BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042997
(258 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4GGQ|C Chain C, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase From Burkholderia Pseudomallei
Complexed With Cj40
pdb|4GGQ|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase From Burkholderia Pseudomallei
Complexed With Cj40
pdb|4GGQ|B Chain B, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase From Burkholderia Pseudomallei
Complexed With Cj40
pdb|4GGQ|D Chain D, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase From Burkholderia Pseudomallei
Complexed With Cj40
Length = 209
Score = 65.5 bits (158), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 48/120 (40%), Positives = 62/120 (51%), Gaps = 10/120 (8%)
Query: 134 VVLPNGIRYYELKVGGGATPRRGDLVVIDLRGEVEGSGQVFVDTFGGNKKPLALVMGSRP 193
V +G++Y +L G GA R G V + G + GQ F D+ P A V+G
Sbjct: 100 VTTESGLKYEDLTEGSGAEARAGQTVSVHYTGWLT-DGQKF-DSSKDRNDPFAFVLGGGM 157
Query: 194 YGKGMCEGIEYVLRSMKVGGKRRVIIPPNLAFGANGADLGDGVQIPPFATLEYIVEVEKV 253
KG EG++ MKVGG RR+ IPP L +GA GA G IPP ATL + VE+ V
Sbjct: 158 VIKGWDEGVQ----GMKVGGVRRLTIPPQLGYGARGA----GGVIPPNATLVFEVELLDV 209
>pdb|3VAW|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation V3i From
Burkholderia Pseudomallei Complexed With Fk506
Length = 209
Score = 65.5 bits (158), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 48/120 (40%), Positives = 62/120 (51%), Gaps = 10/120 (8%)
Query: 134 VVLPNGIRYYELKVGGGATPRRGDLVVIDLRGEVEGSGQVFVDTFGGNKKPLALVMGSRP 193
V +G++Y +L G GA R G V + G + GQ F D+ P A V+G
Sbjct: 100 VTTESGLKYEDLTEGSGAEARAGQTVSVHYTGWLT-DGQKF-DSSKDRNDPFAFVLGGGM 157
Query: 194 YGKGMCEGIEYVLRSMKVGGKRRVIIPPNLAFGANGADLGDGVQIPPFATLEYIVEVEKV 253
KG EG++ MKVGG RR+ IPP L +GA GA G IPP ATL + VE+ V
Sbjct: 158 VIKGWDEGVQ----GMKVGGVRRLTIPPQLGYGARGA----GGVIPPNATLVFEVELLDV 209
>pdb|4DZ3|A Chain A, Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase
With Surface Mutation M61h From Burkholderia
Pseudomallei Complexed With Fk506
pdb|4DZ3|B Chain B, Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase
With Surface Mutation M61h From Burkholderia
Pseudomallei Complexed With Fk506
Length = 113
Score = 65.5 bits (158), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 48/120 (40%), Positives = 62/120 (51%), Gaps = 10/120 (8%)
Query: 134 VVLPNGIRYYELKVGGGATPRRGDLVVIDLRGEVEGSGQVFVDTFGGNKKPLALVMGSRP 193
V +G++Y +L G GA R G V + G + GQ F D+ P A V+G
Sbjct: 4 VTTESGLKYEDLTEGSGAEARAGQTVSVHYTGWLT-DGQKF-DSSKDRNDPFAFVLGGGH 61
Query: 194 YGKGMCEGIEYVLRSMKVGGKRRVIIPPNLAFGANGADLGDGVQIPPFATLEYIVEVEKV 253
KG EG++ MKVGG RR+ IPP L +GA GA G IPP ATL + VE+ V
Sbjct: 62 VIKGWDEGVQ----GMKVGGVRRLTIPPQLGYGARGA----GGVIPPNATLVFEVELLDV 113
>pdb|3UF8|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With A G95a Surface Mutation From
Burkholderia Pseudomallei Complexed With Fk506
Length = 209
Score = 64.3 bits (155), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 49/120 (40%), Positives = 63/120 (52%), Gaps = 10/120 (8%)
Query: 134 VVLPNGIRYYELKVGGGATPRRGDLVVIDLRGEVEGSGQVFVDTFGGNKKPLALVMGSRP 193
V +G++Y +L G GA R G V + G + GQ F D+ P A V+G
Sbjct: 100 VTTESGLKYEDLTEGSGAEARAGQTVSVHYTGWLT-DGQKF-DSSKDRNDPFAFVLGGGM 157
Query: 194 YGKGMCEGIEYVLRSMKVGGKRRVIIPPNLAFGANGADLGDGVQIPPFATLEYIVEVEKV 253
KG EG++ MKVGG RR+ IPP L +GA GA GV IPP ATL + VE+ V
Sbjct: 158 VIKGWDEGVQ----GMKVGGVRRLTIPPQLGYGARGA---AGV-IPPNATLVFEVELLDV 209
>pdb|2KE0|A Chain A, Solution Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Burkholderia Pseudomallei
pdb|2KO7|A Chain A, Solution Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Burkholderia Pseudomallei Complexed With
Cycloheximide-N- Ethylethanoate
pdb|2L2S|A Chain A, Solution Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Burkholderia Pseudomallei Complexed With
1-{[(4-Methylphenyl) Thio]acetyl}piperidine
Length = 117
Score = 63.9 bits (154), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 48/120 (40%), Positives = 62/120 (51%), Gaps = 10/120 (8%)
Query: 134 VVLPNGIRYYELKVGGGATPRRGDLVVIDLRGEVEGSGQVFVDTFGGNKKPLALVMGSRP 193
V +G++Y +L G GA R G V + G + GQ F D+ P A V+G
Sbjct: 8 VTTESGLKYEDLTEGSGAEARAGQTVSVHYTGWLT-DGQKF-DSSKDRNDPFAFVLGGGM 65
Query: 194 YGKGMCEGIEYVLRSMKVGGKRRVIIPPNLAFGANGADLGDGVQIPPFATLEYIVEVEKV 253
KG EG++ MKVGG RR+ IPP L +GA GA G IPP ATL + VE+ V
Sbjct: 66 VIKGWDEGVQ----GMKVGGVRRLTIPPQLGYGARGA----GGVIPPNATLVFEVELLDV 117
>pdb|2Y78|A Chain A, Crystal Structure Of Bpss1823, A Mip-Like Chaperone From
Burkholderia Pseudomallei
Length = 133
Score = 63.9 bits (154), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 48/120 (40%), Positives = 62/120 (51%), Gaps = 10/120 (8%)
Query: 134 VVLPNGIRYYELKVGGGATPRRGDLVVIDLRGEVEGSGQVFVDTFGGNKKPLALVMGSRP 193
V +G++Y +L G GA R G V + G + GQ F D+ P A V+G
Sbjct: 24 VTTESGLKYEDLTEGSGAEARAGQTVSVHYTGWLT-DGQKF-DSSKDRNDPFAFVLGGGM 81
Query: 194 YGKGMCEGIEYVLRSMKVGGKRRVIIPPNLAFGANGADLGDGVQIPPFATLEYIVEVEKV 253
KG EG++ MKVGG RR+ IPP L +GA GA G IPP ATL + VE+ V
Sbjct: 82 VIKGWDEGVQ----GMKVGGVRRLTIPPQLGYGARGA----GGVIPPNATLVFEVELLDV 133
