Query 042996
Match_columns 261
No_of_seqs 147 out of 667
Neff 7.6
Searched_HMMs 29240
Date Mon Mar 25 20:37:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042996.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042996hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2nps_C Vesicle transport throu 99.8 2.4E-18 8.3E-23 124.8 10.3 79 133-212 3-81 (81)
2 2qyw_A Vesicle transport throu 99.7 5.9E-16 2E-20 117.2 12.2 90 5-98 12-101 (102)
3 3onj_A T-snare VTI1; helix, HA 99.6 1.1E-14 3.7E-19 109.2 12.6 93 8-103 1-94 (97)
4 1vcs_A Vesicle transport throu 99.6 1.6E-15 5.5E-20 114.8 7.4 94 5-103 2-95 (102)
5 1gl2_C VTI1B, vesicle transpor 99.5 1.6E-14 5.6E-19 100.3 8.0 64 143-206 2-65 (65)
6 1n7s_C SNAP-25A; neuronal snar 99.4 2.5E-12 8.5E-17 92.5 11.2 74 133-206 6-79 (79)
7 1nhl_A Synaptosomal-associated 99.0 8.4E-10 2.9E-14 73.5 7.3 52 153-204 3-54 (54)
8 1l4a_C S-SNAP25 fusion protein 98.7 2.3E-08 7.9E-13 72.2 6.6 73 133-205 10-82 (83)
9 3b5n_C Protein transport prote 98.6 3.5E-07 1.2E-11 63.9 10.3 62 144-205 6-67 (70)
10 3hd7_B Syntaxin-1A; membrane p 98.5 6.6E-06 2.2E-10 62.5 14.1 83 144-226 15-100 (109)
11 2nps_D Syntaxin-6; vesicle fus 97.5 0.00048 1.7E-08 49.3 7.7 70 141-210 10-79 (82)
12 3hd7_A Vesicle-associated memb 97.4 0.0056 1.9E-07 44.6 13.0 63 149-211 4-66 (91)
13 1gl2_D Syntaxin 8, vesicle tra 97.4 0.00067 2.3E-08 46.3 7.4 62 144-205 3-64 (65)
14 1sfc_D Protein (SNAP-25B), pro 97.2 0.002 6.9E-08 46.6 8.8 65 142-206 21-85 (87)
15 3b5n_D Protein transport prote 97.2 0.0026 9E-08 43.3 8.8 60 144-203 4-63 (64)
16 1n7s_D SNAP-25A; neuronal snar 97.2 0.0037 1.3E-07 42.7 9.2 61 144-204 4-64 (66)
17 1l4a_D S-SNAP25 fusion protein 97.0 0.0032 1.1E-07 45.5 7.6 64 143-206 23-86 (87)
18 1jth_B Syntaxin 1A; coiled-coi 95.8 0.11 3.9E-06 36.2 10.0 63 145-207 5-67 (77)
19 1dn1_B Syntaxin 1A, syntaxin b 94.9 0.7 2.4E-05 39.9 14.0 71 144-214 194-267 (267)
20 1n7s_B Syntaxin 1A; neuronal s 94.8 0.39 1.3E-05 32.6 9.8 60 144-203 6-65 (68)
21 3b5n_B Protein SSO1; snare com 94.8 0.42 1.4E-05 32.6 9.9 61 145-205 5-65 (69)
22 2kog_A Vesicle-associated memb 94.8 0.0029 1E-07 48.5 -1.3 73 148-220 31-103 (119)
23 2nps_B Syntaxin 13, vesicle-as 94.7 0.39 1.3E-05 32.9 9.7 59 149-207 5-63 (71)
24 1gl2_B Syntaxin 7; membrane pr 94.5 0.38 1.3E-05 32.4 9.0 57 147-203 6-62 (65)
25 3vkg_A Dynein heavy chain, cyt 94.0 11 0.00038 43.2 27.5 66 141-206 2019-2084(3245)
26 1sfc_B Protein (syntaxin 1A), 93.6 0.9 3.1E-05 32.0 10.0 63 144-206 15-77 (83)
27 2xhe_B Syntaxin1; exocytosis, 93.2 1.3 4.4E-05 38.3 12.3 60 145-204 212-271 (279)
28 3hd7_A Vesicle-associated memb 91.9 2.5 8.7E-05 30.3 12.5 71 144-220 6-79 (91)
29 2avr_X Adhesion A; antiparalle 83.2 13 0.00043 28.0 12.8 96 2-105 3-98 (119)
30 3vkg_A Dynein heavy chain, cyt 82.8 37 0.0013 39.1 17.1 63 4-66 1902-1969(3245)
31 3c98_B Syntaxin-1A; protein co 82.2 3.8 0.00013 34.3 7.4 74 141-214 203-279 (279)
32 4aj5_A SKA1, spindle and kinet 80.2 14 0.00046 26.4 10.1 59 7-66 3-61 (91)
33 3etw_A Adhesin A; antiparallel 78.5 19 0.00065 27.1 12.9 97 2-106 3-99 (119)
34 3hd7_B Syntaxin-1A; membrane p 77.9 18 0.00062 26.5 13.3 56 173-229 51-106 (109)
35 2jp3_A FXYD domain-containing 72.4 1.5 5.2E-05 29.5 1.5 33 218-250 26-58 (67)
36 2kog_A Vesicle-associated memb 69.1 6.3 0.00022 29.7 4.5 77 144-226 34-113 (119)
37 4fi5_A Nucleoprotein; structur 68.6 20 0.00069 26.5 7.0 18 82-99 69-86 (113)
38 2w83_C C-JUN-amino-terminal ki 68.0 27 0.00091 24.1 7.5 21 1-21 2-22 (77)
39 2kv5_A FST, putative uncharact 67.0 5.5 0.00019 23.0 2.8 24 214-237 4-28 (33)
40 3ghg_A Fibrinogen alpha chain; 64.7 54 0.0018 30.8 10.6 28 6-33 51-78 (562)
41 2jpw_A Troponin I, cardiac mus 64.0 1.2 4.1E-05 25.0 -0.3 18 238-255 5-22 (32)
42 2k48_A Nucleoprotein; viral pr 60.8 31 0.0011 25.2 6.7 24 8-31 35-58 (107)
43 2l8s_A Integrin alpha-1; trans 59.9 16 0.00054 23.5 4.4 17 221-237 21-39 (54)
44 3f6n_A Virion-associated prote 58.1 14 0.00048 27.7 4.5 55 1-55 2-61 (129)
45 1q90_R Cytochrome B6-F complex 57.8 21 0.00071 22.5 4.6 33 203-236 8-40 (49)
46 1m1j_B Fibrinogen beta chain; 56.9 1.2E+02 0.0039 28.2 11.5 27 7-33 88-114 (464)
47 2ic6_A Nucleocapsid protein; h 55.0 43 0.0015 23.2 6.3 23 9-31 6-28 (78)
48 1vp7_A Exodeoxyribonuclease VI 54.6 51 0.0018 23.9 7.0 53 10-62 32-85 (100)
49 1sfc_A VAMP 2, protein (synapt 54.1 57 0.0019 23.3 9.3 60 148-207 28-87 (96)
50 2k9j_B Integrin beta-3; transm 53.9 14 0.00048 22.5 3.3 14 221-234 21-34 (43)
51 2knc_B Integrin beta-3; transm 53.7 12 0.0004 26.1 3.3 14 221-234 22-35 (79)
52 2knc_A Integrin alpha-IIB; tra 51.5 23 0.00077 22.8 4.1 17 221-237 24-42 (54)
53 2p2u_A HOST-nuclease inhibitor 50.9 90 0.0031 24.6 10.2 64 38-116 19-82 (171)
54 2zxe_G FXYD10, phospholemman-l 50.7 6.6 0.00022 26.9 1.5 29 221-249 31-59 (74)
55 2jo1_A Phospholemman; FXYD1, N 48.4 16 0.00054 24.8 3.1 16 218-233 25-40 (72)
56 3b5n_A Synaptobrevin homolog 1 47.6 54 0.0019 21.1 9.7 46 150-195 2-47 (61)
57 3iox_A AGI/II, PA; alpha helix 47.5 1.8E+02 0.0061 27.1 11.8 15 6-20 7-21 (497)
58 3j1r_A Archaeal adhesion filam 46.7 26 0.00088 18.9 3.1 13 221-233 11-24 (26)
59 1deq_A Fibrinogen (alpha chain 46.4 1.3E+02 0.0045 27.0 9.6 28 6-33 54-81 (390)
60 1fjk_A Cardiac phospholamban; 46.3 31 0.001 21.3 3.9 11 204-214 23-33 (52)
61 3gwk_C SAG1039, putative uncha 45.8 71 0.0024 22.0 8.0 20 46-65 26-45 (98)
62 2pjw_V Vacuolar protein sortin 45.5 40 0.0014 24.0 5.1 44 15-58 33-77 (91)
63 1gd2_E Transcription factor PA 45.5 60 0.002 21.9 5.8 26 39-64 26-51 (70)
64 2jwa_A Receptor tyrosine-prote 45.1 31 0.0011 21.2 3.9 10 225-234 29-38 (44)
65 3ghg_A Fibrinogen alpha chain; 43.7 1.7E+02 0.0059 27.4 10.3 42 52-105 113-154 (562)
66 3zbh_A ESXA; unknown function, 43.3 76 0.0026 21.6 6.9 25 76-100 50-74 (99)
67 1n7s_A Vesicle-associated memb 42.9 66 0.0023 20.8 9.8 46 149-194 3-48 (63)
68 3gwk_C SAG1039, putative uncha 42.4 81 0.0028 21.7 7.7 62 37-98 10-71 (98)
69 2k1a_A Integrin alpha-IIB; sin 42.4 45 0.0015 20.2 4.2 13 221-233 22-34 (42)
70 3zbh_A ESXA; unknown function, 41.7 81 0.0028 21.5 9.1 21 79-99 60-80 (99)
71 1ic2_A Tropomyosin alpha chain 41.2 83 0.0028 21.5 10.2 56 38-105 16-71 (81)
72 2pjw_H Uncharacterized protein 38.4 60 0.002 22.9 5.1 48 14-61 34-82 (88)
73 1k1f_A Breakpoint cluster regi 37.2 45 0.0015 22.3 3.9 26 42-67 26-51 (72)
74 1t3j_A Mitofusin 1; coiled coi 37.2 1.1E+02 0.0039 21.9 6.8 18 79-96 75-92 (96)
75 3tnu_A Keratin, type I cytoske 34.3 1.4E+02 0.0049 22.2 9.7 14 51-64 40-53 (131)
76 1xaw_A Occludin; coiled-coil, 33.7 1.5E+02 0.0052 22.7 7.1 30 73-103 108-137 (140)
77 3oja_B Anopheles plasmodium-re 33.7 2.9E+02 0.0098 25.5 11.6 81 2-96 499-579 (597)
78 4ioe_A Secreted protein ESXB; 33.4 1.1E+02 0.0038 20.6 10.7 64 36-99 10-73 (93)
79 2ic9_A Nucleocapsid protein; h 33.0 1.3E+02 0.0046 21.5 6.8 20 9-28 6-25 (96)
80 3ghg_B Fibrinogen beta chain; 32.5 1.5E+02 0.0053 27.3 8.1 51 7-59 83-133 (461)
81 1afo_A Glycophorin A; integral 32.4 43 0.0015 19.9 2.9 17 217-233 18-34 (40)
82 1l4a_A Synaptobrevin; snare, s 32.2 88 0.003 21.3 5.1 45 150-194 15-59 (80)
83 2ks1_B Epidermal growth factor 32.1 59 0.002 19.9 3.6 11 225-235 26-36 (44)
84 2dnx_A Syntaxin-12; snare, HAB 32.1 1.6E+02 0.0054 22.0 7.9 62 2-63 11-76 (130)
85 3mq9_A Bone marrow stromal ant 32.1 2.8E+02 0.0095 24.8 10.7 26 39-64 394-419 (471)
86 3na7_A HP0958; flagellar bioge 31.8 2.2E+02 0.0076 23.6 19.6 21 44-64 34-54 (256)
87 2vs0_A Virulence factor ESXA; 31.5 1.2E+02 0.0041 20.4 8.3 19 47-65 25-43 (97)
88 2nps_A VAMP-4, vesicle-associa 30.8 1.2E+02 0.0041 20.3 8.1 57 151-207 9-65 (74)
89 4fla_A Regulation of nuclear P 30.7 1.9E+02 0.0064 22.4 11.1 28 38-65 68-95 (152)
90 4ev6_A Magnesium transport pro 29.8 2.7E+02 0.0092 24.0 17.1 43 50-99 172-214 (339)
91 3fav_A ESAT-6-like protein ESX 28.5 1.5E+02 0.005 20.5 9.4 62 43-104 15-76 (101)
92 3nmd_A CGMP dependent protein 28.4 1.4E+02 0.0048 20.2 7.6 15 85-99 50-64 (72)
93 2l6w_A Beta-type platelet-deri 33.8 13 0.00043 22.3 0.0 10 227-236 26-35 (39)
94 3fav_B ESAT-6, 6 kDa early sec 27.6 1.4E+02 0.0049 20.1 7.7 59 45-103 15-73 (94)
95 3tnu_B Keratin, type II cytosk 27.5 1.9E+02 0.0064 21.4 11.2 19 7-25 35-53 (129)
96 4e81_A Chaperone protein DNAK; 27.1 2.5E+02 0.0086 22.8 8.5 37 52-88 149-185 (219)
97 1gl2_A Endobrevin; membrane pr 26.9 1.3E+02 0.0046 19.5 7.2 45 149-193 8-52 (65)
98 3ol1_A Vimentin; structural ge 26.8 1.9E+02 0.0065 21.2 10.3 13 80-92 88-100 (119)
99 1t3j_A Mitofusin 1; coiled coi 26.6 1.8E+02 0.0061 20.8 8.2 20 47-66 45-64 (96)
100 3qb5_K Translin-associated pro 26.0 2.9E+02 0.0099 23.6 8.5 52 16-67 55-110 (290)
101 1i6z_A BAG-family molecular ch 25.8 2.2E+02 0.0075 21.7 7.8 63 41-105 62-126 (135)
102 2gsm_B Cytochrome C oxidase su 25.1 80 0.0028 26.8 4.6 13 222-234 47-59 (262)
103 1svf_B Protein (fusion glycopr 25.1 71 0.0024 18.8 3.0 24 180-203 14-37 (38)
104 2nps_B Syntaxin 13, vesicle-as 24.9 1.5E+02 0.0052 19.5 8.2 29 38-66 2-30 (71)
105 2vs0_A Virulence factor ESXA; 24.4 1.6E+02 0.0056 19.7 6.9 64 37-100 8-71 (97)
106 2dnx_A Syntaxin-12; snare, HAB 24.3 2.2E+02 0.0075 21.1 14.5 62 8-69 10-75 (130)
107 2iub_A CORA, divalent cation t 23.9 3.6E+02 0.012 23.4 17.3 47 47-100 193-239 (363)
108 2oez_A UPF0289 protein VP2528; 23.7 1.2E+02 0.0042 25.5 5.4 54 164-217 59-122 (247)
109 3onj_A T-snare VTI1; helix, HA 23.4 2E+02 0.0067 20.3 7.3 58 3-61 3-60 (97)
110 3tul_A Cell invasion protein S 22.5 2.7E+02 0.0093 21.5 9.1 55 44-100 71-125 (158)
111 3u1c_A Tropomyosin alpha-1 cha 21.5 2.2E+02 0.0077 20.2 10.4 50 38-99 19-68 (101)
112 2w1k_A Putative sortase; pilus 21.3 20 0.00068 30.5 0.0 25 213-237 225-249 (252)
113 4i0x_B ESAT-6-like protein MAB 21.2 2.1E+02 0.0073 19.8 9.2 57 47-103 23-81 (103)
114 3trt_A Vimentin; cytoskeleton, 21.1 1.9E+02 0.0064 19.2 7.8 23 43-65 50-72 (77)
115 2dw3_A Intrinsic membrane prot 20.9 1.5E+02 0.0053 20.2 4.4 9 239-247 56-64 (77)
116 3hnw_A Uncharacterized protein 20.9 2.8E+02 0.0094 21.0 7.2 22 82-103 110-131 (138)
117 4afl_A P29ING4, inhibitor of g 20.3 2.3E+02 0.008 19.9 9.6 50 8-57 25-77 (104)
No 1
>2nps_C Vesicle transport through interaction with T- snares homolog 1A; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=99.77 E-value=2.4e-18 Score=124.83 Aligned_cols=79 Identities=19% Similarity=0.357 Sum_probs=75.2
Q ss_pred hHHHHHHhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 042996 133 TNQQLMDSGNRMMDETDQAIERSKQVVHETINVGTETAAVLKAQTEQMSRIVNELDSIHFSIKKASQLVKEIGRQVATDK 212 (261)
Q Consensus 133 ~~~~ll~~~~~~l~~~~~~L~~s~~~~~ete~ig~~il~~L~~Qre~l~~~~~~l~~i~~~L~~s~~~l~~m~rr~~~dK 212 (261)
+|++|+. +++.+++++++|.++.+++.|||+||.+|+.+|+.|||+|.++++.++++++++++|.++|+.|.||+++||
T Consensus 3 qR~~Ll~-~t~~L~rt~~~L~~s~r~~~ETE~iG~~il~~L~~QRE~l~~~~~~l~~~d~~l~~s~k~l~~M~rr~~~nK 81 (81)
T 2nps_C 3 MRAHLLD-NTERLERSSRRLEAGYQIAVETEQIGQEMLENLSHDRERIQRARERLRETDANLGKSSRILTGMLRRIIQNR 81 (81)
