BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042999
(1006 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3KWT|A Chain A, Munc13-1 C2b-Domain, Calcium-Free
pdb|3KWU|A Chain A, Munc13-1 C2b-Domain, Calcium Bound
Length = 148
Score = 50.8 bits (120), Expect = 4e-06, Method: Composition-based stats.
Identities = 41/133 (30%), Positives = 65/133 (48%), Gaps = 13/133 (9%)
Query: 17 KLVVEVVDARDLLPKDGQGSSSPYVIADFDGQRKRTSTKFRDLNPVWNEPLEFIVSDPKN 76
K+ + VV A+ L KD GSS PYV +KRT T + +LNPVW E F + +
Sbjct: 18 KISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIYGNLNPVWEENFHFECHNSSD 77
Query: 77 ------MDCEELEIEVYNDKRYCNGSGRKNHFLGRVKLCGSQFARRGDEGLVYFPLEKKS 130
+D E+ +I+ +R+ S + FLG+ + + D V++ L+K++
Sbjct: 78 RIKVRVLD-EDDDIKSRVKQRFKRES---DDFLGQTIIEVRTLSGEMD---VWYNLDKRT 130
Query: 131 VFSWIRGEIGLRI 143
S + G I L I
Sbjct: 131 DKSAVSGAIRLHI 143
Score = 36.6 bits (83), Expect = 0.079, Method: Composition-based stats.
Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 6/82 (7%)
Query: 642 GSTDAYCVAKYGKKWVRTRTITDCFDPRWNEQYTWQVYDPCTVLTVGVFD-----NWRMF 696
GS+D Y + GK RT+TI +P W E + ++ ++ + V V D R+
Sbjct: 36 GSSDPYVTVQVGKTKKRTKTIYGNLNPVWEENFHFECHNSSDRIKVRVLDEDDDIKSRVK 95
Query: 697 ADASEERPDYRIGKIRIRVSTL 718
E D+ +G+ I V TL
Sbjct: 96 QRFKRESDDF-LGQTIIEVRTL 116
>pdb|2EP6|A Chain A, Solution Structure Of The Second C2 Domain From Human
Mctp2 Protein
Length = 133
Score = 50.4 bits (119), Expect = 4e-06, Method: Composition-based stats.
Identities = 28/91 (30%), Positives = 48/91 (52%), Gaps = 9/91 (9%)
Query: 18 LVVEVVDARDLLPKDGQGSSSPYVIADFDGQRKRTSTKFRDLNPVWNEPLEFIVSDPKNM 77
L V+V+ A DLL D G S P+ + + R +T T +++LNP WN+ F + D ++
Sbjct: 15 LQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIKDIHDV 74
Query: 78 DCEELEIEVYNDKRYCNGSGRKNHFLGRVKL 108
LE+ V+++ + FLG+V +
Sbjct: 75 ----LEVTVFDED-----GDKPPDFLGKVAI 96
Score = 50.1 bits (118), Expect = 6e-06, Method: Composition-based stats.
Identities = 30/105 (28%), Positives = 56/105 (53%), Gaps = 11/105 (10%)
Query: 618 VGILELGILGARGLLPMKTKNGGKGSTDAYCVAKYGKKWVRTRTITDCFDPRWNEQYTWQ 677
VGIL++ +L A LL G +D +C+ + G ++T T+ +P WN+ +T+
Sbjct: 12 VGILQVKVLKAADLLAADFS----GKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFP 67
Query: 678 VYDPCTVLTVGVFDNWRMFADASEERPDYRIGKIRIRVSTLENNK 722
+ D VL V VFD + ++ PD+ +GK+ I + ++ + +
Sbjct: 68 IKDIHDVLEVTVFD------EDGDKPPDF-LGKVAIPLLSIRDGQ 105
>pdb|1DSY|A Chain A, C2 Domain From Protein Kinase C (Alpha) Complexed With
Ca2+ And Phosphatidylserine
Length = 139
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 52/107 (48%), Gaps = 12/107 (11%)
Query: 14 TVRKLVVEVVDARDLLPKDGQGSSSPYV----IADFDGQRKRTSTKFRD-LNPVWNEPLE 68
T KL V V DA++L+P D G S PYV I D + K+ + R LNP WNE
Sbjct: 15 TDEKLHVTVRDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFT 74
Query: 69 FIVSDPKNMDCEELEIEVYNDKRYCNGSGRKNHFLGRVKLCGSQFAR 115
F + P + D L +E+++ R +N F+G + S+ +
Sbjct: 75 FKLK-PSDKD-RRLSVEIWDWDRTT-----RNDFMGSLSFGVSELMK 114
Score = 31.2 bits (69), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 11/78 (14%)
Query: 621 LELGILGARGLLPMKTKNGGKGSTDAYCVAKY-----GKKWVRTRTITDCFDPRWNEQYT 675
L + + A+ L+PM G +D Y K + +T+TI +P+WNE +T
Sbjct: 19 LHVTVRDAKNLIPMDPN----GLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFT 74
Query: 676 WQV--YDPCTVLTVGVFD 691
+++ D L+V ++D
Sbjct: 75 FKLKPSDKDRRLSVEIWD 92
>pdb|3GPE|A Chain A, Crystal Structure Analysis Of Pkc (Alpha)-C2 Domain
Complexed With Ca2+ And Ptdins(4,5)p2
pdb|3RDJ|A Chain A, Rat Pkc C2 Domain Apo
pdb|3TWY|A Chain A, Rat Pkc C2 Domain Bound To Pb
Length = 137
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 52/107 (48%), Gaps = 12/107 (11%)
Query: 14 TVRKLVVEVVDARDLLPKDGQGSSSPYV----IADFDGQRKRTSTKFRD-LNPVWNEPLE 68
T KL V V DA++L+P D G S PYV I D + K+ + R LNP WNE
Sbjct: 14 TDEKLHVTVRDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFT 73
Query: 69 FIVSDPKNMDCEELEIEVYNDKRYCNGSGRKNHFLGRVKLCGSQFAR 115
F + P + D L +E+++ R +N F+G + S+ +
Sbjct: 74 FKLK-PSDKD-RRLSVEIWDWDRTT-----RNDFMGSLSFGVSELMK 113
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 11/78 (14%)
Query: 621 LELGILGARGLLPMKTKNGGKGSTDAYCVAKY-----GKKWVRTRTITDCFDPRWNEQYT 675
L + + A+ L+PM G +D Y K + +T+TI +P+WNE +T
Sbjct: 18 LHVTVRDAKNLIPM----DPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFT 73