>pdb|3UQA|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation A54e From
Burkholderia Pseudomallei Complexed With Fk506
Length = 209
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/120 (39%), Positives = 61/120 (50%), Gaps = 10/120 (8%)
Query: 134 VVLPNGIRYYELKVGGGATPRRGDLVVIDLRGEVEGSGQVFVDTFGGNKKPLALVMGSRP 193
V +G++Y +L G GA R G V + G + GQ F D+ P V+G
Sbjct: 100 VTTESGLKYEDLTEGSGAEARAGQTVSVHYTGWLT-DGQKF-DSSKDRNDPFEFVLGGGM 157
Query: 194 YGKGMCEGIEYVLRSMKVGGKRRVIIPPNLAFGANGADLGDGVQIPPFATLEYIVEVEKV 253
KG EG++ MKVGG RR+ IPP L +GA GA G IPP ATL + VE+ V
Sbjct: 158 VIKGWDEGVQ----GMKVGGVRRLTIPPQLGYGARGA----GGVIPPNATLVFEVELLDV 209
>pdb|3UQB|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Fk506
pdb|4FN2|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj37
pdb|4FN2|B Chain B, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj37
pdb|4G50|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj168
pdb|4G50|B Chain B, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj168
pdb|4GIV|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj183
pdb|4GIV|B Chain B, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj183
Length = 209
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/132 (37%), Positives = 65/132 (49%), Gaps = 10/132 (7%)
Query: 122 EASTRNVEKEEEVVLPNGIRYYELKVGGGATPRRGDLVVIDLRGEVEGSGQVFVDTFGGN 181
EA + V +G++Y +L G GA R G V + G + GQ F + N
Sbjct: 88 EAHREQIGGSTVVTTESGLKYEDLTEGSGAEARAGQTVSVHYTGWLT-DGQKFGSSKDRN 146
Query: 182 KKPLALVMGSRPYGKGMCEGIEYVLRSMKVGGKRRVIIPPNLAFGANGADLGDGVQIPPF 241
P A V+G KG EG++ MKVGG RR+ IPP L +GA GA G IPP
Sbjct: 147 D-PFAFVLGGGMVIKGWDEGVQ----GMKVGGVRRLTIPPQLGYGARGA----GGVIPPN 197
Query: 242 ATLEYIVEVEKV 253
ATL + VE+ V
Sbjct: 198 ATLVFEVELLDV 209
>pdb|4DZ2|A Chain A, Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase
With Surface Mutation R92g From Burkholderia
Pseudomallei Complexed With Fk506
pdb|4DZ2|B Chain B, Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase
With Surface Mutation R92g From Burkholderia
Pseudomallei Complexed With Fk506
Length = 113
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/120 (39%), Positives = 61/120 (50%), Gaps = 10/120 (8%)
Query: 134 VVLPNGIRYYELKVGGGATPRRGDLVVIDLRGEVEGSGQVFVDTFGGNKKPLALVMGSRP 193
V +G++Y +L G GA R G V + G + GQ F D+ P A V+G
Sbjct: 4 VTTESGLKYEDLTEGSGAEARAGQTVSVHYTGWLT-DGQKF-DSSKDRNDPFAFVLGGGM 61
Query: 194 YGKGMCEGIEYVLRSMKVGGKRRVIIPPNLAFGANGADLGDGVQIPPFATLEYIVEVEKV 253
KG EG++ MKVGG RR+ IPP L +GA GA IPP ATL + VE+ V
Sbjct: 62 VIKGWDEGVQ----GMKVGGVRRLTIPPQLGYGAGGAG----GVIPPNATLVFEVELLDV 113
>pdb|4DIP|A Chain A, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|B Chain B, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|C Chain C, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|D Chain D, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|E Chain E, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|F Chain F, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|G Chain G, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|H Chain H, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|I Chain I, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|J Chain J, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
Length = 125
Score = 50.8 bits (120), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 55/105 (52%), Gaps = 10/105 (9%)
Query: 154 RRGDLVVIDLRGEVEGSGQVFVDTFGGNK-KPLALVMGSRPYGKGMCEGIEYVLRSMKVG 212
+ GDL+++ G +E G +F T N +P+ +G KG +G L+ M VG
Sbjct: 30 KGGDLMLVHYEGYLEKDGSLFHSTHKHNNGQPIWFTLGILEALKGWDQG----LKGMCVG 85
Query: 213 GKRRVIIPPNLAFGANGADLGDGVQIPPFATLEYIVEVEKVSIAP 257
KR++IIPP L +G G +IPP +TL + +++ ++ P
Sbjct: 86 EKRKLIIPPALGYGKEGKG-----KIPPESTLIFNIDLLEIRNGP 125
>pdb|2PPO|A Chain A, Crystal Structure Of E60a Mutant Of Fkbp12
Length = 107
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 60/116 (51%), Gaps = 11/116 (9%)
Query: 139 GIRYYELKVGGGAT-PRRGDLVVIDLRGEVEGSGQVFVDTFGGNKKPLALVMGSRPYGKG 197
G++ + G G T P+RG V+ G +E G+ F D+ KP ++G + +G
Sbjct: 1 GVQVETISPGDGRTFPKRGQTCVVHYTGMLE-DGKKF-DSSRDRNKPFKFMLGKQEVIRG 58
Query: 198 MCEGIEYVLRSMKVGGKRRVIIPPNLAFGANGADLGDGVQIPPFATLEYIVEVEKV 253
EG+ M VG + ++ I P+ A+GA G G+ IPP ATL + VE+ K+
Sbjct: 59 WAEGVA----QMSVGQRAKLTISPDYAYGATGHP---GI-IPPHATLVFDVELLKL 106
>pdb|2DG9|A Chain A, Fk506-Binding Protein Mutant Wl59 Complexed With Rapamycin
Length = 107
Score = 47.8 bits (112), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 61/116 (52%), Gaps = 11/116 (9%)
Query: 139 GIRYYELKVGGGAT-PRRGDLVVIDLRGEVEGSGQVFVDTFGGNKKPLALVMGSRPYGKG 197
G++ + G G T P+RG V+ G +E G+ F D+ KP ++G + +G
Sbjct: 1 GVQVETISPGDGRTFPKRGQTCVVHYTGMLE-DGKKF-DSSRDRNKPFKFMLGKQEVIRG 58
Query: 198 MCEGIEYVLRSMKVGGKRRVIIPPNLAFGANGADLGDGVQIPPFATLEYIVEVEKV 253
+ EG+ M VG + ++ I P+ A+GA G G+ IPP ATL + VE+ K+
Sbjct: 59 LEEGVA----QMSVGQRAKLTISPDYAYGATGH---PGI-IPPHATLVFDVELLKL 106
>pdb|1U79|A Chain A, Crystal Structure Of Atfkbp13
pdb|1U79|B Chain B, Crystal Structure Of Atfkbp13
