (261)
+-+.+....+..+...++.|.++-+ .+.-...+.+|+..+..| ...|.+++-++..+ +.++.
T Consensus 858 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~y~~~~~~~L~qLE~~l~~L--~~Dp~ 935 (1486)
T PRK04863 858 SQEQQQRSQLEQAKEGLSALNRLLPRLNLLADETLADRVEEIREQLDEAEEAKRFVQQHGNALAQLEPIVSVL--QSDPE 935 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhchhhhhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCHH
Confidence 3334444555555555555544311 111223355555555333 33566666666655 23455
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042996 76 TNKMLSEKKQSMVKELNSYVALKKQH 101 (261)
Q Consensus 76 ~r~~~~~~~~~~~~~l~~~~~~~k~~ 101 (261)
....+...+...++.+..+++..-.+
T Consensus 936 ~~e~lr~e~~~~~~~~~~~~~~~~~l 961 (1486)
T PRK04863 936 QFEQLKQDYQQAQQTQRDAKQQAFAL 961 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555566666566666555444433
No 313
>PF13396 PLDc_N: Phospholipase_D-nuclease N-terminal
Probab=27.21 E-value=55 Score=20.45 Aligned_cols=24 Identities=13% Similarity=0.310 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccC
Q 042996 213 CIMAMLFLIVIGVIAIIIVKLVNP 236 (261)
Q Consensus 213 ~i~~~iill~i~Ii~vi~~k~~~~ 236 (261)
-++|+++++++-++..+.|-++++
T Consensus 22 k~~W~~~i~~~P~iG~i~Yl~~gr 45 (46)
T PF13396_consen 22 KILWLIVILFFPIIGPILYLIFGR 45 (46)
T ss_pred hhHHHHHHHHHHHHHHhheEEEeC
Confidence 345555555666666666656655
No 314
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=27.12 E-value=3.7e+02 Score=26.17 Aligned_cols=53 Identities=9% Similarity=0.120 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCChHhHHHHHHHHHHHHHHHHHHHHHHH
Q 042996 42 RQLEELTDKMRECKRLIKEFDREVKDIEGRNDPETNKMLSEKKQSMVKELNSYVALKK 99 (261)
Q Consensus 42 ~~i~~i~~~l~ea~~ll~qme~Ev~~~~~s~~~~~r~~~~~~~~~~~~~l~~~~~~~k 99 (261)
..+.+-+.+.+++++-|..+..|+..+. ..+..++.+++.+.+++..|+...+
T Consensus 69 SALteqQ~kasELEKqLaaLrqElq~~s-----aq~~dle~KIkeLEaE~~~Lk~Ql~ 121 (475)
T PRK13729 69 HATTEMQVTAAQMQKQYEEIRRELDVLN-----KQRGDDQRRIEKLGQDNAALAEQVK 121 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh-----hhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 4455555666666666666665543221 1234566777777777777775554
No 315
>TIGR02797 exbB tonB-system energizer ExbB. This model describes ExbB proteins, part of the MotA/TolQ/ExbB protein family. The paired proteins MotA and MotB, TolQ and TolR, and ExbB and ExbD harness the proton-motive force to drive the flagellar motor, energize the Tol-Pal system, or energize TonB, respectively. Tol-Pal and TonB are both active at the outer membrane. Genomes may have many different TonB-dependent receptors, of which many of those characterized are involved in siderophore transport across the outer membrane.
Probab=27.09 E-value=72 Score=27.24 Aligned_cols=23 Identities=30% Similarity=0.232 Sum_probs=13.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHh
Q 042996 210 TDKCIMAMLFLIVIGVIAIIIVK 232 (261)
Q Consensus 210 ~dK~i~~~iill~i~Ii~vi~~k 232 (261)
--|++||.++++.+..+.+++.|
T Consensus 12 ~~k~vm~~Ll~~Si~s~aiiieR 34 (211)
T TIGR02797 12 VVKAVMIGLALASVVTWTIWIAK 34 (211)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 34678887766444444444444
No 316
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=27.06 E-value=6.3e+02 Score=25.08 Aligned_cols=10 Identities=20% Similarity=0.424 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q 042996 11 AEINGQITDI 20 (261)
Q Consensus 11 ~~~e~~~~~i 20 (261)
+.++..++..
T Consensus 167 ~~~~~~~k~~ 176 (555)
T TIGR03545 167 EEIEKSLKAM 176 (555)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 317
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=26.96 E-value=2.4e+02 Score=20.19 Aligned_cols=27 Identities=19% Similarity=0.288 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042996 169 TAAVLKAQTEQMSRIVNELDSIHFSIK 195 (261)
Q Consensus 169 il~~L~~Qre~l~~~~~~l~~i~~~L~ 195 (261)
+-+.|..|..++..+...+.++.+.|.
T Consensus 40 l~~klDa~~~~l~~l~~~V~~I~~iL~ 66 (75)
T PF05531_consen 40 LNKKLDAQSAQLTTLNTKVNEIQDILN 66 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 556788888888888888888887664
No 318
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=26.93 E-value=8.5e+02 Score=26.53 Aligned_cols=45 Identities=11% Similarity=0.186 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042996 147 ETDQAIERSKQVVHETINVGTETAAVLKAQTEQMSRIVNELDSIH 191 (261)
Q Consensus 147 ~~~~~L~~s~~~~~ete~ig~~il~~L~~Qre~l~~~~~~l~~i~ 191 (261)
+....|...++.+.+...--.++...+..+-.+....+..+.++.
T Consensus 113 ~~~~~L~~~q~~l~~~~~~~~~~~~~l~~~pq~~~~~~~~l~~i~ 157 (1109)
T PRK10929 113 QVSSQLLEKSRQAQQEQDRAREISDSLSQLPQQQTEARRQLNEIE 157 (1109)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHhhchhhHHHHHHHHHHHH
Confidence 333334444444444444444444444333333333444444444
No 319
>TIGR01006 polys_exp_MPA1 polysaccharide export protein, MPA1 family, Gram-positive type. This family contains members from Low GC Gram-positive bacteria; they are proposed to have a function in the export of complex polysaccharides.
Probab=26.92 E-value=1.2e+02 Score=25.78 Aligned_cols=29 Identities=10% Similarity=0.252 Sum_probs=12.4
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHh
Q 042996 203 EIGRQVATDKCIMAMLFLIVIGVIAIIIVK 232 (261)
Q Consensus 203 ~m~rr~~~dK~i~~~iill~i~Ii~vi~~k 232 (261)
.+.+....++|++++++ ++++.+.++|..
T Consensus 12 ~l~~~l~r~~~~ill~~-ll~~~~a~~~~~ 40 (226)
T TIGR01006 12 QLLKKLWKRKLLILIVA-LIFLIISFIYTF 40 (226)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 34444444454444433 334444444443
No 320
>COG0216 PrfA Protein chain release factor A [Translation, ribosomal structure and biogenesis]
Probab=26.88 E-value=5.3e+02 Score=24.08 Aligned_cols=96 Identities=16% Similarity=0.291 Sum_probs=48.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHhh--hhchhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCChHhHHHHHHH
Q 042996 6 ISDDLAEINGQITDIFRALSNG--FQKLEKIKDVNRQSRQLEELTDKMRECKRLIKEFDREVKDIEGRNDPETNKMLSEK 83 (261)
Q Consensus 6 ~s~~l~~~e~~~~~i~~~i~~~--~~~L~~~~~~~~r~~~i~~i~~~l~ea~~ll~qme~Ev~~~~~s~~~~~r~~~~~~ 83 (261)
|-+.|+++...+..+-..+... +..-+++.......+.+..+-....+.+...++++---..+....+++.+...+..
T Consensus 5 ~~~kl~~~~~r~~el~~~L~~p~v~~d~~~~~~lske~a~l~~iv~~~~~~~~~~~~l~~a~~~l~~~~D~em~ema~~E 84 (363)
T COG0216 5 LLEKLESLLERYEELEALLSDPEVISDPDEYRKLSKEYAELEPIVEKYREYKKAQEDLEDAKEMLAEEKDPEMREMAEEE 84 (363)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHH
Confidence 4556666666666554433332 11112222233344555555555555555544444221222222356666666777
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 042996 84 KQSMVKELNSYVALKKQH 101 (261)
Q Consensus 84 ~~~~~~~l~~~~~~~k~~ 101 (261)
+..+...+..+...++-+
T Consensus 85 i~~~~~~~~~le~~L~~l 102 (363)
T COG0216 85 IKELEAKIEELEEELKIL 102 (363)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 777777777766665544
No 321
>PF00517 GP41: Retroviral envelope protein; InterPro: IPR000328 This entry represents envelope proteins from a variety of retroviruses. It includes the GP41 subunit of the envelope protein complex from Human immunodeficiency virus (HIV) and Simian-Human immunodeficiency virus (SIV), which mediate membrane fusion during viral entry []. It has a core composed of a six-helix bundle and is folded by its trimeric N- and C-terminal heptad-repeats (NHR and CHR) []. Derivatives of this protein prevent HIV-1 from entering cell lines and primary human CD4+ cells in vitro [], making it an attractive subject of gene therapy studies against HIV and related retroviruses. The entry also represents envelop proteins from Bovine immunodeficiency virus, Feline immunodeficiency virus and Equine infectious anemia virus (EIAV) [, ], as well as the Gp36 protein from Mouse mammary tumor virus (MMTV) and Human endogenous retrovirus (HERV).; GO: 0005198 structural molecule activity, 0019031 viral envelope; PDB: 2EZO_B 2EZQ_B 2EZR_A 2JNR_B 1F23_D 2EZP_A 1JEK_A 2Q7C_A 2Q5U_A 2Q3I_A ....
Probab=26.64 E-value=4e+02 Score=22.62 Aligned_cols=36 Identities=14% Similarity=0.030 Sum_probs=18.8
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042996 154 RSKQVVHETINVGTETAAVLKAQTEQMSRIVNELDS 189 (261)
Q Consensus 154 ~s~~~~~ete~ig~~il~~L~~Qre~l~~~~~~l~~ 189 (261)
.=.+-+...++.=...+.+-..|.+.-...-.+++.
T Consensus 105 ~W~~~i~~~~~~i~~ll~~a~~qqe~n~~~l~~Ld~ 140 (204)
T PF00517_consen 105 QWEKEISNYTGNIYNLLEEAQNQQEKNEQDLLKLDS 140 (204)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHhcccHHHHHHHHHHHHhchhhhhhhhcCCcH
Confidence 344444444444555566666666655554444444
No 322
>PF10157 DUF2365: Uncharacterized conserved protein (DUF2365); InterPro: IPR019314 This entry is found in a highly conserved family of proteins which have no known function.
Probab=26.59 E-value=3.5e+02 Score=21.95 Aligned_cols=17 Identities=18% Similarity=0.202 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 042996 79 MLSEKKQSMVKELNSYV 95 (261)
Q Consensus 79 ~~~~~~~~~~~~l~~~~ 95 (261)
.+..+++..+.-++.|.
T Consensus 130 ~La~qIK~Ik~~lD~lE 146 (149)
T PF10157_consen 130 KLAQQIKDIKKLLDLLE 146 (149)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45566666666666554
No 323
>PRK00106 hypothetical protein; Provisional
Probab=26.55 E-value=3.9e+02 Score=26.45 Aligned_cols=29 Identities=14% Similarity=0.245 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHhHH-HHHHHHHHHHHHHHH
Q 042996 147 ETDQAIERSKQVVH-ETINVGTETAAVLKA 175 (261)
Q Consensus 147 ~~~~~L~~s~~~~~-ete~ig~~il~~L~~ 175 (261)
+...-...+..-++ ...+.|.+++.+|.-
T Consensus 298 rIEe~v~k~~~e~~~~i~~~Ge~a~~~lg~ 327 (535)
T PRK00106 298 RIEELVEKNRLEMDNRIREYGEAAAYEIGA 327 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 33444444444443 345577777776653
No 324
>PHA03011 hypothetical protein; Provisional
Probab=26.53 E-value=94 Score=23.57 Aligned_cols=16 Identities=31% Similarity=0.642 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHhhccC
Q 042996 221 IVIGVIAIIIVKLVNP 236 (261)
Q Consensus 221 l~i~Ii~vi~~k~~~~ 236 (261)
++-.+|.+++||+..-
T Consensus 10 Lis~iIiII~ykiIN~ 25 (120)
T PHA03011 10 LISSIIIIILYKIINI 25 (120)
T ss_pred HHHHHHHHHHHHHhcC
Confidence 4556667888888753
No 325
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=26.28 E-value=5.4e+02 Score=24.02 Aligned_cols=23 Identities=22% Similarity=0.128 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 042996 81 SEKKQSMVKELNSYVALKKQHQT 103 (261)
Q Consensus 81 ~~~~~~~~~~l~~~~~~~k~~~~ 103 (261)
...+..+..+|+.+..++...+.