Query: 676 WQV--YDPCTVLTVGVFD 691
+++ D L+V ++D
Sbjct: 74 FKLKPSDKDRRLSVEIWD 91
>pdb|4DNL|A Chain A, Crystal Structure Of A C2 Domain Of A Protein Kinase C
Alpha (Prkca) From Homo Sapiens At 1.90 A Resolution
Length = 140
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 50/104 (48%), Gaps = 12/104 (11%)
Query: 17 KLVVEVVDARDLLPKDGQGSSSPYV----IADFDGQRKRTSTKFRD-LNPVWNEPLEFIV 71
KL V V DA++L+P D G S PYV I D + K+ + R LNP WNE F +
Sbjct: 19 KLHVTVRDAKNLIPXDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKL 78
Query: 72 SDPKNMDCEELEIEVYNDKRYCNGSGRKNHFLGRVKLCGSQFAR 115
P + D L +E+++ R +N F G + S+ +
Sbjct: 79 K-PSDKD-RRLSVEIWDWDRTT-----RNDFXGSLSFGVSELXK 115
>pdb|1RH8|A Chain A, Three-Dimensional Structure Of The Calcium-Free Piccolo
C2a- Domain
Length = 142
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 32/132 (24%), Positives = 65/132 (49%), Gaps = 20/132 (15%)
Query: 13 FTVRKLVVEVVDARDLLPKDGQGSSSPYV---IADFDGQ-----------RKRTSTKFRD 58
+ + L++ ++ AR+L+P+D G S P+V + GQ ++RT +
Sbjct: 15 YDLGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKS 74
Query: 59 LNPVWNEPLEFIVSDPKNMDCEELEIEVYNDKRYCNGSGRKNHFLGRVKLCGSQFARRGD 118
LNP WN+ + + + + + LE+ V++ R+ + N FLG V + S + D
Sbjct: 75 LNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSS-----NDFLGEVLIDLSSTSHL-D 128
Query: 119 EGLVYFPLEKKS 130
++PL++++
Sbjct: 129 NTPRWYPLKEQT 140
Score = 33.9 bits (76), Expect = 0.51, Method: Composition-based stats.
Identities = 34/127 (26%), Positives = 51/127 (40%), Gaps = 31/127 (24%)
Query: 298 LFVKIRKARGLVPNEA-----PYVKI-------------RTSSHYKKSKLASYRACDPHD 339
L + I +AR LVP + P+VK+ S+ YK+ ++ +P
Sbjct: 20 LIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNP-- 77
Query: 340 SPEWNQ-VFALFHNKNDSVSATLEITVWDS---PTENFLGGVCFXXXXXXXXXXXXXXXA 395
EWNQ V + + TLE+TVWD + +FLG V
Sbjct: 78 --EWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLI-----DLSSTSHLDNT 130
Query: 396 PQWYRLE 402
P+WY L+
Sbjct: 131 PRWYPLK 137
>pdb|2UZP|A Chain A, Crystal Structure Of The C2 Domain Of Human Protein Kinase
C Gamma.
pdb|2UZP|B Chain B, Crystal Structure Of The C2 Domain Of Human Protein Kinase
C Gamma.
pdb|2UZP|C Chain C, Crystal Structure Of The C2 Domain Of Human Protein Kinase
C Gamma
Length = 144
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 52/108 (48%), Gaps = 14/108 (12%)
Query: 14 TVRKLVVEVVDARDLLPKDGQGSSSPYVIADF-----DGQRKRTSTKFRDLNPVWNEPLE 68
T ++ V V +AR+L+P D G S PYV + +++T T LNPVWNE
Sbjct: 18 TADEIHVTVGEARNLIPMDPNGLSDPYVKLKLIPDPRNLTKQKTRTVKATLNPVWNETFV 77
Query: 69 FIVSDPKNMDCE-ELEIEVYNDKRYCNGSGRKNHFLGRVKLCGSQFAR 115
F + K D E L +EV++ R +N F+G + S+ +
Sbjct: 78 FNL---KPGDVERRLSVEVWDWDRTS-----RNDFMGAMSFGVSELLK 117
>pdb|2NSQ|A Chain A, Crystal Structure Of The C2 Domain Of The Human E3
Ubiquitin-Protein Ligase Nedd4-Like Protein
Length = 155
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 49/98 (50%), Gaps = 16/98 (16%)
Query: 16 RKLVVEVVDARDLLPKDGQGSSSPYV-----IADFDGQRKRTSTKF--RDLNPVWNEPLE 68
R L V+VV DL KD G+S PYV +AD + + TK + LNP WNE
Sbjct: 21 RILRVKVVSGIDLAKKDIFGASDPYVKLSLYVADENRELALVQTKTIKKTLNPKWNEEFY 80
Query: 69 FIVSDPKNMDCEELEIEVYNDKRYCNGSGRKNHFLGRV 106
F V +P N L EV+++ R ++ FLG+V
Sbjct: 81 FRV-NPSN---HRLLFEVFDENRLT-----RDDFLGQV 109
Score = 34.3 bits (77), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 24/42 (57%)
Query: 657 VRTRTITDCFDPRWNEQYTWQVYDPCTVLTVGVFDNWRMFAD 698
V+T+TI +P+WNE++ ++V L VFD R+ D
Sbjct: 62 VQTKTIKKTLNPKWNEEFYFRVNPSNHRLLFEVFDENRLTRD 103
>pdb|1A25|A Chain A, C2 Domain From Protein Kinase C (Beta)
pdb|1A25|B Chain B, C2 Domain From Protein Kinase C (Beta)
Length = 149
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 53/108 (49%), Gaps = 12/108 (11%)
Query: 18 LVVEVVDARDLLPKDGQGSSSPYV----IADFDGQRKRTSTKFR-DLNPVWNEPLEFIVS 72
L+V V DA++L+P D G S PYV I D + K+ + + LNP WNE F +
Sbjct: 33 LIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLK 92
Query: 73 DPKNMDCEELEIEVYNDKRYCNGSGRKNHFLGRVKLCGSQFARRGDEG 120
+ L +E+++ + + R N F+G + S+ + G +G
Sbjct: 93 ESDK--DRRLSVEIWD----WDLTSR-NDFMGSLSFGISELQKAGVDG 133
>pdb|2K3H|A Chain A, Structural Determinants For Ca2+ And Pip2 Binding By The
C2a Domain Of Rabphilin-3a
Length = 140
Score = 40.8 bits (94), Expect = 0.004, Method: Composition-based stats.
Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 10/92 (10%)
Query: 22 VVDARDLLPKDGQGSSSPYVIADF-----DGQRKRTSTKFRDLNPVWNEPLEFIVSDPKN 76
++ A+ L P D G + PYV + RT T NPVWNE L++ ++
Sbjct: 33 IIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHGITEED 92
Query: 77 MDCEELEIEVYNDKRYCNGSGRKNHFLGRVKL 108
M + L I V ++ ++ + N F+G +
Sbjct: 93 MQRKTLRISVCDEDKFGH-----NEFIGETRF 119
>pdb|2CHD|A Chain A, Crystal Structure Of The C2a Domain Of Rabphilin-3a
Length = 142
Score = 40.8 bits (94), Expect = 0.004, Method: Composition-based stats.
Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 10/92 (10%)
Query: 22 VVDARDLLPKDGQGSSSPYVIADF-----DGQRKRTSTKFRDLNPVWNEPLEFIVSDPKN 76
++ A+ L P D G + PYV + RT T NPVWNE L++ ++
Sbjct: 35 IIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHGITEED 94
Query: 77 MDCEELEIEVYNDKRYCNGSGRKNHFLGRVKL 108
M + L I V ++ ++ + N F+G +
Sbjct: 95 MQRKTLRISVCDEDKFGH-----NEFIGETRF 121
>pdb|3PFQ|A Chain A, Crystal Structure And Allosteric Activation Of Protein
Kinase C Beta Ii
Length = 674
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 51/108 (47%), Gaps = 12/108 (11%)
Query: 18 LVVEVVDARDLLPKDGQGSSSPYV----IADFDGQRK-RTSTKFRDLNPVWNEPLEFIVS 72
L+V V DA++L+P D G S PYV I D + K +T T LNP WNE F +
Sbjct: 174 LIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFRFQLK 233
Query: 73 DPKNMDCEELEIEVYNDKRYCNGSGRKNHFLGRVKLCGSQFARRGDEG 120
+ L +E+++ +N F+G + S+ + G +G
Sbjct: 234 ESDKD--RRLSVEIWD-----WDLTSRNDFMGSLSFGISELQKAGVDG 274
Score = 37.7 bits (86), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 39/90 (43%), Gaps = 9/90 (10%)
Query: 298 LFVKIRKARGLVPNE-----APYVKIRTSSHYKKSKLASYRACDPHDSPEWNQVFALFHN 352
L V +R A+ LVP + PYVK++ K + +PEWN+ F F
Sbjct: 174 LIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFR-FQL 232
Query: 353 KNDSVSATLEITVWD---SPTENFLGGVCF 379
K L + +WD + +F+G + F
Sbjct: 233 KESDKDRRLSVEIWDWDLTSRNDFMGSLSF 262
>pdb|1DQV|A Chain A, Crystal Structure Of Synaptotagmin Iii C2aC2B
Length = 296
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 50/95 (52%), Gaps = 9/95 (9%)
Query: 17 KLVVEVVDARDLLPKDGQGSSSPYV-IADFDGQRKRTSTKF--RDLNPVWNEPLEFIVSD 73
+LVV ++ A DL KD G S PYV I ++K+ TK + LNP++NE +F V
Sbjct: 21 QLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPL 80
Query: 74 PKNMDCEELEIEVYNDKRYCNGSGRKNHFLGRVKL 108
+ + +L VY+ R+ ++ +G+V L
Sbjct: 81 AE-LAQRKLHFSVYDFDRFS-----RHDLIGQVVL 109
Score = 38.9 bits (89), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 43/80 (53%), Gaps = 6/80 (7%)
Query: 14 TVRKLVVEVVDARDLLPKDGQGSSSPYVIADF--DGQR---KRTSTKFRDLNPVWNEPLE 68
T L V ++ A +L D G S PYV A +G+R ++TS K LNP +NE L
Sbjct: 150 TAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALV 209
Query: 69 FIVSDPKNMDCEELEIEVYN 88
F V+ P++++ L I V +
Sbjct: 210 FDVA-PESVENVGLSIAVVD 228
>pdb|3HN8|A Chain A, Crystal Structure Of Synaptotagmin
pdb|3HN8|B Chain B, Crystal Structure Of Synaptotagmin
pdb|3HN8|C Chain C, Crystal Structure Of Synaptotagmin
Length = 296
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 50/95 (52%), Gaps = 9/95 (9%)
Query: 17 KLVVEVVDARDLLPKDGQGSSSPYV-IADFDGQRKRTSTKF--RDLNPVWNEPLEFIVSD 73
+LVV ++ A DL KD G S PYV I ++K+ TK + LNP++NE +F V
Sbjct: 22 QLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPL 81
Query: 74 PKNMDCEELEIEVYNDKRYCNGSGRKNHFLGRVKL 108
+ + +L VY+ R+ ++ +G+V L
Sbjct: 82 AE-LAQRKLHFSVYDFDRFS-----RHDLIGQVVL 110
Score = 38.9 bits (89), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 43/80 (53%), Gaps = 6/80 (7%)
Query: 14 TVRKLVVEVVDARDLLPKDGQGSSSPYVIADF--DGQR---KRTSTKFRDLNPVWNEPLE 68
T L V ++ A +L D G S PYV A +G+R ++TS K LNP +NE L
Sbjct: 151 TAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALV 210
Query: 69 FIVSDPKNMDCEELEIEVYN 88
F V+ P++++ L I V +
Sbjct: 211 FDVA-PESVENVGLSIAVVD 229
>pdb|2JQZ|A Chain A, Solution Structure Of The C2 Domain Of Human Smurf2
Length = 131
Score = 38.5 bits (88), Expect = 0.021, Method: Composition-based stats.