pdb|1U79|C Chain C, Crystal Structure Of Atfkbp13
pdb|1U79|D Chain D, Crystal Structure Of Atfkbp13
pdb|1U79|E Chain E, Crystal Structure Of Atfkbp13
pdb|1Y0O|A Chain A, Crystal Structure Of Reduced Atfkbp13
pdb|1Y0O|B Chain B, Crystal Structure Of Reduced Atfkbp13
pdb|1Y0O|C Chain C, Crystal Structure Of Reduced Atfkbp13
pdb|1Y0O|D Chain D, Crystal Structure Of Reduced Atfkbp13
pdb|1Y0O|E Chain E, Crystal Structure Of Reduced Atfkbp13
Length = 129
Score = 47.4 bits (111), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 61/121 (50%), Gaps = 5/121 (4%)
Query: 132 EEVVLPNGIRYYELKVGGGATPRRGDLVVIDLRGEVEGSGQVFVDTFGGNKKPLALVMGS 191
E V P+G+ + + VG G +G L+ G++E +G+VF ++ KPL +G
Sbjct: 6 EFSVSPSGLAFCDKVVGYGPEAVKGQLIKAHYVGKLE-NGKVFDSSYN-RGKPLTFRIGV 63
Query: 192 RPYGKGMCEGI--EYVLRSMKVGGKRRVIIPPNLAFGANGADL-GDGVQIPPFATLEYIV 248
KG +GI + M GGKR + IPP LA+G GA G IPP + L + +
Sbjct: 64 GEVIKGWDQGILGSDGIPPMLTGGKRTLRIPPELAYGDRGAGCKGGSCLIPPASVLLFDI 123
Query: 249 E 249
E
Sbjct: 124 E 124
>pdb|2PPP|A Chain A, Crystal Structure Of E60q Mutant Of Fkbp12
Length = 107
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 60/116 (51%), Gaps = 11/116 (9%)
Query: 139 GIRYYELKVGGGAT-PRRGDLVVIDLRGEVEGSGQVFVDTFGGNKKPLALVMGSRPYGKG 197
G++ + G G T P+RG V+ G +E G+ F D+ KP ++G + +G
Sbjct: 1 GVQVETISPGDGRTFPKRGQTCVVHYTGMLE-DGKKF-DSSRDRNKPFKFMLGKQEVIRG 58
Query: 198 MCEGIEYVLRSMKVGGKRRVIIPPNLAFGANGADLGDGVQIPPFATLEYIVEVEKV 253
EG+ M VG + ++ I P+ A+GA G G+ IPP ATL + VE+ K+
Sbjct: 59 WQEGVA----QMSVGQRAKLTISPDYAYGATGHP---GI-IPPHATLVFDVELLKL 106
>pdb|1BL4|A Chain A, Fkbp Mutant F36v Complexed With Remodeled Synthetic Ligand
pdb|1BL4|B Chain B, Fkbp Mutant F36v Complexed With Remodeled Synthetic Ligand
Length = 107
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 59/116 (50%), Gaps = 11/116 (9%)
Query: 139 GIRYYELKVGGGAT-PRRGDLVVIDLRGEVEGSGQVFVDTFGGNKKPLALVMGSRPYGKG 197
G++ + G G T P+RG V+ G +E +V D+ KP ++G + +G
Sbjct: 1 GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKV--DSSRDRNKPFKFMLGKQEVIRG 58
Query: 198 MCEGIEYVLRSMKVGGKRRVIIPPNLAFGANGADLGDGVQIPPFATLEYIVEVEKV 253
EG+ M VG + ++ I P+ A+GA G G+ IPP ATL + VE+ K+
Sbjct: 59 WEEGVA----QMSVGQRAKLTISPDYAYGATGHP---GI-IPPHATLVFDVELLKL 106
>pdb|1BKF|A Chain A, Fk506 Binding Protein Fkbp Mutant R42kH87V COMPLEX WITH
Immunosuppressant Fk506
Length = 107
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 60/116 (51%), Gaps = 11/116 (9%)
Query: 139 GIRYYELKVGGGAT-PRRGDLVVIDLRGEVEGSGQVFVDTFGGNKKPLALVMGSRPYGKG 197
G++ + G G T P+RG V+ G +E G+ F D+ KP ++G + +G
Sbjct: 1 GVQVETISPGDGRTFPKRGQTCVVHYTGMLE-DGKKF-DSSRDKNKPFKFMLGKQEVIRG 58
Query: 198 MCEGIEYVLRSMKVGGKRRVIIPPNLAFGANGADLGDGVQIPPFATLEYIVEVEKV 253
EG+ M VG + ++ I P+ A+GA G G+ IPP ATL + VE+ K+
Sbjct: 59 WEEGVA----QMSVGQRAKLTISPDYAYGATGVP---GI-IPPHATLVFDVELLKL 106
>pdb|2DG4|A Chain A, Fk506-Binding Protein Mutant Wf59 Complexed With Rapamycin
Length = 107
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 60/116 (51%), Gaps = 11/116 (9%)
Query: 139 GIRYYELKVGGGAT-PRRGDLVVIDLRGEVEGSGQVFVDTFGGNKKPLALVMGSRPYGKG 197
G++ + G G T P+RG V+ G +E G+ F D+ KP ++G + +G
Sbjct: 1 GVQVETISPGDGRTFPKRGQTCVVHYTGMLE-DGKKF-DSSRDRNKPFKFMLGKQEVIRG 58
Query: 198 MCEGIEYVLRSMKVGGKRRVIIPPNLAFGANGADLGDGVQIPPFATLEYIVEVEKV 253
EG+ M VG + ++ I P+ A+GA G G+ IPP ATL + VE+ K+
Sbjct: 59 FEEGVA----QMSVGQRAKLTISPDYAYGATGH---PGI-IPPHATLVFDVELLKL 106
>pdb|3H9R|B Chain B, Crystal Structure Of The Kinase Domain Of Type I Activin
Receptor (Acvr1) In Complex With Fkbp12 And Dorsomorphin
pdb|3MDY|B Chain B, Crystal Structure Of The Cytoplasmic Domain Of The Bone
Morp Protein Receptor Type-1b (Bmpr1b) In Complex With
Fkbp12 An 193189
pdb|3MDY|D Chain D, Crystal Structure Of The Cytoplasmic Domain Of The Bone
Morp Protein Receptor Type-1b (Bmpr1b) In Complex With
Fkbp12 An 193189
Length = 109
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 60/116 (51%), Gaps = 11/116 (9%)
Query: 139 GIRYYELKVGGGAT-PRRGDLVVIDLRGEVEGSGQVFVDTFGGNKKPLALVMGSRPYGKG 197
G++ + G G T P+RG V+ G +E G+ F D+ KP ++G + +G
Sbjct: 3 GVQVETISPGDGRTFPKRGQTCVVHYTGMLE-DGKKF-DSSRDRNKPFKFMLGKQEVIRG 60
Query: 198 MCEGIEYVLRSMKVGGKRRVIIPPNLAFGANGADLGDGVQIPPFATLEYIVEVEKV 253
EG+ M VG + ++ I P+ A+GA G G+ IPP ATL + VE+ K+
Sbjct: 61 WEEGVA----QMSVGQRAKLTISPDYAYGATGHP---GI-IPPHATLVFDVELLKL 108
>pdb|2FAP|A Chain A, The Structure Of The Immunophilin-Immunosuppressant
Fkbp12- (C16)-Ethoxy Rapamycin Complex Interacting With
Huma
pdb|1B6C|A Chain A, Crystal Structure Of The Cytoplasmic Domain Of The Type I
Tgf-Beta Receptor In Complex With Fkbp12
pdb|1B6C|C Chain C, Crystal Structure Of The Cytoplasmic Domain Of The Type I
Tgf-Beta Receptor In Complex With Fkbp12
pdb|1B6C|E Chain E, Crystal Structure Of The Cytoplasmic Domain Of The Type I
Tgf-Beta Receptor In Complex With Fkbp12
pdb|1B6C|G Chain G, Crystal Structure Of The Cytoplasmic Domain Of The Type I
Tgf-Beta Receptor In Complex With Fkbp12
pdb|1QPF|A Chain A, Fk506 Binding Protein (12 Kda, Human) Complex With
L-709,858
pdb|1QPF|D Chain D, Fk506 Binding Protein (12 Kda, Human) Complex With
