Query 042997
Match_columns 258
No_of_seqs 268 out of 1442
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 11:44:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042997.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042997hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0545 FkpA FKBP-type peptidy 100.0 7.5E-33 1.6E-37 238.8 15.0 117 126-254 89-205 (205)
2 PRK11570 peptidyl-prolyl cis-t 100.0 6E-31 1.3E-35 230.3 16.2 176 65-254 7-206 (206)
3 PRK10902 FKBP-type peptidyl-pr 100.0 4.1E-30 8.8E-35 233.0 17.6 180 65-257 42-252 (269)
4 KOG0552 FKBP-type peptidyl-pro 100.0 2.5E-29 5.5E-34 221.0 13.5 166 78-254 54-226 (226)
5 KOG0544 FKBP-type peptidyl-pro 100.0 1E-27 2.2E-32 183.2 11.7 106 139-254 2-108 (108)
6 TIGR03516 ppisom_GldI peptidyl 99.9 1E-25 2.2E-30 193.1 16.1 115 130-255 61-177 (177)
7 KOG0549 FKBP-type peptidyl-pro 99.9 6E-26 1.3E-30 192.6 13.8 112 136-257 66-179 (188)
8 PF00254 FKBP_C: FKBP-type pep 99.8 1.2E-20 2.7E-25 144.1 11.7 91 152-251 4-94 (94)
9 KOG0543 FKBP-type peptidyl-pro 99.7 9.5E-16 2.1E-20 144.2 13.1 106 137-254 83-190 (397)
10 PRK15095 FKBP-type peptidyl-pr 99.5 3.3E-14 7.2E-19 119.6 8.0 71 152-228 4-74 (156)
11 COG1047 SlpA FKBP-type peptidy 99.3 8.8E-12 1.9E-16 106.2 8.1 71 152-228 2-72 (174)
12 PRK10737 FKBP-type peptidyl-pr 99.2 1.8E-11 4E-16 106.5 7.8 70 152-228 2-71 (196)
13 KOG0543 FKBP-type peptidyl-pro 99.0 4.5E-10 9.8E-15 106.1 6.8 82 146-252 1-83 (397)
14 TIGR00115 tig trigger factor. 98.9 1.7E-08 3.8E-13 96.3 10.9 86 152-255 146-231 (408)
15 PRK01490 tig trigger factor; P 98.7 6.5E-08 1.4E-12 93.2 11.0 86 152-255 157-242 (435)
16 COG0544 Tig FKBP-type peptidyl 98.4 1.1E-06 2.4E-11 85.3 9.4 86 153-256 158-243 (441)
17 KOG0545 Aryl-hydrocarbon recep 97.6 1.6E-05 3.5E-10 71.8 0.9 81 135-220 7-90 (329)
18 PF01346 FKBP_N: Domain amino 97.5 0.00016 3.5E-09 57.8 4.4 79 64-144 18-124 (124)
19 KOG0549 FKBP-type peptidyl-pro 97.3 0.00023 5E-09 61.3 3.8 39 188-230 2-40 (188)
20 COG5178 PRP8 U5 snRNP spliceos 42.9 22 0.00047 39.2 3.1 8 39-46 20-27 (2365)
21 PRK05753 nucleoside diphosphat 34.3 1.8E+02 0.0038 23.8 6.7 23 198-220 91-113 (137)
22 KOG1830 Wiskott Aldrich syndro 33.4 1.8E+02 0.004 28.7 7.5 12 63-74 439-450 (518)
23 KOG2391 Vacuolar sorting prote 30.5 4.9E+02 0.011 25.0 9.9 12 2-13 133-144 (365)
24 PF09122 DUF1930: Domain of un 28.2 58 0.0013 23.6 2.4 23 199-221 34-56 (68)
25 PHA02122 hypothetical protein 26.0 1.2E+02 0.0025 21.5 3.5 19 155-175 40-58 (65)
26 COG2258 Uncharacterized protei 25.2 52 0.0011 29.2 2.1 29 135-166 136-164 (210)
27 PRK11536 6-N-hydroxylaminopuri 24.2 59 0.0013 29.1 2.3 27 135-164 139-165 (223)
28 PRK15095 FKBP-type peptidyl-pr 23.5 80 0.0017 26.4 2.9 17 240-256 130-146 (156)
29 PF07172 GRP: Glycine rich pro 23.0 60 0.0013 25.1 1.9 13 92-104 6-18 (95)
30 KOG2675 Adenylate cyclase-asso 22.3 92 0.002 30.8 3.3 15 135-149 328-342 (480)
31 PRK10737 FKBP-type peptidyl-pr 20.7 95 0.0021 27.2 2.9 17 240-256 126-142 (196)
No 1
>COG0545 FkpA FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.5e-33 Score=238.77 Aligned_cols=117 Identities=38% Similarity=0.721 Sum_probs=109.9
Q ss_pred hccccCCeEEcCCceEEEEEEecCCCCCCCCCEEEEEEEEEEecCCeEEEeccCCCCcceEEEcCCccCCCcccccHHHH
Q 042997 126 RNVEKEEEVVLPNGIRYYELKVGGGATPRRGDLVVIDLRGEVEGSGQVFVDTFGGNKKPLALVMGSRPYGKGMCEGIEYV 205 (258)
Q Consensus 126 ~~~~~~~~~~t~sGl~y~ilk~G~G~~p~~GD~V~v~Y~~~~~d~G~vfdsS~~~~~~p~~f~lG~g~~~~~~i~Gleea 205 (258)
++.++..++++++||+|++++.|+|..+..+|.|++||++++.| |++||+||.++ +|+.|.+| ++|+||.+|
T Consensus 89 ~~~k~~~v~~~~sgl~y~~~~~G~G~~~~~~~~V~vhY~G~l~~-G~vFDsS~~rg-~p~~f~l~------~vI~Gw~eg 160 (205)
T COG0545 89 KNAKEKGVKTLPSGLQYKVLKAGDGAAPKKGDTVTVHYTGTLID-GTVFDSSYDRG-QPAEFPLG------GVIPGWDEG 160 (205)
T ss_pred hhcccCCceECCCCcEEEEEeccCCCCCCCCCEEEEEEEEecCC-CCccccccccC-CCceeecC------CeeehHHHH
Confidence 55567788999999999999999999999999999999999998 99999999986 99999996 599999999
Q ss_pred hcCCccCcEEEEEeCCCCCCCCCCCCCCCCCCCCCCCeEEEEEEEEEEE
Q 042997 206 LRSMKVGGKRRVIIPPNLAFGANGADLGDGVQIPPFATLEYIVEVEKVS 254 (258)
Q Consensus 206 L~~Mk~Gek~~v~IPp~laYG~~g~~~~~~~~IPpnstLvf~VeL~~V~ 254 (258)
|.+|++|++|+++||++||||.+|. ++.||||++|+|+|||++|+
T Consensus 161 l~~M~vG~k~~l~IP~~laYG~~g~----~g~Ippns~LvFeVeLl~v~ 205 (205)
T COG0545 161 LQGMKVGGKRKLTIPPELAYGERGV----PGVIPPNSTLVFEVELLDVK 205 (205)
T ss_pred HhhCCCCceEEEEeCchhccCcCCC----CCCCCCCCeEEEEEEEEecC
Confidence 9999999999999999999999998 56699999999999999984
No 2
>PRK11570 peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.97 E-value=6e-31 Score=230.26 Aligned_cols=176 Identities=27% Similarity=0.395 Sum_probs=137.4
Q ss_pred hhhhhhccccccccchHHHHHHHhHhhhhhhhHHHHHHHh------cccchHHHHHHHHHHHH-----------------
Q 042997 65 KVQQQKRAKPATVESTDWIASSLTRRFGLGAGLAWAGFLA------VGVISEQIKTRLEVSQQ----------------- 121 (258)
Q Consensus 65 ~~~~~k~~~~~g~~~~~~i~~~l~rR~~lg~~l~~~~~La------~~~~~~~~~~~le~~~~----------------- 121 (258)
+...||-+|++|+++++.+....-. .+-....+.++.. .....++++..+..+++
T Consensus 7 ~~~~~~~sY~~G~~~g~~l~~~~~~--~~d~~~~~~G~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (206)
T PRK11570 7 DSIEAQASYGIGLQVGQQLSESGLE--GLLPEALVAGLADALEGKHPAVPVDVVHRALREIHERADAVRRERQQAMAAEG 84 (206)