Identities = 31/106 (29%), Positives = 48/106 (45%), Gaps = 9/106 (8%)
Query: 17 KLVVEVVDARDLLPKDGQGSSSPY--VIADFDGQRKRTSTKFRDLNPVWNEPLEFIVSDP 74
KL + V+ A++L+ KD P+ V+ D GQ T T L+P WN+ + +
Sbjct: 4 KLRLTVLCAKNLVKKDFFRLPDPFAKVVVDGSGQCHSTDTVKNTLDPKWNQHYDLYIGKS 63
Query: 75 KNMDCEELEIEVYNDKRYCNGSGRKNHFLGRVKLCGSQFARRGDEG 120
+ + I V+N K+ G FLG V+L + R D G
Sbjct: 64 -----DSVTISVWNHKKIHKKQGAG--FLGCVRLLSNAINRLKDTG 102
>pdb|3PYC|A Chain A, Crystal Structure Of Human Smurf1 C2 Domain
Length = 132
Score = 38.1 bits (87), Expect = 0.023, Method: Composition-based stats.
Identities = 36/127 (28%), Positives = 56/127 (44%), Gaps = 11/127 (8%)
Query: 17 KLVVEVVDARDLLPKDGQGSSSPY--VIADFDGQRKRTSTKFRDLNPVWNEPLEFIVSDP 74
K+ + V+ A++L KD P+ ++ D GQ T T L+P WN+ + V
Sbjct: 6 KIRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSGQCHSTDTVKNTLDPKWNQHYDLYVG-- 63
Query: 75 KNMDCEELEIEVYNDKRYCNGSGRKNHFLGRVKLCGSQFARRGDEGLVYFPLEK--KSVF 132
+ + I V+N K+ G FLG V+L + +R D G L K S
Sbjct: 64 ---KTDSITISVWNHKKIHKKQGAG--FLGCVRLLSNAISRLKDTGYQRLDLCKLNPSDT 118
Query: 133 SWIRGEI 139
+RG+I
Sbjct: 119 DAVRGQI 125
>pdb|3JZY|A Chain A, Crystal Structure Of Human Intersectin 2 C2 Domain
Length = 510
Score = 38.1 bits (87), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Query: 642 GSTDAYCVAKYGKKWVRTRTITDCFDPRWNEQYTWQVYDPCT-VLTVGVFDNWRMFADAS 700
G ++ YC G + TRTI D +P+WN + + D VL + +FD + D
Sbjct: 406 GKSNPYCEISMGSQSYTTRTIQDTLNPKWNFNCQFFIKDLYQDVLCLTLFDRDQFSPDDF 465
Query: 701 EERPDYRIGKIR 712
R + + KIR
Sbjct: 466 LGRTEIPVAKIR 477
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 28/59 (47%)
Query: 15 VRKLVVEVVDARDLLPKDGQGSSSPYVIADFDGQRKRTSTKFRDLNPVWNEPLEFIVSD 73
+ +L+V V++A +L G S+PY Q T T LNP WN +F + D
Sbjct: 386 IGRLMVHVIEATELKACKPNGKSNPYCEISMGSQSYTTRTIQDTLNPKWNFNCQFFIKD 444
>pdb|1RLW|A Chain A, Calcium-Phospholipid Binding Domain From Cytosolic
Phospholipase A2
Length = 126
Score = 38.1 bits (87), Expect = 0.026, Method: Composition-based stats.
Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
Query: 36 SSSPYV---IADFDGQRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEI 84
+ PYV I+ RKRT D+NPVWNE EFI+ DP + E+ +
Sbjct: 26 TPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFIL-DPNQENVLEITL 76
>pdb|1BCI|A Chain A, C2 Domain Of Cytosolic Phospholipase A2, Nmr, Minimized
Average Structure
Length = 138
Score = 37.7 bits (86), Expect = 0.029, Method: Composition-based stats.
Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
Query: 36 SSSPYV---IADFDGQRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEI 84
+ PYV I+ RKRT D+NPVWNE EFI+ DP + E+ +
Sbjct: 41 TPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFIL-DPNQENVLEITL 91
>pdb|2D8K|A Chain A, Solution Structure Of The First C2 Domain Of
Synaptotagmin Vii
Length = 141
Score = 36.2 bits (82), Expect = 0.091, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Query: 13 FTVRKLVVEVVDARDLLPKDGQGSSSPYVIADFDGQRK---RTSTKFRDLNPVWNEPLEF 69
F L V+++ A++L KD G+S P+V +K T K ++LNP WNE F
Sbjct: 23 FQESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLF 82
>pdb|1CJY|A Chain A, Human Cytosolic Phospholipase A2
pdb|1CJY|B Chain B, Human Cytosolic Phospholipase A2
Length = 749
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Query: 32 DGQGSSSPYV---IADFDGQRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEI 84
D + PYV I+ RKRT D+NPVWNE EFI+ DP + E+ +
Sbjct: 37 DMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFIL-DPNQENVLEITL 91
>pdb|1RSY|A Chain A, Structure Of The First C2-domain Of Synaptotagmin I: A
Novel Ca2+(slash)phospholipid Binding Fold
Length = 152
Score = 35.0 bits (79), Expect = 0.23, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 4/83 (4%)
Query: 13 FTVRKLVVEVVDARDLLPKDGQGSSSPYV-IADFDGQRKRTSTKF--RDLNPVWNEPLEF 69
F +L+V ++ A +L D G+S PYV + ++K+ TK + LNPV+NE F
Sbjct: 39 FQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTF 98
Query: 70 IVSDPKNMDCEELEIEVYNDKRY 92
V + + + L + VY+ R+
Sbjct: 99 KVPYSE-LGGKTLVMAVYDFDRF 120
>pdb|1BYN|A Chain A, Solution Structure Of The Calcium-Bound First C2-Domain
Of Synaptotagmin I
pdb|2K8M|A Chain A, S100a13-C2a Binary Complex Structure
pdb|2K8M|D Chain D, S100a13-C2a Binary Complex Structure