L-709,858
pdb|1QPL|A Chain A, Fk506 Binding Protein (12 Kda, Human) Complex With
L-707,587
pdb|1QPL|C Chain C, Fk506 Binding Protein (12 Kda, Human) Complex With
L-707,587
pdb|1D6O|A Chain A, Native Fkbp
pdb|1D6O|B Chain B, Native Fkbp
pdb|1D7H|A Chain A, Fkbp Complexed With Dmso
pdb|1D7H|B Chain B, Fkbp Complexed With Dmso
pdb|1D7I|A Chain A, Fkbp Complexed With Methyl Methylsulfinylmethyl Sulfide
(Dss)
pdb|1D7I|B Chain B, Fkbp Complexed With Methyl Methylsulfinylmethyl Sulfide
(Dss)
pdb|1D7J|A Chain A, Fkbp Complexed With 4-Hydroxy-2-Butanone
pdb|1D7J|B Chain B, Fkbp Complexed With 4-Hydroxy-2-Butanone
pdb|3FAP|A Chain A, Atomic Structures Of The Rapamycin Analogs In Complex With
Both Human Fkbp12 And Frb Domain Of Frap
pdb|4FAP|A Chain A, Atomic Structures Of The Rapamycin Analogs In Complex With
Both Human Fkbp12 And Frb Domain Of Frap
pdb|1J4R|A Chain A, Fk506 Binding Protein Complexed With Fkb-001
pdb|1J4R|B Chain B, Fk506 Binding Protein Complexed With Fkb-001
pdb|1J4R|D Chain D, Fk506 Binding Protein Complexed With Fkb-001
pdb|1J4H|A Chain A, Crystal Structure Analysis Of The Fkbp12 Complexed With
000107 Small Molecule
pdb|1J4I|A Chain A, Crystal Structure Analysis Of The Fkbp12 Complexed With
000308 Small Molecule
pdb|2DG3|A Chain A, Wildtype Fk506-Binding Protein Complexed With Rapamycin
pdb|1FKD|A Chain A, Fk-506 Binding Protein: Three-Dimensional Structure Of The
Complex With The Antagonist L-685,818
pdb|1FKF|A Chain A, Atomic Structure Of Fkbp-Fk506, An
Immunophilin-Immunosuppressant Complex
pdb|1FKJ|A Chain A, Atomic Structure Of Fkbp12-Fk506, An Immunophilin
Immunosuppressant Complex
pdb|2FKE|A Chain A, Fk-506-Binding Protein: Three-Dimensional Structure Of The
Complex With The Antagonist L-685,818
pdb|1F40|A Chain A, Solution Structure Of Fkbp12 Complexed With Gpi-1046, A
Neurotrophic Ligand
pdb|1FKR|A Chain A, Solution Structure Of Fkbp, A Rotamase Enzyme And Receptor
For Fk506 And Rapamycin
pdb|1FKS|A Chain A, Solution Structure Of Fkbp, A Rotamase Enzyme And Receptor
For Fk506 And Rapamycin
pdb|1FKT|A Chain A, Solution Structure Of Fkbp, A Rotamase Enzyme And Receptor
For Fk506 And Rapamycin
pdb|2PPN|A Chain A, Crystal Structure Of Fkbp12
pdb|1A7X|A Chain A, Fkbp12-Fk1012 Complex
pdb|1A7X|B Chain B, Fkbp12-Fk1012 Complex
pdb|4DH0|A Chain A, X-Ray Crystal Structure Of 28-O-Methylrapamycin Complexed
With Fkbp12: Is The Cyclohexyl Moiety Part Of The
Effector Domain Of Rapamycin?
pdb|2RSE|A Chain A, Nmr Structure Of Fkbp12-Mtor Frb Domain-Rapamycin Complex
Structure Determined Based On Pcs
pdb|1NSG|A Chain A, The Structure Of The Immunophilin-Immunosuppressant
Fkbp12- Rapamycin Complex Interacting With Human Frap
Length = 107
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 60/116 (51%), Gaps = 11/116 (9%)
Query: 139 GIRYYELKVGGGAT-PRRGDLVVIDLRGEVEGSGQVFVDTFGGNKKPLALVMGSRPYGKG 197
G++ + G G T P+RG V+ G +E G+ F D+ KP ++G + +G
Sbjct: 1 GVQVETISPGDGRTFPKRGQTCVVHYTGMLE-DGKKF-DSSRDRNKPFKFMLGKQEVIRG 58
Query: 198 MCEGIEYVLRSMKVGGKRRVIIPPNLAFGANGADLGDGVQIPPFATLEYIVEVEKV 253
EG+ M VG + ++ I P+ A+GA G G+ IPP ATL + VE+ K+
Sbjct: 59 WEEGVA----QMSVGQRAKLTISPDYAYGATGHP---GI-IPPHATLVFDVELLKL 106
>pdb|1FKB|A Chain A, Atomic Structure Of The Rapamycin Human Immunophilin Fkbp-
12 Complex
pdb|1FKG|A Chain A, Design, Synthesis, And Kinetic Evaluation Of High-Affinity
Fkbp Ligands, And The X-Ray Crystal Structures Of Their
Complexes With Fkbp12
pdb|1FKH|A Chain A, Design, Synthesis, And Kinetic Evaluation Of High-Affinity
Fkbp Ligands, And The X-Ray Crystal Structures Of Their
Complexes With Fkbp12
pdb|1FAP|A Chain A, The Structure Of The Immunophilin-Immunosuppressant
Fkbp12- Rapamycin Complex Interacting With Human Frap
pdb|1FKI|A Chain A, Design, Synthesis, And Kinetic Evaluation Of High-Affinity
Fkbp Ligands, And The X-Ray Crystal Structures Of Their
Complexes With Fkbp12
pdb|1FKI|B Chain B, Design, Synthesis, And Kinetic Evaluation Of High-Affinity
Fkbp Ligands, And The X-Ray Crystal Structures Of Their
Complexes With Fkbp12
Length = 107
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 56/107 (52%), Gaps = 11/107 (10%)
Query: 148 GGGAT-PRRGDLVVIDLRGEVEGSGQVFVDTFGGNKKPLALVMGSRPYGKGMCEGIEYVL 206
G G T P+RG V+ G +E G+ F D+ KP ++G + +G EG+
Sbjct: 10 GDGRTFPKRGQTCVVHYTGMLE-DGKKF-DSSRDRNKPFKFMLGKQEVIRGWEEGVA--- 64
Query: 207 RSMKVGGKRRVIIPPNLAFGANGADLGDGVQIPPFATLEYIVEVEKV 253
M VG + ++ I P+ A+GA G G+ IPP ATL + VE+ K+
Sbjct: 65 -QMSVGQRAKLTISPDYAYGATGHP---GI-IPPHATLVFDVELLKL 106
>pdb|1EYM|A Chain A, Fk506 Binding Protein Mutant, Homodimeric Complex
pdb|1EYM|B Chain B, Fk506 Binding Protein Mutant, Homodimeric Complex
Length = 107
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 59/116 (50%), Gaps = 11/116 (9%)
Query: 139 GIRYYELKVGGGAT-PRRGDLVVIDLRGEVEGSGQVFVDTFGGNKKPLALVMGSRPYGKG 197
G++ + G G T P+RG V+ G +E ++ D+ KP ++G + +G
Sbjct: 1 GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKM--DSSRDRNKPFKFMLGKQEVIRG 58