T Consensus 293 s~~V~~~t~~L~~IseeLe~vK~ 315 (359)
T PF10498_consen 293 SEGVSERTRELAEISEELEQVKQ 315 (359)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555544444433
No 326
>PRK06073 NADH dehydrogenase subunit A; Validated
Probab=26.26 E-value=1.8e+02 Score=22.87 Aligned_cols=35 Identities=20% Similarity=0.337 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHhhccCC---CCccCCCCCCCCchhhhc
Q 042996 221 IVIGVIAIIIVKLVNPN---NKDIRDIPGLAPPAMARR 255 (261)
Q Consensus 221 l~i~Ii~vi~~k~~~~~---~~~~~~~~~~~~~~~~~~ 255 (261)
++++++.+++.+++.++ ..|...--|--||....|
T Consensus 18 ~~~~~~~l~l~~ll~p~~~~~~K~~~YEcG~~p~g~~r 55 (124)
T PRK06073 18 LAAGVGTYKLLKLILPSKPTPLKVSRYEAGNPPTGPAK 55 (124)
T ss_pred HHHHHHHHHHHHHhcCCCCCcccCCcccCCCCCCCCCC
Confidence 44555555556666654 346667777777744333
No 327
>PF14851 FAM176: FAM176 family
Probab=26.16 E-value=2.4e+02 Score=23.01 Aligned_cols=9 Identities=0% Similarity=0.294 Sum_probs=4.2
Q ss_pred hhhHHHHHH
Q 042996 210 TDKCIMAML 218 (261)
Q Consensus 210 ~dK~i~~~i 218 (261)
.-|+-+||+
T Consensus 19 PE~~aLYFv 27 (153)
T PF14851_consen 19 PERFALYFV 27 (153)
T ss_pred hHHHHHHHH
Confidence 344455544
No 328
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=26.12 E-value=8.7e+02 Score=26.37 Aligned_cols=61 Identities=11% Similarity=0.209 Sum_probs=40.3
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042996 148 TDQAIERSKQVVHETINVGTETAAVLKAQTEQMSRIVNELDSIHFSIKKASQLVKEIGRQV 208 (261)
Q Consensus 148 ~~~~L~~s~~~~~ete~ig~~il~~L~~Qre~l~~~~~~l~~i~~~L~~s~~~l~~m~rr~ 208 (261)
....+.....-+.....+...++++...-.+..........++......-...|..|.+..
T Consensus 947 ~~~~i~~le~~i~~lg~VN~~Aiee~e~~~~r~~~l~~~~~dl~~a~~~l~~~i~~~d~~~ 1007 (1163)
T COG1196 947 LEREIERLEEEIEALGPVNLRAIEEYEEVEERYEELKSQREDLEEAKEKLLEVIEELDKEK 1007 (1163)
T ss_pred HHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555666677777777777777777777777777777777777775553
No 329
>COG5415 Predicted integral membrane metal-binding protein [General function prediction only]
Probab=26.09 E-value=4e+02 Score=23.10 Aligned_cols=26 Identities=15% Similarity=0.415 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042996 181 SRIVNELDSIHFSIKKASQLVKEIGR 206 (261)
Q Consensus 181 ~~~~~~l~~i~~~L~~s~~~l~~m~r 206 (261)
.++...++..+-+++++..++..+.-
T Consensus 18 ~rle~qi~q~~~~~~~~qs~l~~~~~ 43 (251)
T COG5415 18 SRLESQIHQLDVALKKSQSILSQWQS 43 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444433
No 330
>PHA02650 hypothetical protein; Provisional
Probab=26.04 E-value=88 Score=22.62 Aligned_cols=17 Identities=6% Similarity=0.190 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHhhccC
Q 042996 220 LIVIGVIAIIIVKLVNP 236 (261)
Q Consensus 220 ll~i~Ii~vi~~k~~~~ 236 (261)
+++++|++++.+-++|.
T Consensus 56 i~~v~i~~l~~flYLK~ 72 (81)
T PHA02650 56 IFSLIIVALFSFFVFKG 72 (81)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444545555555544
No 331
>PRK13831 conjugal transfer protein TrbI; Provisional
Probab=25.76 E-value=92 Score=29.76 Aligned_cols=6 Identities=17% Similarity=0.097 Sum_probs=2.3
Q ss_pred CCCCCC
Q 042996 242 RDIPGL 247 (261)
Q Consensus 242 ~~~~~~ 247 (261)
++.|.+
T Consensus 92 ~p~p~~ 97 (432)
T PRK13831 92 QPTPVE 97 (432)
T ss_pred CCCCCC
Confidence 334433
No 332
>COG4068 Uncharacterized protein containing a Zn-ribbon [Function unknown]
Probab=25.75 E-value=1.7e+02 Score=19.96 Aligned_cols=30 Identities=13% Similarity=0.494 Sum_probs=15.6
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHhh
Q 042996 204 IGRQVATDKCIMAMLFLIVIGVIAIIIVKL 233 (261)
Q Consensus 204 m~rr~~~dK~i~~~iill~i~Ii~vi~~k~ 233 (261)
+++.-...|-++++.++++.+|++.+++-+
T Consensus 33 l~ker~R~r~~~~~~~li~aLi~v~vvL~~ 62 (64)
T COG4068 33 LNKERKRQRNFMILMFLILALILVMVVLPY 62 (64)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 333344444555555556666555555544
No 333
>PF15372 DUF4600: Domain of unknown function (DUF4600)
Probab=25.74 E-value=3.4e+02 Score=21.53 Aligned_cols=68 Identities=15% Similarity=0.266 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHhhhhchhhhcchhHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhhcCCCChHhHHHHHHHHHHHHH
Q 042996 11 AEINGQITDIFRALSNGFQKLEKIKDVNRQSRQLEELTD-KMRECKRLIKEFDREVKDIEGRNDPETNKMLSEKKQSMVK 89 (261)
Q Consensus 11 ~~~e~~~~~i~~~i~~~~~~L~~~~~~~~r~~~i~~i~~-~l~ea~~ll~qme~Ev~~~~~s~~~~~r~~~~~~~~~~~~ 89 (261)
-..+.++...+.-+...+.++... +..+...++..+. ..+.+..++++||.|=+ .+.+.++.|.-
T Consensus 14 ~E~N~QLekqi~~l~~kiek~r~n--~~drl~siR~ye~Ms~~~l~~llkqLEkeK~------------~Le~qlk~~e~ 79 (129)
T PF15372_consen 14 LELNDQLEKQIIILREKIEKIRGN--PSDRLSSIRRYEQMSVESLNQLLKQLEKEKR------------SLENQLKDYEW 79 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCC--CccccHHHHHHhhccHHHHHHHHHHHHHHHH------------HHHHHHHHHHH
Confidence 345566666666667777666653 2224444444322 23677888888888832 35555665554
Q ss_pred HHH
Q 042996 90 ELN 92 (261)
Q Consensus 90 ~l~ 92 (261)
.|.
T Consensus 80 rLe 82 (129)
T PF15372_consen 80 RLE 82 (129)
T ss_pred HHH
Confidence 444
No 334
>PF14914 LRRC37AB_C: LRRC37A/B like protein 1 C-terminal domain
Probab=25.66 E-value=1.6e+02 Score=23.95 Aligned_cols=17 Identities=18% Similarity=0.122 Sum_probs=10.0
Q ss_pred HHHHhhhhhHHHHHHHH
Q 042996 204 IGRQVATDKCIMAMLFL 220 (261)
Q Consensus 204 m~rr~~~dK~i~~~iil 220 (261)
.-...+.||+|+.+.+.
T Consensus 112 Vp~~gY~nklilaisvt 128 (154)
T PF14914_consen 112 VPGYGYNNKLILAISVT 128 (154)
T ss_pred cccccccchhHHHHHHH
Confidence 33445677887766443
No 335
>PRK10414 biopolymer transport protein ExbB; Provisional
Probab=25.46 E-value=80 Score=27.80 Aligned_cols=34 Identities=24% Similarity=0.195 Sum_probs=17.9
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhh
Q 042996 200 LVKEIGRQVATDKCIMAMLFLIVIGVIAIIIVKL 233 (261)
Q Consensus 200 ~l~~m~rr~~~dK~i~~~iill~i~Ii~vi~~k~ 233 (261)
++..+..--.--|++||.++++.+.-+.+++.|+
T Consensus 12 i~~~~~~gg~~~k~Vm~~Ll~~Si~swaiIieR~ 45 (244)
T PRK10414 12 VWGMYQHADIVVKCVMIGLILASVVTWAIFFSKS 45 (244)
T ss_pred HHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444557888877664443334444444
No 336
>PRK10869 recombination and repair protein; Provisional
Probab=25.29 E-value=6.7e+02 Score=24.75 Aligned_cols=62 Identities=18% Similarity=0.195 Sum_probs=30.7
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhchhh----hcchhHHHHHHHHHHHHH----HHHHHHHHHHHHHHhhh
Q 042996 7 SDDLAEINGQITDIFRALSNGFQKLEK----IKDVNRQSRQLEELTDKM----RECKRLIKEFDREVKDI 68 (261)
Q Consensus 7 s~~l~~~e~~~~~i~~~i~~~~~~L~~----~~~~~~r~~~i~~i~~~l----~ea~~ll~qme~Ev~~~ 68 (261)
.+.+++...++..+..++......++- +...++|...++.+..+. +++-...++++.|+..+
T Consensus 267 ~~~l~~~~~~l~~~~~~l~~~~~~~~~dp~~l~~ie~Rl~~l~~L~rKyg~~~~~~~~~~~~l~~eL~~L 336 (553)
T PRK10869 267 LDMLEEALIQIQEASDELRHYLDRLDLDPNRLAELEQRLSKQISLARKHHVSPEELPQHHQQLLEEQQQL 336 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHh
Confidence 334444444455555455444433321 112356666666666655 44444555556666554
No 337
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=25.26 E-value=1.9e+02 Score=25.50 Aligned_cols=40 Identities=8% Similarity=0.173 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHhhhhh---HHHHHHHHHHHHHHHHHHHh
Q 042996 193 SIKKASQLVKEIGRQVATDK---CIMAMLFLIVIGVIAIIIVK 232 (261)
Q Consensus 193 ~L~~s~~~l~~m~rr~~~dK---~i~~~iill~i~Ii~vi~~k 232 (261)
.|.-..+++=.+.|=+..+| .++++-++++.++||++.|+
T Consensus 197 ~L~~~eR~~ls~~r~vL~nr~~R~~f~~Y~l~LH~lvf~~l~~ 239 (248)
T PF08172_consen 197 RLSPPERIFLSLTRFVLSNRTTRMLFFFYCLGLHLLVFFVLYY 239 (248)
T ss_pred cCChHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHH
Confidence 44445666666666666665 33333334444455555554
No 338
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=25.21 E-value=2.4e+02 Score=19.56 Aligned_cols=54 Identities=20% Similarity=0.288 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042996 46 ELTDKMRECKRLIKEFDREVKDIEGRNDPETNKMLSEKKQSMVKELNSYVALKKQHQT 103 (261)
Q Consensus 46 ~i~~~l~ea~~ll~qme~Ev~~~~~s~~~~~r~~~~~~~~~~~~~l~~~~~~~k~~~~ 103 (261)
+=...|.+++..|++.+..+..+. -+.+.-=......|...+..|+..++++..
T Consensus 22 ~r~~~i~~~e~~l~ea~~~l~qMe----~E~~~~p~s~r~~~~~kl~~yr~~l~~lk~ 75 (79)
T PF05008_consen 22 QRKSLIREIERDLDEAEELLKQME----LEVRSLPPSERNQYKSKLRSYRSELKKLKK 75 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH----HHHCTS-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666666654331 111111114445566666666665555443
No 339
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=25.06 E-value=95 Score=27.90 Aligned_cols=20 Identities=15% Similarity=0.247 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHhhccCCCCc
Q 042996 221 IVIGVIAIIIVKLVNPNNKD 240 (261)
Q Consensus 221 l~i~Ii~vi~~k~~~~~~~~ 240 (261)
++++++.+|+.++++++++.