pdb|2K45|A Chain A, C2a Domain Of Synaptototagmin I Solution Structure In
The Fgf-1-C2a Binary Complex: Key Component In The
Fibroblast Growthfactor Non-Classical Pathway
pdb|2K4A|A Chain A, Fgf-1-C2a Binary Complex Structure: A Key Component In
The Fibroblast Growthfactor Non-Classical Pathway
pdb|2KI6|A Chain A, The Fgf1-S100a13-C2a Hetero-Hexameric Complex Structure:
A C In The Non-Classical Pathway For Fgf1 Secretion
pdb|2KI6|F Chain F, The Fgf1-S100a13-C2a Hetero-Hexameric Complex Structure:
A C In The Non-Classical Pathway For Fgf1 Secretion
Length = 128
Score = 34.7 bits (78), Expect = 0.25, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 4/83 (4%)
Query: 13 FTVRKLVVEVVDARDLLPKDGQGSSSPYV-IADFDGQRKRTSTKF--RDLNPVWNEPLEF 69
F +L+V ++ A +L D G+S PYV + ++K+ TK + LNPV+NE F
Sbjct: 14 FQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTF 73
Query: 70 IVSDPKNMDCEELEIEVYNDKRY 92
V + + + L + VY+ R+
Sbjct: 74 KVPYSE-LGGKTLVMAVYDFDRF 95
>pdb|1W15|A Chain A, Rat Synaptotagmin 4 C2b Domain In The Presence Of Calcium
pdb|1W16|A Chain A, Rat Synaptotagmin 4 C2b Domain In The Absence Of Calcium
Length = 153
Score = 34.7 bits (78), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 45/102 (44%), Gaps = 15/102 (14%)
Query: 14 TVRKLVVEVVDARDLLPKDGQGSSSPYVIADFDGQRKRTSTKFRDL-----NPVWNEPLE 68
T L V V+ AR L D G S PYV + +KR S K + N V+NE
Sbjct: 28 TTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFV 87
Query: 69 FIVSDPKNMDCEELEIE--VYNDKRYCNGSGRKNHFLGRVKL 108
F D EE+ +E V + +R G +N +GR+ L
Sbjct: 88 F---DIPCESLEEISVEFLVLDSER-----GSRNEVIGRLVL 121
>pdb|3F00|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With
Cu(Ii)
Length = 143
Score = 34.7 bits (78), Expect = 0.27, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 4/83 (4%)
Query: 13 FTVRKLVVEVVDARDLLPKDGQGSSSPYV-IADFDGQRKRTSTKF--RDLNPVWNEPLEF 69
F +L+V ++ A +L D G+S PYV + ++K+ TK + LNPV+NE F
Sbjct: 31 FQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTF 90
Query: 70 IVSDPKNMDCEELEIEVYNDKRY 92
V + + + L + VY+ R+
Sbjct: 91 KVPYSE-LGGKTLVMAVYDFDRF 112
>pdb|3F04|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain
pdb|3F01|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With
Cu(Ii)
pdb|3F05|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With
Mn(Ii)
Length = 143
Score = 34.7 bits (78), Expect = 0.28, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 4/83 (4%)
Query: 13 FTVRKLVVEVVDARDLLPKDGQGSSSPYV-IADFDGQRKRTSTKF--RDLNPVWNEPLEF 69
F +L+V ++ A +L D G+S PYV + ++K+ TK + LNPV+NE F
Sbjct: 31 FQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTF 90
Query: 70 IVSDPKNMDCEELEIEVYNDKRY 92
V + + + L + VY+ R+
Sbjct: 91 KVPYSE-LGGKTLVMAVYDFDRF 112
>pdb|2NQ3|A Chain A, Crystal Structure Of The C2 Domain Of Human Itchy
Homolog E3 Ubiquitin Protein Ligase
Length = 173
Score = 34.7 bits (78), Expect = 0.29, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 27/56 (48%)
Query: 17 KLVVEVVDARDLLPKDGQGSSSPYVIADFDGQRKRTSTKFRDLNPVWNEPLEFIVS 72
+L + V+ A+ K SPYV DGQ K+T +P W +PL IV+
Sbjct: 37 QLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIVT 92
>pdb|1EXM|A Chain A, Crystal Structure Of Thermus Thermophilus Elongation
Factor Tu (Ef-Tu) In Complex With The Gtp Analogue
Gppnhp.
pdb|1HA3|A Chain A, Elongation Factor Tu In Complex With Aurodox
pdb|1HA3|B Chain B, Elongation Factor Tu In Complex With Aurodox
pdb|3FIC|Z Chain Z, T. Thermophilus 70s Ribosome In Complex With Mrna, Trnas
And Ef- Tu.Gdp.Kirromycin Ternary Complex, Fitted To A
6.4 A Cryo-Em Map. This File Contains The 30s Subunit
And The Ligands
pdb|2XQD|Z Chain Z, The Structure Of Ef-Tu And Aminoacyl-Trna Bound To The 70s
Ribosome With A Gtp Analog
Length = 405
Score = 34.7 bits (78), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 46/109 (42%), Gaps = 13/109 (11%)
Query: 403 GEASDQNNRVSGDIQL--AVWIGTQADEAFPE-------AWSSDAPYVTHTRSKVYQSPK 453
G A N ++G Q+ A+ + + AD P+ A PY+ +KV
Sbjct: 84 GHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMVDD 143
Query: 454 LWYLRVTVMEAQDLCIAHNLPPLTAPEIRVKAQLALQ----SARTRRGS 498
L + ME +DL + P P IR A LAL+ + +TRRG
Sbjct: 144 PELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGE 192
>pdb|2WRN|Z Chain Z, The Crystal Structure Of The 70s Ribosome Bound To Ef-Tu
And Trna (Part 1 Of 4).