T ss_dssp TTTHHHH-HHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--
T ss_pred HHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhCC
Confidence 6778887 999999999999999999999999999999999999999999999999999999999999999999999987
No 2
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=99.67 E-value=5.9e-16 Score=117.16 Aligned_cols=90 Identities=11% Similarity=0.192 Sum_probs=82.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhhchhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCChHhHHHHHHHH
Q 042996 5 SISDDLAEINGQITDIFRALSNGFQKLEKIKDVNRQSRQLEELTDKMRECKRLIKEFDREVKDIEGRNDPETNKMLSEKK 84 (261)
Q Consensus 5 ~~s~~l~~~e~~~~~i~~~i~~~~~~L~~~~~~~~r~~~i~~i~~~l~ea~~ll~qme~Ev~~~~~s~~~~~r~~~~~~~ 84 (261)
+||+.|++||++|+.++.+|...+..+.....+++|+..+++++..|+||+++|.||++|++++ |++.|..|..++
T Consensus 12 ~mSelFe~YE~df~~l~~~i~~kl~~i~~~~~~e~rk~~i~~ie~~ldEA~eLl~qMelE~r~~----p~s~R~~~~~kl 87 (102)
T 2qyw_A 12 ASSEHFEKLHEIFRGLLEDLQGVPERLLGTAGTEEKKKLVRDFDEKQQEANETLAEMEEELRYA----PLTFRNPMMSKL 87 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS----CHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----CHHHHHHHHHHH
Confidence 4689999999999999999999999987654569999999999999999999999999999855 688999999999
Q ss_pred HHHHHHHHHHHHHH
Q 042996 85 QSMVKELNSYVALK 98 (261)
Q Consensus 85 ~~~~~~l~~~~~~~ 98 (261)
+.|+++|+++++++
T Consensus 88 r~Yk~dL~~lk~el 101 (102)
T 2qyw_A 88 RNYRKDLAKLHREV 101 (102)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhc
Confidence 99999999988664
No 3
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=99.60 E-value=1.1e-14 Score=109.22 Aligned_cols=93 Identities=12% Similarity=0.141 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhchhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCChHhHHHHHHHHHHH
Q 042996 8 DDLAEINGQITDIFRALSNGFQKLEKIKDVNRQSRQLEELTDKMRECKRLIKEFDREVKDIEGRNDPETNKMLSEKKQSM 87 (261)
Q Consensus 8 ~~l~~~e~~~~~i~~~i~~~~~~L~~~~~~~~r~~~i~~i~~~l~ea~~ll~qme~Ev~~~~~s~~~~~r~~~~~~~~~~ 87 (261)
+.|++||++|+.++.+|...+..+..+ .|++|+..+++++..++||+++|.||++|++++. .|++.|..|..+++.|
T Consensus 1 ~lF~~YE~df~~~~~~i~~~l~~~~~~-~ge~Rk~~i~~ie~~ldEA~ell~qMelE~~~~~--~p~~~R~~~~~klr~Y 77 (97)
T 3onj_A 1 SLLISYESDFKTTLEQAKASLAEAPSQ-PLSQRNTTLKHVEQQQDELFDLLDQMDVEVNNSI--GDASERATYKAKLREW 77 (97)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHGGGS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHhcc-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHH
Confidence 479999999999999999999999875 5789999999999999999999999999999762 2578899999999999
Q ss_pred HHHHHH-HHHHHHHHhh
Q 042996 88 VKELNS-YVALKKQHQT 103 (261)
Q Consensus 88 ~~~l~~-~~~~~k~~~~ 103 (261)
++++++ +++.++++.+
T Consensus 78 k~dl~~~lk~~lk~l~d 94 (97)
T 3onj_A 78 KKTIQSDIKRPLQSLVD 94 (97)
T ss_dssp HHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhh
Confidence 999999 9999887764
No 4
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=99.60 E-value=1.6e-15 Score=114.78 Aligned_cols=94 Identities=14% Similarity=0.299 Sum_probs=84.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhhchhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCChHhHHHHHHHH
Q 042996 5 SISDDLAEINGQITDIFRALSNGFQKLEKIKDVNRQSRQLEELTDKMRECKRLIKEFDREVKDIEGRNDPETNKMLSEKK 84 (261)
Q Consensus 5 ~~s~~l~~~e~~~~~i~~~i~~~~~~L~~~~~~~~r~~~i~~i~~~l~ea~~ll~qme~Ev~~~~~s~~~~~r~~~~~~~ 84 (261)
++|+.|++||++|+.++.+|...+..+..+ .+++|+..+++++..|+||+++|.||++|++++ |++.|..|..++
T Consensus 2 ~sSelFe~YE~df~~l~~~i~~kl~~i~~~-~geerk~~i~~ie~~l~EA~ell~qMelE~r~~----p~~~R~~~~~kl 76 (102)
T 1vcs_A 2 SSGSSGEGYEQDFAVLTAEITSKIARVPRL-PPDEKKQMVANVEKQLEEARELLEQMDLEVREI----PPQSRGMYSNRM 76 (102)
T ss_dssp CCCCCCCCSHHHHHHHHHHHHHHHHHGGGS-CTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTS----CTTTHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHhhcc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----CHHhHHHHHHHH
Confidence 457899999999999999999999998875 578999999999999999999999999999865 567789999999
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 042996 85 QSMVKELNSYVALKKQHQT 103 (261)
Q Consensus 85 ~~~~~~l~~~~~~~k~~~~ 103 (261)
+.|+++|++++++++.+..
T Consensus 77 r~Yk~dL~~lk~elk~~~~ 95 (102)
T 1vcs_A 77 RSYKQEMGKLETDFKRSRI 95 (102)
T ss_dssp HHHHHHHHHHHHHTHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 9999999999988776543
No 5
>1gl2_C VTI1B, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=99.54 E-value=1.6e-14 Score=100.28 Aligned_cols=64 Identities=28% Similarity=0.446 Sum_probs=58.4
Q ss_pred hhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042996 143 RMMDETDQAIERSKQVVHETINVGTETAAVLKAQTEQMSRIVNELDSIHFSIKKASQLVKEIGR 206 (261)
Q Consensus 143 ~~l~~~~~~L~~s~~~~~ete~ig~~il~~L~~Qre~l~~~~~~l~~i~~~L~~s~~~l~~m~r 206 (261)
+++++++++|.++.+++.|||++|.+|+.+|+.|||+|.++++++++++++|++|.++|+.|.|
T Consensus 2 ~rL~~t~~~l~~s~ri~~ETE~iG~~~l~~L~~QREql~~t~~~l~~~d~~l~~s~k~L~~m~R 65 (65)
T 1gl2_C 2 SHMNRATQSIERSHRIATETDQIGTEIIEELGEQRDQLERTKSRLVNTNENLSKSRKILRSMSR 65 (65)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHhHHHhHHhHHHHHHHHHHhhcC
Confidence 4688999999999999999999999999999999999999999999999999999999999976
No 6
>1n7s_C SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1sfc_C 1urq_C 3hd7_C* 3hd9_C 3ipd_C 3rk2_C 3rk3_C 3rl0_C 1kil_C 1jth_A
Probab=99.41 E-value=2.5e-12 Score=92.54 Aligned_cols=74 Identities=24% Similarity=0.442 Sum_probs=69.4
Q ss_pred hHHHHHHhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042996 133 TNQQLMDSGNRMMDETDQAIERSKQVVHETINVGTETAAVLKAQTEQMSRIVNELDSIHFSIKKASQLVKEIGR 206 (261)
Q Consensus 133 ~~~~ll~~~~~~l~~~~~~L~~s~~~~~ete~ig~~il~~L~~Qre~l~~~~~~l~~i~~~L~~s~~~l~~m~r 206 (261)
..+.+..++..+++++++++.++.+++.||+++|.+|+.+|+.|+|+|.+++..+++++++|++|.++|+.|.+
T Consensus 6 ~~q~l~~~~~~~~~~s~~s~~~~l~~a~Ete~~G~~Tl~~L~~Q~Eql~r~~~~ld~i~~~l~~a~k~L~~m~k 79 (79)
T 1n7s_C 6 ELEEMQRRADQLADESLESTRRMLQLVEESKDAGIRTLVMLDEQGEQLDRVEEGMNHINQDMKEAEKNLKDLGK 79 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHhHHHHHHHHHhhhcC
Confidence 34556677899999999999999999999999999999999999999999999999999999999999999974
No 7
>1nhl_A Synaptosomal-associated protein 23; snare, coiled-coil, protein transport; 2.30A {Homo sapiens} SCOP: h.1.15.1
Probab=99.02 E-value=8.4e-10 Score=73.54 Aligned_cols=52 Identities=27% Similarity=0.435 Sum_probs=49.7
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042996 153 ERSKQVVHETINVGTETAAVLKAQTEQMSRIVNELDSIHFSIKKASQLVKEI 204 (261)
Q Consensus 153 ~~s~~~~~ete~ig~~il~~L~~Qre~l~~~~~~l~~i~~~L~~s~~~l~~m 204 (261)
.++.+++.|++++|..|+.+|+.|+|+|.++++.++++++++++|.++|+.|
T Consensus 3 ~~~~~l~~ese~~g~~Tl~~L~~QgEql~r~~~~ld~i~~~l~~a~k~L~~m 54 (54)
T 1nhl_A 3 RRILGLAIESQDAGIKTITMLDEQKEQLNRIEEGLDQINKDMRETEKTLTEL 54 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHhHHHHHHhHHHHHHHHHhcC
Confidence 5788999999999999999999999999999999999999999999999864
No 8
>1l4a_C S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=98.73 E-value=2.3e-08 Score=72.16 Aligned_cols=73 Identities=23% Similarity=0.358 Sum_probs=64.9
Q ss_pred hHHHHHHhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042996 133 TNQQLMDSGNRMMDETDQAIERSKQVVHETINVGTETAAVLKAQTEQMSRIVNELDSIHFSIKKASQLVKEIG 205 (261)
Q Consensus 133 ~~~~ll~~~~~~l~~~~~~L~~s~~~~~ete~ig~~il~~L~~Qre~l~~~~~~l~~i~~~L~~s~~~l~~m~ 205 (261)
..+.+..+...+.+.+..+..++.+++.+++++|..++..|+.|.|+|.+++..++.|+.++..|.+.|+.|.
T Consensus 10 ~~q~l~~~~~~~~~esl~STrr~l~l~~es~~~g~~Tl~~L~~QgEQL~rie~~ld~I~~dl~~Aek~L~~L~ 82 (83)
T 1l4a_C 10 ELEEIQQQCNQVTDDSLESTRRMLNMCEESKEAGIRTLVMLDEQGEQLDRIEEGLDQINQDMKDAEKNLEGME 82 (83)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGCTTC--
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3445556677788999999999999999999999999999999999999999999999999999999887664
No 9
>3b5n_C Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=98.64 E-value=3.5e-07 Score=63.87 Aligned_cols=62 Identities=19% Similarity=0.283 Sum_probs=58.6
Q ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042996 144 MMDETDQAIERSKQVVHETINVGTETAAVLKAQTEQMSRIVNELDSIHFSIKKASQLVKEIG 205 (261)
Q Consensus 144 ~l~~~~~~L~~s~~~~~ete~ig~~il~~L~~Qre~l~~~~~~l~~i~~~L~~s~~~l~~m~ 205 (261)
+.+++..+-.++.+++.+++++|..++..|+.|.|+|.+++..++.++.++..|.+.++.+.
T Consensus 6 ~~~esl~STrr~L~~a~e~e~~g~~Tl~~L~~QgEqL~rtE~~ld~i~~~~k~aek~l~~Lk 67 (70)
T 3b5n_C 6 TKQSSVASTRNTLKMAQDAERAGMNTLGMLGHQSEQLNNVEGNLDLMKVQNKVADEKVAELK 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45678889999999999999999999999999999999999999999999999999999875
No 10
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=98.46 E-value=6.6e-06 Score=62.48 Aligned_cols=83 Identities=14% Similarity=0.191 Sum_probs=67.2
Q ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhhhhhHHHHHHHH
Q 042996 144 MMDETDQAIERSKQVVHETINVGTETAAVLKAQTEQMSRIVNELDSIHFSIKKASQLVKE---IGRQVATDKCIMAMLFL 220 (261)
Q Consensus 144 ~l~~~~~~L~~s~~~~~ete~ig~~il~~L~~Qre~l~~~~~~l~~i~~~L~~s~~~l~~---m~rr~~~dK~i~~~iil 220 (261)
-..+-...+.+.++.+.|..++..+...-+..|.+.++++..++..+..++..|++.|+. +.++....+|+++++++
T Consensus 15 ~i~eR~~eI~~Ie~~I~eL~~iF~dla~lV~eQge~Id~Ie~nv~~a~~~v~~g~~eL~kA~~yqk~~rkk~~i~l~~~~ 94 (109)
T 3hd7_B 15 EIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARRKKIMIIICCV 94 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcceehHHHHH
Confidence 456677889999999999999999999999999999999999999999999999998854 55556665565555444
Q ss_pred HHHHHH
Q 042996 221 IVIGVI 226 (261)
Q Consensus 221 l~i~Ii 226 (261)
++++|+
T Consensus 95 i~~~i~ 100 (109)
T 3hd7_B 95 ILGIII 100 (109)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 343333
No 11
>2nps_D Syntaxin-6; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Homo sapiens}
Probab=97.46 E-value=0.00048 Score=49.34 Aligned_cols=70 Identities=16% Similarity=0.223 Sum_probs=58.2
Q ss_pred hhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 042996 141 GNRMMDETDQAIERSKQVVHETINVGTETAAVLKAQTEQMSRIVNELDSIHFSIKKASQLVKEIGRQVAT 210 (261)
Q Consensus 141 ~~~~l~~~~~~L~~s~~~~~ete~ig~~il~~L~~Qre~l~~~~~~l~~i~~~L~~s~~~l~~m~rr~~~ 210 (261)
....+.+.++.|......+....++|.+|.++|..|.+.|+++.+.++.+.+.|..+++-+..+.++...
T Consensus 10 Q~~~~~eQD~~Ld~L~~~v~~LK~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~L~~~~~r~~~~~~~~~~ 79 (82)
T 2nps_D 10 GNNMGRMQDEQLELVSGSIGVLKNMSQRIGGELEEQAVMLEDFSHELESTQSRLDNVMKKLAKVSHMTSD 79 (82)
T ss_dssp --------CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 3445667788899999999999999999999999999999999999999999999999999999887543
No 12
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=97.41 E-value=0.0056 Score=44.64 Aligned_cols=63 Identities=8% Similarity=0.164 Sum_probs=48.4
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 042996 149 DQAIERSKQVVHETINVGTETAAVLKAQTEQMSRIVNELDSIHFSIKKASQLVKEIGRQVATD 211 (261)
Q Consensus 149 ~~~L~~s~~~~~ete~ig~~il~~L~~Qre~l~~~~~~l~~i~~~L~~s~~~l~~m~rr~~~d 211 (261)
++.|...+..++|+..+-.+-++.+-+..|.|+...++.++..+.-..=.+.=+.+.|++.-.