T Consensus 242 ~ll~l~Gii~~~~~r~~~~~ 261 (281)
T PF12768_consen 242 FLLVLIGIILAYIRRRRQGY 261 (281)
T ss_pred HHHHHHHHHHHHHHhhhccC
Confidence 44555566666666664543
No 340
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=25.00 E-value=4.3e+02 Score=22.41 Aligned_cols=93 Identities=16% Similarity=0.119 Sum_probs=54.2
Q ss_pred hhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhhhHHHHHH
Q 042996 141 GNRMMDETDQAIERSKQVVHETINVGTETAAVLKAQTEQMSRIVNELDSIHFSIKKASQLVKEIGRQV--ATDKCIMAML 218 (261)
Q Consensus 141 ~~~~l~~~~~~L~~s~~~~~ete~ig~~il~~L~~Qre~l~~~~~~l~~i~~~L~~s~~~l~~m~rr~--~~dK~i~~~i 218 (261)
+.+..-.-.++..+..+...+|++...++-..|..=+..++..+.++..+..+=......+..-.+-+ ..|+|.=
T Consensus 93 ~~qk~~tl~e~~en~K~~~e~tEer~~el~kklnslkk~~e~lr~el~k~~e~dpqv~~k~~~~~K~~~eaanrwtD--- 169 (203)
T KOG3433|consen 93 GSQKKATLGESIENRKAGREETEERTDELTKKLNSLKKILESLRWELAKIQETDPQVFEKKVHLEKTMAEAANRWTD--- 169 (203)
T ss_pred hhhhHhHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHhhhhh---
Confidence 44555556678888999999999999877777666666666666665554444333333332222221 2233321
Q ss_pred HHHHHHHHHHHHHhhccCCC
Q 042996 219 FLIVIGVIAIIIVKLVNPNN 238 (261)
Q Consensus 219 ill~i~Ii~vi~~k~~~~~~ 238 (261)
-+.+|+-++|.||.-.+|
T Consensus 170 --nI~il~dy~~rkf~~e~n 187 (203)
T KOG3433|consen 170 --NIFILIDYLYRKFGLEPN 187 (203)
T ss_pred --hHHHHHHHHHHhcCCCHH
Confidence 233345688888865543
No 341
>PF03823 Neurokinin_B: Neurokinin B; InterPro: IPR003635 Tachykinins [, , ] are a group of biologically active peptides which excite neurons, evoke behavioral responses, are potent vasodilatators and contract (directly or indirectly) many smooth muscles. This family includes neurokinins, as well as many other peptides. Like other tachykinins, neurokinins are synthesized as larger protein precursors that are enzymatically converted to their mature forms.; GO: 0007217 tachykinin receptor signaling pathway
Probab=24.91 E-value=68 Score=21.62 Aligned_cols=21 Identities=33% Similarity=0.461 Sum_probs=14.0
Q ss_pred CCCccCCCCCCCCchhhhcccc
Q 042996 237 NNKDIRDIPGLAPPAMARRLLS 258 (261)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~ 258 (261)
.+||+.|.+-.+|.. -|||.-
T Consensus 36 ~skKdsdLyqLPpsl-LRRLyd 56 (59)
T PF03823_consen 36 HSKKDSDLYQLPPSL-LRRLYD 56 (59)
T ss_pred ccccCcchhhCCHHH-HHHHHh
Confidence 467888877665544 777753
No 342
>PF07352 Phage_Mu_Gam: Bacteriophage Mu Gam like protein; InterPro: IPR009951 The Gam protein, originally characterised in Bacteriophage Mu, protects linear double stranded DNA from exonuclease degradation in vitro and in vivo []. This protein is also found in many bacterial species as part of a suspected prophage. Further studies have shown that Gam is a functional counterpart of the eukaryotic Ku protein, which has key roles in DNA repair and in certain transposition events. Gam displays DNA binding characteristics remarkably similar to those of human Ku []. In addition, Gam can interfere with Ty1 retrotransposition in Saccharomyces cerevisiae (Baker's yeast). These data reveal structural and functional parallels between bacteriophage Gam and eukaryotic Ku and suggest that their functions have been evolutionarily conserved [].; GO: 0003690 double-stranded DNA binding, 0042262 DNA protection; PDB: 2P2U_B.
Probab=24.87 E-value=3.6e+02 Score=21.48 Aligned_cols=60 Identities=12% Similarity=0.169 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhc
Q 042996 40 QSRQLEELTDKMRECKRLIKEFDREVKDIEGRNDPETNKMLSEKKQSMVKELNSYVALKKQHQTNLENNKRVDLF 114 (261)
Q Consensus 40 r~~~i~~i~~~l~ea~~ll~qme~Ev~~~~~s~~~~~r~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~R~~L~ 114 (261)
.-+.+.+++..+.+.+.. |+.++.. .+..|......++.+++.+...++.|-. ++|++|+
T Consensus 8 al~ki~~l~~~~~~i~~~---~~~~I~~--------i~~~~~~~~~~l~~~i~~l~~~l~~y~e----~~r~e~~ 67 (149)
T PF07352_consen 8 ALRKIAELQREIARIEAE---ANDEIAR--------IKEWYEAEIAPLQNRIEYLEGLLQAYAE----ANRDELT 67 (149)
T ss_dssp HHHHHHHHHHHHHHHHHH---HHHHHHH--------HHHHHHHHCHHHHHHHHHHHHHHHHHHH----CTHHHH-
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HCHHhcc
Confidence 334444455555444443 4544432 3456677777777777777777776654 3688888
No 343
>PF07850 Renin_r: Renin receptor-like protein; InterPro: IPR012493 The sequences featured in this family are similar to a region of the human renin receptor (Q8NG15 from SWISSPROT) that bears a putative transmembrane spanning segment []. The renin receptor is involved in intracellular signal transduction by the activation of the ERK1/ERK2 pathway, and it also serves to increase the efficiency of angiotensinogen cleavage by receptor-bound renin, therefore facilitating angiotensin II generation and action on a cell surface []. ; GO: 0004872 receptor activity, 0016021 integral to membrane; PDB: 3LC8_A 3LBS_A.
Probab=24.79 E-value=28 Score=26.29 Aligned_cols=21 Identities=14% Similarity=0.270 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 042996 213 CIMAMLFLIVIGVIAIIIVKL 233 (261)
Q Consensus 213 ~i~~~iill~i~Ii~vi~~k~ 233 (261)
+++|++++++++++++.|.-+
T Consensus 57 IiLW~~v~l~~all~i~~~m~ 77 (98)
T PF07850_consen 57 IILWFSVVLALALLAICYAMW 77 (98)
T ss_dssp ---------------------
T ss_pred HHHHHHHHHHHHHHHHHHHhe
Confidence 667776665555555544433
No 344
>cd07633 BAR_OPHN1 The Bin/Amphiphysin/Rvs (BAR) domain of Oligophrenin-1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Oligophrenin-1 (OPHN1) is a GTPase activating protein (GAP) with activity towards RhoA, Rac, and Cdc42, that is expressed in developing spinal cord and in adult brain areas with high plasticity. It plays a role in regulating the actin cystoskeleton as well as morphology changes in axons and dendrites, and may also function in modulating neuronal connectivity. Mutations in the OPHN1 gene causes X-linked mental retardation associated with cerebellar hypoplasia, lateral ventricle enlargement and epilepsy. OPHN1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, and a Rho GAP domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=24.76 E-value=4.5e+02 Score=22.60 Aligned_cols=61 Identities=15% Similarity=0.262 Sum_probs=35.7
Q ss_pred chhhHHHHHHHHHHHHHHHHHHhhhhchhhhcchhHHH--HH----------------HHHHHHHHHHHHHHHHHHHHHH
Q 042996 4 SSISDDLAEINGQITDIFRALSNGFQKLEKIKDVNRQS--RQ----------------LEELTDKMRECKRLIKEFDREV 65 (261)
Q Consensus 4 ~~~s~~l~~~e~~~~~i~~~i~~~~~~L~~~~~~~~r~--~~----------------i~~i~~~l~ea~~ll~qme~Ev 65 (261)
..+-.+++..+..|+.++++-...+.....+.. ..|. .. ...|.+.|.++-.+|..|+.+=
T Consensus 5 ~~hE~ele~~~~~IkkliK~~~~li~a~K~~s~-A~r~Fa~~L~df~f~~igd~~tdde~~I~~sL~~F~~~L~~ie~~r 83 (207)
T cd07633 5 KCYEQELERTNKFIKDVIKDGNALISAIKEYSS-AVQKFSQTLQSFQFDFIGDTLTDDEINIAESFKEFAELLQEVEEER 83 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 345568888888888888766655544222211 1111 11 1225677788888888888663
No 345
>PRK10807 paraquat-inducible protein B; Provisional
Probab=24.76 E-value=6.9e+02 Score=24.72 Aligned_cols=21 Identities=24% Similarity=0.385 Sum_probs=12.6
Q ss_pred hHHHHHHHHHHHHHHHHHHhh
Q 042996 7 SDDLAEINGQITDIFRALSNG 27 (261)
Q Consensus 7 s~~l~~~e~~~~~i~~~i~~~ 27 (261)
.+.|+++.+++..++..|...
T Consensus 412 ps~l~~l~~~~~~il~kin~l 432 (547)
T PRK10807 412 SGGLAQIQQKLMEALDKINNL 432 (547)
T ss_pred CCCHHHHHHHHHHHHHHHhcC
Confidence 345666777777776554433
No 346
>PF10694 DUF2500: Protein of unknown function (DUF2500); InterPro: IPR019635 This entry represents a group of proteins that is largely confined to the Gammaproteobacteria. The function is not known. ; PDB: 3RD4_D 2L0C_A 3Q6C_N.
Probab=24.51 E-value=25 Score=26.82 Aligned_cols=12 Identities=33% Similarity=0.969 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHh
Q 042996 221 IVIGVIAIIIVK 232 (261)
Q Consensus 221 l~i~Ii~vi~~k 232 (261)
++++++++.+++
T Consensus 10 iii~~~~~~~~~ 21 (110)
T PF10694_consen 10 IIIGIIIFVFIR 21 (110)
T ss_dssp ------------
T ss_pred hhhHHHHHHHHH
Confidence 333333333333
No 347
>PF02706 Wzz: Chain length determinant protein; InterPro: IPR003856 A number of related proteins are involved in the synthesis of lipopolysaccharide, O-antigen polysaccharide, capsule polysaccharide and exopolysaccharides. Chain length determinant protein (or wzz protein) is involved in lipopolysaccharide (lps) biosynthesis, conferring a modal distribution of chain length on the O-antigen component of lps []. It gives rise to a reduced number of short chain molecules and increases in numbers of longer molecules, with a modal value of 20. The MPA/MPA2 proteins function in CPS and EPS polymerisation and export [].; GO: 0009103 lipopolysaccharide biosynthetic process, 0016020 membrane; PDB: 4E2H_C 3B8P_A 4E2C_B 4E29_A 3B8O_G 4E2L_I 3B8N_D 3B8M_C.
Probab=24.47 E-value=25 Score=27.45 Aligned_cols=34 Identities=18% Similarity=0.379 Sum_probs=0.0
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhccC
Q 042996 202 KEIGRQVATDKCIMAMLFLIVIGVIAIIIVKLVNP 236 (261)
Q Consensus 202 ~~m~rr~~~dK~i~~~iill~i~Ii~vi~~k~~~~ 236 (261)
+.+.+-...+|++++++++ +++++.++|..+.++
T Consensus 6 ~~l~~~l~r~~~~i~~~~~-l~~~~a~~~~~~~~~ 39 (152)
T PF02706_consen 6 RDLLRILWRRKWLIIIVTL-LFAILAFIYAFFAPP 39 (152)
T ss_dssp -----------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhcc
Confidence 3344445555555544443 444444445544443
No 348
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=24.45 E-value=4.8e+02 Score=22.79 Aligned_cols=29 Identities=14% Similarity=0.197 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042996 161 ETINVGTETAAVLKAQTEQMSRIVNELDS 189 (261)
Q Consensus 161 ete~ig~~il~~L~~Qre~l~~~~~~l~~ 189 (261)
+|+++-..+..++..+|+-.++.-+++..
