Query 042999
Match_columns 1006
No_of_seqs 527 out of 3924
Neff 9.0
Searched_HMMs 46136
Date Fri Mar 29 11:46:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042999.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042999hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5038 Ca2+-dependent lipid-b 100.0 6.5E-35 1.4E-39 339.7 43.5 543 12-754 432-1164(1227)
2 PF08372 PRT_C: Plant phosphor 100.0 5.3E-34 1.2E-38 268.1 13.7 131 876-1006 1-131 (156)
3 COG5038 Ca2+-dependent lipid-b 99.9 6.4E-22 1.4E-26 231.9 34.0 390 295-756 435-845 (1227)
4 KOG1028 Ca2+-dependent phospho 99.9 1E-22 2.3E-27 229.8 21.7 211 15-383 166-393 (421)
5 KOG1028 Ca2+-dependent phospho 99.9 1.8E-22 4E-27 227.9 23.0 216 453-717 165-393 (421)
6 KOG2059 Ras GTPase-activating 99.9 1.2E-22 2.6E-27 225.3 15.7 250 456-756 6-281 (800)
7 cd08379 C2D_MCTP_PRT_plant C2 99.9 4.7E-22 1E-26 185.8 15.3 125 620-746 1-125 (126)
8 cd04016 C2_Tollip C2 domain pr 99.9 1.5E-21 3.2E-26 181.3 14.7 119 618-750 1-121 (121)
9 cd04019 C2C_MCTP_PRT_plant C2 99.9 1.9E-21 4E-26 188.9 15.0 147 456-608 1-150 (150)
10 KOG1326 Membrane-associated pr 99.9 1.5E-20 3.2E-25 216.0 20.0 402 14-550 204-703 (1105)
11 KOG1030 Predicted Ca2+-depende 99.8 5.7E-21 1.2E-25 179.4 10.3 116 617-747 4-119 (168)
12 cd04016 C2_Tollip C2 domain pr 99.8 7E-20 1.5E-24 170.1 14.6 120 15-145 1-121 (121)
13 cd04015 C2_plant_PLD C2 domain 99.8 8.2E-20 1.8E-24 179.5 15.7 125 618-751 6-158 (158)
14 cd08682 C2_Rab11-FIP_classI C2 99.8 5.5E-20 1.2E-24 174.9 13.6 118 621-749 1-126 (126)
15 KOG2059 Ras GTPase-activating 99.8 1.6E-19 3.5E-24 200.8 16.6 124 15-149 4-128 (800)
16 cd04019 C2C_MCTP_PRT_plant C2 99.8 1.9E-19 4E-24 174.9 15.1 136 620-766 1-147 (150)
17 cd04042 C2A_MCTP_PRT C2 domain 99.8 2.3E-19 4.9E-24 169.4 14.9 120 620-752 1-121 (121)
18 cd04022 C2A_MCTP_PRT_plant C2 99.8 1.5E-19 3.2E-24 172.1 13.4 125 17-146 1-126 (127)
19 cd08401 C2A_RasA2_RasA3 C2 dom 99.8 1.1E-18 2.3E-23 164.0 14.8 119 621-750 2-121 (121)
20 cd08400 C2_Ras_p21A1 C2 domain 99.8 1.5E-18 3.3E-23 164.4 16.1 120 618-752 3-124 (126)
21 cd08682 C2_Rab11-FIP_classI C2 99.8 8.2E-19 1.8E-23 166.8 13.5 122 18-144 1-126 (126)
22 cd08375 C2_Intersectin C2 doma 99.8 3.9E-18 8.4E-23 163.3 15.7 119 615-750 11-135 (136)
23 cd08377 C2C_MCTP_PRT C2 domain 99.8 4E-18 8.6E-23 160.7 14.9 118 619-750 1-118 (119)
24 cd08376 C2B_MCTP_PRT C2 domain 99.8 3.9E-18 8.5E-23 159.9 14.7 114 620-751 1-115 (116)
25 cd08678 C2_C21orf25-like C2 do 99.8 4.2E-18 9.1E-23 161.8 14.8 120 621-753 1-122 (126)
26 cd04022 C2A_MCTP_PRT_plant C2 99.8 2.8E-18 6.1E-23 163.4 13.6 121 620-751 1-126 (127)
27 cd08681 C2_fungal_Inn1p-like C 99.8 2.3E-18 5E-23 162.0 12.0 116 619-750 1-118 (118)
28 cd08378 C2B_MCTP_PRT_plant C2 99.8 5.3E-18 1.1E-22 159.2 14.2 118 297-424 1-121 (121)
29 cd08379 C2D_MCTP_PRT_plant C2 99.8 7.4E-18 1.6E-22 157.6 14.0 119 18-141 2-125 (126)
30 cd04042 C2A_MCTP_PRT C2 domain 99.8 9.7E-18 2.1E-22 158.3 14.6 120 17-147 1-121 (121)
31 cd04024 C2A_Synaptotagmin-like 99.8 1.1E-17 2.3E-22 160.1 13.9 123 619-750 1-128 (128)
32 cd08401 C2A_RasA2_RasA3 C2 dom 99.7 1.7E-17 3.8E-22 155.7 13.9 118 18-145 2-121 (121)
33 cd04033 C2_NEDD4_NEDD4L C2 dom 99.7 1.4E-17 3E-22 160.3 13.6 119 620-750 1-132 (133)
34 KOG1030 Predicted Ca2+-depende 99.7 6.1E-18 1.3E-22 159.1 10.5 94 15-117 5-98 (168)
35 cd04054 C2A_Rasal1_RasA4 C2 do 99.7 2.5E-17 5.4E-22 155.1 14.4 117 621-749 2-120 (121)
36 cd04046 C2_Calpain C2 domain p 99.7 4.7E-17 1E-21 154.4 16.3 120 618-752 2-123 (126)
37 cd08681 C2_fungal_Inn1p-like C 99.7 1.6E-17 3.5E-22 156.2 13.0 117 16-145 1-118 (118)
38 cd08395 C2C_Munc13 C2 domain t 99.7 1.9E-17 4E-22 153.5 12.2 107 17-130 1-114 (120)
39 cd08391 C2A_C2C_Synaptotagmin_ 99.7 2.8E-17 6.1E-22 155.5 13.7 117 619-750 1-121 (121)
40 cd04025 C2B_RasA1_RasA4 C2 dom 99.7 2.6E-17 5.5E-22 156.0 13.3 119 620-749 1-123 (123)
41 cd08375 C2_Intersectin C2 doma 99.7 5.3E-17 1.1E-21 155.5 15.3 121 12-145 11-135 (136)
42 cd08376 C2B_MCTP_PRT C2 domain 99.7 5.5E-17 1.2E-21 152.1 14.6 115 17-146 1-115 (116)
43 cd08381 C2B_PI3K_class_II C2 d 99.7 3.9E-17 8.4E-22 153.6 13.2 100 619-730 13-121 (122)
44 cd08378 C2B_MCTP_PRT_plant C2 99.7 3.7E-17 8.1E-22 153.5 13.0 114 18-145 2-119 (121)
45 cd04033 C2_NEDD4_NEDD4L C2 dom 99.7 4E-17 8.7E-22 157.1 13.5 121 17-146 1-133 (133)
46 cd04054 C2A_Rasal1_RasA4 C2 do 99.7 5.6E-17 1.2E-21 152.7 13.9 118 18-144 2-120 (121)
47 cd04024 C2A_Synaptotagmin-like 99.7 4.9E-17 1.1E-21 155.5 13.4 122 16-145 1-128 (128)
48 cd08394 C2A_Munc13 C2 domain f 99.7 5.3E-17 1.2E-21 149.2 12.8 99 295-405 1-103 (127)
49 cd08678 C2_C21orf25-like C2 do 99.7 7.5E-17 1.6E-21 153.2 14.2 120 18-149 1-123 (126)
50 cd04029 C2A_SLP-4_5 C2 domain 99.7 8.8E-17 1.9E-21 151.9 13.9 105 617-731 13-125 (125)
51 cd04013 C2_SynGAP_like C2 doma 99.7 1.4E-16 3E-21 152.0 15.1 126 617-754 9-142 (146)
52 cd08394 C2A_Munc13 C2 domain f 99.7 5.7E-17 1.2E-21 149.0 12.0 99 619-733 2-102 (127)
53 cd08400 C2_Ras_p21A1 C2 domain 99.7 1.5E-16 3.2E-21 150.8 15.2 121 15-148 3-125 (126)
54 cd04036 C2_cPLA2 C2 domain pre 99.7 8.3E-17 1.8E-21 151.4 13.2 113 621-751 2-118 (119)
55 cd08393 C2A_SLP-1_2 C2 domain 99.7 7.4E-17 1.6E-21 152.6 12.9 104 618-731 14-125 (125)
56 cd08395 C2C_Munc13 C2 domain t 99.7 8.1E-17 1.8E-21 149.2 12.6 101 620-732 1-112 (120)
57 cd04027 C2B_Munc13 C2 domain s 99.7 1.2E-16 2.6E-21 151.8 14.1 122 620-748 2-127 (127)
58 cd08377 C2C_MCTP_PRT C2 domain 99.7 1.6E-16 3.5E-21 149.7 14.9 118 16-145 1-118 (119)
59 cd04046 C2_Calpain C2 domain p 99.7 2E-16 4.4E-21 150.1 15.5 122 15-149 2-125 (126)
60 cd08381 C2B_PI3K_class_II C2 d 99.7 5.5E-17 1.2E-21 152.6 11.5 105 15-126 12-121 (122)
61 cd08677 C2A_Synaptotagmin-13 C 99.7 4.9E-17 1.1E-21 148.1 10.5 103 14-126 12-118 (118)
62 cd04044 C2A_Tricalbin-like C2 99.7 1.1E-16 2.5E-21 152.0 13.4 121 618-752 1-124 (124)
63 cd04039 C2_PSD C2 domain prese 99.7 8.5E-17 1.8E-21 147.4 11.8 97 619-722 1-99 (108)
64 cd04028 C2B_RIM1alpha C2 domai 99.7 9.2E-17 2E-21 153.8 12.1 105 619-733 29-139 (146)
65 cd08677 C2A_Synaptotagmin-13 C 99.7 8.3E-17 1.8E-21 146.6 11.0 101 616-730 11-118 (118)
66 cd04014 C2_PKC_epsilon C2 doma 99.7 3E-16 6.4E-21 150.5 15.5 119 618-752 3-130 (132)
67 cd04025 C2B_RasA1_RasA4 C2 dom 99.7 1.9E-16 4E-21 150.0 13.7 118 17-143 1-122 (123)
68 cd04036 C2_cPLA2 C2 domain pre 99.7 1.9E-16 4.1E-21 149.0 13.3 113 18-145 2-117 (119)
69 cd08382 C2_Smurf-like C2 domai 99.7 2.1E-16 4.6E-21 149.2 13.6 116 18-143 2-122 (123)
70 cd04010 C2B_RasA3 C2 domain se 99.7 1.1E-16 2.5E-21 154.4 11.8 116 620-748 1-147 (148)
71 cd08391 C2A_C2C_Synaptotagmin_ 99.7 2.2E-16 4.7E-21 149.4 13.6 115 16-145 1-121 (121)
72 cd04010 C2B_RasA3 C2 domain se 99.7 1.1E-16 2.4E-21 154.5 11.7 108 17-131 1-125 (148)
73 cd08688 C2_KIAA0528-like C2 do 99.7 1E-16 2.2E-21 148.2 10.7 102 621-732 1-109 (110)
74 cd04027 C2B_Munc13 C2 domain s 99.7 3.3E-16 7.1E-21 148.9 14.3 120 17-143 2-127 (127)
75 cd08387 C2A_Synaptotagmin-8 C2 99.7 2.5E-16 5.3E-21 149.5 13.1 104 617-731 14-123 (124)
76 cd04015 C2_plant_PLD C2 domain 99.7 3.7E-16 8E-21 153.6 14.3 121 15-146 6-158 (158)
77 cd08373 C2A_Ferlin C2 domain f 99.7 6.8E-16 1.5E-20 147.1 14.7 115 625-754 2-119 (127)
78 cd08382 C2_Smurf-like C2 domai 99.7 4.2E-16 9E-21 147.3 12.9 117 621-748 2-122 (123)
79 cd04050 C2B_Synaptotagmin-like 99.7 3.9E-16 8.5E-21 143.1 12.0 99 620-732 1-102 (105)
80 cd08385 C2A_Synaptotagmin-1-5- 99.7 7.3E-16 1.6E-20 146.3 13.9 104 617-731 14-123 (124)
81 cd04017 C2D_Ferlin C2 domain f 99.7 9.5E-16 2.1E-20 147.4 14.8 125 16-148 1-134 (135)
82 cd08685 C2_RGS-like C2 domain 99.7 5E-16 1.1E-20 145.1 12.3 101 619-730 12-119 (119)
83 cd08392 C2A_SLP-3 C2 domain fi 99.7 9.2E-16 2E-20 145.1 14.1 104 617-730 13-127 (128)
84 cd08393 C2A_SLP-1_2 C2 domain 99.7 3.2E-16 6.9E-21 148.3 10.9 106 15-127 14-125 (125)
85 cd04044 C2A_Tricalbin-like C2 99.7 7.1E-16 1.5E-20 146.6 12.9 120 16-147 2-124 (124)
86 cd04041 C2A_fungal C2 domain f 99.7 3E-16 6.6E-21 145.3 9.9 99 619-731 1-107 (111)
87 cd04028 C2B_RIM1alpha C2 domai 99.7 7.2E-16 1.6E-20 147.7 12.6 106 15-130 28-140 (146)
88 PF04842 DUF639: Plant protein 99.7 7.3E-16 1.6E-20 174.5 14.6 165 820-1004 480-647 (683)
89 cd08386 C2A_Synaptotagmin-7 C2 99.7 1.2E-15 2.7E-20 145.0 14.0 104 617-731 14-124 (125)
90 cd08388 C2A_Synaptotagmin-4-11 99.7 1.2E-15 2.5E-20 144.9 13.7 104 618-731 15-127 (128)
91 cd04031 C2A_RIM1alpha C2 domai 99.7 1E-15 2.2E-20 145.6 13.4 103 617-731 14-125 (125)
92 cd04017 C2D_Ferlin C2 domain f 99.7 1.6E-15 3.5E-20 145.8 14.8 118 620-752 2-133 (135)
93 cd04029 C2A_SLP-4_5 C2 domain 99.7 5.8E-16 1.3E-20 146.3 11.4 107 14-127 13-125 (125)
94 PLN03008 Phospholipase D delta 99.7 7.5E-16 1.6E-20 179.5 14.5 106 641-754 74-180 (868)
95 cd08691 C2_NEDL1-like C2 domai 99.7 1.8E-15 3.9E-20 144.0 14.6 119 17-143 2-136 (137)
96 cd04014 C2_PKC_epsilon C2 doma 99.7 2E-15 4.3E-20 144.9 14.9 116 15-147 3-130 (132)
97 cd04050 C2B_Synaptotagmin-like 99.6 9.3E-16 2E-20 140.6 11.7 103 17-130 1-104 (105)
98 cd04030 C2C_KIAA1228 C2 domain 99.6 1.6E-15 3.4E-20 144.8 13.6 103 617-730 14-126 (127)
99 cd04018 C2C_Ferlin C2 domain t 99.6 1.2E-15 2.7E-20 147.3 12.2 105 620-732 1-125 (151)
100 cd08688 C2_KIAA0528-like C2 do 99.6 8.2E-16 1.8E-20 142.2 10.5 105 18-128 1-109 (110)
101 cd04039 C2_PSD C2 domain prese 99.6 1.2E-15 2.7E-20 139.6 11.5 93 16-115 1-97 (108)
102 cd08392 C2A_SLP-3 C2 domain fi 99.6 1.1E-15 2.3E-20 144.6 11.3 106 15-126 14-127 (128)
103 cd08680 C2_Kibra C2 domain fou 99.6 1.1E-15 2.4E-20 143.1 10.7 107 14-126 12-124 (124)
104 cd04038 C2_ArfGAP C2 domain pr 99.6 1.6E-15 3.5E-20 146.0 12.1 92 618-721 1-92 (145)
105 cd04032 C2_Perforin C2 domain 99.6 2.1E-15 4.5E-20 141.4 12.3 95 615-721 24-120 (127)
106 cd04043 C2_Munc13_fungal C2 do 99.6 4E-15 8.6E-20 141.7 14.5 114 620-752 2-122 (126)
107 cd04041 C2A_fungal C2 domain f 99.6 1.1E-15 2.4E-20 141.6 10.2 104 16-128 1-108 (111)
108 cd08521 C2A_SLP C2 domain firs 99.6 3.4E-15 7.4E-20 141.6 13.6 104 617-730 12-123 (123)
109 cd04031 C2A_RIM1alpha C2 domai 99.6 1.8E-15 3.9E-20 144.0 11.6 107 14-127 14-125 (125)
110 cd08690 C2_Freud-1 C2 domain f 99.6 6.1E-15 1.3E-19 142.2 15.3 118 621-752 4-138 (155)
111 cd08388 C2A_Synaptotagmin-4-11 99.6 2E-15 4.4E-20 143.3 11.8 107 15-127 15-127 (128)
112 cd04051 C2_SRC2_like C2 domain 99.6 1.8E-15 3.8E-20 143.9 11.2 113 620-746 1-125 (125)
113 cd04011 C2B_Ferlin C2 domain s 99.6 3.2E-15 7E-20 138.6 12.4 100 618-732 3-110 (111)
114 cd08373 C2A_Ferlin C2 domain f 99.6 6.5E-15 1.4E-19 140.3 14.8 119 22-150 2-120 (127)
115 cd04049 C2_putative_Elicitor-r 99.6 2.7E-15 5.8E-20 142.3 12.1 103 619-732 1-108 (124)
116 cd04020 C2B_SLP_1-2-3-4 C2 dom 99.6 3.4E-15 7.4E-20 147.3 13.0 106 616-732 24-138 (162)
117 cd08685 C2_RGS-like C2 domain 99.6 2E-15 4.4E-20 141.0 10.4 105 14-126 10-119 (119)
118 cd04043 C2_Munc13_fungal C2 do 99.6 7.1E-15 1.5E-19 140.0 14.3 118 17-149 2-124 (126)
119 cd08386 C2A_Synaptotagmin-7 C2 99.6 3.2E-15 7E-20 142.1 11.9 107 15-127 15-124 (125)
120 cd08387 C2A_Synaptotagmin-8 C2 99.6 3.3E-15 7.2E-20 141.7 11.8 106 15-127 15-123 (124)
121 cd08389 C2A_Synaptotagmin-14_1 99.6 3E-15 6.5E-20 141.3 11.4 108 14-128 14-124 (124)
122 cd08389 C2A_Synaptotagmin-14_1 99.6 6.8E-15 1.5E-19 138.9 13.6 102 618-731 15-123 (124)
123 cd04045 C2C_Tricalbin-like C2 99.6 3.5E-15 7.6E-20 139.9 11.5 103 619-733 1-104 (120)
124 cd08390 C2A_Synaptotagmin-15-1 99.6 6.9E-15 1.5E-19 139.5 13.6 105 617-731 12-122 (123)
125 cd08680 C2_Kibra C2 domain fou 99.6 3.3E-15 7.1E-20 139.9 11.2 104 616-730 11-124 (124)
126 cd08385 C2A_Synaptotagmin-1-5- 99.6 4.2E-15 9.2E-20 141.0 11.9 107 14-127 14-123 (124)
127 cd08383 C2A_RasGAP C2 domain ( 99.6 8E-15 1.7E-19 137.7 13.2 112 621-750 2-117 (117)
128 cd08675 C2B_RasGAP C2 domain s 99.6 3.9E-15 8.4E-20 142.9 10.7 103 621-735 1-123 (137)
129 cd04011 C2B_Ferlin C2 domain s 99.6 5E-15 1.1E-19 137.4 10.9 105 15-128 3-110 (111)
130 cd04018 C2C_Ferlin C2 domain t 99.6 6.1E-15 1.3E-19 142.5 11.7 106 17-129 1-126 (151)
131 cd04020 C2B_SLP_1-2-3-4 C2 dom 99.6 6.9E-15 1.5E-19 145.1 11.0 109 14-128 25-138 (162)
132 cd04040 C2D_Tricalbin-like C2 99.6 1.6E-14 3.4E-19 135.2 12.7 112 621-746 1-114 (115)
133 cd08676 C2A_Munc13-like C2 dom 99.6 9.1E-15 2E-19 141.5 11.3 100 615-730 24-153 (153)
134 cd04021 C2_E3_ubiquitin_ligase 99.6 2.8E-14 6.1E-19 135.0 13.6 117 16-143 2-124 (125)
135 cd04051 C2_SRC2_like C2 domain 99.6 1.1E-14 2.3E-19 138.5 10.7 118 17-141 1-125 (125)
136 cd04030 C2C_KIAA1228 C2 domain 99.6 1.6E-14 3.4E-19 137.9 11.8 109 14-127 14-127 (127)
137 cd08521 C2A_SLP C2 domain firs 99.6 1.5E-14 3.3E-19 137.1 11.7 106 14-126 12-123 (123)
138 cd04049 C2_putative_Elicitor-r 99.6 2.4E-14 5.1E-19 135.8 13.0 109 16-130 1-110 (124)
139 cd04009 C2B_Munc13-like C2 dom 99.6 2E-14 4.4E-19 137.8 12.3 92 618-720 15-118 (133)
140 cd04021 C2_E3_ubiquitin_ligase 99.6 4E-14 8.7E-19 134.0 14.0 116 620-748 3-124 (125)
141 cd04032 C2_Perforin C2 domain 99.6 2.6E-14 5.6E-19 134.0 12.0 93 13-113 25-117 (127)
142 cd04038 C2_ArfGAP C2 domain pr 99.6 1.8E-14 3.9E-19 138.7 11.2 91 16-116 2-92 (145)
143 cd08390 C2A_Synaptotagmin-15-1 99.6 2.6E-14 5.6E-19 135.5 12.2 108 14-128 12-123 (123)
144 cd08383 C2A_RasGAP C2 domain ( 99.6 3.6E-14 7.8E-19 133.3 13.1 115 18-145 2-117 (117)
145 KOG0696 Serine/threonine prote 99.6 1.3E-15 2.8E-20 160.3 3.5 104 16-128 180-288 (683)
146 cd04026 C2_PKC_alpha_gamma C2 99.6 2.6E-14 5.7E-19 137.0 12.3 103 619-733 13-122 (131)
147 cd08406 C2B_Synaptotagmin-12 C 99.6 9.1E-15 2E-19 139.5 9.0 103 617-732 13-123 (136)
148 cd08404 C2B_Synaptotagmin-4 C2 99.6 1.1E-14 2.4E-19 140.3 9.5 103 617-732 13-123 (136)
149 cd08407 C2B_Synaptotagmin-13 C 99.6 1.7E-14 3.7E-19 137.3 10.5 105 617-732 13-125 (138)
150 cd04045 C2C_Tricalbin-like C2 99.6 3.2E-14 7E-19 133.3 12.0 104 16-130 1-105 (120)
151 cd08686 C2_ABR C2 domain in th 99.6 7.3E-14 1.6E-18 126.8 13.7 93 621-730 1-107 (118)
152 cd08690 C2_Freud-1 C2 domain f 99.5 1.1E-13 2.3E-18 133.6 15.4 125 19-150 5-141 (155)
153 cd08675 C2B_RasGAP C2 domain s 99.5 2.7E-14 6E-19 137.0 11.0 106 18-130 1-122 (137)
154 cd04013 C2_SynGAP_like C2 doma 99.5 7E-14 1.5E-18 133.5 13.5 126 13-149 8-142 (146)
155 cd04052 C2B_Tricalbin-like C2 99.5 3.6E-14 7.8E-19 131.4 11.2 98 641-752 10-110 (111)
156 cd08691 C2_NEDL1-like C2 domai 99.5 9.1E-14 2E-18 132.3 14.2 118 620-748 2-136 (137)
157 cd04040 C2D_Tricalbin-like C2 99.5 6E-14 1.3E-18 131.2 12.3 112 18-140 1-113 (115)
158 cd08402 C2B_Synaptotagmin-1 C2 99.5 2.2E-14 4.7E-19 138.4 9.1 104 616-732 12-123 (136)
159 cd08405 C2B_Synaptotagmin-7 C2 99.5 7.7E-14 1.7E-18 134.6 12.7 103 617-732 13-123 (136)
160 cd04037 C2E_Ferlin C2 domain f 99.5 4.2E-14 9E-19 133.6 10.4 117 620-752 1-120 (124)
161 KOG0696 Serine/threonine prote 99.5 8.5E-15 1.8E-19 154.3 5.4 117 578-733 166-289 (683)
162 cd04052 C2B_Tricalbin-like C2 99.5 6.5E-14 1.4E-18 129.7 10.5 101 33-147 9-110 (111)
163 cd08384 C2B_Rabphilin_Doc2 C2 99.5 2.2E-14 4.8E-19 137.9 7.5 103 617-732 11-121 (133)
164 cd08410 C2B_Synaptotagmin-17 C 99.5 1.8E-13 4E-18 131.4 13.6 104 617-732 12-123 (135)
165 cd08406 C2B_Synaptotagmin-12 C 99.5 5.3E-14 1.2E-18 134.2 9.7 105 15-128 14-123 (136)
166 cd08384 C2B_Rabphilin_Doc2 C2 99.5 2.7E-14 5.8E-19 137.3 7.5 107 14-129 11-122 (133)
167 cd08403 C2B_Synaptotagmin-3-5- 99.5 5.1E-14 1.1E-18 135.4 9.4 103 617-732 12-122 (134)
168 cd08407 C2B_Synaptotagmin-13 C 99.5 6E-14 1.3E-18 133.6 9.5 104 15-127 14-124 (138)
169 PLN03200 cellulose synthase-in 99.5 4.6E-14 1E-18 180.1 11.2 119 616-752 1977-2101(2102)
170 cd00275 C2_PLC_like C2 domain 99.5 3.6E-13 7.9E-18 128.7 14.6 117 620-750 3-127 (128)
171 cd08676 C2A_Munc13-like C2 dom 99.5 1.3E-13 2.8E-18 133.5 11.5 102 450-567 23-153 (153)
172 cd08404 C2B_Synaptotagmin-4 C2 99.5 3.4E-14 7.3E-19 137.0 7.4 107 14-129 13-124 (136)
173 cd04009 C2B_Munc13-like C2 dom 99.5 1.4E-13 3.1E-18 131.9 10.9 95 15-114 15-117 (133)
174 cd04035 C2A_Rabphilin_Doc2 C2 99.5 4.1E-13 9E-18 127.1 13.7 99 618-728 14-121 (123)
175 cd04048 C2A_Copine C2 domain f 99.5 1.6E-13 3.5E-18 129.2 10.8 98 624-732 5-114 (120)
176 cd04037 C2E_Ferlin C2 domain f 99.5 2.1E-13 4.5E-18 128.9 11.5 89 17-113 1-91 (124)
177 cd08402 C2B_Synaptotagmin-1 C2 99.5 1.8E-13 4E-18 131.9 11.0 107 14-129 13-124 (136)
178 cd00276 C2B_Synaptotagmin C2 d 99.5 8.8E-14 1.9E-18 134.1 8.3 104 617-733 12-123 (134)
179 cd08409 C2B_Synaptotagmin-15 C 99.5 1.3E-13 2.8E-18 132.6 9.2 104 617-732 13-124 (137)
180 cd04026 C2_PKC_alpha_gamma C2 99.5 2.2E-13 4.8E-18 130.6 10.6 106 16-130 13-123 (131)
181 cd08408 C2B_Synaptotagmin-14_1 99.5 6.3E-14 1.4E-18 134.5 6.8 107 14-128 13-125 (138)
182 cd08692 C2B_Tac2-N C2 domain s 99.5 1.8E-13 3.9E-18 128.0 9.5 105 14-127 12-122 (135)
183 cd08410 C2B_Synaptotagmin-17 C 99.5 8.4E-14 1.8E-18 133.7 7.5 107 15-129 13-124 (135)
184 PLN03008 Phospholipase D delta 99.5 3E-13 6.6E-18 158.0 13.5 125 15-150 13-181 (868)
185 cd08692 C2B_Tac2-N C2 domain s 99.4 8.1E-13 1.8E-17 123.7 12.6 94 451-551 10-110 (135)
186 cd08405 C2B_Synaptotagmin-7 C2 99.4 1.2E-13 2.7E-18 133.1 7.1 106 14-128 13-123 (136)
187 KOG1326 Membrane-associated pr 99.4 3.6E-13 7.8E-18 156.0 11.5 384 298-717 208-703 (1105)
188 cd00275 C2_PLC_like C2 domain 99.4 1.5E-12 3.2E-17 124.5 14.0 117 16-145 2-127 (128)
189 cd04048 C2A_Copine C2 domain f 99.4 5.3E-13 1.2E-17 125.6 10.6 99 21-128 5-114 (120)
190 cd08408 C2B_Synaptotagmin-14_1 99.4 7.8E-13 1.7E-17 126.9 11.8 104 617-732 13-125 (138)
191 PF06398 Pex24p: Integral pero 99.4 1.6E-12 3.4E-17 146.9 16.2 176 818-1006 1-190 (359)
192 cd08403 C2B_Synaptotagmin-3-5- 99.4 2.8E-13 6.1E-18 130.3 8.1 106 14-128 12-122 (134)
193 cd08409 C2B_Synaptotagmin-15 C 99.4 2.2E-13 4.8E-18 131.0 7.0 106 15-128 14-124 (137)
194 KOG1013 Synaptic vesicle prote 99.4 1.3E-13 2.8E-18 141.8 5.0 226 456-728 94-337 (362)
195 cd08686 C2_ABR C2 domain in th 99.4 1.2E-12 2.7E-17 118.8 10.3 80 18-112 1-92 (118)
196 cd00276 C2B_Synaptotagmin C2 d 99.4 4.3E-13 9.4E-18 129.3 7.4 107 15-130 13-124 (134)
197 cd04035 C2A_Rabphilin_Doc2 C2 99.4 1.7E-12 3.7E-17 122.9 11.4 94 15-114 14-112 (123)
198 KOG1011 Neurotransmitter relea 99.4 4.3E-13 9.3E-18 147.0 6.9 127 16-149 295-427 (1283)
199 cd04047 C2B_Copine C2 domain s 99.4 1.7E-12 3.6E-17 120.3 9.7 94 623-730 4-108 (110)
200 PLN02270 phospholipase D alpha 99.4 3.7E-12 8.1E-17 149.2 14.0 128 618-753 7-150 (808)
201 PLN03200 cellulose synthase-in 99.3 2.3E-12 5E-17 164.8 11.2 119 15-147 1979-2101(2102)
202 KOG1011 Neurotransmitter relea 99.3 1.7E-12 3.7E-17 142.4 6.6 127 618-751 294-424 (1283)
203 cd04047 C2B_Copine C2 domain s 99.3 9.7E-12 2.1E-16 115.2 9.3 90 19-114 3-99 (110)
204 PF00168 C2: C2 domain; Inter 99.3 2.4E-11 5.2E-16 106.7 9.4 82 18-107 1-85 (85)
205 PF00168 C2: C2 domain; Inter 99.2 4E-11 8.8E-16 105.2 9.5 81 621-712 1-85 (85)
206 KOG1013 Synaptic vesicle prote 99.2 2.1E-11 4.5E-16 125.8 4.6 94 15-113 92-190 (362)
207 cd00030 C2 C2 domain. The C2 d 99.1 3.8E-10 8.2E-15 102.2 10.3 99 621-730 1-102 (102)
208 KOG1328 Synaptic vesicle prote 99.1 3.9E-11 8.4E-16 134.0 1.7 138 4-149 105-304 (1103)
209 cd08374 C2F_Ferlin C2 domain s 99.1 8.4E-10 1.8E-14 103.5 10.4 93 621-722 2-125 (133)
210 smart00239 C2 Protein kinase C 99.1 1E-09 2.2E-14 99.5 10.3 91 621-722 2-96 (101)
211 cd00030 C2 C2 domain. The C2 d 99.0 1.2E-09 2.7E-14 98.7 10.3 101 18-126 1-102 (102)
212 PLN02223 phosphoinositide phos 99.0 2.7E-09 5.9E-14 120.7 15.0 121 618-750 408-536 (537)
213 cd08374 C2F_Ferlin C2 domain s 99.0 1.6E-09 3.6E-14 101.5 9.9 92 18-114 2-122 (133)
214 PLN02223 phosphoinositide phos 99.0 3.5E-09 7.6E-14 119.8 14.3 120 14-145 407-536 (537)
215 PLN02952 phosphoinositide phos 99.0 7E-09 1.5E-13 120.2 15.0 120 618-751 469-597 (599)
216 PF11696 DUF3292: Protein of u 98.9 2.8E-08 6E-13 113.6 17.3 74 814-888 82-156 (642)
217 PLN02270 phospholipase D alpha 98.9 8.9E-09 1.9E-13 121.3 13.1 125 15-150 7-152 (808)
218 smart00239 C2 Protein kinase C 98.9 7.7E-09 1.7E-13 93.6 10.1 89 18-114 2-93 (101)
219 PLN02952 phosphoinositide phos 98.9 1.8E-08 3.9E-13 116.9 14.7 120 14-145 468-598 (599)
220 KOG1031 Predicted Ca2+-depende 98.9 5.6E-09 1.2E-13 114.0 9.9 120 619-751 3-136 (1169)
221 PLN02230 phosphoinositide phos 98.9 2E-08 4.3E-13 116.3 13.7 121 618-750 468-597 (598)
222 PLN02222 phosphoinositide phos 98.9 3E-08 6.6E-13 114.6 14.9 121 618-750 451-580 (581)
223 cd08689 C2_fungal_Pkc1p C2 dom 98.8 1.1E-08 2.4E-13 89.3 8.1 86 621-719 1-87 (109)
224 PLN02228 Phosphoinositide phos 98.8 4.2E-08 9.2E-13 113.1 15.0 124 618-753 430-563 (567)
225 PLN02230 phosphoinositide phos 98.8 3E-08 6.4E-13 114.8 13.3 120 14-145 467-597 (598)
226 KOG0169 Phosphoinositide-speci 98.8 2.8E-08 6.1E-13 114.4 12.5 124 11-147 612-745 (746)
227 KOG1327 Copine [Signal transdu 98.8 1.1E-07 2.5E-12 106.6 15.8 182 490-720 41-236 (529)
228 KOG0169 Phosphoinositide-speci 98.8 4.9E-08 1.1E-12 112.6 12.5 121 620-751 617-744 (746)
229 KOG1031 Predicted Ca2+-depende 98.8 2.2E-08 4.8E-13 109.4 9.2 122 16-145 3-135 (1169)
230 PLN02222 phosphoinositide phos 98.7 8.4E-08 1.8E-12 111.0 14.2 120 14-145 450-580 (581)
231 PLN02352 phospholipase D epsil 98.7 5.9E-08 1.3E-12 114.3 12.4 121 617-754 8-133 (758)
232 PLN02228 Phosphoinositide phos 98.7 1.2E-07 2.7E-12 109.3 14.5 123 15-149 430-564 (567)
233 cd08689 C2_fungal_Pkc1p C2 dom 98.7 5.5E-08 1.2E-12 85.1 7.2 84 18-115 1-88 (109)
234 KOG1328 Synaptic vesicle prote 98.6 1.2E-08 2.5E-13 114.7 2.4 96 13-113 944-1047(1103)
235 KOG1264 Phospholipase C [Lipid 98.5 3.9E-07 8.4E-12 103.9 9.8 122 15-149 1064-1192(1267)
236 KOG1264 Phospholipase C [Lipid 98.5 6.8E-07 1.5E-11 102.0 11.4 99 619-732 1065-1171(1267)
237 cd08683 C2_C2cd3 C2 domain fou 98.2 2E-06 4.3E-11 77.6 6.0 110 621-730 1-143 (143)
238 PLN02352 phospholipase D epsil 98.1 1.8E-05 3.9E-10 93.8 11.6 120 15-150 9-134 (758)
239 KOG1327 Copine [Signal transdu 98.0 7.1E-05 1.5E-09 84.6 13.4 179 323-553 41-236 (529)
240 KOG0905 Phosphoinositide 3-kin 97.9 8.9E-06 1.9E-10 96.8 4.6 108 16-129 1524-1636(1639)
241 KOG0905 Phosphoinositide 3-kin 97.7 4.6E-05 1E-09 91.0 6.3 104 618-732 1523-1635(1639)
242 PF12416 DUF3668: Cep120 prote 97.7 0.025 5.4E-07 62.1 26.0 239 457-720 2-295 (340)
243 cd08683 C2_C2cd3 C2 domain fou 97.6 4.6E-05 1E-09 68.9 3.6 109 18-126 1-143 (143)
244 PLN02964 phosphatidylserine de 97.4 0.00024 5.1E-09 84.0 6.8 100 617-734 52-155 (644)
245 cd08684 C2A_Tac2-N C2 domain f 97.0 0.0012 2.5E-08 55.6 4.9 88 458-553 2-94 (103)
246 PLN02964 phosphatidylserine de 97.0 0.0011 2.4E-08 78.5 6.7 88 14-116 52-140 (644)
247 KOG3837 Uncharacterized conser 97.0 0.0011 2.3E-08 71.4 5.5 118 620-751 368-503 (523)
248 KOG2060 Rab3 effector RIM1 and 96.8 0.00075 1.6E-08 72.1 3.1 108 616-733 266-380 (405)
249 cd08684 C2A_Tac2-N C2 domain f 96.7 0.0013 2.8E-08 55.3 3.2 97 19-125 2-102 (103)
250 PF12416 DUF3668: Cep120 prote 96.7 0.018 3.8E-07 63.3 12.3 121 621-754 2-135 (340)
251 KOG3837 Uncharacterized conser 96.6 0.0014 3.1E-08 70.5 3.2 129 14-149 365-506 (523)
252 KOG2060 Rab3 effector RIM1 and 96.3 0.0024 5.3E-08 68.3 2.8 108 14-130 267-381 (405)
253 PF15627 CEP76-C2: CEP76 C2 do 96.0 0.068 1.5E-06 51.5 10.8 131 14-149 7-153 (156)
254 KOG1265 Phospholipase C [Lipid 95.7 0.047 1E-06 64.6 9.6 95 456-571 704-807 (1189)
255 PF08372 PRT_C: Plant phosphor 95.6 0.047 1E-06 52.6 7.9 50 822-871 61-110 (156)
256 KOG1265 Phospholipase C [Lipid 95.3 0.073 1.6E-06 63.0 9.5 108 4-130 691-807 (1189)
257 cd08398 C2_PI3K_class_I_alpha 94.8 0.2 4.3E-06 49.1 9.7 92 16-112 8-105 (158)
258 cd08398 C2_PI3K_class_I_alpha 94.8 0.15 3.3E-06 49.9 8.8 84 457-550 10-105 (158)
259 PF15627 CEP76-C2: CEP76 C2 do 94.7 0.29 6.2E-06 47.2 10.1 131 451-591 5-151 (156)
260 KOG1452 Predicted Rho GTPase-a 94.5 0.064 1.4E-06 56.0 5.8 119 616-753 48-169 (442)
261 cd08693 C2_PI3K_class_I_beta_d 94.3 0.29 6.3E-06 48.8 9.8 74 16-91 8-87 (173)
262 KOG1452 Predicted Rho GTPase-a 94.2 0.073 1.6E-06 55.6 5.2 119 14-149 49-170 (442)
263 cd08397 C2_PI3K_class_III C2 d 93.2 0.36 7.8E-06 47.4 8.1 73 35-112 28-106 (159)
264 cd08693 C2_PI3K_class_I_beta_d 93.1 0.42 9E-06 47.8 8.5 86 457-550 10-119 (173)
265 PF10358 NT-C2: N-terminal C2 92.8 1.9 4.2E-05 41.5 12.6 114 620-752 8-136 (143)
266 cd08380 C2_PI3K_like C2 domain 92.6 0.67 1.4E-05 45.6 9.2 91 16-112 8-106 (156)
267 KOG1329 Phospholipase D1 [Lipi 91.7 0.11 2.3E-06 62.6 2.7 105 642-753 136-242 (887)
268 cd08397 C2_PI3K_class_III C2 d 91.7 0.73 1.6E-05 45.3 8.0 70 641-717 27-106 (159)
269 PF10358 NT-C2: N-terminal C2 91.6 3.5 7.5E-05 39.7 12.8 124 14-149 5-138 (143)
270 PF02453 Reticulon: Reticulon; 91.4 0.028 6.1E-07 56.2 -2.2 50 950-999 90-139 (169)
271 cd08687 C2_PKN-like C2 domain 91.0 1.8 3.9E-05 37.4 8.4 85 35-145 7-92 (98)
272 cd08380 C2_PI3K_like C2 domain 90.9 1.1 2.5E-05 43.9 8.7 91 457-551 10-107 (156)
273 cd04012 C2A_PI3K_class_II C2 d 90.3 1.2 2.6E-05 44.4 8.3 99 14-112 6-118 (171)
274 cd08399 C2_PI3K_class_I_gamma 90.0 1.6 3.5E-05 43.5 8.8 69 457-532 12-88 (178)
275 cd08399 C2_PI3K_class_I_gamma 89.9 1.9 4E-05 43.1 9.1 75 16-91 10-89 (178)
276 cd08687 C2_PKN-like C2 domain 89.4 3.3 7.2E-05 35.8 8.8 86 641-750 6-92 (98)
277 cd04012 C2A_PI3K_class_II C2 d 88.8 1.6 3.4E-05 43.6 7.9 93 456-551 9-119 (171)
278 smart00142 PI3K_C2 Phosphoinos 87.1 3.7 8E-05 36.9 8.4 74 18-91 13-92 (100)
279 PF00792 PI3K_C2: Phosphoinosi 84.7 3.5 7.5E-05 39.8 7.5 57 51-112 23-84 (142)
280 cd08695 C2_Dock-B C2 domains f 84.2 15 0.00033 36.9 11.8 58 49-110 54-111 (189)
281 PF00792 PI3K_C2: Phosphoinosi 79.1 19 0.00041 34.6 10.4 54 658-718 23-85 (142)
282 PF08151 FerI: FerI (NUC094) d 78.7 4.3 9.3E-05 33.8 4.8 51 379-432 1-51 (72)
283 smart00142 PI3K_C2 Phosphoinos 78.5 8.2 0.00018 34.6 7.1 70 457-532 13-91 (100)
284 PF06398 Pex24p: Integral pero 75.7 6.4 0.00014 44.6 7.0 44 946-989 15-61 (359)
285 cd05137 RasGAP_CLA2_BUD2 CLA2/ 72.8 5.8 0.00013 45.1 5.6 48 707-756 1-49 (395)
286 PF14429 DOCK-C2: C2 domain in 71.3 14 0.00031 37.3 7.6 60 50-112 61-120 (184)
287 cd08694 C2_Dock-A C2 domains f 71.0 26 0.00056 35.4 9.0 59 655-716 53-114 (196)
288 PTZ00447 apical membrane antig 70.9 29 0.00062 37.5 9.6 114 454-588 57-171 (508)
289 PF15625 CC2D2AN-C2: CC2D2A N- 70.8 23 0.00051 35.1 8.8 69 643-719 36-107 (168)
290 cd08694 C2_Dock-A C2 domains f 70.2 27 0.00058 35.3 8.9 42 49-91 54-95 (196)
291 PF14429 DOCK-C2: C2 domain in 69.2 19 0.0004 36.5 7.9 59 655-717 59-120 (184)
292 PF11696 DUF3292: Protein of u 68.3 12 0.00026 44.5 6.9 66 929-1000 90-155 (642)
293 PF11618 DUF3250: Protein of u 66.5 29 0.00062 31.6 7.6 93 647-751 2-105 (107)
294 PF15625 CC2D2AN-C2: CC2D2A N- 64.6 44 0.00096 33.2 9.3 72 478-553 36-108 (168)
295 PTZ00447 apical membrane antig 63.0 90 0.0019 33.9 11.3 109 620-749 59-171 (508)
296 PF06219 DUF1005: Protein of u 62.9 84 0.0018 35.3 11.5 109 643-753 35-169 (460)
297 KOG3385 V-SNARE [Intracellular 60.7 24 0.00052 31.9 5.7 18 928-945 37-54 (118)
298 KOG0694 Serine/threonine prote 56.2 3.2 7E-05 49.1 -0.5 98 35-149 26-124 (694)
299 KOG2419 Phosphatidylserine dec 55.0 3.3 7.1E-05 47.9 -0.7 175 458-693 283-462 (975)
300 PF06219 DUF1005: Protein of u 54.3 1.5E+02 0.0033 33.4 11.7 109 311-420 35-164 (460)
301 KOG3543 Ca2+-dependent activat 52.0 65 0.0014 37.6 8.7 99 620-731 342-440 (1218)
302 cd08695 C2_Dock-B C2 domains f 52.0 36 0.00079 34.3 6.2 41 323-368 53-93 (189)
303 PF07162 B9-C2: Ciliary basal 51.0 1.4E+02 0.003 29.6 10.3 83 18-111 4-102 (168)
304 PF11618 DUF3250: Protein of u 49.6 40 0.00087 30.6 5.5 97 40-145 2-104 (107)
305 cd08697 C2_Dock-D C2 domains f 48.6 87 0.0019 31.6 8.3 63 655-717 56-123 (185)
306 PF04842 DUF639: Plant protein 47.8 27 0.00058 41.8 5.2 59 947-1005 493-554 (683)
307 cd08696 C2_Dock-C C2 domains f 46.3 79 0.0017 31.7 7.5 62 655-717 54-118 (179)
308 cd08679 C2_DOCK180_related C2 43.2 60 0.0013 32.6 6.4 61 50-111 54-114 (178)
309 cd08696 C2_Dock-C C2 domains f 38.8 79 0.0017 31.7 6.2 42 49-91 55-96 (179)
310 PF00957 Synaptobrevin: Synapt 38.1 1E+02 0.0022 26.8 6.2 32 943-974 40-71 (89)
311 cd08679 C2_DOCK180_related C2 37.2 92 0.002 31.2 6.6 57 659-717 56-115 (178)
312 PF08151 FerI: FerI (NUC094) d 37.0 47 0.001 27.7 3.6 44 546-592 1-44 (72)
313 KOG1792 Reticulon [Intracellul 36.4 2.8E+02 0.0061 29.1 10.0 37 952-988 132-168 (230)
314 KOG3543 Ca2+-dependent activat 35.0 2.2E+02 0.0048 33.5 9.5 99 457-571 343-443 (1218)
315 KOG0694 Serine/threonine prote 34.9 13 0.00028 44.3 -0.0 52 644-696 28-80 (694)
316 KOG0860 Synaptobrevin/VAMP-lik 33.3 1.2E+02 0.0027 27.7 5.8 33 944-976 67-99 (116)
317 PF14909 SPATA6: Spermatogenes 33.2 3.8E+02 0.0083 25.6 9.3 89 17-114 3-100 (140)
318 KOG1329 Phospholipase D1 [Lipi 33.1 46 0.00099 41.1 4.1 103 37-149 138-243 (887)
319 cd08697 C2_Dock-D C2 domains f 32.8 1.3E+02 0.0028 30.3 6.7 42 48-90 56-97 (185)
320 KOG2419 Phosphatidylserine dec 32.4 4.1 9E-05 47.1 -4.3 61 618-680 279-340 (975)
321 cd05137 RasGAP_CLA2_BUD2 CLA2/ 31.9 46 0.00099 38.0 3.8 45 103-148 2-46 (395)
322 PF14924 DUF4497: Protein of u 30.2 1.3E+02 0.0028 27.6 5.8 64 682-752 28-105 (112)
323 KOG0904 Phosphatidylinositol 3 30.0 96 0.0021 38.2 5.9 71 16-89 343-421 (1076)
324 KOG4269 Rac GTPase-activating 28.1 28 0.0006 42.5 1.2 90 617-716 757-854 (1112)
325 PF10409 PTEN_C2: C2 domain of 28.0 3.6E+02 0.0078 25.3 8.8 91 17-112 5-96 (134)
326 PF07162 B9-C2: Ciliary basal 28.0 5.4E+02 0.012 25.4 10.3 77 623-716 6-102 (168)
327 PF14909 SPATA6: Spermatogenes 26.0 3.3E+02 0.0071 26.0 7.6 86 457-553 4-101 (140)
328 PF01544 CorA: CorA-like Mg2+ 24.7 1.6E+02 0.0034 31.9 6.4 66 932-1003 194-259 (292)
329 PF14963 CAML: Calcium signal- 23.8 2.8E+02 0.006 29.0 7.2 34 860-893 170-203 (263)
330 KOG4027 Uncharacterized conser 23.8 3.7E+02 0.008 26.1 7.4 67 643-716 25-109 (187)
331 PF08653 DASH_Dam1: DASH compl 22.4 3.7E+02 0.008 21.5 6.0 47 932-981 3-49 (58)
332 TIGR02302 aProt_lowcomp conser 20.6 2.4E+02 0.0052 35.6 7.3 25 964-988 133-157 (851)
333 KOG0904 Phosphatidylinositol 3 20.2 3E+02 0.0064 34.3 7.5 69 457-531 345-421 (1076)
No 1
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=100.00 E-value=6.5e-35 Score=339.67 Aligned_cols=543 Identities=18% Similarity=0.250 Sum_probs=382.6
Q ss_pred CCcccEEEEEEEEecCCCCCC--CCCCCCcEEEEEECC-eEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEe
Q 042999 12 QFTVRKLVVEVVDARDLLPKD--GQGSSSPYVIADFDG-QRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYN 88 (1006)
Q Consensus 12 ~~~~~~L~V~v~~a~~L~~~~--~~g~~dPyv~v~~~~-~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d 88 (1006)
....|+|.|+|.+|++|...+ .++..|||+.+.+.+ ...||+++++++||+|||+|.+.+... ++.|.++|||
T Consensus 432 ~~aIGVv~vkI~sa~~lk~~d~~i~~~vDpyit~~~~~r~~gkT~v~~nt~nPvwNEt~Yi~lns~----~d~L~LslyD 507 (1227)
T COG5038 432 GTAIGVVEVKIKSAEGLKKSDSTINGTVDPYITVTFSDRVIGKTRVKKNTLNPVWNETFYILLNSF----TDPLNLSLYD 507 (1227)
T ss_pred CCeeEEEEEEEeeccCcccccccccCCCCceEEEEeccccCCccceeeccCCccccceEEEEeccc----CCceeEEEEe
Confidence 456899999999999998887 578999999999854 447999999999999999999999876 5689999999
Q ss_pred CCCCCCCCCCCCceeEEEEEeCeeeeeeCCceeEEEEceecCCceeeeEEEEEEEEEEecCcccccCCCCCCCCCCCCCC
Q 042999 89 DKRYCNGSGRKNHFLGRVKLCGSQFARRGDEGLVYFPLEKKSVFSWIRGEIGLRIYYYDELSEEEHQHPPPPQDEPPPPQ 168 (1006)
Q Consensus 89 ~d~~~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (1006)
.+.. ++|+.+|+..++|..+...+...+.-+.+... .+..|++...+.|++....
T Consensus 508 ~n~~-----~sd~vvG~~~l~L~~L~~~~~~~ne~~e~~~~---~k~vGrL~yDl~ffp~~e~----------------- 562 (1227)
T COG5038 508 FNSF-----KSDKVVGSTQLDLALLHQNPVKKNELYEFLRN---TKNVGRLTYDLRFFPVIED----------------- 562 (1227)
T ss_pred cccc-----CCcceeeeEEechHHhhhccccccceeeeecc---CccceEEEEeeeeecccCC-----------------
Confidence 8888 79999999999999976665555545544432 2448999999999998631
Q ss_pred CCCCCCCcccccCCcccccCCCCccccCCCCccccCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCchhhhhh
Q 042999 169 PPQQQPGVCVVEEGRVFEVPGGHVEVCHPVPEIYHGQPPPQAPIIEESQPHGVHVQPEPVQIPPHDEPIPTAVPAAEIRK 248 (1006)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 248 (1006)
+... .+. +++ .
T Consensus 563 ---k~~~---------------------~~s--------------~e~--~----------------------------- 573 (1227)
T COG5038 563 ---KKEL---------------------KGS--------------VEP--L----------------------------- 573 (1227)
T ss_pred ---cccc---------------------ccc--------------cCC--c-----------------------------
Confidence 1000 000 000 0
Q ss_pred cccccccccccccCCCCCCCCccccCCCCCCCCCCCCCCCcccccccceEEEEEEEeeCCCCC---C-CcEEEEEECCe-
Q 042999 249 MQSGCAERVNVLKRPNGDYSPKVINSSKPNGEVPTERIHPYDLVEPMMYLFVKIRKARGLVPN---E-APYVKIRTSSH- 323 (1006)
Q Consensus 249 ~~~~~~~~~~~~~~p~~~~~~~~~~p~~~~~~~~~~~~~~~~l~~~~~~l~V~v~~a~~l~~~---~-dpyv~v~~~~~- 323 (1006)
+ +...| .+.+.+.+.++|... - .-++++++..+
T Consensus 574 --------------e-----------d~n~G-----------------I~k~tl~~~~~l~~~~~~~~~~~a~l~~~~ke 611 (1227)
T COG5038 574 --------------E-----------DSNTG-----------------ILKVTLREVKALDELSSKKDNKSAELYTNAKE 611 (1227)
T ss_pred --------------c-----------cCCcc-----------------eeEEEeeccccccCccccccceeEEEEecceE
Confidence 0 00001 133555555555432 2 33388888774
Q ss_pred eeeeeEeeccCCCCCCCCeeceEEEEeccCCCCCCCEEEEEEEcCCCCCccEEEEEeCCcCCCCCCCCCCCcceeEEccc
Q 042999 324 YKKSKLASYRACDPHDSPEWNQVFALFHNKNDSVSATLEITVWDSPTENFLGGVCFDLSDVPVRDPPDSPLAPQWYRLEG 403 (1006)
Q Consensus 324 ~~~T~~~~~~~~~~~~nP~wne~f~f~~~~~~~~~~~l~i~V~D~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~ 403 (1006)
.+.|+.+ +.+.+|.||+.+...+.+.. ...+.+.++|....+.+|....+|.++..+. ...-+||++..
T Consensus 612 V~st~~~-----k~t~~~~wn~~~~~~v~~~~--ns~~~~~~~d~~~g~~i~~~~~~l~~li~~t----~dt~~~f~~~~ 680 (1227)
T COG5038 612 VYSTGKL-----KFTNHPSWNLQYNVLVTDRK--NSSIKVVTFDVQSGKVIATEGSTLPDLIDRT----LDTFLVFPLRN 680 (1227)
T ss_pred Eecccee-----eeccCCceeeecceEeccCc--ceeEEEEecccccCceeccccccchHhhhcc----ccceEEEEcCC
Confidence 5777999 99999999999999999988 8899999999767888999989998887752 22248999996
Q ss_pred CCCCCCcceeeEEEEEEEeecCCCCcCccccCCCCCCccccccccccCCceEEEEEEEEEeecCcccCCCCCCCCCCcEE
Q 042999 404 EASDQNNRVSGDIQLAVWIGTQADEAFPEAWSSDAPYVTHTRSKVYQSPKLWYLRVTVMEAQDLCIAHNLPPLTAPEIRV 483 (1006)
Q Consensus 404 ~~~~~~~~~~g~l~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~p~~~~L~V~v~~a~~L~~~~~~d~~~~~dpyv 483 (1006)
++ |++.++. .|..-+.+..+ .++-+....++.++|.|..|.||... ..++.+|||+
T Consensus 681 ~k----g~I~~t~---~W~Pi~~~~~~--------------~s~~~~~~pIg~irv~v~~andl~n~---i~g~~~dPya 736 (1227)
T COG5038 681 PK----GRIFITN---YWKPIYNAGGS--------------SSKTVYDTPIGAIRVSVRKANDLRNE---IPGGKSDPYA 736 (1227)
T ss_pred Cc----ceEEEEe---ccceeeccccc--------------cceeeecCccceEEEEeehhhccccc---ccCcccccce
Confidence 64 3444443 34222222111 12334566688899999999999843 7889999999
Q ss_pred EEEECC-ccceeeeeecCCCCCCceecceeeeeeccCCCCcEEEEEEECCCCccccceeEEEEEeccccccccccCcc--
Q 042999 484 KAQLAL-QSARTRRGSMNNHSSSFHWHEDVFFVAAEPFEDSLILLVEDRTAKDAAAVILGHAVVPVSSIDQRIDERHV-- 560 (1006)
Q Consensus 484 ~v~lg~-~~~kT~~~~~~~~t~nP~w~e~~~f~v~~~~~~~L~v~V~D~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~-- 560 (1006)
+|.+++ .++||-... .+.||.|++..+..+..+. +.|.++++|....+ .|..+|++.++++++.++.++...
T Consensus 737 ~v~~n~~~k~rti~~~---~~~npiw~~i~Yv~v~sk~-~r~~l~~~~~~~sg-ddr~lg~~~i~vsn~~~k~~~s~~~~ 811 (1227)
T COG5038 737 TVLVNNLVKYRTIYGS---STLNPIWNEILYVPVTSKN-QRLTLECMDYEESG-DDRNLGEVNINVSNVSKKDEDSALME 811 (1227)
T ss_pred EEEecceeEEEEeccc---CccccceeeeEEEEecCCc-cEEeeeeecchhcc-ccceeceeeeeeeeeeecCCCcceEE
Confidence 999987 677777654 8999999998888777665 45899999988655 689999999999998874222100
Q ss_pred ------cceEEeCcCCCCCCCccceeeeEEEEEee---------------------------------------------
Q 042999 561 ------ASKWFPLEGSCGRGCARSYCGRIQLKLCL--------------------------------------------- 589 (1006)
Q Consensus 561 ------~~~w~~L~~~~~~~~~~~~~G~l~l~v~l--------------------------------------------- 589 (1006)
...-..+.+ ....|.+.+.+.+
T Consensus 812 ~i~g~~~t~~l~~~~-------~~~~~tit~~~~f~p~~i~~s~ee~~~~~k~~~e~~~~~~~~~~l~ek~~~~~D~~~~ 884 (1227)
T COG5038 812 TIDGAEETGKLSLTG-------KKVKGTITYKCRFYPAVIVLSLEEVRYVDKVSSEKRKSEKRKSALDEKTISLVDKEDS 884 (1227)
T ss_pred eecCccccccccccc-------CCcceeEEEEEEEEeecccCChHHhcchhhhhhHHHHhhhhhcccCccccchhccccc
Confidence 000001100 0111111111111
Q ss_pred -----------------------------------------------------eC-Ccccccccc---------------
Q 042999 590 -----------------------------------------------------EG-GYHVLDEAA--------------- 600 (1006)
Q Consensus 590 -----------------------------------------------------~~-~~~~~d~~~--------------- 600 (1006)
+. .|+..-.+.