pdb|2WRQ|Z Chain Z, The Crystal Structure Of The 70s Ribosome Bound To Ef-Tu
And Trna (Part 3 Of 4)
Length = 406
Score = 34.7 bits (78), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 46/109 (42%), Gaps = 13/109 (11%)
Query: 403 GEASDQNNRVSGDIQL--AVWIGTQADEAFPE-------AWSSDAPYVTHTRSKVYQSPK 453
G A N ++G Q+ A+ + + AD P+ A PY+ +KV
Sbjct: 85 GHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMVDD 144
Query: 454 LWYLRVTVMEAQDLCIAHNLPPLTAPEIRVKAQLALQ----SARTRRGS 498
L + ME +DL + P P IR A LAL+ + +TRRG
Sbjct: 145 PELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGE 193
>pdb|2Y0U|Z Chain Z, The Crystal Structure Of Ef-Tu And A9c-Trna-Trp Bound To A
Near-Cognate Codon On The 70s Ribosome
pdb|2Y0W|Z Chain Z, The Crystal Structure Of Ef-Tu And A9c-Trna-Trp Bound To A
Near-Cognate Codon On The 70s Ribosome
Length = 405
Score = 34.7 bits (78), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 46/109 (42%), Gaps = 13/109 (11%)
Query: 403 GEASDQNNRVSGDIQL--AVWIGTQADEAFPE-------AWSSDAPYVTHTRSKVYQSPK 453
G A N ++G Q+ A+ + + AD P+ A PY+ +KV
Sbjct: 84 GHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMVDD 143
Query: 454 LWYLRVTVMEAQDLCIAHNLPPLTAPEIRVKAQLALQ----SARTRRGS 498
L + ME +DL + P P IR A LAL+ + +TRRG
Sbjct: 144 PELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGE 192
>pdb|2C77|A Chain A, Ef-Tu Complexed With A Gtp Analog And The Antibiotic
Ge2270 A
Length = 405
Score = 34.7 bits (78), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 46/109 (42%), Gaps = 13/109 (11%)
Query: 403 GEASDQNNRVSGDIQL--AVWIGTQADEAFPE-------AWSSDAPYVTHTRSKVYQSPK 453
G A N ++G Q+ A+ + + AD P+ A PY+ +KV
Sbjct: 84 GHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMVDD 143
Query: 454 LWYLRVTVMEAQDLCIAHNLPPLTAPEIRVKAQLALQ----SARTRRGS 498
L + ME +DL + P P IR A LAL+ + +TRRG
Sbjct: 144 PELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGE 192
>pdb|2Y0Y|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Near-Cognate Codon On The 70s Ribosome
pdb|2Y10|Z Chain Z, The Crystal Structure Of Ef-Tu And Trp-Trna-Trp Bound To A
Cognate Codon On The 70s Ribosome.
pdb|2Y12|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Near-Cognate Codon On The 70s Ribosome
pdb|2Y14|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Cognate Codon On The 70s Ribosome.
pdb|2Y16|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Cognate Codon On The 70s Ribosome.
pdb|2Y18|Z Chain Z, The Crystal Structure Of Ef-Tu And Trp-Trna-Trp Bound To A
Cognate Codon On The 70s Ribosome
Length = 405
Score = 34.7 bits (78), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 46/109 (42%), Gaps = 13/109 (11%)
Query: 403 GEASDQNNRVSGDIQL--AVWIGTQADEAFPE-------AWSSDAPYVTHTRSKVYQSPK 453
G A N ++G Q+ A+ + + AD P+ A PY+ +KV
Sbjct: 84 GHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMVDD 143
Query: 454 LWYLRVTVMEAQDLCIAHNLPPLTAPEIRVKAQLALQ----SARTRRGS 498
L + ME +DL + P P IR A LAL+ + +TRRG
Sbjct: 144 PELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGE 192
>pdb|2C78|A Chain A, Ef-Tu Complexed With A Gtp Analog And The Antibiotic
Pulvomycin
Length = 405
Score = 34.7 bits (78), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 46/109 (42%), Gaps = 13/109 (11%)
Query: 403 GEASDQNNRVSGDIQL--AVWIGTQADEAFPE-------AWSSDAPYVTHTRSKVYQSPK 453
G A N ++G Q+ A+ + + AD P+ A PY+ +KV
Sbjct: 84 GHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMVDD 143
Query: 454 LWYLRVTVMEAQDLCIAHNLPPLTAPEIRVKAQLALQ----SARTRRGS 498
L + ME +DL + P P IR A LAL+ + +TRRG
Sbjct: 144 PELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGE 192
>pdb|1AIP|A Chain A, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|B Chain B, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|E Chain E, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|F Chain F, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
Length = 405
Score = 34.3 bits (77), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 46/109 (42%), Gaps = 13/109 (11%)
Query: 403 GEASDQNNRVSGDIQL--AVWIGTQADEAFPE-------AWSSDAPYVTHTRSKVYQSPK 453
G A N ++G Q+ A+ + + AD P+ A PY+ +KV
Sbjct: 84 GHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMVDD 143
Query: 454 LWYLRVTVMEAQDLCIAHNLPPLTAPEIRVKAQLALQ----SARTRRGS 498
L + ME +DL + P P IR A LAL+ + +TRRG
Sbjct: 144 PELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGE 192
>pdb|3N5A|A Chain A, Synaptotagmin-7, C2b-Domain, Calcium Bound
Length = 138
Score = 34.3 bits (77), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 5/61 (8%)
Query: 14 TVRKLVVEVVDARDLLPKDGQGSSSPYVIADFDGQRKRTSTKF-----RDLNPVWNEPLE 68
+ ++V ++ AR+L D G+S PYV + KR K R+LNP++NE
Sbjct: 14 SANSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFA 73
Query: 69 F 69
F
Sbjct: 74 F 74
>pdb|2BWQ|A Chain A, Crystal Structure Of The Rim2 C2a-Domain At 1.4 Angstrom
Resolution
Length = 129
Score = 33.9 bits (76), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 12/97 (12%)
Query: 17 KLVVEVVDARDLLPKDGQGSSSPYVIADF-----DGQRKRTSTKFRDLNPVWNEPLEFIV 71
+L+V ++ A+DL ++ +PYV F D ++RT T + L P WN+ FI