T Consensus 110 ~tde~k~~~~~ei~k~r~e~~~ml~evK~ 138 (230)
T PF03904_consen 110 DTDELKNIAQNEIKKVREENKSMLQEVKQ 138 (230)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777777888888888777666666544
No 349
>PRK10132 hypothetical protein; Provisional
Probab=24.39 E-value=3.3e+02 Score=20.82 Aligned_cols=50 Identities=6% Similarity=-0.094 Sum_probs=22.0
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 042996 171 AVLKAQ-TEQMSRIVNELDSIHFSIKKASQLVKEIGRQVATDKCIMAMLFL 220 (261)
Q Consensus 171 ~~L~~Q-re~l~~~~~~l~~i~~~L~~s~~~l~~m~rr~~~dK~i~~~iil 220 (261)
.+|+.+ ...+..+++.+.+.......++........-+..+-|-.++|.+
T Consensus 44 ~~lR~r~~~~L~~ar~~l~~~~~~~~~~~~a~~~~~~~V~~~Pw~svgiaa 94 (108)
T PRK10132 44 EAARRKAQALLKETRARMHGRTRVQQAARDAVGCADTFVRERPWCSVGTAA 94 (108)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhCcHHHHHHHH
Confidence 444443 23344445555554443333444444333334444455555443
No 350
>KOG2911 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.30 E-value=6.4e+02 Score=24.21 Aligned_cols=52 Identities=15% Similarity=0.327 Sum_probs=40.8
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042996 155 SKQVVHETINVGTETAAVLKAQTEQMSRIVNELDSIHFSIKKASQLVKEIGR 206 (261)
Q Consensus 155 s~~~~~ete~ig~~il~~L~~Qre~l~~~~~~l~~i~~~L~~s~~~l~~m~r 206 (261)
..+++-++-..|.+++...-.|--.-+++++-|+++...+++.+.+=..|+-
T Consensus 311 ~nkvvl~AyksGs~alK~il~~~~s~ekVed~Ldev~et~d~~~EV~~~la~ 362 (439)
T KOG2911|consen 311 TNKVVLQAYKSGSEALKAILAQGGSTEKVEDVLDEVNETLDRQEEVEDALAS 362 (439)
T ss_pred ccHHHHHHHHHhHHHHHHHHhccCChhhHHHHHHHHHHHHhhHHHHHHHHhc
Confidence 4567788888899998888888777788888888888888888776555543
No 351
>TIGR03054 photo_alph_chp1 putative photosynthetic complex assembly protein. In twenty or so anoxygenic photosynthetic alpha-Proteobacteria known so far, a gene for a member of this protein family is present and is found in the vicinity of puhA, which encodes a component of the photosynthetic reaction center, and other genes associated with photosynthesis. This protein family is suggested, consequently, as a probable assembly factor for the photosynthetic reaction center, but its seems its actual function has not yet been demonstrated.
Probab=24.24 E-value=87 Score=25.05 Aligned_cols=33 Identities=12% Similarity=0.162 Sum_probs=15.9
Q ss_pred HHHHHHHHHHhhccCCCCccCCCCCCCCchhhhccc
Q 042996 222 VIGVIAIIIVKLVNPNNKDIRDIPGLAPPAMARRLL 257 (261)
Q Consensus 222 ~i~Ii~vi~~k~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (261)
+++++++.|-.++ +....+.|.++|++..+-|.
T Consensus 12 l~~~~lva~a~~T---g~~~~~~~p~a~vv~~r~l~ 44 (135)
T TIGR03054 12 LLTFALVAFAVLT---GVGHSGLPAPAAVVASLWLV 44 (135)
T ss_pred HHHHHHhheeeec---CCCccCCCCCCCcEEEEEEE
Confidence 3444455555444 33344555456665344443
No 352
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=24.20 E-value=3.5e+02 Score=21.09 Aligned_cols=53 Identities=23% Similarity=0.403 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCChHhHHHHHHHHHHHHHHHHHHH
Q 042996 42 RQLEELTDKMRECKRLIKEFDREVKDIEGRNDPETNKMLSEKKQSMVKELNSYV 95 (261)
Q Consensus 42 ~~i~~i~~~l~ea~~ll~qme~Ev~~~~~s~~~~~r~~~~~~~~~~~~~l~~~~ 95 (261)
..+..++..+.+++.-+.++..++..... .-...+..+..+...|..++..++
T Consensus 59 ~~L~~lr~e~~~~~~~~~~l~~~~~~a~~-~l~~~e~sw~~qk~~le~e~~~~~ 111 (132)
T PF07926_consen 59 KELQQLREELQELQQEINELKAEAESAKA-ELEESEASWEEQKEQLEKELSELE 111 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhHHHHHHHHHHHHHHHH
Confidence 44555555556666666655555433211 111223334444444444444444
No 353
>COG4420 Predicted membrane protein [Function unknown]
Probab=24.19 E-value=3.4e+02 Score=23.04 Aligned_cols=57 Identities=18% Similarity=0.169 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 042996 161 ETINVGTETAAVLKAQTEQMSRIVNELDSIHFSIKKASQLVKEIGRQVATDKCIMAMLFL 220 (261)
Q Consensus 161 ete~ig~~il~~L~~Qre~l~~~~~~l~~i~~~L~~s~~~l~~m~rr~~~dK~i~~~iil 220 (261)
|...+-..+++.+..+.....+++..... -..-..++.-+|++=..+..+|++++++
T Consensus 11 e~~~~~~~~~~~l~~~~~i~~~~~e~~~~---~~t~gdR~ad~ia~f~Gsw~fil~~~~~ 67 (191)
T COG4420 11 ELSTVPARLFELLRENTPISSDRREEFED---GETFGDRVADKIARFGGSWAFILTFTLL 67 (191)
T ss_pred hhhhhHHHHhHHHHhcchhhcchHHHHhc---ccchhhhHHHHHHHHcCChHHHHHHHHH
Confidence 33344444444555544444444433332 2223344555555544454455544444
No 354
>PF14975 DUF4512: Domain of unknown function (DUF4512)
Probab=24.16 E-value=32 Score=25.44 Aligned_cols=16 Identities=44% Similarity=0.623 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHhhccC
Q 042996 221 IVIGVIAIIIVKLVNP 236 (261)
Q Consensus 221 l~i~Ii~vi~~k~~~~ 236 (261)
|+|=|+++||.||+.|
T Consensus 6 ivIPvLLwIykkFlqP 21 (88)
T PF14975_consen 6 IVIPVLLWIYKKFLQP 21 (88)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 3444555666665543
No 355
>PF12354 Internalin_N: Bacterial adhesion/invasion protein N terminal; PDB: 2OMT_A 1H6U_A 3RFS_A 3RFJ_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=24.15 E-value=26 Score=23.67 Aligned_cols=7 Identities=43% Similarity=0.505 Sum_probs=2.0
Q ss_pred CCCCCCC
Q 042996 242 RDIPGLA 248 (261)
Q Consensus 242 ~~~~~~~ 248 (261)
..+|-|+
T Consensus 34 ~~i~~P~ 40 (57)
T PF12354_consen 34 ASIPQPA 40 (57)
T ss_dssp SS-SS-E
T ss_pred cccCCCC
Confidence 3444333
No 356
>COG0838 NuoA NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]
Probab=24.06 E-value=1.8e+02 Score=22.88 Aligned_cols=36 Identities=25% Similarity=0.512 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHhhccCC---CCccCCCCCCCCchhhhcc
Q 042996 221 IVIGVIAIIIVKLVNPN---NKDIRDIPGLAPPAMARRL 256 (261)
Q Consensus 221 l~i~Ii~vi~~k~~~~~---~~~~~~~~~~~~~~~~~~~ 256 (261)
+.+++..+.+.++++++ ..|..+--|--||..-+|+
T Consensus 19 ~~~~~~~l~l~~lL~p~~~~~~K~~~YE~G~~p~g~a~~ 57 (123)
T COG0838 19 LLLGVLMLFLSKLLGPRRPNPEKLSPYECGNPPFGGARL 57 (123)
T ss_pred HHHHHHHHHHHHHhCCCCCCccccCccccCCCCCCcccc
Confidence 45555567777777654 3478777777777654443
No 357
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=23.99 E-value=9.1e+02 Score=25.84 Aligned_cols=180 Identities=12% Similarity=0.209 Sum_probs=0.0
Q ss_pred CCcchhhHHHHHHHHHHHHHHHHHHhh-----------hhchhhhcch----------------hHHHHHHHHHHHHHHH
Q 042996 1 MDLSSISDDLAEINGQITDIFRALSNG-----------FQKLEKIKDV----------------NRQSRQLEELTDKMRE 53 (261)
Q Consensus 1 ~~~~~~s~~l~~~e~~~~~i~~~i~~~-----------~~~L~~~~~~----------------~~r~~~i~~i~~~l~e 53 (261)
||+.+..|.+++++.++.-+-.+++++ +..|+.++.- .....+.++++.+-+|
T Consensus 332 ~eve~lkEr~deletdlEILKaEmeekG~~~~~~ss~qfkqlEqqN~rLKdalVrLRDlsA~ek~d~qK~~kelE~k~sE 411 (1243)
T KOG0971|consen 332 QEVEALKERVDELETDLEILKAEMEEKGSDGQAASSYQFKQLEQQNARLKDALVRLRDLSASEKQDHQKLQKELEKKNSE 411 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhhH
Q ss_pred HHHHHHHHHHHHhhhcCCCChHhHHHHHHHHHHHHHHHHHHH---HHHHHHhhhhhh-hhhhhhcCCCCCCCCcchhhhh
Q 042996 54 CKRLIKEFDREVKDIEGRNDPETNKMLSEKKQSMVKELNSYV---ALKKQHQTNLEN-NKRVDLFDGPNEGFAEDNVLLA 129 (261)
Q Consensus 54 a~~ll~qme~Ev~~~~~s~~~~~r~~~~~~~~~~~~~l~~~~---~~~k~~~~~~~~-~~R~~L~~~~~~~~~~~n~~~~ 129 (261)
..++..+-|..-+.+ ..++..+..++..++..- .....+.+..-+ .+|-.++... -++..+
T Consensus 412 ~~eL~r~kE~Lsr~~---------d~aEs~iadlkEQVDAAlGAE~MV~qLtdknlnlEekVklLeet------v~dlEa 476 (1243)
T KOG0971|consen 412 LEELRRQKERLSREL---------DQAESTIADLKEQVDAALGAEEMVEQLTDKNLNLEEKVKLLEET------VGDLEA 476 (1243)
T ss_pred HHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHhhcHHHHHHHHHhhccCHHHHHHHHHHH------HHHHHH
Q ss_pred chhhHHHHHHhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042996 130 SSMTNQQLMDSGNRMMDETDQAIERSKQVVHETINVGTETAAVLKAQTEQMSRIVNELDSIHFSIK 195 (261)
Q Consensus 130 ~~~~~~~ll~~~~~~l~~~~~~L~~s~~~~~ete~ig~~il~~L~~Qre~l~~~~~~l~~i~~~L~ 195 (261)
-..-..||...+.+.-.+--..|+.++--..+...--.+..+.+.+--.+|.+.++.+...++.+.
T Consensus 477 lee~~EQL~Esn~ele~DLreEld~~~g~~kel~~r~~aaqet~yDrdqTI~KfRelva~Lqdqlq 542 (1243)
T KOG0971|consen 477 LEEMNEQLQESNRELELDLREELDMAKGARKELQKRVEAAQETVYDRDQTIKKFRELVAHLQDQLQ 542 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
No 358
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=23.94 E-value=4.1e+02 Score=21.77 Aligned_cols=19 Identities=21% Similarity=0.562 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 042996 47 LTDKMRECKRLIKEFDREV 65 (261)
Q Consensus 47 i~~~l~ea~~ll~qme~Ev 65 (261)
.+.++..++..++.|..++
T Consensus 128 ~~~~l~~l~~~~~~~~~e~ 146 (191)
T PF04156_consen 128 VEERLDSLDESIKELEKEI 146 (191)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444333
No 359
>PF03381 CDC50: LEM3 (ligand-effect modulator 3) family / CDC50 family; InterPro: IPR005045 Members of this family have no known function. They have predicted transmembrane helices.; GO: 0016020 membrane
Probab=23.92 E-value=1.1e+02 Score=27.41 Aligned_cols=16 Identities=31% Similarity=0.665 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHhhccCC
Q 042996 221 IVIGVIAIIIVKLVNPN 237 (261)
Q Consensus 221 l~i~Ii~vi~~k~~~~~ 237 (261)
++++|++++++ +++++
T Consensus 257 ~v~~i~~~~~~-~~~~r 272 (278)
T PF03381_consen 257 LVLAIIFLIIH-YFKPR 272 (278)
T ss_pred HHHHHHHHHHH-HhCCC
Confidence 44555444444 44544
No 360
>PRK10801 colicin uptake protein TolQ; Provisional
Probab=23.84 E-value=90 Score=27.09 Aligned_cols=23 Identities=39% Similarity=0.364 Sum_probs=12.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhh
Q 042996 211 DKCIMAMLFLIVIGVIAIIIVKL 233 (261)
Q Consensus 211 dK~i~~~iill~i~Ii~vi~~k~ 233 (261)
-|+++|.++++.+..+.|++.|+
T Consensus 14 ~k~vm~~Ll~~Si~s~aIiieR~ 36 (227)
T PRK10801 14 VKLIMLILIGFSIASWAIIIQRT 36 (227)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677776654444444444443
No 361
>PF10812 DUF2561: Protein of unknown function (DUF2561); InterPro: IPR024381 This family of proteins with unknown function appears to be found predominantly in Mycobacterium spp.