T Consensus 885 ~~e~~~v~~~~d~~~~k~k~~lne~lq~~sgv~~i~i~~g~l~~~~~~l~~f~Dd~~~~~i~s~~~~t~~~~~~~~g~~~ 964 (1227)
T COG5038 885 VEESIEVEELTDMYSLKPKLDLNEALQYKSGVLGIQILSGELPDPGQYLQIFFDDASHPQIVSSKAPTRGERNGESGDTF 964 (1227)
T ss_pred hhcceeeccccchhhcchhhhhhhhhcccCCceEEEEEEeecCCcceEEEEEecCCCCceeeccCCcccccccchhhhhh
Confidence 10 000000000
Q ss_pred ----------------------ccCCC------------CCcc-------ccc----cCC------------CCcEEEEE
Q 042999 601 ----------------------HVCSD------------FRPT-------AKQ----LWK------------PPVGILEL 623 (1006)
Q Consensus 601 ----------------------~~~~~------------~~p~-------~~~----l~~------------~~~g~L~v 623 (1006)
..++. .+|. ++. .|. .+.|-|+|
T Consensus 965 ireL~~s~~tfrv~K~a~~~dk~v~e~t~~t~~lvs~~~~kp~~ln~~g~~~~~v~~~~tPv~~~l~~~emv~nsG~l~I 1044 (1227)
T COG5038 965 IRELEYSETTFRVTKNAKKSDKVVCEVTLPTLDLVSNAYEKPSSLNFPGSAKVLVQVSYTPVPVKLPPVEMVENSGYLTI 1044 (1227)
T ss_pred hhhhccceEEEEeccCCcccCceeeecccchhHHHHHhhCCCcEEecCCCceEEEEEEEeecccccCcceeecccCcEEE
Confidence 00000 0000 000 000 24789999
Q ss_pred EEeeccCCccCccCCCCCCCCCeEEEEEECCE-EEEeecccCCCCCeeccEEEEEEeC-CCcEEEEEEEECCCCCcCCCC
Q 042999 624 GILGARGLLPMKTKNGGKGSTDAYCVAKYGKK-WVRTRTITDCFDPRWNEQYTWQVYD-PCTVLTVGVFDNWRMFADASE 701 (1006)
Q Consensus 624 ~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~~~-~~rT~~~~~~~nP~wne~~~~~v~~-~~~~l~i~v~d~~~~~~~~~~ 701 (1006)
.+..|.||++.| . +|.+||||++.++++ .++|+++++|+||+|||++.++|.. ..+.++|.|+|||...
T Consensus 1045 ~~~~~~nl~~~d---~-ng~sDpfv~~~ln~k~vyktkv~KktlNPvwNEe~~i~v~~r~~D~~~i~v~Dwd~~~----- 1115 (1227)
T COG5038 1045 MLRSGENLPSSD---E-NGYSDPFVKLFLNEKSVYKTKVVKKTLNPVWNEEFTIEVLNRVKDVLTINVNDWDSGE----- 1115 (1227)
T ss_pred EEeccCCCcccc---c-CCCCCceEEEEecceecccccchhccCCCCccccceEeeeccccceEEEEEeecccCC-----
Confidence 999999999855 4 899999999999877 7899999999999999999999985 6679999999999866
Q ss_pred CCCCceeEEEEEEcccccCCceEeeEEEeeeeccCCcccccEEEEEEEEecCC
Q 042999 702 ERPDYRIGKIRIRVSTLENNKVYTTSYPLLVLLRTGLKKMGEIELAVRFVCPS 754 (1006)
Q Consensus 702 ~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~l~l~~~~~~~~ 754 (1006)
+++.||.+.|+|+.+..+..+....+|.++. .+ ...|.++..+.|....
T Consensus 1116 --knd~lg~~~idL~~l~~~~~~n~~i~ldgk~-~~-~~~g~~~~~~~~r~~~ 1164 (1227)
T COG5038 1116 --KNDLLGTAEIDLSKLEPGGTTNSNIPLDGKT-FI-VLDGTLHPGFNFRSKY 1164 (1227)
T ss_pred --CccccccccccHhhcCcCCccceeeeccCcc-eE-ecccEeecceecchhh
Confidence 8999999999999999999888888886643 22 2358888888776543
No 2
>PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins. It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO).
Probab=100.00 E-value=5.3e-34 Score=268.08 Aligned_cols=131 Identities=64% Similarity=1.142 Sum_probs=128.8
Q ss_pred hHHHHHHHHHHhhhccccCCCCCCCCCCccccCCCCCCCCCCccccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 042999 876 VPTGFLYVVLIGVWYYRFRPKIPSGMDTRLSQAETVDPDELDEEFDTIPSSKPPEIIRMRYDRLRMLAARVQTVLGDFAT 955 (1006)
Q Consensus 876 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ee~~~~~~~~~~~~~~~~~~~l~~~~~~vQ~~l~~~a~ 955 (1006)
+|+++++++++++|||+++++.|+|+|.++|+++++++||+|||+|++|++++++++++||+++|+++++|||++|++|+
T Consensus 1 lp~~~l~~~~~~~w~yr~rpr~p~~~d~~ls~~~~~~~deldEEfD~~ps~~~~~~lr~Rydrlr~va~rvQ~vlgd~At 80 (156)
T PF08372_consen 1 LPTVFLYLFLIGLWNYRFRPRHPPHMDTKLSHADSAHPDELDEEFDTFPSSRPPDSLRMRYDRLRSVAGRVQNVLGDVAT 80 (156)
T ss_pred CchHHHHHHHHHHhccccCCCCCCCCCccccccccCCcchhhhhhcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHhHhhhccccCchhHHHHHHHHHHHHHHhhhhhhHHHHHHHhhhhccCC
Q 042999 956 QGERVQALVSWRDPRATKLFIGVCTVITLVLYVVPPKMVAVALGFYYLRHP 1006 (1006)
Q Consensus 956 ~~e~i~~~~~w~~p~~t~~~~~~l~~~~~~l~~iP~r~i~l~~~~~~~~hP 1006 (1006)
++||++|+|+|+||++|++++++|+++++++|++|+|+++++||+|+||||
T Consensus 81 ~gERl~allsWrdP~aT~lf~~~clv~avvly~vP~r~l~l~~gly~~r~P 131 (156)
T PF08372_consen 81 QGERLQALLSWRDPRATALFVVFCLVAAVVLYFVPFRVLVLIWGLYKLRHP 131 (156)
T ss_pred HHHHHHHhhccCCccHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCc
Confidence 999999999999999999999999999999999999999999999999998
No 3
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=99.91 E-value=6.4e-22 Score=231.88 Aligned_cols=390 Identities=18% Similarity=0.240 Sum_probs=278.5
Q ss_pred cceEEEEEEEeeCCCC-------CCCcEEEEEECC-eeeeeeEeeccCCCCCCCCeeceEEEEeccCCCCCCCEEEEEEE
Q 042999 295 MMYLFVKIRKARGLVP-------NEAPYVKIRTSS-HYKKSKLASYRACDPHDSPEWNQVFALFHNKNDSVSATLEITVW 366 (1006)
Q Consensus 295 ~~~l~V~v~~a~~l~~-------~~dpyv~v~~~~-~~~~T~~~~~~~~~~~~nP~wne~f~f~~~~~~~~~~~l~i~V~ 366 (1006)
...+.|++.+|++|.. ..|||+.+.+.+ ...+|+++ +++.||+|||+|+.++.... ++|.++||
T Consensus 435 IGVv~vkI~sa~~lk~~d~~i~~~vDpyit~~~~~r~~gkT~v~-----~nt~nPvwNEt~Yi~lns~~---d~L~Lsly 506 (1227)
T COG5038 435 IGVVEVKIKSAEGLKKSDSTINGTVDPYITVTFSDRVIGKTRVK-----KNTLNPVWNETFYILLNSFT---DPLNLSLY 506 (1227)
T ss_pred eEEEEEEEeeccCcccccccccCCCCceEEEEeccccCCcccee-----eccCCccccceEEEEecccC---CceeEEEE
Confidence 4567899999999864 349999999877 45699999 99999999999999998774 99999999
Q ss_pred cCC---CCCccEEEEEeCCcCCCCCCCCCCCcceeEEcccCCCCCCcceeeEEEEEEE-eecCCCCcCccccCCCCCCcc
Q 042999 367 DSP---TENFLGGVCFDLSDVPVRDPPDSPLAPQWYRLEGEASDQNNRVSGDIQLAVW-IGTQADEAFPEAWSSDAPYVT 442 (1006)
Q Consensus 367 D~~---~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~~~g~l~~~~~-~~~~~d~~~~~~~~~~~~~~~ 442 (1006)
|++ +|+.+|++.++|+.+..+....+. -+.+... .+..|+|.+.+. +....+........
T Consensus 507 D~n~~~sd~vvG~~~l~L~~L~~~~~~~ne----~~e~~~~-----~k~vGrL~yDl~ffp~~e~k~~~~~s~------- 570 (1227)
T COG5038 507 DFNSFKSDKVVGSTQLDLALLHQNPVKKNE----LYEFLRN-----TKNVGRLTYDLRFFPVIEDKKELKGSV------- 570 (1227)
T ss_pred eccccCCcceeeeEEechHHhhhccccccc----eeeeecc-----CccceEEEEeeeeecccCCcccccccc-------
Confidence 965 599999999999988876322222 2233222 235577766553 22222211110000
Q ss_pred ccccccccCCceEEEEEEEEEeecCcccCCCCCCCCCCcEEEEEECC-ccceeeeeecCCCCCCceecceeeeeeccCCC
Q 042999 443 HTRSKVYQSPKLWYLRVTVMEAQDLCIAHNLPPLTAPEIRVKAQLAL-QSARTRRGSMNNHSSSFHWHEDVFFVAAEPFE 521 (1006)
Q Consensus 443 ~~~~~~~~~p~~~~L~V~v~~a~~L~~~~~~d~~~~~dpyv~v~lg~-~~~kT~~~~~~~~t~nP~w~e~~~f~v~~~~~ 521 (1006)
........+.+.+++.++++|... ......-++++++.. +++.|++.+ .+.+|.||+++.-.+.+-..
T Consensus 571 ----e~~ed~n~GI~k~tl~~~~~l~~~----~~~~~~~~a~l~~~~keV~st~~~k---~t~~~~wn~~~~~~v~~~~n 639 (1227)
T COG5038 571 ----EPLEDSNTGILKVTLREVKALDEL----SSKKDNKSAELYTNAKEVYSTGKLK---FTNHPSWNLQYNVLVTDRKN 639 (1227)
T ss_pred ----CCcccCCcceeEEEeeccccccCc----cccccceeEEEEecceEEeccceee---eccCCceeeecceEeccCcc
Confidence 000111246799999999999842 222223337788865 666667776 89999999999998888878
Q ss_pred CcEEEEEEECCCCccccceeEEEEEeccccccccccCcccceEEeCcCCCCCCCccceeeeEEEEEeeeCCccccccccc
Q 042999 522 DSLILLVEDRTAKDAAAVILGHAVVPVSSIDQRIDERHVASKWFPLEGSCGRGCARSYCGRIQLKLCLEGGYHVLDEAAH 601 (1006)
Q Consensus 522 ~~L~v~V~D~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L~~~~~~~~~~~~~G~l~l~v~l~~~~~~~d~~~~ 601 (1006)
..+.+.+.|.. . .+.||....+|.++.... .....||++..+ .|+|.+..+...-|...+.
T Consensus 640 s~~~~~~~d~~-~---g~~i~~~~~~l~~li~~t---~dt~~~f~~~~~---------kg~I~~t~~W~Pi~~~~~~--- 700 (1227)
T COG5038 640 SSIKVVTFDVQ-S---GKVIATEGSTLPDLIDRT---LDTFLVFPLRNP---------KGRIFITNYWKPIYNAGGS--- 700 (1227)
T ss_pred eeEEEEecccc-c---CceeccccccchHhhhcc---ccceEEEEcCCC---------cceEEEEeccceeeccccc---
Confidence 88999999975 2 578999999998877543 345679999854 6899888765543321110
Q ss_pred cCCCCCccccccCCCCcEEEEEEEeeccCCccCccCCCCCCCCCeEEEEEECC-EEEEeecccCCCCCeeccEEEEEEeC
Q 042999 602 VCSDFRPTAKQLWKPPVGILELGILGARGLLPMKTKNGGKGSTDAYCVAKYGK-KWVRTRTITDCFDPRWNEQYTWQVYD 680 (1006)
Q Consensus 602 ~~~~~~p~~~~l~~~~~g~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~~-~~~rT~~~~~~~nP~wne~~~~~v~~ 680 (1006)
.+......++|.++|.|..|.+|.. ... .|++|||+.+.+++ ..+||-....++||.||+....++..
T Consensus 701 -------~s~~~~~~pIg~irv~v~~andl~n---~i~-g~~~dPya~v~~n~~~k~rti~~~~~~npiw~~i~Yv~v~s 769 (1227)
T COG5038 701 -------SSKTVYDTPIGAIRVSVRKANDLRN---EIP-GGKSDPYATVLVNNLVKYRTIYGSSTLNPIWNEILYVPVTS 769 (1227)
T ss_pred -------cceeeecCccceEEEEeehhhcccc---ccc-CcccccceEEEecceeEEEEecccCccccceeeeEEEEecC
Confidence 1112234689999999999999974 345 88999999999986 46799888999999999999999999
Q ss_pred CCcEEEEEEEECCCCCcCCCCCCCCceeEEEEEEcccccC----CceEeeE---EEeeeeccCCcccccEEEEEEEEecC
Q 042999 681 PCTVLTVGVFDNWRMFADASEERPDYRIGKIRIRVSTLEN----NKVYTTS---YPLLVLLRTGLKKMGEIELAVRFVCP 753 (1006)
Q Consensus 681 ~~~~l~i~v~d~~~~~~~~~~~~~d~~lG~~~i~l~~l~~----~~~~~~~---~~L~~~~~~g~~~~G~l~l~~~~~~~ 753 (1006)
+.+.+.+.++|....+ .|..||.+.|+++++.. +.....- -........|.+..|++++..+|-+.
T Consensus 770 k~~r~~l~~~~~~~sg-------ddr~lg~~~i~vsn~~~k~~~s~~~~~i~g~~~t~~l~~~~~~~~~tit~~~~f~p~ 842 (1227)
T COG5038 770 KNQRLTLECMDYEESG-------DDRNLGEVNINVSNVSKKDEDSALMETIDGAEETGKLSLTGKKVKGTITYKCRFYPA 842 (1227)
T ss_pred CccEEeeeeecchhcc-------ccceeceeeeeeeeeeecCCCcceEEeecCcccccccccccCCcceeEEEEEEEEee
Confidence 9999999999999888 89999999999998865 2111100 00000111233345999999999875
Q ss_pred CCC
Q 042999 754 SML 756 (1006)
Q Consensus 754 ~~~ 756 (1006)
.+.
T Consensus 843 ~i~ 845 (1227)
T COG5038 843 VIV 845 (1227)
T ss_pred ccc
Confidence 433
No 4
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=1e-22 Score=229.82 Aligned_cols=211 Identities=29% Similarity=0.424 Sum_probs=171.2
Q ss_pred ccEEEEEEEEecCCCCCCCCCCCCcEEEEEEC---CeEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEeCCC
Q 042999 15 VRKLVVEVVDARDLLPKDGQGSSSPYVIADFD---GQRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYNDKR 91 (1006)
Q Consensus 15 ~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~---~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~d~ 91 (1006)
...|.|+|++|++|+.++..|.+||||++++. ..+.+|++.++|+||+|||+|.|.+... .+....|.+.|||+|+
T Consensus 166 ~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r~tlnP~fnEtf~f~v~~~-~l~~~~L~l~V~~~dr 244 (421)
T KOG1028|consen 166 LNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHRKTLNPVFNETFRFEVPYE-ELSNRVLHLSVYDFDR 244 (421)
T ss_pred CCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeeecCcCCccccceEeecCHH-HhccCEEEEEEEecCC
Confidence 45799999999999999977889999999995 4679999999999999999999997663 3448899999999999
Q ss_pred CCCCCCCCCceeEEEEEeCeeeeeeCCceeEEEEceecCCce-eeeEEEEEEEEEEecCcccccCCCCCCCCCCCCCCCC
Q 042999 92 YCNGSGRKNHFLGRVKLCGSQFARRGDEGLVYFPLEKKSVFS-WIRGEIGLRIYYYDELSEEEHQHPPPPQDEPPPPQPP 170 (1006)
Q Consensus 92 ~~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~~~~-~~~G~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (1006)
+ +++++||++.+++..+ ........|.+|....... ...|+|.+.++|.+...
T Consensus 245 f-----sr~~~iGev~~~l~~~-~~~~~~~~w~~l~~~~~~~~~~~gel~~sL~Y~p~~g-------------------- 298 (421)
T KOG1028|consen 245 F-----SRHDFIGEVILPLGEV-DLLSTTLFWKDLQPSSTDSEELAGELLLSLCYLPTAG-------------------- 298 (421)
T ss_pred c-----ccccEEEEEEecCccc-cccccceeeeccccccCCcccccceEEEEEEeecCCC--------------------
Confidence 9 8999999999998885 4444466899998754332 22379999999987641
Q ss_pred CCCCCcccccCCcccccCCCCccccCCCCccccCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCchhhhhhcc
Q 042999 171 QQQPGVCVVEEGRVFEVPGGHVEVCHPVPEIYHGQPPPQAPIIEESQPHGVHVQPEPVQIPPHDEPIPTAVPAAEIRKMQ 250 (1006)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 250 (1006)
T Consensus 299 -------------------------------------------------------------------------------- 298 (421)
T KOG1028|consen 299 -------------------------------------------------------------------------------- 298 (421)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccccccCCCCCCCCccccCCCCCCCCCCCCCCCcccccccceEEEEEEEeeCCCC-----CCCcEEEEEECC---
Q 042999 251 SGCAERVNVLKRPNGDYSPKVINSSKPNGEVPTERIHPYDLVEPMMYLFVKIRKARGLVP-----NEAPYVKIRTSS--- 322 (1006)
Q Consensus 251 ~~~~~~~~~~~~p~~~~~~~~~~p~~~~~~~~~~~~~~~~l~~~~~~l~V~v~~a~~l~~-----~~dpyv~v~~~~--- 322 (1006)
.|.|.|++|++|.. .+||||++.+-.
T Consensus 299 ----------------------------------------------~ltv~v~kar~L~~~~~~~~~d~~Vk~~l~~~~~ 332 (421)
T KOG1028|consen 299 ----------------------------------------------RLTVVVIKARNLKSMDVGGLSDPYVKVTLLDGDK 332 (421)
T ss_pred ----------------------------------------------eEEEEEEEecCCCcccCCCCCCccEEEEEecCCc
Confidence 04478889999874 459999999753
Q ss_pred --eeeeeeEeeccCCCCCCCCeeceEEEEeccCCCCCCCEEEEEEEcCCC---CCccEEEEEeCCc
Q 042999 323 --HYKKSKLASYRACDPHDSPEWNQVFALFHNKNDSVSATLEITVWDSPT---ENFLGGVCFDLSD 383 (1006)
Q Consensus 323 --~~~~T~~~~~~~~~~~~nP~wne~f~f~~~~~~~~~~~l~i~V~D~~~---d~~lG~~~i~l~~ 383 (1006)
.+.+|.+. +++.||+|||+|.|.+.........|.|+|||+++ +++||.+.+....
T Consensus 333 ~~~kkkT~~~-----~~~~npv~nesf~F~vp~~~l~~~~l~l~V~d~d~~~~~~~iG~~~lG~~~ 393 (421)
T KOG1028|consen 333 RLSKKKTSVK-----KKTLNPVFNETFVFDVPPEQLAEVSLELTVWDHDTLGSNDLIGRCILGSDS 393 (421)
T ss_pred eeeeeeeecc-----cCCCCCcccccEEEeCCHHHhheeEEEEEEEEcccccccceeeEEEecCCC
Confidence 34566666 99999999999999766433226789999999883 7799999887654
No 5
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=1.8e-22 Score=227.86 Aligned_cols=216 Identities=22% Similarity=0.281 Sum_probs=172.8
Q ss_pred ceEEEEEEEEEeecCcccCCCCCCCCCCcEEEEEECC---ccceeeeeecCCCCCCceecceeeeeeccC--CCCcEEEE
Q 042999 453 KLWYLRVTVMEAQDLCIAHNLPPLTAPEIRVKAQLAL---QSARTRRGSMNNHSSSFHWHEDVFFVAAEP--FEDSLILL 527 (1006)
Q Consensus 453 ~~~~L~V~v~~a~~L~~~~~~d~~~~~dpyv~v~lg~---~~~kT~~~~~~~~t~nP~w~e~~~f~v~~~--~~~~L~v~ 527 (1006)
+...|.|+|++|+||+.+ |..|.+||||++++.. .+.+|++.+ +++||.|||.|.|.|... ....|.+.
T Consensus 165 ~~~~L~V~V~qa~~Lp~~---d~~g~sdpyVK~~llPdk~~k~kT~v~r---~tlnP~fnEtf~f~v~~~~l~~~~L~l~ 238 (421)
T KOG1028|consen 165 ELNLLTVRVIQAHDLPAK---DRGGTSDPYVKVYLLPDKKGKFKTRVHR---KTLNPVFNETFRFEVPYEELSNRVLHLS 238 (421)
T ss_pred cCCEEEEEEEEecCCCcc---cCCCCCCCeeEEEEcCCCCCcceeeeee---cCcCCccccceEeecCHHHhccCEEEEE
Confidence 345699999999999988 6667899999999964 556787764 999999999999986533 35589999
Q ss_pred EEECCCCccccceeEEEEEeccccccccccCcccceEEeCcCCCCCCCccceeeeEEEEEeeeCCccccccccccCCCCC
Q 042999 528 VEDRTAKDAAAVILGHAVVPVSSIDQRIDERHVASKWFPLEGSCGRGCARSYCGRIQLKLCLEGGYHVLDEAAHVCSDFR 607 (1006)
Q Consensus 528 V~D~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L~~~~~~~~~~~~~G~l~l~v~l~~~~~~~d~~~~~~~~~~ 607 (1006)
|||.|..+ ++++||++.++|..+... .....|..|....... ....|+|.+.++...
T Consensus 239 V~~~drfs-r~~~iGev~~~l~~~~~~----~~~~~w~~l~~~~~~~--~~~~gel~~sL~Y~p---------------- 295 (421)
T KOG1028|consen 239 VYDFDRFS-RHDFIGEVILPLGEVDLL----STTLFWKDLQPSSTDS--EELAGELLLSLCYLP---------------- 295 (421)
T ss_pred EEecCCcc-cccEEEEEEecCcccccc----ccceeeeccccccCCc--ccccceEEEEEEeec----------------
Confidence 99999854 599999999999888753 1245699988754321 112289998876442
Q ss_pred ccccccCCCCcEEEEEEEeeccCCccCccCCCCCCCCCeEEEEEE--CC---EEEEeecccCCCCCeeccEEEEEEeC--
Q 042999 608 PTAKQLWKPPVGILELGILGARGLLPMKTKNGGKGSTDAYCVAKY--GK---KWVRTRTITDCFDPRWNEQYTWQVYD-- 680 (1006)
Q Consensus 608 p~~~~l~~~~~g~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~--~~---~~~rT~~~~~~~nP~wne~~~~~v~~-- 680 (1006)
..|.|+|.|++|++|+.++. .+.+||||++.+ +. ++.+|.+.++++||+|||+|.|.|..
T Consensus 296 ---------~~g~ltv~v~kar~L~~~~~----~~~~d~~Vk~~l~~~~~~~~kkkT~~~~~~~npv~nesf~F~vp~~~ 362 (421)
T KOG1028|consen 296 ---------TAGRLTVVVIKARNLKSMDV----GGLSDPYVKVTLLDGDKRLSKKKTSVKKKTLNPVFNETFVFDVPPEQ 362 (421)
T ss_pred ---------CCCeEEEEEEEecCCCcccC----CCCCCccEEEEEecCCceeeeeeeecccCCCCCcccccEEEeCCHHH
Confidence 35899999999999998764 788999999987 32 35688899999999999999998864
Q ss_pred -CCcEEEEEEEECCCCCcCCCCCCCCceeEEEEEEccc
Q 042999 681 -PCTVLTVGVFDNWRMFADASEERPDYRIGKIRIRVST 717 (1006)
Q Consensus 681 -~~~~l~i~v~d~~~~~~~~~~~~~d~~lG~~~i~l~~ 717 (1006)
....|.|+|||+|.++ .+++||.+.+....
T Consensus 363 l~~~~l~l~V~d~d~~~-------~~~~iG~~~lG~~~ 393 (421)
T KOG1028|consen 363 LAEVSLELTVWDHDTLG-------SNDLIGRCILGSDS 393 (421)
T ss_pred hheeEEEEEEEEccccc-------ccceeeEEEecCCC
Confidence 3347999999999998 77899988887664
No 6
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=99.89 E-value=1.2e-22 Score=225.31 Aligned_cols=250 Identities=20% Similarity=0.291 Sum_probs=198.0
Q ss_pred EEEEEEEEeecCcccCCCCCCCCCCcEEEEEECC-ccceeeeeecCCCCCCceecceeeeeeccCCCCcEEEEEEECCCC
Q 042999 456 YLRVTVMEAQDLCIAHNLPPLTAPEIRVKAQLAL-QSARTRRGSMNNHSSSFHWHEDVFFVAAEPFEDSLILLVEDRTAK 534 (1006)
Q Consensus 456 ~L~V~v~~a~~L~~~~~~d~~~~~dpyv~v~lg~-~~~kT~~~~~~~~t~nP~w~e~~~f~v~~~~~~~L~v~V~D~~~~ 534 (1006)
.|.|.|.+|+||++. +..|..||||.|.+.+ .++||.++. +++.|.|.|+|.|.+...+. .|.|.|||.|..
T Consensus 6 sl~vki~E~knL~~~---~~~g~~D~yC~v~lD~E~v~RT~tv~---ksL~PF~gEe~~~~iP~~F~-~l~fYv~D~d~~ 78 (800)
T KOG2059|consen 6 SLKVKIGEAKNLPSY---GPSGMRDCYCTVNLDQEEVCRTATVE---KSLCPFFGEEFYFEIPRTFR-YLSFYVWDRDLK 78 (800)
T ss_pred ceeEEEeecccCCCC---CCCCCcCcceEEeecchhhhhhhhhh---hhcCCccccceEEecCccee-eEEEEEeccccc
Confidence 489999999999987 8899999999999976 788999876 99999999999999886664 699999999955
Q ss_pred ccccceeEEEEEeccccccccccCcccceEEeCcCCCCCCCccceeeeEEEEEeeeCCccccccccccCCCCCccccccC
Q 042999 535 DAAAVILGHAVVPVSSIDQRIDERHVASKWFPLEGSCGRGCARSYCGRIQLKLCLEGGYHVLDEAAHVCSDFRPTAKQLW 614 (1006)
Q Consensus 535 ~~~d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L~~~~~~~~~~~~~G~l~l~v~l~~~~~~~d~~~~~~~~~~p~~~~l~ 614 (1006)
. |++||.+.|.-.+|...+ ....||.|...+. +.+.+|++++.+.+...-. .
T Consensus 79 ~--D~~IGKvai~re~l~~~~----~~d~W~~L~~VD~---dsEVQG~v~l~l~~~e~~~---~---------------- 130 (800)
T KOG2059|consen 79 R--DDIIGKVAIKREDLHMYP----GKDTWFSLQPVDP---DSEVQGKVHLELALTEAIQ---S---------------- 130 (800)
T ss_pred c--ccccceeeeeHHHHhhCC----CCccceeccccCC---ChhhceeEEEEEEeccccC---C----------------
Confidence 5 999999999988887643 3567999998765 6788999999998764221 0
Q ss_pred CCCcEEEEEEEeeccCCccCccCCCCCCCCCeEEEEEECCEE----EEeecccCCCCCeeccEEEEEEeCC---------
Q 042999 615 KPPVGILELGILGARGLLPMKTKNGGKGSTDAYCVAKYGKKW----VRTRTITDCFDPRWNEQYTWQVYDP--------- 681 (1006)
Q Consensus 615 ~~~~g~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~~~~----~rT~~~~~~~nP~wne~~~~~v~~~--------- 681 (1006)
..+.-.++.++.+.|.+ +|.+||||.+...+.+ .+|++.++|.+|.|+|.|.|.+...
T Consensus 131 ----~~~~c~~L~~r~~~P~~-----~~~~dp~~~v~~~g~~~~~~~~T~~~kkt~~p~~~Ev~~f~~~~~~~~s~ks~~ 201 (800)
T KOG2059|consen 131 ----SGLVCHVLKTRQGLPII-----NGQCDPFARVTLCGPSKLKEKKTKVKKKTTNPQFDEVFYFEVTREESYSKKSLF 201 (800)
T ss_pred ----CcchhhhhhhcccCcee-----CCCCCcceEEeecccchhhccccceeeeccCcchhhheeeeeccccccccchhc
Confidence 01222344455555543 5669999999986544 4999999999999999999998543
Q ss_pred -------CcEEEEEEEEC-CCCCcCCCCCCCCceeEEEEEEcccccCCceEeeEEEeeeeccCC-c---ccccEEEEEEE
Q 042999 682 -------CTVLTVGVFDN-WRMFADASEERPDYRIGKIRIRVSTLENNKVYTTSYPLLVLLRTG-L---KKMGEIELAVR 749 (1006)
Q Consensus 682 -------~~~l~i~v~d~-~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g-~---~~~G~l~l~~~ 749 (1006)
...|.+++|++ +... .++|+|++++++..+........||-|....... . ...|.+++.++
T Consensus 202 ~~~~e~~~l~irv~lW~~~~~~~-------~~~FlGevrv~v~~~~~~s~p~~W~~Lqp~~~g~~~~~~~~lGslrl~v~ 274 (800)
T KOG2059|consen 202 MPEEEDDMLEIRVDLWNDLNLVI-------NDVFLGEVRVPVDVLRQKSSPAAWYYLQPRPNGEKSSDGGDLGSLRLNVT 274 (800)
T ss_pred CcccCCceeeEEEeeccchhhhh-------hhhhceeEEeehhhhhhccCccceEEEecCCCcccCCCCCCccceeeeEE
Confidence 23789999994 4433 6999999999999887666668999998764311 1 12399999999
Q ss_pred EecCCCC
Q 042999 750 FVCPSML 756 (1006)
Q Consensus 750 ~~~~~~~ 756 (1006)
|+.+.++
T Consensus 275 y~~D~Vl 281 (800)
T KOG2059|consen 275 YTEDHVL 281 (800)
T ss_pred eeeceec
Confidence 9988766
No 7
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.88 E-value=4.7e-22 Score=185.83 Aligned_cols=125 Identities=66% Similarity=1.139 Sum_probs=106.7
Q ss_pred EEEEEEeeccCCccCccCCCCCCCCCeEEEEEECCEEEEeecccCCCCCeeccEEEEEEeCCCcEEEEEEEECCCCCcCC
Q 042999 620 ILELGILGARGLLPMKTKNGGKGSTDAYCVAKYGKKWVRTRTITDCFDPRWNEQYTWQVYDPCTVLTVGVFDNWRMFADA 699 (1006)
Q Consensus 620 ~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~~~~~rT~~~~~~~nP~wne~~~~~v~~~~~~l~i~v~d~~~~~~~~ 699 (1006)
.|+|+|++|+||+.+...|. .|++||||+|++|++++||+++++++||+|||+|.|++.++...|+|+|||++..+ .+
T Consensus 1 ~L~v~v~~A~~~~~l~~~d~-~g~sDPYv~i~~g~~~~rTk~~~~~~nP~WnE~f~f~v~~~~~~l~v~V~d~d~~~-~~ 78 (126)
T cd08379 1 ILEVGILGAQGLDVLRAKDG-RGSTDAYCVAKYGPKWVRTRTVEDSSNPRWNEQYTWPVYDPCTVLTVGVFDNSQSH-WK 78 (126)
T ss_pred CeEEEEEEeECCcccccccc-CCCCCeeEEEEECCEEeEcCcccCCCCCcceeEEEEEecCCCCEEEEEEEECCCcc-cc
Confidence 38999999999433333566 89999999999999999999999999999999999999998889999999998762 00
Q ss_pred CCCCCCceeEEEEEEcccccCCceEeeEEEeeeeccCCcccccEEEE
Q 042999 700 SEERPDYRIGKIRIRVSTLENNKVYTTSYPLLVLLRTGLKKMGEIEL 746 (1006)
Q Consensus 700 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~l~l 746 (1006)
....+|++||++.|+|+.+..+..+..||+|.+.+.++.++.|+|++
T Consensus 79 ~~~~~dd~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~g~l~~ 125 (126)
T cd08379 79 EAVQPDVLIGKVRIRLSTLEDDRVYAHSYPLLSLNPSGVKKMGELEC 125 (126)
T ss_pred ccCCCCceEEEEEEEHHHccCCCEEeeEEEeEeCCCCCccCCcEEEe
Confidence 00116999999999999999998889999999887777778899986
No 8
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=99.87 E-value=1.5e-21 Score=181.29 Aligned_cols=119 Identities=24% Similarity=0.379 Sum_probs=104.0
Q ss_pred cEEEEEEEeeccCCccCccCCCCCCCCCeEEEEEECCEEEEeecccC-CCCCeeccEEEEEEeCCCcEEEEEEEECCCCC
Q 042999 618 VGILELGILGARGLLPMKTKNGGKGSTDAYCVAKYGKKWVRTRTITD-CFDPRWNEQYTWQVYDPCTVLTVGVFDNWRMF 696 (1006)
Q Consensus 618 ~g~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~~~~~rT~~~~~-~~nP~wne~~~~~v~~~~~~l~i~v~d~~~~~ 696 (1006)
.|.|+|+|++|++|+.. . .|++||||+|.+|++.+||+++.+ +.||+|||+|.|++.+....|.|+|||+|.++
T Consensus 1 ~g~L~v~v~~Ak~l~~~----~-~g~sDPYv~i~lg~~~~kT~v~~~~~~nP~WNe~F~f~v~~~~~~l~~~V~d~d~~~ 75 (121)
T cd04016 1 VGRLSITVVQAKLVKNY----G-LTRMDPYCRIRVGHAVYETPTAYNGAKNPRWNKTIQCTLPEGVDSIYIEIFDERAFT 75 (121)
T ss_pred CcEEEEEEEEccCCCcC----C-CCCCCceEEEEECCEEEEeEEccCCCCCCccCeEEEEEecCCCcEEEEEEEeCCCCc
Confidence 48999999999988643 2 579999999999999999999876 79999999999999877778999999999987
Q ss_pred cCCCCCCCCceeEEEEEEcc-cccCCceEeeEEEeeeeccCCcccccEEEEEEEE
Q 042999 697 ADASEERPDYRIGKIRIRVS-TLENNKVYTTSYPLLVLLRTGLKKMGEIELAVRF 750 (1006)
Q Consensus 697 ~~~~~~~~d~~lG~~~i~l~-~l~~~~~~~~~~~L~~~~~~g~~~~G~l~l~~~~ 750 (1006)
+|++||.+.|++. .+..++..+.||+|.... |..+.|+|+|.++|
T Consensus 76 -------~dd~iG~~~i~l~~~~~~g~~~~~W~~L~~~~--~~~~~g~i~l~l~y 121 (121)
T cd04016 76 -------MDERIAWTHITIPESVFNGETLDDWYSLSGKQ--GEDKEGMINLVFSY 121 (121)
T ss_pred -------CCceEEEEEEECchhccCCCCccccEeCcCcc--CCCCceEEEEEEeC
Confidence 8999999999996 577888789999997643 33456999999986
No 9
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.87 E-value=1.9e-21 Score=188.93 Aligned_cols=147 Identities=52% Similarity=0.867 Sum_probs=125.3
Q ss_pred EEEEEEEEeecCcccCCCCCCCCCCcEEEEEECCccceeeeeecCCCCCCceecceeeeeeccCCCCcEEEEEEECCCCc
Q 042999 456 YLRVTVMEAQDLCIAHNLPPLTAPEIRVKAQLALQSARTRRGSMNNHSSSFHWHEDVFFVAAEPFEDSLILLVEDRTAKD 535 (1006)
Q Consensus 456 ~L~V~v~~a~~L~~~~~~d~~~~~dpyv~v~lg~~~~kT~~~~~~~~t~nP~w~e~~~f~v~~~~~~~L~v~V~D~~~~~ 535 (1006)
+|+|+|++|+||+.+ +.+|.+||||++.+|++.++|+++. ++++||.|||.|.|.+.++..+.|.|.|+|++..+
T Consensus 1 ~L~V~Vi~A~~L~~~---d~~g~sDPYV~v~l~~~~~kTk~~~--~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~~~ 75 (150)
T cd04019 1 YLRVTVIEAQDLVPS---DKNRVPEVFVKAQLGNQVLRTRPSQ--TRNGNPSWNEELMFVAAEPFEDHLILSVEDRVGPN 75 (150)
T ss_pred CEEEEEEEeECCCCC---CCCCCCCeEEEEEECCEEeeeEecc--CCCCCCcccCcEEEEecCccCCeEEEEEEEecCCC
Confidence 389999999999987 7788999999999999999999864 23799999999999998877788999999998753
Q ss_pred cccceeEEEEEeccccccccccCcccceEEeCcCCCC---CCCccceeeeEEEEEeeeCCccccccccccCCCCCc
Q 042999 536 AAAVILGHAVVPVSSIDQRIDERHVASKWFPLEGSCG---RGCARSYCGRIQLKLCLEGGYHVLDEAAHVCSDFRP 608 (1006)
Q Consensus 536 ~~d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L~~~~~---~~~~~~~~G~l~l~v~l~~~~~~~d~~~~~~~~~~p 608 (1006)
++++||++.++|+++....+.+....+||+|....+ .++..+.+|+|+|+++|.++|++.++..++++|++|
T Consensus 76 -~dd~lG~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~~~~~~~~~~~~~~~~~~~ 150 (150)
T cd04019 76 -KDEPLGRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLDGGYHVLDESTHYSSDLRP 150 (150)
T ss_pred -CCCeEEEEEEEHHHCcccCCCCccCCceEECcCCCCcccccccCcccccEEEEEEecCcceEeecccccccCCCC
Confidence 489999999999998754333455789999998754 123456789999999999999999999999998775
No 10
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=99.85 E-value=1.5e-20 Score=216.01 Aligned_cols=402 Identities=19% Similarity=0.198 Sum_probs=231.8
Q ss_pred cccEEEEEEEEecCCCCCCCCCCCCcEEEEEECCeEEEeeCcCCCCCCeeeeEEEEEe---eCCC---CCCCceEEEEEE
Q 042999 14 TVRKLVVEVVDARDLLPKDGQGSSSPYVIADFDGQRKRTSTKFRDLNPVWNEPLEFIV---SDPK---NMDCEELEIEVY 87 (1006)
Q Consensus 14 ~~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~---~~~~---~~~~~~L~i~V~ 87 (1006)
....++++|..|+.|...+..+.+|||+.+.+.++.+.|.++.+|+||.|+++..|.- .... ...-..+.++||
T Consensus 204 ~~~~lR~yiyQar~L~a~dk~~~sdp~a~v~f~~qs~~T~~v~~tl~ptwdq~~~f~~~ei~ge~~~~~~~ppi~v~e~y 283 (1105)
T KOG1326|consen 204 IHSPLRSYIYQARALGAPDKDDESDPDAAVEFCGQSKETEVVPGTLNPTWDQTIIFDEVEIYGEAHLVLKNPPIRVFEVY 283 (1105)
T ss_pred hhhhhHHHHHHHHhhcCCCcccCCCchhhhhcccccceeEeecCcCCCCccceeeccceeecCccchhhcCCCeEEEEee
Confidence 3456778899999999999899999999999999999999999999999999999862 1110 011245789999
Q ss_pred eCCCCCCCCCCCCceeEEEEEeCeeeeeeCCceeEEEEceecCCceeeeEEEEEEEEEEecCcccccCCCCCCCCCCCCC
Q 042999 88 NDKRYCNGSGRKNHFLGRVKLCGSQFARRGDEGLVYFPLEKKSVFSWIRGEIGLRIYYYDELSEEEHQHPPPPQDEPPPP 167 (1006)
Q Consensus 88 d~d~~~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (1006)
|.++. +.++|+|+..+...-++. .....|+++...+.. .|++.+....+.... +
T Consensus 284 d~dr~-----g~~ef~gr~~~~p~V~~~--~p~lkw~p~~rg~~l---~gd~l~a~eliq~~~------~---------- 337 (1105)
T KOG1326|consen 284 DLDRS-----GINEFKGRKKQRPYVMVQ--CPALKWVPTMRGAFL---DGDVLIAAELIQIGK------P---------- 337 (1105)
T ss_pred hhhhh-----chHHhhcccccceEEEec--CCccceEEeeccccc---ccchhHHHHHHhhcC------C----------
Confidence 99999 899999999887665433 334568888754321 233332222211110 0
Q ss_pred CCCCCCCCcccccCCcccccCCCCccccCCCCccccCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCchhhhh
Q 042999 168 QPPQQQPGVCVVEEGRVFEVPGGHVEVCHPVPEIYHGQPPPQAPIIEESQPHGVHVQPEPVQIPPHDEPIPTAVPAAEIR 247 (1006)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 247 (1006)
.+.|+.. +.
T Consensus 338 -----------------------------------i~~p~~~-------------------------~~----------- 346 (1105)
T KOG1326|consen 338 -----------------------------------IPQPPPQ-------------------------RE----------- 346 (1105)
T ss_pred -----------------------------------CCCCCcc-------------------------cc-----------
Confidence 0000000 00
Q ss_pred hcccccccccccccCCCCCCCCccccCCCCCCCCCCCCCCCcccccccceEEEEEEEeeCCCCCCCcEEEEEECCeeeee
Q 042999 248 KMQSGCAERVNVLKRPNGDYSPKVINSSKPNGEVPTERIHPYDLVEPMMYLFVKIRKARGLVPNEAPYVKIRTSSHYKKS 327 (1006)
Q Consensus 248 ~~~~~~~~~~~~~~~p~~~~~~~~~~p~~~~~~~~~~~~~~~~l~~~~~~l~V~v~~a~~l~~~~dpyv~v~~~~~~~~T 327 (1006)
..+... .+.|.|.+-.+. -.+. . -.++..+..++.....|-+-+.+|++..+|
T Consensus 347 ---------~~~~~v------p~~iRp~~q~~~--------~evl---~-wgLrn~k~~~m~~~~~P~~~~e~g~e~v~s 399 (1105)
T KOG1326|consen 347 ---------IIFSLV------PKKIRPKTQIGK--------AELL---M-WGLRNPKKSGMASTFSPALLVEFGGERVSS 399 (1105)
T ss_pred ---------cceecc------ccCCCcceeeee--------eehh---h-hhhcccccccccccCCcceeEeeCCceEee
Confidence 000000 011111111110 0000 0 012223333444566899999999988777
Q ss_pred eEeeccCCCCCCCCeeceEEEEeccC-CC--CCCCEEEEEEEcCC---CCCccEEEEEeCCcCCCCCCCC-CCCc-----
Q 042999 328 KLASYRACDPHDSPEWNQVFALFHNK-ND--SVSATLEITVWDSP---TENFLGGVCFDLSDVPVRDPPD-SPLA----- 395 (1006)
Q Consensus 328 ~~~~~~~~~~~~nP~wne~f~f~~~~-~~--~~~~~l~i~V~D~~---~d~~lG~~~i~l~~l~~~~~~~-~~~~----- 395 (1006)
-.+. ....||.++..|.+.... +. .-..++.++|+|.+ ....+|.|.+.--.=....|.. ....
T Consensus 400 ~~I~----~~k~npnf~s~~~~~~v~lpd~e~Y~ppl~akvvd~~~fg~~~v~g~c~i~~l~nf~c~p~~~~~~~Pq~~~ 475 (1105)
T KOG1326|consen 400 FSIF----NRKKNPNFPSRVLGRLVILPDEELYMPPLNAKVVDLRQFGRMEVVGQCKILSLYNFFCDPSAVNSITPQFAS 475 (1105)
T ss_pred eeeh----hhhhCCCCceeEEEEEEeccchHhhCccceeEEEecccccceeehhhhcchhhhhhccCchhhcccCcCCCC
Confidence 7772 455677777766553222 21 13578999999965 4788898877422111111100 0000
Q ss_pred ------------------ceeEEcccCCC------------CCC--cceee-------EEEEEEEeecCCCC---cCc--
Q 042999 396 ------------------PQWYRLEGEAS------------DQN--NRVSG-------DIQLAVWIGTQADE---AFP-- 431 (1006)
Q Consensus 396 ------------------~~w~~L~~~~~------------~~~--~~~~g-------~l~~~~~~~~~~d~---~~~-- 431 (1006)
..|+....... ... ....+ ...+.++ ...+| +|.
T Consensus 476 d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~e~~~~~w~k~~~~~~~~~k~~~~~~K~~~~LKiy--n~ele~v~ef~~l 553 (1105)
T KOG1326|consen 476 DPVSIMMGSTDNEIRHCNSSTLPASPHEDEEEREVDWWGKFYPSAEENAKWEVYEHKINVTLKIY--NMELEMVAEFRGL 553 (1105)
T ss_pred CchhhhcCCchhhhhhccccCCCCCccccccceehhhhhhccccccccccccccccccceEEEEe--hhhhhhHHHHhhh
Confidence 00111110000 000 00000 0011110 00000 000
Q ss_pred cccCC--------------CCC--Cccccccccc--------------------cCCceEEEEEEEEEeecCcccCCCCC
Q 042999 432 EAWSS--------------DAP--YVTHTRSKVY--------------------QSPKLWYLRVTVMEAQDLCIAHNLPP 475 (1006)
Q Consensus 432 ~~~~~--------------~~~--~~~~~~~~~~--------------------~~p~~~~L~V~v~~a~~L~~~~~~d~ 475 (1006)
+.|.. +.. +....+.++| ..|....++|+|++|-+|.+. |.
T Consensus 554 ~D~~~~f~l~rG~~~~e~~e~~Ivg~fKgl~rIyp~~~~~~~p~~pr~~~~~~~~~pi~~LvrVyvv~A~~L~p~---D~ 630 (1105)
T KOG1326|consen 554 QDWAVTFKLYRGKEGLECLEQQIVGEFKGLFRIYPVPRNPSSPAPPRHFLDLPKEEPIKCLVRVYVVEAFSLQPS---DG 630 (1105)
T ss_pred hhccceeEeeeccccCCCcccchhhhhhcceeeecCCCccCCCCChhhhhcccccCcceeeEEEEEEEeeecccc---CC
Confidence 00000 000 0000000000 125556699999999999998 89
Q ss_pred CCCCCcEEEEEECCccceeeeeecCCCCCCceecceeeeeeccCCCCcEEEEEEECCCCccccceeEEEEEeccc
Q 042999 476 LTAPEIRVKAQLALQSARTRRGSMNNHSSSFHWHEDVFFVAAEPFEDSLILLVEDRTAKDAAAVILGHAVVPVSS 550 (1006)
Q Consensus 476 ~~~~dpyv~v~lg~~~~kT~~~~~~~~t~nP~w~e~~~f~v~~~~~~~L~v~V~D~~~~~~~d~~lG~~~i~l~~ 550 (1006)
+|++||||++.+|++....+.- .+.+|+||+|++.|++....+....|.+.|||+|..+ .|+.||+..++|..
T Consensus 631 ng~adpYv~l~lGk~~~~d~~~-yip~tlnPVfgkmfel~~~lp~ek~l~v~vyd~D~~~-~d~~iget~iDLEn 703 (1105)
T KOG1326|consen 631 NGDADPYVKLLLGKKRTLDRAH-YIPNTLNPVFGKMFELECLLPFEKDLIVEVYDHDLEA-QDEKIGETTIDLEN 703 (1105)
T ss_pred CCCcCceeeeeeccchhhhhhh-cCcCCCCcHHHHHHHhhcccchhhcceeEEEEeeccc-ccchhhceehhhhh
Confidence 9999999999999876544443 3459999999999999999999999999999999644 59999999999876
No 11
>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=99.84 E-value=5.7e-21 Score=179.40 Aligned_cols=116 Identities=31% Similarity=0.489 Sum_probs=100.9
Q ss_pred CcEEEEEEEeeccCCccCccCCCCCCCCCeEEEEEECCEEEEeecccCCCCCeeccEEEEEEeCCCcEEEEEEEECCCCC
Q 042999 617 PVGILELGILGARGLLPMKTKNGGKGSTDAYCVAKYGKKWVRTRTITDCFDPRWNEQYTWQVYDPCTVLTVGVFDNWRMF 696 (1006)
Q Consensus 617 ~~g~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~~~~~rT~~~~~~~nP~wne~~~~~v~~~~~~l~i~v~d~~~~~ 696 (1006)
.+|.|+|.|++|.||... |. .++|||||++.+|+++.||+++++++||+|||.|+|.|.++...|+++|||+|.++
T Consensus 4 ~vGLL~v~v~~g~~L~~r---D~-~~sSDPyVVl~lg~q~lkT~~v~~n~NPeWNe~ltf~v~d~~~~lkv~VyD~D~fs 79 (168)
T KOG1030|consen 4 LVGLLRVRVKRGKNLAIR---DF-LGSSDPYVVLELGNQKLKTRVVYKNLNPEWNEELTFTVKDPNTPLKVTVYDKDTFS 79 (168)
T ss_pred cceEEEEEEEeecCeeee---cc-ccCCCCeEEEEECCeeeeeeeecCCCCCcccceEEEEecCCCceEEEEEEeCCCCC
Confidence 589999999999999874 44 68999999999999999999999999999999999999999999999999999998
Q ss_pred cCCCCCCCCceeEEEEEEcccccCCceEeeEEEeeeeccCCcccccEEEEE
Q 042999 697 ADASEERPDYRIGKIRIRVSTLENNKVYTTSYPLLVLLRTGLKKMGEIELA 747 (1006)
Q Consensus 697 ~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~l~l~ 747 (1006)
+||+||.++|+|..+.... ..+| |....+.|... |++.++
T Consensus 80 -------~dD~mG~A~I~l~p~~~~~--~~~~-l~~~~~~gt~~-~~v~~s 119 (168)
T KOG1030|consen 80 -------SDDFMGEATIPLKPLLEAQ--KMDY-LKLELLTGTAI-GKVLLS 119 (168)
T ss_pred -------cccccceeeeccHHHHHHh--hhhc-cccccCCCcEe-eEEEec
Confidence 8999999999999998776 4566 65555555433 655553
No 12
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=99.83 E-value=7e-20 Score=170.14 Aligned_cols=120 Identities=18% Similarity=0.307 Sum_probs=102.5
Q ss_pred ccEEEEEEEEecCCCCCCCCCCCCcEEEEEECCeEEEeeCcCC-CCCCeeeeEEEEEeeCCCCCCCceEEEEEEeCCCCC
Q 042999 15 VRKLVVEVVDARDLLPKDGQGSSSPYVIADFDGQRKRTSTKFR-DLNPVWNEPLEFIVSDPKNMDCEELEIEVYNDKRYC 93 (1006)
Q Consensus 15 ~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~~~~kT~~~~~-t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~d~~~ 93 (1006)
.|.|.|+|++|++|+..+ .|++||||++.+++++++|+++.+ +.||+|||+|.|.+... ...|.|+|||+|.+
T Consensus 1 ~g~L~v~v~~Ak~l~~~~-~g~sDPYv~i~lg~~~~kT~v~~~~~~nP~WNe~F~f~v~~~----~~~l~~~V~d~d~~- 74 (121)
T cd04016 1 VGRLSITVVQAKLVKNYG-LTRMDPYCRIRVGHAVYETPTAYNGAKNPRWNKTIQCTLPEG----VDSIYIEIFDERAF- 74 (121)
T ss_pred CcEEEEEEEEccCCCcCC-CCCCCceEEEEECCEEEEeEEccCCCCCCccCeEEEEEecCC----CcEEEEEEEeCCCC-
Confidence 368999999999988777 789999999999999999999875 89999999999998764 35799999999999
Q ss_pred CCCCCCCceeEEEEEeCeeeeeeCCceeEEEEceecCCceeeeEEEEEEEEE
Q 042999 94 NGSGRKNHFLGRVKLCGSQFARRGDEGLVYFPLEKKSVFSWIRGEIGLRIYY 145 (1006)
Q Consensus 94 ~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~ 145 (1006)
++|++||.+.+++...+..+.....|++|.+... ....|+|+|+++|
T Consensus 75 ----~~dd~iG~~~i~l~~~~~~g~~~~~W~~L~~~~~-~~~~g~i~l~l~y 121 (121)
T cd04016 75 ----TMDERIAWTHITIPESVFNGETLDDWYSLSGKQG-EDKEGMINLVFSY 121 (121)
T ss_pred ----cCCceEEEEEEECchhccCCCCccccEeCcCccC-CCCceEEEEEEeC
Confidence 7899999999999643456666789999986432 2357999999986
No 13
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=99.83 E-value=8.2e-20 Score=179.49 Aligned_cols=125 Identities=25% Similarity=0.280 Sum_probs=109.8
Q ss_pred cEEEEEEEeeccCCccCccC---------------------------CCCCCCCCeEEEEEECCEE-EEeecccCCCCCe
Q 042999 618 VGILELGILGARGLLPMKTK---------------------------NGGKGSTDAYCVAKYGKKW-VRTRTITDCFDPR 669 (1006)
Q Consensus 618 ~g~L~v~v~~a~~L~~~~~~---------------------------d~~~g~sdpyv~v~~~~~~-~rT~~~~~~~nP~ 669 (1006)
-|.|.|+|++|++|++||.. .. .|++||||+|.+++.. .||++++++.||+
T Consensus 6 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~sDPYv~V~l~~~~~~rT~v~~~~~nP~ 84 (158)
T cd04015 6 HGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVG-KITSDPYATVDLAGARVARTRVIENSENPV 84 (158)
T ss_pred eeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCC-CCCcCeEEEEEECCeEeeEEEEeCCCCCCc
Confidence 48999999999999998731 23 7889999999999765 5999999999999
Q ss_pred eccEEEEEEeCCCcEEEEEEEECCCCCcCCCCCCCCceeEEEEEEcccccCCceEeeEEEeeeeccCCcccccEEEEEEE
Q 042999 670 WNEQYTWQVYDPCTVLTVGVFDNWRMFADASEERPDYRIGKIRIRVSTLENNKVYTTSYPLLVLLRTGLKKMGEIELAVR 749 (1006)
Q Consensus 670 wne~~~~~v~~~~~~l~i~v~d~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~l~l~~~ 749 (1006)
|||+|.|++.++.+.|+|.|||+|.++ +++||++.|++.++..+...+.||+|.+...++.+..|+|+|+++
T Consensus 85 WnE~F~~~~~~~~~~l~~~V~d~d~~~--------~~~IG~~~i~l~~l~~g~~~~~w~~L~~~~~~~~~~~~~l~v~~~ 156 (158)
T cd04015 85 WNESFHIYCAHYASHVEFTVKDNDVVG--------AQLIGRAYIPVEDLLSGEPVEGWLPILDSNGKPPKPGAKIRVSLQ 156 (158)
T ss_pred cceEEEEEccCCCCEEEEEEEeCCCcC--------CcEEEEEEEEhHHccCCCCcceEEECcCCCCCCCCCCCEEEEEEE
Confidence 999999999888889999999999865 679999999999999888889999998765566556699999999
Q ss_pred Ee
Q 042999 750 FV 751 (1006)
Q Consensus 750 ~~ 751 (1006)
|+
T Consensus 157 f~ 158 (158)
T cd04015 157 FT 158 (158)
T ss_pred EC
Confidence 84
No 14
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=99.83 E-value=5.5e-20 Score=174.88 Aligned_cols=118 Identities=25% Similarity=0.376 Sum_probs=101.4
Q ss_pred EEEEEeeccCCccCccCCCCCCCCCeEEEEEECCEEEEeecccCCCCCeeccEEEEEEeC------CCcEEEEEEEECCC
Q 042999 621 LELGILGARGLLPMKTKNGGKGSTDAYCVAKYGKKWVRTRTITDCFDPRWNEQYTWQVYD------PCTVLTVGVFDNWR 694 (1006)
Q Consensus 621 L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~~~~~rT~~~~~~~nP~wne~~~~~v~~------~~~~l~i~v~d~~~ 694 (1006)
++|+|++|+||++++ . .|.+||||++.++++..||+++++++||+|||.|.|.+.. ....|.|.|||++.