T Consensus 4 ~d~l~~vq~ev~evk~iM~~NI~kvL~RgekL~~L~~kt~~L~~~s~~F~~~A~~l~rkmwwk 66 (91)
T 3hd7_A 4 MRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWWK 66 (91)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777888888888888888899999999999999888887777665555556666665444
No 13
>1gl2_D Syntaxin 8, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=97.39 E-value=0.00067 Score=46.32 Aligned_cols=62 Identities=16% Similarity=0.310 Sum_probs=51.8
Q ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042996 144 MMDETDQAIERSKQVVHETINVGTETAAVLKAQTEQMSRIVNELDSIHFSIKKASQLVKEIG 205 (261)
Q Consensus 144 ~l~~~~~~L~~s~~~~~ete~ig~~il~~L~~Qre~l~~~~~~l~~i~~~L~~s~~~l~~m~ 205 (261)
.+.+.++.|......+....++|.+|.++|..|.+.|.++.+.++.+++.|..+.+-+..+.
T Consensus 3 ~~~eqD~~Ld~L~~~v~~lk~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~l~~~~~rl~~l~ 64 (65)
T 1gl2_D 3 HMQEQDAGLDALSSIISRQKQMGQEIGNELDEQNEIIDDLANLVENTDEKLRTEARRVTLVD 64 (65)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 46678888999999999999999999999999999999999999999999999998877664
No 14
>1sfc_D Protein (SNAP-25B), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=97.23 E-value=0.002 Score=46.59 Aligned_cols=65 Identities=18% Similarity=0.280 Sum_probs=59.4
Q ss_pred hhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042996 142 NRMMDETDQAIERSKQVVHETINVGTETAAVLKAQTEQMSRIVNELDSIHFSIKKASQLVKEIGR 206 (261)
Q Consensus 142 ~~~l~~~~~~L~~s~~~~~ete~ig~~il~~L~~Qre~l~~~~~~l~~i~~~L~~s~~~l~~m~r 206 (261)
.....+.+..|......+....++|.+|..+|..|.+.|.++..+++.+++.|..+++-++.+.+
T Consensus 21 d~~e~eqD~~Ld~Ls~~v~rLk~la~~ig~Eld~Qn~~Ld~i~~~~D~~~~rl~~~~~rl~~ll~ 85 (87)
T 1sfc_D 21 DARENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATKMLG 85 (87)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhh
Confidence 34566888999999999999999999999999999999999999999999999999998887654
No 15
>3b5n_D Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae}
Probab=97.22 E-value=0.0026 Score=43.30 Aligned_cols=60 Identities=17% Similarity=0.273 Sum_probs=54.7
Q ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042996 144 MMDETDQAIERSKQVVHETINVGTETAAVLKAQTEQMSRIVNELDSIHFSIKKASQLVKE 203 (261)
Q Consensus 144 ~l~~~~~~L~~s~~~~~ete~ig~~il~~L~~Qre~l~~~~~~l~~i~~~L~~s~~~l~~ 203 (261)
.-++....|.....++.....+|.++..+|..|.++|.++..+++.++..+..+++-|..
T Consensus 4 ~E~e~D~nLd~l~~~~~rlk~ma~~mg~Eid~QN~~ldrI~~k~d~~d~ri~~~~~Rl~~ 63 (64)
T 3b5n_D 4 MELEIDRNLDQIQQVSNRLKKMALTTGKELDSQQKRLNNIEESTDDLDINLHMNTNRLAG 63 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 445678889999999999999999999999999999999999999999999999887654
No 16
>1n7s_D SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_D 3rk3_D 3rl0_D 1kil_D 3hd7_D* 3hd9_D 3ipd_D 1urq_D 1xtg_B
Probab=97.17 E-value=0.0037 Score=42.65 Aligned_cols=61 Identities=20% Similarity=0.319 Sum_probs=55.6
Q ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042996 144 MMDETDQAIERSKQVVHETINVGTETAAVLKAQTEQMSRIVNELDSIHFSIKKASQLVKEI 204 (261)
Q Consensus 144 ~l~~~~~~L~~s~~~~~ete~ig~~il~~L~~Qre~l~~~~~~l~~i~~~L~~s~~~l~~m 204 (261)
...+....|......+.....+|.+|..+|..|.+.|.++..+++.+++.|..+++-++.+
T Consensus 4 ~e~eqD~~Ld~L~~~v~~lk~la~~ig~El~~Qn~~Ld~l~~~~d~~~~~l~~~~~rl~~l 64 (66)
T 1n7s_D 4 RENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATKM 64 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 3456788899999999999999999999999999999999999999999999999887765
No 17
>1l4a_D S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=96.95 E-value=0.0032 Score=45.53 Aligned_cols=64 Identities=14% Similarity=0.235 Sum_probs=57.6
Q ss_pred hhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042996 143 RMMDETDQAIERSKQVVHETINVGTETAAVLKAQTEQMSRIVNELDSIHFSIKKASQLVKEIGR 206 (261)
Q Consensus 143 ~~l~~~~~~L~~s~~~~~ete~ig~~il~~L~~Qre~l~~~~~~l~~i~~~L~~s~~~l~~m~r 206 (261)
....+.++.|......+.....+|.++..+|..|.+.|.++.++++.++..|..+++-++.+.+
T Consensus 23 ~~e~eqD~~Ld~ls~~l~rLk~mA~~mg~Eld~Qn~~LD~i~~~~D~~~~rl~~~n~r~~kll~ 86 (87)
T 1l4a_D 23 AREDDMENNMKEVSSMIGNLRNMAIDMGNEIGSQNRQVDRIQQKAESNESRIDEANKKATKLLK 86 (87)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTHHHHHHHHCC-
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3566788999999999999999999999999999999999999999999999999988876543
No 18
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B
Probab=95.84 E-value=0.11 Score=36.21 Aligned_cols=63 Identities=14% Similarity=0.183 Sum_probs=56.1
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042996 145 MDETDQAIERSKQVVHETINVGTETAAVLKAQTEQMSRIVNELDSIHFSIKKASQLVKEIGRQ 207 (261)
Q Consensus 145 l~~~~~~L~~s~~~~~ete~ig~~il~~L~~Qre~l~~~~~~l~~i~~~L~~s~~~l~~m~rr 207 (261)
...-...+.+..+.+.|..++..+...-...|.+.|+++..++..+..++..|..-|..-.+.
T Consensus 5 i~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~~~ 67 (77)
T 1jth_B 5 IETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKY 67 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445567788999999999999999999999999999999999999999999999988775543
No 19
>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3c98_B
Probab=94.90 E-value=0.7 Score=39.85 Aligned_cols=71 Identities=14% Similarity=0.187 Sum_probs=50.5
Q ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhhhhhHH
Q 042996 144 MMDETDQAIERSKQVVHETINVGTETAAVLKAQTEQMSRIVNELDSIHFSIKKASQLVKE---IGRQVATDKCI 214 (261)
Q Consensus 144 ~l~~~~~~L~~s~~~~~ete~ig~~il~~L~~Qre~l~~~~~~l~~i~~~L~~s~~~l~~---m~rr~~~dK~i 214 (261)
....-...+.+..+.+.|..++..+...-...|.+.|+++..++..+..++..|..-|.. +.++....|||
T Consensus 194 ~i~~R~~~i~~ie~~i~el~~if~dla~lV~~Qg~~id~Ie~nv~~a~~~v~~~~~~l~kA~~~q~~~rkk~~~ 267 (267)
T 1dn1_B 194 EIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARRKKIM 267 (267)
T ss_dssp HHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCSGGGCHHHHHHTCCCCCCCCC-------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccC
Confidence 455666779999999999999999999999999999999999999999999998887753 55555555554
No 20
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B
Probab=94.81 E-value=0.39 Score=32.58 Aligned_cols=60 Identities=15% Similarity=0.199 Sum_probs=54.4
Q ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042996 144 MMDETDQAIERSKQVVHETINVGTETAAVLKAQTEQMSRIVNELDSIHFSIKKASQLVKE 203 (261)
Q Consensus 144 ~l~~~~~~L~~s~~~~~ete~ig~~il~~L~~Qre~l~~~~~~l~~i~~~L~~s~~~l~~ 203 (261)
....-...+.+..+.+.|..++..+...-...|.+.|+++..++..+..++..|..-|..
T Consensus 6 ~i~eR~~ei~~Ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~k 65 (68)
T 1n7s_B 6 EIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKK 65 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667778999999999999999999999999999999999999999999999988764
No 21
>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=94.80 E-value=0.42 Score=32.57 Aligned_cols=61 Identities=8% Similarity=0.163 Sum_probs=55.0
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042996 145 MDETDQAIERSKQVVHETINVGTETAAVLKAQTEQMSRIVNELDSIHFSIKKASQLVKEIG 205 (261)
Q Consensus 145 l~~~~~~L~~s~~~~~ete~ig~~il~~L~~Qre~l~~~~~~l~~i~~~L~~s~~~l~~m~ 205 (261)
+..-...+.+..+.+.|..++..+...-...|.+.|+++..++..+..++..|..-|..=.
T Consensus 5 i~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~ 65 (69)
T 3b5n_B 5 VQARHQELLKLEKSMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQLDVEQGVGHTDKAV 65 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456677889999999999999999999999999999999999999999999999886543
No 22
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=94.79 E-value=0.0029 Score=48.47 Aligned_cols=73 Identities=8% Similarity=0.190 Sum_probs=49.2
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 042996 148 TDQAIERSKQVVHETINVGTETAAVLKAQTEQMSRIVNELDSIHFSIKKASQLVKEIGRQVATDKCIMAMLFL 220 (261)
Q Consensus 148 ~~~~L~~s~~~~~ete~ig~~il~~L~~Qre~l~~~~~~l~~i~~~L~~s~~~l~~m~rr~~~dK~i~~~iil 220 (261)
+.+.|...+..++|+..+-.+.++.+-+..|.|+...++.++....-..=.+.-+.+.|++.-.++-++++++
T Consensus 31 ~~d~l~~vq~evdeVk~IM~~NIdkvLeRGEkLd~L~~KTe~L~~~S~~F~k~A~kl~rkmwwkn~K~~iii~ 103 (119)
T 2kog_A 31 SNRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWWKNLKMMIILG 103 (119)
T ss_dssp SCSHHHHSSHHHHHHHHHHHHHHHHHHCCCCSSCCCCSCCSCCCSSSHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777777788888888888888888888888887777766555555555555666665544444444433
No 23
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=94.74 E-value=0.39 Score=32.87 Aligned_cols=59 Identities=14% Similarity=0.228 Sum_probs=52.8
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042996 149 DQAIERSKQVVHETINVGTETAAVLKAQTEQMSRIVNELDSIHFSIKKASQLVKEIGRQ 207 (261)
Q Consensus 149 ~~~L~~s~~~~~ete~ig~~il~~L~~Qre~l~~~~~~l~~i~~~L~~s~~~l~~m~rr 207 (261)
...+.+..+.+.|..++..+...-...|.+.|+++..++..+..++..|..-|..-.+.
T Consensus 5 ~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~~~ 63 (71)
T 2nps_B 5 ETAIQQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERASDQLQRAAYY 63 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678888999999999999999999999999999999999999999999988664443
No 24
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=94.53 E-value=0.38 Score=32.41 Aligned_cols=57 Identities=12% Similarity=0.252 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042996 147 ETDQAIERSKQVVHETINVGTETAAVLKAQTEQMSRIVNELDSIHFSIKKASQLVKE 203 (261)
Q Consensus 147 ~~~~~L~~s~~~~~ete~ig~~il~~L~~Qre~l~~~~~~l~~i~~~L~~s~~~l~~ 203 (261)
.-...+.+..+.+.+..++..+...-...|.+.|+++..++..+..++..|..-|..
T Consensus 6 eR~~~i~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~k 62 (65)
T 1gl2_B 6 ERESSIRQLEADIMDINEIFKDLGMMIHEQGDVIDSIEANVESAEVHVQQANQQLSR 62 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344567888999999999999999999999999999999999999999999988764
No 25
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=93.96 E-value=11 Score=43.16 Aligned_cols=66 Identities=6% Similarity=0.046 Sum_probs=52.7
Q ss_pred hhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042996 141 GNRMMDETDQAIERSKQVVHETINVGTETAAVLKAQTEQMSRIVNELDSIHFSIKKASQLVKEIGR 206 (261)
Q Consensus 141 ~~~~l~~~~~~L~~s~~~~~ete~ig~~il~~L~~Qre~l~~~~~~l~~i~~~L~~s~~~l~~m~r 206 (261)
..+.+..+...|...+..+.+.++-=...-.++..-...-.....++..+...|.+|.+++...+-
T Consensus 2019 ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~ 2084 (3245)
T 3vkg_A 2019 LENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNS 2084 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 556677788888888888887777666666666776777788889999999999999999988764
No 26
>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B
Probab=93.65 E-value=0.9 Score=32.02 Aligned_cols=63 Identities=14% Similarity=0.182 Sum_probs=56.5
Q ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042996 144 MMDETDQAIERSKQVVHETINVGTETAAVLKAQTEQMSRIVNELDSIHFSIKKASQLVKEIGR 206 (261)
Q Consensus 144 ~l~~~~~~L~~s~~~~~ete~ig~~il~~L~~Qre~l~~~~~~l~~i~~~L~~s~~~l~~m~r 206 (261)
....-...+.+..+.+.|..++..+...-...|.+.|+++..++..+..++..|..-|..-.+
T Consensus 15 ~i~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~~ 77 (83)
T 1sfc_B 15 EIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVK 77 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355667779999999999999999999999999999999999999999999999998876543
No 27
>2xhe_B Syntaxin1; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis}
Probab=93.20 E-value=1.3 Score=38.29 Aligned_cols=60 Identities=20% Similarity=0.291 Sum_probs=46.6
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042996 145 MDETDQAIERSKQVVHETINVGTETAAVLKAQTEQMSRIVNELDSIHFSIKKASQLVKEI 204 (261)
Q Consensus 145 l~~~~~~L~~s~~~~~ete~ig~~il~~L~~Qre~l~~~~~~l~~i~~~L~~s~~~l~~m 204 (261)
+..-...+..+.+.+.|..++..+...-...|.+.|++|..++..+..++..|..-|..-
T Consensus 212 i~eR~~eI~~Ie~~i~el~~if~dla~lV~~Qg~~id~Ie~nv~~~~~~v~~~~~~l~kA 271 (279)
T 2xhe_B 212 IRDRHKDIQQLERSLLELHEMFTDMSTLVASQGEMIDRIEFSVEQSHNYVKKATEQVVQA 271 (279)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHTTTTTSCSSTTCHHHHHHTCCCCC----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445677899999999999999999999999999999999999999999999999887653
No 28
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=91.90 E-value=2.5 Score=30.26 Aligned_cols=71 Identities=7% Similarity=0.168 Sum_probs=36.8
Q ss_pred hhHHHHHHHHHHHHhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 042996 144 MMDETDQAIERSKQVVHETINVGT---ETAAVLKAQTEQMSRIVNELDSIHFSIKKASQLVKEIGRQVATDKCIMAMLFL 220 (261)
Q Consensus 144 ~l~~~~~~L~~s~~~~~ete~ig~---~il~~L~~Qre~l~~~~~~l~~i~~~L~~s~~~l~~m~rr~~~dK~i~~~iil 220 (261)
.+.+....+++...++.+..+--. +-++.|.+..+.|........ ..|+++=+.|--+-++-++++.++++
T Consensus 6 ~l~~vq~ev~evk~iM~~NI~kvL~RgekL~~L~~kt~~L~~~s~~F~------~~A~~l~rkmwwkn~K~~iii~~iv~ 79 (91)
T 3hd7_A 6 RLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFE------TSAAKLKRKYWWKNLKMMIILGVICA 79 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555554444443222 224556666666655444333 34555556677777776666555544
No 29
>2avr_X Adhesion A; antiparallel helix-loop-helix, leucine chain; HET: FLC; 1.90A {Fusobacterium nucleatum} PDB: 3etw_A 2gkq_A 2bc6_A 3etx_A 3ety_A 2gld_A 3etz_A 2gl2_A
Probab=83.15 E-value=13 Score=28.01 Aligned_cols=96 Identities=13% Similarity=0.164 Sum_probs=54.6
Q ss_pred CcchhhHHHHHHHHHHHHHHHHHHhhhhchhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCChHhHHHHH
Q 042996 2 DLSSISDDLAEINGQITDIFRALSNGFQKLEKIKDVNRQSRQLEELTDKMRECKRLIKEFDREVKDIEGRNDPETNKMLS 81 (261)
Q Consensus 2 ~~~~~s~~l~~~e~~~~~i~~~i~~~~~~L~~~~~~~~r~~~i~~i~~~l~ea~~ll~qme~Ev~~~~~s~~~~~r~~~~ 81 (261)
|.+++-+.|.++|.+|+.+.+.=...+..... ..+...+.+.+-...-.+++..+..+.-. . ...-++..|.