Probab=23.66 E-value=61 Score=27.66 Aligned_cols=14 Identities=14% Similarity=0.230 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHH
Q 042996 213 CIMAMLFLIVIGVI 226 (261)
Q Consensus 213 ~i~~~iill~i~Ii 226 (261)
|.+|.+|++..+||
T Consensus 64 WvLY~VI~VSaaVI 77 (207)
T PF10812_consen 64 WVLYAVIGVSAAVI 77 (207)
T ss_pred EeehHHHHHHHHHH
Confidence 67777776555555
No 362
>PF11031 Phage_holin_T: Bacteriophage T holin; InterPro: IPR020982 One mechanism by which bacteriophages effect host lysis begins with the accumulation of a holin in the host membrane and an endolysin in the host cytoplasm during late gene expression. At an allele-specific time, the holin disrupts the membrane, thus allowing the endolysin to enter the periplasm and degrade the cell wall peptidoglycan. This entry represents a specific holin, known as T, which has an unusual C-terminal periplasmic domain thought to be involved in the transduction of environmental information for the real-time control of lysis timing [].
Probab=23.58 E-value=75 Score=27.22 Aligned_cols=34 Identities=24% Similarity=0.380 Sum_probs=21.2
Q ss_pred HHHHHHHHHhhhhhHHHHHHHH-HHHHHHHHHHHh
Q 042996 199 QLVKEIGRQVATDKCIMAMLFL-IVIGVIAIIIVK 232 (261)
Q Consensus 199 ~~l~~m~rr~~~dK~i~~~iil-l~i~Ii~vi~~k 232 (261)
.+|..+-+-..+.|+++.=+++ +++.|++++|+|
T Consensus 14 ~lLdrlfkd~~tgk~L~~Rv~~iivlfim~l~wyk 48 (216)
T PF11031_consen 14 GLLDRLFKDNKTGKVLFSRVIVIIVLFIMALIWYK 48 (216)
T ss_pred HHHHHHHhccCcHHHHHHHHHHHHHHHHHhheeec
Confidence 4555666667778888776665 444444666654
No 363
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=23.50 E-value=4e+02 Score=23.38 Aligned_cols=66 Identities=15% Similarity=0.354 Sum_probs=0.0
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHhhhhchhhhc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 042996 3 LSSISDDLAEINGQITDIFRALSNGFQKLEKIK-DVNRQSRQLEELTDKMRECKRLIKEFDREVKDI 68 (261)
Q Consensus 3 ~~~~s~~l~~~e~~~~~i~~~i~~~~~~L~~~~-~~~~r~~~i~~i~~~l~ea~~ll~qme~Ev~~~ 68 (261)
+..|.++.+.+.+.+....++=+..+..+..+. ..++-+..++.++...+.+++.++.+.-|+..+
T Consensus 130 ~~d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L 196 (290)
T COG4026 130 YMDLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDL 196 (290)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHH
No 364
>PF12751 Vac7: Vacuolar segregation subunit 7; InterPro: IPR024260 Vac7 is localised at the vacuole membrane, a location which is consistent with its involvement in vacuole morphology and inheritance []. Vac7 has been shown to function as an upstream regulator of the Fab1 lipid kinase pathway []. The Fab1 lipid pathway is important for correct regulation of membrane trafficking events.
Probab=23.45 E-value=97 Score=29.18 Aligned_cols=13 Identities=0% Similarity=-0.000 Sum_probs=5.8
Q ss_pred HhhhhhHHHHHHH
Q 042996 207 QVATDKCIMAMLF 219 (261)
Q Consensus 207 r~~~dK~i~~~ii 219 (261)
|-...|+..|+++
T Consensus 296 r~~~~r~~~c~~~ 308 (387)
T PF12751_consen 296 RSWFSRFASCIYL 308 (387)
T ss_pred ccHHhhhhHHHHH
Confidence 3444444444443
No 365
>PRK07248 hypothetical protein; Provisional
Probab=23.34 E-value=86 Score=22.62 Aligned_cols=22 Identities=27% Similarity=0.632 Sum_probs=19.6
Q ss_pred CCcchhhHHHHHHHHHHHHHHH
Q 042996 1 MDLSSISDDLAEINGQITDIFR 22 (261)
Q Consensus 1 ~~~~~~s~~l~~~e~~~~~i~~ 22 (261)
|++..+...|+.++.++-.++.
T Consensus 1 m~L~~lR~~ID~iD~~i~~Ll~ 22 (87)
T PRK07248 1 MDLEEIRQEIDQIDDQLVALLE 22 (87)
T ss_pred CCHHHHHHHHHHHHHHHHHHHH
Confidence 8888999999999999999884
No 366
>PLN03094 Substrate binding subunit of ER-derived-lipid transporter; Provisional
Probab=23.24 E-value=1.2e+02 Score=28.48 Aligned_cols=32 Identities=6% Similarity=0.124 Sum_probs=18.4
Q ss_pred HHHHHhhhhhHHHHHHHH-HHHHHHHHHHHhhc
Q 042996 203 EIGRQVATDKCIMAMLFL-IVIGVIAIIIVKLV 234 (261)
Q Consensus 203 ~m~rr~~~dK~i~~~iil-l~i~Ii~vi~~k~~ 234 (261)
.|.||.....++-+++++ +++++++++|++-+
T Consensus 77 ~~~rrsvrEg~VGlfvL~gi~ll~~~~~~L~g~ 109 (370)
T PLN03094 77 GFGKRSVWEGGVGLFLLSGAALLALTLAWLRGF 109 (370)
T ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 377887777666555554 44444455555444
No 367
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=23.19 E-value=3.3e+02 Score=20.49 Aligned_cols=9 Identities=11% Similarity=0.316 Sum_probs=3.6
Q ss_pred HHHHHHHHH
Q 042996 57 LIKEFDREV 65 (261)
Q Consensus 57 ll~qme~Ev 65 (261)
-+..++.++
T Consensus 66 dv~~L~l~l 74 (106)
T PF10805_consen 66 DVHDLQLEL 74 (106)
T ss_pred HHHHHHHHH
Confidence 333334443
No 368
>PF05473 Herpes_UL45: UL45 protein; InterPro: IPR008646 This family consists several UL45 proteins and homologues found in the herpes simplex virus family. The herpes simplex virus UL45 gene encodes an 18 kDa virion envelope protein whose function remains unknown. It has been suggested that the 18 kDa UL45 gene product is required for efficient growth in the central nervous system at low doses and may play an important role under the conditions of a naturally acquired infection []. The Equine herpesvirus 1 UL45 protein represents a type II membrane glycoprotein which has found to be non-essential for EHV-1 growth in vitro but deletion reduces the viruses' replication efficiency [].
Probab=22.96 E-value=1e+02 Score=26.17 Aligned_cols=11 Identities=9% Similarity=-0.073 Sum_probs=5.3
Q ss_pred CCccCCCCCCC
Q 042996 238 NKDIRDIPGLA 248 (261)
Q Consensus 238 ~~~~~~~~~~~ 248 (261)
...-...+||.
T Consensus 77 ~~~~~~~~CP~ 87 (200)
T PF05473_consen 77 QSALGCGPCPK 87 (200)
T ss_pred HhhccCCCCCc
Confidence 33444555553
No 369
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=22.87 E-value=4.4e+02 Score=25.13 Aligned_cols=25 Identities=28% Similarity=0.310 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 042996 79 MLSEKKQSMVKELNSYVALKKQHQT 103 (261)
Q Consensus 79 ~~~~~~~~~~~~l~~~~~~~k~~~~ 103 (261)
++......+...++.+...++.+..
T Consensus 379 ~l~~~~~~l~~~~~~l~~~~~~l~~ 403 (451)
T PF03961_consen 379 KLKEKKKELKEELKELKEELKELKE 403 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555554444443
No 370
>PF11068 YlqD: YlqD protein; InterPro: IPR021297 This bacterial family of proteins has no known function. ; PDB: 4DCI_C.
Probab=22.71 E-value=3.9e+02 Score=21.14 Aligned_cols=32 Identities=13% Similarity=0.314 Sum_probs=23.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 042996 37 VNRQSRQLEELTDKMRECKRLIKEFDREVKDI 68 (261)
Q Consensus 37 ~~~r~~~i~~i~~~l~ea~~ll~qme~Ev~~~ 68 (261)
+.+|.....++...+..++.-+.|++.+.+.+
T Consensus 15 e~~K~~l~~~l~~~i~~~d~el~QLefq~kr~ 46 (131)
T PF11068_consen 15 EKWKEELLQELQEQIQQLDQELQQLEFQGKRM 46 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777788888888888777777776543
No 371
>KOG1691 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.70 E-value=5e+02 Score=22.38 Aligned_cols=23 Identities=13% Similarity=0.313 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhccC
Q 042996 214 IMAMLFLIVIGVIAIIIVKLVNP 236 (261)
Q Consensus 214 i~~~iill~i~Ii~vi~~k~~~~ 236 (261)
|+.+++++.+++.-++|+|-|..
T Consensus 183 i~Sl~v~~~va~~QvlyLK~fF~ 205 (210)
T KOG1691|consen 183 ILSLVVLLSVAGWQVLYLKRFFQ 205 (210)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445556677777777776554
No 372
>TIGR02736 cbb3_Q_epsi cytochrome c oxidase, cbb3-type, CcoQ subunit, epsilon-Proteobacterial. Members of this protein family are restricted to the epsilon branch of the Proteobacteria. All members are found in operons containing the other three structural subunits of the cbb3 type of cytochrome c oxidase. These small proteins show remote sequence similarity to the CcoQ subunit in other cytochrome c oxidase systems, so this family is assumed to represent the epsilonproteobacterial variant of CcoQ.
Probab=22.66 E-value=1.1e+02 Score=20.66 Aligned_cols=8 Identities=0% Similarity=0.264 Sum_probs=3.3
Q ss_pred HHHHHHHH
Q 042996 221 IVIGVIAI 228 (261)
Q Consensus 221 l~i~Ii~v 228 (261)
++++|+++
T Consensus 9 i~lvv~LY 16 (56)
T TIGR02736 9 LLLVIFLY 16 (56)
T ss_pred HHHHHHHH
Confidence 34444433
No 373
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=22.65 E-value=1e+03 Score=25.98 Aligned_cols=24 Identities=17% Similarity=0.270 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 042996 169 TAAVLKAQTEQMSRIVNELDSIHF 192 (261)
Q Consensus 169 il~~L~~Qre~l~~~~~~l~~i~~ 192 (261)
++..|..+-++|..--..+..-..
T Consensus 772 ~I~~l~~~i~~L~~~l~~ie~~r~ 795 (1201)
T PF12128_consen 772 RIQQLKQEIEQLEKELKRIEERRA 795 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHH
Confidence 345555555444444444433333
No 374
>TIGR01432 QOXA cytochrome aa3 quinol oxidase, subunit II. This enzyme catalyzes the oxidation of quinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. This subunit contains two transmembrane helices and a large external domain responsible for the binding and oxidation of quinol. QuoX is (presently) only found in gram positive bacteria of the Bacillus/Staphylococcus group. Like CyoA, the ubiquinol oxidase found in proteobacteria, the residues responsible for the ligation of Cu(a) and cytochrome c (found in the related cyt. c oxidases) are absent. Unlike CyoA, QoxA is in complex with a subunit I which contains cytochromes a similar to the cyt. c oxidases (as opposed to cytochromes b).