T Consensus 1 ~~V~V~~A~~L~~~d---~-~g~~dpYv~v~l~~~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~ 76 (126)
T cd08682 1 VQVTVLQARGLLCKG---K-SGTNDAYVIIQLGKEKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNL 76 (126)
T ss_pred CEEEEEECcCCcCCC---C-CcCCCceEEEEECCeeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEccc
Confidence 579999999998854 4 7889999999999999999999999999999999999977 45689999999998
Q ss_pred CCcCCCCCCCCceeEEEEEEccccc--CCceEeeEEEeeeeccCCcccccEEEEEEE
Q 042999 695 MFADASEERPDYRIGKIRIRVSTLE--NNKVYTTSYPLLVLLRTGLKKMGEIELAVR 749 (1006)
Q Consensus 695 ~~~~~~~~~~d~~lG~~~i~l~~l~--~~~~~~~~~~L~~~~~~g~~~~G~l~l~~~ 749 (1006)
++ +|++||++.|+|+++. .+.....||+|........+..|+|+|+++
T Consensus 77 ~~-------~d~~iG~~~i~l~~l~~~~~~~~~~W~~L~~~~~~~~~~~Gei~l~~~ 126 (126)
T cd08682 77 LG-------LDKFLGQVSIPLNDLDEDKGRRRTRWFKLESKPGKDDKERGEIEVDIQ 126 (126)
T ss_pred cC-------CCceeEEEEEEHHHhhccCCCcccEEEECcCCCCCCccccceEEEEeC
Confidence 87 7999999999999987 566678999998654333334599999863
No 15
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=99.82 E-value=1.6e-19 Score=200.76 Aligned_cols=124 Identities=19% Similarity=0.308 Sum_probs=110.0
Q ss_pred ccEEEEEEEEecCCCCCCCCCCCCcEEEEEECCe-EEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEeCCCCC
Q 042999 15 VRKLVVEVVDARDLLPKDGQGSSSPYVIADFDGQ-RKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYNDKRYC 93 (1006)
Q Consensus 15 ~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~~-~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~d~~~ 93 (1006)
...|.|.|.+|+||++++..|++||||.|.++++ ..||.++.+++.|.|.|.|.|.+... -+.|.|.|||.| +
T Consensus 4 ~~sl~vki~E~knL~~~~~~g~~D~yC~v~lD~E~v~RT~tv~ksL~PF~gEe~~~~iP~~----F~~l~fYv~D~d-~- 77 (800)
T KOG2059|consen 4 EQSLKVKIGEAKNLPSYGPSGMRDCYCTVNLDQEEVCRTATVEKSLCPFFGEEFYFEIPRT----FRYLSFYVWDRD-L- 77 (800)
T ss_pred ccceeEEEeecccCCCCCCCCCcCcceEEeecchhhhhhhhhhhhcCCccccceEEecCcc----eeeEEEEEeccc-c-
Confidence 4578999999999999999999999999999864 59999999999999999999998875 678999999999 7
Q ss_pred CCCCCCCceeEEEEEeCeeeeeeCCceeEEEEceecCCceeeeEEEEEEEEEEecC
Q 042999 94 NGSGRKNHFLGRVKLCGSQFARRGDEGLVYFPLEKKSVFSWIRGEIGLRIYYYDEL 149 (1006)
Q Consensus 94 ~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~~~ 149 (1006)
++|+.||.+.+.-.+|.. ....+.||.|..-...+.++|+|++++.+.+..
T Consensus 78 ----~~D~~IGKvai~re~l~~-~~~~d~W~~L~~VD~dsEVQG~v~l~l~~~e~~ 128 (800)
T KOG2059|consen 78 ----KRDDIIGKVAIKREDLHM-YPGKDTWFSLQPVDPDSEVQGKVHLELALTEAI 128 (800)
T ss_pred ----ccccccceeeeeHHHHhh-CCCCccceeccccCCChhhceeEEEEEEecccc
Confidence 799999999999888633 335678999998887889999999999988765
No 16
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.82 E-value=1.9e-19 Score=174.94 Aligned_cols=136 Identities=21% Similarity=0.274 Sum_probs=110.2
Q ss_pred EEEEEEeeccCCccCccCCCCCCCCCeEEEEEECCEEEEeecccC-CCCCeeccEEEEEEeCCC-cEEEEEEEECCCCCc
Q 042999 620 ILELGILGARGLLPMKTKNGGKGSTDAYCVAKYGKKWVRTRTITD-CFDPRWNEQYTWQVYDPC-TVLTVGVFDNWRMFA 697 (1006)
Q Consensus 620 ~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~~~~~rT~~~~~-~~nP~wne~~~~~v~~~~-~~l~i~v~d~~~~~~ 697 (1006)
.|+|+|++|++|++++ . +|++||||++.++++..||+++.+ ++||+|||.|.|.+.++. +.|.|.|||++..+
T Consensus 1 ~L~V~Vi~A~~L~~~d---~-~g~sDPYV~v~l~~~~~kTk~~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~~~- 75 (150)
T cd04019 1 YLRVTVIEAQDLVPSD---K-NRVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRVGPN- 75 (150)
T ss_pred CEEEEEEEeECCCCCC---C-CCCCCeEEEEEECCEEeeeEeccCCCCCCcccCcEEEEecCccCCeEEEEEEEecCCC-
Confidence 3899999999999865 4 789999999999999999999977 699999999999998754 58999999999876
Q ss_pred CCCCCCCCceeEEEEEEcccccCC----ceEeeEEEeeeecc-----CCcccccEEEEEEEEecCCCCcccccccCCC
Q 042999 698 DASEERPDYRIGKIRIRVSTLENN----KVYTTSYPLLVLLR-----TGLKKMGEIELAVRFVCPSMLPETSSVYGQP 766 (1006)
Q Consensus 698 ~~~~~~~d~~lG~~~i~l~~l~~~----~~~~~~~~L~~~~~-----~g~~~~G~l~l~~~~~~~~~~~~~~~~~~~p 766 (1006)
+|++||++.|+|+++..+ .....||+|..... +..+..|+|+|.+.|............|...
T Consensus 76 ------~dd~lG~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~~~~~~~~~~~~~~~~ 147 (150)
T cd04019 76 ------KDEPLGRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLDGGYHVLDESTHYSSD 147 (150)
T ss_pred ------CCCeEEEEEEEHHHCcccCCCCccCCceEECcCCCCcccccccCcccccEEEEEEecCcceEeecccccccC
Confidence 789999999999998643 44589999987532 2234459999999999876543333344433
No 17
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=99.81 E-value=2.3e-19 Score=169.40 Aligned_cols=120 Identities=28% Similarity=0.379 Sum_probs=106.4
Q ss_pred EEEEEEeeccCCccCccCCCCCCCCCeEEEEEECC-EEEEeecccCCCCCeeccEEEEEEeCCCcEEEEEEEECCCCCcC
Q 042999 620 ILELGILGARGLLPMKTKNGGKGSTDAYCVAKYGK-KWVRTRTITDCFDPRWNEQYTWQVYDPCTVLTVGVFDNWRMFAD 698 (1006)
Q Consensus 620 ~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~~-~~~rT~~~~~~~nP~wne~~~~~v~~~~~~l~i~v~d~~~~~~~ 698 (1006)
.|+|+|++|+||++++ . .|.+||||++.+++ ...||+++.+++||.|||.|.|.+.++...|.|+|||++..+
T Consensus 1 ~L~v~v~~a~~L~~~d---~-~g~~Dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~l~~~v~D~d~~~-- 74 (121)
T cd04042 1 QLDIHLKEGRNLAARD---R-GGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIEDVTQPLYIKVFDYDRGL-- 74 (121)
T ss_pred CeEEEEEEeeCCCCcC---C-CCCCCCeEEEEECCEEEEEeeeccCCCCCccceeEEEEecCCCCeEEEEEEeCCCCC--
Confidence 3799999999998864 4 78999999999987 678999999999999999999999887889999999999986
Q ss_pred CCCCCCCceeEEEEEEcccccCCceEeeEEEeeeeccCCcccccEEEEEEEEec
Q 042999 699 ASEERPDYRIGKIRIRVSTLENNKVYTTSYPLLVLLRTGLKKMGEIELAVRFVC 752 (1006)
Q Consensus 699 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~l~l~~~~~~ 752 (1006)
+|++||.+.+++.++..+...+.|++|.+... .+..|+|+|+++|++
T Consensus 75 -----~~~~iG~~~~~l~~l~~~~~~~~~~~L~~~~~--~~~~G~l~l~~~~~~ 121 (121)
T cd04042 75 -----TDDFMGSAFVDLSTLELNKPTEVKLKLEDPNS--DEDLGYISLVVTLTP 121 (121)
T ss_pred -----CCcceEEEEEEHHHcCCCCCeEEEEECCCCCC--ccCceEEEEEEEECC
Confidence 79999999999999998888899999976432 345699999999974
No 18
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.81 E-value=1.5e-19 Score=172.14 Aligned_cols=125 Identities=58% Similarity=0.951 Sum_probs=109.2
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEECCeEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEeCCCCCCCC
Q 042999 17 KLVVEVVDARDLLPKDGQGSSSPYVIADFDGQRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYNDKRYCNGS 96 (1006)
Q Consensus 17 ~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~d~~~~~~ 96 (1006)
.|.|+|++|++|.+++..|.+||||++.+++++++|++++++.||+|||.|.|.+..........|.|+|||++.+
T Consensus 1 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~---- 76 (127)
T cd04022 1 KLVVEVVDAQDLMPKDGQGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRS---- 76 (127)
T ss_pred CeEEEEEEeeCCCCCCCCCCcCcEEEEEECCEEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCC----
Confidence 4899999999999999889999999999999999999999999999999999998764333346899999999987
Q ss_pred CC-CCceeEEEEEeCeeeeeeCCceeEEEEceecCCceeeeEEEEEEEEEE
Q 042999 97 GR-KNHFLGRVKLCGSQFARRGDEGLVYFPLEKKSVFSWIRGEIGLRIYYY 146 (1006)
Q Consensus 97 ~~-~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~ 146 (1006)
+ ++++||++.++++++...+....+||+|++.+..++.+|+|.|++.+.
T Consensus 77 -~~~d~~lG~v~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~ 126 (127)
T cd04022 77 -GRRRSFLGRVRISGTSFVPPSEAVVQRYPLEKRGLFSRVRGEIGLKVYIT 126 (127)
T ss_pred -cCCCCeeeEEEEcHHHcCCCCCccceEeEeeeCCCCCCccEEEEEEEEEc
Confidence 5 799999999999997645566679999998766666799999999875
No 19
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=99.79 E-value=1.1e-18 Score=163.96 Aligned_cols=119 Identities=23% Similarity=0.359 Sum_probs=102.9
Q ss_pred EEEEEeeccCCccCccCCCCCCCCCeEEEEEECCE-EEEeecccCCCCCeeccEEEEEEeCCCcEEEEEEEECCCCCcCC
Q 042999 621 LELGILGARGLLPMKTKNGGKGSTDAYCVAKYGKK-WVRTRTITDCFDPRWNEQYTWQVYDPCTVLTVGVFDNWRMFADA 699 (1006)
Q Consensus 621 L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~~~-~~rT~~~~~~~nP~wne~~~~~v~~~~~~l~i~v~d~~~~~~~~ 699 (1006)
|.|.|++|+||++++ +. .|.+||||.|.++++ ..+|+++++|+||.|||+|.|++.+....|.|.|||++.++
T Consensus 2 l~v~v~~a~~L~~~~--~~-~g~sDpYv~v~l~~~~~~kT~v~~kt~~P~WnE~F~f~v~~~~~~l~~~v~d~~~~~--- 75 (121)
T cd08401 2 LKIKIGEAKNLPPRS--GP-NKMRDCYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFEIPRTFRHLSFYIYDRDVLR--- 75 (121)
T ss_pred eEEEEEEccCCCCCC--CC-CCCcCcEEEEEECCccEEEeeEEECCCCCccCCeEEEEcCCCCCEEEEEEEECCCCC---
Confidence 689999999999864 23 678999999999865 57999999999999999999999876679999999999887
Q ss_pred CCCCCCceeEEEEEEcccccCCceEeeEEEeeeeccCCcccccEEEEEEEE
Q 042999 700 SEERPDYRIGKIRIRVSTLENNKVYTTSYPLLVLLRTGLKKMGEIELAVRF 750 (1006)
Q Consensus 700 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~l~l~~~~ 750 (1006)
+|++||++.++++++..+...+.||+|......+. ..|+|+|+++|
T Consensus 76 ----~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~-~~G~i~l~~~~ 121 (121)
T cd08401 76 ----RDSVIGKVAIKKEDLHKYYGKDTWFPLQPVDADSE-VQGKVHLELRL 121 (121)
T ss_pred ----CCceEEEEEEEHHHccCCCCcEeeEEEEccCCCCc-ccEEEEEEEEC
Confidence 89999999999999988877899999986544332 35999999875
No 20
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=99.79 E-value=1.5e-18 Score=164.38 Aligned_cols=120 Identities=23% Similarity=0.380 Sum_probs=102.2
Q ss_pred cEEEEEEEeeccCCccCccCCCCCCCCCeEEEEEECCEE-EEeecccCCCCCeeccEEEEEEeCCC-cEEEEEEEECCCC
Q 042999 618 VGILELGILGARGLLPMKTKNGGKGSTDAYCVAKYGKKW-VRTRTITDCFDPRWNEQYTWQVYDPC-TVLTVGVFDNWRM 695 (1006)
Q Consensus 618 ~g~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~~~~-~rT~~~~~~~nP~wne~~~~~v~~~~-~~l~i~v~d~~~~ 695 (1006)
...|+|+|++|+||++ .+.+||||.|.+++.. .||++ +++.||.|||.|.|++..+. ..++|.|||++..
T Consensus 3 ~~~L~V~Vi~A~~L~~-------~~~~DPYv~v~l~~~~~~kT~v-~~~~nP~WnE~f~f~~~~~~~~~l~v~v~d~~~~ 74 (126)
T cd08400 3 VRSLQLNVLEAHKLPV-------KHVPHPYCVISLNEVKVARTKV-REGPNPVWSEEFVFDDLPPDVNSFTISLSNKAKR 74 (126)
T ss_pred eeEEEEEEEEeeCCCC-------CCCCCeeEEEEECCEeEEEeec-CCCCCCccCCEEEEecCCCCcCEEEEEEEECCCC
Confidence 4579999999999976 3468999999998754 68887 56899999999999976654 5799999999987
Q ss_pred CcCCCCCCCCceeEEEEEEcccccCCceEeeEEEeeeeccCCcccccEEEEEEEEec
Q 042999 696 FADASEERPDYRIGKIRIRVSTLENNKVYTTSYPLLVLLRTGLKKMGEIELAVRFVC 752 (1006)
Q Consensus 696 ~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~l~l~~~~~~ 752 (1006)
+ +|++||++.|+|.++..+...+.||+|......+.+..|+|+|+++|..
T Consensus 75 ~-------~d~~iG~v~i~l~~l~~~~~~~~W~~L~~~~~~~~~~~G~i~l~l~~~~ 124 (126)
T cd08400 75 S-------KDSEIAEVTVQLSKLQNGQETDEWYPLSSASPLKGGEWGSLRIRARYSH 124 (126)
T ss_pred C-------CCCeEEEEEEEHhHccCCCcccEeEEcccCCCCCCCcCcEEEEEEEEEc
Confidence 6 8999999999999999988889999998765434445699999999975
No 21
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=99.79 E-value=8.2e-19 Score=166.80 Aligned_cols=122 Identities=30% Similarity=0.437 Sum_probs=103.0
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEECCeEEEeeCcCCCCCCeeeeEEEEEeeCC--CCCCCceEEEEEEeCCCCCCC
Q 042999 18 LVVEVVDARDLLPKDGQGSSSPYVIADFDGQRKRTSTKFRDLNPVWNEPLEFIVSDP--KNMDCEELEIEVYNDKRYCNG 95 (1006)
Q Consensus 18 L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~--~~~~~~~L~i~V~d~d~~~~~ 95 (1006)
++|+|++|+||+.++..|.+||||++.+++++++|+++++++||+|||+|.|.+... .......|.|+|||++.+
T Consensus 1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~~~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~--- 77 (126)
T cd08682 1 VQVTVLQARGLLCKGKSGTNDAYVIIQLGKEKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLL--- 77 (126)
T ss_pred CEEEEEECcCCcCCCCCcCCCceEEEEECCeeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEcccc---
Confidence 579999999999999889999999999999999999999999999999999998762 112256899999999998
Q ss_pred CCCCCceeEEEEEeCeeeee-eCCceeEEEEceecC-CceeeeEEEEEEEE
Q 042999 96 SGRKNHFLGRVKLCGSQFAR-RGDEGLVYFPLEKKS-VFSWIRGEIGLRIY 144 (1006)
Q Consensus 96 ~~~~d~~lG~~~v~l~~l~~-~~~~~~~w~~L~~~~-~~~~~~G~i~l~~~ 144 (1006)
++|++||++.++++++.. .+....+||+|.+.. ...+..|+|+|+++
T Consensus 78 --~~d~~iG~~~i~l~~l~~~~~~~~~~W~~L~~~~~~~~~~~Gei~l~~~ 126 (126)
T cd08682 78 --GLDKFLGQVSIPLNDLDEDKGRRRTRWFKLESKPGKDDKERGEIEVDIQ 126 (126)
T ss_pred --CCCceeEEEEEEHHHhhccCCCcccEEEECcCCCCCCccccceEEEEeC
Confidence 789999999999999752 345566899998533 33456899999873
No 22
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=99.78 E-value=3.9e-18 Score=163.27 Aligned_cols=119 Identities=28% Similarity=0.476 Sum_probs=102.1
Q ss_pred CCCcEEEEEEEeeccCCccCccCCCCCCCCCeEEEEEECCEEEEeecccCCCCCeeccEEEEEEeCCC-cEEEEEEEECC
Q 042999 615 KPPVGILELGILGARGLLPMKTKNGGKGSTDAYCVAKYGKKWVRTRTITDCFDPRWNEQYTWQVYDPC-TVLTVGVFDNW 693 (1006)
Q Consensus 615 ~~~~g~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~~~~~rT~~~~~~~nP~wne~~~~~v~~~~-~~l~i~v~d~~ 693 (1006)
...+|.|+|+|++|+||++++ . .|.+||||++.++++..||+++++++||.|||.|.|.+.++. ..|.|+|||+|
T Consensus 11 ~~~~G~L~V~Vi~A~~L~~~d---~-~g~~DPYv~v~~~~~~~kT~vi~~t~nP~Wne~f~f~v~~~~~~~l~i~V~D~d 86 (136)
T cd08375 11 ASGIGRLMVVIVEGRDLKPCN---S-NGKSDPYCEVSMGSQEHKTKVVSDTLNPKWNSSMQFFVKDLEQDVLCITVFDRD 86 (136)
T ss_pred CCCcEEEEEEEEEeeCCCCCC---C-CCCcCcEEEEEECCEeeeccccCCCCCCccCceEEEEecCccCCEEEEEEEECC
Confidence 457899999999999998864 4 789999999999999999999999999999999999998754 68999999999
Q ss_pred CCCcCCCCCCCCceeEEEEEEcccccC-----CceEeeEEEeeeeccCCcccccEEEEEEEE
Q 042999 694 RMFADASEERPDYRIGKIRIRVSTLEN-----NKVYTTSYPLLVLLRTGLKKMGEIELAVRF 750 (1006)
Q Consensus 694 ~~~~~~~~~~~d~~lG~~~i~l~~l~~-----~~~~~~~~~L~~~~~~g~~~~G~l~l~~~~ 750 (1006)
.++ +|++||++.|++.++.. ......|.+|. + +..|+|+|++.|
T Consensus 87 ~~~-------~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~-----~-~~~g~i~l~~~~ 135 (136)
T cd08375 87 FFS-------PDDFLGRTEIRVADILKETKESKGPITKRLLLH-----E-VPTGEVVVKLDL 135 (136)
T ss_pred CCC-------CCCeeEEEEEEHHHhccccccCCCcEEEEeccc-----c-ccceeEEEEEEe
Confidence 877 89999999999999876 23345666663 2 234999999987
No 23
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=99.77 E-value=4e-18 Score=160.73 Aligned_cols=118 Identities=26% Similarity=0.422 Sum_probs=103.8
Q ss_pred EEEEEEEeeccCCccCccCCCCCCCCCeEEEEEECCEEEEeecccCCCCCeeccEEEEEEeCCCcEEEEEEEECCCCCcC
Q 042999 619 GILELGILGARGLLPMKTKNGGKGSTDAYCVAKYGKKWVRTRTITDCFDPRWNEQYTWQVYDPCTVLTVGVFDNWRMFAD 698 (1006)
Q Consensus 619 g~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~~~~~rT~~~~~~~nP~wne~~~~~v~~~~~~l~i~v~d~~~~~~~ 698 (1006)
|.|+|+|++|+||+.++ . .+.+||||++.+++...+|++++++.||.|||+|.|++.+....|.|+|||++..+
T Consensus 1 g~l~v~v~~a~~L~~~~---~-~~~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~~~~~~~~~~l~~~v~d~~~~~-- 74 (119)
T cd08377 1 GFLQVKVIRASGLAAAD---I-GGKSDPFCVLELVNARLQTHTIYKTLNPEWNKIFTFPIKDIHDVLEVTVYDEDKDK-- 74 (119)
T ss_pred CEEEEEEEeeeCCCCCC---C-CCCCCcEEEEEECCEeeecceecCCcCCccCcEEEEEecCcCCEEEEEEEECCCCC--
Confidence 78999999999998854 4 77899999999999999999999999999999999999877789999999999876
Q ss_pred CCCCCCCceeEEEEEEcccccCCceEeeEEEeeeeccCCcccccEEEEEEEE
Q 042999 699 ASEERPDYRIGKIRIRVSTLENNKVYTTSYPLLVLLRTGLKKMGEIELAVRF 750 (1006)
Q Consensus 699 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~l~l~~~~ 750 (1006)
++++||++.+++.++..+. ..||+|......+. ..|+|.+++.|
T Consensus 75 -----~~~~iG~~~~~l~~~~~~~--~~~~~l~~~~~~~~-~~G~i~l~~~~ 118 (119)
T cd08377 75 -----KPEFLGKVAIPLLSIKNGE--RKWYALKDKKLRTR-AKGSILLEMDV 118 (119)
T ss_pred -----CCceeeEEEEEHHHCCCCC--ceEEECcccCCCCc-eeeEEEEEEEe
Confidence 7899999999999998776 68999976543332 35999999987
No 24
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=99.77 E-value=3.9e-18 Score=159.87 Aligned_cols=114 Identities=21% Similarity=0.422 Sum_probs=102.6
Q ss_pred EEEEEEeeccCCccCccCCCCCCCCCeEEEEEECCEEEEeecccCCCCCeeccEEEEEEeCC-CcEEEEEEEECCCCCcC
Q 042999 620 ILELGILGARGLLPMKTKNGGKGSTDAYCVAKYGKKWVRTRTITDCFDPRWNEQYTWQVYDP-CTVLTVGVFDNWRMFAD 698 (1006)
Q Consensus 620 ~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~~~~~rT~~~~~~~nP~wne~~~~~v~~~-~~~l~i~v~d~~~~~~~ 698 (1006)
.|+|+|++|+||++++ . .|.+||||+++++++..+|+++.+++||.|||.|.|.+.++ ...|.|+|||++..+
T Consensus 1 ~~~V~v~~a~~L~~~~---~-~~~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~~~-- 74 (116)
T cd08376 1 VVTIVLVEGKNLPPMD---D-NGLSDPYVKFRLGNEKYKSKVCSKTLNPQWLEQFDLHLFDDQSQILEIEVWDKDTGK-- 74 (116)
T ss_pred CEEEEEEEEECCCCCC---C-CCCCCcEEEEEECCEeEecccccCCCCCceeEEEEEEecCCCCCEEEEEEEECCCCC--
Confidence 3789999999998864 4 77899999999999999999999999999999999999876 679999999999876
Q ss_pred CCCCCCCceeEEEEEEcccccCCceEeeEEEeeeeccCCcccccEEEEEEEEe
Q 042999 699 ASEERPDYRIGKIRIRVSTLENNKVYTTSYPLLVLLRTGLKKMGEIELAVRFV 751 (1006)
Q Consensus 699 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~l~l~~~~~ 751 (1006)
+|++||++.++|.++..+.....||+|.. ..|+|++++.|+
T Consensus 75 -----~~~~iG~~~~~l~~l~~~~~~~~w~~L~~-------~~G~~~~~~~~~ 115 (116)
T cd08376 75 -----KDEFIGRCEIDLSALPREQTHSLELELED-------GEGSLLLLLTLT 115 (116)
T ss_pred -----CCCeEEEEEEeHHHCCCCCceEEEEEccC-------CCcEEEEEEEec
Confidence 89999999999999998888899999954 139999998886
No 25
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=99.77 E-value=4.2e-18 Score=161.82 Aligned_cols=120 Identities=23% Similarity=0.346 Sum_probs=103.5
Q ss_pred EEEEEeeccCCccCccCCCCCCCCCeEEEEEEC--CEEEEeecccCCCCCeeccEEEEEEeCCCcEEEEEEEECCCCCcC
Q 042999 621 LELGILGARGLLPMKTKNGGKGSTDAYCVAKYG--KKWVRTRTITDCFDPRWNEQYTWQVYDPCTVLTVGVFDNWRMFAD 698 (1006)
Q Consensus 621 L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~--~~~~rT~~~~~~~nP~wne~~~~~v~~~~~~l~i~v~d~~~~~~~ 698 (1006)
|.|+|++|+||+. . .|.+||||++.++ .+..||+++.+++||+|||.|.|.+......|.|+|||++..+
T Consensus 1 l~v~v~~A~~L~~-----~-~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~~~~-- 72 (126)
T cd08678 1 LLVKNIKANGLSE-----A-AGSSNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFELSPNSKELLFEVYDNGKKS-- 72 (126)
T ss_pred CEEEEEEecCCCC-----C-CCCcCCEEEEEECCCCcEEEeEEEecCCCCccCceEEEEeCCCCCEEEEEEEECCCCC--
Confidence 5799999999976 2 7899999999997 4678999999999999999999999766778999999999876
Q ss_pred CCCCCCCceeEEEEEEcccccCCceEeeEEEeeeeccCCcccccEEEEEEEEecC
Q 042999 699 ASEERPDYRIGKIRIRVSTLENNKVYTTSYPLLVLLRTGLKKMGEIELAVRFVCP 753 (1006)
Q Consensus 699 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~l~l~~~~~~~ 753 (1006)
+|++||++.|++.++..+.....||+|......+.+..|+|++++.|...
T Consensus 73 -----~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~l~l~~~~~~~ 122 (126)
T cd08678 73 -----DSKFLGLAIVPFDELRKNPSGRQIFPLQGRPYEGDSVSGSITVEFLFMEP 122 (126)
T ss_pred -----CCceEEEEEEeHHHhccCCceeEEEEecCCCCCCCCcceEEEEEEEEecc
Confidence 79999999999999988776689999976533233446999999999864
No 26
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.77 E-value=2.8e-18 Score=163.37 Aligned_cols=121 Identities=31% Similarity=0.472 Sum_probs=102.3
Q ss_pred EEEEEEeeccCCccCccCCCCCCCCCeEEEEEECCEEEEeecccCCCCCeeccEEEEEEeCCC----cEEEEEEEECCCC
Q 042999 620 ILELGILGARGLLPMKTKNGGKGSTDAYCVAKYGKKWVRTRTITDCFDPRWNEQYTWQVYDPC----TVLTVGVFDNWRM 695 (1006)
Q Consensus 620 ~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~~~~~rT~~~~~~~nP~wne~~~~~v~~~~----~~l~i~v~d~~~~ 695 (1006)
.|+|+|++|++|++.+ . .|.+||||++.++++..||+++.+++||.|||.|.|.+.++. ..|.|+|||++.+
T Consensus 1 ~L~V~vi~A~~L~~~d---~-~g~~dpyv~v~~~~~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~ 76 (127)
T cd04022 1 KLVVEVVDAQDLMPKD---G-QGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRS 76 (127)
T ss_pred CeEEEEEEeeCCCCCC---C-CCCcCcEEEEEECCEEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCC
Confidence 3899999999998864 4 788999999999999999999999999999999999998643 4799999999876
Q ss_pred CcCCCCCCCCceeEEEEEEccccc-CCceEeeEEEeeeeccCCcccccEEEEEEEEe
Q 042999 696 FADASEERPDYRIGKIRIRVSTLE-NNKVYTTSYPLLVLLRTGLKKMGEIELAVRFV 751 (1006)
Q Consensus 696 ~~~~~~~~~d~~lG~~~i~l~~l~-~~~~~~~~~~L~~~~~~g~~~~G~l~l~~~~~ 751 (1006)
+ .+|++||++.|+++++. .+.....||+|......+ +..|+|+|++.|+
T Consensus 77 ~------~~d~~lG~v~i~l~~l~~~~~~~~~w~~L~~~~~~~-~~~G~l~l~~~~~ 126 (127)
T cd04022 77 G------RRRSFLGRVRISGTSFVPPSEAVVQRYPLEKRGLFS-RVRGEIGLKVYIT 126 (127)
T ss_pred c------CCCCeeeEEEEcHHHcCCCCCccceEeEeeeCCCCC-CccEEEEEEEEEc
Confidence 3 15889999999999987 456668999998643333 2459999999886
No 27
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=99.77 E-value=2.3e-18 Score=161.98 Aligned_cols=116 Identities=27% Similarity=0.441 Sum_probs=100.1
Q ss_pred EEEEEEEeeccCCccCccCCCCCCCCCeEEEEEECCEEEEeecccC-CCCCeeccEEEEEEeC-CCcEEEEEEEECCCCC
Q 042999 619 GILELGILGARGLLPMKTKNGGKGSTDAYCVAKYGKKWVRTRTITD-CFDPRWNEQYTWQVYD-PCTVLTVGVFDNWRMF 696 (1006)
Q Consensus 619 g~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~~~~~rT~~~~~-~~nP~wne~~~~~v~~-~~~~l~i~v~d~~~~~ 696 (1006)
|.|+|+|++|++|++.+ . .|++||||++.+++...||+++.+ ++||+|||.|.|.+.. ....|.|+|||++..
T Consensus 1 g~L~V~v~~A~~L~~~~---~-~~~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~- 75 (118)
T cd08681 1 GTLVVVVLKARNLPNKR---K-LDKQDPYCVLRIGGVTKKTKTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDDKR- 75 (118)
T ss_pred CEEEEEEEEccCCCCCC---c-CCCCCceEEEEECCCccccccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCC-
Confidence 78999999999998854 4 789999999999999999999865 7999999999999987 456899999999864
Q ss_pred cCCCCCCCCceeEEEEEEcccccCCceEeeEEEeeeeccCCcccccEEEEEEEE
Q 042999 697 ADASEERPDYRIGKIRIRVSTLENNKVYTTSYPLLVLLRTGLKKMGEIELAVRF 750 (1006)
Q Consensus 697 ~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~l~l~~~~ 750 (1006)
.|++||++.+++.++..+.....||+|... | +..|+|+|+++|
T Consensus 76 -------~~~~iG~~~~~l~~~~~~~~~~~w~~L~~~---~-~~~G~i~l~l~f 118 (118)
T cd08681 76 -------KPDLIGDTEVDLSPALKEGEFDDWYELTLK---G-RYAGEVYLELTF 118 (118)
T ss_pred -------CCcceEEEEEecHHHhhcCCCCCcEEeccC---C-cEeeEEEEEEEC
Confidence 388999999999998777666899999642 3 345999999886
No 28
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.77 E-value=5.3e-18 Score=159.20 Aligned_cols=118 Identities=52% Similarity=1.019 Sum_probs=104.8
Q ss_pred eEEEEEEEeeCCCC-CCCcEEEEEECCeeeeeeEeeccCCCCCCCCeeceEEEEeccCCCCCCCEEEEEEEcCCC--CCc
Q 042999 297 YLFVKIRKARGLVP-NEAPYVKIRTSSHYKKSKLASYRACDPHDSPEWNQVFALFHNKNDSVSATLEITVWDSPT--ENF 373 (1006)
Q Consensus 297 ~l~V~v~~a~~l~~-~~dpyv~v~~~~~~~~T~~~~~~~~~~~~nP~wne~f~f~~~~~~~~~~~l~i~V~D~~~--d~~ 373 (1006)
||.|+|++|++|+. .+||||++.++++..+|+++ +++.||+|||.|.|.+..+. ...|.|+|||++. +++
T Consensus 1 ~L~V~Vi~a~~L~~~~~Dpyv~v~l~~~~~kT~v~-----~~t~nP~Wne~F~f~~~~~~--~~~L~~~v~d~d~~~~~~ 73 (121)
T cd08378 1 YLYVRVVKARGLPANSNDPVVEVKLGNYKGSTKAI-----ERTSNPEWNQVFAFSKDRLQ--GSTLEVSVWDKDKAKDDF 73 (121)
T ss_pred CEEEEEEEecCCCcccCCCEEEEEECCcccccccc-----CCCCCCccceEEEEEcCCCc--CCEEEEEEEeCCCCcCce
Confidence 58899999999976 78999999999999999999 99999999999999988765 6899999999874 899
Q ss_pred cEEEEEeCCcCCCCCCCCCCCcceeEEcccCCCCCCcceeeEEEEEEEeec
Q 042999 374 LGGVCFDLSDVPVRDPPDSPLAPQWYRLEGEASDQNNRVSGDIQLAVWIGT 424 (1006)
Q Consensus 374 lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~~~g~l~~~~~~~~ 424 (1006)
||.+.++++++..+.+.+....++||+|.+..+ ++.+|+|++++|+|+
T Consensus 74 lG~~~i~l~~l~~~~~~~~~~~~~W~~L~~~~~---~~~~G~i~l~~~~~~ 121 (121)
T cd08378 74 LGGVCFDLSEVPTRVPPDSPLAPQWYRLEDKKG---GRVGGELMLAVWFGT 121 (121)
T ss_pred eeeEEEEhHhCcCCCCCCCCCCcceEEccCCCC---CccceEEEEEEEecC
Confidence 999999999998765555566789999998864 578899999999974
No 29
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.76 E-value=7.4e-18 Score=157.63 Aligned_cols=119 Identities=27% Similarity=0.420 Sum_probs=98.1
Q ss_pred EEEEEEEecC---CCCCCCCCCCCcEEEEEECCeEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEeCCCCC-
Q 042999 18 LVVEVVDARD---LLPKDGQGSSSPYVIADFDGQRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYNDKRYC- 93 (1006)
Q Consensus 18 L~V~v~~a~~---L~~~~~~g~~dPyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~d~~~- 93 (1006)
|+|+|++|++ |..+|..|++||||++.+++++.+|+++++++||+|||+|.|.+... ...|.|+|||++..+
T Consensus 2 L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~~~~rTk~~~~~~nP~WnE~f~f~v~~~----~~~l~v~V~d~d~~~~ 77 (126)
T cd08379 2 LEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGPKWVRTRTVEDSSNPRWNEQYTWPVYDP----CTVLTVGVFDNSQSHW 77 (126)
T ss_pred eEEEEEEeECCccccccccCCCCCeeEEEEECCEEeEcCcccCCCCCcceeEEEEEecCC----CCEEEEEEEECCCccc
Confidence 8899999999 88899999999999999999999999999999999999999999764 348999999998860
Q ss_pred CCCCCCCceeEEEEEeCeeeeeeCCceeEEEEceecCC-ceeeeEEEEE
Q 042999 94 NGSGRKNHFLGRVKLCGSQFARRGDEGLVYFPLEKKSV-FSWIRGEIGL 141 (1006)
Q Consensus 94 ~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~~-~~~~~G~i~l 141 (1006)
....++|++||++.++++.+ ..+.....||+|..... ..+..|+|++
T Consensus 78 ~~~~~~dd~lG~~~i~l~~l-~~~~~~~~~~~L~~~~~~~~~~~g~l~~ 125 (126)
T cd08379 78 KEAVQPDVLIGKVRIRLSTL-EDDRVYAHSYPLLSLNPSGVKKMGELEC 125 (126)
T ss_pred cccCCCCceEEEEEEEHHHc-cCCCEEeeEEEeEeCCCCCccCCcEEEe
Confidence 00002799999999999995 55666678999986432 2334677764
No 30
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=99.76 E-value=9.7e-18 Score=158.26 Aligned_cols=120 Identities=26% Similarity=0.420 Sum_probs=104.7
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEECC-eEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEeCCCCCCC
Q 042999 17 KLVVEVVDARDLLPKDGQGSSSPYVIADFDG-QRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYNDKRYCNG 95 (1006)
Q Consensus 17 ~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~-~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~d~~~~~ 95 (1006)
+|+|+|++|++|+.++..|.+||||++.+++ ..++|+++.++.||+|||+|.|.+... ...|.|+|||++..
T Consensus 1 ~L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~----~~~l~~~v~D~d~~--- 73 (121)
T cd04042 1 QLDIHLKEGRNLAARDRGGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIEDV----TQPLYIKVFDYDRG--- 73 (121)
T ss_pred CeEEEEEEeeCCCCcCCCCCCCCeEEEEECCEEEEEeeeccCCCCCccceeEEEEecCC----CCeEEEEEEeCCCC---
Confidence 4889999999999999889999999999987 578999999999999999999998654 46899999999998
Q ss_pred CCCCCceeEEEEEeCeeeeeeCCceeEEEEceecCCceeeeEEEEEEEEEEe
Q 042999 96 SGRKNHFLGRVKLCGSQFARRGDEGLVYFPLEKKSVFSWIRGEIGLRIYYYD 147 (1006)
Q Consensus 96 ~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~ 147 (1006)
+++++||.+.++++++ ..+.....|++|.+.+. .+..|+|.+.+++.+
T Consensus 74 --~~~~~iG~~~~~l~~l-~~~~~~~~~~~L~~~~~-~~~~G~l~l~~~~~~ 121 (121)
T cd04042 74 --LTDDFMGSAFVDLSTL-ELNKPTEVKLKLEDPNS-DEDLGYISLVVTLTP 121 (121)
T ss_pred --CCCcceEEEEEEHHHc-CCCCCeEEEEECCCCCC-ccCceEEEEEEEECC
Confidence 7999999999999996 45566678999986553 346899999999864
No 31
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=99.75 E-value=1.1e-17 Score=160.06 Aligned_cols=123 Identities=21% Similarity=0.383 Sum_probs=103.7
Q ss_pred EEEEEEEeeccCCccCccCCCCCCCCCeEEEEEECCEEEEeecccCCCCCeeccEEEEEEeC-CCcEEEEEEEECCCCCc
Q 042999 619 GILELGILGARGLLPMKTKNGGKGSTDAYCVAKYGKKWVRTRTITDCFDPRWNEQYTWQVYD-PCTVLTVGVFDNWRMFA 697 (1006)
Q Consensus 619 g~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~~~~~rT~~~~~~~nP~wne~~~~~v~~-~~~~l~i~v~d~~~~~~ 697 (1006)
|.|+|+|++|+||++.+. .. .|.+||||++.++++..+|+++++++||.|||.|.|++.+ ....|.|+|||++..+
T Consensus 1 g~l~v~v~~a~~L~~~~~-~~-~~~~dPyv~v~~~~~~~kT~~~~~t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~~~~- 77 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDR-SG-KGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPIFSAQNQLLKLILWDKDRFA- 77 (128)
T ss_pred CEEEEEEEEeeCCCcccC-CC-CCCcCCeEEEEECCEEEecceecCCcCCccCCcEEEEecCCCCCEEEEEEEECCCCC-
Confidence 789999999999988652 12 5789999999999999999999999999999999999987 5679999999999876
Q ss_pred CCCCCCCCceeEEEEEEccccc---CCceEeeEEEeeeeccC-CcccccEEEEEEEE
Q 042999 698 DASEERPDYRIGKIRIRVSTLE---NNKVYTTSYPLLVLLRT-GLKKMGEIELAVRF 750 (1006)
Q Consensus 698 ~~~~~~~d~~lG~~~i~l~~l~---~~~~~~~~~~L~~~~~~-g~~~~G~l~l~~~~ 750 (1006)
+|++||.+.|++.++. .......||+|.+.... .....|+|+|++.|
T Consensus 78 ------~~~~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~~~G~i~l~~~~ 128 (128)
T cd04024 78 ------GKDYLGEFDIALEEVFADGKTGQSDKWITLKSTRPGKTSVVSGEIHLQFSW 128 (128)
T ss_pred ------CCCcceEEEEEHHHhhcccccCccceeEEccCcccCccccccceEEEEEEC
Confidence 7899999999999987 23445799999875332 22346999998865
No 32
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=99.74 E-value=1.7e-17 Score=155.70 Aligned_cols=118 Identities=20% Similarity=0.370 Sum_probs=101.2
Q ss_pred EEEEEEEecCCCCCC-CCCCCCcEEEEEECCe-EEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEeCCCCCCC
Q 042999 18 LVVEVVDARDLLPKD-GQGSSSPYVIADFDGQ-RKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYNDKRYCNG 95 (1006)
Q Consensus 18 L~V~v~~a~~L~~~~-~~g~~dPyv~v~~~~~-~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~d~~~~~ 95 (1006)
|.|+|++|+||+.++ ..|.+||||.+.++++ .++|+++++|+||+|||+|.|.+... ...|.|.|||++.+
T Consensus 2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~~~~~kT~v~~kt~~P~WnE~F~f~v~~~----~~~l~~~v~d~~~~--- 74 (121)
T cd08401 2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFEIPRT----FRHLSFYIYDRDVL--- 74 (121)
T ss_pred eEEEEEEccCCCCCCCCCCCcCcEEEEEECCccEEEeeEEECCCCCccCCeEEEEcCCC----CCEEEEEEEECCCC---
Confidence 679999999999874 4578999999999865 58999999999999999999999763 35899999999998
Q ss_pred CCCCCceeEEEEEeCeeeeeeCCceeEEEEceecCCceeeeEEEEEEEEE
Q 042999 96 SGRKNHFLGRVKLCGSQFARRGDEGLVYFPLEKKSVFSWIRGEIGLRIYY 145 (1006)
Q Consensus 96 ~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~ 145 (1006)
+++++||.+.++++++. .+.....||+|++....++.+|+|++++.+
T Consensus 75 --~~~~~iG~~~i~l~~l~-~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~ 121 (121)
T cd08401 75 --RRDSVIGKVAIKKEDLH-KYYGKDTWFPLQPVDADSEVQGKVHLELRL 121 (121)
T ss_pred --CCCceEEEEEEEHHHcc-CCCCcEeeEEEEccCCCCcccEEEEEEEEC
Confidence 78999999999999964 455567899999765555678999998764
No 33
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.74 E-value=1.4e-17 Score=160.28 Aligned_cols=119 Identities=24% Similarity=0.378 Sum_probs=100.8
Q ss_pred EEEEEEeeccCCccCccCCCCCCCCCeEEEEEECCE-------EEEeecccCCCCCeeccEEEEEEeCCCcEEEEEEEEC
Q 042999 620 ILELGILGARGLLPMKTKNGGKGSTDAYCVAKYGKK-------WVRTRTITDCFDPRWNEQYTWQVYDPCTVLTVGVFDN 692 (1006)
Q Consensus 620 ~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~~~-------~~rT~~~~~~~nP~wne~~~~~v~~~~~~l~i~v~d~ 692 (1006)
.|+|+|++|+||++++ . .|.+||||++.+++. ..+|+++++++||.|||+|.|.+......|.|+|||+
T Consensus 1 ~L~v~Vi~a~~L~~~d---~-~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~ 76 (133)
T cd04033 1 ILRVKVLAGIDLAKKD---I-FGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNPREHRLLFEVFDE 76 (133)
T ss_pred CEEEEEEEeECCCccc---C-CCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcCCCCEEEEEEEEC
Confidence 3899999999998754 4 788999999999654 5799999999999999999999977677899999999
Q ss_pred CCCCcCCCCCCCCceeEEEEEEcccccCCce------EeeEEEeeeeccCCcccccEEEEEEEE
Q 042999 693 WRMFADASEERPDYRIGKIRIRVSTLENNKV------YTTSYPLLVLLRTGLKKMGEIELAVRF 750 (1006)
Q Consensus 693 ~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~------~~~~~~L~~~~~~g~~~~G~l~l~~~~ 750 (1006)
+.++ +|++||.+.|++.++..+.. ...||+|......+ +..|+|+|++.|
T Consensus 77 ~~~~-------~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~-~~~G~l~~~~~~ 132 (133)
T cd04033 77 NRLT-------RDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRSSKS-RVKGHLRLYMAY 132 (133)
T ss_pred CCCC-------CCCeeEEEEEEHHHCCCcCccccccccchheeeeecCCCC-cceeEEEEEEee
Confidence 9887 79999999999999876543 35899998654444 345999999987
No 34
>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=99.74 E-value=6.1e-18 Score=159.06 Aligned_cols=94 Identities=32% Similarity=0.596 Sum_probs=88.5
Q ss_pred ccEEEEEEEEecCCCCCCCCCCCCcEEEEEECCeEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEeCCCCCC
Q 042999 15 VRKLVVEVVDARDLLPKDGQGSSSPYVIADFDGQRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYNDKRYCN 94 (1006)
Q Consensus 15 ~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~d~~~~ 94 (1006)
.|.|+|+|++|.+|..+|..+++||||++.+++|+.+|+++++++||+|||.|.|.+.++ ...|.+.|||+|.+
T Consensus 5 vGLL~v~v~~g~~L~~rD~~~sSDPyVVl~lg~q~lkT~~v~~n~NPeWNe~ltf~v~d~----~~~lkv~VyD~D~f-- 78 (168)
T KOG1030|consen 5 VGLLRVRVKRGKNLAIRDFLGSSDPYVVLELGNQKLKTRVVYKNLNPEWNEELTFTVKDP----NTPLKVTVYDKDTF-- 78 (168)
T ss_pred ceEEEEEEEeecCeeeeccccCCCCeEEEEECCeeeeeeeecCCCCCcccceEEEEecCC----CceEEEEEEeCCCC--
Confidence 579999999999999999889999999999999999999999999999999999999997 67899999999999
Q ss_pred CCCCCCceeEEEEEeCeeeeeeC
Q 042999 95 GSGRKNHFLGRVKLCGSQFARRG 117 (1006)
Q Consensus 95 ~~~~~d~~lG~~~v~l~~l~~~~ 117 (1006)
++|||||.++|++..++...
T Consensus 79 ---s~dD~mG~A~I~l~p~~~~~ 98 (168)
T KOG1030|consen 79 ---SSDDFMGEATIPLKPLLEAQ 98 (168)
T ss_pred ---CcccccceeeeccHHHHHHh
Confidence 89999999999999976543
No 35
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=99.74 E-value=2.5e-17 Score=155.12 Aligned_cols=117 Identities=24% Similarity=0.350 Sum_probs=99.6
Q ss_pred EEEEEeeccCCccCccCCCCCCCCCeEEEEEECCEE-EEeecccCCCCCeeccEEEEEEeCCCcEEEEEEEECCCCCcCC
Q 042999 621 LELGILGARGLLPMKTKNGGKGSTDAYCVAKYGKKW-VRTRTITDCFDPRWNEQYTWQVYDPCTVLTVGVFDNWRMFADA 699 (1006)
Q Consensus 621 L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~~~~-~rT~~~~~~~nP~wne~~~~~v~~~~~~l~i~v~d~~~~~~~~ 699 (1006)
|.|+|++|+||++++ . .|++||||++.++++. .||+++++++||.|||.|.|++.+....|.|.|||++.++
T Consensus 2 l~v~vi~a~~L~~~d---~-~g~~DPYv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~~~~~l~v~v~d~~~~~--- 74 (121)
T cd04054 2 LYIRIVEGKNLPAKD---I-TGSSDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTVHLPPGFHTVSFYVLDEDTLS--- 74 (121)
T ss_pred EEEEEEEeeCCcCCC---C-CCCCCceEEEEECCEeeeeeeeEcCCCCCcccceEEEeeCCCCCEEEEEEEECCCCC---
Confidence 789999999998865 4 7899999999998764 6999999999999999999999877789999999999887
Q ss_pred CCCCCCceeEEEEEEcccccCC-ceEeeEEEeeeeccCCcccccEEEEEEE
Q 042999 700 SEERPDYRIGKIRIRVSTLENN-KVYTTSYPLLVLLRTGLKKMGEIELAVR 749 (1006)
Q Consensus 700 ~~~~~d~~lG~~~i~l~~l~~~-~~~~~~~~L~~~~~~g~~~~G~l~l~~~ 749 (1006)
+|++||++.+++..+..+ ...+.|++|......+. ..|+|++.++
T Consensus 75 ----~d~~iG~~~~~~~~~~~~~~~~~~W~~L~~~~~~~~-~~G~i~l~~~ 120 (121)
T cd04054 75 ----RDDVIGKVSLTREVISAHPRGIDGWMNLTEVDPDEE-VQGEIHLELS 120 (121)
T ss_pred ----CCCEEEEEEEcHHHhccCCCCCCcEEECeeeCCCCc-cccEEEEEEE
Confidence 899999999999888754 33579999987544332 3599998764
No 36
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=99.74 E-value=4.7e-17 Score=154.42 Aligned_cols=120 Identities=18% Similarity=0.273 Sum_probs=101.9
Q ss_pred cEEEEEEEeeccCCccCccCCCCCCCCCeEEEEEECCEEEEeecccCCCCCeeccEEEEEEeCCCcEEEEEEEECCCCCc
Q 042999 618 VGILELGILGARGLLPMKTKNGGKGSTDAYCVAKYGKKWVRTRTITDCFDPRWNEQYTWQVYDPCTVLTVGVFDNWRMFA 697 (1006)
Q Consensus 618 ~g~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~~~~~rT~~~~~~~nP~wne~~~~~v~~~~~~l~i~v~d~~~~~~ 697 (1006)
.+.|+|+|++|++|++.+ . .|.+||||++.++++.+||++++++.||+|||.|.|.+.+....|.|+|||++..
T Consensus 2 ~~~~~V~v~~A~~L~~~d---~-~g~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~i~V~d~~~~-- 75 (126)
T cd04046 2 QVVTQVHVHSAEGLSKQD---S-GGGADPYVIIKCEGESVRSPVQKDTLSPEFDTQAIFYRKKPRSPIKIQVWNSNLL-- 75 (126)
T ss_pred cEEEEEEEEeCcCCCCCC---C-CCCcCccEEEEECCEEEEeCccCCCCCCcccceEEEEecCCCCEEEEEEEECCCC--
Confidence 478999999999998754 4 7899999999999999999999999999999999999988888999999999875
Q ss_pred CCCCCCCCceeEEEEEEcccccCCceEeeEEEeeeec--cCCcccccEEEEEEEEec
Q 042999 698 DASEERPDYRIGKIRIRVSTLENNKVYTTSYPLLVLL--RTGLKKMGEIELAVRFVC 752 (1006)
Q Consensus 698 ~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~--~~g~~~~G~l~l~~~~~~ 752 (1006)
+|++||.+.+++..+..+. ..+|+|.... .++ +..|+|.+++.+.+
T Consensus 76 ------~d~~lG~~~~~l~~~~~~~--~~~~~l~~~~~~~~~-~~~G~i~~~~~~~~ 123 (126)
T cd04046 76 ------CDEFLGQATLSADPNDSQT--LRTLPLRKRGRDAAG-EVPGTISVKVTSSD 123 (126)
T ss_pred ------CCCceEEEEEecccCCCcC--ceEEEcccCCCCCCC-CCCCEEEEEEEEcc
Confidence 4889999999998865444 5888996432 223 34599999998764
No 37
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=99.74 E-value=1.6e-17 Score=156.19 Aligned_cols=117 Identities=27% Similarity=0.455 Sum_probs=101.3
Q ss_pred cEEEEEEEEecCCCCCCCCCCCCcEEEEEECCeEEEeeCcC-CCCCCeeeeEEEEEeeCCCCCCCceEEEEEEeCCCCCC
Q 042999 16 RKLVVEVVDARDLLPKDGQGSSSPYVIADFDGQRKRTSTKF-RDLNPVWNEPLEFIVSDPKNMDCEELEIEVYNDKRYCN 94 (1006)
Q Consensus 16 ~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~~~~kT~~~~-~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~d~~~~ 94 (1006)
|.|.|+|++|++|+.++..+.+||||++.+++++++|+++. +++||+|||.|.|.+.... ...|.|+|||++..
T Consensus 1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~~---~~~l~i~v~d~~~~-- 75 (118)
T cd08681 1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGGVTKKTKTDFRGGQHPEWDEELRFEITEDK---KPILKVAVFDDDKR-- 75 (118)
T ss_pred CEEEEEEEEccCCCCCCcCCCCCceEEEEECCCccccccccCCCCCCccCceEEEEecCCC---CCEEEEEEEeCCCC--
Confidence 57999999999999999889999999999999899999875 5799999999999998743 56899999999887
Q ss_pred CCCCCCceeEEEEEeCeeeeeeCCceeEEEEceecCCceeeeEEEEEEEEE
Q 042999 95 GSGRKNHFLGRVKLCGSQFARRGDEGLVYFPLEKKSVFSWIRGEIGLRIYY 145 (1006)
Q Consensus 95 ~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~ 145 (1006)
+ +++||++.++++++.. +....+|++|...+ +..|+|+++++|
T Consensus 76 ---~-~~~iG~~~~~l~~~~~-~~~~~~w~~L~~~~---~~~G~i~l~l~f 118 (118)
T cd08681 76 ---K-PDLIGDTEVDLSPALK-EGEFDDWYELTLKG---RYAGEVYLELTF 118 (118)
T ss_pred ---C-CcceEEEEEecHHHhh-cCCCCCcEEeccCC---cEeeEEEEEEEC
Confidence 4 8999999999999644 34456899998654 458999999986
No 38
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.73 E-value=1.9e-17 Score=153.50 Aligned_cols=107 Identities=25% Similarity=0.383 Sum_probs=90.3
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEECC-------eEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEeC
Q 042999 17 KLVVEVVDARDLLPKDGQGSSSPYVIADFDG-------QRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYND 89 (1006)
Q Consensus 17 ~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~-------~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~ 89 (1006)
.|+|+|++|++|+.++ .|.+||||+|++.+ ++++|+++.+|+||+|||+|.|.+..........|.|.|||+
T Consensus 1 kL~V~Vi~A~~L~~~d-~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~ 79 (120)
T cd08395 1 KVTVKVVAANDLKWQT-TGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDY 79 (120)
T ss_pred CEEEEEEECcCCCccc-CCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEe
Confidence 4899999999999888 48999999999831 357899999999999999999999864333356799999999
Q ss_pred CCCCCCCCCCCceeEEEEEeCeeeeeeCCceeEEEEceecC
Q 042999 90 KRYCNGSGRKNHFLGRVKLCGSQFARRGDEGLVYFPLEKKS 130 (1006)
Q Consensus 90 d~~~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~ 130 (1006)
+.. +++++||++.+++.++ ..+.....|++|.+..
T Consensus 80 d~~-----~~dd~IG~~~l~l~~~-~~~~~~~~w~~L~~~~ 114 (120)
T cd08395 80 CFA-----RDDRLVGVTVLQLRDI-AQAGSCACWLPLGRRI 114 (120)
T ss_pred ccc-----CCCCEEEEEEEEHHHC-cCCCcEEEEEECcCcc
Confidence 977 6899999999999996 4555677899997643
No 39
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=99.73 E-value=2.8e-17 Score=155.49 Aligned_cols=117 Identities=25% Similarity=0.494 Sum_probs=100.8
Q ss_pred EEEEEEEeeccCCccCccCC---CCCCCCCeEEEEEECCEEEEeecccCCCCCeeccEEEEEEeC-CCcEEEEEEEECCC
Q 042999 619 GILELGILGARGLLPMKTKN---GGKGSTDAYCVAKYGKKWVRTRTITDCFDPRWNEQYTWQVYD-PCTVLTVGVFDNWR 694 (1006)
Q Consensus 619 g~L~v~v~~a~~L~~~~~~d---~~~g~sdpyv~v~~~~~~~rT~~~~~~~nP~wne~~~~~v~~-~~~~l~i~v~d~~~ 694 (1006)
|.|+|+|++|+||++++... . .|.+||||+++++++..+|++++++.||.|||.|.|.+.+ ....|.|+|||++.
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~~~-~g~~dPyv~v~~~~~~~kT~~~~~t~~P~W~e~f~~~v~~~~~~~l~i~v~d~~~ 79 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGGLV-KGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEVYEAVVDEVPGQELEIELFDEDP 79 (121)
T ss_pred CeEEEEEEEccCCcccccccccCC-CCCcCCEEEEEECCEeEEccccCCCCCCcccceEEEEeCCCCCCEEEEEEEecCC
Confidence 78999999999999865311 1 3689999999999999999999999999999999999976 56799999999986
Q ss_pred CCcCCCCCCCCceeEEEEEEcccccCCceEeeEEEeeeeccCCcccccEEEEEEEE
Q 042999 695 MFADASEERPDYRIGKIRIRVSTLENNKVYTTSYPLLVLLRTGLKKMGEIELAVRF 750 (1006)
Q Consensus 695 ~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~l~l~~~~ 750 (1006)
. +|++||.+.+++.++..+...+.||+|.+. ..|+|+++++|
T Consensus 80 ~--------~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~------~~G~~~~~~~~ 121 (121)
T cd08391 80 D--------KDDFLGRLSIDLGSVEKKGFIDEWLPLEDV------KSGRLHLKLEW 121 (121)
T ss_pred C--------CCCcEEEEEEEHHHhcccCccceEEECcCC------CCceEEEEEeC
Confidence 4 488999999999999887777899999642 34999998875
No 40
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=99.73 E-value=2.6e-17 Score=155.97 Aligned_cols=119 Identities=26% Similarity=0.398 Sum_probs=101.1
Q ss_pred EEEEEEeeccCCccCccCCCCCCCCCeEEEEEECCEEEEeecccCCCCCeeccEEEEEEeCC-CcEEEEEEEECCCCCcC
Q 042999 620 ILELGILGARGLLPMKTKNGGKGSTDAYCVAKYGKKWVRTRTITDCFDPRWNEQYTWQVYDP-CTVLTVGVFDNWRMFAD 698 (1006)
Q Consensus 620 ~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~~~~~rT~~~~~~~nP~wne~~~~~v~~~-~~~l~i~v~d~~~~~~~ 698 (1006)
.|+|+|++|++|++++ . .|.+||||++.+++...+|+++++++||.|||+|.|.+... ...|.|+|||++..+
T Consensus 1 ~L~v~vi~a~~L~~~d---~-~~~~DPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~~~v~d~~~~~-- 74 (123)
T cd04025 1 RLRCHVLEARDLAPKD---R-NGTSDPFVRVFYNGQTLETSVVKKSCYPRWNEVFEFELMEGADSPLSVEVWDWDLVS-- 74 (123)
T ss_pred CEEEEEEEeeCCCCCC---C-CCCcCceEEEEECCEEEeceeecCCCCCccCcEEEEEcCCCCCCEEEEEEEECCCCC--
Confidence 3899999999998864 4 67899999999999999999999999999999999999875 468999999999877
Q ss_pred CCCCCCCceeEEEEEEcccccCCceEeeEEEeeeeccC---CcccccEEEEEEE
Q 042999 699 ASEERPDYRIGKIRIRVSTLENNKVYTTSYPLLVLLRT---GLKKMGEIELAVR 749 (1006)
Q Consensus 699 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~---g~~~~G~l~l~~~ 749 (1006)
++++||.+.++|.++..+.....||.|...... ..+..|.|++.++
T Consensus 75 -----~~~~iG~~~~~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~~G~l~~~~~ 123 (123)
T cd04025 75 -----KNDFLGKVVFSIQTLQQAKQEEGWFRLLPDPRAEEESGGNLGSLRLKVR 123 (123)
T ss_pred -----CCcEeEEEEEEHHHcccCCCCCCEEECCCCCCCCccccCceEEEEEEeC
Confidence 789999999999999876666899999864322 1223499998764
No 41
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=99.73 E-value=5.3e-17 Score=155.45 Aligned_cols=121 Identities=26% Similarity=0.456 Sum_probs=102.2
Q ss_pred CCcccEEEEEEEEecCCCCCCCCCCCCcEEEEEECCeEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEeCCC
Q 042999 12 QFTVRKLVVEVVDARDLLPKDGQGSSSPYVIADFDGQRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYNDKR 91 (1006)
Q Consensus 12 ~~~~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~d~ 91 (1006)
....|.|+|+|++|++|+..+..|.+||||++.++++.++|+++++++||.|||+|.|.+.... ...|.|+|||++.