Query: 198 MCEGIEYVLRSMKVGGKRRVIIPPNLAFGANGADLGDGVQIPPFATLEYIVEVEKV 253
EG+ M VG + ++ I P+ A+GA G G+ IPP ATL + VE+ K+
Sbjct: 59 WEEGVA----QMSVGQRAKLTISPDYAYGATGHP---GI-IPPHATLVFDVELLKL 106
>pdb|1TCO|C Chain C, Ternary Complex Of A Calcineurin A Fragment, Calcineurin
B, Fkbp12 And The Immunosuppressant Drug Fk506
(tacrolimus)
Length = 107
Score = 43.9 bits (102), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 59/116 (50%), Gaps = 11/116 (9%)
Query: 139 GIRYYELKVGGGAT-PRRGDLVVIDLRGEVEGSGQVFVDTFGGNKKPLALVMGSRPYGKG 197
G++ + G G T P+ G V+ G +E G+ F D+ KP ++G + +G
Sbjct: 1 GVQVETISPGDGRTFPKAGQTCVVHYTGMLE-DGKKF-DSSRDRNKPFKFMLGKQEVIRG 58
Query: 198 MCEGIEYVLRSMKVGGKRRVIIPPNLAFGANGADLGDGVQIPPFATLEYIVEVEKV 253
EG+ M VG + ++ I P+ A+GA G G+ IPP ATL + VE+ K+
Sbjct: 59 WEEGVA----QMSVGQRAKLTISPDYAYGATGHP---GI-IPPHATLVFDVELLKL 106
>pdb|1JVW|A Chain A, Trypanosoma Cruzi Macrophage Infectivity Potentiator
(Tcmip)
Length = 167
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 56/119 (47%), Gaps = 11/119 (9%)
Query: 132 EEVVLPNGIRYYELKVGGGATPRRGDLVVIDLRGEVEGSGQVFVDTFGGNKKPLALVMGS 191
+ V LP+G+ + + G G ID + EV +G++ T + +
Sbjct: 31 DAVKLPSGLVFQRIARGSGKR-----APAIDDKCEVHYTGRLRDGTVFDSSRERGKPTTF 85
Query: 192 RPYGKGMCEGIEYVLRSMKVGGKRRVIIPPNLAFGANGADLGDGVQIPPFATLEYIVEV 250
RP + +G L+ M+ G + R+ IP +LA+G G G IPP++ LE+ VE+
Sbjct: 86 RP--NEVIKGWTEALQLMREGDRWRLFIPYDLAYGVTGG----GGMIPPYSPLEFDVEL 138
>pdb|1C9H|A Chain A, Crystal Structure Of Fkbp12.6 In Complex With Rapamycin
Length = 107
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 56/113 (49%), Gaps = 11/113 (9%)
Query: 139 GIRYYELKVGGGAT-PRRGDLVVIDLRGEVEGSGQVFVDTFGGNKKPLALVMGSRPYGKG 197
G+ + G G T P++G V+ G ++ +G+ F D+ KP +G + KG
Sbjct: 1 GVEIETISPGDGRTFPKKGQTCVVHYTGMLQ-NGKKF-DSSRDRNKPFKFRIGKQEVIKG 58
Query: 198 MCEGIEYVLRSMKVGGKRRVIIPPNLAFGANGADLGDGVQIPPFATLEYIVEV 250
EG M +G + ++ P++A+GA G GV IPP ATL + VE+
Sbjct: 59 FEEGAA----QMSLGQRAKLTCTPDVAYGATGH---PGV-IPPNATLIFDVEL 103
>pdb|2UZ5|A Chain A, Solution Structure Of The Fkbp-Domain Of Legionella
Pneumophila Mip
pdb|2VCD|A Chain A, Solution Structure Of The Fkbp-domain Of Legionella
Pneumophila Mip In Complex With Rapamycin
Length = 137
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 44/102 (43%), Gaps = 8/102 (7%)
Query: 125 TRNVEKEEEVVLPNGIRYYELKVGGGATPRRGDLVVIDLRGEVEGSGQVFVDTFGGNKKP 184
T N K VVLP+G++Y + G G P + D V ++ G + G VF D+ KP
Sbjct: 17 TENKNKPGVVVLPSGLQYKVINSGNGVKPGKSDTVTVEYTGRLI-DGTVF-DSTEKTGKP 74
Query: 185 LALVMGSRPYGKGMCEGIEYVLRSMKVGGKRRVIIPPNLAFG 226
+ + G L+ M G + +P LA+G
Sbjct: 75 ATFQVSQ------VIPGWTEALQLMPAGSTWEIYVPSGLAYG 110
>pdb|3OE2|A Chain A, 1.6 A Crystal Structure Of Peptidyl-Prolyl Cis-Trans
Isomerase Ppiase From Pseudomonas Syringae Pv. Tomato
Str. Dc3000 (Pspto Dc3000)
Length = 219
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 53/119 (44%), Gaps = 15/119 (12%)
Query: 136 LPNGIRYYELKVGGGATPRRGDLVVIDLRGEVEGSGQVFVDTFGGNKKPLALVMGSRPYG 195
L +GI EL G G P V + G + G++F + +P + S
Sbjct: 115 LADGILMTELTPGTGPKPDANGRVEVRYVGRLP-DGKIF----DQSTQPQWFRLDS---- 165
Query: 196 KGMCEGIEYVLRSMKVGGKRRVIIPPNLAFGANGADLGDGVQIPPFATLEYIVEVEKVS 254
+ G L++M G K R++IP + A+GA GA G I PF L + +E+ VS
Sbjct: 166 --VISGWTSALQNMPTGAKWRLVIPSDQAYGAEGA----GDLIDPFTPLVFEIELIAVS 218
>pdb|1Q6U|A Chain A, Crystal Structure Of Fkpa From Escherichia Coli
Length = 245
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 63/119 (52%), Gaps = 13/119 (10%)
Query: 139 GIRYYELKVGGGATPRRGDLVVIDLRGEVEGSGQVFVDTFGGNKKPLALVMGSRPYGKGM 198
G+ Y ++ G G P+ D VV++ +G + G+ F +++ +PL+ + G+
Sbjct: 122 GLVYQVVEAGKGEAPKDSDTVVVNYKGTL-IDGKEFDNSYT-RGEPLSFRLD------GV 173
Query: 199 CEGIEYVLRSMKVGGKRRVIIPPNLAFGANGADLGDGVQIPPFATLEYIVEVEKVSIAP 257
G L+++K GGK +++IPP LA+G G IPP +TL + VE+ V AP
Sbjct: 174 IPGWTEGLKNIKKGGKIKLVIPPELAYGKAGV-----PGIPPNSTLVFDVELLDVKPAP 227
>pdb|2PBC|A Chain A, Fk506-Binding Protein 2
pdb|2PBC|B Chain B, Fk506-Binding Protein 2
pdb|2PBC|C Chain C, Fk506-Binding Protein 2
pdb|2PBC|D Chain D, Fk506-Binding Protein 2
Length = 102
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 51/100 (51%), Gaps = 10/100 (10%)
Query: 154 RRGDLVVIDLRGEVEGSGQVFVDTFGGNKKPLALVMGSRPYGKGMCEGIEYVLRSMKVGG 213
R+GD++ + G++E G F + N+ P +G+ KG +G L M G
Sbjct: 7 RKGDVLHMHYTGKLE-DGTEFDSSLPQNQ-PFVFSLGTGQVIKGWDQG----LLGMCEGE 60
Query: 214 KRRVIIPPNLAFGANGADLGDGVQIPPFATLEYIVEVEKV 253
KR+++IP L +G GA +IP ATL + VE+ K+
Sbjct: 61 KRKLVIPSELGYGERGAP----PKIPGGATLVFEVELLKI 96
>pdb|1FD9|A Chain A, Crystal Structure Of The Macrophage Infectivity
Potentiator Protein (Mip) A Major Virulence Factor From
Legionella Pneumophila
Length = 213
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 44/102 (43%), Gaps = 8/102 (7%)
Query: 125 TRNVEKEEEVVLPNGIRYYELKVGGGATPRRGDLVVIDLRGEVEGSGQVFVDTFGGNKKP 184
T N K VVLP+G++Y + G G P + D V ++ G + G VF D+ KP
Sbjct: 93 TENKNKPGVVVLPSGLQYKVINSGNGVKPGKSDTVTVEYTGRLI-DGTVF-DSTEKTGKP 150
Query: 185 LALVMGSRPYGKGMCEGIEYVLRSMKVGGKRRVIIPPNLAFG 226
+ + G L+ M G + +P LA+G
Sbjct: 151 ATFQVSQ------VIPGWTEALQLMPAGSTWEIYVPSGLAYG 186