Probab=22.64 E-value=1.3e+02 Score=25.85 Aligned_cols=17 Identities=24% Similarity=0.364 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHhhccCC
Q 042996 221 IVIGVIAIIIVKLVNPN 237 (261)
Q Consensus 221 l~i~Ii~vi~~k~~~~~ 237 (261)
++.++++++++|+.+++
T Consensus 36 vv~~lli~~~~kyr~r~ 52 (217)
T TIGR01432 36 VVFVLFTIFLVKYRYRK 52 (217)
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 34444456666665443
No 375
>TIGR02161 napC_nirT periplasmic nitrate (or nitrite) reductase c-type cytochrome, NapC/NirT family. Nearly every member of this subfamily is NapC, a predicted membrane-anchored four-heme c-type cytochrome that forms one component of the periplasmic nitrate reductase along with NapA, NapB, NapD, NapE, and NapF subunits. A single known exception at this time is NirT, which is instead a component of a nitrite reductase. This family excludes TorC subunits of trimethylamine N-oxide (TMAO) reductases.
Probab=22.46 E-value=1.5e+02 Score=24.93 Aligned_cols=8 Identities=25% Similarity=0.360 Sum_probs=3.2
Q ss_pred HHHHHHHH
Q 042996 221 IVIGVIAI 228 (261)
Q Consensus 221 l~i~Ii~v 228 (261)
++++++++
T Consensus 25 ~~~G~~~~ 32 (185)
T TIGR02161 25 FVGGIVFW 32 (185)
T ss_pred HHHHHHHH
Confidence 34444433
No 376
>TIGR02796 tolQ TolQ protein. TolQ is one of the essential components of the Tol-Pal system. Together with TolR, it harnesses protonmotive force to energize TolA, which spans the periplasm to reach the complex of TolB and Pal at the outer member. The tol-pal system proves to be important for maintaining outer membrane integrity. Gene pairs similar to the TolQ and TolR gene pair often number several per genome, but this model describes specificially TolQ per se, as found in tol-pal operons. A close homolog, excluded from this model, is ExbB of the ExbB/ExbD/TonB protein complex, which powers transport of siderophores and vitamin B12 across the bacterial outer membrane. The Tol-Pal system is exploited by colicin and filamentous phage DNA to enter the cell. It is also implicated in pathogenesis in several bacterial species
Probab=22.39 E-value=1e+02 Score=26.47 Aligned_cols=22 Identities=41% Similarity=0.387 Sum_probs=11.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHh
Q 042996 211 DKCIMAMLFLIVIGVIAIIIVK 232 (261)
Q Consensus 211 dK~i~~~iill~i~Ii~vi~~k 232 (261)
.|++||.++++.+..+++++.|
T Consensus 13 ~~~vm~~Ll~~Sii~~aviieR 34 (215)
T TIGR02796 13 VKLVMLILLLASIISWAIIFQK 34 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777665333333344433
No 377
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=22.36 E-value=84 Score=25.46 Aligned_cols=12 Identities=0% Similarity=0.249 Sum_probs=5.1
Q ss_pred HHHHHHHHHhhc
Q 042996 223 IGVIAIIIVKLV 234 (261)
Q Consensus 223 i~Ii~vi~~k~~ 234 (261)
++|+++++++|+
T Consensus 18 flil~~lL~~fl 29 (164)
T PRK14473 18 FLLLIFLLRTFL 29 (164)
T ss_pred HHHHHHHHHHHH
Confidence 333344444444
No 378
>PF15190 DUF4583: Domain of unknown function (DUF4583)
Probab=22.35 E-value=1.1e+02 Score=24.07 Aligned_cols=21 Identities=38% Similarity=0.612 Sum_probs=12.0
Q ss_pred ccCCCCCCCCch------hhhccccCC
Q 042996 240 DIRDIPGLAPPA------MARRLLSNP 260 (261)
Q Consensus 240 ~~~~~~~~~~~~------~~~~~~~~~ 260 (261)
-+|..|.+.|+. -++||++.|
T Consensus 40 hiq~~~~~~~~~~sW~~s~~~rL~slP 66 (128)
T PF15190_consen 40 HIQRAPRPPPSQLSWSQSLKARLLSLP 66 (128)
T ss_pred HHHhccCCCcccccchHHHHhhcccCc
Confidence 556555444432 177888766
No 379
>PF09788 Tmemb_55A: Transmembrane protein 55A; InterPro: IPR019178 Members of this family catalyse the hydrolysis of the 4-position phosphate of phosphatidylinositol 4,5-bisphosphate, in the reaction: 1-phosphatidyl-myo-inositol 4,5-bisphosphate + H(2)O = 1-phosphatidyl-1D-myo-inositol 5-phosphate + phosphate.
Probab=22.33 E-value=69 Score=28.39 Aligned_cols=19 Identities=21% Similarity=0.422 Sum_probs=11.4
Q ss_pred HHHHHHhhhhhHHHHHHHH
Q 042996 202 KEIGRQVATDKCIMAMLFL 220 (261)
Q Consensus 202 ~~m~rr~~~dK~i~~~iil 220 (261)
..+..+....|+|+++++.
T Consensus 187 SSVG~~faRkR~i~f~llg 205 (256)
T PF09788_consen 187 SSVGPRFARKRAIIFFLLG 205 (256)
T ss_pred ccccchHhhhHHHHHHHHH
Confidence 3445555566777777665
No 380
>COG1622 CyoA Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion]
Probab=22.31 E-value=1.4e+02 Score=26.44 Aligned_cols=19 Identities=21% Similarity=0.200 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHhhccC
Q 042996 218 LFLIVIGVIAIIIVKLVNP 236 (261)
Q Consensus 218 iill~i~Ii~vi~~k~~~~ 236 (261)
|+++++++.+++.+|+-+.
T Consensus 44 I~~~V~~~~~~~~~k~R~~ 62 (247)
T COG1622 44 IVLPVIVLLVYFAWKYRAS 62 (247)
T ss_pred HHHHHHHHHHHHHhhhhhc
Confidence 3335555556666666444
No 381
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=22.16 E-value=1.1e+03 Score=25.99 Aligned_cols=21 Identities=24% Similarity=0.438 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 042996 42 RQLEELTDKMRECKRLIKEFD 62 (261)
Q Consensus 42 ~~i~~i~~~l~ea~~ll~qme 62 (261)
..++.+..+++.++.-|+.-.
T Consensus 405 E~lK~~~~k~kKleke~ek~~ 425 (1293)
T KOG0996|consen 405 EKLKRLTSKIKKLEKEIEKAR 425 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444443333
No 382
>PRK12800 fliF flagellar MS-ring protein; Reviewed
Probab=22.09 E-value=2.7e+02 Score=27.80 Aligned_cols=16 Identities=13% Similarity=0.158 Sum_probs=7.0
Q ss_pred hHHHHHHHHHHHHHHH
Q 042996 212 KCIMAMLFLIVIGVIA 227 (261)
Q Consensus 212 K~i~~~iill~i~Ii~ 227 (261)
|+++.+++++++++++
T Consensus 32 ~i~l~~~~~~~v~~~~ 47 (574)
T PRK12800 32 KLTMMAMIALAVAAGL 47 (574)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4555444443444433
No 383
>TIGR00255 conserved hypothetical protein TIGR00255. The apparent ortholog from Aquifex aeolicus as reported is split into two consecutive reading frames.
Probab=22.02 E-value=4.7e+02 Score=23.60 Aligned_cols=65 Identities=9% Similarity=0.120 Sum_probs=35.3
Q ss_pred HHHHHHHHhhhhchhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCChHhHHHHHHHHHHH
Q 042996 18 TDIFRALSNGFQKLEKIKDVNRQSRQLEELTDKMRECKRLIKEFDREVKDIEGRNDPETNKMLSEKKQSM 87 (261)
Q Consensus 18 ~~i~~~i~~~~~~L~~~~~~~~r~~~i~~i~~~l~ea~~ll~qme~Ev~~~~~s~~~~~r~~~~~~~~~~ 87 (261)
..++..+..++..|.... ..+-...-..+...+..++.++.+++-.+ +.....++.++..+++.+
T Consensus 131 ~~l~~al~~AL~~l~~mR-~~EG~~L~~dl~~rl~~i~~~v~~i~~~~----p~~~~~~~~rL~~rl~el 195 (291)
T TIGR00255 131 ALILGALEEALLDFINMR-EFEGENLKSDIVQRLDLIEREVKKVRSAM----PDILQWQRERLKARIEDL 195 (291)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhc----hHHHHHHHHHHHHHHHHH
Confidence 455555566666655432 22334566667777777777776666543 222344555555555554
No 384
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=21.89 E-value=76 Score=28.63 Aligned_cols=10 Identities=10% Similarity=0.069 Sum_probs=4.1
Q ss_pred HHHHhhccCC
Q 042996 228 IIIVKLVNPN 237 (261)
Q Consensus 228 vi~~k~~~~~ 237 (261)
+|.|.+.|++
T Consensus 289 LiaYli~Rrr 298 (306)
T PF01299_consen 289 LIAYLIGRRR 298 (306)
T ss_pred HHhheeEecc
Confidence 3344444443
No 385
>PF06789 UPF0258: Uncharacterised protein family (UPF0258); InterPro: IPR009626 This is a group of proteins of unknown function.
Probab=21.76 E-value=59 Score=26.56 Aligned_cols=33 Identities=27% Similarity=0.387 Sum_probs=16.3
Q ss_pred HHHHHHHHHhhhhhHHHH-H-HHHHHHHHHHHHHH
Q 042996 199 QLVKEIGRQVATDKCIMA-M-LFLIVIGVIAIIIV 231 (261)
Q Consensus 199 ~~l~~m~rr~~~dK~i~~-~-iill~i~Ii~vi~~ 231 (261)
.+|+.-.......|+.-+ + |++.+|++|+||++
T Consensus 118 sLLKkKEae~kr~K~Cki~~Li~~~vc~~ilVivV 152 (159)
T PF06789_consen 118 SLLKKKEAELKRSKVCKIFALIVLAVCAVILVIVV 152 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHheEEEEE
Confidence 455555555555554433 2 33355566655544
No 386
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=21.72 E-value=8.9e+02 Score=24.91 Aligned_cols=18 Identities=17% Similarity=0.235 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 042996 79 MLSEKKQSMVKELNSYVA 96 (261)
Q Consensus 79 ~~~~~~~~~~~~l~~~~~ 96 (261)
++...++.+...+..++.
T Consensus 636 ~~~~EL~~~~~~l~~l~~ 653 (717)
T PF10168_consen 636 EFKKELERMKDQLQDLKA 653 (717)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344445555555544443
No 387
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=21.69 E-value=3.2e+02 Score=19.68 Aligned_cols=21 Identities=10% Similarity=0.153 Sum_probs=15.0
Q ss_pred hHHHHHHHHHHHHHHHHHHhh
Q 042996 7 SDDLAEINGQITDIFRALSNG 27 (261)
Q Consensus 7 s~~l~~~e~~~~~i~~~i~~~ 27 (261)
.+.|+.+..+|..+..++.+.
T Consensus 3 ~elLd~ir~Ef~~~~~e~~~~ 23 (79)
T PF08581_consen 3 NELLDAIRQEFENLSQEANSY 23 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 467788888888887666544
No 388
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=21.66 E-value=3.4e+02 Score=20.00 Aligned_cols=27 Identities=19% Similarity=0.439 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042996 41 SRQLEELTDKMRECKRLIKEFDREVKD 67 (261)
Q Consensus 41 ~~~i~~i~~~l~ea~~ll~qme~Ev~~ 67 (261)
...+..+.....++...|+.|+.....
T Consensus 49 ~~~~~~~~~~~~~i~~~lk~l~~~~~~ 75 (117)
T smart00503 49 ERLIDDIKRLAKEIRAKLKELEKENLE 75 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHh
Confidence 356666677778888888888876543
No 389
>PF04906 Tweety: Tweety; InterPro: IPR006990 None of the members of the tweety (tty) family have been functionally characterised. However, they are considered to be transmembrane proteins with five potential membrane-spanning regions. A number of potential functions have been suggested on the basis of homology to the yeast FTR1 and FTH1 iron transporter proteins and the mammalian neurotensin receptors 1 and 2 in that they have a similar hydrophobicity profiles although there is no detectable sequence homology to the tweety-related proteins. It has been proposed that the tweety-related proteins could be involved in transport of iron or other divalent cations or alternatively that they may be membrane-bound receptors [].