T Consensus 11 ~~~~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~~~~~kT~vi~~t~nP~Wne~f~f~v~~~~---~~~l~i~V~D~d~ 87 (136)
T cd08375 11 ASGIGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQEHKTKVVSDTLNPKWNSSMQFFVKDLE---QDVLCITVFDRDF 87 (136)
T ss_pred CCCcEEEEEEEEEeeCCCCCCCCCCcCcEEEEEECCEeeeccccCCCCCCccCceEEEEecCcc---CCEEEEEEEECCC
Confidence 3456899999999999999998899999999999999999999999999999999999997643 4689999999999
Q ss_pred CCCCCCCCCceeEEEEEeCeeeeeeC----CceeEEEEceecCCceeeeEEEEEEEEE
Q 042999 92 YCNGSGRKNHFLGRVKLCGSQFARRG----DEGLVYFPLEKKSVFSWIRGEIGLRIYY 145 (1006)
Q Consensus 92 ~~~~~~~~d~~lG~~~v~l~~l~~~~----~~~~~w~~L~~~~~~~~~~G~i~l~~~~ 145 (1006)
+ ++|++||++.+++.++.... .....|..|.. ..+|+|++++.+
T Consensus 88 ~-----~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~-----~~~g~i~l~~~~ 135 (136)
T cd08375 88 F-----SPDDFLGRTEIRVADILKETKESKGPITKRLLLHE-----VPTGEVVVKLDL 135 (136)
T ss_pred C-----CCCCeeEEEEEEHHHhccccccCCCcEEEEecccc-----ccceeEEEEEEe
Confidence 8 78999999999999976521 22234566532 348999999876
No 42
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=99.73 E-value=5.5e-17 Score=152.07 Aligned_cols=115 Identities=26% Similarity=0.459 Sum_probs=102.0
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEECCeEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEeCCCCCCCC
Q 042999 17 KLVVEVVDARDLLPKDGQGSSSPYVIADFDGQRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYNDKRYCNGS 96 (1006)
Q Consensus 17 ~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~d~~~~~~ 96 (1006)
+|+|+|++|++|+.++..|.+||||++++++++++|+++++++||.|||+|.|.+.... ...|.|+|||++..
T Consensus 1 ~~~V~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~---~~~l~v~v~d~~~~---- 73 (116)
T cd08376 1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRLGNEKYKSKVCSKTLNPQWLEQFDLHLFDDQ---SQILEIEVWDKDTG---- 73 (116)
T ss_pred CEEEEEEEEECCCCCCCCCCCCcEEEEEECCEeEecccccCCCCCceeEEEEEEecCCC---CCEEEEEEEECCCC----
Confidence 47899999999999998899999999999999999999999999999999999987653 56899999999998
Q ss_pred CCCCceeEEEEEeCeeeeeeCCceeEEEEceecCCceeeeEEEEEEEEEE
Q 042999 97 GRKNHFLGRVKLCGSQFARRGDEGLVYFPLEKKSVFSWIRGEIGLRIYYY 146 (1006)
Q Consensus 97 ~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~ 146 (1006)
+++++||++.++++++ ..+.....|++|.+. .|+|++.+.|.
T Consensus 74 -~~~~~iG~~~~~l~~l-~~~~~~~~w~~L~~~------~G~~~~~~~~~ 115 (116)
T cd08376 74 -KKDEFIGRCEIDLSAL-PREQTHSLELELEDG------EGSLLLLLTLT 115 (116)
T ss_pred -CCCCeEEEEEEeHHHC-CCCCceEEEEEccCC------CcEEEEEEEec
Confidence 7899999999999996 455566789999853 59999988774
No 43
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=99.73 E-value=3.9e-17 Score=153.61 Aligned_cols=100 Identities=20% Similarity=0.296 Sum_probs=88.5
Q ss_pred EEEEEEEeeccCCccCccCCCCCCCCCeEEEEEEC-----CEEEEeecccCCCCCeeccEEEEEEeC----CCcEEEEEE
Q 042999 619 GILELGILGARGLLPMKTKNGGKGSTDAYCVAKYG-----KKWVRTRTITDCFDPRWNEQYTWQVYD----PCTVLTVGV 689 (1006)
Q Consensus 619 g~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~-----~~~~rT~~~~~~~nP~wne~~~~~v~~----~~~~l~i~v 689 (1006)
|.|.|.|++|+||++++ .|.+||||++.+. ....||+++++++||.|||+|.|++.. ....|.|+|
T Consensus 13 ~~L~V~Vi~A~~L~~~~-----~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V 87 (122)
T cd08381 13 GTLFVMVMHAKNLPLLD-----GSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSV 87 (122)
T ss_pred CEEEEEEEEeeCCCCCC-----CCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChHHhCCCEEEEEE
Confidence 68999999999999865 4679999999996 347899999999999999999999732 456899999
Q ss_pred EECCCCCcCCCCCCCCceeEEEEEEcccccCCceEeeEEEe
Q 042999 690 FDNWRMFADASEERPDYRIGKIRIRVSTLENNKVYTTSYPL 730 (1006)
Q Consensus 690 ~d~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L 730 (1006)
||+|.++ ++++||.+.|+|+++..+.....||+|
T Consensus 88 ~d~d~~~-------~~~~lG~~~i~l~~l~~~~~~~~W~~L 121 (122)
T cd08381 88 WSHDSLV-------ENEFLGGVCIPLKKLDLSQETEKWYPL 121 (122)
T ss_pred EeCCCCc-------CCcEEEEEEEeccccccCCCccceEEC
Confidence 9999887 799999999999999988777899998
No 44
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.72 E-value=3.7e-17 Score=153.45 Aligned_cols=114 Identities=29% Similarity=0.435 Sum_probs=98.3
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEECCeEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEeCCCCCCCCC
Q 042999 18 LVVEVVDARDLLPKDGQGSSSPYVIADFDGQRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYNDKRYCNGSG 97 (1006)
Q Consensus 18 L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~d~~~~~~~ 97 (1006)
|.|+|++|++|+.+ .+||||++.+++++.+|+++++++||+|||+|.|.+.... ...|.|+|||++..
T Consensus 2 L~V~Vi~a~~L~~~----~~Dpyv~v~l~~~~~kT~v~~~t~nP~Wne~F~f~~~~~~---~~~L~~~v~d~d~~----- 69 (121)
T cd08378 2 LYVRVVKARGLPAN----SNDPVVEVKLGNYKGSTKAIERTSNPEWNQVFAFSKDRLQ---GSTLEVSVWDKDKA----- 69 (121)
T ss_pred EEEEEEEecCCCcc----cCCCEEEEEECCccccccccCCCCCCccceEEEEEcCCCc---CCEEEEEEEeCCCC-----
Confidence 78999999999877 7999999999999999999999999999999999976532 56899999999987
Q ss_pred CCCceeEEEEEeCeeeeeeC----CceeEEEEceecCCceeeeEEEEEEEEE
Q 042999 98 RKNHFLGRVKLCGSQFARRG----DEGLVYFPLEKKSVFSWIRGEIGLRIYY 145 (1006)
Q Consensus 98 ~~d~~lG~~~v~l~~l~~~~----~~~~~w~~L~~~~~~~~~~G~i~l~~~~ 145 (1006)
++++||++.++++++.... ....+||+|..... ++.+|+|+|.+.|
T Consensus 70 -~~~~lG~~~i~l~~l~~~~~~~~~~~~~W~~L~~~~~-~~~~G~i~l~~~~ 119 (121)
T cd08378 70 -KDDFLGGVCFDLSEVPTRVPPDSPLAPQWYRLEDKKG-GRVGGELMLAVWF 119 (121)
T ss_pred -cCceeeeEEEEhHhCcCCCCCCCCCCcceEEccCCCC-CccceEEEEEEEe
Confidence 7899999999999974322 12358999987654 5779999999987
No 45
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.72 E-value=4e-17 Score=157.09 Aligned_cols=121 Identities=30% Similarity=0.435 Sum_probs=103.7
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEECCe-------EEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEeC
Q 042999 17 KLVVEVVDARDLLPKDGQGSSSPYVIADFDGQ-------RKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYND 89 (1006)
Q Consensus 17 ~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~~-------~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~ 89 (1006)
.|+|+|++|++|+.++..|.+||||++.+++. .++|++++++.||.|||+|.|.+... ...|.|+|||+
T Consensus 1 ~L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~----~~~l~~~v~d~ 76 (133)
T cd04033 1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNPR----EHRLLFEVFDE 76 (133)
T ss_pred CEEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcCC----CCEEEEEEEEC
Confidence 38899999999999998899999999999754 47999999999999999999998764 45799999999
Q ss_pred CCCCCCCCCCCceeEEEEEeCeeeeeeCC-----ceeEEEEceecCCceeeeEEEEEEEEEE
Q 042999 90 KRYCNGSGRKNHFLGRVKLCGSQFARRGD-----EGLVYFPLEKKSVFSWIRGEIGLRIYYY 146 (1006)
Q Consensus 90 d~~~~~~~~~d~~lG~~~v~l~~l~~~~~-----~~~~w~~L~~~~~~~~~~G~i~l~~~~~ 146 (1006)
+.+ +++++||++.++++++..... ....||+|++....++.+|+|++++.|.
T Consensus 77 ~~~-----~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~G~l~~~~~~~ 133 (133)
T cd04033 77 NRL-----TRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRSSKSRVKGHLRLYMAYL 133 (133)
T ss_pred CCC-----CCCCeeEEEEEEHHHCCCcCccccccccchheeeeecCCCCcceeEEEEEEeeC
Confidence 998 789999999999999754322 2348999997665667799999999874
No 46
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=99.72 E-value=5.6e-17 Score=152.71 Aligned_cols=118 Identities=25% Similarity=0.414 Sum_probs=101.5
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEECCeE-EEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEeCCCCCCCC
Q 042999 18 LVVEVVDARDLLPKDGQGSSSPYVIADFDGQR-KRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYNDKRYCNGS 96 (1006)
Q Consensus 18 L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~~~-~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~d~~~~~~ 96 (1006)
|.|+|++|++|.+++..|.+||||++.+++.. .+|+++.+++||+|||.|.|.+... ...|.|+|||++..
T Consensus 2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~~----~~~l~v~v~d~~~~---- 73 (121)
T cd04054 2 LYIRIVEGKNLPAKDITGSSDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTVHLPPG----FHTVSFYVLDEDTL---- 73 (121)
T ss_pred EEEEEEEeeCCcCCCCCCCCCceEEEEECCEeeeeeeeEcCCCCCcccceEEEeeCCC----CCEEEEEEEECCCC----
Confidence 78999999999999999999999999998754 7999999999999999999998653 46899999999998
Q ss_pred CCCCceeEEEEEeCeeeeeeCCceeEEEEceecCCceeeeEEEEEEEE
Q 042999 97 GRKNHFLGRVKLCGSQFARRGDEGLVYFPLEKKSVFSWIRGEIGLRIY 144 (1006)
Q Consensus 97 ~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~ 144 (1006)
++|++||++.++++.+...+.....|++|.+........|+|++.++
T Consensus 74 -~~d~~iG~~~~~~~~~~~~~~~~~~W~~L~~~~~~~~~~G~i~l~~~ 120 (121)
T cd04054 74 -SRDDVIGKVSLTREVISAHPRGIDGWMNLTEVDPDEEVQGEIHLELS 120 (121)
T ss_pred -CCCCEEEEEEEcHHHhccCCCCCCcEEECeeeCCCCccccEEEEEEE
Confidence 78999999999998875433445689999875544557899998875
No 47
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=99.72 E-value=4.9e-17 Score=155.48 Aligned_cols=122 Identities=29% Similarity=0.447 Sum_probs=104.8
Q ss_pred cEEEEEEEEecCCCCCCC--CCCCCcEEEEEECCeEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEeCCCCC
Q 042999 16 RKLVVEVVDARDLLPKDG--QGSSSPYVIADFDGQRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYNDKRYC 93 (1006)
Q Consensus 16 ~~L~V~v~~a~~L~~~~~--~g~~dPyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~d~~~ 93 (1006)
|.|+|+|++|++|+.++. .+.+||||++.+++++++|+++++++||.|||+|.|.+.... ...|.|+|||++..
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~~~~~kT~~~~~t~~P~Wne~f~~~~~~~~---~~~l~i~v~d~~~~- 76 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPIFSAQ---NQLLKLILWDKDRF- 76 (128)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEECCEEEecceecCCcCCccCCcEEEEecCCC---CCEEEEEEEECCCC-
Confidence 579999999999999887 789999999999999999999999999999999999998632 56899999999988
Q ss_pred CCCCCCCceeEEEEEeCeeeeee--CCceeEEEEceecC--CceeeeEEEEEEEEE
Q 042999 94 NGSGRKNHFLGRVKLCGSQFARR--GDEGLVYFPLEKKS--VFSWIRGEIGLRIYY 145 (1006)
Q Consensus 94 ~~~~~~d~~lG~~~v~l~~l~~~--~~~~~~w~~L~~~~--~~~~~~G~i~l~~~~ 145 (1006)
+++++||++.+++.++... ......|++|.+.. ......|+|+|++.|
T Consensus 77 ----~~~~~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~~~G~i~l~~~~ 128 (128)
T cd04024 77 ----AGKDYLGEFDIALEEVFADGKTGQSDKWITLKSTRPGKTSVVSGEIHLQFSW 128 (128)
T ss_pred ----CCCCcceEEEEEHHHhhcccccCccceeEEccCcccCccccccceEEEEEEC
Confidence 7899999999999997532 23346899998653 234578999999876
No 48
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.72 E-value=5.3e-17 Score=149.18 Aligned_cols=99 Identities=23% Similarity=0.386 Sum_probs=87.8
Q ss_pred cceEEEEEEEeeCCCCCC--CcEEEEEECCeeeeeeEeeccCCCCCCCCeeceEEEEeccCCCCCCCEEEEEEEcCC--C
Q 042999 295 MMYLFVKIRKARGLVPNE--APYVKIRTSSHYKKSKLASYRACDPHDSPEWNQVFALFHNKNDSVSATLEITVWDSP--T 370 (1006)
Q Consensus 295 ~~~l~V~v~~a~~l~~~~--dpyv~v~~~~~~~~T~~~~~~~~~~~~nP~wne~f~f~~~~~~~~~~~l~i~V~D~~--~ 370 (1006)
|++|+|+|++|++|+++. ||||.|++|+++.+|+++ ++ .||+|||.|.|.+.+.+ ..|.|+|||++ .
T Consensus 1 m~~L~V~Vv~Ar~L~~~~~~dPYV~Ik~g~~k~kT~v~-----~~-~nP~WnE~F~F~~~~~~---~~L~v~V~dkd~~~ 71 (127)
T cd08394 1 MSLLCVLVKKAKLDGAPDKFNTYVTLKVQNVKSTTIAV-----RG-SQPCWEQDFMFEINRLD---LGLVIELWNKGLIW 71 (127)
T ss_pred CceEEEEEEEeeCCCCCCCCCCeEEEEECCEEeEeeEC-----CC-CCCceeeEEEEEEcCCC---CEEEEEEEeCCCcC
Confidence 568999999999998744 999999999999999999 66 59999999999998875 55999999988 6
Q ss_pred CCccEEEEEeCCcCCCCCCCCCCCcceeEEcccCC
Q 042999 371 ENFLGGVCFDLSDVPVRDPPDSPLAPQWYRLEGEA 405 (1006)
Q Consensus 371 d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~ 405 (1006)
|++||++.|+|.++..+ +..+.++||+|+...
T Consensus 72 DD~lG~v~i~L~~v~~~---~~~~~~~Wy~L~~~~ 103 (127)
T cd08394 72 DTLVGTVWIPLSTIRQS---NEEGPGEWLTLDSEV 103 (127)
T ss_pred CCceEEEEEEhHHcccC---CCCCCCccEecChHH
Confidence 99999999999999985 557778999999654
No 49
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=99.72 E-value=7.5e-17 Score=153.22 Aligned_cols=120 Identities=28% Similarity=0.485 Sum_probs=102.1
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEEC--CeEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEeCCCCCCC
Q 042999 18 LVVEVVDARDLLPKDGQGSSSPYVIADFD--GQRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYNDKRYCNG 95 (1006)
Q Consensus 18 L~V~v~~a~~L~~~~~~g~~dPyv~v~~~--~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~d~~~~~ 95 (1006)
|.|+|++|++|+. ..|.+||||++.++ .++++|+++++++||+|||.|.|.+... ...|.|+|||++..
T Consensus 1 l~v~v~~A~~L~~--~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~----~~~l~~~v~d~~~~--- 71 (126)
T cd08678 1 LLVKNIKANGLSE--AAGSSNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFELSPN----SKELLFEVYDNGKK--- 71 (126)
T ss_pred CEEEEEEecCCCC--CCCCcCCEEEEEECCCCcEEEeEEEecCCCCccCceEEEEeCCC----CCEEEEEEEECCCC---
Confidence 6799999999987 67899999999997 4678999999999999999999998653 56899999999998
Q ss_pred CCCCCceeEEEEEeCeeeeeeCCceeEEEEceecCC-ceeeeEEEEEEEEEEecC
Q 042999 96 SGRKNHFLGRVKLCGSQFARRGDEGLVYFPLEKKSV-FSWIRGEIGLRIYYYDEL 149 (1006)
Q Consensus 96 ~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~~-~~~~~G~i~l~~~~~~~~ 149 (1006)
+++++||++.++++++. .+.....|++|.+... .....|+|.+++.|.+..
T Consensus 72 --~~~~~lG~~~i~l~~l~-~~~~~~~~~~L~~~~~~~~~~~G~l~l~~~~~~~~ 123 (126)
T cd08678 72 --SDSKFLGLAIVPFDELR-KNPSGRQIFPLQGRPYEGDSVSGSITVEFLFMEPA 123 (126)
T ss_pred --CCCceEEEEEEeHHHhc-cCCceeEEEEecCCCCCCCCcceEEEEEEEEeccc
Confidence 78999999999999964 4444568999986532 245689999999998765
No 50
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=99.71 E-value=8.8e-17 Score=151.89 Aligned_cols=105 Identities=15% Similarity=0.203 Sum_probs=91.0
Q ss_pred CcEEEEEEEeeccCCccCccCCCCCCCCCeEEEEEEC-----CEEEEeecccCCCCCeeccEEEEEEeC---CCcEEEEE
Q 042999 617 PVGILELGILGARGLLPMKTKNGGKGSTDAYCVAKYG-----KKWVRTRTITDCFDPRWNEQYTWQVYD---PCTVLTVG 688 (1006)
Q Consensus 617 ~~g~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~-----~~~~rT~~~~~~~nP~wne~~~~~v~~---~~~~l~i~ 688 (1006)
..|.|.|+|++|+||++.+. . .|.+||||++.+. ....||+++++++||+|||+|.|.+.. ....|.|+
T Consensus 13 ~~~~L~V~Vi~a~~L~~~~~--~-~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~l~~~~L~~~ 89 (125)
T cd04029 13 KTQSLNVHVKECRNLAYGDE--A-KKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHSQLETRTLQLS 89 (125)
T ss_pred CCCeEEEEEEEecCCCccCC--C-CCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCHHHhCCCEEEEE
Confidence 45789999999999988642 2 5789999999984 235799999999999999999999865 35689999
Q ss_pred EEECCCCCcCCCCCCCCceeEEEEEEcccccCCceEeeEEEee
Q 042999 689 VFDNWRMFADASEERPDYRIGKIRIRVSTLENNKVYTTSYPLL 731 (1006)
Q Consensus 689 v~d~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 731 (1006)
|||+|.++ ++++||.+.|+|.++...+..+.||||.
T Consensus 90 V~d~~~~~-------~~~~lG~~~i~l~~~~~~~~~~~w~~l~ 125 (125)
T cd04029 90 VWHYDRFG-------RNTFLGEVEIPLDSWNFDSQHEECLPLH 125 (125)
T ss_pred EEECCCCC-------CCcEEEEEEEeCCcccccCCcccEEECc
Confidence 99999887 8999999999999998888889999983
No 51
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=99.71 E-value=1.4e-16 Score=151.98 Aligned_cols=126 Identities=21% Similarity=0.336 Sum_probs=104.6
Q ss_pred CcEEEEEEEeeccCCccCccCCCCCCCCCeEEEEEECCEEE-EeecccCCCCCeeccEEEEEEeCCCcEEEEEEEECCCC
Q 042999 617 PVGILELGILGARGLLPMKTKNGGKGSTDAYCVAKYGKKWV-RTRTITDCFDPRWNEQYTWQVYDPCTVLTVGVFDNWRM 695 (1006)
Q Consensus 617 ~~g~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~~~~~-rT~~~~~~~nP~wne~~~~~v~~~~~~l~i~v~d~~~~ 695 (1006)
....|.|.|++|+|||++ -||||.|.++++.+ ||+++.++.||.|+|.|.|+...+...|+|.||+.+..
T Consensus 9 ~~~sL~v~V~EAk~Lp~~---------~~~Y~~i~Ld~~~vaRT~v~~~~~nP~W~E~F~f~~~~~~~~l~v~v~k~~~~ 79 (146)
T cd04013 9 TENSLKLWIIEAKGLPPK---------KRYYCELCLDKTLYARTTSKLKTDTLFWGEHFEFSNLPPVSVITVNLYRESDK 79 (146)
T ss_pred EEEEEEEEEEEccCCCCc---------CCceEEEEECCEEEEEEEEEcCCCCCcceeeEEecCCCcccEEEEEEEEccCc
Confidence 346799999999999874 37999999998875 99999999999999999999877778899999876543
Q ss_pred CcCCCCCCCCceeEEEEEEcccccCCceEeeEEEeeeeccCC-------cccccEEEEEEEEecCC
Q 042999 696 FADASEERPDYRIGKIRIRVSTLENNKVYTTSYPLLVLLRTG-------LKKMGEIELAVRFVCPS 754 (1006)
Q Consensus 696 ~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g-------~~~~G~l~l~~~~~~~~ 754 (1006)
.+.+ .++++||++.||+.++..+...+.||||.+..... ....+.|+++++|.+-.
T Consensus 80 ~~~~---~~~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~~~~ 142 (146)
T cd04013 80 KKKK---DKSQLIGTVNIPVTDVSSRQFVEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQSTR 142 (146)
T ss_pred cccc---cCCcEEEEEEEEHHHhcCCCcccEEEEeecCCCCCccccccccCCCCEEEEEEEEEEee
Confidence 2111 15789999999999999998889999999866543 33458999999998643
No 52
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.71 E-value=5.7e-17 Score=148.96 Aligned_cols=99 Identities=14% Similarity=0.156 Sum_probs=87.1
Q ss_pred EEEEEEEeeccCCccCccCCCCCCCCCeEEEEEECCEEEEeecccCCCCCeeccEEEEEEeCCCcEEEEEEEECCCCCcC
Q 042999 619 GILELGILGARGLLPMKTKNGGKGSTDAYCVAKYGKKWVRTRTITDCFDPRWNEQYTWQVYDPCTVLTVGVFDNWRMFAD 698 (1006)
Q Consensus 619 g~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~~~~~rT~~~~~~~nP~wne~~~~~v~~~~~~l~i~v~d~~~~~~~ 698 (1006)
|.|.|.|++|++|+. .+..||||+|++|+++.+|++++++ ||.|||+|.|.+.+....|.|+|||+|.+
T Consensus 2 ~~L~V~Vv~Ar~L~~-------~~~~dPYV~Ik~g~~k~kT~v~~~~-nP~WnE~F~F~~~~~~~~L~v~V~dkd~~--- 70 (127)
T cd08394 2 SLLCVLVKKAKLDGA-------PDKFNTYVTLKVQNVKSTTIAVRGS-QPCWEQDFMFEINRLDLGLVIELWNKGLI--- 70 (127)
T ss_pred ceEEEEEEEeeCCCC-------CCCCCCeEEEEECCEEeEeeECCCC-CCceeeEEEEEEcCCCCEEEEEEEeCCCc---
Confidence 689999999999965 3346999999999999999999885 99999999999988888899999999864
Q ss_pred CCCCCCCceeEEEEEEcccccCCceE--eeEEEeeee
Q 042999 699 ASEERPDYRIGKIRIRVSTLENNKVY--TTSYPLLVL 733 (1006)
Q Consensus 699 ~~~~~~d~~lG~~~i~l~~l~~~~~~--~~~~~L~~~ 733 (1006)
.||+||++.|+|.++..+... ..||+|..+
T Consensus 71 -----~DD~lG~v~i~L~~v~~~~~~~~~~Wy~L~~~ 102 (127)
T cd08394 71 -----WDTLVGTVWIPLSTIRQSNEEGPGEWLTLDSE 102 (127)
T ss_pred -----CCCceEEEEEEhHHcccCCCCCCCccEecChH
Confidence 599999999999998866544 789999754
No 53
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=99.71 E-value=1.5e-16 Score=150.83 Aligned_cols=121 Identities=26% Similarity=0.428 Sum_probs=100.2
Q ss_pred ccEEEEEEEEecCCCCCCCCCCCCcEEEEEECCeE-EEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEeCCCCC
Q 042999 15 VRKLVVEVVDARDLLPKDGQGSSSPYVIADFDGQR-KRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYNDKRYC 93 (1006)
Q Consensus 15 ~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~~~-~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~d~~~ 93 (1006)
...|+|+|++|+||+.+ +.+||||++.+++.+ .+|++. ++.||.|||+|.|.+.... ...+.|.|||++..
T Consensus 3 ~~~L~V~Vi~A~~L~~~---~~~DPYv~v~l~~~~~~kT~v~-~~~nP~WnE~f~f~~~~~~---~~~l~v~v~d~~~~- 74 (126)
T cd08400 3 VRSLQLNVLEAHKLPVK---HVPHPYCVISLNEVKVARTKVR-EGPNPVWSEEFVFDDLPPD---VNSFTISLSNKAKR- 74 (126)
T ss_pred eeEEEEEEEEeeCCCCC---CCCCeeEEEEECCEeEEEeecC-CCCCCccCCEEEEecCCCC---cCEEEEEEEECCCC-
Confidence 45799999999999874 478999999998744 788875 6899999999999865532 24789999999998
Q ss_pred CCCCCCCceeEEEEEeCeeeeeeCCceeEEEEceecCC-ceeeeEEEEEEEEEEec
Q 042999 94 NGSGRKNHFLGRVKLCGSQFARRGDEGLVYFPLEKKSV-FSWIRGEIGLRIYYYDE 148 (1006)
Q Consensus 94 ~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~~-~~~~~G~i~l~~~~~~~ 148 (1006)
++|++||.+.++++++ ..+.....|++|.+... ..+..|+|+|+++|.++
T Consensus 75 ----~~d~~iG~v~i~l~~l-~~~~~~~~W~~L~~~~~~~~~~~G~i~l~l~~~~~ 125 (126)
T cd08400 75 ----SKDSEIAEVTVQLSKL-QNGQETDEWYPLSSASPLKGGEWGSLRIRARYSHE 125 (126)
T ss_pred ----CCCCeEEEEEEEHhHc-cCCCcccEeEEcccCCCCCCCcCcEEEEEEEEEcc
Confidence 7999999999999996 45666678999987543 34567999999999864
No 54
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=99.71 E-value=8.3e-17 Score=151.41 Aligned_cols=113 Identities=22% Similarity=0.322 Sum_probs=97.4
Q ss_pred EEEEEeeccCCccCccCCCCCCCCCeEEEEEEC---CEEEEeecccCCCCCeeccEEEEEEeCC-CcEEEEEEEECCCCC
Q 042999 621 LELGILGARGLLPMKTKNGGKGSTDAYCVAKYG---KKWVRTRTITDCFDPRWNEQYTWQVYDP-CTVLTVGVFDNWRMF 696 (1006)
Q Consensus 621 L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~---~~~~rT~~~~~~~nP~wne~~~~~v~~~-~~~l~i~v~d~~~~~ 696 (1006)
|+|+|++|++|++.+ . .|++||||++.++ .+..||++++++.||+|||+|.|.+... ...|.|+|||+|..
T Consensus 2 L~V~vi~a~~L~~~~---~-~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~~- 76 (119)
T cd04036 2 LTVRVLRATNITKGD---L-LSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQVKNVLELTVMDEDYV- 76 (119)
T ss_pred eEEEEEEeeCCCccC---C-CCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCcccCCEEEEEEEECCCC-
Confidence 789999999998854 4 7889999999986 4678999999999999999999998764 45799999999875
Q ss_pred cCCCCCCCCceeEEEEEEcccccCCceEeeEEEeeeeccCCcccccEEEEEEEEe
Q 042999 697 ADASEERPDYRIGKIRIRVSTLENNKVYTTSYPLLVLLRTGLKKMGEIELAVRFV 751 (1006)
Q Consensus 697 ~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~l~l~~~~~ 751 (1006)
+|++||++.++++++..+.....||+|... ..|+|++++.+.
T Consensus 77 -------~~~~iG~~~~~l~~l~~g~~~~~~~~L~~~------~~g~l~~~~~~~ 118 (119)
T cd04036 77 -------MDDHLGTVLFDVSKLKLGEKVRVTFSLNPQ------GKEELEVEFLLE 118 (119)
T ss_pred -------CCcccEEEEEEHHHCCCCCcEEEEEECCCC------CCceEEEEEEee
Confidence 488999999999999999888999999642 249999988763
No 55
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=99.71 E-value=7.4e-17 Score=152.64 Aligned_cols=104 Identities=18% Similarity=0.307 Sum_probs=89.1
Q ss_pred cEEEEEEEeeccCCccCccCCCCCCCCCeEEEEEEC-----CEEEEeecccCCCCCeeccEEEEEEeC---CCcEEEEEE
Q 042999 618 VGILELGILGARGLLPMKTKNGGKGSTDAYCVAKYG-----KKWVRTRTITDCFDPRWNEQYTWQVYD---PCTVLTVGV 689 (1006)
Q Consensus 618 ~g~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~-----~~~~rT~~~~~~~nP~wne~~~~~v~~---~~~~l~i~v 689 (1006)
.+.|.|+|++|+||++++. . .|.+||||++.+. ....||+++++++||+|||.|.|++.. ....|.|+|
T Consensus 14 ~~~L~V~vi~a~~L~~~d~--~-~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~~l~~~~L~~~V 90 (125)
T cd08393 14 LRELHVHVIQCQDLAAADP--K-KQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVEREELPTRVLNLSV 90 (125)
T ss_pred CCEEEEEEEEeCCCCCcCC--C-CCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEECCHHHhCCCEEEEEE
Confidence 4689999999999998652 1 3789999999983 235799999999999999999999864 346899999
Q ss_pred EECCCCCcCCCCCCCCceeEEEEEEcccccCCceEeeEEEee
Q 042999 690 FDNWRMFADASEERPDYRIGKIRIRVSTLENNKVYTTSYPLL 731 (1006)
Q Consensus 690 ~d~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 731 (1006)
||+|.++ ++++||.+.|+|.++..++....||+|.
T Consensus 91 ~d~~~~~-------~~~~iG~~~i~L~~~~~~~~~~~W~~L~ 125 (125)
T cd08393 91 WHRDSLG-------RNSFLGEVEVDLGSWDWSNTQPTWYPLQ 125 (125)
T ss_pred EeCCCCC-------CCcEeEEEEEecCccccCCCCcceEECc
Confidence 9999877 8999999999999998777678999983
No 56
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.71 E-value=8.1e-17 Score=149.23 Aligned_cols=101 Identities=15% Similarity=0.218 Sum_probs=87.0
Q ss_pred EEEEEEeeccCCccCccCCCCCCCCCeEEEEEE-C----C--EEEEeecccCCCCCeeccEEEEEEeCC----CcEEEEE
Q 042999 620 ILELGILGARGLLPMKTKNGGKGSTDAYCVAKY-G----K--KWVRTRTITDCFDPRWNEQYTWQVYDP----CTVLTVG 688 (1006)
Q Consensus 620 ~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~-~----~--~~~rT~~~~~~~nP~wne~~~~~v~~~----~~~l~i~ 688 (1006)
.|+|+|++|++|++.+ .|.+||||+|.+ | . ++.+|+++.+++||+|||+|.|.+... ...|.|.
T Consensus 1 kL~V~Vi~A~~L~~~d-----~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~ 75 (120)
T cd08395 1 KVTVKVVAANDLKWQT-----TGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHIC 75 (120)
T ss_pred CEEEEEEECcCCCccc-----CCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEE
Confidence 3899999999998753 578999999997 3 2 357899999999999999999999742 2469999
Q ss_pred EEECCCCCcCCCCCCCCceeEEEEEEcccccCCceEeeEEEeee
Q 042999 689 VFDNWRMFADASEERPDYRIGKIRIRVSTLENNKVYTTSYPLLV 732 (1006)
Q Consensus 689 v~d~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 732 (1006)
|||+|..+ +|++||++.++++++..++....|++|..
T Consensus 76 V~D~d~~~-------~dd~IG~~~l~l~~~~~~~~~~~w~~L~~ 112 (120)
T cd08395 76 VKDYCFAR-------DDRLVGVTVLQLRDIAQAGSCACWLPLGR 112 (120)
T ss_pred EEEecccC-------CCCEEEEEEEEHHHCcCCCcEEEEEECcC
Confidence 99998765 78999999999999998888889999954
No 57
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=99.71 E-value=1.2e-16 Score=151.82 Aligned_cols=122 Identities=25% Similarity=0.405 Sum_probs=98.6
Q ss_pred EEEEEEeeccCCccCccCCCCCCCCCeEEEEEECCEEEEeecccCCCCCeeccEEEEEEeCCCcEEEEEEEECCCCCcCC
Q 042999 620 ILELGILGARGLLPMKTKNGGKGSTDAYCVAKYGKKWVRTRTITDCFDPRWNEQYTWQVYDPCTVLTVGVFDNWRMFADA 699 (1006)
Q Consensus 620 ~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~~~~~rT~~~~~~~nP~wne~~~~~v~~~~~~l~i~v~d~~~~~~~~ 699 (1006)
.|+|+|++|++|+.+| . .|.+||||++.++++..+|+++.+++||.|||.|.|.+..+...|.|+|||+|....++
T Consensus 2 ~L~V~vi~a~~L~~~d---~-~g~~DPyv~v~~~~~~~kT~~v~~t~~P~Wne~f~f~~~~~~~~l~i~v~d~d~~~~~~ 77 (127)
T cd04027 2 KISITVVCAQGLIAKD---K-TGTSDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFECHNSSDRIKVRVWDEDDDIKSR 77 (127)
T ss_pred eEEEEEEECcCCcCCC---C-CCCcCcEEEEEECCEeeecceecCCCCCccceEEEEEecCCCCEEEEEEEECCCCcccc
Confidence 5899999999998854 4 78899999999999999999999999999999999999877788999999998531000
Q ss_pred ----CCCCCCceeEEEEEEcccccCCceEeeEEEeeeeccCCcccccEEEEEE
Q 042999 700 ----SEERPDYRIGKIRIRVSTLENNKVYTTSYPLLVLLRTGLKKMGEIELAV 748 (1006)
Q Consensus 700 ----~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~l~l~~ 748 (1006)
-...+|++||.+.+++.++.... ..||+|......+. ..|+|.|++
T Consensus 78 ~~~~~~~~~~~~iG~~~i~l~~~~~~~--~~w~~L~~~~~~~~-~~G~i~~~~ 127 (127)
T cd04027 78 LKQKFTRESDDFLGQTIIEVRTLSGEM--DVWYNLEKRTDKSA-VSGAIRLHI 127 (127)
T ss_pred cceeccccCCCcceEEEEEhHHccCCC--CeEEECccCCCCCc-EeEEEEEEC
Confidence 00016899999999999886444 79999987653332 359998864
No 58
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=99.71 E-value=1.6e-16 Score=149.70 Aligned_cols=118 Identities=29% Similarity=0.496 Sum_probs=103.8
Q ss_pred cEEEEEEEEecCCCCCCCCCCCCcEEEEEECCeEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEeCCCCCCC
Q 042999 16 RKLVVEVVDARDLLPKDGQGSSSPYVIADFDGQRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYNDKRYCNG 95 (1006)
Q Consensus 16 ~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~d~~~~~ 95 (1006)
|.|.|+|++|++|+.++..+.+||||++.+++...+|++++++.||.|||+|.|.+... ...|.|+|||++..
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~~~~~~~----~~~l~~~v~d~~~~--- 73 (119)
T cd08377 1 GFLQVKVIRASGLAAADIGGKSDPFCVLELVNARLQTHTIYKTLNPEWNKIFTFPIKDI----HDVLEVTVYDEDKD--- 73 (119)
T ss_pred CEEEEEEEeeeCCCCCCCCCCCCcEEEEEECCEeeecceecCCcCCccCcEEEEEecCc----CCEEEEEEEECCCC---
Confidence 57999999999999999889999999999998889999999999999999999998653 46899999999987
Q ss_pred CCCCCceeEEEEEeCeeeeeeCCceeEEEEceecCCceeeeEEEEEEEEE
Q 042999 96 SGRKNHFLGRVKLCGSQFARRGDEGLVYFPLEKKSVFSWIRGEIGLRIYY 145 (1006)
Q Consensus 96 ~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~ 145 (1006)
+++++||++.+++.++. .+ ...|+.|.+.....+.+|+|.+++.+
T Consensus 74 --~~~~~iG~~~~~l~~~~-~~--~~~~~~l~~~~~~~~~~G~i~l~~~~ 118 (119)
T cd08377 74 --KKPEFLGKVAIPLLSIK-NG--ERKWYALKDKKLRTRAKGSILLEMDV 118 (119)
T ss_pred --CCCceeeEEEEEHHHCC-CC--CceEEECcccCCCCceeeEEEEEEEe
Confidence 68999999999999863 33 24799998766566679999999876
No 59
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=99.71 E-value=2e-16 Score=150.09 Aligned_cols=122 Identities=25% Similarity=0.428 Sum_probs=104.2
Q ss_pred ccEEEEEEEEecCCCCCCCCCCCCcEEEEEECCeEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEeCCCCCC
Q 042999 15 VRKLVVEVVDARDLLPKDGQGSSSPYVIADFDGQRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYNDKRYCN 94 (1006)
Q Consensus 15 ~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~d~~~~ 94 (1006)
...|+|+|++|++|...+..|.+||||++.+++++++|++++++.||+|||.|.|.+... ...|.|+|||++..
T Consensus 2 ~~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~----~~~l~i~V~d~~~~-- 75 (126)
T cd04046 2 QVVTQVHVHSAEGLSKQDSGGGADPYVIIKCEGESVRSPVQKDTLSPEFDTQAIFYRKKP----RSPIKIQVWNSNLL-- 75 (126)
T ss_pred cEEEEEEEEeCcCCCCCCCCCCcCccEEEEECCEEEEeCccCCCCCCcccceEEEEecCC----CCEEEEEEEECCCC--
Confidence 468999999999999998889999999999999999999999999999999999988764 56899999999987
Q ss_pred CCCCCCceeEEEEEeCeeeeeeCCceeEEEEceecC--CceeeeEEEEEEEEEEecC
Q 042999 95 GSGRKNHFLGRVKLCGSQFARRGDEGLVYFPLEKKS--VFSWIRGEIGLRIYYYDEL 149 (1006)
Q Consensus 95 ~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~--~~~~~~G~i~l~~~~~~~~ 149 (1006)
+|++||.+.++++.+ . .....|++|.+.. ..++..|+|.+++...+..
T Consensus 76 ----~d~~lG~~~~~l~~~-~--~~~~~~~~l~~~~~~~~~~~~G~i~~~~~~~~~~ 125 (126)
T cd04046 76 ----CDEFLGQATLSADPN-D--SQTLRTLPLRKRGRDAAGEVPGTISVKVTSSDDL 125 (126)
T ss_pred ----CCCceEEEEEecccC-C--CcCceEEEcccCCCCCCCCCCCEEEEEEEEcccc
Confidence 589999999999874 2 3334788886432 4456789999999887753
No 60
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=99.71 E-value=5.5e-17 Score=152.59 Aligned_cols=105 Identities=24% Similarity=0.349 Sum_probs=90.1
Q ss_pred ccEEEEEEEEecCCCCCCCCCCCCcEEEEEEC-----CeEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEeC
Q 042999 15 VRKLVVEVVDARDLLPKDGQGSSSPYVIADFD-----GQRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYND 89 (1006)
Q Consensus 15 ~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~-----~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~ 89 (1006)
.+.|.|+|++|++|+.++ .+.+||||++++. ..+++|++++++.||+|||+|.|.+....+.....|.|+|||+
T Consensus 12 ~~~L~V~Vi~A~~L~~~~-~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~d~ 90 (122)
T cd08381 12 NGTLFVMVMHAKNLPLLD-GSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVWSH 90 (122)
T ss_pred CCEEEEEEEEeeCCCCCC-CCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChHHhCCCEEEEEEEeC
Confidence 468999999999999999 8999999999995 3568999999999999999999997332233367899999999
Q ss_pred CCCCCCCCCCCceeEEEEEeCeeeeeeCCceeEEEEc
Q 042999 90 KRYCNGSGRKNHFLGRVKLCGSQFARRGDEGLVYFPL 126 (1006)
Q Consensus 90 d~~~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L 126 (1006)
+.+ +++++||++.++++++ ..+.....||+|
T Consensus 91 d~~-----~~~~~lG~~~i~l~~l-~~~~~~~~W~~L 121 (122)
T cd08381 91 DSL-----VENEFLGGVCIPLKKL-DLSQETEKWYPL 121 (122)
T ss_pred CCC-----cCCcEEEEEEEecccc-ccCCCccceEEC
Confidence 998 7899999999999996 445555689987
No 61
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=99.71 E-value=4.9e-17 Score=148.11 Aligned_cols=103 Identities=17% Similarity=0.226 Sum_probs=86.6
Q ss_pred cccEEEEEEEEecCCCCCCCCCCCCcEEEEEECC----eEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEeC
Q 042999 14 TVRKLVVEVVDARDLLPKDGQGSSSPYVIADFDG----QRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYND 89 (1006)
Q Consensus 14 ~~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~----~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~ 89 (1006)
..+.|+|+|++|++|+ . .|.+||||++++.. .+++|+++++|+||+|||+|.|.+... ++.+..|.|.|||+
T Consensus 12 ~~~~L~V~vikA~~L~-~--~g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~v~~~-~l~~~tL~~~V~d~ 87 (118)
T cd08677 12 QKAELHVNILEAENIS-V--DAGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFPLPEE-ESLDGTLTLTLRCC 87 (118)
T ss_pred cCCEEEEEEEEecCCC-C--CCCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEeCCHH-HhCCcEEEEEEEeC
Confidence 3678999999999998 3 36699999999952 568999999999999999999998764 44478899999999
Q ss_pred CCCCCCCCCCCceeEEEEEeCeeeeeeCCceeEEEEc
Q 042999 90 KRYCNGSGRKNHFLGRVKLCGSQFARRGDEGLVYFPL 126 (1006)
Q Consensus 90 d~~~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L 126 (1006)
|++ +++++||++.++++++ ..+....+|..|
T Consensus 88 Drf-----s~~d~IG~v~l~l~~~-~~~~~~~~W~~~ 118 (118)
T cd08677 88 DRF-----SRHSTLGELRLKLADV-SMMLGAAQWVDL 118 (118)
T ss_pred CCC-----CCCceEEEEEEccccc-cCCccccchhcC
Confidence 999 8999999999999984 444445567654
No 62
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.70 E-value=1.1e-16 Score=152.03 Aligned_cols=121 Identities=29% Similarity=0.377 Sum_probs=101.0
Q ss_pred cEEEEEEEeeccCCccCccCCCCCCCCCeEEEEEECC--EEEEeecccCCCCCeeccEEEEEEeCCCcEEEEEEEECCCC
Q 042999 618 VGILELGILGARGLLPMKTKNGGKGSTDAYCVAKYGK--KWVRTRTITDCFDPRWNEQYTWQVYDPCTVLTVGVFDNWRM 695 (1006)
Q Consensus 618 ~g~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~~--~~~rT~~~~~~~nP~wne~~~~~v~~~~~~l~i~v~d~~~~ 695 (1006)
+|.|+|+|++|++|+..+ .. .+.+||||++.+++ +..||+++.++.||.|||.|.|.+......|.|+|||++..
T Consensus 1 ~g~l~v~v~~a~~L~~~~--~~-~~~~dpyv~v~~~~~~~~~kT~~~~~~~~P~Wne~~~~~v~~~~~~l~~~v~d~~~~ 77 (124)
T cd04044 1 IGVLAVTIKSARGLKGSD--II-GGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILVNSLTEPLNLTVYDFNDK 77 (124)
T ss_pred CeEEEEEEEcccCCCccc--cc-CCCCCCeEEEEECCCCcceEeeeecCCCCCcceEEEEEEeCCCCCEEEEEEEecCCC
Confidence 589999999999998643 12 56799999999987 78999999999999999999999987688999999999987
Q ss_pred CcCCCCCCCCceeEEEEEEcccccCCceEe-eEEEeeeeccCCcccccEEEEEEEEec
Q 042999 696 FADASEERPDYRIGKIRIRVSTLENNKVYT-TSYPLLVLLRTGLKKMGEIELAVRFVC 752 (1006)
Q Consensus 696 ~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~-~~~~L~~~~~~g~~~~G~l~l~~~~~~ 752 (1006)
+ +|++||++.++|.++..+...+ .+++|.. .| +..|+|+++++|.|
T Consensus 78 ~-------~d~~iG~~~~~l~~l~~~~~~~~~~~~~~~---~~-k~~G~i~~~l~~~p 124 (124)
T cd04044 78 R-------KDKLIGTAEFDLSSLLQNPEQENLTKNLLR---NG-KPVGELNYDLRFFP 124 (124)
T ss_pred C-------CCceeEEEEEEHHHhccCccccCcchhhhc---CC-ccceEEEEEEEeCC
Confidence 6 7999999999999998776554 3455532 22 34599999999963
No 63
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=99.70 E-value=8.5e-17 Score=147.35 Aligned_cols=97 Identities=20% Similarity=0.305 Sum_probs=84.3
Q ss_pred EEEEEEEeeccCCccCccCCCCCCCCCeEEEEEECCEEEEeecccCCCCCeeccEEEEEEeCC--CcEEEEEEEECCCCC
Q 042999 619 GILELGILGARGLLPMKTKNGGKGSTDAYCVAKYGKKWVRTRTITDCFDPRWNEQYTWQVYDP--CTVLTVGVFDNWRMF 696 (1006)
Q Consensus 619 g~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~~~~~rT~~~~~~~nP~wne~~~~~v~~~--~~~l~i~v~d~~~~~ 696 (1006)
|.|.|+|++|++|++.+......+.+||||++.++++.+||+++++++||+|||.|.|++.+. ...|.|.|||+|.++
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~~~~kT~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d~~~ 80 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGRRVFRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKDKFS 80 (108)
T ss_pred CEEEEEEEeeeCCCCccccCCCCCccCceEEEEECCEeEeeeeecCCCCCcccceEEEEEeCccCCCEEEEEEEECCCCC
Confidence 789999999999999764221134689999999999999999999999999999999998763 347999999999887
Q ss_pred cCCCCCCCCceeEEEEEEcccccCCc
Q 042999 697 ADASEERPDYRIGKIRIRVSTLENNK 722 (1006)
Q Consensus 697 ~~~~~~~~d~~lG~~~i~l~~l~~~~ 722 (1006)
+|++||++.++|++|..+.
T Consensus 81 -------~dd~IG~~~l~L~~l~~~~ 99 (108)
T cd04039 81 -------FNDYVATGSLSVQELLNAA 99 (108)
T ss_pred -------CCcceEEEEEEHHHHHhhC
Confidence 8999999999999997654
No 64
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.70 E-value=9.2e-17 Score=153.81 Aligned_cols=105 Identities=25% Similarity=0.304 Sum_probs=90.8
Q ss_pred EEEEEEEeeccCCccCccCCCCCCCCCeEEEEEEC--C---EEEEeecccCCCCCeeccEEEEEEeCCCcEEEEEEE-EC
Q 042999 619 GILELGILGARGLLPMKTKNGGKGSTDAYCVAKYG--K---KWVRTRTITDCFDPRWNEQYTWQVYDPCTVLTVGVF-DN 692 (1006)
Q Consensus 619 g~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~--~---~~~rT~~~~~~~nP~wne~~~~~v~~~~~~l~i~v~-d~ 692 (1006)
|.|.|+|++|+||++++ +. .|.+||||++++. + .+.||+++++++||+|||+|.|++......|.|+|| |+
T Consensus 29 ~~L~V~Vi~ArnL~~~~--~~-~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~l~~~~L~v~V~~d~ 105 (146)
T cd04028 29 GQLEVEVIRARGLVQKP--GS-KVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDVSPTGKTLQVIVWGDY 105 (146)
T ss_pred CEEEEEEEEeeCCCccc--CC-CCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEEcCCCCEEEEEEEeCC
Confidence 68999999999998753 23 6789999999993 3 367999999999999999999999866779999999 57
Q ss_pred CCCCcCCCCCCCCceeEEEEEEcccccCCceEeeEEEeeee
Q 042999 693 WRMFADASEERPDYRIGKIRIRVSTLENNKVYTTSYPLLVL 733 (1006)
Q Consensus 693 ~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~ 733 (1006)
+.+. ++++||.+.|+|+++..+.....||+|...
T Consensus 106 ~~~~-------~~~~iG~~~i~L~~l~~~~~~~~Wy~L~~~ 139 (146)
T cd04028 106 GRMD-------KKVFMGVAQILLDDLDLSNLVIGWYKLFPT 139 (146)
T ss_pred CCCC-------CCceEEEEEEEcccccCCCCceeEEecCCc
Confidence 7665 789999999999999877777899999763
No 65
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=99.70 E-value=8.3e-17 Score=146.59 Aligned_cols=101 Identities=15% Similarity=0.157 Sum_probs=85.3
Q ss_pred CCcEEEEEEEeeccCCccCccCCCCCCCCCeEEEEEECC----EEEEeecccCCCCCeeccEEEEEEeC---CCcEEEEE
Q 042999 616 PPVGILELGILGARGLLPMKTKNGGKGSTDAYCVAKYGK----KWVRTRTITDCFDPRWNEQYTWQVYD---PCTVLTVG 688 (1006)
Q Consensus 616 ~~~g~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~~----~~~rT~~~~~~~nP~wne~~~~~v~~---~~~~l~i~ 688 (1006)
+..|.|.|+|++|++|+. .|.+||||++.+.. .+.+|++.++|+||+|||+|.|+|.. +...|.|+
T Consensus 11 ~~~~~L~V~vikA~~L~~-------~g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~v~~~~l~~~tL~~~ 83 (118)
T cd08677 11 KQKAELHVNILEAENISV-------DAGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFPLPEEESLDGTLTLT 83 (118)
T ss_pred CcCCEEEEEEEEecCCCC-------CCCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEeCCHHHhCCcEEEEE
Confidence 356899999999999972 45699999999853 46799999999999999999999865 45689999
Q ss_pred EEECCCCCcCCCCCCCCceeEEEEEEcccccCCceEeeEEEe
Q 042999 689 VFDNWRMFADASEERPDYRIGKIRIRVSTLENNKVYTTSYPL 730 (1006)
Q Consensus 689 v~d~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L 730 (1006)
|||+|+++ ++++||++.+++.++..+...++|..|
T Consensus 84 V~d~Drfs-------~~d~IG~v~l~l~~~~~~~~~~~W~~~ 118 (118)
T cd08677 84 LRCCDRFS-------RHSTLGELRLKLADVSMMLGAAQWVDL 118 (118)
T ss_pred EEeCCCCC-------CCceEEEEEEccccccCCccccchhcC
Confidence 99999998 899999999999987555444677654
No 66
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.70 E-value=3e-16 Score=150.55 Aligned_cols=119 Identities=22% Similarity=0.278 Sum_probs=100.5
Q ss_pred cEEEEEEEeeccCCccCccCC---C---CCCCCCeEEEEEECCEE-EEeecccCCCCCeeccEEEEEEeCCCcEEEEEEE
Q 042999 618 VGILELGILGARGLLPMKTKN---G---GKGSTDAYCVAKYGKKW-VRTRTITDCFDPRWNEQYTWQVYDPCTVLTVGVF 690 (1006)
Q Consensus 618 ~g~L~v~v~~a~~L~~~~~~d---~---~~g~sdpyv~v~~~~~~-~rT~~~~~~~nP~wne~~~~~v~~~~~~l~i~v~ 690 (1006)
.|.|+|+|++|++|++.+..- . +.|.+||||++.++++. .+|+++++++||.|||+|.|++. ....|.|.||
T Consensus 3 ~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~-~~~~l~~~v~ 81 (132)
T cd04014 3 TGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTSTKPKTNSPVWNEEFTTEVH-NGRNLELTVF 81 (132)
T ss_pred ceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEEeEEeEcCCCCCCCcceeEEEEcC-CCCEEEEEEE
Confidence 589999999999998865310 0 03689999999999866 59999999999999999999996 4578999999
Q ss_pred ECCCCCcCCCCCCCCceeEEEEEEcccccC--CceEeeEEEeeeeccCCcccccEEEEEEEEec
Q 042999 691 DNWRMFADASEERPDYRIGKIRIRVSTLEN--NKVYTTSYPLLVLLRTGLKKMGEIELAVRFVC 752 (1006)
Q Consensus 691 d~~~~~~~~~~~~~d~~lG~~~i~l~~l~~--~~~~~~~~~L~~~~~~g~~~~G~l~l~~~~~~ 752 (1006)
|++.++ +|++||++.++|.++.. +...+.||+|. +.|+|+|++.|..
T Consensus 82 d~~~~~-------~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~--------~~G~l~l~~~~~~ 130 (132)
T cd04014 82 HDAAIG-------PDDFVANCTISFEDLIQRGSGSFDLWVDLE--------PQGKLHVKIELKG 130 (132)
T ss_pred eCCCCC-------CCceEEEEEEEhHHhcccCCCcccEEEEcc--------CCcEEEEEEEEec
Confidence 998876 78999999999999887 45568999994 2499999999975
No 67
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=99.70 E-value=1.9e-16 Score=150.05 Aligned_cols=118 Identities=31% Similarity=0.470 Sum_probs=100.9
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEECCeEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEeCCCCCCCC
Q 042999 17 KLVVEVVDARDLLPKDGQGSSSPYVIADFDGQRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYNDKRYCNGS 96 (1006)
Q Consensus 17 ~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~d~~~~~~ 96 (1006)
+|+|+|++|++|..++..+.+||||+++++++..+|+++++++||+|||+|.|.+.... ...|.|+|||++..
T Consensus 1 ~L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~---~~~l~~~v~d~~~~---- 73 (123)
T cd04025 1 RLRCHVLEARDLAPKDRNGTSDPFVRVFYNGQTLETSVVKKSCYPRWNEVFEFELMEGA---DSPLSVEVWDWDLV---- 73 (123)
T ss_pred CEEEEEEEeeCCCCCCCCCCcCceEEEEECCEEEeceeecCCCCCccCcEEEEEcCCCC---CCEEEEEEEECCCC----
Confidence 48999999999999998889999999999999999999999999999999999987743 46899999999998
Q ss_pred CCCCceeEEEEEeCeeeeeeCCceeEEEEceecCC----ceeeeEEEEEEE
Q 042999 97 GRKNHFLGRVKLCGSQFARRGDEGLVYFPLEKKSV----FSWIRGEIGLRI 143 (1006)
Q Consensus 97 ~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~~----~~~~~G~i~l~~ 143 (1006)
+++++||.+.++++++.. +.....|+.|.+.+. ..+..|.|.+.|
T Consensus 74 -~~~~~iG~~~~~l~~l~~-~~~~~~w~~L~~~~~~~~~~~~~~G~l~~~~ 122 (123)
T cd04025 74 -SKNDFLGKVVFSIQTLQQ-AKQEEGWFRLLPDPRAEEESGGNLGSLRLKV 122 (123)
T ss_pred -CCCcEeEEEEEEHHHccc-CCCCCCEEECCCCCCCCccccCceEEEEEEe
Confidence 789999999999999643 444567999986432 234679998876
No 68
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=99.69 E-value=1.9e-16 Score=149.00 Aligned_cols=113 Identities=27% Similarity=0.416 Sum_probs=98.3
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEEC---CeEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEeCCCCCC
Q 042999 18 LVVEVVDARDLLPKDGQGSSSPYVIADFD---GQRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYNDKRYCN 94 (1006)
Q Consensus 18 L~V~v~~a~~L~~~~~~g~~dPyv~v~~~---~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~d~~~~ 94 (1006)
|.|+|++|++|+..+..+.+||||++.++ ..+++|++++++.||+|||+|.|.+.... ...|.|+|||++..