T ss_pred CCHHHHHHHHHHHHHHHHHHhcCCc--cCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457889999999999888654211 0111111222221 12334444443332222
Q ss_pred -HHhhhccccCCeEEcCCceEEEEEEecCCCCCCCCCEEEEEEEEEEecCCeEEEeccCCCCcceEEEcCCccCCCcccc
Q 042997 122 -EASTRNVEKEEEVVLPNGIRYYELKVGGGATPRRGDLVVIDLRGEVEGSGQVFVDTFGGNKKPLALVMGSRPYGKGMCE 200 (258)
Q Consensus 122 -~~~~~~~~~~~~~~t~sGl~y~ilk~G~G~~p~~GD~V~v~Y~~~~~d~G~vfdsS~~~~~~p~~f~lG~g~~~~~~i~ 200 (258)
+..++|.++++++++++||+|+++++|+|..+..||.|.|||++++.| |++||+||.++ .|+.|.+| .+++
T Consensus 85 ~~fl~~~~k~~gv~~t~sGl~y~vi~~G~G~~p~~~d~V~v~Y~g~l~d-G~vfdss~~~g-~P~~f~l~------~vip 156 (206)
T PRK11570 85 VKFLEENAKKEGVNSTESGLQFRVLTQGEGAIPARTDRVRVHYTGKLID-GTVFDSSVARG-EPAEFPVN------GVIP 156 (206)
T ss_pred HHHHHHhhhcCCcEECCCCcEEEEEeCCCCCCCCCCCEEEEEEEEEECC-CCEEEeccCCC-CCeEEEee------chhh
Confidence 122356678899999999999999999999999999999999999987 99999999864 89999995 4899
Q ss_pred cHHHHhcCCccCcEEEEEeCCCCCCCCCCCCCCCCCCCCCCCeEEEEEEEEEEE
Q 042997 201 GIEYVLRSMKVGGKRRVIIPPNLAFGANGADLGDGVQIPPFATLEYIVEVEKVS 254 (258)
Q Consensus 201 GleeaL~~Mk~Gek~~v~IPp~laYG~~g~~~~~~~~IPpnstLvf~VeL~~V~ 254 (258)
||+++|.+|++|++++|+||+++|||+.|. ++.||||++|+|+|||++|+
T Consensus 157 G~~eaL~~M~~G~k~~~~IP~~lAYG~~g~----~~~Ipp~s~Lif~veLl~i~ 206 (206)
T PRK11570 157 GWIEALTLMPVGSKWELTIPHELAYGERGA----GASIPPFSTLVFEVELLEIL 206 (206)
T ss_pred HHHHHHcCCCCCCEEEEEECHHHcCCCCCC----CCCcCCCCeEEEEEEEEEEC
Confidence 999999999999999999999999999998 67899999999999999984
No 3
>PRK10902 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.97 E-value=4.1e-30 Score=232.99 Aligned_cols=180 Identities=27% Similarity=0.445 Sum_probs=147.5
Q ss_pred hhhhhhccccccccchHHHHHHHhHhhhhhhhHHHHHHHh---------cccchHHHHHHHHHHHH--------------
Q 042997 65 KVQQQKRAKPATVESTDWIASSLTRRFGLGAGLAWAGFLA---------VGVISEQIKTRLEVSQQ-------------- 121 (258)
Q Consensus 65 ~~~~~k~~~~~g~~~~~~i~~~l~rR~~lg~~l~~~~~La---------~~~~~~~~~~~le~~~~-------------- 121 (258)
+.+.+|-+|++|+++++.|.+.+.++..++..++...++. .....+++++.+..+++
T Consensus 42 ~~~~~k~sY~~G~~~g~~~~~~~~~~~~~~~~~d~~~~~~G~~d~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 121 (269)
T PRK10902 42 KNDDQQSAYALGASLGRYMENSLKEQEKLGIKLDKDQLIAGVQDAFADKSKLSDQEIEQTLQAFEARVKSAAQAKMEKDA 121 (269)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHhhhcccCcCcCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567889999999999999998888765555555544433 12345555544433221
Q ss_pred --------HHhhhccccCCeEEcCCceEEEEEEecCCCCCCCCCEEEEEEEEEEecCCeEEEeccCCCCcceEEEcCCcc
Q 042997 122 --------EASTRNVEKEEEVVLPNGIRYYELKVGGGATPRRGDLVVIDLRGEVEGSGQVFVDTFGGNKKPLALVMGSRP 193 (258)
Q Consensus 122 --------~~~~~~~~~~~~~~t~sGl~y~ilk~G~G~~p~~GD~V~v~Y~~~~~d~G~vfdsS~~~~~~p~~f~lG~g~ 193 (258)
....++.++++++++++||+|+++++|+|..+..||.|.|||++++.| |++|++++.++ .|+.|.++
T Consensus 122 ~~~~~~~~~fl~~~~k~~gv~~t~sGl~y~Vi~~G~G~~p~~gD~V~V~Y~g~l~d-G~vfdss~~~g-~p~~f~l~--- 196 (269)
T PRK10902 122 ADNEAKGKKYREKFAKEKGVKTTSTGLLYKVEKEGTGEAPKDSDTVVVNYKGTLID-GKEFDNSYTRG-EPLSFRLD--- 196 (269)
T ss_pred HHHHHHHHHHHHHhccCCCcEECCCccEEEEEeCCCCCCCCCCCEEEEEEEEEeCC-CCEeeccccCC-CceEEecC---
Confidence 122366678899999999999999999999999999999999999987 99999999764 89999984
Q ss_pred CCCcccccHHHHhcCCccCcEEEEEeCCCCCCCCCCCCCCCCCCCCCCCeEEEEEEEEEEEeCC
Q 042997 194 YGKGMCEGIEYVLRSMKVGGKRRVIIPPNLAFGANGADLGDGVQIPPFATLEYIVEVEKVSIAP 257 (258)
Q Consensus 194 ~~~~~i~GleeaL~~Mk~Gek~~v~IPp~laYG~~g~~~~~~~~IPpnstLvf~VeL~~V~~~P 257 (258)
.+++||+++|.+|++|++++|+||++++||++|. + .||+|++|+|+|+|++|+..+
T Consensus 197 ---~vipG~~EaL~~Mk~Gek~~l~IP~~laYG~~g~----~-gIppns~LvfeVeLl~V~~~~ 252 (269)
T PRK10902 197 ---GVIPGWTEGLKNIKKGGKIKLVIPPELAYGKAGV----P-GIPANSTLVFDVELLDVKPAP 252 (269)
T ss_pred ---CcchHHHHHHhcCCCCcEEEEEECchhhCCCCCC----C-CCCCCCcEEEEEEEEEeccCc
Confidence 5899999999999999999999999999999987 3 699999999999999998654
No 4
>KOG0552 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=2.5e-29 Score=221.04 Aligned_cols=166 Identities=40% Similarity=0.695 Sum_probs=135.8
Q ss_pred cchHHHHHHHhHhhhhhhhHHHHHHHhcccchHHHHHHHHH-HHHHHh---hhccccCCe--EEcCCceEEEEEEecCCC
Q 042997 78 ESTDWIASSLTRRFGLGAGLAWAGFLAVGVISEQIKTRLEV-SQQEAS---TRNVEKEEE--VVLPNGIRYYELKVGGGA 151 (258)
Q Consensus 78 ~~~~~i~~~l~rR~~lg~~l~~~~~La~~~~~~~~~~~le~-~~~~~~---~~~~~~~~~--~~t~sGl~y~ilk~G~G~ 151 (258)
....|+....++|+..+-..+|..++..++..+..++.-+. ..+... .++.++... .++.+||+|++++.|+|+
T Consensus 54 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~s~ek~~~~~~~~~~~~~~~~~~~~~ek~~~~~~tl~~Gl~y~D~~vG~G~ 133 (226)
T KOG0552|consen 54 QETVEISSSKKRRKSSSKRKAWEGFLSAAASAEKKKTSPEGVSPEKEKQKISKEVEKQKPKSRTLPGGLRYEDLRVGSGP 133 (226)
T ss_pred ccchhcccccccccccccccccccccccccchhhhhccccccChhhccccccccccccCccceecCCCcEEEEEEecCCC
Confidence 46778888999999888777777677766666555432222 111111 222333333 688999999999999999
Q ss_pred CCCCCCEEEEEEEEEEecCCeEEEeccCCCCcceE-EEcCCccCCCcccccHHHHhcCCccCcEEEEEeCCCCCCCCCCC
Q 042997 152 TPRRGDLVVIDLRGEVEGSGQVFVDTFGGNKKPLA-LVMGSRPYGKGMCEGIEYVLRSMKVGGKRRVIIPPNLAFGANGA 230 (258)
Q Consensus 152 ~p~~GD~V~v~Y~~~~~d~G~vfdsS~~~~~~p~~-f~lG~g~~~~~~i~GleeaL~~Mk~Gek~~v~IPp~laYG~~g~ 230 (258)
.+..|+.|.+||.+++..+|++||+++.. +|+. |.+|.| .+|+||+.+|.+|++|++|+|+|||+||||.+|.