Sbjct: 19 QLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQT--FIY 76
Query: 72 SDPKNMDCEE--LEIEVYNDKRYCNGSGRKNHFLGRV 106
S + E LEI +++ R ++ FLG +
Sbjct: 77 SPVHRREFRERMLEITLWDQARVRE---EESEFLGEI 110
>pdb|1V27|A Chain A, Solution Structure Of The First C2 Domain Of Rim2
Length = 141
Score = 33.9 bits (76), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 12/97 (12%)
Query: 17 KLVVEVVDARDLLPKDGQGSSSPYVIADF-----DGQRKRTSTKFRDLNPVWNEPLEFIV 71
+L+V ++ A+DL ++ +PYV F D ++RT T + L P WN+ FI
Sbjct: 22 QLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQT--FIY 79
Query: 72 SDPKNMDCEE--LEIEVYNDKRYCNGSGRKNHFLGRV 106
S + E LEI +++ R ++ FLG +
Sbjct: 80 SPVHRREFRERMLEITLWDQARVRE---EESEFLGEI 113
>pdb|2R83|A Chain A, Crystal Structure Analysis Of Human Synaptotagmin 1
C2a-c2b
pdb|2R83|B Chain B, Crystal Structure Analysis Of Human Synaptotagmin 1
C2a-c2b
Length = 284
Score = 33.9 bits (76), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Query: 13 FTVRKLVVEVVDARDLLPKDGQGSSSPYV-IADFDGQRKRTSTKF--RDLNPVWNEPLEF 69
F +L+V ++ A +L D G+S PYV + ++K+ TK + LNPV+NE F
Sbjct: 16 FQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTF 75
Query: 70 IV 71
V
Sbjct: 76 KV 77
>pdb|3B7Y|A Chain A, Crystal Structure Of The C2 Domain Of The E3 Ubiquitin-
Protein Ligase Nedd4
pdb|3B7Y|B Chain B, Crystal Structure Of The C2 Domain Of The E3 Ubiquitin-
Protein Ligase Nedd4
Length = 153
Score = 33.5 bits (75), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 24/42 (57%)
Query: 657 VRTRTITDCFDPRWNEQYTWQVYDPCTVLTVGVFDNWRMFAD 698
V+T+TI +P+WNE+ ++V+ L VFD R+ D
Sbjct: 60 VQTKTIKKSLNPKWNEEILFRVHPQQHRLLFEVFDENRLTRD 101
Score = 33.1 bits (74), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 46/97 (47%), Gaps = 15/97 (15%)
Query: 16 RKLVVEVVDARDLLPKDGQGSSSPYV-IADFDGQRK-----RTSTKFRDLNPVWNEPLEF 69
R + V V+ L KD G+S PYV + +D +T T + LNP WNE + F
Sbjct: 20 RIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILF 79
Query: 70 IVSDPKNMDCEELEIEVYNDKRYCNGSGRKNHFLGRV 106
V ++ L EV+++ R ++ FLG+V
Sbjct: 80 RVHPQQH----RLLFEVFDENRLT-----RDDFLGQV 107
>pdb|1EFT|A Chain A, The Crystal Structure Of Elongation Factor Ef-Tu From
Thermus Aquaticus In The Gtp Conformation
Length = 405
Score = 33.1 bits (74), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 46/109 (42%), Gaps = 13/109 (11%)
Query: 403 GEASDQNNRVSGDIQL--AVWIGTQADEAFPE-------AWSSDAPYVTHTRSKVYQSPK 453
G A N ++G Q+ A+ + + AD P+ A PY+ +KV
Sbjct: 84 GHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMVDD 143
Query: 454 LWYLRVTVMEAQDLCIAHNLPPLTAPEIRVKAQLALQ----SARTRRGS 498
L + ME +DL + P P IR A LAL+ + +T+RG
Sbjct: 144 PELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEEMHKNPKTKRGE 192
>pdb|1TTT|A Chain A, Phe-Trna, Elongation Factor Ef-Tu:gdpnp Ternary Complex
pdb|1TTT|B Chain B, Phe-Trna, Elongation Factor Ef-Tu:gdpnp Ternary Complex
pdb|1TTT|C Chain C, Phe-Trna, Elongation Factor Ef-Tu:gdpnp Ternary Complex
pdb|1TUI|A Chain A, Intact Elongation Factor Tu In Complex With Gdp
pdb|1TUI|B Chain B, Intact Elongation Factor Tu In Complex With Gdp
pdb|1TUI|C Chain C, Intact Elongation Factor Tu In Complex With Gdp
pdb|1B23|P Chain P, E. Coli Cysteinyl-Trna And T. Aquaticus Elongation Factor
Ef-Tu:gtp Ternary Complex
pdb|1ZC8|Y Chain Y, Coordinates Of Tmrna, Smpb, Ef-tu And H44 Fitted Into
Cryo- Em Map Of The 70s Ribosome And Tmrna Complex
pdb|1OB5|A Chain A, T. Aquaticus Elongation Factor Ef-Tu Complexed With The
Antibiotic Enacyloxin Iia, A Gtp Analog, And Phe-Trna
pdb|1OB5|C Chain C, T. Aquaticus Elongation Factor Ef-Tu Complexed With The
Antibiotic Enacyloxin Iia, A Gtp Analog, And Phe-Trna
pdb|1OB5|E Chain E, T. Aquaticus Elongation Factor Ef-Tu Complexed With The
Antibiotic Enacyloxin Iia, A Gtp Analog, And Phe-Trna
Length = 405
Score = 33.1 bits (74), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 45/109 (41%), Gaps = 13/109 (11%)
Query: 403 GEASDQNNRVSGDIQL--AVWIGTQADEAFPE-------AWSSDAPYVTHTRSKVYQSPK 453
G A N ++G Q+ A+ + + AD P+ A PY+ +KV
Sbjct: 84 GHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMVDD 143
Query: 454 LWYLRVTVMEAQDLCIAHNLPPLTAPEIRVKAQLALQSA----RTRRGS 498
L + ME +DL + P P IR A LAL+ +T+RG
Sbjct: 144 PELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEEMHKNPKTKRGE 192
>pdb|4ABR|Z Chain Z, Complex Of Smpb, A Tmrna Fragment And Ef-Tu-Gdp-Kirromycin
With The 70s Ribosome
Length = 405
Score = 33.1 bits (74), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 45/109 (41%), Gaps = 13/109 (11%)
Query: 403 GEASDQNNRVSGDIQL--AVWIGTQADEAFPE-------AWSSDAPYVTHTRSKVYQSPK 453
G A N ++G Q+ A+ + + AD P+ A PY+ +KV
Sbjct: 84 GHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMVDD 143
Query: 454 LWYLRVTVMEAQDLCIAHNLPPLTAPEIRVKAQLALQSA----RTRRGS 498
L + ME +DL + P P IR A LAL+ +T+RG
Sbjct: 144 PELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEEMHKNPKTKRGE 192
>pdb|2DMH|A Chain A, Solution Structure Of The First C2 Domain Of Human
Myoferlin
Length = 140
Score = 32.7 bits (73), Expect = 1.1, Method: Composition-based stats.