T Consensus 2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~~---~~~l~v~v~d~d~~-- 76 (119)
T cd04036 2 LTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQV---KNVLELTVMDEDYV-- 76 (119)
T ss_pred eEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCccc---CCEEEEEEEECCCC--
Confidence 78999999999998888899999999996 36689999999999999999999987642 45799999999987
Q ss_pred CCCCCCceeEEEEEeCeeeeeeCCceeEEEEceecCCceeeeEEEEEEEEE
Q 042999 95 GSGRKNHFLGRVKLCGSQFARRGDEGLVYFPLEKKSVFSWIRGEIGLRIYY 145 (1006)
Q Consensus 95 ~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~ 145 (1006)
++++||++.++++++ ..+.....|++|.+.+ +|++.+++.+
T Consensus 77 ----~~~~iG~~~~~l~~l-~~g~~~~~~~~L~~~~-----~g~l~~~~~~ 117 (119)
T cd04036 77 ----MDDHLGTVLFDVSKL-KLGEKVRVTFSLNPQG-----KEELEVEFLL 117 (119)
T ss_pred ----CCcccEEEEEEHHHC-CCCCcEEEEEECCCCC-----CceEEEEEEe
Confidence 789999999999995 5666777899998654 7888888765
No 69
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=99.69 E-value=2.1e-16 Score=149.25 Aligned_cols=116 Identities=26% Similarity=0.450 Sum_probs=100.1
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEEC-CeEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEeCCCCCCCC
Q 042999 18 LVVEVVDARDLLPKDGQGSSSPYVIADFD-GQRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYNDKRYCNGS 96 (1006)
Q Consensus 18 L~V~v~~a~~L~~~~~~g~~dPyv~v~~~-~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~d~~~~~~ 96 (1006)
|+|+|++|++|+.++..+.+||||+++++ .+.++|+++++++||.|||+|.|.+.. ...|.|+|||++.+
T Consensus 2 l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~-----~~~l~i~V~d~~~~---- 72 (123)
T cd08382 2 VRLTVLCADGLAKRDLFRLPDPFAVITVDGGQTHSTDVAKKTLDPKWNEHFDLTVGP-----SSIITIQVFDQKKF---- 72 (123)
T ss_pred eEEEEEEecCCCccCCCCCCCcEEEEEECCccceEccEEcCCCCCcccceEEEEeCC-----CCEEEEEEEECCCC----
Confidence 78999999999999988999999999996 677999999999999999999999965 45899999999988
Q ss_pred CCC--CceeEEEEEeCeeeeeeCCceeEEEEceecCC--ceeeeEEEEEEE
Q 042999 97 GRK--NHFLGRVKLCGSQFARRGDEGLVYFPLEKKSV--FSWIRGEIGLRI 143 (1006)
Q Consensus 97 ~~~--d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~~--~~~~~G~i~l~~ 143 (1006)
++ +++||++.+++.+++........|++|.+.+. .....|+|.+++
T Consensus 73 -~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~G~v~~~~ 122 (123)
T cd08382 73 -KKKDQGFLGCVRIRANAVLPLKDTGYQRLDLRKLKKSDNLSVRGKIVVSL 122 (123)
T ss_pred -CCCCCceEeEEEEEHHHccccCCCccceeEeecCCCCCCceEeeEEEEEe
Confidence 43 58999999999998665555567999976554 455689998876
No 70
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.69 E-value=1.1e-16 Score=154.38 Aligned_cols=116 Identities=19% Similarity=0.244 Sum_probs=94.5
Q ss_pred EEEEEEeeccCCccCccCCCCCCCCCeEEEEEECC-----EEEEeecccCCCCCeeccEEEEEEe---------------
Q 042999 620 ILELGILGARGLLPMKTKNGGKGSTDAYCVAKYGK-----KWVRTRTITDCFDPRWNEQYTWQVY--------------- 679 (1006)
Q Consensus 620 ~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~~-----~~~rT~~~~~~~nP~wne~~~~~v~--------------- 679 (1006)
.|.|+|++|+||++ . +|.+||||+|.+++ ...||+++++|+||+|||.|.|++.
T Consensus 1 kL~V~Vi~ArnL~~-----~-~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~ 74 (148)
T cd04010 1 KLSVRVIECSDLAL-----K-NGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEE 74 (148)
T ss_pred CEEEEEEeCcCCCC-----C-CCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcc
Confidence 38999999999976 2 77899999999965 5779999999999999999999995
Q ss_pred C-CCcEEEEEEEECCCCCcCCCCCCCCceeEEEEEEcccccCC-ceEeeEEEeeeeccCC---------cccccEEEEEE
Q 042999 680 D-PCTVLTVGVFDNWRMFADASEERPDYRIGKIRIRVSTLENN-KVYTTSYPLLVLLRTG---------LKKMGEIELAV 748 (1006)
Q Consensus 680 ~-~~~~l~i~v~d~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~-~~~~~~~~L~~~~~~g---------~~~~G~l~l~~ 748 (1006)
+ ....|.|.|||++..+ .|++||++.|+|..+..+ .....||+|....... ....|.|+|.+
T Consensus 75 ~~~~~~L~i~V~d~~~~~-------~ddfLG~v~i~l~~l~~~~~~~~~W~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (148)
T cd04010 75 DAEKLELRVDLWHASMGG-------GDVFLGEVRIPLRGLDLQAGSHQAWYFLQPREEKSTPPGTRSSKDNSLGSLRLKI 147 (148)
T ss_pred cccEEEEEEEEEcCCCCC-------CCceeEEEEEecccccccCCcCcceeecCCcccccCCCCCcccccCCcccEEEec
Confidence 1 1247999999999876 799999999999999876 5568999997754321 12237777765
No 71
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=99.69 E-value=2.2e-16 Score=149.44 Aligned_cols=115 Identities=32% Similarity=0.552 Sum_probs=99.5
Q ss_pred cEEEEEEEEecCCCCCCC------CCCCCcEEEEEECCeEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEeC
Q 042999 16 RKLVVEVVDARDLLPKDG------QGSSSPYVIADFDGQRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYND 89 (1006)
Q Consensus 16 ~~L~V~v~~a~~L~~~~~------~g~~dPyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~ 89 (1006)
|.|+|+|++|++|+.++. .|.+||||++.++++.++|++++++.||.|||+|.|.+.... ...|.|+|||+
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~~~~kT~~~~~t~~P~W~e~f~~~v~~~~---~~~l~i~v~d~ 77 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEVYEAVVDEVP---GQELEIELFDE 77 (121)
T ss_pred CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECCEeEEccccCCCCCCcccceEEEEeCCCC---CCEEEEEEEec
Confidence 579999999999998874 368999999999999999999999999999999999987643 56899999999
Q ss_pred CCCCCCCCCCCceeEEEEEeCeeeeeeCCceeEEEEceecCCceeeeEEEEEEEEE
Q 042999 90 KRYCNGSGRKNHFLGRVKLCGSQFARRGDEGLVYFPLEKKSVFSWIRGEIGLRIYY 145 (1006)
Q Consensus 90 d~~~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~ 145 (1006)
+.. ++++||.+.++++++.. +.....|++|.+.. .|+|+++++|
T Consensus 78 ~~~------~~~~iG~~~i~l~~l~~-~~~~~~w~~L~~~~-----~G~~~~~~~~ 121 (121)
T cd08391 78 DPD------KDDFLGRLSIDLGSVEK-KGFIDEWLPLEDVK-----SGRLHLKLEW 121 (121)
T ss_pred CCC------CCCcEEEEEEEHHHhcc-cCccceEEECcCCC-----CceEEEEEeC
Confidence 987 78999999999999754 44457899998642 7999998865
No 72
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.69 E-value=1.1e-16 Score=154.45 Aligned_cols=108 Identities=23% Similarity=0.369 Sum_probs=89.0
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEECC-----eEEEeeCcCCCCCCeeeeEEEEEee------------CCCCCCC
Q 042999 17 KLVVEVVDARDLLPKDGQGSSSPYVIADFDG-----QRKRTSTKFRDLNPVWNEPLEFIVS------------DPKNMDC 79 (1006)
Q Consensus 17 ~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~-----~~~kT~~~~~t~nP~wne~f~f~~~------------~~~~~~~ 79 (1006)
.|.|+|++|++|.. ..|.+||||+|.+.+ ++++|+++++++||+|||+|.|.+. ...+...
T Consensus 1 kL~V~Vi~ArnL~~--~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~ 78 (148)
T cd04010 1 KLSVRVIECSDLAL--KNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEK 78 (148)
T ss_pred CEEEEEEeCcCCCC--CCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccE
Confidence 48899999999987 468999999999975 6689999999999999999999985 1122224
Q ss_pred ceEEEEEEeCCCCCCCCCCCCceeEEEEEeCeeeeeeCCceeEEEEceecCC
Q 042999 80 EELEIEVYNDKRYCNGSGRKNHFLGRVKLCGSQFARRGDEGLVYFPLEKKSV 131 (1006)
Q Consensus 80 ~~L~i~V~d~d~~~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~~ 131 (1006)
..|.|.|||++.. ++|+|||++.+++..+.........||+|.+.+.
T Consensus 79 ~~L~i~V~d~~~~-----~~ddfLG~v~i~l~~l~~~~~~~~~W~~L~~~~~ 125 (148)
T cd04010 79 LELRVDLWHASMG-----GGDVFLGEVRIPLRGLDLQAGSHQAWYFLQPREE 125 (148)
T ss_pred EEEEEEEEcCCCC-----CCCceeEEEEEecccccccCCcCcceeecCCccc
Confidence 6799999999998 7899999999999996433244568999986553
No 73
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=99.69 E-value=1e-16 Score=148.20 Aligned_cols=102 Identities=25% Similarity=0.401 Sum_probs=90.1
Q ss_pred EEEEEeeccCCccCccCCCCCCCCCeEEEEEECCEEEEeecccCCCCCee-ccEEEEEEeCC---CcEEEEEEEECCCCC
Q 042999 621 LELGILGARGLLPMKTKNGGKGSTDAYCVAKYGKKWVRTRTITDCFDPRW-NEQYTWQVYDP---CTVLTVGVFDNWRMF 696 (1006)
Q Consensus 621 L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~~~~~rT~~~~~~~nP~w-ne~~~~~v~~~---~~~l~i~v~d~~~~~ 696 (1006)
|+|+|++|+||++++. . .|.+||||++.++++..||+++++++||.| ||.|.|.+... ...|.|+|||++.++
T Consensus 1 l~V~v~~a~~L~~~d~--~-~~~~Dpyv~v~~~~~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~~ 77 (110)
T cd08688 1 LKVRVVAARDLPVMDR--S-SDLTDAFVEVKFGSTTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTYS 77 (110)
T ss_pred CEEEEEEEECCCcccc--C-CCCCCceEEEEECCeeEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCCCC
Confidence 6899999999998652 2 678999999999999999999999999999 99999999763 468999999999887
Q ss_pred cCCCCCCCCceeEEEEEEcccccC---CceEeeEEEeee
Q 042999 697 ADASEERPDYRIGKIRIRVSTLEN---NKVYTTSYPLLV 732 (1006)
Q Consensus 697 ~~~~~~~~d~~lG~~~i~l~~l~~---~~~~~~~~~L~~ 732 (1006)
+|++||++.+++.++.. +...+.||+|.+
T Consensus 78 -------~~~~iG~~~~~l~~l~~~~~~~~~~~w~~l~~ 109 (110)
T cd08688 78 -------ANDAIGKVYIDLNPLLLKDSVSQISGWFPIYD 109 (110)
T ss_pred -------CCCceEEEEEeHHHhcccCCccccCCeEEccc
Confidence 78999999999999977 345789999964
No 74
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=99.69 E-value=3.3e-16 Score=148.88 Aligned_cols=120 Identities=32% Similarity=0.547 Sum_probs=100.8
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEECCeEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEeCCCCCCC-
Q 042999 17 KLVVEVVDARDLLPKDGQGSSSPYVIADFDGQRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYNDKRYCNG- 95 (1006)
Q Consensus 17 ~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~d~~~~~- 95 (1006)
.|+|+|++|++|+.++..|.+||||++.++++.++|+++.+++||.|||+|.|.+... ...|.|+|||+|.....
T Consensus 2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~v~~t~~P~Wne~f~f~~~~~----~~~l~i~v~d~d~~~~~~ 77 (127)
T cd04027 2 KISITVVCAQGLIAKDKTGTSDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFECHNS----SDRIKVRVWDEDDDIKSR 77 (127)
T ss_pred eEEEEEEECcCCcCCCCCCCcCcEEEEEECCEeeecceecCCCCCccceEEEEEecCC----CCEEEEEEEECCCCcccc
Confidence 6899999999999999889999999999998889999999999999999999988654 35799999999852100
Q ss_pred -----CCCCCceeEEEEEeCeeeeeeCCceeEEEEceecCCceeeeEEEEEEE
Q 042999 96 -----SGRKNHFLGRVKLCGSQFARRGDEGLVYFPLEKKSVFSWIRGEIGLRI 143 (1006)
Q Consensus 96 -----~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~ 143 (1006)
..+.+++||.+.+++.++ . ....+|+.|.+.+.++..+|+|.+++
T Consensus 78 ~~~~~~~~~~~~iG~~~i~l~~~-~--~~~~~w~~L~~~~~~~~~~G~i~~~~ 127 (127)
T cd04027 78 LKQKFTRESDDFLGQTIIEVRTL-S--GEMDVWYNLEKRTDKSAVSGAIRLHI 127 (127)
T ss_pred cceeccccCCCcceEEEEEhHHc-c--CCCCeEEECccCCCCCcEeEEEEEEC
Confidence 013689999999999885 2 33458999998877778899999874
No 75
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=99.69 E-value=2.5e-16 Score=149.46 Aligned_cols=104 Identities=19% Similarity=0.349 Sum_probs=91.5
Q ss_pred CcEEEEEEEeeccCCccCccCCCCCCCCCeEEEEEEC---CEEEEeecccCCCCCeeccEEEEEEeCC---CcEEEEEEE
Q 042999 617 PVGILELGILGARGLLPMKTKNGGKGSTDAYCVAKYG---KKWVRTRTITDCFDPRWNEQYTWQVYDP---CTVLTVGVF 690 (1006)
Q Consensus 617 ~~g~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~---~~~~rT~~~~~~~nP~wne~~~~~v~~~---~~~l~i~v~ 690 (1006)
..|.|.|+|++|+||++++ . .|.+||||++.++ ++..||+++++++||+|||.|.|.+... ...|.|+||
T Consensus 14 ~~~~L~V~v~~a~~L~~~d---~-~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~i~V~ 89 (124)
T cd08387 14 DMGILNVKLIQARNLQPRD---F-SGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFEVPPQELPKRTLEVLLY 89 (124)
T ss_pred CCCEEEEEEEEeeCCCCCC---C-CCCCCCeEEEEEecCCCCcEeCceEcCCCCCCcccEEEEeCCHHHhCCCEEEEEEE
Confidence 4579999999999998854 4 7889999999983 4568999999999999999999998653 468999999
Q ss_pred ECCCCCcCCCCCCCCceeEEEEEEcccccCCceEeeEEEee
Q 042999 691 DNWRMFADASEERPDYRIGKIRIRVSTLENNKVYTTSYPLL 731 (1006)
Q Consensus 691 d~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 731 (1006)
|++.++ +|++||.+.|+|+++..+...+.||+|.
T Consensus 90 d~~~~~-------~~~~iG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08387 90 DFDQFS-------RDECIGVVELPLAEVDLSEKLDLWRKIQ 123 (124)
T ss_pred ECCCCC-------CCceeEEEEEecccccCCCCcceEEECc
Confidence 999876 7999999999999998777788999985
No 76
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=99.68 E-value=3.7e-16 Score=153.64 Aligned_cols=121 Identities=22% Similarity=0.348 Sum_probs=101.4
Q ss_pred ccEEEEEEEEecCCCCCC------------------------------CCCCCCcEEEEEECCeE-EEeeCcCCCCCCee
Q 042999 15 VRKLVVEVVDARDLLPKD------------------------------GQGSSSPYVIADFDGQR-KRTSTKFRDLNPVW 63 (1006)
Q Consensus 15 ~~~L~V~v~~a~~L~~~~------------------------------~~g~~dPyv~v~~~~~~-~kT~~~~~t~nP~w 63 (1006)
.|.|.|+|.+|++|+++| ..|++||||++.+++.+ .+|++++++.||+|
T Consensus 6 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~~rT~v~~~~~nP~W 85 (158)
T cd04015 6 HGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARVARTRVIENSENPVW 85 (158)
T ss_pred eeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEeeEEEEeCCCCCCcc
Confidence 378999999999999987 35779999999999755 69999999999999
Q ss_pred eeEEEEEeeCCCCCCCceEEEEEEeCCCCCCCCCCCCceeEEEEEeCeeeeeeCCceeEEEEceecCCc-eeeeEEEEEE
Q 042999 64 NEPLEFIVSDPKNMDCEELEIEVYNDKRYCNGSGRKNHFLGRVKLCGSQFARRGDEGLVYFPLEKKSVF-SWIRGEIGLR 142 (1006)
Q Consensus 64 ne~f~f~~~~~~~~~~~~L~i~V~d~d~~~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~~~-~~~~G~i~l~ 142 (1006)
||+|.|.+... .+.|.|.|||++.+ ++++||++.++++++. .+.....|++|.+.... .+..|+|+++
T Consensus 86 nE~F~~~~~~~----~~~l~~~V~d~d~~------~~~~IG~~~i~l~~l~-~g~~~~~w~~L~~~~~~~~~~~~~l~v~ 154 (158)
T cd04015 86 NESFHIYCAHY----ASHVEFTVKDNDVV------GAQLIGRAYIPVEDLL-SGEPVEGWLPILDSNGKPPKPGAKIRVS 154 (158)
T ss_pred ceEEEEEccCC----CCEEEEEEEeCCCc------CCcEEEEEEEEhHHcc-CCCCcceEEECcCCCCCCCCCCCEEEEE
Confidence 99999998764 45799999999988 5689999999999964 56667799999864322 2346899999
Q ss_pred EEEE
Q 042999 143 IYYY 146 (1006)
Q Consensus 143 ~~~~ 146 (1006)
+.|.
T Consensus 155 ~~f~ 158 (158)
T cd04015 155 LQFT 158 (158)
T ss_pred EEEC
Confidence 9884
No 77
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.68 E-value=6.8e-16 Score=147.05 Aligned_cols=115 Identities=21% Similarity=0.315 Sum_probs=100.6
Q ss_pred EeeccCCccCccCCCCCCCCCeEEEEEECCEEEEeecccCCCCCeeccEEEEEEeCC---CcEEEEEEEECCCCCcCCCC
Q 042999 625 ILGARGLLPMKTKNGGKGSTDAYCVAKYGKKWVRTRTITDCFDPRWNEQYTWQVYDP---CTVLTVGVFDNWRMFADASE 701 (1006)
Q Consensus 625 v~~a~~L~~~~~~d~~~g~sdpyv~v~~~~~~~rT~~~~~~~nP~wne~~~~~v~~~---~~~l~i~v~d~~~~~~~~~~ 701 (1006)
|++|++|++ . .|++||||++.+++...||++++++.||+|||.|.|++.++ ...|.|+|||++..+
T Consensus 2 vi~a~~L~~-----~-~g~~Dpyv~v~~~~~~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~----- 70 (127)
T cd08373 2 VVSLKNLPG-----L-KGKGDRIAKVTFRGVKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVG----- 70 (127)
T ss_pred eEEeeCCcc-----c-CCCCCCEEEEEECCEeeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCC-----
Confidence 689999976 3 77899999999999999999999999999999999999763 578999999999876
Q ss_pred CCCCceeEEEEEEcccccCCceEeeEEEeeeeccCCcccccEEEEEEEEecCC
Q 042999 702 ERPDYRIGKIRIRVSTLENNKVYTTSYPLLVLLRTGLKKMGEIELAVRFVCPS 754 (1006)
Q Consensus 702 ~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~l~l~~~~~~~~ 754 (1006)
+|++||.+.++|.++..+.....|++|.+.... ...|+|++++.|.+.+
T Consensus 71 --~d~~iG~~~~~l~~l~~~~~~~~~~~L~~~~~~--~~~~~l~l~~~~~~~~ 119 (127)
T cd08373 71 --RNRLIGSATVSLQDLVSEGLLEVTEPLLDSNGR--PTGATISLEVSYQPPD 119 (127)
T ss_pred --CCceEEEEEEEhhHcccCCceEEEEeCcCCCCC--cccEEEEEEEEEeCCC
Confidence 789999999999999988878899999764332 2349999999998764
No 78
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=99.67 E-value=4.2e-16 Score=147.25 Aligned_cols=117 Identities=23% Similarity=0.314 Sum_probs=95.5
Q ss_pred EEEEEeeccCCccCccCCCCCCCCCeEEEEEEC-CEEEEeecccCCCCCeeccEEEEEEeCCCcEEEEEEEECCCCCcCC
Q 042999 621 LELGILGARGLLPMKTKNGGKGSTDAYCVAKYG-KKWVRTRTITDCFDPRWNEQYTWQVYDPCTVLTVGVFDNWRMFADA 699 (1006)
Q Consensus 621 L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~-~~~~rT~~~~~~~nP~wne~~~~~v~~~~~~l~i~v~d~~~~~~~~ 699 (1006)
|+|+|++|++|++++ . .|.+||||++.++ .+.+||+++++++||.|||.|.|++.. ...|.|+|||++.++
T Consensus 2 l~v~v~~A~~L~~~~---~-~~~~dpyv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~-~~~l~i~V~d~~~~~--- 73 (123)
T cd08382 2 VRLTVLCADGLAKRD---L-FRLPDPFAVITVDGGQTHSTDVAKKTLDPKWNEHFDLTVGP-SSIITIQVFDQKKFK--- 73 (123)
T ss_pred eEEEEEEecCCCccC---C-CCCCCcEEEEEECCccceEccEEcCCCCCcccceEEEEeCC-CCEEEEEEEECCCCC---
Confidence 789999999998754 4 7899999999996 778899999999999999999999965 779999999999875
Q ss_pred CCCC-CCceeEEEEEEcccccCCce-EeeEEEeeeeccCCc-ccccEEEEEE
Q 042999 700 SEER-PDYRIGKIRIRVSTLENNKV-YTTSYPLLVLLRTGL-KKMGEIELAV 748 (1006)
Q Consensus 700 ~~~~-~d~~lG~~~i~l~~l~~~~~-~~~~~~L~~~~~~g~-~~~G~l~l~~ 748 (1006)
. .|++||++.+++.++..... ...||+|........ ...|+|.+++
T Consensus 74 ---~~~d~~lG~~~i~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~G~v~~~~ 122 (123)
T cd08382 74 ---KKDQGFLGCVRIRANAVLPLKDTGYQRLDLRKLKKSDNLSVRGKIVVSL 122 (123)
T ss_pred ---CCCCceEeEEEEEHHHccccCCCccceeEeecCCCCCCceEeeEEEEEe
Confidence 1 26899999999999875432 257999977554221 1248888765
No 79
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=99.67 E-value=3.9e-16 Score=143.08 Aligned_cols=99 Identities=21% Similarity=0.328 Sum_probs=87.5
Q ss_pred EEEEEEeeccCCccCccCCCCCCCCCeEEEEEECCEEEEeecccCCCCCeeccEEEEEEeCC-CcEEEEEEEECCCCCcC
Q 042999 620 ILELGILGARGLLPMKTKNGGKGSTDAYCVAKYGKKWVRTRTITDCFDPRWNEQYTWQVYDP-CTVLTVGVFDNWRMFAD 698 (1006)
Q Consensus 620 ~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~~~~~rT~~~~~~~nP~wne~~~~~v~~~-~~~l~i~v~d~~~~~~~ 698 (1006)
.|.|+|++|++|++.+ . .|.+||||+++++++..||+++.++.||+|||.|.|.+.++ .+.|.|+|||++.
T Consensus 1 ~L~V~v~~A~~L~~~~---~-~~~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~v~v~d~~~---- 72 (105)
T cd04050 1 LLFVYLDSAKNLPLAK---S-TKEPSPYVELTVGKTTQKSKVKERTNNPVWEEGFTFLVRNPENQELEIEVKDDKT---- 72 (105)
T ss_pred CEEEEEeeecCCCCcc---c-CCCCCcEEEEEECCEEEeCccccCCCCCcccceEEEEeCCCCCCEEEEEEEECCC----
Confidence 3789999999998854 4 78999999999999999999999999999999999999985 5689999999863
Q ss_pred CCCCCCCceeEEEEEEcccccCC--ceEeeEEEeee
Q 042999 699 ASEERPDYRIGKIRIRVSTLENN--KVYTTSYPLLV 732 (1006)
Q Consensus 699 ~~~~~~d~~lG~~~i~l~~l~~~--~~~~~~~~L~~ 732 (1006)
|++||++.|+|.++..+ ...+.||+|.+
T Consensus 73 ------~~~iG~~~i~l~~l~~~~~~~~~~w~~L~~ 102 (105)
T cd04050 73 ------GKSLGSLTLPLSELLKEPDLTLDQPFPLDN 102 (105)
T ss_pred ------CCccEEEEEEHHHhhccccceeeeeEecCC
Confidence 67999999999998754 35789999964
No 80
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=99.67 E-value=7.3e-16 Score=146.26 Aligned_cols=104 Identities=26% Similarity=0.318 Sum_probs=90.6
Q ss_pred CcEEEEEEEeeccCCccCccCCCCCCCCCeEEEEEEC---CEEEEeecccCCCCCeeccEEEEEEeC---CCcEEEEEEE
Q 042999 617 PVGILELGILGARGLLPMKTKNGGKGSTDAYCVAKYG---KKWVRTRTITDCFDPRWNEQYTWQVYD---PCTVLTVGVF 690 (1006)
Q Consensus 617 ~~g~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~---~~~~rT~~~~~~~nP~wne~~~~~v~~---~~~~l~i~v~ 690 (1006)
..|.|.|+|++|+||++++ . .|.+||||++.+. .+..||+++++++||.|||.|.|.+.. ....|.|+||
T Consensus 14 ~~~~L~V~v~~a~~L~~~d---~-~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~V~ 89 (124)
T cd08385 14 QSNQLTVGIIQAADLPAMD---M-GGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYSELGNKTLVFSVY 89 (124)
T ss_pred CCCEEEEEEEEeeCCCCcc---C-CCCCCCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEeCCHHHhCCCEEEEEEE
Confidence 3478999999999998854 4 7789999999984 357799999999999999999999865 2468999999
Q ss_pred ECCCCCcCCCCCCCCceeEEEEEEcccccCCceEeeEEEee
Q 042999 691 DNWRMFADASEERPDYRIGKIRIRVSTLENNKVYTTSYPLL 731 (1006)
Q Consensus 691 d~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 731 (1006)
|+|.++ +|++||++.++|+++..+...+.||+|.
T Consensus 90 d~d~~~-------~~~~lG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08385 90 DFDRFS-------KHDLIGEVRVPLLTVDLGHVTEEWRDLE 123 (124)
T ss_pred eCCCCC-------CCceeEEEEEecCcccCCCCcceEEEcc
Confidence 999887 7899999999999998877778999984
No 81
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.67 E-value=9.5e-16 Score=147.40 Aligned_cols=125 Identities=24% Similarity=0.335 Sum_probs=100.9
Q ss_pred cEEEEEEEEecCCCCCCCCCCCCcEEEEEECCeEEEeeCcCCCCCCeeeeEEEEEeeCCC----CC--CCceEEEEEEeC
Q 042999 16 RKLVVEVVDARDLLPKDGQGSSSPYVIADFDGQRKRTSTKFRDLNPVWNEPLEFIVSDPK----NM--DCEELEIEVYND 89 (1006)
Q Consensus 16 ~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~----~~--~~~~L~i~V~d~ 89 (1006)
+.|+|+|++|++|+.++..|.+||||++.+++++++|+++++++||.|||+|.|.+.... .. ....|.|+|||+
T Consensus 1 ~~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d~ 80 (135)
T cd04017 1 FQLRAYIYQARDLLAADKSGLSDPFARVSFLNQSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFDQ 80 (135)
T ss_pred CEEEEEEEEeecCcCCCCCCCCCCEEEEEECCeeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEeC
Confidence 368999999999999999999999999999999999999999999999999999753211 00 124699999999
Q ss_pred CCCCCCCCCCCceeEEEEE-eCeeeee--eCCceeEEEEceecCCceeeeEEEEEEEEEEec
Q 042999 90 KRYCNGSGRKNHFLGRVKL-CGSQFAR--RGDEGLVYFPLEKKSVFSWIRGEIGLRIYYYDE 148 (1006)
Q Consensus 90 d~~~~~~~~~d~~lG~~~v-~l~~l~~--~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~~ 148 (1006)
+.. ++|++||++.+ ++..+.. .+....+|++|.+.+ ...|+|.+.+++.+.
T Consensus 81 d~~-----~~d~~iG~~~i~~~~~~~~~~~~~~~~~W~~L~~~~---~~~Geil~~~~~~~~ 134 (135)
T cd04017 81 DSV-----GKDEFLGRSVAKPLVKLDLEEDFPPKLQWFPIYKGG---QSAGELLAAFELIEV 134 (135)
T ss_pred cCC-----CCCccceEEEeeeeeecccCCCCCCCceEEEeecCC---CchhheeEEeEEEEe
Confidence 998 78999999997 4444322 124456899998654 358999999998864
No 82
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=99.67 E-value=5e-16 Score=145.10 Aligned_cols=101 Identities=24% Similarity=0.348 Sum_probs=86.6
Q ss_pred EEEEEEEeeccCCccCccCCCCCCCCCeEEEEEECC-----EEEEeecccCCCCCeeccEEEEEEeC--CCcEEEEEEEE
Q 042999 619 GILELGILGARGLLPMKTKNGGKGSTDAYCVAKYGK-----KWVRTRTITDCFDPRWNEQYTWQVYD--PCTVLTVGVFD 691 (1006)
Q Consensus 619 g~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~~-----~~~rT~~~~~~~nP~wne~~~~~v~~--~~~~l~i~v~d 691 (1006)
|.|.|+|++|+||++++ .|.+||||++.+.+ ...||+++.+++||.|||+|.|++.. ....|.|+|||
T Consensus 12 ~~L~V~Vi~ar~L~~~~-----~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~~l~v~V~~ 86 (119)
T cd08685 12 RKLTLHVLEAKGLRSTN-----SGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQKRLLVTVWN 86 (119)
T ss_pred CEEEEEEEEEECCCCCC-----CCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHhCCEEEEEEEC
Confidence 68999999999998864 56899999999853 36689999999999999999999865 33578999999
Q ss_pred CCCCCcCCCCCCCCceeEEEEEEcccccCCceEeeEEEe
Q 042999 692 NWRMFADASEERPDYRIGKIRIRVSTLENNKVYTTSYPL 730 (1006)
Q Consensus 692 ~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L 730 (1006)
.+... ..+++||.+.|+|.++..+...+.||.|
T Consensus 87 ~~~~~------~~~~~lG~~~i~l~~~~~~~~~~~Wy~l 119 (119)
T cd08685 87 KLSKS------RDSGLLGCMSFGVKSIVNQKEISGWYYL 119 (119)
T ss_pred CCCCc------CCCEEEEEEEecHHHhccCccccceEeC
Confidence 98754 1478999999999999888778899986
No 83
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=99.67 E-value=9.2e-16 Score=145.08 Aligned_cols=104 Identities=19% Similarity=0.213 Sum_probs=87.5
Q ss_pred CcEEEEEEEeeccCCccCccCCCCCCCCCeEEEEEEC-----CEEEEeecccCCCCCeeccEEEEEEeC---CCcEEEEE
Q 042999 617 PVGILELGILGARGLLPMKTKNGGKGSTDAYCVAKYG-----KKWVRTRTITDCFDPRWNEQYTWQVYD---PCTVLTVG 688 (1006)
Q Consensus 617 ~~g~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~-----~~~~rT~~~~~~~nP~wne~~~~~v~~---~~~~l~i~ 688 (1006)
..+.|.|+|++|+||++++. . .|.+||||++.+. ..+.||+++++++||+|||+|.|++.. ....|.|.
T Consensus 13 ~~~~L~V~V~~a~nL~~~d~--~-~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~~~l~~~~L~v~ 89 (128)
T cd08392 13 RTSCLEITIKACRNLAYGDE--K-KKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVVEADLLSSRQLQVS 89 (128)
T ss_pred CCCEEEEEEEecCCCCccCC--C-CCCCCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEEcCHHHhCCcEEEEE
Confidence 34699999999999998642 1 3889999999984 236799999999999999999999865 35689999
Q ss_pred EEECCCCCcCCCCCCCCceeEEEEEEcccccCC---ceEeeEEEe
Q 042999 689 VFDNWRMFADASEERPDYRIGKIRIRVSTLENN---KVYTTSYPL 730 (1006)
Q Consensus 689 v~d~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~---~~~~~~~~L 730 (1006)
|||.+.++ ++++||.+.|+|.++... .....||+|
T Consensus 90 V~~~~~~~-------~~~~lG~~~i~L~~~~~~~~~~~~~~W~~l 127 (128)
T cd08392 90 VWHSRTLK-------RRVFLGEVLIPLADWDFEDTDSQRFLWYPL 127 (128)
T ss_pred EEeCCCCc-------CcceEEEEEEEcCCcccCCCCccccceEEC
Confidence 99999876 789999999999998643 345799998
No 84
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=99.66 E-value=3.2e-16 Score=148.29 Aligned_cols=106 Identities=29% Similarity=0.524 Sum_probs=90.6
Q ss_pred ccEEEEEEEEecCCCCCCCC-CCCCcEEEEEEC-----CeEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEe
Q 042999 15 VRKLVVEVVDARDLLPKDGQ-GSSSPYVIADFD-----GQRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYN 88 (1006)
Q Consensus 15 ~~~L~V~v~~a~~L~~~~~~-g~~dPyv~v~~~-----~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d 88 (1006)
.+.|.|+|++|+||++++.. |.+||||++++. ..+++|+++++++||+|||+|.|.+.... +....|.|+|||
T Consensus 14 ~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~~-l~~~~L~~~V~d 92 (125)
T cd08393 14 LRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVEREE-LPTRVLNLSVWH 92 (125)
T ss_pred CCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEECCHHH-hCCCEEEEEEEe
Confidence 46899999999999999975 899999999994 24589999999999999999999986532 235689999999
Q ss_pred CCCCCCCCCCCCceeEEEEEeCeeeeeeCCceeEEEEce
Q 042999 89 DKRYCNGSGRKNHFLGRVKLCGSQFARRGDEGLVYFPLE 127 (1006)
Q Consensus 89 ~d~~~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~ 127 (1006)
++.+ +++++||++.++|.++ ...+....||+|+
T Consensus 93 ~~~~-----~~~~~iG~~~i~L~~~-~~~~~~~~W~~L~ 125 (125)
T cd08393 93 RDSL-----GRNSFLGEVEVDLGSW-DWSNTQPTWYPLQ 125 (125)
T ss_pred CCCC-----CCCcEeEEEEEecCcc-ccCCCCcceEECc
Confidence 9998 7899999999999996 5555556899884
No 85
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.66 E-value=7.1e-16 Score=146.59 Aligned_cols=120 Identities=26% Similarity=0.381 Sum_probs=99.5
Q ss_pred cEEEEEEEEecCCCCCC-CCCCCCcEEEEEECC--eEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEeCCCC
Q 042999 16 RKLVVEVVDARDLLPKD-GQGSSSPYVIADFDG--QRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYNDKRY 92 (1006)
Q Consensus 16 ~~L~V~v~~a~~L~~~~-~~g~~dPyv~v~~~~--~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~d~~ 92 (1006)
|.|.|+|++|++|+..+ ..+.+||||++.+++ ..++|+++.++.||.|||.|.|.+... ...|.|+|||++..
T Consensus 2 g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~~~~~kT~~~~~~~~P~Wne~~~~~v~~~----~~~l~~~v~d~~~~ 77 (124)
T cd04044 2 GVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILVNSL----TEPLNLTVYDFNDK 77 (124)
T ss_pred eEEEEEEEcccCCCcccccCCCCCCeEEEEECCCCcceEeeeecCCCCCcceEEEEEEeCCC----CCEEEEEEEecCCC
Confidence 68999999999998655 356799999999987 779999999999999999999998742 56899999999988
Q ss_pred CCCCCCCCceeEEEEEeCeeeeeeCCceeEEEEceecCCceeeeEEEEEEEEEEe
Q 042999 93 CNGSGRKNHFLGRVKLCGSQFARRGDEGLVYFPLEKKSVFSWIRGEIGLRIYYYD 147 (1006)
Q Consensus 93 ~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~ 147 (1006)
++|++||.+.+++.++...+.....|..|... ++..|+|+++++|.|
T Consensus 78 -----~~d~~iG~~~~~l~~l~~~~~~~~~~~~~~~~---~k~~G~i~~~l~~~p 124 (124)
T cd04044 78 -----RKDKLIGTAEFDLSSLLQNPEQENLTKNLLRN---GKPVGELNYDLRFFP 124 (124)
T ss_pred -----CCCceeEEEEEEHHHhccCccccCcchhhhcC---CccceEEEEEEEeCC
Confidence 78999999999999976544433345555432 245899999999975
No 86
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=99.66 E-value=3e-16 Score=145.35 Aligned_cols=99 Identities=26% Similarity=0.371 Sum_probs=86.4
Q ss_pred EEEEEEEeeccCCccCccCCCCC-CCCCeEEEEEEC---CEEEEeecccCCCCCeeccEEEEEEeCC----CcEEEEEEE
Q 042999 619 GILELGILGARGLLPMKTKNGGK-GSTDAYCVAKYG---KKWVRTRTITDCFDPRWNEQYTWQVYDP----CTVLTVGVF 690 (1006)
Q Consensus 619 g~L~v~v~~a~~L~~~~~~d~~~-g~sdpyv~v~~~---~~~~rT~~~~~~~nP~wne~~~~~v~~~----~~~l~i~v~ 690 (1006)
|.|+|+|++|+||++++ . . |.+||||++.+. +...+|+++++++||+|||.|.|.+... ...|.|+||
T Consensus 1 G~L~V~v~~a~~L~~~d---~-~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~ 76 (111)
T cd04041 1 GVLVVTIHRATDLPKAD---F-GTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLW 76 (111)
T ss_pred CEEEEEEEEeeCCCccc---C-CCCCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEE
Confidence 78999999999999865 3 5 789999999983 4578999999999999999999988653 568999999
Q ss_pred ECCCCCcCCCCCCCCceeEEEEEEcccccCCceEeeEEEee
Q 042999 691 DNWRMFADASEERPDYRIGKIRIRVSTLENNKVYTTSYPLL 731 (1006)
Q Consensus 691 d~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 731 (1006)
|+|.++ +|++||++.+++.++... ..|++++
T Consensus 77 d~d~~~-------~dd~lG~~~i~l~~l~~~---~~~~~~~ 107 (111)
T cd04041 77 DSDRFT-------ADDRLGRVEIDLKELIED---RNWMGRR 107 (111)
T ss_pred eCCCCC-------CCCcceEEEEEHHHHhcC---CCCCccc
Confidence 999887 799999999999999733 6888884
No 87
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.66 E-value=7.2e-16 Score=147.69 Aligned_cols=106 Identities=25% Similarity=0.370 Sum_probs=90.4
Q ss_pred ccEEEEEEEEecCCCCCC-CCCCCCcEEEEEEC--C---eEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEE-
Q 042999 15 VRKLVVEVVDARDLLPKD-GQGSSSPYVIADFD--G---QRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVY- 87 (1006)
Q Consensus 15 ~~~L~V~v~~a~~L~~~~-~~g~~dPyv~v~~~--~---~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~- 87 (1006)
.+.|.|+|++|+||.+++ ..|.+||||++++. + .++||+++++++||+|||+|.|.+.. .+..|.|+||
T Consensus 28 ~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~l----~~~~L~v~V~~ 103 (146)
T cd04028 28 KGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDVSP----TGKTLQVIVWG 103 (146)
T ss_pred CCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEEcC----CCCEEEEEEEe
Confidence 368999999999998874 56889999999994 2 36899999999999999999999983 2678999999
Q ss_pred eCCCCCCCCCCCCceeEEEEEeCeeeeeeCCceeEEEEceecC
Q 042999 88 NDKRYCNGSGRKNHFLGRVKLCGSQFARRGDEGLVYFPLEKKS 130 (1006)
Q Consensus 88 d~d~~~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~ 130 (1006)
|++.+ +++++||++.|+|+++ ..+.....||+|.+..
T Consensus 104 d~~~~-----~~~~~iG~~~i~L~~l-~~~~~~~~Wy~L~~~~ 140 (146)
T cd04028 104 DYGRM-----DKKVFMGVAQILLDDL-DLSNLVIGWYKLFPTS 140 (146)
T ss_pred CCCCC-----CCCceEEEEEEEcccc-cCCCCceeEEecCCcc
Confidence 57777 7899999999999995 5555667899998654
No 88
>PF04842 DUF639: Plant protein of unknown function (DUF639); InterPro: IPR006927 The sequences in this family are plant proteins of unknown function.
Probab=99.66 E-value=7.3e-16 Score=174.48 Aligned_cols=165 Identities=18% Similarity=0.235 Sum_probs=140.7
Q ss_pred cchHhhHHHHHHHHHHHHHHHHHHHHhhccccccCcchhhHHHHHHHHHhhcCcc--hhHHHHHHHHHHhhhcccc-CCC
Q 042999 820 WSMRKSKANWFRIVAVLAWAIGLAKWLHNIRRWKNPVTTVLVHVLYLVLVWYPDL--IVPTGFLYVVLIGVWYYRF-RPK 896 (1006)
Q Consensus 820 fs~~~~~~n~~rl~~~l~~~~~~~~~~~~~~~W~~p~~t~~~~~~~~~~~~~p~l--~~~~~~l~~~~~~~~~~~~-~~~ 896 (1006)
.+...+-+|+.-|++++.|+..+..+++.+.+||+|.+|+.+++++.+++|..|+ ++|.++++++++|+|.+.. +.+
T Consensus 480 vkveGI~tNvav~kELL~Pl~~i~~~~~~l~~We~P~kt~~Fl~~~~~iI~r~wl~Y~~p~~Ll~~a~~Ml~~r~~~~~g 559 (683)
T PF04842_consen 480 VKVEGIDTNVAVMKELLFPLIEIAKWLQKLASWEEPLKTLVFLALFLYIIYRGWLGYIFPAFLLFSAVFMLWLRYQGRLG 559 (683)
T ss_pred HhhcCCccHHHHHHhccccHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC
Confidence 3445566899999999999999999999999999999999999999999999888 6799999999999997765 322
Q ss_pred CCCCCCCccccCCCCCCCCCCccccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhHHhHhhhccccCchhHHHHH
Q 042999 897 IPSGMDTRLSQAETVDPDELDEEFDTIPSSKPPEIIRMRYDRLRMLAARVQTVLGDFATQGERVQALVSWRDPRATKLFI 976 (1006)
Q Consensus 897 ~~~~~~~~~s~~~~~~~~~~~ee~~~~~~~~~~~~~~~~~~~l~~~~~~vQ~~l~~~a~~~e~i~~~~~w~~p~~t~~~~ 976 (1006)
..-+++....+....+. |++-++|+.+.++++.+++++.++.|+|+++.|..|.+|..++
T Consensus 560 ------------------~~~~~v~V~~pP~~nTv--EqilalQ~Ais~~E~~iQ~~NI~LLKiRsllls~~PqaT~~Va 619 (683)
T PF04842_consen 560 ------------------KSFGEVTVRDPPPKNTV--EQILALQEAISQLEEYIQAANIVLLKIRSLLLSKFPQATNKVA 619 (683)
T ss_pred ------------------CccceEEecCCCCccHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHH
Confidence 11122322222223333 9999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHhhhhcc
Q 042999 977 GVCTVITLVLYVVPPKMVAVALGFYYLR 1004 (1006)
Q Consensus 977 ~~l~~~~~~l~~iP~r~i~l~~~~~~~~ 1004 (1006)
++++++|++++++|+||++++..++.|.
T Consensus 620 ~~Ll~~A~~LavvP~kyil~~v~l~~FT 647 (683)
T PF04842_consen 620 LALLGLAAVLAVVPFKYILLFVFLEVFT 647 (683)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999998877653
No 89
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.66 E-value=1.2e-15 Score=145.01 Aligned_cols=104 Identities=22% Similarity=0.298 Sum_probs=90.2
Q ss_pred CcEEEEEEEeeccCCccCccCCCCCCCCCeEEEEEE---CCEEEEeecccCCCCCeeccEEEEEEeC----CCcEEEEEE
Q 042999 617 PVGILELGILGARGLLPMKTKNGGKGSTDAYCVAKY---GKKWVRTRTITDCFDPRWNEQYTWQVYD----PCTVLTVGV 689 (1006)
Q Consensus 617 ~~g~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~---~~~~~rT~~~~~~~nP~wne~~~~~v~~----~~~~l~i~v 689 (1006)
..+.|.|+|++|+||+.++ . .|.+||||++.+ ++...||+++++++||.|||.|.|.+.. ....|.++|
T Consensus 14 ~~~~L~v~v~~a~~L~~~d---~-~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l~~~~l~~~v 89 (125)
T cd08386 14 QESTLTLKILKAVELPAKD---F-SGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKLQQRVLYLQV 89 (125)
T ss_pred CCCEEEEEEEEecCCCCcc---C-CCCCCceEEEEECCCCCcceeeeeecCCCCCccceeEEEcccCHHHhCCCEEEEEE
Confidence 3468999999999998854 4 778999999998 3567899999999999999999998543 235799999
Q ss_pred EECCCCCcCCCCCCCCceeEEEEEEcccccCCceEeeEEEee
Q 042999 690 FDNWRMFADASEERPDYRIGKIRIRVSTLENNKVYTTSYPLL 731 (1006)
Q Consensus 690 ~d~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 731 (1006)
||++.++ ++++||.+.|++.++..+...+.||+|.
T Consensus 90 ~d~d~~~-------~~~~iG~~~i~l~~l~~~~~~~~W~~l~ 124 (125)
T cd08386 90 LDYDRFS-------RNDPIGEVSLPLNKVDLTEEQTFWKDLK 124 (125)
T ss_pred EeCCCCc-------CCcEeeEEEEecccccCCCCcceEEecC
Confidence 9999877 7899999999999999888788999984
No 90
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=99.66 E-value=1.2e-15 Score=144.90 Aligned_cols=104 Identities=20% Similarity=0.220 Sum_probs=86.8
Q ss_pred cEEEEEEEeeccCCccCccCCCCCCCCCeEEEEEEC---CEEEEeecccCCCCCeeccEEEEEEeC----CCcEEEEEEE
Q 042999 618 VGILELGILGARGLLPMKTKNGGKGSTDAYCVAKYG---KKWVRTRTITDCFDPRWNEQYTWQVYD----PCTVLTVGVF 690 (1006)
Q Consensus 618 ~g~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~---~~~~rT~~~~~~~nP~wne~~~~~v~~----~~~~l~i~v~ 690 (1006)
.+.|+|+|++|+||++++ ...|.+||||++.+. .+..||+++++++||+|||+|.|.... ....|.|.||
T Consensus 15 ~~~L~V~Vi~a~~L~~~~---~~~~~~DpyV~v~l~~~~~~~~kT~v~~~t~nP~wnE~F~f~~~~~~~~~~~~L~~~V~ 91 (128)
T cd08388 15 KKALLVNIIECRDLPAMD---EQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIPYNQLQDLSLHFAVL 91 (128)
T ss_pred CCEEEEEEEEeECCCCCC---CCCCCcCCEEEEEEeCCcCceeeccEEcCCCCCceeeEEEEcccCHHHhCCCEEEEEEE
Confidence 468999999999999864 313789999999985 456799999999999999999995332 2347999999
Q ss_pred ECCCCCcCCCCCCCCceeEEEEEEcccccCC--ceEeeEEEee
Q 042999 691 DNWRMFADASEERPDYRIGKIRIRVSTLENN--KVYTTSYPLL 731 (1006)
Q Consensus 691 d~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~--~~~~~~~~L~ 731 (1006)
|+|.++ +|++||++.|+|+++... ++...|.+|.
T Consensus 92 d~d~~~-------~d~~lG~~~i~L~~l~~~~~~~~~~~~~~~ 127 (128)
T cd08388 92 SFDRYS-------RDDVIGEVVCPLAGADLLNEGELLVSREIQ 127 (128)
T ss_pred EcCCCC-------CCceeEEEEEeccccCCCCCceEEEEEecc
Confidence 999876 899999999999998654 6778999884
No 91
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.66 E-value=1e-15 Score=145.62 Aligned_cols=103 Identities=22% Similarity=0.288 Sum_probs=86.3
Q ss_pred CcEEEEEEEeeccCCccCccCCCCCCCCCeEEEEEECC-----EEEEeecccCCCCCeeccEEEEEEeC----CCcEEEE
Q 042999 617 PVGILELGILGARGLLPMKTKNGGKGSTDAYCVAKYGK-----KWVRTRTITDCFDPRWNEQYTWQVYD----PCTVLTV 687 (1006)
Q Consensus 617 ~~g~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~~-----~~~rT~~~~~~~nP~wne~~~~~v~~----~~~~l~i 687 (1006)
..|.|.|+|++|+||++++ . .+.+||||++.+++ ...||+++++++||+|||+|.|++.. ....|.|
T Consensus 14 ~~~~L~V~vi~a~~L~~~~---~-~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~l~~ 89 (125)
T cd04031 14 VTSQLIVTVLQARDLPPRD---D-GSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRETLKERTLEV 89 (125)
T ss_pred CCCEEEEEEEEecCCCCcC---C-CCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHHHhCCCEEEE
Confidence 3478999999999998864 4 77899999999864 57799999999999999999999755 3568999
Q ss_pred EEEECCCCCcCCCCCCCCceeEEEEEEcccccCCceEeeEEEee
Q 042999 688 GVFDNWRMFADASEERPDYRIGKIRIRVSTLENNKVYTTSYPLL 731 (1006)
Q Consensus 688 ~v~d~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 731 (1006)
+|||++..+ .|++||++.++|.+.... ....||+|.
T Consensus 90 ~V~d~~~~~-------~~~~iG~~~i~l~~~~~~-~~~~W~~L~ 125 (125)
T cd04031 90 TVWDYDRDG-------ENDFLGEVVIDLADALLD-DEPHWYPLQ 125 (125)
T ss_pred EEEeCCCCC-------CCcEeeEEEEeccccccc-CCcceEECc
Confidence 999999876 789999999999983322 226899983
No 92
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.65 E-value=1.6e-15 Score=145.77 Aligned_cols=118 Identities=19% Similarity=0.292 Sum_probs=96.7
Q ss_pred EEEEEEeeccCCccCccCCCCCCCCCeEEEEEECCEEEEeecccCCCCCeeccEEEEEEeCC----------CcEEEEEE
Q 042999 620 ILELGILGARGLLPMKTKNGGKGSTDAYCVAKYGKKWVRTRTITDCFDPRWNEQYTWQVYDP----------CTVLTVGV 689 (1006)
Q Consensus 620 ~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~~~~~rT~~~~~~~nP~wne~~~~~v~~~----------~~~l~i~v 689 (1006)
.|+|+|++|++|+++| . .|.+||||++.+++...||+++++|+||.|||.|.|++... ...|.|+|
T Consensus 2 ~l~v~V~~a~~L~~~d---~-~g~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V 77 (135)
T cd04017 2 QLRAYIYQARDLLAAD---K-SGLSDPFARVSFLNQSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVEL 77 (135)
T ss_pred EEEEEEEEeecCcCCC---C-CCCCCCEEEEEECCeeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEE
Confidence 5899999999998865 4 78999999999999999999999999999999999986431 24699999
Q ss_pred EECCCCCcCCCCCCCCceeEEEEE-EcccccC---CceEeeEEEeeeeccCCcccccEEEEEEEEec
Q 042999 690 FDNWRMFADASEERPDYRIGKIRI-RVSTLEN---NKVYTTSYPLLVLLRTGLKKMGEIELAVRFVC 752 (1006)
Q Consensus 690 ~d~~~~~~~~~~~~~d~~lG~~~i-~l~~l~~---~~~~~~~~~L~~~~~~g~~~~G~l~l~~~~~~ 752 (1006)
||+|..+ +|++||++.+ ++..+.. +.....||+|... | ...|+|.+++.+..
T Consensus 78 ~d~d~~~-------~d~~iG~~~i~~~~~~~~~~~~~~~~~W~~L~~~---~-~~~Geil~~~~~~~ 133 (135)
T cd04017 78 FDQDSVG-------KDEFLGRSVAKPLVKLDLEEDFPPKLQWFPIYKG---G-QSAGELLAAFELIE 133 (135)
T ss_pred EeCcCCC-------CCccceEEEeeeeeecccCCCCCCCceEEEeecC---C-CchhheeEEeEEEE
Confidence 9999876 7899999997 4444442 3456799999632 2 24599999998863
No 93
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=99.65 E-value=5.8e-16 Score=146.31 Aligned_cols=107 Identities=28% Similarity=0.483 Sum_probs=90.6
Q ss_pred cccEEEEEEEEecCCCCCCC-CCCCCcEEEEEEC-----CeEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEE
Q 042999 14 TVRKLVVEVVDARDLLPKDG-QGSSSPYVIADFD-----GQRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVY 87 (1006)
Q Consensus 14 ~~~~L~V~v~~a~~L~~~~~-~g~~dPyv~v~~~-----~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~ 87 (1006)
..+.|.|+|++|+||+.++. .|.+||||++++. ..++||+++++++||+|||+|.|.+.... +....|.|+||
T Consensus 13 ~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~-l~~~~L~~~V~ 91 (125)
T cd04029 13 KTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHSQ-LETRTLQLSVW 91 (125)
T ss_pred CCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCHHH-hCCCEEEEEEE
Confidence 46789999999999998875 4789999999994 23589999999999999999999986532 23568999999
Q ss_pred eCCCCCCCCCCCCceeEEEEEeCeeeeeeCCceeEEEEce
Q 042999 88 NDKRYCNGSGRKNHFLGRVKLCGSQFARRGDEGLVYFPLE 127 (1006)
Q Consensus 88 d~d~~~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~ 127 (1006)
|++.. +++++||++.+++.++ ........|++|+
T Consensus 92 d~~~~-----~~~~~lG~~~i~l~~~-~~~~~~~~w~~l~ 125 (125)
T cd04029 92 HYDRF-----GRNTFLGEVEIPLDSW-NFDSQHEECLPLH 125 (125)
T ss_pred ECCCC-----CCCcEEEEEEEeCCcc-cccCCcccEEECc
Confidence 99998 7999999999999995 5555667899984
No 94
>PLN03008 Phospholipase D delta
Probab=99.65 E-value=7.5e-16 Score=179.48 Aligned_cols=106 Identities=20% Similarity=0.282 Sum_probs=95.2
Q ss_pred CCCCCeEEEEEECCE-EEEeecccCCCCCeeccEEEEEEeCCCcEEEEEEEECCCCCcCCCCCCCCceeEEEEEEccccc
Q 042999 641 KGSTDAYCVAKYGKK-WVRTRTITDCFDPRWNEQYTWQVYDPCTVLTVGVFDNWRMFADASEERPDYRIGKIRIRVSTLE 719 (1006)
Q Consensus 641 ~g~sdpyv~v~~~~~-~~rT~~~~~~~nP~wne~~~~~v~~~~~~l~i~v~d~~~~~~~~~~~~~d~~lG~~~i~l~~l~ 719 (1006)
.++|||||+|.++++ ..||+++++++||+|||+|.|++.++.+.|+|+|||+|.++ +++||++.|||.++.
T Consensus 74 ~~tSDPYV~I~Lg~~rv~RTrVi~n~~NPvWNE~F~f~vah~~s~L~f~VkD~D~~g--------aD~IG~a~IPL~~L~ 145 (868)
T PLN03008 74 VITSDPYVTVVVPQATLARTRVLKNSQEPLWDEKFNISIAHPFAYLEFQVKDDDVFG--------AQIIGTAKIPVRDIA 145 (868)
T ss_pred cCCCCceEEEEECCcceeeEEeCCCCCCCCcceeEEEEecCCCceEEEEEEcCCccC--------CceeEEEEEEHHHcC
Confidence 357899999999876 56999999999999999999999998889999999999986 579999999999999
Q ss_pred CCceEeeEEEeeeeccCCcccccEEEEEEEEecCC
Q 042999 720 NNKVYTTSYPLLVLLRTGLKKMGEIELAVRFVCPS 754 (1006)
Q Consensus 720 ~~~~~~~~~~L~~~~~~g~~~~G~l~l~~~~~~~~ 754 (1006)
.|...+.|++|.+...+..+..|+|+|+++|.+-.
T Consensus 146 ~Ge~vd~Wl~Ll~~~~kp~k~~~kl~v~lqf~pv~ 180 (868)
T PLN03008 146 SGERISGWFPVLGASGKPPKAETAIFIDMKFTPFD 180 (868)
T ss_pred CCCceEEEEEccccCCCCCCCCcEEEEEEEEEEcc
Confidence 99988999999987665555668999999999763
No 95
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=99.65 E-value=1.8e-15 Score=143.97 Aligned_cols=119 Identities=25% Similarity=0.390 Sum_probs=98.9
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEEC-------------CeEEEeeCcCCCCCCee-eeEEEEEeeCCCCCCCceE
Q 042999 17 KLVVEVVDARDLLPKDGQGSSSPYVIADFD-------------GQRKRTSTKFRDLNPVW-NEPLEFIVSDPKNMDCEEL 82 (1006)
Q Consensus 17 ~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~-------------~~~~kT~~~~~t~nP~w-ne~f~f~~~~~~~~~~~~L 82 (1006)
...|++++|+||+ ++..|.+||||++.+. +++++|+++++++||+| ||+|.|.+.. .+.|
T Consensus 2 ~~~~~~~~A~~L~-~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~~-----~~~L 75 (137)
T cd08691 2 SFSLSGLQARNLK-KGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGLP-----TDVL 75 (137)
T ss_pred EEEEEEEEeCCCC-CccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcCC-----CCEE
Confidence 4679999999997 7778999999999994 24689999999999999 9999999864 4589
Q ss_pred EEEEEeCCCCCCCCCCCCceeEEEEEeCeeeeeeCC--ceeEEEEceecCCceeeeEEEEEEE
Q 042999 83 EIEVYNDKRYCNGSGRKNHFLGRVKLCGSQFARRGD--EGLVYFPLEKKSVFSWIRGEIGLRI 143 (1006)
Q Consensus 83 ~i~V~d~d~~~~~~~~~d~~lG~~~v~l~~l~~~~~--~~~~w~~L~~~~~~~~~~G~i~l~~ 143 (1006)
.|+|||++... ....+++||++.+++.+++..+. ...+|++|.+++..+.++|+|.+.+
T Consensus 76 ~v~V~D~~~~~--~~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~l~k~~~~s~v~G~~~l~~ 136 (137)
T cd08691 76 EIEVKDKFAKS--RPIIRRFLGKLSIPVQRLLERHAIGDQELSYTLGRRTPTDHVSGQLTFRF 136 (137)
T ss_pred EEEEEecCCCC--CccCCceEEEEEEEHHHhcccccCCceEEEEECCcCCCCCcEEEEEEEEe
Confidence 99999986540 00137999999999999865543 3568999999988889999999876
No 96
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.65 E-value=2e-15 Score=144.86 Aligned_cols=116 Identities=27% Similarity=0.431 Sum_probs=100.0
Q ss_pred ccEEEEEEEEecCCCCCCC----------CCCCCcEEEEEECCeE-EEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEE
Q 042999 15 VRKLVVEVVDARDLLPKDG----------QGSSSPYVIADFDGQR-KRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELE 83 (1006)
Q Consensus 15 ~~~L~V~v~~a~~L~~~~~----------~g~~dPyv~v~~~~~~-~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~ 83 (1006)
.|.|+|+|++|++|...+. .|.+||||++.+++++ .+|+++++++||.|||+|.|.+.. ...|.