T Consensus 3 ~a~~V~s~l~~LEaeyq~L~~kE~qrynqeka--~AE~A~~~L~~~~~m~~~i~ek~~~i~~~----~--~~~~yK~eY~ 74 (119)
T 2avr_X 3 DAASLVGELQALDAEYQNLANQEEARFNEERA--QADAARQALAQNEQVYNELSQRAQRLQAE----A--NTRFYKSQYQ 74 (119)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----T--TSCTTHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----h--cccHHHHHHH
Confidence 66788889999999999998543333322211 12223333443333334444444444432 1 1233677888
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhh
Q 042996 82 EKKQSMVKELNSYVALKKQHQTNL 105 (261)
Q Consensus 82 ~~~~~~~~~l~~~~~~~k~~~~~~ 105 (261)
.-++.|+.-++.+....+..+..+
T Consensus 75 ~L~KkYk~~~~~Ld~eI~~qe~iI 98 (119)
T 2avr_X 75 ELASKYEDALKKLEAEMEQQKAVI 98 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888877777776665555444
No 30
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=82.79 E-value=37 Score=39.08 Aligned_cols=63 Identities=19% Similarity=0.240 Sum_probs=40.1
Q ss_pred chhhHHHHHHHHHHHHHHHHHHhhhhchhhhc-chhHHHHHHH----HHHHHHHHHHHHHHHHHHHHh
Q 042996 4 SSISDDLAEINGQITDIFRALSNGFQKLEKIK-DVNRQSRQLE----ELTDKMRECKRLIKEFDREVK 66 (261)
Q Consensus 4 ~~~s~~l~~~e~~~~~i~~~i~~~~~~L~~~~-~~~~r~~~i~----~i~~~l~ea~~ll~qme~Ev~ 66 (261)
+.|...+..=..++.....-++.|+.+|.... ..++-+..+. .++.+-.++++++.++..+-.
T Consensus 1902 ~~y~~ll~~K~~el~~~~~rl~~GL~KL~et~~~V~~l~~~L~~~~~~L~~k~~ea~~~l~~i~~~~~ 1969 (3245)
T 3vkg_A 1902 NQVVLLINEKRDQLEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQKNRELDVKNEQANQKLKQMVQDQQ 1969 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777788888888888888876642 1222223333 344444677778888776643
No 31
>3c98_B Syntaxin-1A; protein complex, alternative splicing, cytoplasm, membrane, phosphoprotein, protein transport, transport, coiled coil; 2.60A {Rattus norvegicus}
Probab=82.24 E-value=3.8 Score=34.31 Aligned_cols=74 Identities=14% Similarity=0.167 Sum_probs=51.9
Q ss_pred hhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhhhhhHH
Q 042996 141 GNRMMDETDQAIERSKQVVHETINVGTETAAVLKAQTEQMSRIVNELDSIHFSIKKASQLVKE---IGRQVATDKCI 214 (261)
Q Consensus 141 ~~~~l~~~~~~L~~s~~~~~ete~ig~~il~~L~~Qre~l~~~~~~l~~i~~~L~~s~~~l~~---m~rr~~~dK~i 214 (261)
+..........+..+...+.+..++..++..-...|.+.+..+...+..+...+..+..-+.. ..++..+.|||
T Consensus 203 ~~~~i~~~~~~i~~I~~~i~ei~~~~~~ia~~v~eQ~~~~~~I~~nv~~~~~~v~~~~~el~~A~~~q~~~Rkkk~i 279 (279)
T 3c98_B 203 ALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARRKKIM 279 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCSGGGCHHHHHHTCCCCCCCCC-------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCcC
Confidence 455677888999999999999999999999999999999999999999988877766665543 34444444554
No 32
>4aj5_A SKA1, spindle and kinetochore-associated protein 1; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}
Probab=80.25 E-value=14 Score=26.39 Aligned_cols=59 Identities=14% Similarity=0.304 Sum_probs=38.7
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhchhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042996 7 SDDLAEINGQITDIFRALSNGFQKLEKIKDVNRQSRQLEELTDKMRECKRLIKEFDREVK 66 (261)
Q Consensus 7 s~~l~~~e~~~~~i~~~i~~~~~~L~~~~~~~~r~~~i~~i~~~l~ea~~ll~qme~Ev~ 66 (261)
+++|+++=.-++.-+..|...++ |..+......+..++++...+--+.++|+.||.||.
T Consensus 3 ~s~LEdlc~hineKIs~ikk~L~-Lr~~gqdP~lk~~L~Kig~Ei~~l~eLLn~~E~eV~ 61 (91)
T 4aj5_A 3 SSDLEQLCSHVNEKIGNIKKTLS-LRNCGQEPTLKTVLNKIGDEIIVINELLNKLELEIQ 61 (91)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHH-HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHH-HHhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566655555555444443331 233322234668899999999999999999999984
No 33
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=78.50 E-value=19 Score=27.07 Aligned_cols=97 Identities=11% Similarity=0.152 Sum_probs=58.3
Q ss_pred CcchhhHHHHHHHHHHHHHHHHHHhhhhchhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCChHhHHHHH
Q 042996 2 DLSSISDDLAEINGQITDIFRALSNGFQKLEKIKDVNRQSRQLEELTDKMRECKRLIKEFDREVKDIEGRNDPETNKMLS 81 (261)
Q Consensus 2 ~~~~~s~~l~~~e~~~~~i~~~i~~~~~~L~~~~~~~~r~~~i~~i~~~l~ea~~ll~qme~Ev~~~~~s~~~~~r~~~~ 81 (261)
|.+++-+.|..++.+|+.+.+.=...+..... ..+.+.+.+.+......++..-+..+.-+- . ..-++..|.
T Consensus 3 ~a~~i~~~l~~Leae~q~L~~~E~qry~~eka--~AE~A~~~La~~~~l~~~i~er~~~i~~~~----~--~~~yk~~y~ 74 (119)
T 3etw_A 3 DAASLVGELQALDAEYQNLANQEEARFNEERA--QADAARQALAQNEQVYNELSQRAQRLQAEA----N--TRFYKSQYQ 74 (119)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----T--SCTTHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----c--cchHHHHHH
Confidence 45677788999999999998554444433222 123344445555555555555555555442 1 223566788
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhh
Q 042996 82 EKKQSMVKELNSYVALKKQHQTNLE 106 (261)
Q Consensus 82 ~~~~~~~~~l~~~~~~~k~~~~~~~ 106 (261)
..+.+|...++.+....+..+..+.
T Consensus 75 ~l~k~Y~~~~keLd~~ik~qekiId 99 (119)
T 3etw_A 75 ELASKYEDALKKLEAEMEQQKAVIS 99 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888877776666555443
No 34
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=77.93 E-value=18 Score=26.52 Aligned_cols=56 Identities=14% Similarity=0.090 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Q 042996 173 LKAQTEQMSRIVNELDSIHFSIKKASQLVKEIGRQVATDKCIMAMLFLIVIGVIAII 229 (261)
Q Consensus 173 L~~Qre~l~~~~~~l~~i~~~L~~s~~~l~~m~rr~~~dK~i~~~iill~i~Ii~vi 229 (261)
+++=-..+..+...+......|.+|.+.=++-.++.+- =+++++++++++++++.+
T Consensus 51 Id~Ie~nv~~a~~~v~~g~~eL~kA~~yqk~~rkk~~i-~l~~~~i~~~i~~~~~~~ 106 (109)
T 3hd7_B 51 IDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARRKKIM-IIICCVILGIIIASTIGG 106 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccee-hHHHHHHHHHHHHHHhcc
Confidence 33344566778888888888888888776655444333 356666666556666543
No 35
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=72.44 E-value=1.5 Score=29.53 Aligned_cols=33 Identities=18% Similarity=0.228 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHhhccCCCCccCCCCCCCCc
Q 042996 218 LFLIVIGVIAIIIVKLVNPNNKDIRDIPGLAPP 250 (261)
Q Consensus 218 iill~i~Ii~vi~~k~~~~~~~~~~~~~~~~~~ 250 (261)
+++++++|++++.-|.--+.+.|-+++|.-|||
T Consensus 26 ~vLfi~GI~iilS~kcrCk~~qk~~~~~~~a~~ 58 (67)
T 2jp3_A 26 GLLCIAGIALALSGKCKCRRNHTPSSLPEKVTP 58 (67)
T ss_dssp HHHHHHHHHHHHTTHHHHHHTCCTTTSTTTSHH
T ss_pred HHHHHHHHHHHHcCcccccCCCCCCCCCccCCc
Confidence 333455555555544433446676777755554
No 36
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=69.12 E-value=6.3 Score=29.68 Aligned_cols=77 Identities=10% Similarity=0.173 Sum_probs=36.3
Q ss_pred hhHHHHHHHHHHHHhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 042996 144 MMDETDQAIERSKQVVHETINVGTE---TAAVLKAQTEQMSRIVNELDSIHFSIKKASQLVKEIGRQVATDKCIMAMLFL 220 (261)
Q Consensus 144 ~l~~~~~~L~~s~~~~~ete~ig~~---il~~L~~Qre~l~~~~~~l~~i~~~L~~s~~~l~~m~rr~~~dK~i~~~iil 220 (261)
.+.+....++....++.+..+--.+ -+++|.+..+.|...-.. --..|+++-+.|--+-+.-++|+.++++
T Consensus 34 ~l~~vq~evdeVk~IM~~NIdkvLeRGEkLd~L~~KTe~L~~~S~~------F~k~A~kl~rkmwwkn~K~~iii~~iv~ 107 (119)
T 2kog_A 34 RLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQ------FETSAAKLKRKYWWKNLKMMIILGVICA 107 (119)
T ss_dssp HHHHSSHHHHHHHHHHHHHHHHHHCCCCSSCCCCSCCSCCCSSSHH------HHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555554432111 122334444333332222 2234555556666666666677666665
Q ss_pred HHHHHH
Q 042996 221 IVIGVI 226 (261)
Q Consensus 221 l~i~Ii 226 (261)
+++.||
T Consensus 108 iii~iI 113 (119)
T 2kog_A 108 IILIII 113 (119)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 444444
No 37
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=68.64 E-value=20 Score=26.53 Aligned_cols=18 Identities=6% Similarity=-0.027 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 042996 82 EKKQSMVKELNSYVALKK 99 (261)
Q Consensus 82 ~~~~~~~~~l~~~~~~~k 99 (261)
.-+..|+..+..|++.+.
T Consensus 69 ~~Vs~lq~KiaeLKrqLA 86 (113)
T 4fi5_A 69 GVAVSIQAKIDELKRQLA 86 (113)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444445555554444
No 38
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=67.99 E-value=27 Score=24.07 Aligned_cols=21 Identities=14% Similarity=0.237 Sum_probs=18.0
Q ss_pred CCcchhhHHHHHHHHHHHHHH
Q 042996 1 MDLSSISDDLAEINGQITDIF 21 (261)
Q Consensus 1 ~~~~~~s~~l~~~e~~~~~i~ 21 (261)
||++-|+.+|+.+-.+...++
T Consensus 2 ~~~~gmgkevEnLi~EN~eLl 22 (77)
T 2w83_C 2 MDPEFMGREVENLILENTQLL 22 (77)
T ss_dssp CCHHHHHHHHHHHHHHHHHHH
T ss_pred CChhhhhHHHHHHHHHHHHHH
Confidence 788889999999888888876
No 39
>2kv5_A FST, putative uncharacterized protein RNAI; toxin-antitoxin, bacterial, toxin; NMR {Enterococcus faecalis}
Probab=67.00 E-value=5.5 Score=22.96 Aligned_cols=24 Identities=17% Similarity=0.581 Sum_probs=19.0
Q ss_pred HHHHHHH-HHHHHHHHHHHhhccCC
Q 042996 214 IMAMLFL-IVIGVIAIIIVKLVNPN 237 (261)
Q Consensus 214 i~~~iil-l~i~Ii~vi~~k~~~~~ 237 (261)
++..||. +++++++-++-+|+...
T Consensus 4 i~~~IIaPivVGvvl~L~d~WLn~r 28 (33)
T 2kv5_A 4 LMSLVIAPIFVGLVLEMISRVLDEE 28 (33)
T ss_dssp THHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccc
Confidence 4556666 99999999999998654
No 40
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=64.66 E-value=54 Score=30.84 Aligned_cols=28 Identities=21% Similarity=0.354 Sum_probs=19.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhchhh
Q 042996 6 ISDDLAEINGQITDIFRALSNGFQKLEK 33 (261)
Q Consensus 6 ~s~~l~~~e~~~~~i~~~i~~~~~~L~~ 33 (261)
|-..|...|.++...+.+|...+..+.+
T Consensus 51 LQglLdkqErDltkrINELKnqLEdlsK 78 (562)
T 3ghg_A 51 MKGLIDEVNQDFTNRINKLKNSLFEYQK 78 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred hhhhHHhhcCcHHHHHHHHHHHHHHHHh
Confidence 4456777777777777777777666543
No 41
>2jpw_A Troponin I, cardiac muscle; poly (L-proline) II helix, contractIle protein; HET: SEP; NMR {Synthetic}
Probab=63.95 E-value=1.2 Score=25.04 Aligned_cols=18 Identities=33% Similarity=0.501 Sum_probs=13.6
Q ss_pred CCccCCCCCCCCchhhhc
Q 042996 238 NKDIRDIPGLAPPAMARR 255 (261)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~ 255 (261)
+.++.+.|-|+||+-+||
T Consensus 5 ~~~~~~~~~PaP~p~RRr 22 (32)
T 2jpw_A 5 SSDAAGEPQPAPAPVRRR 22 (32)
T ss_dssp THHHHSCCCCCCCCCCCT
T ss_pred cccCCCCCCCCCcccccc
Confidence 346778899999986665
No 42
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=60.83 E-value=31 Score=25.18 Aligned_cols=24 Identities=33% Similarity=0.326 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhch
Q 042996 8 DDLAEINGQITDIFRALSNGFQKL 31 (261)
Q Consensus 8 ~~l~~~e~~~~~i~~~i~~~~~~L 31 (261)
+.+++++.++...=..+....++|
T Consensus 35 ~~ieeLQ~Ei~~~E~QL~iArQKL 58 (107)
T 2k48_A 35 STLQELQENITAHEQQLVTARQKL 58 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666554444444443
No 43
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=59.90 E-value=16 Score=23.54 Aligned_cols=17 Identities=6% Similarity=0.280 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHh--hccCC
Q 042996 221 IVIGVIAIIIVK--LVNPN 237 (261)
Q Consensus 221 l~i~Ii~vi~~k--~~~~~ 237 (261)
+++++++++.|| ||+++
T Consensus 21 LLL~Lii~~LwK~GFFKR~ 39 (54)
T 2l8s_A 21 LLLMLLILALWKIGFFKRP 39 (54)
T ss_dssp HHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHcCcccCC
Confidence 455555555554 46554
No 44
>3f6n_A Virion-associated protein; coiled-coil, viral protein, tetramer, DNA-binding, D binding protein; 3.10A {Cauliflower mosaic virus}
Probab=58.12 E-value=14 Score=27.75 Aligned_cols=55 Identities=15% Similarity=0.280 Sum_probs=36.4
Q ss_pred CCcchhhHHHHHHHHHHHHHHHHHHhhhhchhhhcc-----hhHHHHHHHHHHHHHHHHH
Q 042996 1 MDLSSISDDLAEINGQITDIFRALSNGFQKLEKIKD-----VNRQSRQLEELTDKMRECK 55 (261)
Q Consensus 1 ~~~~~~s~~l~~~e~~~~~i~~~i~~~~~~L~~~~~-----~~~r~~~i~~i~~~l~ea~ 55 (261)
|.++.+.++++.+-+++..+..+|...+.++..... -.-....|+++..+|+.|+
T Consensus 2 ~nl~~i~~ei~e~~~~i~~l~~~Ik~il~~~~st~~~~~~lEsiAAKIIkDisdkId~Ce 61 (129)
T 3f6n_A 2 ANLNQIQKEVSEILSDQKSMKADIKAILELLGSQNPIKESLETVAAKIVNDLTKLINDCP 61 (129)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhhhHHHHHHHHHHHHHHHHhcCc
Confidence 456677788888888888888888877766554221 1123466777888886654
No 45
>1q90_R Cytochrome B6-F complex iron-sulfur subunit; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.12.1
Probab=57.80 E-value=21 Score=22.49 Aligned_cols=33 Identities=9% Similarity=0.035 Sum_probs=21.2
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhccC
Q 042996 203 EIGRQVATDKCIMAMLFLIVIGVIAIIIVKLVNP 236 (261)
Q Consensus 203 ~m~rr~~~dK~i~~~iill~i~Ii~vi~~k~~~~ 236 (261)
.|.||..-|++.+ +++.++.+..++-|.+||-+
T Consensus 8 dm~RRqfln~l~~-G~~a~~a~~~~~P~v~ffvp 40 (49)
T 1q90_R 8 DMNKRNIMNLILA-GGAGLPITTLALGYGAFFVP 40 (49)
T ss_dssp CHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHSC
T ss_pred ChHHHHHHHHHHH-HHHHHHHHHHHHhhheeecC
Confidence 4889988886655 44445555556666666654
No 46
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=56.85 E-value=1.2e+02 Score=28.17 Aligned_cols=27 Identities=15% Similarity=0.313 Sum_probs=19.8
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhchhh
Q 042996 7 SDDLAEINGQITDIFRALSNGFQKLEK 33 (261)
Q Consensus 7 s~~l~~~e~~~~~i~~~i~~~~~~L~~ 33 (261)
.+-|..|+..+..-+.+|+..+..|+.