T Consensus 134 ~a~~G~rV~v~Y~Gkl~~~GkvFd~~~~~--kp~~~f~lg~g----~VIkG~d~gv~GMkvGGkRrviIPp~lgYg~~g~ 207 (226)
T KOG0552|consen 134 SAKKGKRVSVRYIGKLKGNGKVFDSNFGG--KPFKLFRLGSG----EVIKGWDVGVEGMKVGGKRRVIIPPELGYGKKGV 207 (226)
T ss_pred CCCCCCEEEEEEEEEecCCCeEeecccCC--CCccccccCCC----CCCchHHHhhhhhccCCeeEEEeCccccccccCc
Confidence 99999999999999999569999999874 6888 999996 7999999999999999999999999999999998
Q ss_pred CCCCCCCCCCCCeEEEEEEEEEEE
Q 042997 231 DLGDGVQIPPFATLEYIVEVEKVS 254 (258)
Q Consensus 231 ~~~~~~~IPpnstLvf~VeL~~V~ 254 (258)
..||||++|+|+|||+.|+
T Consensus 208 -----~~IppnstL~fdVEL~~v~ 226 (226)
T KOG0552|consen 208 -----PEIPPNSTLVFDVELLSVK 226 (226)
T ss_pred -----CcCCCCCcEEEEEEEEecC
Confidence 4899999999999999874
No 5
>KOG0544 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1e-27 Score=183.15 Aligned_cols=106 Identities=30% Similarity=0.543 Sum_probs=100.3
Q ss_pred ceEEEEEEecCCC-CCCCCCEEEEEEEEEEecCCeEEEeccCCCCcceEEEcCCccCCCcccccHHHHhcCCccCcEEEE
Q 042997 139 GIRYYELKVGGGA-TPRRGDLVVIDLRGEVEGSGQVFVDTFGGNKKPLALVMGSRPYGKGMCEGIEYVLRSMKVGGKRRV 217 (258)
Q Consensus 139 Gl~y~ilk~G~G~-~p~~GD~V~v~Y~~~~~d~G~vfdsS~~~~~~p~~f~lG~g~~~~~~i~GleeaL~~Mk~Gek~~v 217 (258)
|+..++++.|+|. .++.||+|++||++.+.| |+.||||.+++ +||.|.+|.| .+|.||++++..|.+|+++++
T Consensus 2 Gv~~~~i~~Gdg~tfpK~Gqtvt~hYtg~L~d-G~kfDSs~dr~-kPfkf~IGkg----eVIkGwdegv~qmsvGekakL 75 (108)
T KOG0544|consen 2 GVEKQVISPGDGRTFPKKGQTVTVHYTGTLQD-GKKFDSSRDRG-KPFKFKIGKG----EVIKGWDEGVAQMSVGEKAKL 75 (108)
T ss_pred CceeEEeeCCCCcccCCCCCEEEEEEEeEecC-CcEeecccccC-CCeeEEecCc----ceeechhhcchhcccccccee
Confidence 7889999999995 599999999999999998 99999999886 9999999997 689999999999999999999
Q ss_pred EeCCCCCCCCCCCCCCCCCCCCCCCeEEEEEEEEEEE
Q 042997 218 IIPPNLAFGANGADLGDGVQIPPFATLEYIVEVEKVS 254 (258)
Q Consensus 218 ~IPp~laYG~~g~~~~~~~~IPpnstLvf~VeL~~V~ 254 (258)
.|.|++|||..|. +..||||++|+|+|||++|.
T Consensus 76 ti~pd~aYG~~G~----p~~IppNatL~FdVEll~v~ 108 (108)
T KOG0544|consen 76 TISPDYAYGPRGH----PGGIPPNATLVFDVELLKVN 108 (108)
T ss_pred eeccccccCCCCC----CCccCCCcEEEEEEEEEecC
Confidence 9999999999998 78999999999999999873
No 6
>TIGR03516 ppisom_GldI peptidyl-prolyl isomerase, gliding motility-associated. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldI is a FKBP-type peptidyl-prolyl cis-trans isomerase (pfam00254) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockout of this gene abolishes the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. This family is only found in Bacteroidetes containing the suite of genes proposed to confer the gliding motility phenotype.
Probab=99.94 E-value=1e-25 Score=193.07 Aligned_cols=115 Identities=23% Similarity=0.318 Sum_probs=105.0
Q ss_pred cCCeEEcCCceEEEEEEe--cCCCCCCCCCEEEEEEEEEEecCCeEEEeccCCCCcceEEEcCCccCCCcccccHHHHhc
Q 042997 130 KEEEVVLPNGIRYYELKV--GGGATPRRGDLVVIDLRGEVEGSGQVFVDTFGGNKKPLALVMGSRPYGKGMCEGIEYVLR 207 (258)
Q Consensus 130 ~~~~~~t~sGl~y~ilk~--G~G~~p~~GD~V~v~Y~~~~~d~G~vfdsS~~~~~~p~~f~lG~g~~~~~~i~GleeaL~ 207 (258)
...+.++++|++|+++++ |+|..++.||.|++||++++.| |++|++++.. .|+.|.+|.+ .+++||+++|.