Identities = 19/48 (39%), Positives = 27/48 (56%)
Query: 22 VVDARDLLPKDGQGSSSPYVIADFDGQRKRTSTKFRDLNPVWNEPLEF 69
+V++ +PK G P V F ++K+T +LNPVWNE LEF
Sbjct: 12 IVESASNIPKTKFGKPDPIVSVIFKDEKKKTKKVDNELNPVWNEILEF 59
>pdb|2B3R|A Chain A, Crystal Structure Of The C2 Domain Of Class Ii
Phosphatidylinositide 3-Kinase C2
pdb|2B3R|B Chain B, Crystal Structure Of The C2 Domain Of Class Ii
Phosphatidylinositide 3-Kinase C2
Length = 134
Score = 32.0 bits (71), Expect = 1.7, Method: Composition-based stats.
Identities = 28/96 (29%), Positives = 46/96 (47%), Gaps = 11/96 (11%)
Query: 18 LVVEVVDARDLLPKDGQGSSSPYV----IADFDGQRKR-TSTKFRDLNPVWNEPLEFIVS 72
L + V+ +DL+ +DG +PYV + D KR T + NP +NE L +
Sbjct: 22 LFIMVMHIKDLVTEDG-ADPNPYVKTYLLPDTHKTSKRKTKISRKTRNPTFNEMLVYSGY 80
Query: 73 DPKNMDCEELEIEVYNDKRYCNGSGRKNHFLGRVKL 108
+ + EL++ V + + S R+N FLG + L
Sbjct: 81 SKETLRQRELQLSVLSAE-----SLRENFFLGGITL 111
>pdb|3M7F|B Chain B, Crystal Structure Of The Nedd4 C2GRB10 SH2 COMPLEX
Length = 176
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 657 VRTRTITDCFDPRWNEQYTWQVYDPCTVLTVGVFDNWRMFAD 698
V+T+TI +P+WNE+ ++V + VFD R+ D
Sbjct: 48 VQTKTIKKSLNPKWNEEILFRVLPQRHRILFEVFDENRLTRD 89
Score = 31.6 bits (70), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 48/100 (48%), Gaps = 15/100 (15%)
Query: 15 VRKLVVEVVDARDLLPKDGQGSSSPYV-IADFDGQRK-----RTSTKFRDLNPVWNEPLE 68
R + V+V+ L KD G+S PYV + +D +T T + LNP WNE +
Sbjct: 7 TRVVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEIL 66
Query: 69 FIVSDPKNMDCEELEIEVYNDKRYCNGSGRKNHFLGRVKL 108
F V ++ + EV+++ R ++ FLG+V +
Sbjct: 67 FRVLPQRH----RILFEVFDENRLT-----RDDFLGQVDV 97
>pdb|1VPY|A Chain A, Crystal Structure Of A Duf72 Family Protein (ef0366) From
Enterococcus Faecalis V583 At 2.52 A Resolution
Length = 289
Score = 31.6 bits (70), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 4/83 (4%)
Query: 280 EVPTERI--HPYDLVEPMMYLF-VKIRKARGLVPNEAPYVKIRTSSHYKKSKLASYRACD 336
++PT + +PY + P + LF R A G + N+A + K RT HY ++A
Sbjct: 183 QIPTNPVPFYPY-VTNPNLVLFRFHGRNAAGWLANDAEWRKKRTLYHYNTQEIADLSEAV 241
Query: 337 PHDSPEWNQVFALFHNKNDSVSA 359
S E +V +F+N + +A
Sbjct: 242 LKXSQEAKEVGVIFNNNSGGDAA 264
>pdb|1ZTV|A Chain A, Crystal Structure Of A Duf72 Family Protein (Ef0366) From
Enterococcus Faecalis V583 At 3.10 A Resolution
pdb|1ZTV|B Chain B, Crystal Structure Of A Duf72 Family Protein (Ef0366) From
Enterococcus Faecalis V583 At 3.10 A Resolution
Length = 289
Score = 30.8 bits (68), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 4/83 (4%)
Query: 280 EVPTERI--HPYDLVEPMMYLF-VKIRKARGLVPNEAPYVKIRTSSHYKKSKLASYRACD 336
++PT + +PY + P + LF R A G + N+A + K RT HY ++A
Sbjct: 183 QIPTNPVPFYPY-VTNPNLVLFRFHGRNAAGWLANDAEWRKKRTLYHYNTQEIADLSEAV 241
Query: 337 PHDSPEWNQVFALFHNKNDSVSA 359
S E +V +F+N + +A
Sbjct: 242 LKMSQEAKEVGVIFNNNSGGDAA 264
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.435
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,463,038
Number of Sequences: 62578
Number of extensions: 1285417
Number of successful extensions: 2290
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 2228
Number of HSP's gapped (non-prelim): 81
length of query: 1006
length of database: 14,973,337
effective HSP length: 108
effective length of query: 898
effective length of database: 8,214,913
effective search space: 7376991874
effective search space used: 7376991874
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)