T Consensus 88 ~D~L~k~q~~V~~~LqeLe~~l~~lsn 114 (464)
T 1m1j_B 88 QTTLLKQEKTVKPVLRDLKDRVAKFSD 114 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhHhHHHHHHHHHHHHhh
Confidence 455677888787778777877777765
No 47
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=54.97 E-value=43 Score=23.17 Aligned_cols=23 Identities=35% Similarity=0.265 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhch
Q 042996 9 DLAEINGQITDIFRALSNGFQKL 31 (261)
Q Consensus 9 ~l~~~e~~~~~i~~~i~~~~~~L 31 (261)
.++.++.++..+=..+....++|
T Consensus 6 ~l~eLq~e~~~~E~QL~~A~QKL 28 (78)
T 2ic6_A 6 TLKEVQDNITLHEQRLVTTRQKL 28 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555544444444443
No 48
>1vp7_A Exodeoxyribonuclease VII small subunit; NP_881400.1, joint center for structural genomics, PSI, protein structure initiative; 2.40A {Bordetella pertussis tohama I} SCOP: a.7.13.1
Probab=54.63 E-value=51 Score=23.89 Aligned_cols=53 Identities=15% Similarity=0.273 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhchhhh-cchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 042996 10 LAEINGQITDIFRALSNGFQKLEKI-KDVNRQSRQLEELTDKMRECKRLIKEFD 62 (261)
Q Consensus 10 l~~~e~~~~~i~~~i~~~~~~L~~~-~~~~~r~~~i~~i~~~l~ea~~ll~qme 62 (261)
|+.-=.++..|+..|+++--.|+.. ..-++-..+++.|+..|..|+.-|..++
T Consensus 32 FEeal~eLEeIV~~LE~gel~LEesl~lyeeG~~L~k~C~~~L~~AE~kV~~L~ 85 (100)
T 1vp7_A 32 FETALAELESLVSAMENGTLPLEQSLSAYRRGVELARVCQDRLAQAEQQVKVLE 85 (100)
T ss_dssp HHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5666667778888888876565542 2234555777778888877777766664
No 49
>1sfc_A VAMP 2, protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=54.11 E-value=57 Score=23.28 Aligned_cols=60 Identities=8% Similarity=0.252 Sum_probs=44.7
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042996 148 TDQAIERSKQVVHETINVGTETAAVLKAQTEQMSRIVNELDSIHFSIKKASQLVKEIGRQ 207 (261)
Q Consensus 148 ~~~~L~~s~~~~~ete~ig~~il~~L~~Qre~l~~~~~~l~~i~~~L~~s~~~l~~m~rr 207 (261)
..+.|..++..++|+..|-...++.+-...|.|+...++.++....-..=.+.-+.+.|+
T Consensus 28 ~~d~l~~vq~eldeVk~IM~~NI~kvLeRGEkLd~L~dkse~L~~~S~~F~k~A~kl~rk 87 (96)
T 1sfc_A 28 SNRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRK 87 (96)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888888889888889999999999999998888887666554444444444443
No 50
>2k9j_B Integrin beta-3; transmembrane complex, cell adhesion, cleavage on basic residues, disease mutation, glycoprotein, pyrrolidone carboxylic acid; NMR {Homo sapiens} PDB: 2rmz_A 2rn0_A 2l91_A
Probab=53.89 E-value=14 Score=22.53 Aligned_cols=14 Identities=43% Similarity=0.823 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHhhc
Q 042996 221 IVIGVIAIIIVKLV 234 (261)
Q Consensus 221 l~i~Ii~vi~~k~~ 234 (261)
++++++++++||++
T Consensus 21 vliGl~lLliwk~~ 34 (43)
T 2k9j_B 21 LLIGLAALLIWKLL 34 (43)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 66788888888875
No 51
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=53.74 E-value=12 Score=26.06 Aligned_cols=14 Identities=43% Similarity=0.823 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHhhc
Q 042996 221 IVIGVIAIIIVKLV 234 (261)
Q Consensus 221 l~i~Ii~vi~~k~~ 234 (261)
++++++++++||++
T Consensus 22 lliGllllliwk~~ 35 (79)
T 2knc_B 22 LLIGLAALLIWKLL 35 (79)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 56677777777743
No 52
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=51.46 E-value=23 Score=22.81 Aligned_cols=17 Identities=12% Similarity=0.456 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHh--hccCC
Q 042996 221 IVIGVIAIIIVK--LVNPN 237 (261)
Q Consensus 221 l~i~Ii~vi~~k--~~~~~ 237 (261)
+++++++++.|| ||+++
T Consensus 24 llL~li~~~LwK~GFFkR~ 42 (54)
T 2knc_A 24 LLLTILVLAMWKVGFFKRN 42 (54)
T ss_dssp HHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHcCcccCC
Confidence 455555555554 45553
No 53
>2p2u_A HOST-nuclease inhibitor protein GAM, putative; structural genomics, unknown function, PSI-2, protein structure initiative; 2.75A {Desulfovibrio vulgaris} SCOP: h.4.18.1
Probab=50.89 E-value=90 Score=24.63 Aligned_cols=64 Identities=8% Similarity=0.174 Sum_probs=39.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCC
Q 042996 38 NRQSRQLEELTDKMRECKRLIKEFDREVKDIEGRNDPETNKMLSEKKQSMVKELNSYVALKKQHQTNLENNKRVDLFDG 116 (261)
Q Consensus 38 ~~r~~~i~~i~~~l~ea~~ll~qme~Ev~~~~~s~~~~~r~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~R~~L~~~ 116 (261)
+..-+.+.+++..+. ++-..|+.|+.. .+..+......++..++.+...+..|-. .+|++||..
T Consensus 19 ~~alr~ia~l~r~~~---~i~~~~n~eI~~--------ik~~~~~~~~~l~~~i~~l~~~l~~y~e----~~r~elf~k 82 (171)
T 2p2u_A 19 EGALAEIATIDRKVG---EIEAQMNEAIDA--------AKARASQKSAPLLARRKELEDGVATFAT----LNKTEMFKD 82 (171)
T ss_dssp HHHHHHHHHHHHHHH---HHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HTHHHHCC-
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhHHHhcCC
Confidence 333344444444444 444446666643 3456777778888888877777776654 468888864
No 54
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=50.66 E-value=6.6 Score=26.93 Aligned_cols=29 Identities=24% Similarity=0.253 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHhhccCCCCccCCCCCCCC
Q 042996 221 IVIGVIAIIIVKLVNPNNKDIRDIPGLAP 249 (261)
Q Consensus 221 l~i~Ii~vi~~k~~~~~~~~~~~~~~~~~ 249 (261)
++++|++++.-|.--+.+.|-+..|+.++
T Consensus 31 fi~GI~iilS~kcrCk~~qk~~~~p~d~~ 59 (74)
T 2zxe_G 31 CVIGIIILLAGKCRCKFNQNKRTRSNSGT 59 (74)
T ss_dssp HHHHHHHHTTTC-----------------
T ss_pred HHHHHHHHHcCccccCCCCCCCCCCCccc
Confidence 34444444333332234667666776665
No 55
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=48.43 E-value=16 Score=24.82 Aligned_cols=16 Identities=13% Similarity=0.470 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHhh
Q 042996 218 LFLIVIGVIAIIIVKL 233 (261)
Q Consensus 218 iill~i~Ii~vi~~k~ 233 (261)
+++++++|++++.-|.
T Consensus 25 ~vLfi~GI~iilS~Kc 40 (72)
T 2jo1_A 25 GILFILGILIVLSRRC 40 (72)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcc
Confidence 3344555555555544
No 56
>3b5n_A Synaptobrevin homolog 1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=47.59 E-value=54 Score=21.15 Aligned_cols=46 Identities=11% Similarity=0.252 Sum_probs=36.8
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042996 150 QAIERSKQVVHETINVGTETAAVLKAQTEQMSRIVNELDSIHFSIK 195 (261)
Q Consensus 150 ~~L~~s~~~~~ete~ig~~il~~L~~Qre~l~~~~~~l~~i~~~L~ 195 (261)
+.|...+..++|+..|-...++.+-...|.|+...++.++....-.
T Consensus 2 d~l~~vq~~l~evk~iM~~NI~~vl~RgekLd~L~~ks~~L~~~s~ 47 (61)
T 3b5n_A 2 SRTAELQAEIDDTVGIMRDNINKVAERGERLTSIEDKADNLAVSAQ 47 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 4577788888888888888899999999999888888776555543
No 57
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=47.47 E-value=1.8e+02 Score=27.09 Aligned_cols=15 Identities=7% Similarity=0.248 Sum_probs=7.8
Q ss_pred hhHHHHHHHHHHHHH
Q 042996 6 ISDDLAEINGQITDI 20 (261)
Q Consensus 6 ~s~~l~~~e~~~~~i 20 (261)
|-..|..|..++..+
T Consensus 7 yq~~la~yq~elarv 21 (497)
T 3iox_A 7 YQAKLTAYQTELARV 21 (497)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344555555555544
No 58
>3j1r_A Archaeal adhesion filament core; helical polymer, flagellar filament, cell adhesion, structur protein; 7.50A {Ignicoccus hospitalis}
Probab=46.74 E-value=26 Score=18.87 Aligned_cols=13 Identities=31% Similarity=0.572 Sum_probs=5.6
Q ss_pred HHHHHH-HHHHHhh
Q 042996 221 IVIGVI-AIIIVKL 233 (261)
Q Consensus 221 l~i~Ii-~vi~~k~ 233 (261)
++++++ .++.|-|
T Consensus 11 Iviav~aaVllylW 24 (26)
T 3j1r_A 11 ILIAVAAAVLLYTW 24 (26)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 444444 3444433
No 59
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=46.42 E-value=1.3e+02 Score=27.03 Aligned_cols=28 Identities=14% Similarity=0.287 Sum_probs=20.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhchhh
Q 042996 6 ISDDLAEINGQITDIFRALSNGFQKLEK 33 (261)
Q Consensus 6 ~s~~l~~~e~~~~~i~~~i~~~~~~L~~ 33 (261)
|...|+..|..+..-+.+|...+..+.+
T Consensus 54 Lqg~Ldk~er~~~~rIe~L~~~L~~~s~ 81 (390)
T 1deq_A 54 MKGLIDEVDQDFTSRINKLRDSLFNYQK 81 (390)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 5667888888888888777777766654
No 60
>1fjk_A Cardiac phospholamban; helix, membrane protein; NMR {Sus scrofa} SCOP: j.37.1.1 PDB: 1fjp_A 2kyv_A 1zll_A 2hyn_A 1n7l_A 2kb7_P 1plp_A
Probab=46.27 E-value=31 Score=21.27 Aligned_cols=11 Identities=27% Similarity=0.181 Sum_probs=5.0
Q ss_pred HHHHhhhhhHH
Q 042996 204 IGRQVATDKCI 214 (261)
Q Consensus 204 m~rr~~~dK~i 214 (261)
-+|+-.++-++
T Consensus 23 qarqnlqelfv 33 (52)
T 1fjk_A 23 QARQNLQNLFI 33 (52)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 34444454444
No 61
>3gwk_C SAG1039, putative uncharacterized protein SAG1039; WXG motif, four-helical bundle, viral protein; 1.30A {Streptococcus agalactiae serogroup V} PDB: 3gvm_A 3o9o_A
Probab=45.75 E-value=71 Score=21.97 Aligned_cols=20 Identities=10% Similarity=0.082 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 042996 46 ELTDKMRECKRLIKEFDREV 65 (261)
Q Consensus 46 ~i~~~l~ea~~ll~qme~Ev 65 (261)
+++..+..+...+..+.-.|
T Consensus 26 ~i~~~l~~L~~~~~~l~~~W 45 (98)
T 3gwk_C 26 QVTEVLNLLTQEQAVIDENW 45 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHB
T ss_pred HHHHHHHHHHHHHHHHHccc
Confidence 34444455555555555444
No 62
>2pjw_V Vacuolar protein sorting-associated protein 27; GAT domain, core complex, doamin SWAP, endocytosis/exocytosis complex; 3.01A {Saccharomyces cerevisiae}
Probab=45.51 E-value=40 Score=23.99 Aligned_cols=44 Identities=14% Similarity=0.262 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHhhhhchhh-hcchhHHHHHHHHHHHHHHHHHHHH
Q 042996 15 GQITDIFRALSNGFQKLEK-IKDVNRQSRQLEELTDKMRECKRLI 58 (261)
Q Consensus 15 ~~~~~i~~~i~~~~~~L~~-~~~~~~r~~~i~~i~~~l~ea~~ll 58 (261)
.+++.++..+...-++|.+ +....+|...+.++..++..|.++-
T Consensus 33 ~~LqeLy~kv~~lRPKL~r~l~~~~~K~~~L~~mn~Kls~a~rlY 77 (91)
T 2pjw_V 33 SKLQNLAQRVFASKARLNYALNDKAQKYNTLIEMNGKISEIMNIY 77 (91)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666555555555544 2344556666666666666665553
No 63
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=45.46 E-value=60 Score=21.89 Aligned_cols=26 Identities=23% Similarity=0.268 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042996 39 RQSRQLEELTDKMRECKRLIKEFDRE 64 (261)
Q Consensus 39 ~r~~~i~~i~~~l~ea~~ll~qme~E 64 (261)
.+...+.+++..+.+++....++..|
T Consensus 26 RK~~~i~~LE~~v~~le~~~~~l~~e 51 (70)
T 1gd2_E 26 RKEDHLKALETQVVTLKELHSSTTLE 51 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666665555554444333
No 64
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=45.10 E-value=31 Score=21.15 Aligned_cols=10 Identities=30% Similarity=0.288 Sum_probs=4.3
Q ss_pred HHHHHHHhhc
Q 042996 225 VIAIIIVKLV 234 (261)
Q Consensus 225 Ii~vi~~k~~ 234 (261)
.++++|++.-
T Consensus 29 l~~~~~~RRR 38 (44)
T 2jwa_A 29 VVFGILIKRR 38 (44)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHhheehh
Confidence 3344444443
No 65
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=43.70 E-value=1.7e+02 Score=27.45 Aligned_cols=42 Identities=14% Similarity=0.253 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHhhhcCCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 042996 52 RECKRLIKEFDREVKDIEGRNDPETNKMLSEKKQSMVKELNSYVALKKQHQTNL 105 (261)
Q Consensus 52 ~ea~~ll~qme~Ev~~~~~s~~~~~r~~~~~~~~~~~~~l~~~~~~~k~~~~~~ 105 (261)
+++++-|..|+.+|.. ++ ..++.|++.|+.+..+.++++.+|
T Consensus 113 ~ELRRrIqyLKekVdn-----------Ql-snIrvLQsnLedq~~kIQRLEvDI 154 (562)
T 3ghg_A 113 EDLRSRIEVLKRKVIE-----------KV-QHIQLLQKNVRAQLVDMKRLEVDI 154 (562)
T ss_dssp HHHHHHHHHHHHHHHH-----------HH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-----------HH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3777777788888753 23 555666666666666666666555
No 66
>3zbh_A ESXA; unknown function, type 7 secretion, ESAT6 family proteins, W protein ESS; 1.94A {Geobacillus thermodenitrificans}
Probab=43.32 E-value=76 Score=21.63 Aligned_cols=25 Identities=8% Similarity=0.201 Sum_probs=11.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 042996 76 TNKMLSEKKQSMVKELNSYVALKKQ 100 (261)
Q Consensus 76 ~r~~~~~~~~~~~~~l~~~~~~~k~ 100 (261)
....+......+...+.++...+..