T Consensus 61 ~~~~~~t~sGl~Y~v~~~~~g~g~~p~~gd~V~v~Y~~~~~d-G~v~~ss~~~--~P~~f~vg~~----~vi~Gl~e~L~ 133 (177)
T TIGR03516 61 IVKYETSQNGFWYYYNQKDTGEGTTPEFGDLVTFEYDIRALD-GDVIYSEEEL--GPQTYKVDQQ----DLFSGLRDGLK 133 (177)
T ss_pred CCCceECCCccEEEEEEecCCCCCcCCCCCEEEEEEEEEeCC-CCEEEeCCCC--CCEEEEeCCc----chhHHHHHHHc
Confidence 356689999999999976 6677899999999999999998 9999999864 5999999985 68999999999
Q ss_pred CCccCcEEEEEeCCCCCCCCCCCCCCCCCCCCCCCeEEEEEEEEEEEe
Q 042997 208 SMKVGGKRRVIIPPNLAFGANGADLGDGVQIPPFATLEYIVEVEKVSI 255 (258)
Q Consensus 208 ~Mk~Gek~~v~IPp~laYG~~g~~~~~~~~IPpnstLvf~VeL~~V~~ 255 (258)
+|++||+++|+||+++|||..|. ...||+|++|+|+|||++|++
T Consensus 134 ~Mk~Ge~~~~~iP~~~AYG~~g~----~~~Ippns~L~f~IeL~~i~~ 177 (177)
T TIGR03516 134 LMKEGETATFLFPSHKAYGYYGD----QNKIGPNLPIISTVTLLNIKP 177 (177)
T ss_pred CCCCCCEEEEEECHHHcCCCCCC----CCCcCcCCcEEEEEEEEEecC
Confidence 99999999999999999999987 678999999999999999963
No 7
>KOG0549 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=6e-26 Score=192.56 Aligned_cols=112 Identities=29% Similarity=0.506 Sum_probs=98.9
Q ss_pred cCCceEEEEEEec--CCCCCCCCCEEEEEEEEEEecCCeEEEeccCCCCcceEEEcCCccCCCcccccHHHHhcCCccCc
Q 042997 136 LPNGIRYYELKVG--GGATPRRGDLVVIDLRGEVEGSGQVFVDTFGGNKKPLALVMGSRPYGKGMCEGIEYVLRSMKVGG 213 (258)
Q Consensus 136 t~sGl~y~ilk~G--~G~~p~~GD~V~v~Y~~~~~d~G~vfdsS~~~~~~p~~f~lG~g~~~~~~i~GleeaL~~Mk~Ge 213 (258)
..+++...+++.= -..+.+.||.|.+||++.+.| |++|||||.++ +|++|.||.| ++|+||+.+|.+|++||
T Consensus 66 ~~~~l~I~v~~~p~~C~~kak~GD~l~~HY~g~leD-Gt~fdSS~~rg-~P~~f~LG~g----qVIkG~Dqgl~gMCvGE 139 (188)
T KOG0549|consen 66 PDEELQIGVLKKPEECPEKAKKGDTLHVHYTGSLED-GTKFDSSYSRG-APFTFTLGTG----QVIKGWDQGLLGMCVGE 139 (188)
T ss_pred CCCceeEEEEECCccccccccCCCEEEEEEEEEecC-CCEEeeeccCC-CCEEEEeCCC----ceeccHhHHhhhhCccc
Confidence 3455555555542 356789999999999999988 99999999986 8999999997 58999999999999999
Q ss_pred EEEEEeCCCCCCCCCCCCCCCCCCCCCCCeEEEEEEEEEEEeCC
Q 042997 214 KRRVIIPPNLAFGANGADLGDGVQIPPFATLEYIVEVEKVSIAP 257 (258)
Q Consensus 214 k~~v~IPp~laYG~~g~~~~~~~~IPpnstLvf~VeL~~V~~~P 257 (258)
||+++|||+||||++|. ++.||++++|+|||||+++...|
T Consensus 140 kRkl~IPp~LgYG~~G~----~~~IP~~A~LiFdiELv~i~~~~ 179 (188)
T KOG0549|consen 140 KRKLIIPPHLGYGERGA----PPKIPGDAVLIFDIELVKIERGP 179 (188)
T ss_pred ceEEecCccccCccCCC----CCCCCCCeeEEEEEEEEEeecCC
Confidence 99999999999999999 67799999999999999998764
No 8
>PF00254 FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomerase; InterPro: IPR001179 Synonym(s): Peptidylprolyl cis-trans isomerase FKBP-type peptidylprolyl isomerases (5.2.1.8 from EC) in vertebrates, are receptors for the two immunosuppressants, FK506 and rapamycin. The drugs inhibit T cell proliferation by arresting two distinct cytoplasmic signal transmission pathways. Peptidylprolyl isomerases accelerate protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides. These proteins are found in a variety of organisms.; GO: 0006457 protein folding; PDB: 1IX5_A 3JXV_A 3JYM_A 1T11_A 1PBK_A 1FD9_A 2VCD_A 3B7X_A 1Q6H_B 1Q6I_B ....
Probab=99.85 E-value=1.2e-20 Score=144.12 Aligned_cols=91 Identities=38% Similarity=0.718 Sum_probs=83.3
Q ss_pred CCCCCCEEEEEEEEEEecCCeEEEeccCCCCcceEEEcCCccCCCcccccHHHHhcCCccCcEEEEEeCCCCCCCCCCCC
Q 042997 152 TPRRGDLVVIDLRGEVEGSGQVFVDTFGGNKKPLALVMGSRPYGKGMCEGIEYVLRSMKVGGKRRVIIPPNLAFGANGAD 231 (258)
Q Consensus 152 ~p~~GD~V~v~Y~~~~~d~G~vfdsS~~~~~~p~~f~lG~g~~~~~~i~GleeaL~~Mk~Gek~~v~IPp~laYG~~g~~ 231 (258)
.++.||.|+|||++++.+ |++|++++..+ .++.|.+|.+ .+++||+++|.+|++||+++|+||++++||+.+..
T Consensus 4 ~~~~gd~V~i~y~~~~~~-g~~~~~~~~~~-~~~~~~~g~~----~~i~g~e~al~~m~~Ge~~~~~vp~~~ayg~~~~~ 77 (94)
T PF00254_consen 4 TPKEGDTVTIHYTGRLED-GKVFDSSYQEG-EPFEFRLGSG----QVIPGLEEALIGMKVGEKREFYVPPELAYGEKGLE 77 (94)
T ss_dssp SBSTTSEEEEEEEEEETT-SEEEEETTTTT-SEEEEETTSS----SSSHHHHHHHTTSBTTEEEEEEEEGGGTTTTTTBC
T ss_pred cCCCCCEEEEEEEEEECC-CcEEEEeeecC-cceeeeeccC----ccccchhhhcccccCCCEeeeEeCChhhcCccccC
Confidence 489999999999999986 99999998754 8999999996 69999999999999999999999999999998862
Q ss_pred CCCCCCCCCCCeEEEEEEEE
Q 042997 232 LGDGVQIPPFATLEYIVEVE 251 (258)
Q Consensus 232 ~~~~~~IPpnstLvf~VeL~ 251 (258)
...||+|++|+|+|+|+
T Consensus 78 ---~~~ip~~~~l~f~Iell 94 (94)
T PF00254_consen 78 ---PPKIPPNSTLVFEIELL 94 (94)
T ss_dssp ---TTTBTTTSEEEEEEEEE
T ss_pred ---CCCcCCCCeEEEEEEEC
Confidence 34699999999999996
No 9
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=9.5e-16 Score=144.18 Aligned_cols=106 Identities=37% Similarity=0.559 Sum_probs=93.1
Q ss_pred CCceEEEEEEecCC--CCCCCCCEEEEEEEEEEecCCeEEEeccCCCCcceEEEcCCccCCCcccccHHHHhcCCccCcE
Q 042997 137 PNGIRYYELKVGGG--ATPRRGDLVVIDLRGEVEGSGQVFVDTFGGNKKPLALVMGSRPYGKGMCEGIEYVLRSMKVGGK 214 (258)
Q Consensus 137 ~sGl~y~ilk~G~G--~~p~~GD~V~v~Y~~~~~d~G~vfdsS~~~~~~p~~f~lG~g~~~~~~i~GleeaL~~Mk~Gek 214 (258)
+.||..+|+++|.| ..|.+|..|.|||.+++.+ + +|+++. ..|.|.+|++ -.++.||+.+|..|++||.