Probab=21.56 E-value=6.9e+02 Score=23.60 Aligned_cols=29 Identities=7% Similarity=0.099 Sum_probs=17.6
Q ss_pred hhhhHHHHHHHH-HHHHHHHHHHHhhccCC
Q 042996 209 ATDKCIMAMLFL-IVIGVIAIIIVKLVNPN 237 (261)
Q Consensus 209 ~~dK~i~~~iil-l~i~Ii~vi~~k~~~~~ 237 (261)
-.-||..+++++ +.++++++..+.+.|++
T Consensus 182 E~yRw~~~~~lL~l~l~icl~~l~glar~S 211 (406)
T PF04906_consen 182 EYYRWLAYLGLLILDLVICLLGLLGLARQS 211 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 344677777665 44555566666666653
No 390
>PF10814 DUF2562: Protein of unknown function (DUF2562); InterPro: IPR024245 This protein of unknown function appears to be found predominantly in Mycobacterium spp.
Probab=21.47 E-value=4.2e+02 Score=20.98 Aligned_cols=34 Identities=18% Similarity=0.346 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCCccCCCCCCCCc
Q 042996 213 CIMAMLFLIVIGVIAIIIVKLVNPNNKDIRDIPGLAPP 250 (261)
Q Consensus 213 ~i~~~iill~i~Ii~vi~~k~~~~~~~~~~~~~~~~~~ 250 (261)
|++.++...+++. ..+-+++++.+.. +-|+|-||
T Consensus 92 lliagv~~~vLag-GavAfsivRRs~~---~ePsp~pP 125 (133)
T PF10814_consen 92 LLIAGVAVAVLAG-GAVAFSIVRRSSR---PEPSPLPP 125 (133)
T ss_pred hHHHHHHHHHHhc-cceEEEEeecCCC---CCCCCCCC
Confidence 5555543333333 3444556666433 55566666
No 391
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=21.44 E-value=92 Score=23.89 Aligned_cols=23 Identities=17% Similarity=0.242 Sum_probs=10.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhh
Q 042996 5 SISDDLAEINGQITDIFRALSNG 27 (261)
Q Consensus 5 ~~s~~l~~~e~~~~~i~~~i~~~ 27 (261)
...+-|+.+..++..+..++...
T Consensus 22 eVD~fl~~l~~~~~~l~~e~~~L 44 (131)
T PF05103_consen 22 EVDDFLDELAEELERLQRENAEL 44 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444454554444444333
No 392
>COG5052 YOP1 Protein involved in membrane traffic [Intracellular trafficking and secretion]
Probab=21.43 E-value=4.5e+02 Score=22.16 Aligned_cols=37 Identities=16% Similarity=0.161 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Q 042996 178 EQMSRIVNELDSIHFSIKKASQLVKEIGRQVATDKCIM 215 (261)
Q Consensus 178 e~l~~~~~~l~~i~~~L~~s~~~l~~m~rr~~~dK~i~ 215 (261)
+++.+++..+...+..+. +.++++.+.++....|..+
T Consensus 3 ~~l~~is~aM~~l~~t~~-~~piL~~ie~~~~~~k~Y~ 39 (186)
T COG5052 3 GQLVNISVAMLVLDNTLQ-AFPILREIENLYNRYKKYF 39 (186)
T ss_pred hHHHHHHHHHHHHHHHHH-hhHHHHHHHHHhCcchhhH
Confidence 456677777777776664 4577888888876656443
No 393
>PF15330 SIT: SHP2-interacting transmembrane adaptor protein, SIT
Probab=21.41 E-value=1.6e+02 Score=22.55 Aligned_cols=16 Identities=6% Similarity=0.138 Sum_probs=7.0
Q ss_pred HHHHHHHHhhccCCCC
Q 042996 224 GVIAIIIVKLVNPNNK 239 (261)
Q Consensus 224 ~Ii~vi~~k~~~~~~~ 239 (261)
+++-++.|..+++..+
T Consensus 15 l~asl~~wr~~~rq~k 30 (107)
T PF15330_consen 15 LAASLLAWRMKQRQKK 30 (107)
T ss_pred HHHHHHHHHHHhhhcc
Confidence 3334444545444333
No 394
>cd07645 I-BAR_IMD_BAIAP2L1 Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-Like 1. The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. BAIAP2L1 (Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-Like 1) is also known as IRTKS (Insulin Receptor Tyrosine Kinase Substrate). It is widely expressed, serves as a substrate for the insulin receptor, and binds the small GTPase Rac. It plays a role in regulating the actin cytoskeleton and colocalizes with F-actin, cortactin, VASP, and vinculin. BAIAP2L1 expression leads to the formation of short actin bundles, distinct from filopodia-like protrusions induced by the expression of the related protein IRSp53. It contains an N-terminal IMD, an SH3 domain, and a WASP homology 2 (WH2) actin-binding motif at the C-terminus. The IMD domain of
Probab=21.36 E-value=2.4e+02 Score=24.60 Aligned_cols=61 Identities=18% Similarity=0.312 Sum_probs=29.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHhh-hhchhhhcch------hHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042996 6 ISDDLAEINGQITDIFRALSNG-FQKLEKIKDV------NRQSRQLEELTDKMRECKRLIKEFDREVK 66 (261)
Q Consensus 6 ~s~~l~~~e~~~~~i~~~i~~~-~~~L~~~~~~------~~r~~~i~~i~~~l~ea~~ll~qme~Ev~ 66 (261)
|++....++.++..+++..... +..|++--+. ...+....+...+.+.++.+-.+|.-.-+
T Consensus 73 i~ev~r~i~~~le~~lK~Fh~Ell~~LE~k~elD~kyi~a~~Kkyq~E~k~k~dsLeK~~seLKK~RR 140 (226)
T cd07645 73 ISDVHKKLNDSLEENFKKFHREIIAELERKTDLDVKYMTATLKRYQTEHKNKLDSLEKSQADLKKIRR 140 (226)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455555555555544433333 2334331111 22334555566666777777555554443
No 395
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=21.27 E-value=3.3e+02 Score=19.73 Aligned_cols=66 Identities=6% Similarity=0.086 Sum_probs=29.9
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhhhHHHHHH
Q 042996 153 ERSKQVVHETINVGTETAAVLKAQ-TEQMSRIVNELDSIHFSIKKA-SQLVKEIGRQVATDKCIMAML 218 (261)
Q Consensus 153 ~~s~~~~~ete~ig~~il~~L~~Q-re~l~~~~~~l~~i~~~L~~s-~~~l~~m~rr~~~dK~i~~~i 218 (261)
.....++.++...+.....++..+ .+.+..+++.+.+....+... +........-+..+-|-.++|
T Consensus 12 ~d~~~l~~~~~~~~~~~~~~~r~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~V~e~P~~svgi 79 (94)
T PF05957_consen 12 ADLEDLARSAADLAGEKADEARDRAEEALDDARDRAEDAADQAREQAREAAEQTEDYVRENPWQSVGI 79 (94)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHChHHHHHH
Confidence 333344444444444444444332 344555555665555544333 344444444444454544443
No 396
>cd05492 Bromo_ZMYND11 Bromodomain; ZMYND11_like sub-family. ZMYND11 or BS69 is a ubiquitously expressed nuclear protein that has been shown to associate with chromatin. It interacts with chromatin remodeling factors and might play a role in chromatin remodeling and gene expression. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=21.26 E-value=2.1e+02 Score=21.83 Aligned_cols=54 Identities=7% Similarity=0.132 Sum_probs=26.2
Q ss_pred CCcchhhHHHHH--------HHHHHHHHHHHHHhhhhchhhhcchhHHHHHHHHHHHHHHHHHH
Q 042996 1 MDLSSISDDLAE--------INGQITDIFRALSNGFQKLEKIKDVNRQSRQLEELTDKMRECKR 56 (261)
Q Consensus 1 ~~~~~~s~~l~~--------~e~~~~~i~~~i~~~~~~L~~~~~~~~r~~~i~~i~~~l~ea~~ 56 (261)
|||++|.+.|++ +..++.-++.....--+.=.. -..-....++++...|.|++.
T Consensus 47 mDL~tI~~kl~~~~Y~s~~ef~~Dv~LI~~N~~~yNg~~s~--~~~~A~~l~~d~~~el~Ei~~ 108 (109)
T cd05492 47 LDVADIQEKINSEKYTSLEEFKADALLLLHNTAIFHGADSE--QYDAARWLYRDTCHDLRELRL 108 (109)
T ss_pred CcHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCCCCCH--HHHHHHHHHHHHHHHHHHHhc
Confidence 788888876654 333444443211111111000 123445666777777766553
No 397
>PF12352 V-SNARE_C: Snare region anchored in the vesicle membrane C-terminus; PDB: 1GL2_C 2NPS_C.
Probab=21.24 E-value=2.6e+02 Score=18.62 Aligned_cols=57 Identities=11% Similarity=0.169 Sum_probs=34.3
Q ss_pred hhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042996 141 GNRMMDETDQAIERSKQVVHETINVGTETAAVLKAQTEQMSRIVNELDSIHFSIKKA 197 (261)
Q Consensus 141 ~~~~l~~~~~~L~~s~~~~~ete~ig~~il~~L~~Qre~l~~~~~~l~~i~~~L~~s 197 (261)
..+.++++...+..+..++.++-.-=..=-+.|..-+.++..+...+..++..|..-
T Consensus 6 e~~~L~~s~~~~~e~~~~g~~~l~~L~~Qre~L~~~~~kl~~i~~~l~~s~~~l~~I 62 (66)
T PF12352_consen 6 ESDSLQRSHRMADETEEIGAATLEDLRSQREQLKRVRDKLDDIDSNLPKSNSLLKRI 62 (66)
T ss_dssp HHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 444555666666666666655555444444566666667777777777666666543
No 398
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=21.23 E-value=6.3e+02 Score=22.97 Aligned_cols=17 Identities=18% Similarity=0.352 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 042996 48 TDKMRECKRLIKEFDRE 64 (261)
Q Consensus 48 ~~~l~ea~~ll~qme~E 64 (261)
+..-.++..-+..++.|
T Consensus 70 E~e~~~l~~el~~le~e 86 (314)
T PF04111_consen 70 EKEREELDQELEELEEE 86 (314)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 399
>PRK15111 antimicrobial peptide ABC transporter permease SapC; Provisional
Probab=21.14 E-value=1.9e+02 Score=25.92 Aligned_cols=19 Identities=21% Similarity=0.195 Sum_probs=11.0
Q ss_pred HHHHHHhhhhhHHHHHHHH
Q 042996 202 KEIGRQVATDKCIMAMLFL 220 (261)
Q Consensus 202 ~~m~rr~~~dK~i~~~iil 220 (261)
+.+-|+...||..++++++
T Consensus 17 ~~~~~~~~~~~~~~~~~~i 35 (296)
T PRK15111 17 RTAWRKFYSDALAMVGLYG 35 (296)
T ss_pred HHHHHHHhhChHHHHHHHH
Confidence 3445667777766554443
No 400
>PHA02642 C-type lectin-like protein; Provisional
Probab=21.12 E-value=1e+02 Score=26.74 Aligned_cols=28 Identities=21% Similarity=0.370 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHhhccCC--CCccCCCCCCC
Q 042996 221 IVIGVIAIIIVKLVNPN--NKDIRDIPGLA 248 (261)
Q Consensus 221 l~i~Ii~vi~~k~~~~~--~~~~~~~~~~~ 248 (261)
|.++||.++|.-.++.. ..++...+||.