T Consensus 50 a~~af~~~~~~~~~~~~~~~~~L~~ 74 (99)
T 3zbh_A 50 SSEAFIQQYQELRPSFEKMAVLLNE 74 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344544444555555554444433
No 67
>1n7s_A Vesicle-associated membrane protein 2; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1kil_A 3rk2_A 3rk3_A 3rl0_A 3fii_B 3g94_B
Probab=42.88 E-value=66 Score=20.80 Aligned_cols=46 Identities=9% Similarity=0.273 Sum_probs=37.1
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042996 149 DQAIERSKQVVHETINVGTETAAVLKAQTEQMSRIVNELDSIHFSI 194 (261)
Q Consensus 149 ~~~L~~s~~~~~ete~ig~~il~~L~~Qre~l~~~~~~l~~i~~~L 194 (261)
.+.|...+..++|+..+-...++.+-...|.|+...++.+.....-
T Consensus 3 ~d~l~~v~~~l~ev~~iM~~NI~~vl~RGekLd~L~~ks~~L~~~s 48 (63)
T 1n7s_A 3 NRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGA 48 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 3567778888888888888888899999999988888877766554
No 68
>3gwk_C SAG1039, putative uncharacterized protein SAG1039; WXG motif, four-helical bundle, viral protein; 1.30A {Streptococcus agalactiae serogroup V} PDB: 3gvm_A 3o9o_A
Probab=42.44 E-value=81 Score=21.66 Aligned_cols=62 Identities=10% Similarity=0.143 Sum_probs=32.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCChHhHHHHHHHHHHHHHHHHHHHHHH
Q 042996 37 VNRQSRQLEELTDKMRECKRLIKEFDREVKDIEGRNDPETNKMLSEKKQSMVKELNSYVALK 98 (261)
Q Consensus 37 ~~~r~~~i~~i~~~l~ea~~ll~qme~Ev~~~~~s~~~~~r~~~~~~~~~~~~~l~~~~~~~ 98 (261)
+++-......+...-.+++..+..|...+..+...=.......|......++..+.++...+
T Consensus 10 ~e~l~~~A~~~~~~~~~i~~~l~~L~~~~~~l~~~W~G~a~~aF~~~~~~~~~~~~~~~~~L 71 (98)
T 3gwk_C 10 PEELRSSAQKYTAGSQQVTEVLNLLTQEQAVIDENWDGSTFDSFEAQFNELSPKITEFAQLL 71 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHBCSSTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555556666666666777777777666654322222223344444444444444444333
No 69
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=42.38 E-value=45 Score=20.19 Aligned_cols=13 Identities=8% Similarity=0.493 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHhh
Q 042996 221 IVIGVIAIIIVKL 233 (261)
Q Consensus 221 l~i~Ii~vi~~k~ 233 (261)
+++++++++.||.
T Consensus 22 llL~li~~~LwK~ 34 (42)
T 2k1a_A 22 LLLTILVLAMWKV 34 (42)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHc
Confidence 5555555666654
No 70
>3zbh_A ESXA; unknown function, type 7 secretion, ESAT6 family proteins, W protein ESS; 1.94A {Geobacillus thermodenitrificans}
Probab=41.67 E-value=81 Score=21.47 Aligned_cols=21 Identities=19% Similarity=0.004 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 042996 79 MLSEKKQSMVKELNSYVALKK 99 (261)
Q Consensus 79 ~~~~~~~~~~~~l~~~~~~~k 99 (261)
.+....+.+...|..+...+.
T Consensus 60 ~~~~~~~~~~~~L~~i~~~L~ 80 (99)
T 3zbh_A 60 ELRPSFEKMAVLLNEVGQQLH 80 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555444443
No 71
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=41.24 E-value=83 Score=21.47 Aligned_cols=56 Identities=20% Similarity=0.266 Sum_probs=34.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 042996 38 NRQSRQLEELTDKMRECKRLIKEFDREVKDIEGRNDPETNKMLSEKKQSMVKELNSYVALKKQHQTNL 105 (261)
Q Consensus 38 ~~r~~~i~~i~~~l~ea~~ll~qme~Ev~~~~~s~~~~~r~~~~~~~~~~~~~l~~~~~~~k~~~~~~ 105 (261)
+.....+..++..+.+++.-..+.+-|+. .+..+++.+..++..+...+......+
T Consensus 16 d~a~~~~~~~e~~l~~~e~~~~~~E~ev~------------~L~kKiq~lE~eld~~ee~l~~a~~kL 71 (81)
T 1ic2_A 16 ENALDRAEQAEADKKAAEERSKQLEDELV------------ALQKKLKGTEDELDKYSESLKDAQEKL 71 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445566667777777777777777764 355666666777776665555444433
No 72
>2pjw_H Uncharacterized protein YHL002W; GAT domain, core complex, doamin SWAP, endocytosis/exocytosis complex; 3.01A {Saccharomyces cerevisiae}
Probab=38.45 E-value=60 Score=22.94 Aligned_cols=48 Identities=8% Similarity=0.270 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHhhhhchhh-hcchhHHHHHHHHHHHHHHHHHHHHHHH
Q 042996 14 NGQITDIFRALSNGFQKLEK-IKDVNRQSRQLEELTDKMRECKRLIKEF 61 (261)
Q Consensus 14 e~~~~~i~~~i~~~~~~L~~-~~~~~~r~~~i~~i~~~l~ea~~ll~qm 61 (261)
+.+++.++.++-.--++|.+ +..-.+|+..+..+..++..|....++|
T Consensus 34 d~eiq~LY~~v~~lRPkL~~li~kysqKk~eL~~Ln~kl~~a~~~Yd~l 82 (88)
T 2pjw_H 34 DPHIGDMYGSVTPLRPQVTRMLGKYAKEKEDMLSLRQVLANAERSYNQL 82 (88)
T ss_dssp CHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666776666655555544 2344566666677777776666654443
No 73
>1k1f_A Breakpoint cluster region protein; oligomerization, coiled coil, BCR-ABL kinase, transferase; 2.20A {Homo sapiens} SCOP: a.147.1.1
Probab=37.24 E-value=45 Score=22.27 Aligned_cols=26 Identities=19% Similarity=0.514 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042996 42 RQLEELTDKMRECKRLIKEFDREVKD 67 (261)
Q Consensus 42 ~~i~~i~~~l~ea~~ll~qme~Ev~~ 67 (261)
..+..++..|+.|+..|+.+|.|++.
T Consensus 26 ~~vgdiEqeLe~Ck~sIrrLE~evn~ 51 (72)
T 1k1f_A 26 RSVGDIEQELERAKASIRRLEQEVNQ 51 (72)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhH
Confidence 34667999999999999999999873
No 74
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=37.15 E-value=1.1e+02 Score=21.87 Aligned_cols=18 Identities=22% Similarity=0.429 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 042996 79 MLSEKKQSMVKELNSYVA 96 (261)
Q Consensus 79 ~~~~~~~~~~~~l~~~~~ 96 (261)
.+.++--.+..+|+.|..
T Consensus 75 ~LRnKA~~L~~eLe~F~~ 92 (96)
T 1t3j_A 75 LLRNKAVQLESELENFSK 92 (96)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455555566666666553
No 75
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=34.27 E-value=1.4e+02 Score=22.19 Aligned_cols=14 Identities=21% Similarity=0.508 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHHHH
Q 042996 51 MRECKRLIKEFDRE 64 (261)
Q Consensus 51 l~ea~~ll~qme~E 64 (261)
|.+....|..++.|
T Consensus 40 i~elrr~iq~L~~e 53 (131)
T 3tnu_A 40 ISELRRTMQNLEIE 53 (131)
T ss_dssp -CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 76
>1xaw_A Occludin; coiled-coil, cell adhesion; 1.45A {Homo sapiens} SCOP: h.4.17.1 PDB: 1wpa_A 3g7c_A
Probab=33.69 E-value=1.5e+02 Score=22.73 Aligned_cols=30 Identities=3% Similarity=0.037 Sum_probs=19.1
Q ss_pred ChHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042996 73 DPETNKMLSEKKQSMVKELNSYVALKKQHQT 103 (261)
Q Consensus 73 ~~~~r~~~~~~~~~~~~~l~~~~~~~k~~~~ 103 (261)
.|++. .-+.+...+++.|..+++....+..
T Consensus 108 dp~y~-ekK~Rc~yL~~KLsHIK~lI~~YD~ 137 (140)
T 1xaw_A 108 SADYK-SKKNHCKQLKSKLSHIKKMVGDYDR 137 (140)
T ss_dssp SHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHH-HHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 34443 3455777777777777777766654
No 77
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=33.67 E-value=2.9e+02 Score=25.48 Aligned_cols=81 Identities=11% Similarity=0.131 Sum_probs=0.0
Q ss_pred CcchhhHHHHHHHHHHHHHHHHHHhhhhchhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCChHhHHHHH
Q 042996 2 DLSSISDDLAEINGQITDIFRALSNGFQKLEKIKDVNRQSRQLEELTDKMRECKRLIKEFDREVKDIEGRNDPETNKMLS 81 (261)
Q Consensus 2 ~~~~~s~~l~~~e~~~~~i~~~i~~~~~~L~~~~~~~~r~~~i~~i~~~l~ea~~ll~qme~Ev~~~~~s~~~~~r~~~~ 81 (261)
++..-.+.++....+++.-.+.+....+...+ ..+++......++..+.+.+.-++.+...+. .+.
T Consensus 499 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~------------~l~ 564 (597)
T 3oja_B 499 GLARSSDNLNKVFTHLKERQAFKLRETQARRT--EADAKQKETEDLEQENIALEKQLDNKRAKQA------------ELR 564 (597)
T ss_dssp SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHH
T ss_pred ccCCHHHHHHHHHHHHHhhhhhhHHHHHHHHH--hhhhhhcchhhHHhhhHHHHHHHhhhhhHHH------------HHH
Q ss_pred HHHHHHHHHHHHHHH
Q 042996 82 EKKQSMVKELNSYVA 96 (261)
Q Consensus 82 ~~~~~~~~~l~~~~~ 96 (261)
.+....++++.++.+
T Consensus 565 ~e~~~~~~~~~~l~~ 579 (597)
T 3oja_B 565 QETSLKRQKVKQLEA 579 (597)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
No 78
>4ioe_A Secreted protein ESXB; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE; 1.44A {Bacillus anthracis} PDB: 4iog_A
Probab=33.43 E-value=1.1e+02 Score=20.59 Aligned_cols=64 Identities=11% Similarity=0.234 Sum_probs=38.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCChHhHHHHHHHHHHHHHHHHHHHHHHH
Q 042996 36 DVNRQSRQLEELTDKMRECKRLIKEFDREVKDIEGRNDPETNKMLSEKKQSMVKELNSYVALKK 99 (261)
Q Consensus 36 ~~~~r~~~i~~i~~~l~ea~~ll~qme~Ev~~~~~s~~~~~r~~~~~~~~~~~~~l~~~~~~~k 99 (261)
++++-......+...-.+++..+..|...+..+...=.......+......+...+.++...+.
T Consensus 10 ~~e~l~~~A~~~~~~~~~i~~~l~~L~~~~~~L~~~W~G~a~~af~~~~~~~~~~~~~~~~~L~ 73 (93)
T 4ioe_A 10 TPEELERIAGNFKNAAGEAQSQINRLEGDINSLEGQWAGATQAKFRGEFIQSKQAMQQYIPILE 73 (93)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666677777777777777777777665444555555666655555544444443333
No 79
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=32.98 E-value=1.3e+02 Score=21.46 Aligned_cols=20 Identities=25% Similarity=0.140 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q 042996 9 DLAEINGQITDIFRALSNGF 28 (261)
Q Consensus 9 ~l~~~e~~~~~i~~~i~~~~ 28 (261)
.|+.++.++..+=..|....
T Consensus 6 ~i~eLq~e~~~~E~QL~~A~ 25 (96)
T 2ic9_A 6 TLKEVQDNITLHEQRLVTTR 25 (96)
T ss_dssp THHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45555555555544433333
No 80
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=32.47 E-value=1.5e+02 Score=27.30 Aligned_cols=51 Identities=14% Similarity=0.208 Sum_probs=34.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhchhhhcchhHHHHHHHHHHHHHHHHHHHHH
Q 042996 7 SDDLAEINGQITDIFRALSNGFQKLEKIKDVNRQSRQLEELTDKMRECKRLIK 59 (261)
Q Consensus 7 s~~l~~~e~~~~~i~~~i~~~~~~L~~~~~~~~r~~~i~~i~~~l~ea~~ll~ 59 (261)
..-|..|+..+..-+++|+..+..|+.. ..+....+..++..+...+....