T Consensus 83 Dg~iiKriir~G~gd~~~P~~g~~V~v~~~G~~~~-~-~f~~~~----~~fe~~~Ge~---~~vi~Gle~al~~M~~GE~ 153 (397)
T KOG0543|consen 83 DGGIIKRIIREGEGDYSRPNKGAVVKVHLEGELED-G-VFDQRE----LRFEFGEGED---IDVIEGLEIALRMMKVGEV 153 (397)
T ss_pred CCceEEeeeecCCCCCCCCCCCcEEEEEEEEEECC-c-ceeccc----cceEEecCCc---cchhHHHHHHHHhcCccce
Confidence 99999999999999 6799999999999999986 5 787643 3477777774 3799999999999999999
Q ss_pred EEEEeCCCCCCCCCCCCCCCCCCCCCCCeEEEEEEEEEEE
Q 042997 215 RRVIIPPNLAFGANGADLGDGVQIPPFATLEYIVEVEKVS 254 (258)
Q Consensus 215 ~~v~IPp~laYG~~g~~~~~~~~IPpnstLvf~VeL~~V~ 254 (258)
+.|+|+|+++||+.+.. ++.||||++|.|+|+|+++.
T Consensus 154 a~v~i~~~YayG~~~~~---~p~IPPnA~l~yEVeL~~f~ 190 (397)
T KOG0543|consen 154 ALVTIDPKYAYGEEGGE---PPLIPPNATLLYEVELLDFE 190 (397)
T ss_pred EEEEeCcccccCCCCCC---CCCCCCCceEEEEEEEEeee
Confidence 99999999999955432 78999999999999999998
No 10
>PRK15095 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.52 E-value=3.3e-14 Score=119.62 Aligned_cols=71 Identities=25% Similarity=0.458 Sum_probs=65.4
Q ss_pred CCCCCCEEEEEEEEEEecCCeEEEeccCCCCcceEEEcCCccCCCcccccHHHHhcCCccCcEEEEEeCCCCCCCCC
Q 042997 152 TPRRGDLVVIDLRGEVEGSGQVFVDTFGGNKKPLALVMGSRPYGKGMCEGIEYVLRSMKVGGKRRVIIPPNLAFGAN 228 (258)
Q Consensus 152 ~p~~GD~V~v~Y~~~~~d~G~vfdsS~~~~~~p~~f~lG~g~~~~~~i~GleeaL~~Mk~Gek~~v~IPp~laYG~~ 228 (258)
.++.||.|.+||++++.| |++||+|+.++ .|+.|.+|.| .+++||+++|.+|++|++++|.|||++|||+.
T Consensus 4 ~i~~~~~V~v~Y~~~~~d-G~v~dst~~~~-~P~~f~~G~g----~vi~gle~aL~gm~~Ge~~~v~ipp~~ayG~~ 74 (156)
T PRK15095 4 SVQSNSAVLVHFTLKLDD-GSTAESTRNNG-KPALFRLGDG----SLSEGLEQQLLGLKVGDKKTFSLEPEAAFGVP 74 (156)
T ss_pred ccCCCCEEEEEEEEEeCC-CCEEEECCCCC-CCEEEEeCCC----CccHHHHHHHcCCCCCCEEEEEEChHHhcCCC
Confidence 478899999999999977 99999998654 8999999986 68999999999999999999999999999964
No 11
>COG1047 SlpA FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.29 E-value=8.8e-12 Score=106.19 Aligned_cols=71 Identities=32% Similarity=0.484 Sum_probs=65.4
Q ss_pred CCCCCCEEEEEEEEEEecCCeEEEeccCCCCcceEEEcCCccCCCcccccHHHHhcCCccCcEEEEEeCCCCCCCCC
Q 042997 152 TPRRGDLVVIDLRGEVEGSGQVFVDTFGGNKKPLALVMGSRPYGKGMCEGIEYVLRSMKVGGKRRVIIPPNLAFGAN 228 (258)
Q Consensus 152 ~p~~GD~V~v~Y~~~~~d~G~vfdsS~~~~~~p~~f~lG~g~~~~~~i~GleeaL~~Mk~Gek~~v~IPp~laYG~~ 228 (258)
.+.+||.|.+||++++.| |++||+|... ..|+.|.+|.| ++++||++||.+|.+|++.+|.|||+.|||..
T Consensus 2 ~i~k~~~V~i~Y~~~~~d-g~v~Dtt~e~-~~P~~~i~G~g----~li~glE~al~g~~~Ge~~~V~IpPE~AfGe~ 72 (174)
T COG1047 2 KIEKGDVVSLHYTLKVED-GEVVDTTDEN-YGPLTFIVGAG----QLIPGLEEALLGKEVGEEFTVEIPPEDAFGEY 72 (174)
T ss_pred cccCCCEEEEEEEEEecC-CcEEEccccc-CCCeEEEecCC----CcchhHHHHHhCCCCCceeEEEeCchHhcCCC
Confidence 478899999999999998 9999999763 37999999997 69999999999999999999999999999965
No 12
>PRK10737 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.24 E-value=1.8e-11 Score=106.49 Aligned_cols=70 Identities=23% Similarity=0.328 Sum_probs=64.4
Q ss_pred CCCCCCEEEEEEEEEEecCCeEEEeccCCCCcceEEEcCCccCCCcccccHHHHhcCCccCcEEEEEeCCCCCCCCC
Q 042997 152 TPRRGDLVVIDLRGEVEGSGQVFVDTFGGNKKPLALVMGSRPYGKGMCEGIEYVLRSMKVGGKRRVIIPPNLAFGAN 228 (258)
Q Consensus 152 ~p~~GD~V~v~Y~~~~~d~G~vfdsS~~~~~~p~~f~lG~g~~~~~~i~GleeaL~~Mk~Gek~~v~IPp~laYG~~ 228 (258)
++++++.|+++|++++.+ |++|++|+.. .|+.|.+|.+ .+++||+++|.+|++|++++|.|||+.|||+.
T Consensus 2 kI~~~~vV~l~Y~l~~~d-G~v~dst~~~--~Pl~~~~G~g----~lipglE~aL~G~~~Gd~~~v~l~peeAyGe~ 71 (196)
T PRK10737 2 KVAKDLVVSLAYQVRTED-GVLVDESPVS--APLDYLHGHG----SLISGLETALEGHEVGDKFDVAVGANDAYGQY 71 (196)
T ss_pred ccCCCCEEEEEEEEEeCC-CCEEEecCCC--CCeEEEeCCC----cchHHHHHHHcCCCCCCEEEEEEChHHhcCCC
Confidence 467899999999999987 9999999763 7999999996 69999999999999999999999999999964
No 13
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=4.5e-10 Score=106.13 Aligned_cols=82 Identities=30% Similarity=0.475 Sum_probs=72.8
Q ss_pred EecCCC-CCCCCCEEEEEEEEEEecCCeEEEeccCCCCcceEEEcCCccCCCcccccHHHHhcCCccCcEEEEEeCCCCC
Q 042997 146 KVGGGA-TPRRGDLVVIDLRGEVEGSGQVFVDTFGGNKKPLALVMGSRPYGKGMCEGIEYVLRSMKVGGKRRVIIPPNLA 224 (258)
Q Consensus 146 k~G~G~-~p~~GD~V~v~Y~~~~~d~G~vfdsS~~~~~~p~~f~lG~g~~~~~~i~GleeaL~~Mk~Gek~~v~IPp~la 224 (258)
++|+|. .|..||.|.+||++++.| |+.||+|.+ +.++.|.+|.| .++.||..++..|+.