T Consensus 3 ~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~-----~~~l~ 77 (132)
T cd04014 3 TGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTSTKPKTNSPVWNEEFTTEVHN-----GRNLE 77 (132)
T ss_pred ceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEEeEEeEcCCCCCCCcceeEEEEcCC-----CCEEE
Confidence 4679999999999998875 2689999999999765 799999999999999999999974 46899
Q ss_pred EEEEeCCCCCCCCCCCCceeEEEEEeCeeeeee-CCceeEEEEceecCCceeeeEEEEEEEEEEe
Q 042999 84 IEVYNDKRYCNGSGRKNHFLGRVKLCGSQFARR-GDEGLVYFPLEKKSVFSWIRGEIGLRIYYYD 147 (1006)
Q Consensus 84 i~V~d~d~~~~~~~~~d~~lG~~~v~l~~l~~~-~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~ 147 (1006)
|.|||++.. +.+++||.+.++++++... +.....|++|.+ .|+|++++.|..
T Consensus 78 ~~v~d~~~~-----~~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~~-------~G~l~l~~~~~~ 130 (132)
T cd04014 78 LTVFHDAAI-----GPDDFVANCTISFEDLIQRGSGSFDLWVDLEP-------QGKLHVKIELKG 130 (132)
T ss_pred EEEEeCCCC-----CCCceEEEEEEEhHHhcccCCCcccEEEEccC-------CcEEEEEEEEec
Confidence 999999988 6899999999999997553 455678999973 699999998865
No 97
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=99.65 E-value=9.3e-16 Score=140.61 Aligned_cols=103 Identities=32% Similarity=0.448 Sum_probs=89.8
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEECCeEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEeCCCCCCCC
Q 042999 17 KLVVEVVDARDLLPKDGQGSSSPYVIADFDGQRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYNDKRYCNGS 96 (1006)
Q Consensus 17 ~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~d~~~~~~ 96 (1006)
.|.|+|++|++|+..+..+.+||||+++++++.++|++++++.||+|||.|.|.+..+. ...|.|+|||++.
T Consensus 1 ~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~---~~~l~v~v~d~~~----- 72 (105)
T cd04050 1 LLFVYLDSAKNLPLAKSTKEPSPYVELTVGKTTQKSKVKERTNNPVWEEGFTFLVRNPE---NQELEIEVKDDKT----- 72 (105)
T ss_pred CEEEEEeeecCCCCcccCCCCCcEEEEEECCEEEeCccccCCCCCcccceEEEEeCCCC---CCEEEEEEEECCC-----
Confidence 48899999999999988899999999999999999999999999999999999998753 4589999999753
Q ss_pred CCCCceeEEEEEeCeeeeeeC-CceeEEEEceecC
Q 042999 97 GRKNHFLGRVKLCGSQFARRG-DEGLVYFPLEKKS 130 (1006)
Q Consensus 97 ~~~d~~lG~~~v~l~~l~~~~-~~~~~w~~L~~~~ 130 (1006)
+++||++.+++.++.... .....||+|.+++
T Consensus 73 ---~~~iG~~~i~l~~l~~~~~~~~~~w~~L~~~g 104 (105)
T cd04050 73 ---GKSLGSLTLPLSELLKEPDLTLDQPFPLDNSG 104 (105)
T ss_pred ---CCccEEEEEEHHHhhccccceeeeeEecCCCC
Confidence 589999999999976543 3456899998654
No 98
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=99.65 E-value=1.6e-15 Score=144.80 Aligned_cols=103 Identities=21% Similarity=0.257 Sum_probs=89.6
Q ss_pred CcEEEEEEEeeccCCccCccCCCCCCCCCeEEEEEEC-----CEEEEeecccCCCCCeeccEEEEEEeCC---CcEEEEE
Q 042999 617 PVGILELGILGARGLLPMKTKNGGKGSTDAYCVAKYG-----KKWVRTRTITDCFDPRWNEQYTWQVYDP---CTVLTVG 688 (1006)
Q Consensus 617 ~~g~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~-----~~~~rT~~~~~~~nP~wne~~~~~v~~~---~~~l~i~ 688 (1006)
..+.|.|+|++|+||++++ . .+.+||||++.+. ....||++++++.||+|||+|.|.+... ...|.|.
T Consensus 14 ~~~~L~V~vi~a~~L~~~~---~-~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~l~~~~l~i~ 89 (127)
T cd04030 14 QRQKLIVTVHKCRNLPPCD---S-SDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEELKRRTLDVA 89 (127)
T ss_pred CCCEEEEEEEEEECCCCcc---C-CCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHHHhcCCEEEEE
Confidence 3468999999999998864 4 7889999999985 4678999999999999999999998642 4689999
Q ss_pred EEECCCC--CcCCCCCCCCceeEEEEEEcccccCCceEeeEEEe
Q 042999 689 VFDNWRM--FADASEERPDYRIGKIRIRVSTLENNKVYTTSYPL 730 (1006)
Q Consensus 689 v~d~~~~--~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L 730 (1006)
|||++.+ + +|++||.+.|+|.++..+.....||+|
T Consensus 90 v~~~~~~~~~-------~~~~iG~~~i~l~~l~~~~~~~~W~~L 126 (127)
T cd04030 90 VKNSKSFLSR-------EKKLLGQVLIDLSDLDLSKGFTQWYDL 126 (127)
T ss_pred EEECCcccCC-------CCceEEEEEEecccccccCCccceEEC
Confidence 9999875 3 789999999999999877777899998
No 99
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.64 E-value=1.2e-15 Score=147.32 Aligned_cols=105 Identities=24% Similarity=0.297 Sum_probs=87.8
Q ss_pred EEEEEEeeccCCccCccCC-----------CCCCCCCeEEEEEECCEEEEeecccCCCCCeeccEEEEEEeCC--CcEEE
Q 042999 620 ILELGILGARGLLPMKTKN-----------GGKGSTDAYCVAKYGKKWVRTRTITDCFDPRWNEQYTWQVYDP--CTVLT 686 (1006)
Q Consensus 620 ~L~v~v~~a~~L~~~~~~d-----------~~~g~sdpyv~v~~~~~~~rT~~~~~~~nP~wne~~~~~v~~~--~~~l~ 686 (1006)
.|.|+|++|++|++||... . .+.+||||+|.++++..||+++++++||+|||+|.|++..+ ...|.
T Consensus 1 ~~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~-~~~~DPYV~V~~~g~~~kT~v~~~t~nPvWNE~f~f~v~~p~~~~~l~ 79 (151)
T cd04018 1 RFIFKIYRAEDLPQMDSGIMANVKKAFLGEK-KELVDPYVEVSFAGQKVKTSVKKNSYNPEWNEQIVFPEMFPPLCERIK 79 (151)
T ss_pred CeEEEEEEeCCCCccChhhhccceeccccCC-CCCcCcEEEEEECCEeeecceEcCCCCCCcceEEEEEeeCCCcCCEEE
Confidence 3789999999999987311 1 35799999999999999999999999999999999998653 56899
Q ss_pred EEEEECCCCCcCCCCCCCCceeEEEEEEcccccCCce-------EeeEEEeee
Q 042999 687 VGVFDNWRMFADASEERPDYRIGKIRIRVSTLENNKV-------YTTSYPLLV 732 (1006)
Q Consensus 687 i~v~d~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~-------~~~~~~L~~ 732 (1006)
|+|||+|..+ +|++||++.|++.++..... -..|+.|.+
T Consensus 80 ~~v~D~d~~~-------~dd~iG~~~l~l~~l~~~~~~~~lp~~~p~W~~lyg 125 (151)
T cd04018 80 IQIRDWDRVG-------NDDVIGTHFIDLSKISNSGDEGFLPTFGPSFVNLYG 125 (151)
T ss_pred EEEEECCCCC-------CCCEEEEEEEeHHHhccCCccccCCccCceEEEeec
Confidence 9999999887 89999999999998866442 136666654
No 100
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=99.64 E-value=8.2e-16 Score=142.21 Aligned_cols=105 Identities=30% Similarity=0.442 Sum_probs=90.7
Q ss_pred EEEEEEEecCCCCCCC-CCCCCcEEEEEECCeEEEeeCcCCCCCCee-eeEEEEEeeCCCCCCCceEEEEEEeCCCCCCC
Q 042999 18 LVVEVVDARDLLPKDG-QGSSSPYVIADFDGQRKRTSTKFRDLNPVW-NEPLEFIVSDPKNMDCEELEIEVYNDKRYCNG 95 (1006)
Q Consensus 18 L~V~v~~a~~L~~~~~-~g~~dPyv~v~~~~~~~kT~~~~~t~nP~w-ne~f~f~~~~~~~~~~~~L~i~V~d~d~~~~~ 95 (1006)
|.|+|++|++|+.++. .|.+||||++.+++++++|+++++++||.| ||+|.|.+.... +....|.|+|||++.+
T Consensus 1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~kT~v~~~~~nP~W~ne~f~f~i~~~~-l~~~~l~i~V~d~d~~--- 76 (110)
T cd08688 1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGSTTYKTDVVKKSLNPVWNSEWFRFEVDDEE-LQDEPLQIRVMDHDTY--- 76 (110)
T ss_pred CEEEEEEEECCCccccCCCCCCceEEEEECCeeEecceecCCCCCcccCcEEEEEcChHH-cCCCeEEEEEEeCCCC---
Confidence 6799999999998884 688999999999999999999999999999 999999987643 2256899999999998
Q ss_pred CCCCCceeEEEEEeCeeeeee--CCceeEEEEcee
Q 042999 96 SGRKNHFLGRVKLCGSQFARR--GDEGLVYFPLEK 128 (1006)
Q Consensus 96 ~~~~d~~lG~~~v~l~~l~~~--~~~~~~w~~L~~ 128 (1006)
+++++||++.+++.++... ......||+|.+
T Consensus 77 --~~~~~iG~~~~~l~~l~~~~~~~~~~~w~~l~~ 109 (110)
T cd08688 77 --SANDAIGKVYIDLNPLLLKDSVSQISGWFPIYD 109 (110)
T ss_pred --CCCCceEEEEEeHHHhcccCCccccCCeEEccc
Confidence 7899999999999997653 233557999864
No 101
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=99.64 E-value=1.2e-15 Score=139.63 Aligned_cols=93 Identities=25% Similarity=0.378 Sum_probs=82.0
Q ss_pred cEEEEEEEEecCCCCCCC----CCCCCcEEEEEECCeEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEeCCC
Q 042999 16 RKLVVEVVDARDLLPKDG----QGSSSPYVIADFDGQRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYNDKR 91 (1006)
Q Consensus 16 ~~L~V~v~~a~~L~~~~~----~g~~dPyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~d~ 91 (1006)
|.|.|+|++|++|+..+. ++.+||||++.++++.+||+++++++||+|||.|.|.+..... ...|.|+|||++.
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~~~~kT~v~~~t~nPvWne~f~f~v~~~~~--~~~L~~~V~D~d~ 78 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGRRVFRTSWRRHTLNPVFNERLAFEVYPHEK--NFDIQFKVLDKDK 78 (108)
T ss_pred CEEEEEEEeeeCCCCccccCCCCCccCceEEEEECCEeEeeeeecCCCCCcccceEEEEEeCccC--CCEEEEEEEECCC
Confidence 589999999999998763 2458999999999999999999999999999999999876431 4589999999999
Q ss_pred CCCCCCCCCceeEEEEEeCeeeee
Q 042999 92 YCNGSGRKNHFLGRVKLCGSQFAR 115 (1006)
Q Consensus 92 ~~~~~~~~d~~lG~~~v~l~~l~~ 115 (1006)
. ++|++||++.++|++++.
T Consensus 79 ~-----~~dd~IG~~~l~L~~l~~ 97 (108)
T cd04039 79 F-----SFNDYVATGSLSVQELLN 97 (108)
T ss_pred C-----CCCcceEEEEEEHHHHHh
Confidence 8 799999999999999754
No 102
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=99.64 E-value=1.1e-15 Score=144.62 Aligned_cols=106 Identities=23% Similarity=0.472 Sum_probs=89.4
Q ss_pred ccEEEEEEEEecCCCCCCCC-CCCCcEEEEEEC-----CeEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEe
Q 042999 15 VRKLVVEVVDARDLLPKDGQ-GSSSPYVIADFD-----GQRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYN 88 (1006)
Q Consensus 15 ~~~L~V~v~~a~~L~~~~~~-g~~dPyv~v~~~-----~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d 88 (1006)
.+.|.|+|++|+||++++.. |.+||||++++. ..++||++++++.||+|||+|.|.+... .+....|.+.|||
T Consensus 14 ~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~~-~l~~~~L~v~V~~ 92 (128)
T cd08392 14 TSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVVEAD-LLSSRQLQVSVWH 92 (128)
T ss_pred CCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEEcCHH-HhCCcEEEEEEEe
Confidence 46899999999999999875 899999999995 3468999999999999999999998653 2335789999999
Q ss_pred CCCCCCCCCCCCceeEEEEEeCeeeeee--CCceeEEEEc
Q 042999 89 DKRYCNGSGRKNHFLGRVKLCGSQFARR--GDEGLVYFPL 126 (1006)
Q Consensus 89 ~d~~~~~~~~~d~~lG~~~v~l~~l~~~--~~~~~~w~~L 126 (1006)
.+.+ +++++||++.|+|+++--. +.....||+|
T Consensus 93 ~~~~-----~~~~~lG~~~i~L~~~~~~~~~~~~~~W~~l 127 (128)
T cd08392 93 SRTL-----KRRVFLGEVLIPLADWDFEDTDSQRFLWYPL 127 (128)
T ss_pred CCCC-----cCcceEEEEEEEcCCcccCCCCccccceEEC
Confidence 9998 7899999999999996222 2345589988
No 103
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=99.63 E-value=1.1e-15 Score=143.11 Aligned_cols=107 Identities=20% Similarity=0.233 Sum_probs=90.6
Q ss_pred cccEEEEEEEEecCCCCCCCCCCCCcEEEEEEC------CeEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEE
Q 042999 14 TVRKLVVEVVDARDLLPKDGQGSSSPYVIADFD------GQRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVY 87 (1006)
Q Consensus 14 ~~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~------~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~ 87 (1006)
..+.|.|+|++|+||.+++..|.+||||++++- ..+++|+++++++||+|||+|.|.+... ++.+..|.|.||
T Consensus 12 ~~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~-~L~~~~L~~~V~ 90 (124)
T cd08680 12 GDSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISST-KLYQKTLQVDVC 90 (124)
T ss_pred CCCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHH-HhhcCEEEEEEE
Confidence 356899999999999999888999999999983 2479999999999999999999998763 344789999999
Q ss_pred eCCCCCCCCCCCCceeEEEEEeCeeeeeeCCceeEEEEc
Q 042999 88 NDKRYCNGSGRKNHFLGRVKLCGSQFARRGDEGLVYFPL 126 (1006)
Q Consensus 88 d~d~~~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L 126 (1006)
|++.. +++++||.+.++++++-..+.....||.|
T Consensus 91 ~~~~~-----~~~~~lG~~~i~L~~~~~~~~~~~~Wy~l 124 (124)
T cd08680 91 SVGPD-----QQEECLGGAQISLADFESSEEMSTKWYNL 124 (124)
T ss_pred eCCCC-----CceeEEEEEEEEhhhccCCCccccccccC
Confidence 99988 78999999999999962333335578875
No 104
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=99.63 E-value=1.6e-15 Score=145.98 Aligned_cols=92 Identities=29% Similarity=0.488 Sum_probs=84.6
Q ss_pred cEEEEEEEeeccCCccCccCCCCCCCCCeEEEEEECCEEEEeecccCCCCCeeccEEEEEEeCCCcEEEEEEEECCCCCc
Q 042999 618 VGILELGILGARGLLPMKTKNGGKGSTDAYCVAKYGKKWVRTRTITDCFDPRWNEQYTWQVYDPCTVLTVGVFDNWRMFA 697 (1006)
Q Consensus 618 ~g~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~~~~~rT~~~~~~~nP~wne~~~~~v~~~~~~l~i~v~d~~~~~~ 697 (1006)
+|.|+|+|++|+||+..+ .+.+||||+++++++..||+++++++||+|||+|.|.+.++...|.|+|||++.++
T Consensus 1 ~G~L~V~Vi~a~nL~~~d-----~~~sDPYV~v~~g~~~~kT~vvk~t~nP~WnE~f~f~i~~~~~~l~~~V~D~d~~~- 74 (145)
T cd04038 1 LGLLKVRVVRGTNLAVRD-----FTSSDPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLSVPNPMAPLKLEVFDKDTFS- 74 (145)
T ss_pred CeEEEEEEEeeECCCCCC-----CCCcCcEEEEEECCEEEEeeeEcCCCCCeecccEEEEecCCCCEEEEEEEECCCCC-
Confidence 589999999999998754 35799999999999999999999999999999999999999889999999999987
Q ss_pred CCCCCCCCceeEEEEEEcccccCC
Q 042999 698 DASEERPDYRIGKIRIRVSTLENN 721 (1006)
Q Consensus 698 ~~~~~~~d~~lG~~~i~l~~l~~~ 721 (1006)
+|++||.+.+++.++...
T Consensus 75 ------~dd~iG~a~i~l~~l~~~ 92 (145)
T cd04038 75 ------KDDSMGEAEIDLEPLVEA 92 (145)
T ss_pred ------CCCEEEEEEEEHHHhhhh
Confidence 899999999999987643
No 105
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=99.63 E-value=2.1e-15 Score=141.40 Aligned_cols=95 Identities=24% Similarity=0.346 Sum_probs=84.1
Q ss_pred CCCcEEEEEEEeeccCCccCccCCCCCCCCCeEEEEEECCEEEEeecccCCCCCeeccEEEEEEeC--CCcEEEEEEEEC
Q 042999 615 KPPVGILELGILGARGLLPMKTKNGGKGSTDAYCVAKYGKKWVRTRTITDCFDPRWNEQYTWQVYD--PCTVLTVGVFDN 692 (1006)
Q Consensus 615 ~~~~g~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~~~~~rT~~~~~~~nP~wne~~~~~v~~--~~~~l~i~v~d~ 692 (1006)
+..+|.|+|+|++|+||+. +. .|.+||||+|.++++.+||+++++++||+|||+|.|.... ....|+|+|||+
T Consensus 24 ~~~~~~L~V~V~~A~~L~~----d~-~g~~DPYVkV~~~~~~~kT~vi~~t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~ 98 (127)
T cd04032 24 RRGLATLTVTVLRATGLWG----DY-FTSTDGYVKVFFGGQEKRTEVIWNNNNPRWNATFDFGSVELSPGGKLRFEVWDR 98 (127)
T ss_pred cCCcEEEEEEEEECCCCCc----Cc-CCCCCeEEEEEECCccccCceecCCCCCcCCCEEEEecccCCCCCEEEEEEEeC
Confidence 4678999999999999963 34 7789999999999999999999999999999999998544 467999999999
Q ss_pred CCCCcCCCCCCCCceeEEEEEEcccccCC
Q 042999 693 WRMFADASEERPDYRIGKIRIRVSTLENN 721 (1006)
Q Consensus 693 ~~~~~~~~~~~~d~~lG~~~i~l~~l~~~ 721 (1006)
|.++ +|++||++.++|.....+
T Consensus 99 d~~s-------~dd~IG~~~i~l~~~~~~ 120 (127)
T cd04032 99 DNGW-------DDDLLGTCSVVPEAGVHE 120 (127)
T ss_pred CCCC-------CCCeeEEEEEEecCCcee
Confidence 9987 899999999999976644
No 106
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=99.63 E-value=4e-15 Score=141.70 Aligned_cols=114 Identities=20% Similarity=0.276 Sum_probs=96.4
Q ss_pred EEEEEEeeccCCccCccCCCCCCCCCeEEEEEECC---EEEEeecccCCCCCeeccEEEEEEeCC-CcEEEEEEEECCCC
Q 042999 620 ILELGILGARGLLPMKTKNGGKGSTDAYCVAKYGK---KWVRTRTITDCFDPRWNEQYTWQVYDP-CTVLTVGVFDNWRM 695 (1006)
Q Consensus 620 ~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~~---~~~rT~~~~~~~nP~wne~~~~~v~~~-~~~l~i~v~d~~~~ 695 (1006)
.|+|+|++|++|++++ . .|.+||||++.+++ ...||+++.+++||.|||+|.|.+... ...|.|+|||++..
T Consensus 2 ~~~V~v~~a~~L~~~~---~-~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~i~~~~~~~L~i~v~d~d~~ 77 (126)
T cd04043 2 LFTIRIVRAENLKADS---S-NGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGEPLWISATVWDRSFV 77 (126)
T ss_pred EEEEEEEEeECCCCCC---C-CCCCCceEEEEECCCCeeeecccEecCCCCCcccceEEEEcCCCCCCEEEEEEEECCCC
Confidence 5899999999998854 4 78999999999864 467999999999999999999999874 56899999999987
Q ss_pred CcCCCCCCCCceeEEEEEEcccccC---CceEeeEEEeeeeccCCcccccEEEEEEEEec
Q 042999 696 FADASEERPDYRIGKIRIRVSTLEN---NKVYTTSYPLLVLLRTGLKKMGEIELAVRFVC 752 (1006)
Q Consensus 696 ~~~~~~~~~d~~lG~~~i~l~~l~~---~~~~~~~~~L~~~~~~g~~~~G~l~l~~~~~~ 752 (1006)
+ ++++||++.++|..+.. +...+.|++|.. .|+|++++.+..
T Consensus 78 ~-------~~~~iG~~~i~l~~~~~~~~~~~~~~w~~l~~--------~g~i~l~~~~~~ 122 (126)
T cd04043 78 G-------KHDLCGRASLKLDPKRFGDDGLPREIWLDLDT--------QGRLLLRVSMEG 122 (126)
T ss_pred C-------CCceEEEEEEecCHHHcCCCCCCceEEEEcCC--------CCeEEEEEEEee
Confidence 6 79999999999987643 335578999942 399999988864
No 107
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=99.63 E-value=1.1e-15 Score=141.59 Aligned_cols=104 Identities=30% Similarity=0.416 Sum_probs=87.7
Q ss_pred cEEEEEEEEecCCCCCCCC-CCCCcEEEEEEC---CeEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEeCCC
Q 042999 16 RKLVVEVVDARDLLPKDGQ-GSSSPYVIADFD---GQRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYNDKR 91 (1006)
Q Consensus 16 ~~L~V~v~~a~~L~~~~~~-g~~dPyv~v~~~---~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~d~ 91 (1006)
|.|+|+|++|++|+..+.. |.+||||++++. ...++|+++++++||+|||+|.|.+...+......|.|+|||++.
T Consensus 1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~ 80 (111)
T cd04041 1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSDR 80 (111)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCCC
Confidence 5899999999999999987 899999999984 345899999999999999999998865422224689999999999
Q ss_pred CCCCCCCCCceeEEEEEeCeeeeeeCCceeEEEEcee
Q 042999 92 YCNGSGRKNHFLGRVKLCGSQFARRGDEGLVYFPLEK 128 (1006)
Q Consensus 92 ~~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~ 128 (1006)
+ ++|++||++.+++.+++.. ..|+++..
T Consensus 81 ~-----~~dd~lG~~~i~l~~l~~~----~~~~~~~~ 108 (111)
T cd04041 81 F-----TADDRLGRVEIDLKELIED----RNWMGRRE 108 (111)
T ss_pred C-----CCCCcceEEEEEHHHHhcC----CCCCcccc
Confidence 8 7899999999999997532 24877653
No 108
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=99.63 E-value=3.4e-15 Score=141.58 Aligned_cols=104 Identities=19% Similarity=0.289 Sum_probs=88.9
Q ss_pred CcEEEEEEEeeccCCccCccCCCCCCCCCeEEEEEEC-----CEEEEeecccCCCCCeeccEEEEEEeC---CCcEEEEE
Q 042999 617 PVGILELGILGARGLLPMKTKNGGKGSTDAYCVAKYG-----KKWVRTRTITDCFDPRWNEQYTWQVYD---PCTVLTVG 688 (1006)
Q Consensus 617 ~~g~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~-----~~~~rT~~~~~~~nP~wne~~~~~v~~---~~~~l~i~ 688 (1006)
..|.|.|+|++|+||++++. . .|.+||||++.+. ....||++++++.||+|||+|.|.+.. ....|.|.
T Consensus 12 ~~~~L~V~v~~a~~L~~~~~--~-~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~~l~~~~l~i~ 88 (123)
T cd08521 12 KTGSLEVHIKECRNLAYADE--K-KKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKSQLETRTLQLS 88 (123)
T ss_pred CCCEEEEEEEEecCCCCcCC--C-CCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCHHHhCCCEEEEE
Confidence 45789999999999988641 3 6789999999873 146799999999999999999999865 25689999
Q ss_pred EEECCCCCcCCCCCCCCceeEEEEEEcccccCCceEeeEEEe
Q 042999 689 VFDNWRMFADASEERPDYRIGKIRIRVSTLENNKVYTTSYPL 730 (1006)
Q Consensus 689 v~d~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L 730 (1006)
|||++.++ ++++||.+.++|.++..+...+.||+|
T Consensus 89 v~d~~~~~-------~~~~iG~~~i~l~~l~~~~~~~~w~~l 123 (123)
T cd08521 89 VWHHDRFG-------RNTFLGEVEIPLDSWDLDSQQSEWYPL 123 (123)
T ss_pred EEeCCCCc-------CCceeeEEEEecccccccCCCccEEEC
Confidence 99999876 789999999999999777667899987
No 109
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.63 E-value=1.8e-15 Score=143.97 Aligned_cols=107 Identities=31% Similarity=0.525 Sum_probs=89.6
Q ss_pred cccEEEEEEEEecCCCCCCCCCCCCcEEEEEECC-----eEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEe
Q 042999 14 TVRKLVVEVVDARDLLPKDGQGSSSPYVIADFDG-----QRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYN 88 (1006)
Q Consensus 14 ~~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~-----~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d 88 (1006)
..+.|.|+|++|++|..++..+.+||||++.+.+ .+++|+++++++||+|||+|.|.+....+.....|.|+|||
T Consensus 14 ~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~l~~~V~d 93 (125)
T cd04031 14 VTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRETLKERTLEVTVWD 93 (125)
T ss_pred CCCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHHHhCCCEEEEEEEe
Confidence 3578999999999999999889999999999963 56899999999999999999998654322335689999999
Q ss_pred CCCCCCCCCCCCceeEEEEEeCeeeeeeCCceeEEEEce
Q 042999 89 DKRYCNGSGRKNHFLGRVKLCGSQFARRGDEGLVYFPLE 127 (1006)
Q Consensus 89 ~d~~~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~ 127 (1006)
++.. +++++||++.+++++... .....||+|+
T Consensus 94 ~~~~-----~~~~~iG~~~i~l~~~~~--~~~~~W~~L~ 125 (125)
T cd04031 94 YDRD-----GENDFLGEVVIDLADALL--DDEPHWYPLQ 125 (125)
T ss_pred CCCC-----CCCcEeeEEEEecccccc--cCCcceEECc
Confidence 9998 789999999999998322 2235799985
No 110
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=99.63 E-value=6.1e-15 Score=142.21 Aligned_cols=118 Identities=25% Similarity=0.344 Sum_probs=93.6
Q ss_pred EEEEEeeccC--CccCccCCCCCCCCCeEEEEEE-----CCEEEEeecccCCCCCeeccEEEEEEeCC---------CcE
Q 042999 621 LELGILGARG--LLPMKTKNGGKGSTDAYCVAKY-----GKKWVRTRTITDCFDPRWNEQYTWQVYDP---------CTV 684 (1006)
Q Consensus 621 L~v~v~~a~~--L~~~~~~d~~~g~sdpyv~v~~-----~~~~~rT~~~~~~~nP~wne~~~~~v~~~---------~~~ 684 (1006)
..++|..|.| |++.+ . .+.+||||++.+ +.+..||+++++|+||+|||+|.|.|... ...
T Consensus 4 ~el~i~~~~~~~l~~~~---~-~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~ 79 (155)
T cd08690 4 IELTIVRCIGIPLPSGW---N-PKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHG 79 (155)
T ss_pred eEEEEEEeeccccCCCc---C-CCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCc
Confidence 3455555555 66643 3 778999999986 35689999999999999999999999654 346
Q ss_pred EEEEEEECCCCCcCCCCCCCCceeEEEEEEcccccCCceEeeEEEeeeeccCCcc-cccEEEEEEEEec
Q 042999 685 LTVGVFDNWRMFADASEERPDYRIGKIRIRVSTLENNKVYTTSYPLLVLLRTGLK-KMGEIELAVRFVC 752 (1006)
Q Consensus 685 l~i~v~d~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~-~~G~l~l~~~~~~ 752 (1006)
|.|+|||++.+. .+|++||++.|+|..+..+.....|++|.. |.+ ..|.|+++++...
T Consensus 80 L~~~V~d~~~f~------~~D~~iG~~~i~L~~l~~~~~~~~~~~L~~----~~k~~Gg~l~v~ir~r~ 138 (155)
T cd08690 80 LKFEVYHKGGFL------RSDKLLGTAQVKLEPLETKCEIHESVDLMD----GRKATGGKLEVKVRLRE 138 (155)
T ss_pred EEEEEEeCCCcc------cCCCeeEEEEEEcccccccCcceEEEEhhh----CCCCcCCEEEEEEEecC
Confidence 999999999863 169999999999999987766678999974 222 3499999999864
No 111
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=99.63 E-value=2e-15 Score=143.27 Aligned_cols=107 Identities=25% Similarity=0.384 Sum_probs=88.3
Q ss_pred ccEEEEEEEEecCCCCCCCC-CCCCcEEEEEEC---CeEEEeeCcCCCCCCeeeeEEEEE-eeCCCCCCCceEEEEEEeC
Q 042999 15 VRKLVVEVVDARDLLPKDGQ-GSSSPYVIADFD---GQRKRTSTKFRDLNPVWNEPLEFI-VSDPKNMDCEELEIEVYND 89 (1006)
Q Consensus 15 ~~~L~V~v~~a~~L~~~~~~-g~~dPyv~v~~~---~~~~kT~~~~~t~nP~wne~f~f~-~~~~~~~~~~~L~i~V~d~ 89 (1006)
.+.|.|+|++|+||+.++.. |.+||||++.+. .+++||+++++++||+|||+|.|. +.. .......|.|+|||+
T Consensus 15 ~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~t~nP~wnE~F~f~~~~~-~~~~~~~L~~~V~d~ 93 (128)
T cd08388 15 KKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIPY-NQLQDLSLHFAVLSF 93 (128)
T ss_pred CCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEcCCCCCceeeEEEEcccCH-HHhCCCEEEEEEEEc
Confidence 56899999999999998875 899999999995 456899999999999999999994 432 222245799999999
Q ss_pred CCCCCCCCCCCceeEEEEEeCeeee-eeCCceeEEEEce
Q 042999 90 KRYCNGSGRKNHFLGRVKLCGSQFA-RRGDEGLVYFPLE 127 (1006)
Q Consensus 90 d~~~~~~~~~d~~lG~~~v~l~~l~-~~~~~~~~w~~L~ 127 (1006)
+.+ +++++||++.++++++- ..+.....|.+|+
T Consensus 94 d~~-----~~d~~lG~~~i~L~~l~~~~~~~~~~~~~~~ 127 (128)
T cd08388 94 DRY-----SRDDVIGEVVCPLAGADLLNEGELLVSREIQ 127 (128)
T ss_pred CCC-----CCCceeEEEEEeccccCCCCCceEEEEEecc
Confidence 998 78999999999999962 2234566898885
No 112
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=99.62 E-value=1.8e-15 Score=143.87 Aligned_cols=113 Identities=24% Similarity=0.313 Sum_probs=95.4
Q ss_pred EEEEEEeeccCCccCccCCCCCCCCCeEEEEEECC-EEEEeeccc-CCCCCeeccEEEEEEeCC-----CcEEEEEEEEC
Q 042999 620 ILELGILGARGLLPMKTKNGGKGSTDAYCVAKYGK-KWVRTRTIT-DCFDPRWNEQYTWQVYDP-----CTVLTVGVFDN 692 (1006)
Q Consensus 620 ~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~~-~~~rT~~~~-~~~nP~wne~~~~~v~~~-----~~~l~i~v~d~ 692 (1006)
+|+|+|++|++|+..+ . .+++||||++++++ +..+|+++. ++.||.|||.|.|.+.++ ...|.|+|||+
T Consensus 1 ~L~V~V~sA~~L~~~~---~-~~~~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~ 76 (125)
T cd04051 1 TLEITIISAEDLKNVN---L-FGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCE 76 (125)
T ss_pred CEEEEEEEcccCCCCC---c-ccCCceEEEEEECCCcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEEC
Confidence 4899999999998754 4 78999999999988 889999986 589999999999999877 57899999999
Q ss_pred CCCCcCCCCCCCCceeEEEEEEcccccCCce-----EeeEEEeeeeccCCcccccEEEE
Q 042999 693 WRMFADASEERPDYRIGKIRIRVSTLENNKV-----YTTSYPLLVLLRTGLKKMGEIEL 746 (1006)
Q Consensus 693 ~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~-----~~~~~~L~~~~~~g~~~~G~l~l 746 (1006)
+.++ +|++||.+.|+|.++..+.. ...||+|.... | +..|.|++
T Consensus 77 ~~~~-------~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~--g-~~~G~~~~ 125 (125)
T cd04051 77 RPSL-------GDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPS--G-KPQGVLNF 125 (125)
T ss_pred CCCC-------CCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCC--C-CcCeEEeC
Confidence 9876 79999999999999986543 46899997643 3 33498874
No 113
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.62 E-value=3.2e-15 Score=138.62 Aligned_cols=100 Identities=18% Similarity=0.243 Sum_probs=87.9
Q ss_pred cEEEEEEEeeccCCccCccCCCCCCCCCeEEEEEECCEEEEeecccCCCCCeeccEEEEEEeCC-----CcEEEEEEEEC
Q 042999 618 VGILELGILGARGLLPMKTKNGGKGSTDAYCVAKYGKKWVRTRTITDCFDPRWNEQYTWQVYDP-----CTVLTVGVFDN 692 (1006)
Q Consensus 618 ~g~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~~~~~rT~~~~~~~nP~wne~~~~~v~~~-----~~~l~i~v~d~ 692 (1006)
-..|+|+|++|++|+ +|.+||||+++++++..+|++++++.||.|||+|.|.+..+ ...|.|+|||+
T Consensus 3 ~~~l~V~v~~a~~L~--------~~~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~ 74 (111)
T cd04011 3 DFQVRVRVIEARQLV--------GGNIDPVVKVEVGGQKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDS 74 (111)
T ss_pred cEEEEEEEEEcccCC--------CCCCCCEEEEEECCEeeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcC
Confidence 357899999999995 45799999999999999999999999999999999998654 35899999999
Q ss_pred CCCCcCCCCCCCCceeEEEEEEcccccCC---ceEeeEEEeee
Q 042999 693 WRMFADASEERPDYRIGKIRIRVSTLENN---KVYTTSYPLLV 732 (1006)
Q Consensus 693 ~~~~~~~~~~~~d~~lG~~~i~l~~l~~~---~~~~~~~~L~~ 732 (1006)
+.++ +|++||.+.|+|+++..+ .....||+|.+
T Consensus 75 ~~~~-------~~~~iG~~~i~l~~v~~~~~~~~~~~w~~L~~ 110 (111)
T cd04011 75 RSLR-------SDTLIGSFKLDVGTVYDQPDHAFLRKWLLLTD 110 (111)
T ss_pred cccc-------cCCccEEEEECCccccCCCCCcceEEEEEeeC
Confidence 9887 789999999999999665 45688999954
No 114
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.62 E-value=6.5e-15 Score=140.30 Aligned_cols=119 Identities=24% Similarity=0.298 Sum_probs=101.3
Q ss_pred EEEecCCCCCCCCCCCCcEEEEEECCeEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEeCCCCCCCCCCCCc
Q 042999 22 VVDARDLLPKDGQGSSSPYVIADFDGQRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYNDKRYCNGSGRKNH 101 (1006)
Q Consensus 22 v~~a~~L~~~~~~g~~dPyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~d~~~~~~~~~d~ 101 (1006)
|++|++|+. ..|.+||||++.+++.+++|++++++.||+|||+|.|.+.... .....|.|+|||++.. ++++
T Consensus 2 vi~a~~L~~--~~g~~Dpyv~v~~~~~~~kT~v~~~~~nP~Wne~f~f~~~~~~-~~~~~l~~~v~d~~~~-----~~d~ 73 (127)
T cd08373 2 VVSLKNLPG--LKGKGDRIAKVTFRGVKKKTRVLENELNPVWNETFEWPLAGSP-DPDESLEIVVKDYEKV-----GRNR 73 (127)
T ss_pred eEEeeCCcc--cCCCCCCEEEEEECCEeeecceeCCCcCCcccceEEEEeCCCc-CCCCEEEEEEEECCCC-----CCCc
Confidence 789999988 5789999999999999999999999999999999999997642 2267899999999998 7899
Q ss_pred eeEEEEEeCeeeeeeCCceeEEEEceecCCceeeeEEEEEEEEEEecCc
Q 042999 102 FLGRVKLCGSQFARRGDEGLVYFPLEKKSVFSWIRGEIGLRIYYYDELS 150 (1006)
Q Consensus 102 ~lG~~~v~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~~~~ 150 (1006)
+||++.++++++. .+.....|++|.+.+.. ...|+|++++.|.+...
T Consensus 74 ~iG~~~~~l~~l~-~~~~~~~~~~L~~~~~~-~~~~~l~l~~~~~~~~~ 120 (127)
T cd08373 74 LIGSATVSLQDLV-SEGLLEVTEPLLDSNGR-PTGATISLEVSYQPPDG 120 (127)
T ss_pred eEEEEEEEhhHcc-cCCceEEEEeCcCCCCC-cccEEEEEEEEEeCCCC
Confidence 9999999999974 45556689999865432 24799999999998874
No 115
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=99.62 E-value=2.7e-15 Score=142.35 Aligned_cols=103 Identities=24% Similarity=0.363 Sum_probs=92.4
Q ss_pred EEEEEEEeeccCCccCccCCCCCCCCCeEEEEEECCEEEEeecccC-CCCCeeccEEEEEEeCC----CcEEEEEEEECC
Q 042999 619 GILELGILGARGLLPMKTKNGGKGSTDAYCVAKYGKKWVRTRTITD-CFDPRWNEQYTWQVYDP----CTVLTVGVFDNW 693 (1006)
Q Consensus 619 g~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~~~~~rT~~~~~-~~nP~wne~~~~~v~~~----~~~l~i~v~d~~ 693 (1006)
|.|+|+|++|+||++++ . .+++||||++++++...+|+++.+ +.||.|||.|.|.+..+ ...|.|+|||++
T Consensus 1 g~L~V~V~~A~~L~~~~---~-~~~~dpyv~v~~~~~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~ 76 (124)
T cd04049 1 GTLEVLLISAKGLQDTD---F-LGKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKD 76 (124)
T ss_pred CeEEEEEEecCCCCCCC---C-CCCcCceEEEEECCEeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECc
Confidence 78999999999998754 4 778999999999999999999885 89999999999999886 568999999999
Q ss_pred CCCcCCCCCCCCceeEEEEEEcccccCCceEeeEEEeee
Q 042999 694 RMFADASEERPDYRIGKIRIRVSTLENNKVYTTSYPLLV 732 (1006)
Q Consensus 694 ~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 732 (1006)
.++ +|++||.+.+++.++..+...+.||+|..
T Consensus 77 ~~~-------~d~~iG~~~i~l~~l~~~~~~~~~~~l~p 108 (124)
T cd04049 77 NFS-------DDDFIGEATIHLKGLFEEGVEPGTAELVP 108 (124)
T ss_pred cCC-------CCCeEEEEEEEhHHhhhCCCCcCceEeec
Confidence 876 78999999999999987766789999965
No 116
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=99.62 E-value=3.4e-15 Score=147.33 Aligned_cols=106 Identities=18% Similarity=0.302 Sum_probs=90.9
Q ss_pred CCcEEEEEEEeeccCCccCccCCCCCCCCCeEEEEEE-----CCEEEEeecccCCCCCeeccEEEEEEeC----CCcEEE
Q 042999 616 PPVGILELGILGARGLLPMKTKNGGKGSTDAYCVAKY-----GKKWVRTRTITDCFDPRWNEQYTWQVYD----PCTVLT 686 (1006)
Q Consensus 616 ~~~g~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~-----~~~~~rT~~~~~~~nP~wne~~~~~v~~----~~~~l~ 686 (1006)
...|.|.|+|++|+||++++ . .|.+||||++.+ +....||+++++++||.|||.|.|.+.. ....|.
T Consensus 24 ~~~g~L~V~Vi~A~nL~~~d---~-~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~ 99 (162)
T cd04020 24 PSTGELHVWVKEAKNLPALK---S-GGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLE 99 (162)
T ss_pred CCCceEEEEEEeeeCCCCCC---C-CCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCCCEEEEecCCHHHhCCCEEE
Confidence 46899999999999999864 4 788999999987 2457899999999999999999998643 335799
Q ss_pred EEEEECCCCCcCCCCCCCCceeEEEEEEcccccCCceEeeEEEeee
Q 042999 687 VGVFDNWRMFADASEERPDYRIGKIRIRVSTLENNKVYTTSYPLLV 732 (1006)
Q Consensus 687 i~v~d~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 732 (1006)
|+|||++.++ +|++||.+.+++.++........||.|.+
T Consensus 100 i~V~d~d~~~-------~d~~lG~v~i~l~~~~~~~~~~~w~~~~~ 138 (162)
T cd04020 100 LTVWDHDKLS-------SNDFLGGVRLGLGTGKSYGQAVDWMDSTG 138 (162)
T ss_pred EEEEeCCCCC-------CCceEEEEEEeCCccccCCCccccccCCh
Confidence 9999999886 79999999999999876656688988854
No 117
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=99.61 E-value=2e-15 Score=141.02 Aligned_cols=105 Identities=25% Similarity=0.378 Sum_probs=87.9
Q ss_pred cccEEEEEEEEecCCCCCCCCCCCCcEEEEEECC-----eEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEe
Q 042999 14 TVRKLVVEVVDARDLLPKDGQGSSSPYVIADFDG-----QRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYN 88 (1006)
Q Consensus 14 ~~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~-----~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d 88 (1006)
..+.|.|+|++|+||++++ .|.+||||++++.. .+++|++++++.||+|||+|.|.+.... . ...|.|.|||
T Consensus 10 ~~~~L~V~Vi~ar~L~~~~-~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~-~-~~~l~v~V~~ 86 (119)
T cd08685 10 QNRKLTLHVLEAKGLRSTN-SGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERD-Y-QKRLLVTVWN 86 (119)
T ss_pred cCCEEEEEEEEEECCCCCC-CCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHH-h-CCEEEEEEEC
Confidence 3578999999999999998 78999999999952 3579999999999999999999986532 2 3468999999
Q ss_pred CCCCCCCCCCCCceeEEEEEeCeeeeeeCCceeEEEEc
Q 042999 89 DKRYCNGSGRKNHFLGRVKLCGSQFARRGDEGLVYFPL 126 (1006)
Q Consensus 89 ~d~~~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L 126 (1006)
++... .++++||.+.+++.++. .+.....||.|
T Consensus 87 ~~~~~----~~~~~lG~~~i~l~~~~-~~~~~~~Wy~l 119 (119)
T cd08685 87 KLSKS----RDSGLLGCMSFGVKSIV-NQKEISGWYYL 119 (119)
T ss_pred CCCCc----CCCEEEEEEEecHHHhc-cCccccceEeC
Confidence 99871 24789999999999975 55556789976
No 118
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=99.61 E-value=7.1e-15 Score=139.98 Aligned_cols=118 Identities=24% Similarity=0.333 Sum_probs=99.8
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEECC---eEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEeCCCCC
Q 042999 17 KLVVEVVDARDLLPKDGQGSSSPYVIADFDG---QRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYNDKRYC 93 (1006)
Q Consensus 17 ~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~---~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~d~~~ 93 (1006)
.|.|+|++|++|+..+..+.+||||++.+++ ..++|+++++++||.|||+|.|.+.... ...|.|+|||++..
T Consensus 2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~i~~~~---~~~L~i~v~d~d~~- 77 (126)
T cd04043 2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGE---PLWISATVWDRSFV- 77 (126)
T ss_pred EEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecCCCCCcccceEEEEcCCCC---CCEEEEEEEECCCC-
Confidence 6899999999999999889999999999864 3589999999999999999999988742 56899999999988
Q ss_pred CCCCCCCceeEEEEEeCeeeee-e-CCceeEEEEceecCCceeeeEEEEEEEEEEecC
Q 042999 94 NGSGRKNHFLGRVKLCGSQFAR-R-GDEGLVYFPLEKKSVFSWIRGEIGLRIYYYDEL 149 (1006)
Q Consensus 94 ~~~~~~d~~lG~~~v~l~~l~~-~-~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~~~ 149 (1006)
+++++||++.++++.+.. . +.....|++|.+ .|++++++.+....
T Consensus 78 ----~~~~~iG~~~i~l~~~~~~~~~~~~~~w~~l~~-------~g~i~l~~~~~~~~ 124 (126)
T cd04043 78 ----GKHDLCGRASLKLDPKRFGDDGLPREIWLDLDT-------QGRLLLRVSMEGER 124 (126)
T ss_pred ----CCCceEEEEEEecCHHHcCCCCCCceEEEEcCC-------CCeEEEEEEEeeec
Confidence 689999999999987532 2 334568999964 68999998887653
No 119
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.61 E-value=3.2e-15 Score=142.11 Aligned_cols=107 Identities=25% Similarity=0.365 Sum_probs=91.8
Q ss_pred ccEEEEEEEEecCCCCCCCCCCCCcEEEEEEC---CeEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEeCCC
Q 042999 15 VRKLVVEVVDARDLLPKDGQGSSSPYVIADFD---GQRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYNDKR 91 (1006)
Q Consensus 15 ~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~---~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~d~ 91 (1006)
.+.|.|+|++|++|+.++..+.+||||++.+. +++++|++++++.||+|||+|.|.+..........|.|+|||++.
T Consensus 15 ~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l~~~~l~~~v~d~d~ 94 (125)
T cd08386 15 ESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKLQQRVLYLQVLDYDR 94 (125)
T ss_pred CCEEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeeeeecCCCCCccceeEEEcccCHHHhCCCEEEEEEEeCCC
Confidence 56899999999999999988999999999993 567899999999999999999998544322235679999999999
Q ss_pred CCCCCCCCCceeEEEEEeCeeeeeeCCceeEEEEce
Q 042999 92 YCNGSGRKNHFLGRVKLCGSQFARRGDEGLVYFPLE 127 (1006)
Q Consensus 92 ~~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~ 127 (1006)
+ +++++||++.++++++ ..+.....|+.|.
T Consensus 95 ~-----~~~~~iG~~~i~l~~l-~~~~~~~~W~~l~ 124 (125)
T cd08386 95 F-----SRNDPIGEVSLPLNKV-DLTEEQTFWKDLK 124 (125)
T ss_pred C-----cCCcEeeEEEEecccc-cCCCCcceEEecC
Confidence 8 7899999999999996 5566677899985
No 120
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=99.61 E-value=3.3e-15 Score=141.70 Aligned_cols=106 Identities=22% Similarity=0.407 Sum_probs=91.6
Q ss_pred ccEEEEEEEEecCCCCCCCCCCCCcEEEEEEC---CeEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEeCCC
Q 042999 15 VRKLVVEVVDARDLLPKDGQGSSSPYVIADFD---GQRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYNDKR 91 (1006)
Q Consensus 15 ~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~---~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~d~ 91 (1006)
.+.|.|+|++|++|+.++..|.+||||++.+. ...++|+++++++||+|||+|.|.+.... +....|.|+|||++.
T Consensus 15 ~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~-l~~~~l~i~V~d~~~ 93 (124)
T cd08387 15 MGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFEVPPQE-LPKRTLEVLLYDFDQ 93 (124)
T ss_pred CCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCceEcCCCCCCcccEEEEeCCHHH-hCCCEEEEEEEECCC
Confidence 56899999999999999988999999999994 45689999999999999999999987632 224689999999999
Q ss_pred CCCCCCCCCceeEEEEEeCeeeeeeCCceeEEEEce
Q 042999 92 YCNGSGRKNHFLGRVKLCGSQFARRGDEGLVYFPLE 127 (1006)
Q Consensus 92 ~~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~ 127 (1006)
+ +++++||++.++++++ ..+.....|++|+
T Consensus 94 ~-----~~~~~iG~~~i~l~~~-~~~~~~~~W~~l~ 123 (124)
T cd08387 94 F-----SRDECIGVVELPLAEV-DLSEKLDLWRKIQ 123 (124)
T ss_pred C-----CCCceeEEEEEecccc-cCCCCcceEEECc
Confidence 8 7899999999999996 4445667899985
No 121
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.61 E-value=3e-15 Score=141.33 Aligned_cols=108 Identities=32% Similarity=0.437 Sum_probs=91.5
Q ss_pred cccEEEEEEEEecCCCCCCCCCCCCcEEEEEEC---CeEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEeCC
Q 042999 14 TVRKLVVEVVDARDLLPKDGQGSSSPYVIADFD---GQRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYNDK 90 (1006)
Q Consensus 14 ~~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~---~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~d 90 (1006)
..+.|.|+|++|+||++++..|.+||||++.+. .++++|+++++ +||+|||+|.|.......+....|.|.|||++
T Consensus 14 ~~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~l~~~~L~~~V~~~~ 92 (124)
T cd08389 14 SARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTKVQRG-PNPVFNETFTFSRVEPEELNNMALRFRLYGVE 92 (124)
T ss_pred CCCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCcceeecccccC-CCCcccCEEEECCCCHHHhccCEEEEEEEECC
Confidence 356899999999999999988999999998873 46789999888 99999999999833323344678999999999
Q ss_pred CCCCCCCCCCceeEEEEEeCeeeeeeCCceeEEEEcee
Q 042999 91 RYCNGSGRKNHFLGRVKLCGSQFARRGDEGLVYFPLEK 128 (1006)
Q Consensus 91 ~~~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~ 128 (1006)
.+ +++++||++.++|+++ ..+.....|++|++
T Consensus 93 ~~-----~~~~~lG~~~i~L~~l-~~~~~~~~w~~L~p 124 (124)
T cd08389 93 RM-----RKERLIGEKVVPLSQL-NLEGETTVWLTLEP 124 (124)
T ss_pred Cc-----ccCceEEEEEEecccc-CCCCCceEEEeCCC
Confidence 98 7899999999999996 55666778999863
No 122
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.61 E-value=6.8e-15 Score=138.89 Aligned_cols=102 Identities=19% Similarity=0.182 Sum_probs=87.6
Q ss_pred cEEEEEEEeeccCCccCccCCCCCCCCCeEEEEEEC---CEEEEeecccCCCCCeeccEEEEE-EeC---CCcEEEEEEE
Q 042999 618 VGILELGILGARGLLPMKTKNGGKGSTDAYCVAKYG---KKWVRTRTITDCFDPRWNEQYTWQ-VYD---PCTVLTVGVF 690 (1006)
Q Consensus 618 ~g~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~---~~~~rT~~~~~~~nP~wne~~~~~-v~~---~~~~l~i~v~ 690 (1006)
.+.|.|+|++|+||++++ . +|.+||||.+.+. .++.||++.++ .||+|||+|.|+ +.. ....|.+.||
T Consensus 15 ~~~L~V~Vi~a~nL~~~~---~-~~~~d~yVk~~llp~~~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~l~~~~L~~~V~ 89 (124)
T cd08389 15 ARKLTVTVIRAQDIPTKD---R-GGASSWQVHLVLLPSKKQRAKTKVQRG-PNPVFNETFTFSRVEPEELNNMALRFRLY 89 (124)
T ss_pred CCEEEEEEEEecCCCchh---c-CCCCCcEEEEEEccCCcceeecccccC-CCCcccCEEEECCCCHHHhccCEEEEEEE
Confidence 468999999999999865 4 7789999998762 45779998887 999999999998 443 3568999999
Q ss_pred ECCCCCcCCCCCCCCceeEEEEEEcccccCCceEeeEEEee
Q 042999 691 DNWRMFADASEERPDYRIGKIRIRVSTLENNKVYTTSYPLL 731 (1006)
Q Consensus 691 d~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 731 (1006)
|++.++ ++++||.+.|+|+++..+.....||+|.
T Consensus 90 ~~~~~~-------~~~~lG~~~i~L~~l~~~~~~~~w~~L~ 123 (124)
T cd08389 90 GVERMR-------KERLIGEKVVPLSQLNLEGETTVWLTLE 123 (124)
T ss_pred ECCCcc-------cCceEEEEEEeccccCCCCCceEEEeCC
Confidence 999887 7999999999999998888889999984
No 123
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.61 E-value=3.5e-15 Score=139.89 Aligned_cols=103 Identities=28% Similarity=0.348 Sum_probs=91.6
Q ss_pred EEEEEEEeeccCCccCccCCCCCCCCCeEEEEEECC-EEEEeecccCCCCCeeccEEEEEEeCCCcEEEEEEEECCCCCc
Q 042999 619 GILELGILGARGLLPMKTKNGGKGSTDAYCVAKYGK-KWVRTRTITDCFDPRWNEQYTWQVYDPCTVLTVGVFDNWRMFA 697 (1006)
Q Consensus 619 g~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~~-~~~rT~~~~~~~nP~wne~~~~~v~~~~~~l~i~v~d~~~~~~ 697 (1006)
|.|+|+|++|++|++.+ . .|.+||||++.+++ ...+|+++.++.||.|||.|.|++..+...|.|+|||++..+
T Consensus 1 g~L~V~Vi~a~~L~~~d---~-~g~~DPYv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~~~~~L~v~v~d~~~~~- 75 (120)
T cd04045 1 GVLRLHIRKANDLKNLE---G-VGKIDPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVPVTSPNQKITLEVMDYEKVG- 75 (120)
T ss_pred CeEEEEEEeeECCCCcc---C-CCCcCCEEEEEECCEEeeceeEECCCcCCccCceEEEEecCCCCEEEEEEEECCCCC-
Confidence 78999999999998854 4 78999999999976 568999999999999999999999888889999999999887
Q ss_pred CCCCCCCCceeEEEEEEcccccCCceEeeEEEeeee
Q 042999 698 DASEERPDYRIGKIRIRVSTLENNKVYTTSYPLLVL 733 (1006)
Q Consensus 698 ~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~ 733 (1006)
+|++||.+.+++.++..+ ..+.||-|.+.
T Consensus 76 ------~d~~IG~~~~~l~~l~~~-~~~~~~~~~~~ 104 (120)
T cd04045 76 ------KDRSLGSVEINVSDLIKK-NEDGKYVEYDD 104 (120)
T ss_pred ------CCCeeeEEEEeHHHhhCC-CCCceEEecCC
Confidence 789999999999999877 44788888764
No 124
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=99.61 E-value=6.9e-15 Score=139.47 Aligned_cols=105 Identities=18% Similarity=0.220 Sum_probs=90.3
Q ss_pred CcEEEEEEEeeccCCccCccCCCCCCCCCeEEEEEEC---CEEEEeecccCCCCCeeccEEEEEEeCC---CcEEEEEEE
Q 042999 617 PVGILELGILGARGLLPMKTKNGGKGSTDAYCVAKYG---KKWVRTRTITDCFDPRWNEQYTWQVYDP---CTVLTVGVF 690 (1006)
Q Consensus 617 ~~g~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~---~~~~rT~~~~~~~nP~wne~~~~~v~~~---~~~l~i~v~ 690 (1006)
..+.|.|+|++|+||++++. . .|.+||||++.+. .+..+|+++++++||+|||.|.|.+... ...|.|.||
T Consensus 12 ~~~~L~V~v~~a~~L~~~~~--~-~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f~i~~~~l~~~~l~i~v~ 88 (123)
T cd08390 12 EEEQLTVSLIKARNLPPRTK--D-VAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSFKELQRRTLRLSVY 88 (123)
T ss_pred CCCEEEEEEEEecCCCCccC--C-CCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEEEcCHHHhcccEEEEEEE
Confidence 45789999999999988641 3 6789999999983 4567999999999999999999998652 458999999
Q ss_pred ECCCCCcCCCCCCCCceeEEEEEEcccccCCceEeeEEEee
Q 042999 691 DNWRMFADASEERPDYRIGKIRIRVSTLENNKVYTTSYPLL 731 (1006)
Q Consensus 691 d~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 731 (1006)
|++..+ ++++||++.++|+++........|++|.
T Consensus 89 d~~~~~-------~~~~iG~~~i~L~~l~~~~~~~~w~~L~ 122 (123)
T cd08390 89 DVDRFS-------RHCIIGHVLFPLKDLDLVKGGVVWRDLE 122 (123)
T ss_pred ECCcCC-------CCcEEEEEEEeccceecCCCceEEEeCC
Confidence 999876 7899999999999998877778999984
No 125
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=99.61 E-value=3.3e-15 Score=139.88 Aligned_cols=104 Identities=18% Similarity=0.187 Sum_probs=88.8
Q ss_pred CCcEEEEEEEeeccCCccCccCCCCCCCCCeEEEEEEC------CEEEEeecccCCCCCeeccEEEEEEeC---CCcEEE
Q 042999 616 PPVGILELGILGARGLLPMKTKNGGKGSTDAYCVAKYG------KKWVRTRTITDCFDPRWNEQYTWQVYD---PCTVLT 686 (1006)
Q Consensus 616 ~~~g~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~------~~~~rT~~~~~~~nP~wne~~~~~v~~---~~~~l~ 686 (1006)
+..|.|.|+|++|+||++++ . .|.+||||++.+- ..+.||+++++++||+|||+|.|++.. ....|.