T Consensus 83 ad~L~kye~~V~~dl~~Le~~l~~isn~--Ts~a~~~v~~ik~s~~~~q~~~~ 133 (461)
T 3ghg_B 83 QEALLQQERPIRNSVDELNNNVEAVSQT--SSSSFQYMYLLKDLWQKRQKQVK 133 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcccchhhHHHHHHHHHHHHHhh--hHHHHHHHHHHHHHhccccCCCC
Confidence 4567888888888888888888777763 34455666666666555544443
No 81
>1afo_A Glycophorin A; integral membrane protein, transmembrane helix interactions, membrane protein folding; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 2kpf_A
Probab=32.42 E-value=43 Score=19.93 Aligned_cols=17 Identities=29% Similarity=0.327 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHhh
Q 042996 217 MLFLIVIGVIAIIIVKL 233 (261)
Q Consensus 217 ~iill~i~Ii~vi~~k~ 233 (261)
+++.=++++|+.+.|.+
T Consensus 18 ~vmaGiIG~IllI~y~I 34 (40)
T 1afo_A 18 GVMAGVIGTILLISYGI 34 (40)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33334455555555544
No 82
>1l4a_A Synaptobrevin; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=32.22 E-value=88 Score=21.34 Aligned_cols=45 Identities=9% Similarity=0.249 Sum_probs=33.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042996 150 QAIERSKQVVHETINVGTETAAVLKAQTEQMSRIVNELDSIHFSI 194 (261)
Q Consensus 150 ~~L~~s~~~~~ete~ig~~il~~L~~Qre~l~~~~~~l~~i~~~L 194 (261)
+.|..++..++|+..|-...++.+-...|.|+...++.+.....-
T Consensus 15 d~l~~vq~el~ev~~iM~~NI~~vLeRGekLd~L~~kt~~L~~~s 59 (80)
T 1l4a_A 15 KRLQQTQAQVEEVVDIMRVNVDKVLERDSKISELDDRADALQAGA 59 (80)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTS
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 345566666777777777778888888888888888887765543
No 83
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=32.13 E-value=59 Score=19.85 Aligned_cols=11 Identities=27% Similarity=0.295 Sum_probs=4.0
Q ss_pred HHHHHHHhhcc
Q 042996 225 VIAIIIVKLVN 235 (261)
Q Consensus 225 Ii~vi~~k~~~ 235 (261)
+++.+++-|++
T Consensus 26 ii~~~~~~~~R 36 (44)
T 2ks1_B 26 VVALGIGLFMR 36 (44)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhh
Confidence 33333333333
No 84
>2dnx_A Syntaxin-12; snare, HABC domain, UP and DOWN three helix bundle, LEFT-handed twist, membrane fusion, vesicle transport, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=32.12 E-value=1.6e+02 Score=21.97 Aligned_cols=62 Identities=19% Similarity=0.222 Sum_probs=37.0
Q ss_pred CcchhhHHHHHHHHHHHHHHHHHHhhhhchhhhcchh----HHHHHHHHHHHHHHHHHHHHHHHHH
Q 042996 2 DLSSISDDLAEINGQITDIFRALSNGFQKLEKIKDVN----RQSRQLEELTDKMRECKRLIKEFDR 63 (261)
Q Consensus 2 ~~~~~s~~l~~~e~~~~~i~~~i~~~~~~L~~~~~~~----~r~~~i~~i~~~l~ea~~ll~qme~ 63 (261)
||...+..+..-=.+|..-+..|+..+..|.+-.+.. .-+....++...+.+....|+++.-
T Consensus 11 ef~~l~~~is~~I~~In~~vs~l~r~v~~LGT~kDt~~LR~kl~~~~~~t~~l~k~ts~~lk~L~~ 76 (130)
T 2dnx_A 11 DFSSIIQTCSGNIQRISQATAQIKNLMSQLGTKQDSSKLQENLQQLQHSTNQLAKETNELLKELGS 76 (130)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566666666666777777777777777776633333 2234444445555666666666554
No 85
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=32.11 E-value=2.8e+02 Score=24.84 Aligned_cols=26 Identities=8% Similarity=0.217 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042996 39 RQSRQLEELTDKMRECKRLIKEFDRE 64 (261)
Q Consensus 39 ~r~~~i~~i~~~l~ea~~ll~qme~E 64 (261)
+....-..++.+|++++.-+-+.+-.
T Consensus 394 e~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (471)
T 3mq9_A 394 EARNVTHLLQQELTEAQKGFQDVEAQ 419 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhhhHHHHHHH
Confidence 44556666777777777766666654
No 86
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=31.79 E-value=2.2e+02 Score=23.59 Aligned_cols=21 Identities=14% Similarity=0.289 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 042996 44 LEELTDKMRECKRLIKEFDRE 64 (261)
Q Consensus 44 i~~i~~~l~ea~~ll~qme~E 64 (261)
+..++..+..++.-+.....+
T Consensus 34 l~~le~~~~~l~~~~~~~~~~ 54 (256)
T 3na7_A 34 LDKALNDKEAKNKAILNLEEE 54 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444433
No 87
>2vs0_A Virulence factor ESXA; secreted, four helical bundle, cell invasion; 1.4A {Staphylococcus aureus} PDB: 2vrz_A
Probab=31.50 E-value=1.2e+02 Score=20.44 Aligned_cols=19 Identities=11% Similarity=0.139 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 042996 47 LTDKMRECKRLIKEFDREV 65 (261)
Q Consensus 47 i~~~l~ea~~ll~qme~Ev 65 (261)
++..+..++..+..+.-.|
T Consensus 25 l~~~l~~L~~~~~~L~~~W 43 (97)
T 2vs0_A 25 IRQILSDLTRAQGEIAANW 43 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHhccc
Confidence 4444444444444444444
No 88
>2nps_A VAMP-4, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Mus musculus}
Probab=30.84 E-value=1.2e+02 Score=20.25 Aligned_cols=57 Identities=21% Similarity=0.274 Sum_probs=36.7
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042996 151 AIERSKQVVHETINVGTETAAVLKAQTEQMSRIVNELDSIHFSIKKASQLVKEIGRQ 207 (261)
Q Consensus 151 ~L~~s~~~~~ete~ig~~il~~L~~Qre~l~~~~~~l~~i~~~L~~s~~~l~~m~rr 207 (261)
.|...+..++|+..|-...++.+-...|.|+...++.++....-..=.+.-+.+.|+
T Consensus 9 ~l~~vq~el~ev~~iM~~NI~~vL~RgekLd~L~~ks~~L~~~s~~F~~~a~~l~r~ 65 (74)
T 2nps_A 9 KIKHVQNQVDEVIDVMQENITKVIERGERLDELQDKSESLSDNATAFSNRSKQLRRQ 65 (74)
T ss_dssp SSHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566667777777777777788888888887777777655544434444444444
No 89
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=30.66 E-value=1.9e+02 Score=22.40 Aligned_cols=28 Identities=7% Similarity=0.027 Sum_probs=12.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042996 38 NRQSRQLEELTDKMRECKRLIKEFDREV 65 (261)
Q Consensus 38 ~~r~~~i~~i~~~l~ea~~ll~qme~Ev 65 (261)
++-....+.++....-+.++.+.++.|+
T Consensus 68 ~~~e~l~~~veeA~~~L~eYn~rL~~E~ 95 (152)
T 4fla_A 68 EAAERLSKTVDEACLLLAEYNGRLAAEL 95 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444
No 90
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=29.84 E-value=2.7e+02 Score=23.96 Aligned_cols=43 Identities=12% Similarity=0.106 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCCChHhHHHHHHHHHHHHHHHHHHHHHHH
Q 042996 50 KMRECKRLIKEFDREVKDIEGRNDPETNKMLSEKKQSMVKELNSYVALKK 99 (261)
Q Consensus 50 ~l~ea~~ll~qme~Ev~~~~~s~~~~~r~~~~~~~~~~~~~l~~~~~~~k 99 (261)
-+.++++-+..+|.++.. +.......++-.++.++-.+++...
T Consensus 172 ~l~~l~~~i~~lE~~l~~-------~~~~~~l~~l~~lrr~l~~lrr~l~ 214 (339)
T 4ev6_A 172 ILMNLEDELEELEDKLLA-------GYDREVMEKILGLRKTLVYFHKSLI 214 (339)
T ss_dssp HHHHHHHHHHHHHHTSTT-------CCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhh-------hhhhhHHHHHHHHHHHHHHHHHHhh
Confidence 344444445555555431 1112344555566666666554443
No 91
>3fav_A ESAT-6-like protein ESXB; complex, operon structure, four-helical-bundle, coiled-coil, WXG-motif, secreted; 2.15A {Mycobacterium tuberculosis} SCOP: a.25.3.1 PDB: 1wa8_A
Probab=28.46 E-value=1.5e+02 Score=20.48 Aligned_cols=62 Identities=10% Similarity=0.073 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 042996 43 QLEELTDKMRECKRLIKEFDREVKDIEGRNDPETNKMLSEKKQSMVKELNSYVALKKQHQTN 104 (261)
Q Consensus 43 ~i~~i~~~l~ea~~ll~qme~Ev~~~~~s~~~~~r~~~~~~~~~~~~~l~~~~~~~k~~~~~ 104 (261)
....+...-.+++..+.+|+-++..+..+=.......|......++....++...+..+...
T Consensus 15 ~A~~~~~~~~~l~~~l~~l~~~~~~L~~~W~G~A~~af~~~~~~w~~~~~~l~~~L~~i~~~ 76 (101)
T 3fav_A 15 EAGNFERISGDLKTQIDQVESTAGSLQGQWRGAAGTAAQAAVVRFQEAANKQKQELDEISTN 76 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566666677777777777766555456666666666666666666666555544443
No 92
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=28.39 E-value=1.4e+02 Score=20.22 Aligned_cols=15 Identities=0% Similarity=-0.194 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHH
Q 042996 85 QSMVKELNSYVALKK 99 (261)
Q Consensus 85 ~~~~~~l~~~~~~~k 99 (261)
..+...+..|+..+-
T Consensus 50 ~ekd~eI~~LqseLD 64 (72)
T 3nmd_A 50 DQKDELIQMLQNELD 64 (72)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444444433
No 93
>2l6w_A Beta-type platelet-derived growth factor receptor; transmembrane helix, receptor tyrosine kinase, heptad repeat membrane protein; NMR {Homo sapiens}
Probab=33.79 E-value=13 Score=22.26 Aligned_cols=10 Identities=20% Similarity=0.252 Sum_probs=4.5
Q ss_pred HHHHHhhccC
Q 042996 227 AIIIVKLVNP 236 (261)
Q Consensus 227 ~vi~~k~~~~ 236 (261)
++++++|.++
T Consensus 26 IiLi~~w~qK 35 (39)
T 2l6w_A 26 IILIMLWQKK 35 (39)
Confidence 4444445443
No 94
>3fav_B ESAT-6, 6 kDa early secretory antigenic target; complex, operon structure, four-helical-bundle, coiled-coil, WXG-motif, secreted; 2.15A {Mycobacterium tuberculosis} SCOP: a.25.3.1 PDB: 1wa8_B
Probab=27.64 E-value=1.4e+02 Score=20.10 Aligned_cols=59 Identities=5% Similarity=0.027 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042996 45 EELTDKMRECKRLIKEFDREVKDIEGRNDPETNKMLSEKKQSMVKELNSYVALKKQHQT 103 (261)
Q Consensus 45 ~~i~~~l~ea~~ll~qme~Ev~~~~~s~~~~~r~~~~~~~~~~~~~l~~~~~~~k~~~~ 103 (261)
..+.....+++..|.+|+..+..+..+=..+....|......+......+...+..+..
T Consensus 15 ~~~~~~~~~i~~~l~~l~~~v~~l~~~W~G~A~~af~~~~~~w~~~~~~~~~~L~~i~~ 73 (94)
T 3fav_B 15 SAIQGNVTSIHSLLDEGKQSLTKLAAAWGGSGSEAYQGVQQKWDATATELNNALQNLAR 73 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTGGGGTCTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555555554432222333344555555555555555544444433
No 95
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=27.53 E-value=1.9e+02 Score=21.42 Aligned_cols=19 Identities=16% Similarity=0.370 Sum_probs=8.4
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 042996 7 SDDLAEINGQITDIFRALS 25 (261)
Q Consensus 7 s~~l~~~e~~~~~i~~~i~ 25 (261)
.+++..+...++.+-.+|+
T Consensus 35 k~Ei~elrr~iq~L~~el~ 53 (129)
T 3tnu_B 35 KHEISEMNRMIQRLRAEID 53 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444443333
No 96
>4e81_A Chaperone protein DNAK; chaperone; 1.90A {Escherichia coli} PDB: 3dpp_A* 3dpq_A* 3qnj_A 3dpo_A 1dkz_A 1dky_A 1dkx_A 1bpr_A 2bpr_A 1dg4_A
Probab=27.12 E-value=2.5e+02 Score=22.77 Aligned_cols=37 Identities=5% Similarity=0.194 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHhhhcCCCChHhHHHHHHHHHHHH
Q 042996 52 RECKRLIKEFDREVKDIEGRNDPETNKMLSEKKQSMV 88 (261)
Q Consensus 52 ~ea~~ll~qme~Ev~~~~~s~~~~~r~~~~~~~~~~~ 88 (261)
.+++.++.+++.-+.......+++.|.++...+..+.
T Consensus 149 n~le~~i~~~~~~l~~~~~~l~~~~k~~i~~~l~~~~ 185 (219)
T 4e81_A 149 NQGDHLLHSTRKQVEEAGDKLPADDKTAIESALTALE 185 (219)
T ss_dssp HHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhCCHHHHHHHHHHHHHHH
Confidence 3445555555544433222345555555555444433
No 97
>1gl2_A Endobrevin; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=26.86 E-value=1.3e+02 Score=19.48 Aligned_cols=45 Identities=13% Similarity=0.245 Sum_probs=31.1
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042996 149 DQAIERSKQVVHETINVGTETAAVLKAQTEQMSRIVNELDSIHFS 193 (261)
Q Consensus 149 ~~~L~~s~~~~~ete~ig~~il~~L~~Qre~l~~~~~~l~~i~~~ 193 (261)
.+.|..++..++|+..|-..-++.+-...|.|+...++.++....
T Consensus 8 ~d~l~~vq~~l~evk~iM~~NI~~vL~RgekLd~L~~ks~~L~~~ 52 (65)
T 1gl2_A 8 NDRVRNLQSEVEGVKNIMTQNVERILARGENLDHLRNKTEDLEAT 52 (65)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 345666666777777777777888888888888777776665443
No 98
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=26.85 E-value=1.9e+02 Score=21.23 Aligned_cols=13 Identities=31% Similarity=0.478 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHH
Q 042996 80 LSEKKQSMVKELN 92 (261)
Q Consensus 80 ~~~~~~~~~~~l~ 92 (261)
++.++.+++.++.
T Consensus 88 LE~~iesL~eEl~ 100 (119)
T 3ol1_A 88 LERKVESLQEEIA 100 (119)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444444
No 99
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=26.62 E-value=1.8e+02 Score=20.84 Aligned_cols=20 Identities=10% Similarity=0.247 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 042996 47 LTDKMRECKRLIKEFDREVK 66 (261)
Q Consensus 47 i~~~l~ea~~ll~qme~Ev~ 66 (261)
++....+.+.-|++|+.|+.
T Consensus 45 Vd~t~~eL~~EI~~L~~eI~ 64 (96)
T 1t3j_A 45 VDMTQKHLEEEIARLSKEID 64 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444444555555555553
No 100
>3qb5_K Translin-associated protein X; alpha helical bundle, ribonuclease, hydrolase; 2.95A {Homo sapiens} PDB: 3pja_J
Probab=26.00 E-value=2.9e+02 Score=23.60 Aligned_cols=52 Identities=15% Similarity=0.208 Sum_probs=33.8
Q ss_pred HHHHHHHHHHhh----hhchhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042996 16 QITDIFRALSNG----FQKLEKIKDVNRQSRQLEELTDKMRECKRLIKEFDREVKD 67 (261)
Q Consensus 16 ~~~~i~~~i~~~----~~~L~~~~~~~~r~~~i~~i~~~l~ea~~ll~qme~Ev~~ 67 (261)
++-.+.++|+.. +-.|++..........+.+++..+.++..++.++-.++..