T Consensus 1 ~eg~g~~~p~~g~~v~~hytg~l~d-gt~fdss~d--~~~~~~~lg~g----~vi~~~~~gv~tm~~------------- 60 (397)
T KOG0543|consen 1 KEGTGTETPMTGDKVEVHYTGTLLD-GTKFDSSRD--GDPFKFDLGKG----SVIKGWDLGVATMKK------------- 60 (397)
T ss_pred CCCCCccCCCCCceeEEEEeEEecC-CeecccccC--CCceeeecCCC----ccccccccccccccc-------------
Confidence 478885 599999999999999998 999999987 48999999997 578889999999998
Q ss_pred CCCCCCCCCCCCCCCCCCeEEEEEEEEE
Q 042997 225 FGANGADLGDGVQIPPFATLEYIVEVEK 252 (258)
Q Consensus 225 YG~~g~~~~~~~~IPpnstLvf~VeL~~ 252 (258)
|+.+. ++.||++++|.|+|+|+|
T Consensus 61 -g~~~~----pp~ip~~a~l~fe~el~D 83 (397)
T KOG0543|consen 61 -GEAGS----PPKIPSNATLLFEVELLD 83 (397)
T ss_pred -cccCC----CCCCCCCcceeeeecccC
Confidence 67777 789999999999999854
No 14
>TIGR00115 tig trigger factor. Trigger factor is a ribosome-associated molecular chaperone and is the first chaperone to interact with nascent polypeptide. Trigger factor can bind at the same time as the signal recognition particle (SRP), but is excluded by the SRP receptor (FtsY). The central domain of trigger factor has peptidyl-prolyl cis/trans isomerase activity. This protein is found in a single copy in virtually every bacterial genome.
Probab=98.85 E-value=1.7e-08 Score=96.31 Aligned_cols=86 Identities=24% Similarity=0.358 Sum_probs=75.0
Q ss_pred CCCCCCEEEEEEEEEEecCCeEEEeccCCCCcceEEEcCCccCCCcccccHHHHhcCCccCcEEEEEeCCCCCCCCCCCC
Q 042997 152 TPRRGDLVVIDLRGEVEGSGQVFVDTFGGNKKPLALVMGSRPYGKGMCEGIEYVLRSMKVGGKRRVIIPPNLAFGANGAD 231 (258)
Q Consensus 152 ~p~~GD~V~v~Y~~~~~d~G~vfdsS~~~~~~p~~f~lG~g~~~~~~i~GleeaL~~Mk~Gek~~v~IPp~laYG~~g~~ 231 (258)
.++.||.|+++|+++. + |+.|+++. ..++.|.+|.+ .+++||+++|.||++|+++.|.++....|+..+.
T Consensus 146 ~~~~gD~V~v~~~~~~-d-g~~~~~~~---~~~~~~~lg~~----~~~~~~ee~L~G~k~Gd~~~~~v~~p~~~~~~~~- 215 (408)
T TIGR00115 146 AAEKGDRVTIDFEGFI-D-GEAFEGGK---AENFSLELGSG----QFIPGFEEQLVGMKAGEEKEIKVTFPEDYHAEEL- 215 (408)
T ss_pred ccCCCCEEEEEEEEEE-C-CEECcCCC---CCCeEEEECCC----CcchhHHHHhCCCCCCCeeEEEecCccccCcccC-
Confidence 4788999999999976 5 89987754 36899999985 6899999999999999999999998888887655
Q ss_pred CCCCCCCCCCCeEEEEEEEEEEEe
Q 042997 232 LGDGVQIPPFATLEYIVEVEKVSI 255 (258)
Q Consensus 232 ~~~~~~IPpnstLvf~VeL~~V~~ 255 (258)
+|.++.|+|+|.+|+.
T Consensus 216 --------~gk~~~f~v~i~~I~~ 231 (408)
T TIGR00115 216 --------AGKEATFKVTVKEVKE 231 (408)
T ss_pred --------CCCeEEEEEEEEEecc
Confidence 5889999999999974
No 15
>PRK01490 tig trigger factor; Provisional
Probab=98.74 E-value=6.5e-08 Score=93.19 Aligned_cols=86 Identities=24% Similarity=0.341 Sum_probs=74.2
Q ss_pred CCCCCCEEEEEEEEEEecCCeEEEeccCCCCcceEEEcCCccCCCcccccHHHHhcCCccCcEEEEEeCCCCCCCCCCCC
Q 042997 152 TPRRGDLVVIDLRGEVEGSGQVFVDTFGGNKKPLALVMGSRPYGKGMCEGIEYVLRSMKVGGKRRVIIPPNLAFGANGAD 231 (258)
Q Consensus 152 ~p~~GD~V~v~Y~~~~~d~G~vfdsS~~~~~~p~~f~lG~g~~~~~~i~GleeaL~~Mk~Gek~~v~IPp~laYG~~g~~ 231 (258)
.++.||.|+++|+++. + |+.|+++. ..++.|.+|.+ .+++||+++|.||++|+++.|.++....|+....
T Consensus 157 ~~~~gD~V~vd~~~~~-~-g~~~~~~~---~~~~~~~lg~~----~~~~~fee~L~G~k~Ge~~~~~~~~p~~~~~~~l- 226 (435)
T PRK01490 157 PAENGDRVTIDFVGSI-D-GEEFEGGK---AEDFSLELGSG----RFIPGFEEQLVGMKAGEEKTIDVTFPEDYHAEDL- 226 (435)
T ss_pred cCCCCCEEEEEEEEEE-C-CEECcCCC---CCceEEEEcCC----CcchhHHHHhCCCCCCCeeEEEecCccccccccC-
Confidence 4789999999999997 5 89887654 26899999986 6899999999999999999999987778877655
Q ss_pred CCCCCCCCCCCeEEEEEEEEEEEe
Q 042997 232 LGDGVQIPPFATLEYIVEVEKVSI 255 (258)
Q Consensus 232 ~~~~~~IPpnstLvf~VeL~~V~~ 255 (258)
+|.+..|.|+|.+|+.
T Consensus 227 --------agk~~~f~v~v~~V~~ 242 (435)
T PRK01490 227 --------AGKEATFKVTVKEVKE 242 (435)
T ss_pred --------CCCeEEEEEEEEEecc
Confidence 5789999999999974
No 16
>COG0544 Tig FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones]
Probab=98.41 E-value=1.1e-06 Score=85.25 Aligned_cols=86 Identities=26% Similarity=0.358 Sum_probs=70.6
Q ss_pred CCCCCEEEEEEEEEEecCCeEEEeccCCCCcceEEEcCCccCCCcccccHHHHhcCCccCcEEEEEeCCCCCCCCCCCCC
Q 042997 153 PRRGDLVVIDLRGEVEGSGQVFVDTFGGNKKPLALVMGSRPYGKGMCEGIEYVLRSMKVGGKRRVIIPPNLAFGANGADL 232 (258)
Q Consensus 153 p~~GD~V~v~Y~~~~~d~G~vfdsS~~~~~~p~~f~lG~g~~~~~~i~GleeaL~~Mk~Gek~~v~IPp~laYG~~g~~~ 232 (258)
++.||.|+|+|.++. | |..|.... ...+.|.+|+| .+|+||+++|.||+.|++..|-|--...|.....
T Consensus 158 a~~gD~v~IDf~g~i-D-g~~fegg~---ae~~~l~lGs~----~fipgFe~~LvG~k~Ge~k~i~vtFP~dy~a~~L-- 226 (441)
T COG0544 158 AENGDRVTIDFEGSV-D-GEEFEGGK---AENFSLELGSG----RFIPGFEDQLVGMKAGEEKDIKVTFPEDYHAEEL-- 226 (441)
T ss_pred cccCCEEEEEEEEEE-c-CeeccCcc---ccCeEEEEcCC----CchhhHHhhhccCcCCCeeEEEEEcccccchhHh--
Confidence 889999999999975 5 88886643 35799999997 6999999999999999998876655556666555
Q ss_pred CCCCCCCCCCeEEEEEEEEEEEeC
Q 042997 233 GDGVQIPPFATLEYIVEVEKVSIA 256 (258)
Q Consensus 233 ~~~~~IPpnstLvf~VeL~~V~~~ 256 (258)
.|....|.|+|..|+..