>pdb|3JXV|A Chain A, Crystal Structure Of The 3 Fkbp Domains Of Wheat Fkbp73
Length = 356
Score = 34.7 bits (78), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 49/98 (50%), Gaps = 7/98 (7%)
Query: 153 PRRGDLVVIDLRGEVEGSGQVFVDTFGGNKKPLALVMGSRPYGKGMCEGIEYVLRSMKVG 212
P G +V + + G+++ G VF+ ++P + + EG++ + +MK G
Sbjct: 260 PNEGAVVTVKITGKLQ-DGTVFLKKGHDEQEPFEFKTDE----EAVIEGLDRAVLNMKKG 314
Query: 213 GKRRVIIPPNLAFGANGADLGDGVQIPPFATLEYIVEV 250
V IPP A+G+ + D + +PP +T+ Y VE+
Sbjct: 315 EVALVTIPPEYAYGSTESKQ-DAI-VPPNSTVIYEVEL 350
Score = 32.7 bits (73), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 45/99 (45%), Gaps = 10/99 (10%)
Query: 152 TPRRGDLVVIDLRGEVEGSGQVFVDTFGGNKKPLALVMGSRPYGKGMCEGIEYVLRSMKV 211
TP GD V + G + G+ F D+ +G KG +GI ++MK
Sbjct: 26 TPEVGDEVEVHYTGTLL-DGKKF-DSSRDRDDTFKFKLGQGQVIKGWDQGI----KTMKK 79
Query: 212 GGKRRVIIPPNLAFGANGADLGDGVQIPPFATLEYIVEV 250
G IPP LA+G +G+ IP ATL++ VE+
Sbjct: 80 GENALFTIPPELAYGESGSP----PTIPANATLQFDVEL 114
Score = 31.6 bits (70), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 198 MCEGIEYVLRSMKVGGKRRVIIPPNLAFGANG-ADLGDGVQIPPFATLEYIVEVEKVS 254
+C + +++MK G K + + P FG G G+G +PP A+L ++++E VS
Sbjct: 178 LCPALAKAVKTMKKGEKVLLAVKPQYGFGEMGRPAAGEGGAVPPNASL--VIDLELVS 233
>pdb|3JYM|A Chain A, Crystal Structure Of The 3 Fkbp Domains Of Wheat Fkbp73
pdb|3JYM|B Chain B, Crystal Structure Of The 3 Fkbp Domains Of Wheat Fkbp73
Length = 377
Score = 34.3 bits (77), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 48/98 (48%), Gaps = 7/98 (7%)
Query: 153 PRRGDLVVIDLRGEVEGSGQVFVDTFGGNKKPLALVMGSRPYGKGMCEGIEYVLRSMKVG 212
P G +V + + G+++ G VF+ ++P + EG++ + +MK G
Sbjct: 276 PNEGAVVTVKITGKLQ-DGTVFLKKGHDEQEPFEFKTDEE----AVIEGLDRAVLNMKKG 330
Query: 213 GKRRVIIPPNLAFGANGADLGDGVQIPPFATLEYIVEV 250
V IPP A+G+ + D + +PP +T+ Y VE+
Sbjct: 331 EVALVTIPPEYAYGSTESKQ-DAI-VPPNSTVIYEVEL 366
Score = 32.7 bits (73), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 45/99 (45%), Gaps = 10/99 (10%)
Query: 152 TPRRGDLVVIDLRGEVEGSGQVFVDTFGGNKKPLALVMGSRPYGKGMCEGIEYVLRSMKV 211
TP GD V + G + G+ F D+ +G KG +GI ++MK
Sbjct: 42 TPEVGDEVEVHYTGTLL-DGKKF-DSSRDRDDTFKFKLGQGQVIKGWDQGI----KTMKK 95
Query: 212 GGKRRVIIPPNLAFGANGADLGDGVQIPPFATLEYIVEV 250
G IPP LA+G +G+ IP ATL++ VE+
Sbjct: 96 GENALFTIPPELAYGESGSP----PTIPANATLQFDVEL 130
Score = 31.6 bits (70), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 198 MCEGIEYVLRSMKVGGKRRVIIPPNLAFGANG-ADLGDGVQIPPFATLEYIVEVEKVS 254
+C + +++MK G K + + P FG G G+G +PP A+L ++++E VS
Sbjct: 194 LCPALAKAVKTMKKGEKVLLAVKPQYGFGEMGRPAAGEGGAVPPNASL--VIDLELVS 249
>pdb|1Q6H|A Chain A, Crystal Structure Of A Truncated Form Of Fkpa From
Escherichia Coli
pdb|1Q6H|B Chain B, Crystal Structure Of A Truncated Form Of Fkpa From
Escherichia Coli
pdb|1Q6I|A Chain A, Crystal Structure Of A Truncated Form Of Fkpa From
Escherichia Coli, In Complex With Immunosuppressant
Fk506
pdb|1Q6I|B Chain B, Crystal Structure Of A Truncated Form Of Fkpa From
Escherichia Coli, In Complex With Immunosuppressant
Fk506
Length = 224
Score = 34.3 bits (77), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 60/112 (53%), Gaps = 13/112 (11%)
Query: 139 GIRYYELKVGGGATPRRGDLVVIDLRGEVEGSGQVFVDTFGGNKKPLALVMGSRPYGKGM 198
G+ Y ++ G G P+ D VV++ +G + G+ F +++ +PL+ + G+
Sbjct: 122 GLVYQVVEAGKGEAPKDSDTVVVNYKGTLI-DGKEFDNSYT-RGEPLSFRL------DGV 173
Query: 199 CEGIEYVLRSMKVGGKRRVIIPPNLAFGANGADLGDGVQIPPFATLEYIVEV 250
G L+++K GGK +++IPP LA+G G IPP +TL + VE+
Sbjct: 174 IPGWTEGLKNIKKGGKIKLVIPPELAYGKAGV-----PGIPPNSTLVFDVEL 220
>pdb|1QZ2|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
pdb|1QZ2|B Chain B, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
pdb|1QZ2|C Chain C, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
Length = 336
Score = 32.7 bits (73), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 53/122 (43%), Gaps = 22/122 (18%)
Query: 140 IRYYELKVGGGATPRRGDLVVIDLRGEVEGSGQVFVDTFGGNKKPLALVMG-----SRPY 194
IR + + G A P G +V + L G + D +++ L +G PY
Sbjct: 28 IRRIQTRGEGYAKPNEGAIVEVALEG-------YYKDKLF-DQRELRFEIGEGENLDLPY 79
Query: 195 GKGMCEGIEYVLRSMKVGGKRRVIIPPNLAFGANGADLGDGVQIPPFATLEYIVEVEKVS 254
G +E ++ M+ G V + P+ AFG+ G + QIPP A L+Y + ++
Sbjct: 80 G------LERAIQRMEKGEHSIVYLKPSYAFGSVGK---EKFQIPPNAELKYELHLKSFE 130
Query: 255 IA 256
A
Sbjct: 131 KA 132
>pdb|1Q1C|A Chain A, Crystal Structure Of N(1-260) Of Human Fkbp52
Length = 280
Score = 31.2 bits (69), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Query: 201 GIEYVLRSMKVGGKRRVIIPPNLAFGANGADLGDGVQIPPFATLEYIVEVEKVSIA 256
G+E ++ M+ G V + P+ AFG+ G + QIPP A L+Y + ++ A
Sbjct: 223 GLERAIQRMEKGEHSIVYLKPSYAFGSVGK---EKFQIPPNAELKYELHLKSFEKA 275
Score = 27.7 bits (60), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 5/57 (8%)
Query: 195 GKG-MCEGIEYVLRSMKVGGKRRVIIPPNLAFGANGADLGDGVQIPPFATLEYIVEV 250
GKG + + + + +MKVG + P A+G+ G+ +IPP ATL + VE+
Sbjct: 102 GKGEVIKAWDIAIATMKVGEVCHITCKPEYAYGSAGSP----PKIPPNATLVFEVEL 154
>pdb|4DT4|A Chain A, Crystal Structure Of The Ppiase-Chaperone Slpa With The
Chaperone Binding Site Occupied By The Linker Of The