T Consensus 11 ~~~~~L~V~V~~arnL~~~~---~-~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~~~~L~ 86 (124)
T cd08680 11 SGDSSLVISVEQLRNLSALS---I-PENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTKLYQKTLQ 86 (124)
T ss_pred CCCCEEEEEEeEecCCcccc---c-CCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHHHhhcCEEE
Confidence 35678999999999999864 3 7789999999972 247899999999999999999999865 456899
Q ss_pred EEEEECCCCCcCCCCCCCCceeEEEEEEcccccCC-ceEeeEEEe
Q 042999 687 VGVFDNWRMFADASEERPDYRIGKIRIRVSTLENN-KVYTTSYPL 730 (1006)
Q Consensus 687 i~v~d~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~-~~~~~~~~L 730 (1006)
|+|||.+.++ ++++||.+.|+|.++... .....||+|
T Consensus 87 ~~V~~~~~~~-------~~~~lG~~~i~L~~~~~~~~~~~~Wy~l 124 (124)
T cd08680 87 VDVCSVGPDQ-------QEECLGGAQISLADFESSEEMSTKWYNL 124 (124)
T ss_pred EEEEeCCCCC-------ceeEEEEEEEEhhhccCCCccccccccC
Confidence 9999999876 899999999999999654 346789976
No 126
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=99.61 E-value=4.2e-15 Score=141.03 Aligned_cols=107 Identities=28% Similarity=0.409 Sum_probs=91.8
Q ss_pred cccEEEEEEEEecCCCCCCCCCCCCcEEEEEEC---CeEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEeCC
Q 042999 14 TVRKLVVEVVDARDLLPKDGQGSSSPYVIADFD---GQRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYNDK 90 (1006)
Q Consensus 14 ~~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~---~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~d 90 (1006)
..+.|.|+|++|++|+.++..|.+||||++.+. ...++|+++++++||+|||+|.|.+.... +....|.|+|||++
T Consensus 14 ~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~-l~~~~l~~~V~d~d 92 (124)
T cd08385 14 QSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYSE-LGNKTLVFSVYDFD 92 (124)
T ss_pred CCCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEeCCHHH-hCCCEEEEEEEeCC
Confidence 356899999999999999988999999999985 34689999999999999999999986521 22468999999999
Q ss_pred CCCCCCCCCCceeEEEEEeCeeeeeeCCceeEEEEce
Q 042999 91 RYCNGSGRKNHFLGRVKLCGSQFARRGDEGLVYFPLE 127 (1006)
Q Consensus 91 ~~~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~ 127 (1006)
.+ +++++||++.++++++ ..+....+|++|.
T Consensus 93 ~~-----~~~~~lG~~~i~l~~~-~~~~~~~~W~~l~ 123 (124)
T cd08385 93 RF-----SKHDLIGEVRVPLLTV-DLGHVTEEWRDLE 123 (124)
T ss_pred CC-----CCCceeEEEEEecCcc-cCCCCcceEEEcc
Confidence 98 7899999999999996 4466677899985
No 127
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=99.60 E-value=8e-15 Score=137.72 Aligned_cols=112 Identities=26% Similarity=0.428 Sum_probs=88.4
Q ss_pred EEEEEeeccCCccCccCCCCCCCCCeEEEEEECCE-EEEeecccCCCCCeeccEEEEEEeC---CCcEEEEEEEECCCCC
Q 042999 621 LELGILGARGLLPMKTKNGGKGSTDAYCVAKYGKK-WVRTRTITDCFDPRWNEQYTWQVYD---PCTVLTVGVFDNWRMF 696 (1006)
Q Consensus 621 L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~~~-~~rT~~~~~~~nP~wne~~~~~v~~---~~~~l~i~v~d~~~~~ 696 (1006)
|+|+|++|+||+. .|.+||||+++++++ ..||+++++ .||.|||+|.|.+.. ....|.|.+||.+...
T Consensus 2 L~v~vi~a~~l~~-------~~~~dpyv~v~~~~~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~ 73 (117)
T cd08383 2 LRLRILEAKNLPS-------KGTRDPYCTVSLDQVEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKD 73 (117)
T ss_pred eEEEEEEecCCCc-------CCCCCceEEEEECCEEeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecccCC
Confidence 7899999999976 257999999999875 579999999 999999999999977 3456888888877544
Q ss_pred cCCCCCCCCceeEEEEEEcccccCCceEeeEEEeeeeccCCcccccEEEEEEEE
Q 042999 697 ADASEERPDYRIGKIRIRVSTLENNKVYTTSYPLLVLLRTGLKKMGEIELAVRF 750 (1006)
Q Consensus 697 ~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~l~l~~~~ 750 (1006)
++..+|++.|. .+..+...+.||+|......+ ...|+|+|+++|
T Consensus 74 -------~~~~~g~v~l~--~~~~~~~~~~w~~L~~~~~~~-~~~G~l~l~~~~ 117 (117)
T cd08383 74 -------RDIVIGKVALS--KLDLGQGKDEWFPLTPVDPDS-EVQGSVRLRARY 117 (117)
T ss_pred -------CeeEEEEEEec--CcCCCCcceeEEECccCCCCC-CcCceEEEEEEC
Confidence 56677775554 455566678999998765433 345999999986
No 128
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=99.60 E-value=3.9e-15 Score=142.92 Aligned_cols=103 Identities=19% Similarity=0.263 Sum_probs=91.2
Q ss_pred EEEEEeeccCCccCccCCCCCCCCCeEEEEEEC----CEEEEeecccCCCCCeeccEEEEEEeCC---------------
Q 042999 621 LELGILGARGLLPMKTKNGGKGSTDAYCVAKYG----KKWVRTRTITDCFDPRWNEQYTWQVYDP--------------- 681 (1006)
Q Consensus 621 L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~----~~~~rT~~~~~~~nP~wne~~~~~v~~~--------------- 681 (1006)
|+|.|++|++|+.+ . .|.+||||++.++ +...||+++.++.||.|||+|.|++...
T Consensus 1 L~V~Vi~A~~L~~~----~-~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~ 75 (137)
T cd08675 1 LSVRVLECRDLALK----S-NGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDL 75 (137)
T ss_pred CEEEEEEccCCCcc----c-CCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccc
Confidence 57999999999875 2 7789999999998 7889999999999999999999998775
Q ss_pred -CcEEEEEEEECCCCCcCCCCCCCCceeEEEEEEcccccCCceEeeEEEeeeecc
Q 042999 682 -CTVLTVGVFDNWRMFADASEERPDYRIGKIRIRVSTLENNKVYTTSYPLLVLLR 735 (1006)
Q Consensus 682 -~~~l~i~v~d~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~ 735 (1006)
...|.|+|||++..+ ++++||++.|++.++........||+|.....
T Consensus 76 ~~~~l~i~V~d~~~~~-------~~~~IG~~~i~l~~l~~~~~~~~W~~L~~~~~ 123 (137)
T cd08675 76 EKSELRVELWHASMVS-------GDDFLGEVRIPLQGLQQAGSHQAWYFLQPREA 123 (137)
T ss_pred cccEEEEEEEcCCcCc-------CCcEEEEEEEehhhccCCCcccceEecCCcCC
Confidence 358999999999876 79999999999999987777789999987653
No 129
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.60 E-value=5e-15 Score=137.37 Aligned_cols=105 Identities=26% Similarity=0.342 Sum_probs=88.8
Q ss_pred ccEEEEEEEEecCCCCCCCCCCCCcEEEEEECCeEEEeeCcCCCCCCeeeeEEEEEeeCCC-CCCCceEEEEEEeCCCCC
Q 042999 15 VRKLVVEVVDARDLLPKDGQGSSSPYVIADFDGQRKRTSTKFRDLNPVWNEPLEFIVSDPK-NMDCEELEIEVYNDKRYC 93 (1006)
Q Consensus 15 ~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~-~~~~~~L~i~V~d~d~~~ 93 (1006)
...|+|+|++|++|. .|.+||||++++++++++|++++++.||.|||+|.|.+..+. .+.+..|.|+|||++..
T Consensus 3 ~~~l~V~v~~a~~L~----~~~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~~- 77 (111)
T cd04011 3 DFQVRVRVIEARQLV----GGNIDPVVKVEVGGQKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRSL- 77 (111)
T ss_pred cEEEEEEEEEcccCC----CCCCCCEEEEEECCEeeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCccc-
Confidence 568999999999997 578999999999999999999999999999999999976532 12245799999999998
Q ss_pred CCCCCCCceeEEEEEeCeeeeeeCC--ceeEEEEcee
Q 042999 94 NGSGRKNHFLGRVKLCGSQFARRGD--EGLVYFPLEK 128 (1006)
Q Consensus 94 ~~~~~~d~~lG~~~v~l~~l~~~~~--~~~~w~~L~~ 128 (1006)
+++++||++.++++++..... ....|++|..
T Consensus 78 ----~~~~~iG~~~i~l~~v~~~~~~~~~~~w~~L~~ 110 (111)
T cd04011 78 ----RSDTLIGSFKLDVGTVYDQPDHAFLRKWLLLTD 110 (111)
T ss_pred ----ccCCccEEEEECCccccCCCCCcceEEEEEeeC
Confidence 689999999999999754432 2458999864
No 130
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.59 E-value=6.1e-15 Score=142.55 Aligned_cols=106 Identities=29% Similarity=0.476 Sum_probs=89.4
Q ss_pred EEEEEEEEecCCCCCCCC--------------CCCCcEEEEEECCeEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceE
Q 042999 17 KLVVEVVDARDLLPKDGQ--------------GSSSPYVIADFDGQRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEEL 82 (1006)
Q Consensus 17 ~L~V~v~~a~~L~~~~~~--------------g~~dPyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L 82 (1006)
.|.|+|++|++|+.+|.. +.+||||+|.+++++.+|+++++++||+|||+|.|.+..+.. ...|
T Consensus 1 ~~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g~~~kT~v~~~t~nPvWNE~f~f~v~~p~~--~~~l 78 (151)
T cd04018 1 RFIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAGQKVKTSVKKNSYNPEWNEQIVFPEMFPPL--CERI 78 (151)
T ss_pred CeEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECCEeeecceEcCCCCCCcceEEEEEeeCCCc--CCEE
Confidence 378999999999998854 368999999999999999999999999999999999765321 4689
Q ss_pred EEEEEeCCCCCCCCCCCCceeEEEEEeCeeeeeeCCc------eeEEEEceec
Q 042999 83 EIEVYNDKRYCNGSGRKNHFLGRVKLCGSQFARRGDE------GLVYFPLEKK 129 (1006)
Q Consensus 83 ~i~V~d~d~~~~~~~~~d~~lG~~~v~l~~l~~~~~~------~~~w~~L~~~ 129 (1006)
.|+|||+|.. ++|++||++.+++.++...+.. ...|+.|...
T Consensus 79 ~~~v~D~d~~-----~~dd~iG~~~l~l~~l~~~~~~~~lp~~~p~W~~lyg~ 126 (151)
T cd04018 79 KIQIRDWDRV-----GNDDVIGTHFIDLSKISNSGDEGFLPTFGPSFVNLYGS 126 (151)
T ss_pred EEEEEECCCC-----CCCCEEEEEEEeHHHhccCCccccCCccCceEEEeecC
Confidence 9999999998 7999999999999997554432 2378888654
No 131
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=99.58 E-value=6.9e-15 Score=145.14 Aligned_cols=109 Identities=22% Similarity=0.368 Sum_probs=91.0
Q ss_pred cccEEEEEEEEecCCCCCCCCCCCCcEEEEEEC-----CeEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEe
Q 042999 14 TVRKLVVEVVDARDLLPKDGQGSSSPYVIADFD-----GQRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYN 88 (1006)
Q Consensus 14 ~~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~-----~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d 88 (1006)
..+.|.|+|++|+||+.++..|.+||||++++. .++++|++++++.||+|||+|.|.+.....+.+..|.|+|||
T Consensus 25 ~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i~V~d 104 (162)
T cd04020 25 STGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTVWD 104 (162)
T ss_pred CCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCCCEEEEecCCHHHhCCCEEEEEEEe
Confidence 468899999999999999988999999999983 356899999999999999999998644333335689999999
Q ss_pred CCCCCCCCCCCCceeEEEEEeCeeeeeeCCceeEEEEcee
Q 042999 89 DKRYCNGSGRKNHFLGRVKLCGSQFARRGDEGLVYFPLEK 128 (1006)
Q Consensus 89 ~d~~~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~ 128 (1006)
++.+ +++++||++.++++++... .....|+.|..
T Consensus 105 ~d~~-----~~d~~lG~v~i~l~~~~~~-~~~~~w~~~~~ 138 (162)
T cd04020 105 HDKL-----SSNDFLGGVRLGLGTGKSY-GQAVDWMDSTG 138 (162)
T ss_pred CCCC-----CCCceEEEEEEeCCccccC-CCccccccCCh
Confidence 9998 7899999999999996433 34567887753
No 132
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.58 E-value=1.6e-14 Score=135.23 Aligned_cols=112 Identities=29% Similarity=0.375 Sum_probs=95.0
Q ss_pred EEEEEeeccCCccCccCCCCCCCCCeEEEEEECC-EEEEeecccCCCCCeeccEEEEEEeC-CCcEEEEEEEECCCCCcC
Q 042999 621 LELGILGARGLLPMKTKNGGKGSTDAYCVAKYGK-KWVRTRTITDCFDPRWNEQYTWQVYD-PCTVLTVGVFDNWRMFAD 698 (1006)
Q Consensus 621 L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~~-~~~rT~~~~~~~nP~wne~~~~~v~~-~~~~l~i~v~d~~~~~~~ 698 (1006)
|+|+|++|++|++.+ . .|.+||||++.+++ +..+|+++.++.||.|||.|.|.+.. ....|.|+|||++..+
T Consensus 1 l~v~vi~a~~L~~~~---~-~~~~dpyv~v~~~~~~~~~T~v~~~~~~P~Wne~f~~~~~~~~~~~l~~~v~d~~~~~-- 74 (115)
T cd04040 1 LTVDVISAENLPSAD---R-NGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPVPSRVRAVLKVEVYDWDRGG-- 74 (115)
T ss_pred CEEEEEeeeCCCCCC---C-CCCCCCeEEEEECCCcceeeceecCCCCCcccccEEEEeccCCCCEEEEEEEeCCCCC--
Confidence 579999999998854 3 77899999999964 56799999999999999999999987 5678999999999876
Q ss_pred CCCCCCCceeEEEEEEcccccCCceEeeEEEeeeeccCCcccccEEEE
Q 042999 699 ASEERPDYRIGKIRIRVSTLENNKVYTTSYPLLVLLRTGLKKMGEIEL 746 (1006)
Q Consensus 699 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~l~l 746 (1006)
++++||++.+++.++..+.....|++|... |..+.|.|.+
T Consensus 75 -----~~~~iG~~~~~l~~l~~~~~~~~~~~L~~~---g~~~~~~~~~ 114 (115)
T cd04040 75 -----KDDLLGSAYIDLSDLEPEETTELTLPLDGQ---GGGKLGAVFL 114 (115)
T ss_pred -----CCCceEEEEEEHHHcCCCCcEEEEEECcCC---CCccCceEEc
Confidence 799999999999999988888999999653 3334476654
No 133
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=99.58 E-value=9.1e-15 Score=141.47 Aligned_cols=100 Identities=25% Similarity=0.467 Sum_probs=86.4
Q ss_pred CCCcEEEEEEEeeccCCccCccCCCCCCCCCeEEEEEECC-----------------------------EEEEeecccCC
Q 042999 615 KPPVGILELGILGARGLLPMKTKNGGKGSTDAYCVAKYGK-----------------------------KWVRTRTITDC 665 (1006)
Q Consensus 615 ~~~~g~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~~-----------------------------~~~rT~~~~~~ 665 (1006)
.++++.|.|+|++|+||+++| . .|.+||||++.+++ ...+|+++.++
T Consensus 24 ~~~~~~L~V~vi~a~~L~~~d---~-~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~t 99 (153)
T cd08676 24 EPPIFVLKVTVIEAKGLLAKD---V-NGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQT 99 (153)
T ss_pred CCCeEEEEEEEEeccCCcccC---C-CCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCC
Confidence 478999999999999999865 4 78999999999853 23689999999
Q ss_pred CCCeeccEEEEEEeCC-CcEEEEEEEECCCCCcCCCCCCCCceeEEEEEEcccccCCceEeeEEEe
Q 042999 666 FDPRWNEQYTWQVYDP-CTVLTVGVFDNWRMFADASEERPDYRIGKIRIRVSTLENNKVYTTSYPL 730 (1006)
Q Consensus 666 ~nP~wne~~~~~v~~~-~~~l~i~v~d~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L 730 (1006)
+||.|||.|.|.+.+. ...|.|+|||++ |++||.+.++++++... ..+.||+|
T Consensus 100 lnP~WnE~F~f~v~~~~~~~L~i~V~D~d-----------d~~IG~v~i~l~~l~~~-~~d~W~~L 153 (153)
T cd08676 100 LNPVWNETFRFEVEDVSNDQLHLDIWDHD-----------DDFLGCVNIPLKDLPSC-GLDSWFKL 153 (153)
T ss_pred CCCccccEEEEEeccCCCCEEEEEEEecC-----------CCeEEEEEEEHHHhCCC-CCCCeEeC
Confidence 9999999999999774 568999999985 56999999999999843 35899987
No 134
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=99.57 E-value=2.8e-14 Score=135.02 Aligned_cols=117 Identities=25% Similarity=0.368 Sum_probs=96.5
Q ss_pred cEEEEEEEEecCCCCCCCCCCCCcEEEEEECCe-EEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEeCCCCCC
Q 042999 16 RKLVVEVVDARDLLPKDGQGSSSPYVIADFDGQ-RKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYNDKRYCN 94 (1006)
Q Consensus 16 ~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~~-~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~d~~~~ 94 (1006)
..|.|+|++|+ |...+..+.+||||+++++++ .++|+++++++||.|||+|.|.+.. ...|.|+|||++..
T Consensus 2 ~~L~V~i~~a~-l~~~~~~~~~dPyv~v~~~~~~~~kT~v~~~t~~P~Wne~f~~~~~~-----~~~l~~~V~d~~~~-- 73 (125)
T cd04021 2 SQLQITVESAK-LKSNSKSFKPDPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTVLVTP-----QSTLEFKVWSHHTL-- 73 (125)
T ss_pred ceEEEEEEeeE-CCCCCcCCCCCeEEEEEECCcccEEeeeeCCCCCCccccEEEEEeCC-----CCEEEEEEEeCCCC--
Confidence 36899999998 555555788999999999887 7999999999999999999999864 46899999999998
Q ss_pred CCCCCCceeEEEEEeCeeeeeeCCc----eeEEEEceecCC-ceeeeEEEEEEE
Q 042999 95 GSGRKNHFLGRVKLCGSQFARRGDE----GLVYFPLEKKSV-FSWIRGEIGLRI 143 (1006)
Q Consensus 95 ~~~~~d~~lG~~~v~l~~l~~~~~~----~~~w~~L~~~~~-~~~~~G~i~l~~ 143 (1006)
+++++||++.+++.+++..... ...|++|.+.+. .....|++.+.+
T Consensus 74 ---~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 124 (125)
T cd04021 74 ---KADVLLGEASLDLSDILKNHNGKLENVKLTLNLSSENKGSSVKVGELTVIL 124 (125)
T ss_pred ---CCCcEEEEEEEEHHHhHhhcCCCccceEEEEEEEccCCCcceeeeeEEEEe
Confidence 7899999999999997644321 124888886553 346689998875
No 135
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=99.57 E-value=1.1e-14 Score=138.46 Aligned_cols=118 Identities=21% Similarity=0.346 Sum_probs=98.0
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEECC-eEEEeeCcC-CCCCCeeeeEEEEEeeCCCC-CCCceEEEEEEeCCCCC
Q 042999 17 KLVVEVVDARDLLPKDGQGSSSPYVIADFDG-QRKRTSTKF-RDLNPVWNEPLEFIVSDPKN-MDCEELEIEVYNDKRYC 93 (1006)
Q Consensus 17 ~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~-~~~kT~~~~-~t~nP~wne~f~f~~~~~~~-~~~~~L~i~V~d~d~~~ 93 (1006)
.|.|+|++|++|+..+..+.+||||++++++ ++++|++.. ++.||.|||.|.|.+..... .....|.|+|||++.+
T Consensus 1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~~- 79 (125)
T cd04051 1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERPS- 79 (125)
T ss_pred CEEEEEEEcccCCCCCcccCCceEEEEEECCCcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCCC-
Confidence 3889999999999998889999999999988 889999975 68999999999999877520 1146899999999997
Q ss_pred CCCCCCCceeEEEEEeCeeeeeeCCc----eeEEEEceecCCceeeeEEEEE
Q 042999 94 NGSGRKNHFLGRVKLCGSQFARRGDE----GLVYFPLEKKSVFSWIRGEIGL 141 (1006)
Q Consensus 94 ~~~~~~d~~lG~~~v~l~~l~~~~~~----~~~w~~L~~~~~~~~~~G~i~l 141 (1006)
+++++||.+.+++.++...... ...||+|.+.. ++..|+|++
T Consensus 80 ----~~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~--g~~~G~~~~ 125 (125)
T cd04051 80 ----LGDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPS--GKPQGVLNF 125 (125)
T ss_pred ----CCCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCC--CCcCeEEeC
Confidence 6899999999999998655442 35899998754 455888864
No 136
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=99.57 E-value=1.6e-14 Score=137.87 Aligned_cols=109 Identities=31% Similarity=0.460 Sum_probs=91.0
Q ss_pred cccEEEEEEEEecCCCCCCCCCCCCcEEEEEEC-----CeEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEe
Q 042999 14 TVRKLVVEVVDARDLLPKDGQGSSSPYVIADFD-----GQRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYN 88 (1006)
Q Consensus 14 ~~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~-----~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d 88 (1006)
..+.|.|+|++|+||+.++..+.+||||++.+. ..+++|++++++.||+|||+|.|.+.... +....|.|.|||
T Consensus 14 ~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~-l~~~~l~i~v~~ 92 (127)
T cd04030 14 QRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEE-LKRRTLDVAVKN 92 (127)
T ss_pred CCCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHHH-hcCCEEEEEEEE
Confidence 357899999999999999988999999999995 45689999999999999999999986532 225689999999
Q ss_pred CCCCCCCCCCCCceeEEEEEeCeeeeeeCCceeEEEEce
Q 042999 89 DKRYCNGSGRKNHFLGRVKLCGSQFARRGDEGLVYFPLE 127 (1006)
Q Consensus 89 ~d~~~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~ 127 (1006)
++.+. .+++++||++.+++.++ ..+.....||+|+
T Consensus 93 ~~~~~---~~~~~~iG~~~i~l~~l-~~~~~~~~W~~L~ 127 (127)
T cd04030 93 SKSFL---SREKKLLGQVLIDLSDL-DLSKGFTQWYDLT 127 (127)
T ss_pred CCccc---CCCCceEEEEEEecccc-cccCCccceEECc
Confidence 98741 04789999999999996 4445567899884
No 137
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=99.57 E-value=1.5e-14 Score=137.10 Aligned_cols=106 Identities=27% Similarity=0.516 Sum_probs=90.1
Q ss_pred cccEEEEEEEEecCCCCCC-CCCCCCcEEEEEEC-----CeEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEE
Q 042999 14 TVRKLVVEVVDARDLLPKD-GQGSSSPYVIADFD-----GQRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVY 87 (1006)
Q Consensus 14 ~~~~L~V~v~~a~~L~~~~-~~g~~dPyv~v~~~-----~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~ 87 (1006)
..+.|.|+|++|+||+.++ ..+.+||||++.+. ..+++|++++++.||+|||+|.|.+.... +....|.|+||
T Consensus 12 ~~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~~-l~~~~l~i~v~ 90 (123)
T cd08521 12 KTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKSQ-LETRTLQLSVW 90 (123)
T ss_pred CCCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCHHH-hCCCEEEEEEE
Confidence 4578999999999999988 67899999999984 14689999999999999999999987632 22568999999
Q ss_pred eCCCCCCCCCCCCceeEEEEEeCeeeeeeCCceeEEEEc
Q 042999 88 NDKRYCNGSGRKNHFLGRVKLCGSQFARRGDEGLVYFPL 126 (1006)
Q Consensus 88 d~d~~~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L 126 (1006)
|++.. +++++||++.++++++ ..+.....||+|
T Consensus 91 d~~~~-----~~~~~iG~~~i~l~~l-~~~~~~~~w~~l 123 (123)
T cd08521 91 HHDRF-----GRNTFLGEVEIPLDSW-DLDSQQSEWYPL 123 (123)
T ss_pred eCCCC-----cCCceeeEEEEecccc-cccCCCccEEEC
Confidence 99988 7899999999999996 455556789987
No 138
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=99.57 E-value=2.4e-14 Score=135.84 Aligned_cols=109 Identities=21% Similarity=0.306 Sum_probs=93.8
Q ss_pred cEEEEEEEEecCCCCCCCCCCCCcEEEEEECCeEEEeeCcCC-CCCCeeeeEEEEEeeCCCCCCCceEEEEEEeCCCCCC
Q 042999 16 RKLVVEVVDARDLLPKDGQGSSSPYVIADFDGQRKRTSTKFR-DLNPVWNEPLEFIVSDPKNMDCEELEIEVYNDKRYCN 94 (1006)
Q Consensus 16 ~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~~~~kT~~~~~-t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~d~~~~ 94 (1006)
|.|.|+|++|++|+..+..+.+||||+++++++.++|++..+ +.||.|||+|.|.+..........|.|+|||.+.+
T Consensus 1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~-- 78 (124)
T cd04049 1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDNF-- 78 (124)
T ss_pred CeEEEEEEecCCCCCCCCCCCcCceEEEEECCEeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECccC--
Confidence 579999999999999888889999999999998899999874 89999999999999875322246899999999998
Q ss_pred CCCCCCceeEEEEEeCeeeeeeCCceeEEEEceecC
Q 042999 95 GSGRKNHFLGRVKLCGSQFARRGDEGLVYFPLEKKS 130 (1006)
Q Consensus 95 ~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~ 130 (1006)
+++++||++.+++.+++. +.....|+.|.+.+
T Consensus 79 ---~~d~~iG~~~i~l~~l~~-~~~~~~~~~l~p~~ 110 (124)
T cd04049 79 ---SDDDFIGEATIHLKGLFE-EGVEPGTAELVPAK 110 (124)
T ss_pred ---CCCCeEEEEEEEhHHhhh-CCCCcCceEeeccc
Confidence 789999999999999755 34456799998754
No 139
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=99.57 E-value=2e-14 Score=137.77 Aligned_cols=92 Identities=21% Similarity=0.259 Sum_probs=80.7
Q ss_pred cEEEEEEEeeccCCccCccCCCCCCCCCeEEEEEEC-------CEEEEeecccCCCCCeeccEEEEEEeCC-----CcEE
Q 042999 618 VGILELGILGARGLLPMKTKNGGKGSTDAYCVAKYG-------KKWVRTRTITDCFDPRWNEQYTWQVYDP-----CTVL 685 (1006)
Q Consensus 618 ~g~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~-------~~~~rT~~~~~~~nP~wne~~~~~v~~~-----~~~l 685 (1006)
.+.|.|+|++|++|++++ . .|.+||||+|.+. ....||+++++|+||+|||+|.|++... ...|
T Consensus 15 ~~~L~V~Vi~A~~L~~~~---~-~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~~~~~~~~l 90 (133)
T cd04009 15 EQSLRVEILNARNLLPLD---S-NGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPEQCSVEGALL 90 (133)
T ss_pred CCEEEEEEEEeeCCCCcC---C-CCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEechhhcccCCCEE
Confidence 468999999999998864 4 7889999999985 3478999999999999999999998752 4589
Q ss_pred EEEEEECCCCCcCCCCCCCCceeEEEEEEcccccC
Q 042999 686 TVGVFDNWRMFADASEERPDYRIGKIRIRVSTLEN 720 (1006)
Q Consensus 686 ~i~v~d~~~~~~~~~~~~~d~~lG~~~i~l~~l~~ 720 (1006)
.|+|||++..+ +|++||++.++|.++..
T Consensus 91 ~~~V~d~d~~~-------~d~~iG~~~i~l~~l~~ 118 (133)
T cd04009 91 LFTVKDYDLLG-------SNDFEGEAFLPLNDIPG 118 (133)
T ss_pred EEEEEecCCCC-------CCcEeEEEEEeHHHCCc
Confidence 99999999876 79999999999999874
No 140
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=99.56 E-value=4e-14 Score=133.96 Aligned_cols=116 Identities=20% Similarity=0.304 Sum_probs=92.9
Q ss_pred EEEEEEeeccCCccCccCCCCCCCCCeEEEEEECCE-EEEeecccCCCCCeeccEEEEEEeCCCcEEEEEEEECCCCCcC
Q 042999 620 ILELGILGARGLLPMKTKNGGKGSTDAYCVAKYGKK-WVRTRTITDCFDPRWNEQYTWQVYDPCTVLTVGVFDNWRMFAD 698 (1006)
Q Consensus 620 ~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~~~-~~rT~~~~~~~nP~wne~~~~~v~~~~~~l~i~v~d~~~~~~~ 698 (1006)
.|.|+|++|+ |... +. .+.+||||+++++++ ..+|+++.+++||.|||.|.|.+. ....|.|+|||++..+
T Consensus 3 ~L~V~i~~a~-l~~~---~~-~~~~dPyv~v~~~~~~~~kT~v~~~t~~P~Wne~f~~~~~-~~~~l~~~V~d~~~~~-- 74 (125)
T cd04021 3 QLQITVESAK-LKSN---SK-SFKPDPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTVLVT-PQSTLEFKVWSHHTLK-- 74 (125)
T ss_pred eEEEEEEeeE-CCCC---Cc-CCCCCeEEEEEECCcccEEeeeeCCCCCCccccEEEEEeC-CCCEEEEEEEeCCCCC--
Confidence 6899999998 5443 33 678999999999887 889999999999999999999975 4578999999999876
Q ss_pred CCCCCCCceeEEEEEEcccccCCc---e--EeeEEEeeeeccCCcccccEEEEEE
Q 042999 699 ASEERPDYRIGKIRIRVSTLENNK---V--YTTSYPLLVLLRTGLKKMGEIELAV 748 (1006)
Q Consensus 699 ~~~~~~d~~lG~~~i~l~~l~~~~---~--~~~~~~L~~~~~~g~~~~G~l~l~~ 748 (1006)
.|++||++.++|.++..+. . ...|++|........+..|+|++.+
T Consensus 75 -----~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 124 (125)
T cd04021 75 -----ADVLLGEASLDLSDILKNHNGKLENVKLTLNLSSENKGSSVKVGELTVIL 124 (125)
T ss_pred -----CCcEEEEEEEEHHHhHhhcCCCccceEEEEEEEccCCCcceeeeeEEEEe
Confidence 7999999999999987532 1 3458888754321223459998865
No 141
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=99.56 E-value=2.6e-14 Score=134.00 Aligned_cols=93 Identities=27% Similarity=0.365 Sum_probs=81.4
Q ss_pred CcccEEEEEEEEecCCCCCCCCCCCCcEEEEEECCeEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEeCCCC
Q 042999 13 FTVRKLVVEVVDARDLLPKDGQGSSSPYVIADFDGQRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYNDKRY 92 (1006)
Q Consensus 13 ~~~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~d~~ 92 (1006)
...+.|+|+|++|++|+ .+..|.+||||+|++++++++|+++++++||+|||+|.|...... ....|.|+|||++..
T Consensus 25 ~~~~~L~V~V~~A~~L~-~d~~g~~DPYVkV~~~~~~~kT~vi~~t~nPvWNE~F~f~~~~~~--~~~~L~v~V~D~d~~ 101 (127)
T cd04032 25 RGLATLTVTVLRATGLW-GDYFTSTDGYVKVFFGGQEKRTEVIWNNNNPRWNATFDFGSVELS--PGGKLRFEVWDRDNG 101 (127)
T ss_pred CCcEEEEEEEEECCCCC-cCcCCCCCeEEEEEECCccccCceecCCCCCcCCCEEEEecccCC--CCCEEEEEEEeCCCC
Confidence 34589999999999997 466788999999999999999999999999999999999753321 156899999999998
Q ss_pred CCCCCCCCceeEEEEEeCeee
Q 042999 93 CNGSGRKNHFLGRVKLCGSQF 113 (1006)
Q Consensus 93 ~~~~~~~d~~lG~~~v~l~~l 113 (1006)
++|++||++.+++...
T Consensus 102 -----s~dd~IG~~~i~l~~~ 117 (127)
T cd04032 102 -----WDDDLLGTCSVVPEAG 117 (127)
T ss_pred -----CCCCeeEEEEEEecCC
Confidence 7999999999999874
No 142
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=99.56 E-value=1.8e-14 Score=138.73 Aligned_cols=91 Identities=31% Similarity=0.535 Sum_probs=84.1
Q ss_pred cEEEEEEEEecCCCCCCCCCCCCcEEEEEECCeEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEeCCCCCCC
Q 042999 16 RKLVVEVVDARDLLPKDGQGSSSPYVIADFDGQRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYNDKRYCNG 95 (1006)
Q Consensus 16 ~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~d~~~~~ 95 (1006)
|.|+|+|++|++|+..+. +.+||||++.+++++++|++++++.||+|||+|.|.+..+ ...|.|+|||++.+
T Consensus 2 G~L~V~Vi~a~nL~~~d~-~~sDPYV~v~~g~~~~kT~vvk~t~nP~WnE~f~f~i~~~----~~~l~~~V~D~d~~--- 73 (145)
T cd04038 2 GLLKVRVVRGTNLAVRDF-TSSDPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLSVPNP----MAPLKLEVFDKDTF--- 73 (145)
T ss_pred eEEEEEEEeeECCCCCCC-CCcCcEEEEEECCEEEEeeeEcCCCCCeecccEEEEecCC----CCEEEEEEEECCCC---
Confidence 689999999999998887 8999999999999999999999999999999999999875 56899999999998
Q ss_pred CCCCCceeEEEEEeCeeeeee
Q 042999 96 SGRKNHFLGRVKLCGSQFARR 116 (1006)
Q Consensus 96 ~~~~d~~lG~~~v~l~~l~~~ 116 (1006)
++|++||.+.+++.+++..
T Consensus 74 --~~dd~iG~a~i~l~~l~~~ 92 (145)
T cd04038 74 --SKDDSMGEAEIDLEPLVEA 92 (145)
T ss_pred --CCCCEEEEEEEEHHHhhhh
Confidence 7899999999999997543
No 143
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=99.56 E-value=2.6e-14 Score=135.51 Aligned_cols=108 Identities=23% Similarity=0.371 Sum_probs=90.7
Q ss_pred cccEEEEEEEEecCCCCCC-CCCCCCcEEEEEEC---CeEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEeC
Q 042999 14 TVRKLVVEVVDARDLLPKD-GQGSSSPYVIADFD---GQRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYND 89 (1006)
Q Consensus 14 ~~~~L~V~v~~a~~L~~~~-~~g~~dPyv~v~~~---~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~ 89 (1006)
..+.|.|+|++|++|+.++ ..+.+||||++++. .+.++|+++++++||+|||+|.|.+..... ....|.|+|||+
T Consensus 12 ~~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f~i~~~~l-~~~~l~i~v~d~ 90 (123)
T cd08390 12 EEEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSFKEL-QRRTLRLSVYDV 90 (123)
T ss_pred CCCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEEEcCHHHh-cccEEEEEEEEC
Confidence 3568999999999999998 67899999999983 456899999999999999999999876321 145799999999
Q ss_pred CCCCCCCCCCCceeEEEEEeCeeeeeeCCceeEEEEcee
Q 042999 90 KRYCNGSGRKNHFLGRVKLCGSQFARRGDEGLVYFPLEK 128 (1006)
Q Consensus 90 d~~~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~ 128 (1006)
+.. +++++||++.++++++ ........|++|++
T Consensus 91 ~~~-----~~~~~iG~~~i~L~~l-~~~~~~~~w~~L~~ 123 (123)
T cd08390 91 DRF-----SRHCIIGHVLFPLKDL-DLVKGGVVWRDLEP 123 (123)
T ss_pred CcC-----CCCcEEEEEEEeccce-ecCCCceEEEeCCC
Confidence 988 6899999999999996 44445568999863
No 144
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=99.56 E-value=3.6e-14 Score=133.28 Aligned_cols=115 Identities=27% Similarity=0.448 Sum_probs=91.2
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEECCeE-EEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEeCCCCCCCC
Q 042999 18 LVVEVVDARDLLPKDGQGSSSPYVIADFDGQR-KRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYNDKRYCNGS 96 (1006)
Q Consensus 18 L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~~~-~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~d~~~~~~ 96 (1006)
|.|+|++|++|+.. |.+||||.+.+++++ ++|+++++ .||.|||+|.|.+.... .....|.|.+||.+..
T Consensus 2 L~v~vi~a~~l~~~---~~~dpyv~v~~~~~~~~kT~~~~~-~~P~Wne~f~f~v~~~~-~~~~~l~i~v~d~~~~---- 72 (117)
T cd08383 2 LRLRILEAKNLPSK---GTRDPYCTVSLDQVEVARTKTVEK-LNPFWGEEFVFDDPPPD-VTFFTLSFYNKDKRSK---- 72 (117)
T ss_pred eEEEEEEecCCCcC---CCCCceEEEEECCEEeEecceEEC-CCCcccceEEEecCCcc-ccEEEEEEEEEecccC----
Confidence 78999999999876 789999999998754 79999988 99999999999987642 2246788899998876
Q ss_pred CCCCceeEEEEEeCeeeeeeCCceeEEEEceecCCceeeeEEEEEEEEE
Q 042999 97 GRKNHFLGRVKLCGSQFARRGDEGLVYFPLEKKSVFSWIRGEIGLRIYY 145 (1006)
Q Consensus 97 ~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~ 145 (1006)
+++.++|.+.+... ..+.....||+|.+........|+|++.+.|
T Consensus 73 -~~~~~~g~v~l~~~---~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 117 (117)
T cd08383 73 -DRDIVIGKVALSKL---DLGQGKDEWFPLTPVDPDSEVQGSVRLRARY 117 (117)
T ss_pred -CCeeEEEEEEecCc---CCCCcceeEEECccCCCCCCcCceEEEEEEC
Confidence 46667776655433 2355567899998765555678999999875
No 145
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=99.56 E-value=1.3e-15 Score=160.31 Aligned_cols=104 Identities=30% Similarity=0.494 Sum_probs=92.1
Q ss_pred cEEEEEEEEecCCCCCCCCCCCCcEEEEEEC-----CeEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEeCC
Q 042999 16 RKLVVEVVDARDLLPKDGQGSSSPYVIADFD-----GQRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYNDK 90 (1006)
Q Consensus 16 ~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~-----~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~d 90 (1006)
..|+|+|.+|+||.++|.+|.+||||++.+- ..+++|++++.++||+|||+|+|.+..... ++.|.|+|||||
T Consensus 180 ~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~wNEtftf~Lkp~Dk--drRlsiEvWDWD 257 (683)
T KOG0696|consen 180 DVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVWNETFTFKLKPSDK--DRRLSIEVWDWD 257 (683)
T ss_pred ceEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhhhcCccccceeEEecccccc--cceeEEEEeccc
Confidence 4789999999999999999999999999993 356999999999999999999999987543 789999999999
Q ss_pred CCCCCCCCCCceeEEEEEeCeeeeeeCCceeEEEEcee
Q 042999 91 RYCNGSGRKNHFLGRVKLCGSQFARRGDEGLVYFPLEK 128 (1006)
Q Consensus 91 ~~~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~ 128 (1006)
+. +++||+|...+.++++++.+. +.||.|..
T Consensus 258 rT-----sRNDFMGslSFgisEl~K~p~--~GWyKlLs 288 (683)
T KOG0696|consen 258 RT-----SRNDFMGSLSFGISELQKAPV--DGWYKLLS 288 (683)
T ss_pred cc-----ccccccceecccHHHHhhcch--hhHHHHhh
Confidence 99 899999999999999866543 45998764
No 146
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=99.56 E-value=2.6e-14 Score=136.96 Aligned_cols=103 Identities=27% Similarity=0.387 Sum_probs=89.2
Q ss_pred EEEEEEEeeccCCccCccCCCCCCCCCeEEEEEEC-----CEEEEeecccCCCCCeeccEEEEEEeCC--CcEEEEEEEE
Q 042999 619 GILELGILGARGLLPMKTKNGGKGSTDAYCVAKYG-----KKWVRTRTITDCFDPRWNEQYTWQVYDP--CTVLTVGVFD 691 (1006)
Q Consensus 619 g~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~-----~~~~rT~~~~~~~nP~wne~~~~~v~~~--~~~l~i~v~d 691 (1006)
|.|+|+|++|++|+..+ . .+.+||||.+.+. ....||+++.++.||.|||+|.|++... ...|.|+|||
T Consensus 13 ~~l~v~i~~a~nL~~~~---~-~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~~~~~l~v~v~d 88 (131)
T cd04026 13 NKLTVEVREAKNLIPMD---P-NGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPADKDRRLSIEVWD 88 (131)
T ss_pred CEEEEEEEEeeCCCCcC---C-CCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchhcCCEEEEEEEE
Confidence 68999999999998754 4 6789999999995 3678999999999999999999998754 4689999999
Q ss_pred CCCCCcCCCCCCCCceeEEEEEEcccccCCceEeeEEEeeee
Q 042999 692 NWRMFADASEERPDYRIGKIRIRVSTLENNKVYTTSYPLLVL 733 (1006)
Q Consensus 692 ~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~ 733 (1006)
++..+ ++++||.+.++|+++... ....||+|.+.
T Consensus 89 ~~~~~-------~~~~iG~~~~~l~~l~~~-~~~~w~~L~~~ 122 (131)
T cd04026 89 WDRTT-------RNDFMGSLSFGVSELIKM-PVDGWYKLLNQ 122 (131)
T ss_pred CCCCC-------CcceeEEEEEeHHHhCcC-ccCceEECcCc
Confidence 99876 799999999999999855 55789999764
No 147
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=99.56 E-value=9.1e-15 Score=139.47 Aligned_cols=103 Identities=19% Similarity=0.164 Sum_probs=84.6
Q ss_pred CcEEEEEEEeeccCCccCccCCCCCCCCCeEEEEEEC---CE--EEEeecccCCCCCeeccEEEEEEeC---CCcEEEEE
Q 042999 617 PVGILELGILGARGLLPMKTKNGGKGSTDAYCVAKYG---KK--WVRTRTITDCFDPRWNEQYTWQVYD---PCTVLTVG 688 (1006)
Q Consensus 617 ~~g~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~---~~--~~rT~~~~~~~nP~wne~~~~~v~~---~~~~l~i~ 688 (1006)
..+.|.|+|++|+||++++ . .|.+||||++.+. .+ +.||+++++++||+|||+|.|.|.. ....|.|+
T Consensus 13 ~~~~L~V~Vi~A~nL~~~~---~-~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~~l~~~~l~~~ 88 (136)
T cd08406 13 TAERLTVVVVKARNLVWDN---G-KTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVPAIVLQDLSLRVT 88 (136)
T ss_pred CCCEEEEEEEEeeCCCCcc---C-CCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEECCHHHhCCcEEEEE
Confidence 3468999999999999864 4 7889999999983 22 5589999999999999999999865 45689999
Q ss_pred EEECCCCCcCCCCCCCCceeEEEEEEcccccCCceEeeEEEeee
Q 042999 689 VFDNWRMFADASEERPDYRIGKIRIRVSTLENNKVYTTSYPLLV 732 (1006)
Q Consensus 689 v~d~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 732 (1006)
|||+|.++ ++++||++.|.... .+...++|..+..
T Consensus 89 V~~~d~~~-------~~~~iG~v~lg~~~--~g~~~~hW~~ml~ 123 (136)
T cd08406 89 VAESTEDG-------KTPNVGHVIIGPAA--SGMGLSHWNQMLA 123 (136)
T ss_pred EEeCCCCC-------CCCeeEEEEECCCC--CChhHHHHHHHHH
Confidence 99999877 89999999997764 3444577877754
No 148
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=99.55 E-value=1.1e-14 Score=140.32 Aligned_cols=103 Identities=19% Similarity=0.186 Sum_probs=86.3
Q ss_pred CcEEEEEEEeeccCCccCccCCCCCCCCCeEEEEEEC--CE---EEEeecccCCCCCeeccEEEEEEeC---CCcEEEEE
Q 042999 617 PVGILELGILGARGLLPMKTKNGGKGSTDAYCVAKYG--KK---WVRTRTITDCFDPRWNEQYTWQVYD---PCTVLTVG 688 (1006)
Q Consensus 617 ~~g~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~--~~---~~rT~~~~~~~nP~wne~~~~~v~~---~~~~l~i~ 688 (1006)
..+.|.|+|++|+||++++ . .|.+||||++.+. ++ ..||+++++++||.|||+|.|.+.. ....|.|+
T Consensus 13 ~~~~L~V~vi~a~~L~~~d---~-~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~~~~~~l~~~ 88 (136)
T cd08404 13 TTNRLTVVVLKARHLPKMD---V-SGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSEELEDISVEFL 88 (136)
T ss_pred CCCeEEEEEEEeeCCCccc---c-CCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEECCHHHhCCCEEEEE
Confidence 3468999999999998864 4 7899999999983 32 5689999999999999999999864 44579999
Q ss_pred EEECCCCCcCCCCCCCCceeEEEEEEcccccCCceEeeEEEeee
Q 042999 689 VFDNWRMFADASEERPDYRIGKIRIRVSTLENNKVYTTSYPLLV 732 (1006)
Q Consensus 689 v~d~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 732 (1006)
|||+|.++ ++++||++.+++... +....+|++|..
T Consensus 89 v~d~d~~~-------~~~~iG~~~~~~~~~--~~~~~~w~~l~~ 123 (136)
T cd08404 89 VLDSDRVT-------KNEVIGRLVLGPKAS--GSGGHHWKEVCN 123 (136)
T ss_pred EEECCCCC-------CCccEEEEEECCcCC--CchHHHHHHHHh
Confidence 99999987 899999999999983 444578998854
No 149
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=99.55 E-value=1.7e-14 Score=137.33 Aligned_cols=105 Identities=14% Similarity=0.146 Sum_probs=84.7
Q ss_pred CcEEEEEEEeeccCCccCccCCCCCCCCCeEEEEEECC-----EEEEeecccCCCCCeeccEEEEEEeC---CCcEEEEE
Q 042999 617 PVGILELGILGARGLLPMKTKNGGKGSTDAYCVAKYGK-----KWVRTRTITDCFDPRWNEQYTWQVYD---PCTVLTVG 688 (1006)
Q Consensus 617 ~~g~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~~-----~~~rT~~~~~~~nP~wne~~~~~v~~---~~~~l~i~ 688 (1006)
..|.|.|.|++|+||++++.. . .+.+||||++.+.. .+.||+++++++||+|||.|.|.+.. ....|.|+
T Consensus 13 ~~~~L~V~V~karnL~~~d~~-~-~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~v~~~~L~~~~L~~~ 90 (138)
T cd08407 13 AANRLLVVVIKAKNLHSDQLK-L-LLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFELPSELLAASSVELE 90 (138)
T ss_pred CCCeEEEEEEEecCCCccccC-C-CCCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEEECCHHHhCccEEEEE
Confidence 457899999999999997631 2 34589999999843 24589999999999999999999875 35679999
Q ss_pred EEECCCCCcCCCCCCCCceeEEEEEEcccccCCceEeeEEEeee
Q 042999 689 VFDNWRMFADASEERPDYRIGKIRIRVSTLENNKVYTTSYPLLV 732 (1006)
Q Consensus 689 v~d~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 732 (1006)
|||+|.++ ++++||.+.+++.. .|...++|..+..
T Consensus 91 V~d~d~~~-------~~d~iG~v~lg~~~--~g~~~~hW~~ml~ 125 (138)
T cd08407 91 VLNQDSPG-------QSLPLGRCSLGLHT--SGTERQHWEEMLD 125 (138)
T ss_pred EEeCCCCc-------CcceeceEEecCcC--CCcHHHHHHHHHh
Confidence 99999987 89999999999975 3444466766644
No 150
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.55 E-value=3.2e-14 Score=133.35 Aligned_cols=104 Identities=28% Similarity=0.408 Sum_probs=90.5
Q ss_pred cEEEEEEEEecCCCCCCCCCCCCcEEEEEECC-eEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEeCCCCCC
Q 042999 16 RKLVVEVVDARDLLPKDGQGSSSPYVIADFDG-QRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYNDKRYCN 94 (1006)
Q Consensus 16 ~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~-~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~d~~~~ 94 (1006)
|.|+|+|++|++|+..+..|.+||||++.+++ ..++|++++++.||.|||.|.|.+... ...|.|+|||++..
T Consensus 1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~~----~~~L~v~v~d~~~~-- 74 (120)
T cd04045 1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVPVTSP----NQKITLEVMDYEKV-- 74 (120)
T ss_pred CeEEEEEEeeECCCCccCCCCcCCEEEEEECCEEeeceeEECCCcCCccCceEEEEecCC----CCEEEEEEEECCCC--
Confidence 57999999999999998889999999999976 468999999999999999999988764 46899999999998
Q ss_pred CCCCCCceeEEEEEeCeeeeeeCCceeEEEEceecC
Q 042999 95 GSGRKNHFLGRVKLCGSQFARRGDEGLVYFPLEKKS 130 (1006)
Q Consensus 95 ~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~ 130 (1006)
++|++||++.+++.+++.. ....||.|.+.+
T Consensus 75 ---~~d~~IG~~~~~l~~l~~~--~~~~~~~~~~~~ 105 (120)
T cd04045 75 ---GKDRSLGSVEINVSDLIKK--NEDGKYVEYDDE 105 (120)
T ss_pred ---CCCCeeeEEEEeHHHhhCC--CCCceEEecCCC
Confidence 7899999999999997654 335688777654
No 151
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=99.55 E-value=7.3e-14 Score=126.80 Aligned_cols=93 Identities=24% Similarity=0.422 Sum_probs=73.1
Q ss_pred EEEEEeeccCCccCccCCCCCCCCCeEEEEEECC-----EEEEeecccCCCCCeeccEEEEEEeCCCcEEEEEEEECC--
Q 042999 621 LELGILGARGLLPMKTKNGGKGSTDAYCVAKYGK-----KWVRTRTITDCFDPRWNEQYTWQVYDPCTVLTVGVFDNW-- 693 (1006)
Q Consensus 621 L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~~-----~~~rT~~~~~~~nP~wne~~~~~v~~~~~~l~i~v~d~~-- 693 (1006)
|.|+|++|+|| .|.+||||++.+++ ...||+++.+|+||+|||+|.|++.. ...|.+.|||++
T Consensus 1 L~V~V~~A~~L---------~~~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~~-s~~L~~~v~d~~~~ 70 (118)
T cd08686 1 LNVIVHSAQGF---------KQSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELEG-SQTLRILCYEKCYS 70 (118)
T ss_pred CEEEEEeCCCC---------CCCCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeCC-CCEEEEEEEEcccc
Confidence 68999999999 44589999999852 46899999999999999999999864 668999999983
Q ss_pred -----CCCcCCCCCCCCceeEEEEEEcc--cccCCceEeeEEEe
Q 042999 694 -----RMFADASEERPDYRIGKIRIRVS--TLENNKVYTTSYPL 730 (1006)
Q Consensus 694 -----~~~~~~~~~~~d~~lG~~~i~l~--~l~~~~~~~~~~~L 730 (1006)
..+ +|+++|++.|.|. .+......+..+.|
T Consensus 71 ~~~~d~~~-------~d~~~G~g~i~Ld~~~~~~~~~~~~~~~~ 107 (118)
T cd08686 71 KVKLDGEG-------TDAIMGKGQIQLDPQSLQTKKWQEKVISM 107 (118)
T ss_pred cccccccC-------cccEEEEEEEEECHHHhccCCeeEEEEEe
Confidence 333 7999999888875 33333333444444
No 152
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=99.55 E-value=1.1e-13 Score=133.64 Aligned_cols=125 Identities=18% Similarity=0.239 Sum_probs=97.4
Q ss_pred EEEEEEecC--CCCCCCCCCCCcEEEEEE----C-CeEEEeeCcCCCCCCeeeeEEEEEeeCCC-----CCCCceEEEEE
Q 042999 19 VVEVVDARD--LLPKDGQGSSSPYVIADF----D-GQRKRTSTKFRDLNPVWNEPLEFIVSDPK-----NMDCEELEIEV 86 (1006)
Q Consensus 19 ~V~v~~a~~--L~~~~~~g~~dPyv~v~~----~-~~~~kT~~~~~t~nP~wne~f~f~~~~~~-----~~~~~~L~i~V 86 (1006)
.++|..|++ |+..+..+.+||||++++ + .++.||+++++|+||+|||+|.|.+.... ......|.|+|
T Consensus 5 el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~V 84 (155)
T cd08690 5 ELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFEV 84 (155)
T ss_pred EEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEEE
Confidence 455555555 777787889999999997 2 46799999999999999999999996542 12356799999
Q ss_pred EeCCCCCCCCCCCCceeEEEEEeCeeeeeeCCceeEEEEceecCCceeeeEEEEEEEEEEecCc
Q 042999 87 YNDKRYCNGSGRKNHFLGRVKLCGSQFARRGDEGLVYFPLEKKSVFSWIRGEIGLRIYYYDELS 150 (1006)
Q Consensus 87 ~d~d~~~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~~~~ 150 (1006)
||++.++ ++|++||++.++|+.+ ........|++|.... ....|+|++++..-....
T Consensus 85 ~d~~~f~----~~D~~iG~~~i~L~~l-~~~~~~~~~~~L~~~~--k~~Gg~l~v~ir~r~p~~ 141 (155)
T cd08690 85 YHKGGFL----RSDKLLGTAQVKLEPL-ETKCEIHESVDLMDGR--KATGGKLEVKVRLREPLT 141 (155)
T ss_pred EeCCCcc----cCCCeeEEEEEEcccc-cccCcceEEEEhhhCC--CCcCCEEEEEEEecCCCc
Confidence 9999862 4799999999999996 4444455799988533 245799999999876653
No 153
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=99.54 E-value=2.7e-14 Score=137.02 Aligned_cols=106 Identities=24% Similarity=0.436 Sum_probs=91.4
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEEC----CeEEEeeCcCCCCCCeeeeEEEEEeeCCC------------CCCCce
Q 042999 18 LVVEVVDARDLLPKDGQGSSSPYVIADFD----GQRKRTSTKFRDLNPVWNEPLEFIVSDPK------------NMDCEE 81 (1006)
Q Consensus 18 L~V~v~~a~~L~~~~~~g~~dPyv~v~~~----~~~~kT~~~~~t~nP~wne~f~f~~~~~~------------~~~~~~ 81 (1006)
|+|+|++|++|+.+ ..|.+||||+++++ +++++|+++.++.||.|||+|.|.+.... +.....
T Consensus 1 L~V~Vi~A~~L~~~-~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~ 79 (137)
T cd08675 1 LSVRVLECRDLALK-SNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSE 79 (137)
T ss_pred CEEEEEEccCCCcc-cCCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccE
Confidence 57999999999988 77899999999998 77899999999999999999999987741 223668
Q ss_pred EEEEEEeCCCCCCCCCCCCceeEEEEEeCeeeeeeCCceeEEEEceecC
Q 042999 82 LEIEVYNDKRYCNGSGRKNHFLGRVKLCGSQFARRGDEGLVYFPLEKKS 130 (1006)
Q Consensus 82 L~i~V~d~d~~~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~ 130 (1006)
|.|+|||++.. ++++|||++.+++.++. .......|++|.+.+
T Consensus 80 l~i~V~d~~~~-----~~~~~IG~~~i~l~~l~-~~~~~~~W~~L~~~~ 122 (137)
T cd08675 80 LRVELWHASMV-----SGDDFLGEVRIPLQGLQ-QAGSHQAWYFLQPRE 122 (137)
T ss_pred EEEEEEcCCcC-----cCCcEEEEEEEehhhcc-CCCcccceEecCCcC
Confidence 99999999988 78999999999999964 344556899998765
No 154
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=99.54 E-value=7e-14 Score=133.47 Aligned_cols=126 Identities=18% Similarity=0.269 Sum_probs=101.2
Q ss_pred CcccEEEEEEEEecCCCCCCCCCCCCcEEEEEECCeE-EEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEeCCC
Q 042999 13 FTVRKLVVEVVDARDLLPKDGQGSSSPYVIADFDGQR-KRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYNDKR 91 (1006)
Q Consensus 13 ~~~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~~~-~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~d~ 91 (1006)
+....|.|.|++|++|+.++ +|||.+.+++++ .||+++.++.||.|+|.|.|..... -..|.|.||+.+.
T Consensus 8 R~~~sL~v~V~EAk~Lp~~~-----~~Y~~i~Ld~~~vaRT~v~~~~~nP~W~E~F~f~~~~~----~~~l~v~v~k~~~ 78 (146)
T cd04013 8 RTENSLKLWIIEAKGLPPKK-----RYYCELCLDKTLYARTTSKLKTDTLFWGEHFEFSNLPP----VSVITVNLYRESD 78 (146)
T ss_pred EEEEEEEEEEEEccCCCCcC-----CceEEEEECCEEEEEEEEEcCCCCCcceeeEEecCCCc----ccEEEEEEEEccC
Confidence 35578999999999998765 799999999988 6999999999999999999986554 3579999987653
Q ss_pred CCCCCCCCCceeEEEEEeCeeeeeeCCceeEEEEceecCCce--------eeeEEEEEEEEEEecC
Q 042999 92 YCNGSGRKNHFLGRVKLCGSQFARRGDEGLVYFPLEKKSVFS--------WIRGEIGLRIYYYDEL 149 (1006)
Q Consensus 92 ~~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~~~~--------~~~G~i~l~~~~~~~~ 149 (1006)
.. +.+.++++||.+.|++.++. .+...+.||+|....... ...+.|++++.|.+..