T Consensus 55 riik~sRdIt~~SK~~If~LhR~~~~~~~~~il~ea~~~L~~i~~~~~~La~~l~~ 110 (290)
T 3qb5_K 55 RLVKLSRDITVESKRTIFLLHRITSAPDMEDILTESEIKLDGVRQKIFQVAQELSG 110 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 444455566643 3335553221235678899999999999999998888753
No 101
>1i6z_A BAG-family molecular chaperone regulator-1; triple helix bundle; NMR {Mus musculus} SCOP: a.7.7.1
Probab=25.82 E-value=2.2e+02 Score=21.66 Aligned_cols=63 Identities=16% Similarity=0.196 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCh--HhHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 042996 41 SRQLEELTDKMRECKRLIKEFDREVKDIEGRNDP--ETNKMLSEKKQSMVKELNSYVALKKQHQTNL 105 (261)
Q Consensus 41 ~~~i~~i~~~l~ea~~ll~qme~Ev~~~~~s~~~--~~r~~~~~~~~~~~~~l~~~~~~~k~~~~~~ 105 (261)
...-+.+....+++-+.|.+||--. +|.+... ..|..+-.+++.+-....++...++.+...+
T Consensus 62 ~kl~Krik~~~E~~Mk~LE~LDs~~--ip~~~~~~R~kRK~lV~~iQ~~L~~~D~l~~~~~~~~~~~ 126 (135)
T 1i6z_A 62 CKLDRKVKATIEQFMKILEEIDTMV--LPEQFKDSRLKRKNLVKKVQVFLAECDTVEQYICQETERL 126 (135)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCC--CCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccc--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444566777777788888888553 2444432 2455666777777777777776666554443
No 102
>2gsm_B Cytochrome C oxidase subunit 2; transmembrane protein complex, oxidoreductase; HET: DMU HEA TRD; 2.00A {Rhodobacter sphaeroides} SCOP: b.6.1.2 f.17.2.1 PDB: 3dtu_B* 3fye_B* 3fyi_B* 3omi_B* 3om3_B* 3oma_B* 3omn_B* 1m56_B* 1m57_B*
Probab=25.15 E-value=80 Score=26.77 Aligned_cols=13 Identities=15% Similarity=0.122 Sum_probs=5.5
Q ss_pred HHHHHHHHHHhhc
Q 042996 222 VIGVIAIIIVKLV 234 (261)
Q Consensus 222 ~i~Ii~vi~~k~~ 234 (261)
++++++++++|+-
T Consensus 47 V~~ll~~~~~r~r 59 (262)
T 2gsm_B 47 VTLLILYAVWRFH 59 (262)
T ss_dssp HHHHHHHHHHHSB
T ss_pred HHHHHHHHHHHHh
Confidence 3333344444443
No 103
>1svf_B Protein (fusion glycoprotein); paramyxovirus, SV5, coiled-coil, viral protein; 1.40A {Simian virus 5} SCOP: h.3.2.1
Probab=25.12 E-value=71 Score=18.77 Aligned_cols=24 Identities=4% Similarity=0.170 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 042996 180 MSRIVNELDSIHFSIKKASQLVKE 203 (261)
Q Consensus 180 l~~~~~~l~~i~~~L~~s~~~l~~ 203 (261)
|..+...+.....-|..|+.+|..
T Consensus 14 L~~~n~sl~~A~~~l~~Sn~~L~~ 37 (38)
T 1svf_B 14 LAAVNKSLSDALQHLAQSDTYLSA 37 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc
Confidence 444555555555555556555543
No 104
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=24.88 E-value=1.5e+02 Score=19.46 Aligned_cols=29 Identities=7% Similarity=0.318 Sum_probs=21.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042996 38 NRQSRQLEELTDKMRECKRLIKEFDREVK 66 (261)
Q Consensus 38 ~~r~~~i~~i~~~l~ea~~ll~qme~Ev~ 66 (261)
.+|...+..|+..|.++..+..+|-..|.
T Consensus 2 ~eR~~ei~~ie~~i~eL~~iF~dla~lV~ 30 (71)
T 2nps_B 2 SMRETAIQQLEADILDVNQIFKDLAMMIH 30 (71)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777777788888888777777777764
No 105
>2vs0_A Virulence factor ESXA; secreted, four helical bundle, cell invasion; 1.4A {Staphylococcus aureus} PDB: 2vrz_A
Probab=24.39 E-value=1.6e+02 Score=19.69 Aligned_cols=64 Identities=8% Similarity=0.194 Sum_probs=34.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCChHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 042996 37 VNRQSRQLEELTDKMRECKRLIKEFDREVKDIEGRNDPETNKMLSEKKQSMVKELNSYVALKKQ 100 (261)
Q Consensus 37 ~~~r~~~i~~i~~~l~ea~~ll~qme~Ev~~~~~s~~~~~r~~~~~~~~~~~~~l~~~~~~~k~ 100 (261)
+++-......+...-.+++..+.+|+..+..+...=.......|......++..+.++...+..
T Consensus 8 ~~~l~~~A~~~~~~~~~l~~~l~~L~~~~~~L~~~W~G~a~~af~~~~~~~~~~~~~~~~~L~~ 71 (97)
T 2vs0_A 8 PEEIRAKSQSYGQGSDQIRQILSDLTRAQGEIAANWEGQAFSRFEEQFQQLSPKVEKFAQLLEE 71 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555666677777777777777777766533223333334444444445455544444433
No 106
>2dnx_A Syntaxin-12; snare, HABC domain, UP and DOWN three helix bundle, LEFT-handed twist, membrane fusion, vesicle transport, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.29 E-value=2.2e+02 Score=21.11 Aligned_cols=62 Identities=16% Similarity=0.250 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhchhhh----cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 042996 8 DDLAEINGQITDIFRALSNGFQKLEKI----KDVNRQSRQLEELTDKMRECKRLIKEFDREVKDIE 69 (261)
Q Consensus 8 ~~l~~~e~~~~~i~~~i~~~~~~L~~~----~~~~~r~~~i~~i~~~l~ea~~ll~qme~Ev~~~~ 69 (261)
.+|..+-+.+...+..|...+..|.++ ..+-.-...=..+......+.++++....-|..+.
T Consensus 10 ~ef~~l~~~is~~I~~In~~vs~l~r~v~~LGT~kDt~~LR~kl~~~~~~t~~l~k~ts~~lk~L~ 75 (130)
T 2dnx_A 10 RDFSSIIQTCSGNIQRISQATAQIKNLMSQLGTKQDSSKLQENLQQLQHSTNQLAKETNELLKELG 75 (130)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777777777777777776666553 11112123344444445555666666665555543
No 107
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=23.88 E-value=3.6e+02 Score=23.42 Aligned_cols=47 Identities=11% Similarity=0.075 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCCChHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 042996 47 LTDKMRECKRLIKEFDREVKDIEGRNDPETNKMLSEKKQSMVKELNSYVALKKQ 100 (261)
Q Consensus 47 i~~~l~ea~~ll~qme~Ev~~~~~s~~~~~r~~~~~~~~~~~~~l~~~~~~~k~ 100 (261)
.-.-++++++-++.+|.++..- .. .....++-.++.++-.+++....
T Consensus 193 y~~~l~~l~~~id~lE~~v~~~---~~----~~~l~~l~~lrr~l~~lrr~l~p 239 (363)
T 2iub_A 193 YFVLLEKIDDEIDVLEEEVLER---PE----KETVQRTHQLKRNLVELRKTIWP 239 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSS---CC----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcC---CC----hHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444566666666667776421 11 23345566666666666554443
No 108
>2oez_A UPF0289 protein VP2528; immunoglobulin fold, alpha-structure, structural genomics, P protein structure initiative; HET: MSE; 1.97A {Vibrio parahaemolyticus} SCOP: e.68.1.1
Probab=23.70 E-value=1.2e+02 Score=25.51 Aligned_cols=54 Identities=17% Similarity=0.244 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH---HHHHhhhhhHHHHH
Q 042996 164 NVGTETAAVLKAQTEQMSRIV-------NELDSIHFSIKKASQLVKE---IGRQVATDKCIMAM 217 (261)
Q Consensus 164 ~ig~~il~~L~~Qre~l~~~~-------~~l~~i~~~L~~s~~~l~~---m~rr~~~dK~i~~~ 217 (261)
++=.+++.+|.+|+.++..-. +.++.+-+.++.+...|.. ++.....|+|++.+
T Consensus 59 dlK~eLlKeLERq~~~L~~~~~~P~Vd~~~l~~~l~~l~~~~~~L~~~~r~Gq~Lrede~L~~i 122 (247)
T 2oez_A 59 QLKSELAKDLEKQRLSYRHWLNVEGVDQEALNSLLNEIDVVHSQLMGAERFGQALKEDRFLSSI 122 (247)
T ss_dssp CHHHHHHHHHHHHHHHHHTTTTCTTSCHHHHHHHHHHHHHHHHHHHHCCSTTHHHHHCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHHHHHHHHhcCcccchhhHhHHHHHH
Confidence 456788999999999998853 7778888888888877766 44456788888765
No 109
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=23.43 E-value=2e+02 Score=20.26 Aligned_cols=58 Identities=14% Similarity=0.113 Sum_probs=29.1
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHhhhhchhhhcchhHHHHHHHHHHHHHHHHHHHHHHH
Q 042996 3 LSSISDDLAEINGQITDIFRALSNGFQKLEKIKDVNRQSRQLEELTDKMRECKRLIKEF 61 (261)
Q Consensus 3 ~~~~s~~l~~~e~~~~~i~~~i~~~~~~L~~~~~~~~r~~~i~~i~~~l~ea~~ll~qm 61 (261)
|++|-.+|..+-.++...+..|...-+. .+-....+....+.+++.-|.+.+--+..+
T Consensus 3 F~~YE~df~~~~~~i~~~l~~~~~~~ge-~Rk~~i~~ie~~ldEA~ell~qMelE~~~~ 60 (97)
T 3onj_A 3 LISYESDFKTTLEQAKASLAEAPSQPLS-QRNTTLKHVEQQQDELFDLLDQMDVEVNNS 60 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHGGGSCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccChH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4567777777777777777666533221 110111223344445555555444444444
No 110
>3tul_A Cell invasion protein SIPB; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.79A {Salmonella enterica subsp}
Probab=22.52 E-value=2.7e+02 Score=21.52 Aligned_cols=55 Identities=4% Similarity=0.022 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCCCChHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 042996 44 LEELTDKMRECKRLIKEFDREVKDIEGRNDPETNKMLSEKKQSMVKELNSYVALKKQ 100 (261)
Q Consensus 44 i~~i~~~l~ea~~ll~qme~Ev~~~~~s~~~~~r~~~~~~~~~~~~~l~~~~~~~k~ 100 (261)
+...+..+..++.-+++.+.++..+.+..|.. .+...-+.++..++.+.++...+
T Consensus 71 ~~sA~~~~d~lekKl~~aq~kL~~L~P~~P~Y--ak~~a~~~q~~~d~~~~~~~~~k 125 (158)
T 3tul_A 71 TDTAKSVYDAATKKLTQAQNKLQSLDPADPGY--AQAEAAVEQAGKEATEAKEALDK 125 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTC---------CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHhcCCCCCcch--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555556666666677776665544442 35666677777777777655433
No 111
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=21.45 E-value=2.2e+02 Score=20.17 Aligned_cols=50 Identities=6% Similarity=0.115 Sum_probs=28.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCChHhHHHHHHHHHHHHHHHHHHHHHHH
Q 042996 38 NRQSRQLEELTDKMRECKRLIKEFDREVKDIEGRNDPETNKMLSEKKQSMVKELNSYVALKK 99 (261)
Q Consensus 38 ~~r~~~i~~i~~~l~ea~~ll~qme~Ev~~~~~s~~~~~r~~~~~~~~~~~~~l~~~~~~~k 99 (261)
+........++..+..++.-..+.+-|+.. +..+++.+..++..+...++
T Consensus 19 e~a~drae~~e~~~k~~e~~~~~~E~Ei~s------------L~kk~~~lE~eld~~ee~L~ 68 (101)
T 3u1c_A 19 ENALDRAEQAEADKKAAEERSKQLEDDIVQ------------LEKQLRVTEDSRDQVLEELH 68 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHH------------HHHHHHHHHHHHHHHHHHHH
Confidence 334445566677777777777777777643 33445555555555554443
No 112
>2w1k_A Putative sortase; pilus, pneumococcus, pathogenicity, transferase; HET: MES; 2.14A {Streptococcus pneumoniae}
Probab=21.33 E-value=20 Score=30.46 Aligned_cols=25 Identities=16% Similarity=0.122 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCC
Q 042996 213 CIMAMLFLIVIGVIAIIIVKLVNPN 237 (261)
Q Consensus 213 ~i~~~iill~i~Ii~vi~~k~~~~~ 237 (261)
|.+.+++++.+++|+++++++.|..
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (252)
T 2w1k_A 225 WLYRGLVVLAFLGILFVLWKLARLL 249 (252)
T ss_dssp -------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444443333333445556666543
No 113
>4i0x_B ESAT-6-like protein MAB_3113; structural genomics, PSI-2, protein structure initiative, in center for structure and function innovation; HET: BME GOL; 1.96A {Mycobacterium abscessus}
Probab=21.15 E-value=2.1e+02 Score=19.84 Aligned_cols=57 Identities=5% Similarity=0.000 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCC--CChHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042996 47 LTDKMRECKRLIKEFDREVKDIEGR--NDPETNKMLSEKKQSMVKELNSYVALKKQHQT 103 (261)
Q Consensus 47 i~~~l~ea~~ll~qme~Ev~~~~~s--~~~~~r~~~~~~~~~~~~~l~~~~~~~k~~~~ 103 (261)
+.....+++..|.+|+-.+..+..+ =..+....|.............+...+..+..
T Consensus 23 ~~~~~~~i~~~l~~L~~~v~~L~~~g~W~G~A~~ay~~~~~~W~~~a~~l~~~L~~i~~ 81 (103)
T 4i0x_B 23 ARGFKEFVTENLDQLESRAQKLVQSGQWAGAAAAAYSQAHKEWMDAARELVEGLSQMEE 81 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCeechHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444433322 23344455555555555555555544444433
No 114
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=21.09 E-value=1.9e+02 Score=19.16 Aligned_cols=23 Identities=22% Similarity=0.382 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 042996 43 QLEELTDKMRECKRLIKEFDREV 65 (261)
Q Consensus 43 ~i~~i~~~l~ea~~ll~qme~Ev 65 (261)
.+...+..|.++...|..++.|+
T Consensus 50 ~l~~~k~Ei~elrr~iq~L~~el 72 (77)
T 3trt_A 50 ALRQAKQESTEYRRQVQSLTMEV 72 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555554
No 115
>2dw3_A Intrinsic membrane protein PUFX; quinone exchange, photosynthesis, light- harvesting, GXXXG motif, dimerization; NMR {Rhodobacter sphaeroides} PDB: 2ita_A
Probab=20.95 E-value=1.5e+02 Score=20.22 Aligned_cols=9 Identities=11% Similarity=0.087 Sum_probs=3.8
Q ss_pred CccCCCCCC
Q 042996 239 KDIRDIPGL 247 (261)
Q Consensus 239 ~~~~~~~~~ 247 (261)
..-.+.|+|
T Consensus 56 E~Sr~aP~P 64 (77)
T 2dw3_A 56 IQENQAPAP 64 (77)
T ss_dssp TTCSSCSSC
T ss_pred hhcccCCCC
Confidence 333445533
No 116
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=20.89 E-value=2.8e+02 Score=20.99 Aligned_cols=22 Identities=18% Similarity=0.250 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 042996 82 EKKQSMVKELNSYVALKKQHQT 103 (261)
Q Consensus 82 ~~~~~~~~~l~~~~~~~k~~~~ 103 (261)
..+..++.+++.++....+++.
T Consensus 110 ~e~~~l~~~~~~l~~~~~~le~ 131 (138)
T 3hnw_A 110 KEIKELKSEINKYQKNIVKLET 131 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444433
No 117
>4afl_A P29ING4, inhibitor of growth protein 4; cell cycle, tumour suppressor, chromatin remodelling; 2.28A {Homo sapiens}
Probab=20.30 E-value=2.3e+02 Score=19.91 Aligned_cols=50 Identities=8% Similarity=0.209 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhchhh-h--cchhHHHHHHHHHHHHHHHHHHH
Q 042996 8 DDLAEINGQITDIFRALSNGFQKLEK-I--KDVNRQSRQLEELTDKMRECKRL 57 (261)
Q Consensus 8 ~~l~~~e~~~~~i~~~i~~~~~~L~~-~--~~~~~r~~~i~~i~~~l~ea~~l 57 (261)
+++-.++..+.....+|.+.+.+.-+ . -.+++|...+..|...+..+..+
T Consensus 25 ~~irelD~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~l~~I~~~~~~~~~l 77 (104)
T 4afl_A 25 QLMRDLDQRTEDLKAEIDKLATEYMSSARSLSSEEKLALLKQIQEAYGKCKEF 77 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCCSCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCChhhhHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444333211 0 02334444444444444444444
Done!