T Consensus 227 -------aGK~a~F~V~vkeVk~~ 243 (441)
T COG0544 227 -------AGKEATFKVKVKEVKKR 243 (441)
T ss_pred -------CCCceEEEEEEEEEeec
Confidence 57788999999999753
No 17
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.63 E-value=1.6e-05 Score=71.77 Aligned_cols=81 Identities=22% Similarity=0.236 Sum_probs=68.9
Q ss_pred EcCCceEEEEEEecCCCC--CCCCCEEEEEEEEEEec-CCeEEEeccCCCCcceEEEcCCccCCCcccccHHHHhcCCcc
Q 042997 135 VLPNGIRYYELKVGGGAT--PRRGDLVVIDLRGEVEG-SGQVFVDTFGGNKKPLALVMGSRPYGKGMCEGIEYVLRSMKV 211 (258)
Q Consensus 135 ~t~sGl~y~ilk~G~G~~--p~~GD~V~v~Y~~~~~d-~G~vfdsS~~~~~~p~~f~lG~g~~~~~~i~GleeaL~~Mk~ 211 (258)
....|++.+++..|+|+- ..+|..|.+||.....+ .++++|+|...+ +|+.+.+|. ..-++-|+..|..|++
T Consensus 7 l~~~gv~Kril~~G~g~l~e~~dGTrv~FHfrtl~~~e~~tviDDsRk~g-kPmeiiiGk----kFkL~VwE~il~tM~v 81 (329)
T KOG0545|consen 7 LNVEGVKKRILHGGTGELPEFIDGTRVIFHFRTLKCDEERTVIDDSRKVG-KPMEIIIGK----KFKLEVWEIILTTMRV 81 (329)
T ss_pred ccchhhhHhhccCCCccCccccCCceEEEEEEecccCcccccccchhhcC-CCeEEeecc----ccccHHHHHHHHHHhh
Confidence 345789999999999975 56899999999987655 477999998875 999999998 4668999999999999
Q ss_pred CcEEEEEeC
Q 042997 212 GGKRRVIIP 220 (258)
Q Consensus 212 Gek~~v~IP 220 (258)
+|...|.+-
T Consensus 82 ~EvaqF~~d 90 (329)
T KOG0545|consen 82 HEVAQFWCD 90 (329)
T ss_pred hhHHHhhhh
Confidence 999888664
No 18
>PF01346 FKBP_N: Domain amino terminal to FKBP-type peptidyl-prolyl isomerase; InterPro: IPR000774 Peptidyl-prolyl cis-trans isomerase (PPIase) catalyses the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides [, ]. This alpha helical domain is found at the N terminus of proteins belonging to the FKBP-type peptidyl-prolyl cis-trans isomerase(IPR001179 from INTERPRO) family. Peptidyl-prolyl cis-trans isomerase has been shown to accelerate the refolding of several proteins in vitro [, , ]; the FKPB-type enzymes probably act in the folding of extracytoplasmic proteins.; GO: 0006457 protein folding; PDB: 1FD9_A 2VCD_A 3OE2_A 2UZ5_A 3B09_A 1Q6H_B 1Q6I_B 1Q6U_A.
Probab=97.45 E-value=0.00016 Score=57.84 Aligned_cols=79 Identities=19% Similarity=0.162 Sum_probs=44.9
Q ss_pred hhhhhhhccccccccchHHHHHHHhHhhhhhhhHHHHHHHh------cccchHHHHHHHHHHHH----------------
Q 042997 64 AKVQQQKRAKPATVESTDWIASSLTRRFGLGAGLAWAGFLA------VGVISEQIKTRLEVSQQ---------------- 121 (258)
Q Consensus 64 ~~~~~~k~~~~~g~~~~~~i~~~l~rR~~lg~~l~~~~~La------~~~~~~~~~~~le~~~~---------------- 121 (258)
.+...||-+|++|+.+++.+...+... +-....+.++-. .....++++..+..+++
T Consensus 18 ~~~~~~k~SYalG~~iG~~l~~~~~~~--ld~~~~~~Gi~dal~~~~~~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~ 95 (124)
T PF01346_consen 18 LKTDEDKLSYALGVQIGQQLKQQGFEQ--LDIDAFLAGIRDALAGKKPKLSDEEAQEALQAFQQKMQAKQQEKMAKAAEK 95 (124)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHCHCC----HHHHHHHHHHHHCTT--SS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHhhhhhc--cCHHHHHHHHHHHHhcCCcCCCHHHHHHHHHHHHHHHHHHhhcchhhhhhh
Confidence 467788999999999999998876553 111112222211 12233333332222221
Q ss_pred ------HHhhhccccCCeEEcCCceEEEE
Q 042997 122 ------EASTRNVEKEEEVVLPNGIRYYE 144 (258)
Q Consensus 122 ------~~~~~~~~~~~~~~t~sGl~y~i 144 (258)
...++|.+++++++|+|||+|+|
T Consensus 96 ~~~~~~~fla~n~k~~GV~~t~SGLqY~V 124 (124)
T PF01346_consen 96 NKAEGEAFLAENAKKEGVKTTESGLQYKV 124 (124)
T ss_dssp HHHHHHHHHHHHHTSTTEEE-TTS-EEEE
T ss_pred hHHHHHHHHHHHcCCCCCEECCCCCeeeC
Confidence 12236678899999999999997
No 19
>KOG0549 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.30 E-value=0.00023 Score=61.28 Aligned_cols=39 Identities=38% Similarity=0.731 Sum_probs=34.1
Q ss_pred EcCCccCCCcccccHHHHhcCCccCcEEEEEeCCCCCCCCCCC
Q 042997 188 VMGSRPYGKGMCEGIEYVLRSMKVGGKRRVIIPPNLAFGANGA 230 (258)
Q Consensus 188 ~lG~g~~~~~~i~GleeaL~~Mk~Gek~~v~IPp~laYG~~g~ 230 (258)
.+|.| .+++|++.+|.+|+.|++++++|||+++||..+.