Purification Tag
Length = 169
Score = 30.4 bits (67), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
Query: 181 NKKPLALVMGSRPYGKGMCEGIEYVLRSMKVGGKRRVIIPPNLAFGANGADL 232
N KP +G + EG+E L +KVG K + P+ AFG DL
Sbjct: 51 NGKPALFRLGD----ASLSEGLEQHLLGLKVGDKTTFSLEPDAAFGVPSPDL 98
>pdb|1ROT|A Chain A, Structure Of Fkbp59-I, The N-Terminal Domain Of A 59 Kda
Fk506-Binding Protein, Nmr, Minimized Average Structure
pdb|1ROU|A Chain A, Structure Of Fkbp59-I, The N-Terminal Domain Of A 59 Kda
Fk506-Binding Protein, Nmr, 22 Structures
Length = 149
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 5/57 (8%)
Query: 195 GKG-MCEGIEYVLRSMKVGGKRRVIIPPNLAFGANGADLGDGVQIPPFATLEYIVEV 250
GKG + + + + +MKVG R+ P A+G+ G+ +IPP ATL + VE+
Sbjct: 81 GKGEVIKAWDIAVATMKVGELCRITCKPEYAYGSAGS----PPKIPPNATLVFEVEL 133
>pdb|1P5Q|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain
pdb|1P5Q|B Chain B, Crystal Structure Of Fkbp52 C-Terminal Domain
pdb|1P5Q|C Chain C, Crystal Structure Of Fkbp52 C-Terminal Domain
Length = 336
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 52/122 (42%), Gaps = 22/122 (18%)
Query: 140 IRYYELKVGGGATPRRGDLVVIDLRGEVEGSGQVFVDTFGGNKKPLALVMG-----SRPY 194
IR + + G A P G +V + L G + D +++ L +G PY
Sbjct: 28 IRRIQTRGEGYAKPNEGAIVEVALEG-------YYKDKLF-DQRELRFEIGEGENLDLPY 79
Query: 195 GKGMCEGIEYVLRSMKVGGKRRVIIPPNLAFGANGADLGDGVQIPPFATLEYIVEVEKVS 254
G +E ++ + G V + P+ AFG+ G + QIPP A L+Y + ++
Sbjct: 80 G------LERAIQRXEKGEHSIVYLKPSYAFGSVGK---EKFQIPPNAELKYELHLKSFE 130
Query: 255 IA 256
A
Sbjct: 131 KA 132
>pdb|2VN1|A Chain A, Crystal Structure Of The Fk506-Binding Domain Of
Plasmodium Falciparum Fkbp35 In Complex With Fk506
pdb|2VN1|B Chain B, Crystal Structure Of The Fk506-Binding Domain Of
Plasmodium Falciparum Fkbp35 In Complex With Fk506
Length = 129
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 44/99 (44%), Gaps = 11/99 (11%)
Query: 153 PRRGDLVVIDLRGEVEGSGQVFVDTFGGNKK-PLALVMGSRPYGKGMCEGIEYVLRSMKV 211
P++G+ V + G++E +G+VF +F N L G G +C + SM+
Sbjct: 34 PKKGNEVTVHYVGKLESTGKVFDSSFDRNVPFKFHLEQGEVIKGWDIC------VSSMRK 87
Query: 212 GGKRRVIIPPNLAFGANGADLGDGVQIPPFATLEYIVEV 250
K V I +G D G G IP + L + +E+
Sbjct: 88 NEKCLVRIESMYGYG----DEGCGESIPGNSVLLFEIEL 122
>pdb|2OFN|A Chain A, Solution Structure Of Fk506-Binding Domain (Fkbd)of Fkbp35
From Plasmodium Falciparum
Length = 135
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 44/99 (44%), Gaps = 11/99 (11%)
Query: 153 PRRGDLVVIDLRGEVEGSGQVFVDTFGGNKK-PLALVMGSRPYGKGMCEGIEYVLRSMKV 211
P++G+ V + G++E +G+VF +F N L G G +C + SM+
Sbjct: 34 PKKGNEVTVHYVGKLESTGKVFDSSFDRNVPFKFHLEQGEVIKGWDIC------VSSMRK 87
Query: 212 GGKRRVIIPPNLAFGANGADLGDGVQIPPFATLEYIVEV 250
K V I +G D G G IP + L + +E+
Sbjct: 88 NEKCLVRIESMYGYG----DEGCGESIPGNSVLLFEIEL 122
>pdb|2KI3|A Chain A, Structural And Biochemical Characterization Of Fk506
Binding Domain From Plasmodium Vivax
pdb|3IHZ|A Chain A, Crystal Structure Of The Fk506 Binding Domain Of
Plasmodium Vivax Fkbp35 In Complex With Fk506
pdb|3IHZ|B Chain B, Crystal Structure Of The Fk506 Binding Domain Of
Plasmodium Vivax Fkbp35 In Complex With Fk506
pdb|3NI6|A Chain A, Crystal Structure Of The Fk506 Binding Domain Of
Plasmodium Vivax Fkbp35
pdb|3NI6|B Chain B, Crystal Structure Of The Fk506 Binding Domain Of
Plasmodium Vivax Fkbp35
pdb|3PA7|A Chain A, Crystal Structure Of Fkbp From Plasmodium Vivax In Complex
With Tetrapeptide Alpf
pdb|3PA7|B Chain B, Crystal Structure Of Fkbp From Plasmodium Vivax In Complex
With Tetrapeptide Alpf
Length = 126
Score = 28.5 bits (62), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 44/104 (42%), Gaps = 11/104 (10%)
Query: 152 TPRRGDLVVIDLRGEVEGSGQVFVDTFGGNKKPLALVMGSRPYGKGMCEGIEYVLRSMKV 211
P++G+ V + G++E SG+VF D+ P +G KG + + SM
Sbjct: 32 APKKGNEVTVHYVGKLESSGKVF-DSSRERNVPFKFHLGQGEVIKGW----DICVASMTK 86
Query: 212 GGKRRVIIPPNLAFGANGADLGDGVQIPPFATLEYIVEVEKVSI 255
K V + +G G G IP + L I E+E +S
Sbjct: 87 NEKCSVRLDSKYGYGEEGC----GESIPGNSVL--IFEIELISF 124
>pdb|1N1A|A Chain A, Crystal Structure Of The N-Terminal Domain Of Human Fkbp52
pdb|1N1A|B Chain B, Crystal Structure Of The N-Terminal Domain Of Human Fkbp52
Length = 140
Score = 28.5 bits (62), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 5/57 (8%)
Query: 195 GKG-MCEGIEYVLRSMKVGGKRRVIIPPNLAFGANGADLGDGVQIPPFATLEYIVEV 250
GKG + + + + +MKVG + P A+G+ G+ +IPP ATL + VE+
Sbjct: 82 GKGEVIKAWDIAIATMKVGEVCHITCKPEYAYGSAGSP----PKIPPNATLVFEVEL 134
>pdb|4DRJ|A Chain A, O-crystal Structure Of The Ppiase Domain Of Fkbp52,
Rapamycin And The Frb Fragment Of Mtor
Length = 144
Score = 28.1 bits (61), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 5/57 (8%)
Query: 195 GKG-MCEGIEYVLRSMKVGGKRRVIIPPNLAFGANGADLGDGVQIPPFATLEYIVEV 250
GKG + + + + +MKVG + P A+G+ G+ +IPP ATL + VE+
Sbjct: 86 GKGEVIKAWDIAIATMKVGEVCHITCKPEYAYGSAGSP----PKIPPNATLVFEVEL 138
>pdb|3PRB|A Chain A, Structural Analysis Of Protein Folding By The
Methanococcus Jannaschii Chaperone Fkbp26
pdb|3PRB|B Chain B, Structural Analysis Of Protein Folding By The