T Consensus 61 ~~~~~~~l~~~~~~~~~~~~~~~k~~~CP~ 90 (216)
T PHA02642 61 ITINLVPIIILMAFKSDTQEPTIKYVTCPK 90 (216)
T ss_pred HHHHHHHHHHHHHhcccccCCCcccCCCCC
Confidence 34444444444344432 22444556654
No 401
>COG4537 ComGC Competence protein ComGC [Intracellular trafficking and secretion]
Probab=21.09 E-value=1.1e+02 Score=23.24 Aligned_cols=43 Identities=19% Similarity=0.302 Sum_probs=21.1
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHhhccC---CCCccCCCCC
Q 042996 204 IGRQVATDKCIMAMLFLIVIGVIAIIIVKLVNP---NNKDIRDIPG 246 (261)
Q Consensus 204 m~rr~~~dK~i~~~iill~i~Ii~vi~~k~~~~---~~~~~~~~~~ 246 (261)
|.+-....|.+..+=++|+++||-++++-|+.+ .+..+++.-|
T Consensus 4 ~~k~~~~~kgFTLvEMLiVLlIISiLlLl~iPNltKq~~~i~~kGc 49 (107)
T COG4537 4 MKKFLKHKKGFTLVEMLIVLLIISILLLLFIPNLTKQKEVIQDKGC 49 (107)
T ss_pred HHHHHHhcccccHHHHHHHHHHHHHHHHHHccchhhhHHHHhcchH
Confidence 333334445555555556666665555545432 2334555444
No 402
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=21.03 E-value=2.8e+02 Score=18.83 Aligned_cols=27 Identities=19% Similarity=0.111 Sum_probs=14.2
Q ss_pred CChHhHHHHHHHHHHHHHHHHHHHHHH
Q 042996 72 NDPETNKMLSEKKQSMVKELNSYVALK 98 (261)
Q Consensus 72 ~~~~~r~~~~~~~~~~~~~l~~~~~~~ 98 (261)
.|++....-..++..|...+..+...+
T Consensus 36 AP~eVve~er~kl~~~~~~~~~l~~~l 62 (66)
T PF10458_consen 36 APEEVVEKEREKLEELEEELEKLEEAL 62 (66)
T ss_dssp S-CCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555566666666666554433
No 403
>PRK15406 oligopeptide ABC transporter permease OppC; Provisional
Probab=21.02 E-value=1.9e+02 Score=26.09 Aligned_cols=33 Identities=15% Similarity=0.378 Sum_probs=14.9
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHhhccC
Q 042996 204 IGRQVATDKCIMAMLFLIVIGVIAIIIVKLVNP 236 (261)
Q Consensus 204 m~rr~~~dK~i~~~iill~i~Ii~vi~~k~~~~ 236 (261)
+.|+...+|..+++++++++.+++.++--++-+
T Consensus 29 ~~~~~~~~~~~~~g~~il~~~~~~a~~~p~~~~ 61 (302)
T PRK15406 29 ARRRFMHNRAAVASLIVLVLIALFVILAPMLSQ 61 (302)
T ss_pred HHHHHhhChHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 445555667655444433333333333344433
No 404
>PF08700 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved in recycling of proteins from endosomes to the late Golgi. Vps51 (also known as Vps67) is a subunit of VFT and interacts with the SNARE Tlg1 [].
Probab=21.00 E-value=3.1e+02 Score=19.26 Aligned_cols=11 Identities=18% Similarity=0.519 Sum_probs=3.9
Q ss_pred HHHHHHHHHHH
Q 042996 47 LTDKMRECKRL 57 (261)
Q Consensus 47 i~~~l~ea~~l 57 (261)
++..+.++..+
T Consensus 63 m~~~~~~l~~~ 73 (87)
T PF08700_consen 63 MENDLSELRNL 73 (87)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 405
>PF13121 DUF3976: Domain of unknown function (DUF3976)
Probab=20.96 E-value=51 Score=20.16 Aligned_cols=9 Identities=44% Similarity=0.995 Sum_probs=4.5
Q ss_pred HHHHHHHHH
Q 042996 221 IVIGVIAII 229 (261)
Q Consensus 221 l~i~Ii~vi 229 (261)
.+++||+.+
T Consensus 30 mfigiivmi 38 (41)
T PF13121_consen 30 MFIGIIVMI 38 (41)
T ss_pred HHHHHHheE
Confidence 455655433
No 406
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.85 E-value=3.2e+02 Score=19.36 Aligned_cols=13 Identities=23% Similarity=0.322 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHH
Q 042996 47 LTDKMRECKRLIK 59 (261)
Q Consensus 47 i~~~l~ea~~ll~ 59 (261)
++.++..|-+.|.
T Consensus 9 LE~KiqqAvdTI~ 21 (79)
T COG3074 9 LEAKVQQAIDTIT 21 (79)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444444
No 407
>PF11239 DUF3040: Protein of unknown function (DUF3040); InterPro: IPR021401 Some members in this family of proteins with unknown function are annotated as membrane proteins however this cannot be confirmed.
Probab=20.79 E-value=1.8e+02 Score=20.69 Aligned_cols=17 Identities=12% Similarity=0.139 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 042996 179 QMSRIVNELDSIHFSIK 195 (261)
Q Consensus 179 ~l~~~~~~l~~i~~~L~ 195 (261)
.++.+...+..-|=.+.
T Consensus 10 ~L~eiEr~L~~~DP~fa 26 (82)
T PF11239_consen 10 RLEEIERQLRADDPRFA 26 (82)
T ss_pred HHHHHHHHHHhcCcHHH
Confidence 45555555544443333
No 408
>PF08196 UL2: UL2 protein; InterPro: IPR013269 This entry contains Orf UL2 of Human cytomegalovirus (HHV-5) (Human herpesvirus 5), which is a short protein of unknown function [].
Probab=20.78 E-value=1.4e+02 Score=19.87 Aligned_cols=19 Identities=26% Similarity=0.548 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHhhcc
Q 042996 217 MLFLIVIGVIAIIIVKLVN 235 (261)
Q Consensus 217 ~iill~i~Ii~vi~~k~~~ 235 (261)
+|+++.+.|-.++|.|+++
T Consensus 38 gif~itlviwt~vwlkllr 56 (60)
T PF08196_consen 38 GIFLITLVIWTVVWLKLLR 56 (60)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444555566788888875
No 409
>PF13268 DUF4059: Protein of unknown function (DUF4059)
Probab=20.65 E-value=1.3e+02 Score=21.25 Aligned_cols=16 Identities=13% Similarity=0.117 Sum_probs=10.5
Q ss_pred HHHHHHhhccCCCCcc
Q 042996 226 IAIIIVKLVNPNNKDI 241 (261)
Q Consensus 226 i~vi~~k~~~~~~~~~ 241 (261)
++.+.|+..++++|+.
T Consensus 25 ~~wi~~Ra~~~~DKT~ 40 (72)
T PF13268_consen 25 GIWILWRALRKKDKTA 40 (72)
T ss_pred HHHHHHHHHHcCCCcH
Confidence 3666777777766654
No 410
>COG5346 Predicted membrane protein [Function unknown]
Probab=20.63 E-value=4.3e+02 Score=20.85 Aligned_cols=13 Identities=31% Similarity=0.123 Sum_probs=6.1
Q ss_pred hhhhhHHHHHHHH
Q 042996 141 GNRMMDETDQAIE 153 (261)
Q Consensus 141 ~~~~l~~~~~~L~ 153 (261)
...++-.+.++|.
T Consensus 47 YnsI~pnt~~rim 59 (136)
T COG5346 47 YNSIYPNTLQRIM 59 (136)
T ss_pred HHhhcCCHHHHHH
Confidence 3445545544443
No 411
>PF13997 YqjK: YqjK-like protein
Probab=20.61 E-value=3.1e+02 Score=19.25 Aligned_cols=37 Identities=8% Similarity=0.067 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042996 170 AAVLKAQTEQMSRIVNELDSIHFSIKKASQLVKEIGR 206 (261)
Q Consensus 170 l~~L~~Qre~l~~~~~~l~~i~~~L~~s~~~l~~m~r 206 (261)
+.+..+||..|-.......++-+-++++-..+..+.+
T Consensus 2 l~qi~qQR~~La~~~~~w~~~ta~~Dr~w~~l~~lr~ 38 (73)
T PF13997_consen 2 LRQIQQQRLDLAANAEPWLEATAPYDRGWQTLRSLRR 38 (73)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHHHHH
Confidence 4567899999999999999999999999998887754
No 412
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=20.30 E-value=5.8e+02 Score=22.18 Aligned_cols=85 Identities=9% Similarity=0.107 Sum_probs=49.4
Q ss_pred HHHHHHHHHHhhhhchhhhc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCChHhHHHHHHHHHHHHHHHHHH
Q 042996 16 QITDIFRALSNGFQKLEKIK-DVNRQSRQLEELTDKMRECKRLIKEFDREVKDIEGRNDPETNKMLSEKKQSMVKELNSY 94 (261)
Q Consensus 16 ~~~~i~~~i~~~~~~L~~~~-~~~~r~~~i~~i~~~l~ea~~ll~qme~Ev~~~~~s~~~~~r~~~~~~~~~~~~~l~~~ 94 (261)
.+...+.+|. .++.+.... ..+.-.....+++.+|...+...+.+.-.+.+ ....+.-.+++.++...+.+++.+
T Consensus 106 ~~~~~l~~l~-~~g~v~~~~~~~~DvT~~y~D~~arl~~l~~~~~rl~~ll~k---a~~~~d~l~ie~~L~~v~~eIe~~ 181 (262)
T PF14257_consen 106 KFDSFLDELS-ELGKVTSRNISSEDVTEQYVDLEARLKNLEAEEERLLELLEK---AKTVEDLLEIERELSRVRSEIEQL 181 (262)
T ss_pred HHHHHHHHHh-ccCceeeeeccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444 344543321 23334455667777777777666665554432 224455567778888888888888
Q ss_pred HHHHHHHhhh
Q 042996 95 VALKKQHQTN 104 (261)
Q Consensus 95 ~~~~k~~~~~ 104 (261)
+..++.+...
T Consensus 182 ~~~~~~l~~~ 191 (262)
T PF14257_consen 182 EGQLKYLDDR 191 (262)
T ss_pred HHHHHHHHHh
Confidence 8776666543
No 413
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=20.29 E-value=1.1e+02 Score=19.71 Aligned_cols=14 Identities=21% Similarity=0.026 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHhhc
Q 042996 221 IVIGVIAIIIVKLV 234 (261)
Q Consensus 221 l~i~Ii~vi~~k~~ 234 (261)
+|.-|.+.||-|+-
T Consensus 17 If~~iGl~IyQkik 30 (49)
T PF11044_consen 17 IFAWIGLSIYQKIK 30 (49)
T ss_pred HHHHHHHHHHHHHH
Confidence 33334466666653
No 414
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=20.23 E-value=1.2e+03 Score=25.76 Aligned_cols=71 Identities=10% Similarity=0.173 Sum_probs=42.8
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHH
Q 042996 135 QQLMDSGNRMMDETDQAIERSKQVVHETINVGTETAAVLKAQTEQMSRIVNELDS------IHFSIKKASQLVKEIG 205 (261)
Q Consensus 135 ~~ll~~~~~~l~~~~~~L~~s~~~~~ete~ig~~il~~L~~Qre~l~~~~~~l~~------i~~~L~~s~~~l~~m~ 205 (261)
++.+..-...+.........+.+.+.+.+.--..+..+|..-...+......+.+ .+..|..+..-+....
T Consensus 576 ~~~~~~~~~el~~~~~~~~~~~~el~~~e~~l~~~~~~l~~~~~eL~~~~~~i~~~~~~~~~~~~L~~~~~~l~~~~ 652 (1311)
T TIGR00606 576 EDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLFDVCGSQDEESDLERLKEEIEKSS 652 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHH
Confidence 3444445555666677777777777777777777777777777777766555542 2224555554444443
No 415
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=20.08 E-value=9.9e+02 Score=24.80 Aligned_cols=76 Identities=9% Similarity=0.135 Sum_probs=33.7
Q ss_pred hHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H----HHHHHHHHHHH---HHHHHhhhhhHHH
Q 042996 145 MDETDQAIERSKQVVH-ETINVGTETAAVLKAQTEQMSRIVNELDSI-H----FSIKKASQLVK---EIGRQVATDKCIM 215 (261)
Q Consensus 145 l~~~~~~L~~s~~~~~-ete~ig~~il~~L~~Qre~l~~~~~~l~~i-~----~~L~~s~~~l~---~m~rr~~~dK~i~ 215 (261)
..++...++.+...+. +|..+-..+...|...++.+...-+.+... + ..+....+.++ ....+.-..||+.
T Consensus 337 v~~~~~~~~~ip~~v~~qt~~~v~~ik~~l~~~~~~i~~~a~~i~~~~~~~~s~~~~~~~~~~~~~~~~~~~y~~yR~~~ 416 (806)
T PF05478_consen 337 VQEGNSRFNDIPEKVQNQTSDVVPPIKRDLDSIGKQIRSQAKQIPNQIDSNISDILNNTERSSRSFEDEYEKYDSYRWIV 416 (806)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHH
Confidence 3444455554433332 444444555555555555555444443332 1 11222222222 2334555667776
Q ss_pred HHHHH
Q 042996 216 AMLFL 220 (261)
Q Consensus 216 ~~iil 220 (261)
.+++.
T Consensus 417 ~lil~ 421 (806)
T PF05478_consen 417 GLILC 421 (806)
T ss_pred HHHHH
Confidence 65544
Done!