T Consensus 2 ~~g~~----~vi~gm~~~~~g~c~ge~rkvv~pp~l~fg~~~~ 40 (188)
T KOG0549|consen 2 TLGQG----FVIPGMDQALEGMCNGEKRKVVIPPHLGFGEGGR 40 (188)
T ss_pred cccce----EEecCHHHHhhhhhccccceeccCCccccccccc
Confidence 45554 5899999999999999999999999999996654
No 20
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=42.86 E-value=22 Score=39.21 Aligned_cols=8 Identities=63% Similarity=1.153 Sum_probs=3.9
Q ss_pred CCCCCCCC
Q 042997 39 QPSQPQSP 46 (258)
Q Consensus 39 ~~~~~~~~ 46 (258)
|||||+.|
T Consensus 20 pps~pppP 27 (2365)
T COG5178 20 PPSQPPPP 27 (2365)
T ss_pred CCCCCCCc
Confidence 55654433
No 21
>PRK05753 nucleoside diphosphate kinase regulator; Provisional
Probab=34.27 E-value=1.8e+02 Score=23.76 Aligned_cols=23 Identities=17% Similarity=0.225 Sum_probs=18.6
Q ss_pred ccccHHHHhcCCccCcEEEEEeC
Q 042997 198 MCEGIEYVLRSMKVGGKRRVIIP 220 (258)
Q Consensus 198 ~i~GleeaL~~Mk~Gek~~v~IP 220 (258)
+.--+-.||.|.++|+.+.+..|
T Consensus 91 i~SPlG~ALlG~~~Gd~v~v~~p 113 (137)
T PRK05753 91 VLAPVGAALLGLSVGQSIDWPLP 113 (137)
T ss_pred ccCHHHHHHcCCCCCCEEEEECC
Confidence 34457789999999999998665
No 22
>KOG1830 consensus Wiskott Aldrich syndrome proteins [Cytoskeleton]
Probab=33.40 E-value=1.8e+02 Score=28.68 Aligned_cols=12 Identities=17% Similarity=0.368 Sum_probs=6.5
Q ss_pred hhhhhhhhcccc
Q 042997 63 AAKVQQQKRAKP 74 (258)
Q Consensus 63 ~~~~~~~k~~~~ 74 (258)
+..+++.|+.-+
T Consensus 439 ~~~~~~~~~~lP 450 (518)
T KOG1830|consen 439 VSEAKRPKPVLP 450 (518)
T ss_pred chhccCCCCCCC
Confidence 345566665544
No 23
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=30.55 E-value=4.9e+02 Score=24.96 Aligned_cols=12 Identities=33% Similarity=0.487 Sum_probs=6.3
Q ss_pred ccccCCCccccc
Q 042997 2 ATFFGSPTFLSH 13 (258)
Q Consensus 2 ~~~~~~~~~~~~ 13 (258)
|+|---||.++-
T Consensus 133 a~f~~~pP~ys~ 144 (365)
T KOG2391|consen 133 AAFSEDPPVYSR 144 (365)
T ss_pred HHhcCCCccccC
Confidence 444455566653
No 24
>PF09122 DUF1930: Domain of unknown function (DUF1930); InterPro: IPR015206 This entry represents a domain found in 3-mercaptopyruvate sulphurtransferase which has no known function. This domain adopts a structure consisting of a four-stranded antiparallel beta-sheet and an alpha-helix, arranged in a beta(2)-alpha-beta(2) fashion, and bearing a remarkable structural similarity to the FK506-binding protein class of peptidylprolyl cis/trans-isomerase []. ; PDB: 1OKG_A.
Probab=28.19 E-value=58 Score=23.55 Aligned_cols=23 Identities=17% Similarity=0.314 Sum_probs=17.3
Q ss_pred cccHHHHhcCCccCcEEEEEeCC
Q 042997 199 CEGIEYVLRSMKVGGKRRVIIPP 221 (258)
Q Consensus 199 i~GleeaL~~Mk~Gek~~v~IPp 221 (258)
.+.+..|+..|+.||++.++.-+
T Consensus 34 D~El~sA~~HlH~GEkA~V~FkS 56 (68)
T PF09122_consen 34 DAELKSALVHLHIGEKAQVFFKS 56 (68)
T ss_dssp -HHHHHHHTT-BTT-EEEEEETT
T ss_pred CHHHHHHHHHhhcCceeEEEEec
Confidence 45688999999999999998765
No 25
>PHA02122 hypothetical protein
Probab=25.96 E-value=1.2e+02 Score=21.51 Aligned_cols=19 Identities=26% Similarity=0.595 Sum_probs=15.5
Q ss_pred CCCEEEEEEEEEEecCCeEEE
Q 042997 155 RGDLVVIDLRGEVEGSGQVFV 175 (258)
Q Consensus 155 ~GD~V~v~Y~~~~~d~G~vfd 175 (258)
.||.|.++|.... + |+.|-
T Consensus 40 ~gd~v~vn~e~~~-n-g~l~i 58 (65)
T PHA02122 40 DGDEVIVNFELVV-N-GKLII 58 (65)
T ss_pred CCCEEEEEEEEEE-C-CEEEE
Confidence 5899999999887 4 77763
No 26
>COG2258 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.19 E-value=52 Score=29.20 Aligned_cols=29 Identities=24% Similarity=0.146 Sum_probs=24.2
Q ss_pred EcCCceEEEEEEecCCCCCCCCCEEEEEEEEE
Q 042997 135 VLPNGIRYYELKVGGGATPRRGDLVVIDLRGE 166 (258)
Q Consensus 135 ~t~sGl~y~ilk~G~G~~p~~GD~V~v~Y~~~ 166 (258)
+--+|++|+||++|. +..||.+++-+...
T Consensus 136 ~G~~G~y~RVL~~G~---v~~gD~l~l~~r~~ 164 (210)
T COG2258 136 TGRTGWYARVLEEGK---VRAGDPLKLIPRPS 164 (210)
T ss_pred cCcccEEEEEcccce---ecCCCceEEecCCC
Confidence 445699999999987 88899999888764
No 27
>PRK11536 6-N-hydroxylaminopurine resistance protein; Provisional
Probab=24.20 E-value=59 Score=29.07 Aligned_cols=27 Identities=15% Similarity=0.031 Sum_probs=21.8
Q ss_pred EcCCceEEEEEEecCCCCCCCCCEEEEEEE
Q 042997 135 VLPNGIRYYELKVGGGATPRRGDLVVIDLR 164 (258)
Q Consensus 135 ~t~sGl~y~ilk~G~G~~p~~GD~V~v~Y~ 164 (258)
+.-.|.+|+||++|. +..||.|++.=.
T Consensus 139 ~g~~G~Y~RVL~~G~---V~~GD~v~l~~r 165 (223)
T PRK11536 139 SGKCGWLYRVIAPGK---VSADAPLELVSR 165 (223)
T ss_pred hCCcEEEEEEECCcE---EcCCCEEEEEeC
Confidence 445699999999987 888999887554
No 28
>PRK15095 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=23.48 E-value=80 Score=26.36 Aligned_cols=17 Identities=24% Similarity=0.253 Sum_probs=15.2
Q ss_pred CCCeEEEEEEEEEEEeC
Q 042997 240 PFATLEYIVEVEKVSIA 256 (258)
Q Consensus 240 pnstLvf~VeL~~V~~~ 256 (258)
+|.+|.|+|+|++|+.+
T Consensus 130 AGk~L~f~v~i~~v~~a 146 (156)
T PRK15095 130 AGQTVHFDIEVLEIDPA 146 (156)
T ss_pred CCCEEEEEEEEEEeccC
Confidence 68899999999999865
No 29
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=23.02 E-value=60 Score=25.10 Aligned_cols=13 Identities=38% Similarity=0.248 Sum_probs=6.6
Q ss_pred hhhhhHHHHHHHh
Q 042997 92 GLGAGLAWAGFLA 104 (258)
Q Consensus 92 ~lg~~l~~~~~La 104 (258)
.|.++|+++++|+
T Consensus 6 ~llL~l~LA~lLl 18 (95)
T PF07172_consen 6 FLLLGLLLAALLL 18 (95)
T ss_pred HHHHHHHHHHHHH
Confidence 3445555555554
No 30
>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms]
Probab=22.29 E-value=92 Score=30.76 Aligned_cols=15 Identities=13% Similarity=-0.101 Sum_probs=5.8
Q ss_pred EcCCceEEEEEEecC
Q 042997 135 VLPNGIRYYELKVGG 149 (258)
Q Consensus 135 ~t~sGl~y~ilk~G~ 149 (258)
.+.+.-++..-.+|+
T Consensus 328 ELeGkkW~VEnq~~~ 342 (480)
T KOG2675|consen 328 ELEGKKWRVENQENN 342 (480)
T ss_pred eeccceEEEeeecCC
Confidence 334333333344443
No 31
>PRK10737 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=20.70 E-value=95 Score=27.17 Aligned_cols=17 Identities=29% Similarity=0.268 Sum_probs=15.2
Q ss_pred CCCeEEEEEEEEEEEeC
Q 042997 240 PFATLEYIVEVEKVSIA 256 (258)
Q Consensus 240 pnstLvf~VeL~~V~~~ 256 (258)
++.+|.|+|+|++|+.+
T Consensus 126 AG~~L~F~veV~~vr~a 142 (196)
T PRK10737 126 AGQNLKFNVEVVAIREA 142 (196)
T ss_pred CCCEEEEEEEEEEeccC
Confidence 67899999999999865
Done!