Methanococcus Jannaschii Chaperone Fkbp26
pdb|3PRD|A Chain A, Structural Analysis Of Protein Folding By The
Methanococcus Jannaschii Chaperone Fkbp26
Length = 231
Score = 27.7 bits (60), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 201 GIEYVLRSMKVGGKRRVIIPPNLAFG 226
G++ + M VG +R V++PP AFG
Sbjct: 56 GLDEAILEMDVGEEREVVLPPEKAFG 81
>pdb|1UXV|A Chain A, Structural Basis For Allosteric Regulation And Substrate
Specificity Of The Non-Phosphorylating
Glyceraldehyde-3-Phosphate Dehydrogenase (Gapn) From
Thermoproteus Tenax
Length = 501
Score = 27.7 bits (60), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 6/93 (6%)
Query: 125 TRNVEKEEEVVLPNGIRYYELKVGGGATPRRGDLVVIDLRGEVEGSGQVFVDTFGGNK-K 183
T + E E VV G++ Y +++GGG + +DL + G + ++ G +
Sbjct: 242 TGSTEVGERVVKVGGVKQYVMELGGGDPAIVLEDADLDLAADKIARG---IYSYAGQRCD 298
Query: 184 PLALVMGSRP-YGKGMCEGIEYVLRSMKVGGKR 215
+ LV+ RP YGK + E + L S++VG R
Sbjct: 299 AIKLVLAERPVYGK-LVEEVAKRLSSLRVGDPR 330
>pdb|3B7X|A Chain A, Crystal Structure Of Human Fk506-Binding Protein 6
Length = 134
Score = 27.7 bits (60), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Query: 201 GIEYVLRSMKVGGKRRVIIPPNLAFGANGADLGDGVQIPPFATLEYIVEV 250
G+E L SM+ G R + PN A+G LG IPP T+ + +E+
Sbjct: 84 GMELGLLSMRRGELARFLFKPNYAYGT----LGCPPLIPPNTTVLFEIEL 129
>pdb|1UXN|A Chain A, Structural Basis For Allosteric Regulation And Substrate
Specificity Of The Non-Phosphorylating
Glyceraldehyde-3-Phosphate Dehydrogenase (Gapn) From
Thermoproteus Tenax
pdb|1UXP|A Chain A, Structural Basis For Allosteric Regulation And Substrate
Specificity Of The Non-Phosphorylating
Glyceraldehyde-3-Phosphate Dehydrogenase (Gapn) From
Thermoproteus Tenax
pdb|1UXQ|A Chain A, Structural Basis For Allosteric Regulation And Substrate
Specificity Of The Non-Phosphorylating
Glyceraldehyde-3-Phosphate Dehydrogenase (Gapn) From
Thermoproteus Tenax
pdb|1UXR|A Chain A, Structural Basis For Allosteric Regulation And Substrate
Specificity Of The Non-Phosphorylating
Glyceraldehyde-3-Phosphate Dehydrogenase (Gapn) From
Thermoproteus Tenax
pdb|1UXT|A Chain A, Structural Basis For Allosteric Regulation And Substrate
Specificity Of The Non-phosphorylating
Glyceraldehyde-3-phosphate Dehydrogenase (gapn) From
Thermoproteus Tenax
pdb|1UXU|A Chain A, Structural Basis For Allosteric Regulation And Substrate
Specificity Of The Non-Phosphorylating
Glyceraldehyde-3-Phosphate Dehydrogenase (Gapn) From
Thermoproteus Tenax
Length = 501
Score = 27.7 bits (60), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 6/93 (6%)
Query: 125 TRNVEKEEEVVLPNGIRYYELKVGGGATPRRGDLVVIDLRGEVEGSGQVFVDTFGGNK-K 183
T + E E VV G++ Y +++GGG + +DL + G + ++ G +
Sbjct: 242 TGSTEVGERVVKVGGVKQYVMELGGGDPAIVLEDADLDLAADKIARG---IYSYAGQRCD 298
Query: 184 PLALVMGSRP-YGKGMCEGIEYVLRSMKVGGKR 215
+ LV+ RP YGK + E + L S++VG R
Sbjct: 299 AIKLVLAERPVYGK-LVEEVAKRLSSLRVGDPR 330
>pdb|1KY8|A Chain A, Crystal Structure Of The Non-Phosphorylating
Glyceraldehyde-3- Phosphate Dehydrogenase
Length = 501
Score = 27.7 bits (60), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 6/93 (6%)
Query: 125 TRNVEKEEEVVLPNGIRYYELKVGGGATPRRGDLVVIDLRGEVEGSGQVFVDTFGGNK-K 183
T + E E VV G++ Y +++GGG + +DL + G + ++ G +
Sbjct: 242 TGSTEVGERVVKVGGVKQYVMELGGGDPAIVLEDADLDLAADKIARG---IYSYAGQRCD 298
Query: 184 PLALVMGSRP-YGKGMCEGIEYVLRSMKVGGKR 215
+ LV+ RP YGK + E + L S++VG R
Sbjct: 299 AIKLVLAERPVYGK-LVEEVAKRLSSLRVGDPR 330
>pdb|3PR9|A Chain A, Structural Analysis Of Protein Folding By The
Methanococcus Jannaschii Chaperone Fkbp26
pdb|3PRA|A Chain A, Structural Analysis Of Protein Folding By The
Methanococcus Jannaschii Chaperone Fkbp26
pdb|3PRA|B Chain B, Structural Analysis Of Protein Folding By The
Methanococcus Jannaschii Chaperone Fkbp26
Length = 157
Score = 27.3 bits (59), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 201 GIEYVLRSMKVGGKRRVIIPPNLAFG 226
G++ + M VG +R V++PP AFG
Sbjct: 56 GLDEAILEMDVGEEREVVLPPEKAFG 81
>pdb|1IX5|A Chain A, Solution Structure Of The Methanococcus
Thermolithotrophicus Fkbp
Length = 151
Score = 27.3 bits (59), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 9/80 (11%)
Query: 155 RGDLVVIDLRGEVEGSGQVFVDTFGGNKKPLALVMGSRPY-------GKG-MCEGIEYVL 206
+G + +D G++E SG VF + K + R Y G+G + +G E +
Sbjct: 4 KGVKIKVDYIGKLE-SGDVFDTSIEEVAKEAGIYAPDREYEPLEFVVGEGQLIQGFEEAV 62
Query: 207 RSMKVGGKRRVIIPPNLAFG 226
M+VG ++ V IP A+G
Sbjct: 63 LDMEVGDEKTVKIPAEKAYG 82
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.137 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,690,921
Number of Sequences: 62578
Number of extensions: 224985
Number of successful extensions: 486
Number of sequences better than 100.0: 49
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 440
Number of HSP's gapped (non-prelim): 54
length of query: 258
length of database: 14,973,337
effective HSP length: 97
effective length of query: 161
effective length of database: 8,903,271
effective search space: 1433426631
effective search space used: 1433426631
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)