T Consensus 79 ~~-~~~~~~~~IG~V~Ip~~~l~-~~~~ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~~~~ 142 (146)
T cd04013 79 KK-KKKDKSQLIGTVNIPVTDVS-SRQFVEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQSTR 142 (146)
T ss_pred cc-ccccCCcEEEEEEEEHHHhc-CCCcccEEEEeecCCCCCccccccccCCCCEEEEEEEEEEee
Confidence 31 01126899999999999964 677778999998755442 3458999999998865
No 155
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.54 E-value=3.6e-14 Score=131.38 Aligned_cols=98 Identities=23% Similarity=0.291 Sum_probs=83.7
Q ss_pred CCCCCeEEEEEECCE-EEEeecccCCCCCeeccEEEEEEeCC-CcEEEEEEEECCCCCcCCCCCCCCceeEEEEEEcccc
Q 042999 641 KGSTDAYCVAKYGKK-WVRTRTITDCFDPRWNEQYTWQVYDP-CTVLTVGVFDNWRMFADASEERPDYRIGKIRIRVSTL 718 (1006)
Q Consensus 641 ~g~sdpyv~v~~~~~-~~rT~~~~~~~nP~wne~~~~~v~~~-~~~l~i~v~d~~~~~~~~~~~~~d~~lG~~~i~l~~l 718 (1006)
+|++||||+|.++++ ..+|+++.++.||.|||.|.|.+.++ ...|.|.|||++.+ +|++||.+.++|.++
T Consensus 10 ~G~~dPYv~v~v~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~--------~d~~iG~~~v~L~~l 81 (111)
T cd04052 10 TGLLSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDDRDR--------HDPVLGSVSISLNDL 81 (111)
T ss_pred CCCCCceEEEEECCEEEEEEeeeccCCCCccCCceEEEecCcCCCEEEEEEEECCCC--------CCCeEEEEEecHHHH
Confidence 789999999999875 57999999999999999999999875 56899999999875 488999999999998
Q ss_pred cC-CceEeeEEEeeeeccCCcccccEEEEEEEEec
Q 042999 719 EN-NKVYTTSYPLLVLLRTGLKKMGEIELAVRFVC 752 (1006)
Q Consensus 719 ~~-~~~~~~~~~L~~~~~~g~~~~G~l~l~~~~~~ 752 (1006)
.. +.....||+|.+ .+.|+|++++.|.+
T Consensus 82 ~~~~~~~~~w~~L~~------~~~G~i~~~~~~~p 110 (111)
T cd04052 82 IDATSVGQQWFPLSG------NGQGRIRISALWKP 110 (111)
T ss_pred HhhhhccceeEECCC------CCCCEEEEEEEEec
Confidence 54 344579999964 23599999999975
No 156
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=99.54 E-value=9.1e-14 Score=132.34 Aligned_cols=118 Identities=25% Similarity=0.276 Sum_probs=91.5
Q ss_pred EEEEEEeeccCCccCccCCCCCCCCCeEEEEEEC--C-----------EEEEeecccCCCCCee-ccEEEEEEeCCCcEE
Q 042999 620 ILELGILGARGLLPMKTKNGGKGSTDAYCVAKYG--K-----------KWVRTRTITDCFDPRW-NEQYTWQVYDPCTVL 685 (1006)
Q Consensus 620 ~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~--~-----------~~~rT~~~~~~~nP~w-ne~~~~~v~~~~~~l 685 (1006)
...|.+++|+||+ . +. .|++||||++.+. + +..||+++++++||+| ||+|.|.+. ..+.|
T Consensus 2 ~~~~~~~~A~~L~-~---~~-fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~-~~~~L 75 (137)
T cd08691 2 SFSLSGLQARNLK-K---GM-FFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGL-PTDVL 75 (137)
T ss_pred EEEEEEEEeCCCC-C---cc-CCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcC-CCCEE
Confidence 3678999999996 3 45 7899999999984 2 3689999999999999 999999985 45689
Q ss_pred EEEEEECCCCCcCCCCCCCCceeEEEEEEcccccCCc---eEeeEEEeeeeccCCcccccEEEEEE
Q 042999 686 TVGVFDNWRMFADASEERPDYRIGKIRIRVSTLENNK---VYTTSYPLLVLLRTGLKKMGEIELAV 748 (1006)
Q Consensus 686 ~i~v~d~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~---~~~~~~~L~~~~~~g~~~~G~l~l~~ 748 (1006)
.|+|||++..+ +. ..+++||++.|++.++..+. ....||+|......+. -.|+|.+.+
T Consensus 76 ~v~V~D~~~~~--~~--~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~l~k~~~~s~-v~G~~~l~~ 136 (137)
T cd08691 76 EIEVKDKFAKS--RP--IIRRFLGKLSIPVQRLLERHAIGDQELSYTLGRRTPTDH-VSGQLTFRF 136 (137)
T ss_pred EEEEEecCCCC--Cc--cCCceEEEEEEEHHHhcccccCCceEEEEECCcCCCCCc-EEEEEEEEe
Confidence 99999986533 00 02789999999999997552 3467999975544333 349998865
No 157
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.53 E-value=6e-14 Score=131.24 Aligned_cols=112 Identities=30% Similarity=0.427 Sum_probs=94.3
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEECC-eEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEeCCCCCCCC
Q 042999 18 LVVEVVDARDLLPKDGQGSSSPYVIADFDG-QRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYNDKRYCNGS 96 (1006)
Q Consensus 18 L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~-~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~d~~~~~~ 96 (1006)
|+|+|++|++|+..+..+.+||||++.+++ ..++|+++.++.||.|||+|.|.+.... ...|.|+|||++..
T Consensus 1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~~~~~~T~v~~~~~~P~Wne~f~~~~~~~~---~~~l~~~v~d~~~~---- 73 (115)
T cd04040 1 LTVDVISAENLPSADRNGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPVPSRV---RAVLKVEVYDWDRG---- 73 (115)
T ss_pred CEEEEEeeeCCCCCCCCCCCCCeEEEEECCCcceeeceecCCCCCcccccEEEEeccCC---CCEEEEEEEeCCCC----
Confidence 579999999999988888999999999975 4589999999999999999999987642 56899999999988
Q ss_pred CCCCceeEEEEEeCeeeeeeCCceeEEEEceecCCceeeeEEEE
Q 042999 97 GRKNHFLGRVKLCGSQFARRGDEGLVYFPLEKKSVFSWIRGEIG 140 (1006)
Q Consensus 97 ~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~i~ 140 (1006)
+++++||++.+++.++ ..+.....|++|.+.+.. ..|.+.
T Consensus 74 -~~~~~iG~~~~~l~~l-~~~~~~~~~~~L~~~g~~--~~~~~~ 113 (115)
T cd04040 74 -GKDDLLGSAYIDLSDL-EPEETTELTLPLDGQGGG--KLGAVF 113 (115)
T ss_pred -CCCCceEEEEEEHHHc-CCCCcEEEEEECcCCCCc--cCceEE
Confidence 7899999999999996 445566789999865532 256554
No 158
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=99.53 E-value=2.2e-14 Score=138.41 Aligned_cols=104 Identities=25% Similarity=0.289 Sum_probs=86.9
Q ss_pred CCcEEEEEEEeeccCCccCccCCCCCCCCCeEEEEEEC--C---EEEEeecccCCCCCeeccEEEEEEeCC---CcEEEE
Q 042999 616 PPVGILELGILGARGLLPMKTKNGGKGSTDAYCVAKYG--K---KWVRTRTITDCFDPRWNEQYTWQVYDP---CTVLTV 687 (1006)
Q Consensus 616 ~~~g~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~--~---~~~rT~~~~~~~nP~wne~~~~~v~~~---~~~l~i 687 (1006)
+..|.|+|+|++|++|++++ . .|.+||||.|.++ + ...+|+++++++||.|||+|.|++... ...|.|
T Consensus 12 ~~~~~l~V~Vi~a~~L~~~d---~-~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~ 87 (136)
T cd08402 12 PTAGKLTVVILEAKNLKKMD---V-GGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPFEQIQKVHLIV 87 (136)
T ss_pred CCCCeEEEEEEEeeCCCccc---C-CCCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEECCHHHhCCCEEEE
Confidence 35689999999999998864 4 7889999999984 2 356899999999999999999998642 247999
Q ss_pred EEEECCCCCcCCCCCCCCceeEEEEEEcccccCCceEeeEEEeee
Q 042999 688 GVFDNWRMFADASEERPDYRIGKIRIRVSTLENNKVYTTSYPLLV 732 (1006)
Q Consensus 688 ~v~d~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 732 (1006)
+|||++.++ +|++||.+.|++... +...++|+++..
T Consensus 88 ~v~d~~~~~-------~~~~iG~~~i~~~~~--~~~~~~W~~~~~ 123 (136)
T cd08402 88 TVLDYDRIG-------KNDPIGKVVLGCNAT--GAELRHWSDMLA 123 (136)
T ss_pred EEEeCCCCC-------CCceeEEEEECCccC--ChHHHHHHHHHh
Confidence 999999887 899999999999864 444578888854
No 159
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.53 E-value=7.7e-14 Score=134.58 Aligned_cols=103 Identities=21% Similarity=0.249 Sum_probs=85.6
Q ss_pred CcEEEEEEEeeccCCccCccCCCCCCCCCeEEEEEE--CC---EEEEeecccCCCCCeeccEEEEEEeC---CCcEEEEE
Q 042999 617 PVGILELGILGARGLLPMKTKNGGKGSTDAYCVAKY--GK---KWVRTRTITDCFDPRWNEQYTWQVYD---PCTVLTVG 688 (1006)
Q Consensus 617 ~~g~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~--~~---~~~rT~~~~~~~nP~wne~~~~~v~~---~~~~l~i~ 688 (1006)
..|.|.|+|++|+||++++ . .|.+||||++.+ ++ ...||++++++.||.|||.|.|.+.. ....|.|+
T Consensus 13 ~~~~L~v~vi~a~~L~~~~---~-~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~i~~~~~~~~~l~~~ 88 (136)
T cd08405 13 TANRITVNIIKARNLKAMD---I-NGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIPLERLRETTLIIT 88 (136)
T ss_pred CCCeEEEEEEEeeCCCccc---c-CCCCCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEeCCHHHhCCCEEEEE
Confidence 4578999999999998754 4 788999999998 32 35689999999999999999999753 24589999
Q ss_pred EEECCCCCcCCCCCCCCceeEEEEEEcccccCCceEeeEEEeee
Q 042999 689 VFDNWRMFADASEERPDYRIGKIRIRVSTLENNKVYTTSYPLLV 732 (1006)
Q Consensus 689 v~d~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 732 (1006)
|||++.++ +|++||++.|++.+. +...++|++|..
T Consensus 89 v~d~~~~~-------~~~~lG~~~i~~~~~--~~~~~~w~~~~~ 123 (136)
T cd08405 89 VMDKDRLS-------RNDLIGKIYLGWKSG--GLELKHWKDMLS 123 (136)
T ss_pred EEECCCCC-------CCcEeEEEEECCccC--CchHHHHHHHHh
Confidence 99999887 789999999999876 444467887754
No 160
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.52 E-value=4.2e-14 Score=133.65 Aligned_cols=117 Identities=20% Similarity=0.242 Sum_probs=89.6
Q ss_pred EEEEEEeeccCCccCccCCCCCCCCCeEEEEEECCEE--EEeecccCCCCCeeccEEEEEEeCC-CcEEEEEEEECCCCC
Q 042999 620 ILELGILGARGLLPMKTKNGGKGSTDAYCVAKYGKKW--VRTRTITDCFDPRWNEQYTWQVYDP-CTVLTVGVFDNWRMF 696 (1006)
Q Consensus 620 ~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~~~~--~rT~~~~~~~nP~wne~~~~~v~~~-~~~l~i~v~d~~~~~ 696 (1006)
.|+|.|++|+||++++ . .|++||||++.+++.. .||+++++++||+|||+|.|++..+ ...|.|+|||+|.++
T Consensus 1 ~lrV~Vi~a~~L~~~d---~-~g~~DPYv~v~~~~~~~~~kT~~v~~t~nP~Wne~f~f~~~~~~~~~L~~~V~d~d~~~ 76 (124)
T cd04037 1 LVRVYVVRARNLQPKD---P-NGKSDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEATLPGNSILKISVMDYDLLG 76 (124)
T ss_pred CEEEEEEECcCCCCCC---C-CCCCCcEEEEEECCeeccceeeEEECCCCCccceEEEEEecCCCCCEEEEEEEECCCCC
Confidence 3789999999998864 4 7899999999999865 4788899999999999999998765 568999999999887
Q ss_pred cCCCCCCCCceeEEEEEEcccccCCceEeeEEEeeeeccCCcccccEEEEEEEEec
Q 042999 697 ADASEERPDYRIGKIRIRVSTLENNKVYTTSYPLLVLLRTGLKKMGEIELAVRFVC 752 (1006)
Q Consensus 697 ~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~l~l~~~~~~ 752 (1006)
+|++||++.|+|.+..-. .+|+.... . ....+.|.++..-.+.+
T Consensus 77 -------~dd~iG~~~i~l~~~~~~---~~~~~~~~-~-~~~~~~~~~~~~~~~~~ 120 (124)
T cd04037 77 -------SDDLIGETVIDLEDRFFS---KHRATCGL-P-PTYEESGPNQWRDSLKP 120 (124)
T ss_pred -------CCceeEEEEEeecccccc---hHHHhccC-C-CcccccCceecCcccCc
Confidence 799999999999876532 22322211 1 11124577777655544
No 161
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=99.52 E-value=8.5e-15 Score=154.30 Aligned_cols=117 Identities=26% Similarity=0.418 Sum_probs=99.3
Q ss_pred ceeeeEEEEEeeeCCccccccccccCCCCCccccccCCCCcEEEEEEEeeccCCccCccCCCCCCCCCeEEEEEEC----
Q 042999 578 SYCGRIQLKLCLEGGYHVLDEAAHVCSDFRPTAKQLWKPPVGILELGILGARGLLPMKTKNGGKGSTDAYCVAKYG---- 653 (1006)
Q Consensus 578 ~~~G~l~l~v~l~~~~~~~d~~~~~~~~~~p~~~~l~~~~~g~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~---- 653 (1006)
+.+|+|++.+.+.+ ..|+|+|.+|+||.|||. +|-|||||.+++-
T Consensus 166 E~RGrl~l~~~~~~---------------------------~~l~v~i~ea~NLiPMDp----NGlSDPYvk~kliPD~~ 214 (683)
T KOG0696|consen 166 ERRGRLYLEAHIKR---------------------------DVLTVTIKEAKNLIPMDP----NGLSDPYVKLKLIPDPK 214 (683)
T ss_pred hhcceEEEEEEecC---------------------------ceEEEEehhhccccccCC----CCCCCcceeEEeccCCc
Confidence 44799998876543 268999999999999975 8899999999982
Q ss_pred -CEEEEeecccCCCCCeeccEEEEEEeC--CCcEEEEEEEECCCCCcCCCCCCCCceeEEEEEEcccccCCceEeeEEEe
Q 042999 654 -KKWVRTRTITDCFDPRWNEQYTWQVYD--PCTVLTVGVFDNWRMFADASEERPDYRIGKIRIRVSTLENNKVYTTSYPL 730 (1006)
Q Consensus 654 -~~~~rT~~~~~~~nP~wne~~~~~v~~--~~~~l~i~v~d~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L 730 (1006)
....+|+|++.++||+|||+|+|.+.. ....|.|+|||||+-+ .+||+|...+.+++|... +.+.||.|
T Consensus 215 ~~sKqKTkTik~~LNP~wNEtftf~Lkp~DkdrRlsiEvWDWDrTs-------RNDFMGslSFgisEl~K~-p~~GWyKl 286 (683)
T KOG0696|consen 215 NESKQKTKTIKATLNPVWNETFTFKLKPSDKDRRLSIEVWDWDRTS-------RNDFMGSLSFGISELQKA-PVDGWYKL 286 (683)
T ss_pred chhhhhhhhhhhhcCccccceeEEecccccccceeEEEEecccccc-------cccccceecccHHHHhhc-chhhHHHH
Confidence 345699999999999999999999875 4568999999999876 899999999999999854 45789988
Q ss_pred eee
Q 042999 731 LVL 733 (1006)
Q Consensus 731 ~~~ 733 (1006)
...
T Consensus 287 Lsq 289 (683)
T KOG0696|consen 287 LSQ 289 (683)
T ss_pred hhh
Confidence 763
No 162
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.51 E-value=6.5e-14 Score=129.65 Aligned_cols=101 Identities=26% Similarity=0.443 Sum_probs=86.4
Q ss_pred CCCCCCcEEEEEECCe-EEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEeCCCCCCCCCCCCceeEEEEEeCe
Q 042999 33 GQGSSSPYVIADFDGQ-RKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYNDKRYCNGSGRKNHFLGRVKLCGS 111 (1006)
Q Consensus 33 ~~g~~dPyv~v~~~~~-~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~d~~~~~~~~~d~~lG~~~v~l~ 111 (1006)
..|.+||||++.++++ .++|++++++.||+|||.|.|.+.+.. ...|.|.|||++.+ ++++||.+.++|+
T Consensus 9 ~~G~~dPYv~v~v~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~---~~~l~i~v~d~~~~------~d~~iG~~~v~L~ 79 (111)
T cd04052 9 KTGLLSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDRR---KSRVTVVVKDDRDR------HDPVLGSVSISLN 79 (111)
T ss_pred cCCCCCceEEEEECCEEEEEEeeeccCCCCccCCceEEEecCcC---CCEEEEEEEECCCC------CCCeEEEEEecHH
Confidence 3688999999999875 579999999999999999999987643 56799999999987 7899999999999
Q ss_pred eeeeeCCceeEEEEceecCCceeeeEEEEEEEEEEe
Q 042999 112 QFARRGDEGLVYFPLEKKSVFSWIRGEIGLRIYYYD 147 (1006)
Q Consensus 112 ~l~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~ 147 (1006)
+++..+.....||+|... ..|+|++++.|.|
T Consensus 80 ~l~~~~~~~~~w~~L~~~-----~~G~i~~~~~~~p 110 (111)
T cd04052 80 DLIDATSVGQQWFPLSGN-----GQGRIRISALWKP 110 (111)
T ss_pred HHHhhhhccceeEECCCC-----CCCEEEEEEEEec
Confidence 976655556789999852 3799999999976
No 163
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=99.51 E-value=2.2e-14 Score=137.87 Aligned_cols=103 Identities=17% Similarity=0.259 Sum_probs=86.9
Q ss_pred CcEEEEEEEeeccCCccCccCCCCCCCCCeEEEEEEC-----CEEEEeecccCCCCCeeccEEEEEEeCC---CcEEEEE
Q 042999 617 PVGILELGILGARGLLPMKTKNGGKGSTDAYCVAKYG-----KKWVRTRTITDCFDPRWNEQYTWQVYDP---CTVLTVG 688 (1006)
Q Consensus 617 ~~g~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~-----~~~~rT~~~~~~~nP~wne~~~~~v~~~---~~~l~i~ 688 (1006)
..|.|.|+|++|+||++++ . .|.+||||++.+. ....||+++++++||.|||+|.|++... ...|.|+
T Consensus 11 ~~~~L~V~Vi~a~~L~~~d---~-~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~~~l~~~ 86 (133)
T cd08384 11 QRRGLIVGIIRCVNLAAMD---A-NGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAKKTLEIT 86 (133)
T ss_pred CCCEEEEEEEEEcCCCCcC---C-CCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHHHhCCCEEEEE
Confidence 5689999999999999865 4 7789999999984 2467999999999999999999998653 4589999
Q ss_pred EEECCCCCcCCCCCCCCceeEEEEEEcccccCCceEeeEEEeee
Q 042999 689 VFDNWRMFADASEERPDYRIGKIRIRVSTLENNKVYTTSYPLLV 732 (1006)
Q Consensus 689 v~d~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 732 (1006)
|||+|..+ +|++||.+.|++.. .+....+||++..
T Consensus 87 V~d~d~~~-------~~~~lG~~~i~l~~--~~~~~~~W~~~l~ 121 (133)
T cd08384 87 VWDKDIGK-------SNDYIGGLQLGINA--KGERLRHWLDCLK 121 (133)
T ss_pred EEeCCCCC-------CccEEEEEEEecCC--CCchHHHHHHHHh
Confidence 99999876 78999999999986 3444478998854
No 164
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=99.51 E-value=1.8e-13 Score=131.37 Aligned_cols=104 Identities=21% Similarity=0.269 Sum_probs=83.3
Q ss_pred CcEEEEEEEeeccCCccCccCCCCCCCCCeEEEEEE--CC---EEEEeecccCCCCCeeccEEEEEEeC---CCcEEEEE
Q 042999 617 PVGILELGILGARGLLPMKTKNGGKGSTDAYCVAKY--GK---KWVRTRTITDCFDPRWNEQYTWQVYD---PCTVLTVG 688 (1006)
Q Consensus 617 ~~g~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~--~~---~~~rT~~~~~~~nP~wne~~~~~v~~---~~~~l~i~ 688 (1006)
..|.|.|+|++|++|++++ . .|.+||||++.+ ++ +..+|+++++++||.|||+|.|.+.. ....|.|+
T Consensus 12 ~~~~L~V~vi~a~~L~~~d---~-~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~~l~~~~l~~~ 87 (135)
T cd08410 12 SAGRLNVDIIRAKQLLQTD---M-SQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQEELENVSLVFT 87 (135)
T ss_pred CCCeEEEEEEEecCCCccc---C-CCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEeCCHHHhCCCEEEEE
Confidence 5689999999999999865 4 778999999997 32 35689999999999999999999854 23479999
Q ss_pred EEECCCCCcCCCCCCCCceeEEEEEEcccccCCceEeeEEEeee
Q 042999 689 VFDNWRMFADASEERPDYRIGKIRIRVSTLENNKVYTTSYPLLV 732 (1006)
Q Consensus 689 v~d~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 732 (1006)
|||+|..+ +|++||.+.|....... ...++|+.|..
T Consensus 88 V~d~d~~~-------~~~~iG~~~l~~~~~~~-~~~~~W~~l~~ 123 (135)
T cd08410 88 VYGHNVKS-------SNDFIGRIVIGQYSSGP-SETNHWRRMLN 123 (135)
T ss_pred EEeCCCCC-------CCcEEEEEEEcCccCCc-hHHHHHHHHHh
Confidence 99999876 89999999877644432 22367887765
No 165
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=99.51 E-value=5.3e-14 Score=134.20 Aligned_cols=105 Identities=26% Similarity=0.327 Sum_probs=86.9
Q ss_pred ccEEEEEEEEecCCCCCCCCCCCCcEEEEEECC-----eEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEeC
Q 042999 15 VRKLVVEVVDARDLLPKDGQGSSSPYVIADFDG-----QRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYND 89 (1006)
Q Consensus 15 ~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~-----~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~ 89 (1006)
.+.|.|+|++|+||+..+..|.+||||++++.. .+++|+++++++||+|||+|.|.+... .+....|.|.|||+
T Consensus 14 ~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~-~l~~~~l~~~V~~~ 92 (136)
T cd08406 14 AERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVPAI-VLQDLSLRVTVAES 92 (136)
T ss_pred CCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEECCHH-HhCCcEEEEEEEeC
Confidence 458999999999999999889999999999942 257899999999999999999998763 23367899999999
Q ss_pred CCCCCCCCCCCceeEEEEEeCeeeeeeCCceeEEEEcee
Q 042999 90 KRYCNGSGRKNHFLGRVKLCGSQFARRGDEGLVYFPLEK 128 (1006)
Q Consensus 90 d~~~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~ 128 (1006)
|.+ +++++||++.+.... .+....+|..+..
T Consensus 93 d~~-----~~~~~iG~v~lg~~~---~g~~~~hW~~ml~ 123 (136)
T cd08406 93 TED-----GKTPNVGHVIIGPAA---SGMGLSHWNQMLA 123 (136)
T ss_pred CCC-----CCCCeeEEEEECCCC---CChhHHHHHHHHH
Confidence 998 799999999997653 3444456776554
No 166
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=99.51 E-value=2.7e-14 Score=137.34 Aligned_cols=107 Identities=23% Similarity=0.410 Sum_probs=89.9
Q ss_pred cccEEEEEEEEecCCCCCCCCCCCCcEEEEEEC-----CeEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEe
Q 042999 14 TVRKLVVEVVDARDLLPKDGQGSSSPYVIADFD-----GQRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYN 88 (1006)
Q Consensus 14 ~~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~-----~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d 88 (1006)
..+.|.|+|++|++|+.++..|.+||||++.+. ..+++|+++++++||+|||+|.|.+.... +....|.|+|||
T Consensus 11 ~~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~-l~~~~l~~~V~d 89 (133)
T cd08384 11 QRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSD-LAKKTLEITVWD 89 (133)
T ss_pred CCCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHHH-hCCCEEEEEEEe
Confidence 467899999999999999988999999999995 24589999999999999999999987632 225689999999
Q ss_pred CCCCCCCCCCCCceeEEEEEeCeeeeeeCCceeEEEEceec
Q 042999 89 DKRYCNGSGRKNHFLGRVKLCGSQFARRGDEGLVYFPLEKK 129 (1006)
Q Consensus 89 ~d~~~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~ 129 (1006)
++.. +++++||++.+++.. .+....+|+.+.+.
T Consensus 90 ~d~~-----~~~~~lG~~~i~l~~---~~~~~~~W~~~l~~ 122 (133)
T cd08384 90 KDIG-----KSNDYIGGLQLGINA---KGERLRHWLDCLKN 122 (133)
T ss_pred CCCC-----CCccEEEEEEEecCC---CCchHHHHHHHHhC
Confidence 9988 789999999999975 34445679887543
No 167
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=99.50 E-value=5.1e-14 Score=135.41 Aligned_cols=103 Identities=24% Similarity=0.259 Sum_probs=84.7
Q ss_pred CcEEEEEEEeeccCCccCccCCCCCCCCCeEEEEEEC--C---EEEEeecccCCCCCeeccEEEEEEeC---CCcEEEEE
Q 042999 617 PVGILELGILGARGLLPMKTKNGGKGSTDAYCVAKYG--K---KWVRTRTITDCFDPRWNEQYTWQVYD---PCTVLTVG 688 (1006)
Q Consensus 617 ~~g~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~--~---~~~rT~~~~~~~nP~wne~~~~~v~~---~~~~l~i~ 688 (1006)
..|.|+|+|++|++|++++ . .|.+||||++.+. + ...+|+++++++||.|||+|.|.+.. ....|.|+
T Consensus 12 ~~~~L~V~v~~A~~L~~~d---~-~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~~~~~~l~~~ 87 (134)
T cd08403 12 TAGRLTLTIIKARNLKAMD---I-TGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPENVDNVSLIIA 87 (134)
T ss_pred CCCEEEEEEEEeeCCCccc---c-CCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEECCHHHhCCCEEEEE
Confidence 5689999999999999865 4 7899999999983 2 25689999999999999999999854 22469999
Q ss_pred EEECCCCCcCCCCCCCCceeEEEEEEcccccCCceEeeEEEeee
Q 042999 689 VFDNWRMFADASEERPDYRIGKIRIRVSTLENNKVYTTSYPLLV 732 (1006)
Q Consensus 689 v~d~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 732 (1006)
|||++..+ +|++||++.|++... +...++|+++..
T Consensus 88 v~d~~~~~-------~~~~IG~~~l~~~~~--~~~~~~w~~~~~ 122 (134)
T cd08403 88 VVDYDRVG-------HNELIGVCRVGPNAD--GQGREHWNEMLA 122 (134)
T ss_pred EEECCCCC-------CCceeEEEEECCCCC--CchHHHHHHHHH
Confidence 99999887 899999999998743 333478887754
No 168
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=99.50 E-value=6e-14 Score=133.62 Aligned_cols=104 Identities=24% Similarity=0.322 Sum_probs=85.4
Q ss_pred ccEEEEEEEEecCCCCCCC--CCCCCcEEEEEECC-----eEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEE
Q 042999 15 VRKLVVEVVDARDLLPKDG--QGSSSPYVIADFDG-----QRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVY 87 (1006)
Q Consensus 15 ~~~L~V~v~~a~~L~~~~~--~g~~dPyv~v~~~~-----~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~ 87 (1006)
.+.|.|.|++|+||..++. .+.+||||++++.. .++||+++++++||+|||.|.|.+... .+....|.|+||
T Consensus 14 ~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~v~~~-~L~~~~L~~~V~ 92 (138)
T cd08407 14 ANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFELPSE-LLAASSVELEVL 92 (138)
T ss_pred CCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEEECCHH-HhCccEEEEEEE
Confidence 5679999999999999883 35599999999953 247999999999999999999998763 333678999999
Q ss_pred eCCCCCCCCCCCCceeEEEEEeCeeeeeeCCceeEEEEce
Q 042999 88 NDKRYCNGSGRKNHFLGRVKLCGSQFARRGDEGLVYFPLE 127 (1006)
Q Consensus 88 d~d~~~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~ 127 (1006)
|+|.+ +++++||++.+++.. .|....+|..+.
T Consensus 93 d~d~~-----~~~d~iG~v~lg~~~---~g~~~~hW~~ml 124 (138)
T cd08407 93 NQDSP-----GQSLPLGRCSLGLHT---SGTERQHWEEML 124 (138)
T ss_pred eCCCC-----cCcceeceEEecCcC---CCcHHHHHHHHH
Confidence 99999 899999999999864 344444676554
No 169
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.50 E-value=4.6e-14 Score=180.06 Aligned_cols=119 Identities=22% Similarity=0.401 Sum_probs=103.6
Q ss_pred CCcEEEEEEEeeccCCccCccCCCCCCCCCeEEEEEECCE-EEEeecccCCCCCeeccEEEEEEeCCC--cEEEEEEEEC
Q 042999 616 PPVGILELGILGARGLLPMKTKNGGKGSTDAYCVAKYGKK-WVRTRTITDCFDPRWNEQYTWQVYDPC--TVLTVGVFDN 692 (1006)
Q Consensus 616 ~~~g~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~~~-~~rT~~~~~~~nP~wne~~~~~v~~~~--~~l~i~v~d~ 692 (1006)
...|.|.|+|++|+||. + . .|++||||++.+|++ ..||++++++.||+|||+|+|.+.+|. .+|+|+|||+
T Consensus 1977 ~~~G~L~V~V~~a~nl~--~---~-~~~sdPyv~l~~g~~~~~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~ 2050 (2102)
T PLN03200 1977 CLPGSLTVTIKRGNNLK--Q---S-MGNTNAFCKLTLGNGPPRQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSK 2050 (2102)
T ss_pred hCCcceEEEEeeccccc--c---c-cCCCCCeEEEEECCCCcccccccCCCCCCCcccceeeeecCCCCCCceEEEEEec
Confidence 45999999999999995 1 2 689999999999955 889999999999999999999998865 6899999999
Q ss_pred CCCCcCCCCCCCCceeEEEEEEcccccCCceEeeEEEeeeeccCCcccccE---EEEEEEEec
Q 042999 693 WRMFADASEERPDYRIGKIRIRVSTLENNKVYTTSYPLLVLLRTGLKKMGE---IELAVRFVC 752 (1006)
Q Consensus 693 ~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~---l~l~~~~~~ 752 (1006)
|.++ ++.||++.|++.++..++.++.||+|.++ | +|.|+ |+++++|+.
T Consensus 2051 d~f~--------kd~~G~~~i~l~~vv~~~~~~~~~~L~~~---~-~k~G~~~~~~~e~~w~~ 2101 (2102)
T PLN03200 2051 NTFG--------KSSLGKVTIQIDRVVMEGTYSGEYSLNPE---S-NKDGSSRTLEIEFQWSN 2101 (2102)
T ss_pred CccC--------CCCCceEEEEHHHHhcCceeeeeeecCcc---c-ccCCCcceEEEEEEecC
Confidence 9986 45999999999999999999999999752 2 24477 999998863
No 170
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=99.50 E-value=3.6e-13 Score=128.70 Aligned_cols=117 Identities=19% Similarity=0.289 Sum_probs=94.8
Q ss_pred EEEEEEeeccCCccCccCCCCCCCCCeEEEEEE------CCEEEEeecccCCC-CCeeccEEEEEEeCCC-cEEEEEEEE
Q 042999 620 ILELGILGARGLLPMKTKNGGKGSTDAYCVAKY------GKKWVRTRTITDCF-DPRWNEQYTWQVYDPC-TVLTVGVFD 691 (1006)
Q Consensus 620 ~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~------~~~~~rT~~~~~~~-nP~wne~~~~~v~~~~-~~l~i~v~d 691 (1006)
.|+|+|++|+||+.++. +. .+.+||||++++ .....||+++.++. ||.|||+|.|.+..+. ..|.|.|||
T Consensus 3 ~l~v~vi~a~~L~~~~~-~~-~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V~d 80 (128)
T cd00275 3 TLTIKIISGQQLPKPKG-DK-GSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYD 80 (128)
T ss_pred EEEEEEEeeecCCCCCC-CC-CCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEEEe
Confidence 68999999999988652 13 678999999998 35678999988876 9999999999998765 579999999
Q ss_pred CCCCCcCCCCCCCCceeEEEEEEcccccCCceEeeEEEeeeeccCCcccccEEEEEEEE
Q 042999 692 NWRMFADASEERPDYRIGKIRIRVSTLENNKVYTTSYPLLVLLRTGLKKMGEIELAVRF 750 (1006)
Q Consensus 692 ~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~l~l~~~~ 750 (1006)
++.. +|++||.+.+++.++..+ ..+++|.+..... ...|.|.+.+.+
T Consensus 81 ~~~~--------~~~~iG~~~~~l~~l~~g---~~~~~l~~~~~~~-~~~~~l~v~~~~ 127 (128)
T cd00275 81 EDSG--------DDDFLGQACLPLDSLRQG---YRHVPLLDSKGEP-LELSTLFVHIDI 127 (128)
T ss_pred CCCC--------CCcEeEEEEEEhHHhcCc---eEEEEecCCCCCC-CcceeEEEEEEE
Confidence 9864 488999999999999766 3688997654432 234899988875
No 171
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=99.50 E-value=1.3e-13 Score=133.51 Aligned_cols=102 Identities=22% Similarity=0.290 Sum_probs=85.9
Q ss_pred cCCceEEEEEEEEEeecCcccCCCCCCCCCCcEEEEEECC-----------------------------ccceeeeeecC
Q 042999 450 QSPKLWYLRVTVMEAQDLCIAHNLPPLTAPEIRVKAQLAL-----------------------------QSARTRRGSMN 500 (1006)
Q Consensus 450 ~~p~~~~L~V~v~~a~~L~~~~~~d~~~~~dpyv~v~lg~-----------------------------~~~kT~~~~~~ 500 (1006)
..|..+.|+|+|++|+||..+ |.+|.+||||+|.+++ +.++|+++.
T Consensus 23 ~~~~~~~L~V~vi~a~~L~~~---d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~-- 97 (153)
T cd08676 23 AEPPIFVLKVTVIEAKGLLAK---DVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKP-- 97 (153)
T ss_pred cCCCeEEEEEEEEeccCCccc---CCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceec--
Confidence 456788999999999999977 7889999999999963 235676654
Q ss_pred CCCCCceecceeeeeeccCCCCcEEEEEEECCCCccccceeEEEEEeccccccccccCcccceEEeC
Q 042999 501 NHSSSFHWHEDVFFVAAEPFEDSLILLVEDRTAKDAAAVILGHAVVPVSSIDQRIDERHVASKWFPL 567 (1006)
Q Consensus 501 ~~t~nP~w~e~~~f~v~~~~~~~L~v~V~D~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L 567 (1006)
+++||.|||.|.|.+.....+.|.|+|||++ +++||++.++++++... ....||.|
T Consensus 98 -~tlnP~WnE~F~f~v~~~~~~~L~i~V~D~d-----d~~IG~v~i~l~~l~~~-----~~d~W~~L 153 (153)
T cd08676 98 -QTLNPVWNETFRFEVEDVSNDQLHLDIWDHD-----DDFLGCVNIPLKDLPSC-----GLDSWFKL 153 (153)
T ss_pred -CCCCCccccEEEEEeccCCCCEEEEEEEecC-----CCeEEEEEEEHHHhCCC-----CCCCeEeC
Confidence 8999999999999998766778999999987 68999999999999831 24789986
No 172
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=99.49 E-value=3.4e-14 Score=137.00 Aligned_cols=107 Identities=30% Similarity=0.417 Sum_probs=89.2
Q ss_pred cccEEEEEEEEecCCCCCCCCCCCCcEEEEEEC--C---eEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEe
Q 042999 14 TVRKLVVEVVDARDLLPKDGQGSSSPYVIADFD--G---QRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYN 88 (1006)
Q Consensus 14 ~~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~--~---~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d 88 (1006)
..+.|.|+|++|+||+.++..|.+||||++.+. + .+.+|+++++++||.|||+|.|.+..... ....|.|+|||
T Consensus 13 ~~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~~-~~~~l~~~v~d 91 (136)
T cd08404 13 TTNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSEEL-EDISVEFLVLD 91 (136)
T ss_pred CCCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEECCHHHh-CCCEEEEEEEE
Confidence 356899999999999999988999999999984 2 25789999999999999999999865321 25679999999
Q ss_pred CCCCCCCCCCCCceeEEEEEeCeeeeeeCCceeEEEEceec
Q 042999 89 DKRYCNGSGRKNHFLGRVKLCGSQFARRGDEGLVYFPLEKK 129 (1006)
Q Consensus 89 ~d~~~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~ 129 (1006)
++.+ +++++||++.+++.. .+....+|++|...
T Consensus 92 ~d~~-----~~~~~iG~~~~~~~~---~~~~~~~w~~l~~~ 124 (136)
T cd08404 92 SDRV-----TKNEVIGRLVLGPKA---SGSGGHHWKEVCNP 124 (136)
T ss_pred CCCC-----CCCccEEEEEECCcC---CCchHHHHHHHHhC
Confidence 9998 789999999999887 23445578887654
No 173
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=99.49 E-value=1.4e-13 Score=131.90 Aligned_cols=95 Identities=29% Similarity=0.425 Sum_probs=83.0
Q ss_pred ccEEEEEEEEecCCCCCCCCCCCCcEEEEEEC-------CeEEEeeCcCCCCCCeeeeEEEEEeeCCC-CCCCceEEEEE
Q 042999 15 VRKLVVEVVDARDLLPKDGQGSSSPYVIADFD-------GQRKRTSTKFRDLNPVWNEPLEFIVSDPK-NMDCEELEIEV 86 (1006)
Q Consensus 15 ~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~-------~~~~kT~~~~~t~nP~wne~f~f~~~~~~-~~~~~~L~i~V 86 (1006)
.+.|.|+|++|++|+..+..|.+||||++++. ..+++|+++++|+||+|||+|.|.+.... ......|.|+|
T Consensus 15 ~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~~~~~~~~l~~~V 94 (133)
T cd04009 15 EQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPEQCSVEGALLLFTV 94 (133)
T ss_pred CCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEechhhcccCCCEEEEEE
Confidence 56899999999999999888999999999995 34689999999999999999999987632 12256899999
Q ss_pred EeCCCCCCCCCCCCceeEEEEEeCeeee
Q 042999 87 YNDKRYCNGSGRKNHFLGRVKLCGSQFA 114 (1006)
Q Consensus 87 ~d~d~~~~~~~~~d~~lG~~~v~l~~l~ 114 (1006)
||++.. +++++||++.++++++.
T Consensus 95 ~d~d~~-----~~d~~iG~~~i~l~~l~ 117 (133)
T cd04009 95 KDYDLL-----GSNDFEGEAFLPLNDIP 117 (133)
T ss_pred EecCCC-----CCCcEeEEEEEeHHHCC
Confidence 999998 78999999999999974
No 174
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.48 E-value=4.1e-13 Score=127.11 Aligned_cols=99 Identities=25% Similarity=0.338 Sum_probs=82.0
Q ss_pred cEEEEEEEeeccCCccCccCCCCCCCCCeEEEEEEC-----CEEEEeecccCCCCCeeccEEEEEEeCC----CcEEEEE
Q 042999 618 VGILELGILGARGLLPMKTKNGGKGSTDAYCVAKYG-----KKWVRTRTITDCFDPRWNEQYTWQVYDP----CTVLTVG 688 (1006)
Q Consensus 618 ~g~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~-----~~~~rT~~~~~~~nP~wne~~~~~v~~~----~~~l~i~ 688 (1006)
.+.|+|+|++|++|++.+ . .+.+||||++.+. ....||+++.++.||.|||.|.|..... ...|.|+
T Consensus 14 ~~~L~V~v~~a~~L~~~~---~-~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~~~~~l~~~ 89 (123)
T cd04035 14 NSALHCTIIRAKGLKAMD---A-NGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEEDIQRKTLRLL 89 (123)
T ss_pred CCEEEEEEEEeeCCCCCC---C-CCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHHHhCCCEEEEE
Confidence 468999999999998754 4 6789999999973 2468999999999999999999975442 4689999
Q ss_pred EEECCCCCcCCCCCCCCceeEEEEEEcccccCCceEeeEE
Q 042999 689 VFDNWRMFADASEERPDYRIGKIRIRVSTLENNKVYTTSY 728 (1006)
Q Consensus 689 v~d~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~ 728 (1006)
|||++.. .+++||.+.++|+++..+...+.++
T Consensus 90 v~d~~~~--------~~~~iG~~~i~l~~l~~~~~~~~~~ 121 (123)
T cd04035 90 VLDEDRF--------GNDFLGETRIPLKKLKPNQTKQFNI 121 (123)
T ss_pred EEEcCCc--------CCeeEEEEEEEcccCCCCcceEeec
Confidence 9999865 3789999999999999877444444
No 175
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=99.48 E-value=1.6e-13 Score=129.18 Aligned_cols=98 Identities=17% Similarity=0.194 Sum_probs=82.9
Q ss_pred EEeeccCCccCccCCCCCCCCCeEEEEEECCE-------EEEeecccCCCCCeeccEEEEEEeC-CCcEEEEEEEECCC-
Q 042999 624 GILGARGLLPMKTKNGGKGSTDAYCVAKYGKK-------WVRTRTITDCFDPRWNEQYTWQVYD-PCTVLTVGVFDNWR- 694 (1006)
Q Consensus 624 ~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~~~-------~~rT~~~~~~~nP~wne~~~~~v~~-~~~~l~i~v~d~~~- 694 (1006)
..++|++|++.+ . .|++||||++.+++. ..||+++++++||+|||.|.|.+.. ....|.|+|||+|.
T Consensus 5 ~~i~a~~L~~~d---~-~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~ 80 (120)
T cd04048 5 LSISCRNLLDKD---V-LSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEVQKLRFEVYDVDSK 80 (120)
T ss_pred EEEEccCCCCCC---C-CCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEeeeEEEEEEEEecCC
Confidence 458999998854 4 789999999999643 4799999999999999999998653 55689999999997
Q ss_pred ---CCcCCCCCCCCceeEEEEEEcccccCCceEeeEEEeee
Q 042999 695 ---MFADASEERPDYRIGKIRIRVSTLENNKVYTTSYPLLV 732 (1006)
Q Consensus 695 ---~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 732 (1006)
.+ +|++||.+.+++++|..+.....+++|..
T Consensus 81 ~~~~~-------~~d~iG~~~i~l~~l~~~~~~~~~~~l~~ 114 (120)
T cd04048 81 SKDLS-------DHDFLGEAECTLGEIVSSPGQKLTLPLKG 114 (120)
T ss_pred cCCCC-------CCcEEEEEEEEHHHHhcCCCcEEEEEccC
Confidence 55 79999999999999987765678898843
No 176
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.48 E-value=2.1e-13 Score=128.86 Aligned_cols=89 Identities=27% Similarity=0.378 Sum_probs=79.7
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEECCeE--EEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEeCCCCCC
Q 042999 17 KLVVEVVDARDLLPKDGQGSSSPYVIADFDGQR--KRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYNDKRYCN 94 (1006)
Q Consensus 17 ~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~~~--~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~d~~~~ 94 (1006)
.|+|.|++|++|...+..|.+||||++.++++. .+|+++++++||+|||+|.|.+..+. ...|.|+|||++..
T Consensus 1 ~lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~~kT~~v~~t~nP~Wne~f~f~~~~~~---~~~L~~~V~d~d~~-- 75 (124)
T cd04037 1 LVRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEATLPG---NSILKISVMDYDLL-- 75 (124)
T ss_pred CEEEEEEECcCCCCCCCCCCCCcEEEEEECCeeccceeeEEECCCCCccceEEEEEecCCC---CCEEEEEEEECCCC--
Confidence 478999999999999988999999999998765 57888889999999999999986543 46899999999998
Q ss_pred CCCCCCceeEEEEEeCeee
Q 042999 95 GSGRKNHFLGRVKLCGSQF 113 (1006)
Q Consensus 95 ~~~~~d~~lG~~~v~l~~l 113 (1006)
++|++||++.+++++.
T Consensus 76 ---~~dd~iG~~~i~l~~~ 91 (124)
T cd04037 76 ---GSDDLIGETVIDLEDR 91 (124)
T ss_pred ---CCCceeEEEEEeeccc
Confidence 7899999999999984
No 177
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=99.48 E-value=1.8e-13 Score=131.94 Aligned_cols=107 Identities=32% Similarity=0.421 Sum_probs=88.2
Q ss_pred cccEEEEEEEEecCCCCCCCCCCCCcEEEEEEC--C---eEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEe
Q 042999 14 TVRKLVVEVVDARDLLPKDGQGSSSPYVIADFD--G---QRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYN 88 (1006)
Q Consensus 14 ~~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~--~---~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d 88 (1006)
..+.|.|+|++|++|+.++..|.+||||++.+. + .+++|+++++++||.|||+|.|.+.... +....|.|+|||
T Consensus 13 ~~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~-l~~~~l~~~v~d 91 (136)
T cd08402 13 TAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPFEQ-IQKVHLIVTVLD 91 (136)
T ss_pred CCCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEECCHHH-hCCCEEEEEEEe
Confidence 357899999999999999988999999999994 2 3578999999999999999999986532 224579999999
Q ss_pred CCCCCCCCCCCCceeEEEEEeCeeeeeeCCceeEEEEceec
Q 042999 89 DKRYCNGSGRKNHFLGRVKLCGSQFARRGDEGLVYFPLEKK 129 (1006)
Q Consensus 89 ~d~~~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~ 129 (1006)
++.+ +++++||++.+++.. .+....+|+++...
T Consensus 92 ~~~~-----~~~~~iG~~~i~~~~---~~~~~~~W~~~~~~ 124 (136)
T cd08402 92 YDRI-----GKNDPIGKVVLGCNA---TGAELRHWSDMLAS 124 (136)
T ss_pred CCCC-----CCCceeEEEEECCcc---CChHHHHHHHHHhC
Confidence 9998 789999999999875 24444568877543
No 178
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=99.47 E-value=8.8e-14 Score=134.14 Aligned_cols=104 Identities=22% Similarity=0.291 Sum_probs=88.1
Q ss_pred CcEEEEEEEeeccCCccCccCCCCCCCCCeEEEEEECC-----EEEEeecccCCCCCeeccEEEEEEeCC---CcEEEEE
Q 042999 617 PVGILELGILGARGLLPMKTKNGGKGSTDAYCVAKYGK-----KWVRTRTITDCFDPRWNEQYTWQVYDP---CTVLTVG 688 (1006)
Q Consensus 617 ~~g~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~~-----~~~rT~~~~~~~nP~wne~~~~~v~~~---~~~l~i~ 688 (1006)
..|.|.|.|++|+||++.+ . .+.+||||++.+.+ ...+|+++.++.||.|||+|.|.+... ...|.|+
T Consensus 12 ~~~~L~V~v~~a~~L~~~~---~-~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~l~~~~l~~~ 87 (134)
T cd00276 12 TAERLTVVVLKARNLPPSD---G-KGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQLEEVSLVIT 87 (134)
T ss_pred CCCEEEEEEEEeeCCCCcc---C-CCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHHHhCCcEEEEE
Confidence 3478999999999998854 3 77899999999853 256899999999999999999998764 4789999
Q ss_pred EEECCCCCcCCCCCCCCceeEEEEEEcccccCCceEeeEEEeeee
Q 042999 689 VFDNWRMFADASEERPDYRIGKIRIRVSTLENNKVYTTSYPLLVL 733 (1006)
Q Consensus 689 v~d~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~ 733 (1006)
|||.+..+ ++++||.+.|++.+ .+...++|++|...
T Consensus 88 v~d~~~~~-------~~~~lG~~~i~l~~--~~~~~~~W~~l~~~ 123 (134)
T cd00276 88 VVDKDSVG-------RNEVIGQVVLGPDS--GGEELEHWNEMLAS 123 (134)
T ss_pred EEecCCCC-------CCceeEEEEECCCC--CCcHHHHHHHHHhC
Confidence 99999876 78999999999999 45555899999764
No 179
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=99.47 E-value=1.3e-13 Score=132.62 Aligned_cols=104 Identities=18% Similarity=0.268 Sum_probs=85.1
Q ss_pred CcEEEEEEEeeccCCccCccCCCCCCCCCeEEEEEECC-----EEEEeecccCCCCCeeccEEEEEEeC---CCcEEEEE
Q 042999 617 PVGILELGILGARGLLPMKTKNGGKGSTDAYCVAKYGK-----KWVRTRTITDCFDPRWNEQYTWQVYD---PCTVLTVG 688 (1006)
Q Consensus 617 ~~g~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~~-----~~~rT~~~~~~~nP~wne~~~~~v~~---~~~~l~i~ 688 (1006)
..+.|.|+|++|+||++++ .+.+||||++.+.. ...||++++++.||+|||.|.|.+.. ....|.|+
T Consensus 13 ~~~~L~V~V~~a~nL~~~~-----~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~~l~~~~L~~~ 87 (137)
T cd08409 13 TLNRLTVVVLRARGLRQLD-----HAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTSRQLDTASLSLS 87 (137)
T ss_pred CCCeEEEEEEEecCCCccc-----CCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEECCHHHhCccEEEEE
Confidence 3468999999999998864 45689999999742 35689999999999999999999853 33589999
Q ss_pred EEECCCCCcCCCCCCCCceeEEEEEEcccccCCceEeeEEEeee
Q 042999 689 VFDNWRMFADASEERPDYRIGKIRIRVSTLENNKVYTTSYPLLV 732 (1006)
Q Consensus 689 v~d~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 732 (1006)
|||.+..+ ++++||++.|.......+...++|..+..
T Consensus 88 V~~~~~~~-------~~~~lG~v~ig~~~~~~~~~~~hW~~~~~ 124 (137)
T cd08409 88 VMQSGGVR-------KSKLLGRVVLGPFMYARGKELEHWNDMLS 124 (137)
T ss_pred EEeCCCCC-------CcceEEEEEECCcccCCChHHHHHHHHHh
Confidence 99999876 79999999999766666665677877754
No 180
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=99.47 E-value=2.2e-13 Score=130.57 Aligned_cols=106 Identities=32% Similarity=0.522 Sum_probs=91.3
Q ss_pred cEEEEEEEEecCCCCCCCCCCCCcEEEEEECC-----eEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEeCC
Q 042999 16 RKLVVEVVDARDLLPKDGQGSSSPYVIADFDG-----QRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYNDK 90 (1006)
Q Consensus 16 ~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~-----~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~d 90 (1006)
+.|.|+|++|++|+..+..+.+||||++.+.+ ..++|++++++.||.|||+|.|.+.... ....|.|+|||++
T Consensus 13 ~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~--~~~~l~v~v~d~~ 90 (131)
T cd04026 13 NKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPAD--KDRRLSIEVWDWD 90 (131)
T ss_pred CEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchh--cCCEEEEEEEECC
Confidence 68999999999999988888999999999962 6799999999999999999999987642 1468999999999
Q ss_pred CCCCCCCCCCceeEEEEEeCeeeeeeCCceeEEEEceecC
Q 042999 91 RYCNGSGRKNHFLGRVKLCGSQFARRGDEGLVYFPLEKKS 130 (1006)
Q Consensus 91 ~~~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~ 130 (1006)
.. +++++||++.++++++... ....||+|.+..
T Consensus 91 ~~-----~~~~~iG~~~~~l~~l~~~--~~~~w~~L~~~~ 123 (131)
T cd04026 91 RT-----TRNDFMGSLSFGVSELIKM--PVDGWYKLLNQE 123 (131)
T ss_pred CC-----CCcceeEEEEEeHHHhCcC--ccCceEECcCcc
Confidence 88 6899999999999997533 456799997643
No 181
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.47 E-value=6.3e-14 Score=134.46 Aligned_cols=107 Identities=19% Similarity=0.287 Sum_probs=88.1
Q ss_pred cccEEEEEEEEecCCCCCCCCCCCCcEEEEEEC---C---eEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEE
Q 042999 14 TVRKLVVEVVDARDLLPKDGQGSSSPYVIADFD---G---QRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVY 87 (1006)
Q Consensus 14 ~~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~---~---~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~ 87 (1006)
..+.|.|+|++|+||..++..|.+||||++.+. + .+++|++++++.||+|||+|.|.+... ++....|.|.||
T Consensus 13 ~~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~-~l~~~~L~~~V~ 91 (138)
T cd08408 13 LTGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVALF-QLSEVTLMFSVY 91 (138)
T ss_pred CCCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCHH-HhCccEEEEEEE
Confidence 457899999999999999989999999999994 2 247999999999999999999998763 233678999999
Q ss_pred eCCCCCCCCCCCCceeEEEEEeCeeeeeeCCceeEEEEcee
Q 042999 88 NDKRYCNGSGRKNHFLGRVKLCGSQFARRGDEGLVYFPLEK 128 (1006)
Q Consensus 88 d~d~~~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~ 128 (1006)
|++.+ +++++||++.+++... ......+|..+..
T Consensus 92 ~~~~~-----~~~~~iG~v~l~~~~~--~~~~~~hW~~~l~ 125 (138)
T cd08408 92 NKRKM-----KRKEMIGWFSLGLNSS--GEEEEEHWNEMKE 125 (138)
T ss_pred ECCCC-----CCCcEEEEEEECCcCC--CchHHHHHHHHHh
Confidence 99998 7999999999987752 1123346877654
No 182
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=99.46 E-value=1.8e-13 Score=127.99 Aligned_cols=105 Identities=17% Similarity=0.238 Sum_probs=85.2
Q ss_pred cccEEEEEEEEecCCCCCCCCCCCCcEEEEEEC-----CeEEEeeCcCCCC-CCeeeeEEEEEeeCCCCCCCceEEEEEE
Q 042999 14 TVRKLVVEVVDARDLLPKDGQGSSSPYVIADFD-----GQRKRTSTKFRDL-NPVWNEPLEFIVSDPKNMDCEELEIEVY 87 (1006)
Q Consensus 14 ~~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~-----~~~~kT~~~~~t~-nP~wne~f~f~~~~~~~~~~~~L~i~V~ 87 (1006)
..+.|.|+|++|+||++.+..+.+||||+|++- -.++||+++++|+ ||+|||+|.|.+... +. +..|.|+||
T Consensus 12 ~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~-~~-~v~l~v~v~ 89 (135)
T cd08692 12 VNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQ-EH-GIQFLIKLY 89 (135)
T ss_pred cCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEeCCch-hh-eeEEEEEEE
Confidence 457899999999999988666778999999983 2468999999995 699999999999874 33 578999999
Q ss_pred eCCCCCCCCCCCCceeEEEEEeCeeeeeeCCceeEEEEce
Q 042999 88 NDKRYCNGSGRKNHFLGRVKLCGSQFARRGDEGLVYFPLE 127 (1006)
Q Consensus 88 d~d~~~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~ 127 (1006)
|++.. +++++||++.++.+.. .+....+|.++.
T Consensus 90 d~~~~-----~~n~~IG~v~lG~~~~--~~~~~~hW~~m~ 122 (135)
T cd08692 90 SRSSV-----RRKHFLGQVWISSDSS--SSEAVEQWKDTI 122 (135)
T ss_pred eCCCC-----cCCceEEEEEECCccC--CchhhhhHHHHH
Confidence 99988 7999999999998752 223345676654
No 183
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=99.46 E-value=8.4e-14 Score=133.70 Aligned_cols=107 Identities=24% Similarity=0.407 Sum_probs=85.8
Q ss_pred ccEEEEEEEEecCCCCCCCCCCCCcEEEEEEC-C----eEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEeC
Q 042999 15 VRKLVVEVVDARDLLPKDGQGSSSPYVIADFD-G----QRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYND 89 (1006)
Q Consensus 15 ~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~-~----~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~ 89 (1006)
.+.|.|+|++|++|+.++..|.+||||++.+. + .+++|+++++++||+|||+|.|.+.... .....|.|+|||+
T Consensus 13 ~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~~-l~~~~l~~~V~d~ 91 (135)
T cd08410 13 AGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQEE-LENVSLVFTVYGH 91 (135)
T ss_pred CCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEeCCHHH-hCCCEEEEEEEeC
Confidence 46899999999999999988999999999983 2 3579999999999999999999986532 2244799999999
Q ss_pred CCCCCCCCCCCceeEEEEEeCeeeeeeCCceeEEEEceec
Q 042999 90 KRYCNGSGRKNHFLGRVKLCGSQFARRGDEGLVYFPLEKK 129 (1006)
Q Consensus 90 d~~~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~ 129 (1006)
+.. +++++||++.+.... ..+....+|+.|...
T Consensus 92 d~~-----~~~~~iG~~~l~~~~--~~~~~~~~W~~l~~~ 124 (135)
T cd08410 92 NVK-----SSNDFIGRIVIGQYS--SGPSETNHWRRMLNS 124 (135)
T ss_pred CCC-----CCCcEEEEEEEcCcc--CCchHHHHHHHHHhC
Confidence 998 799999999876433 222234578877654
No 184
>PLN03008 Phospholipase D delta
Probab=99.46 E-value=3e-13 Score=157.98 Aligned_cols=125 Identities=22% Similarity=0.281 Sum_probs=105.2
Q ss_pred ccEEEEEEEEecCCCCCCC------------------------------------------CCCCCcEEEEEECCeE-EE
Q 042999 15 VRKLVVEVVDARDLLPKDG------------------------------------------QGSSSPYVIADFDGQR-KR 51 (1006)
Q Consensus 15 ~~~L~V~v~~a~~L~~~~~------------------------------------------~g~~dPyv~v~~~~~~-~k 51 (1006)
-|.|.++|.+|++|+.+|. .+++||||+|.+++++ .|
T Consensus 13 hg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tSDPYV~I~Lg~~rv~R 92 (868)
T PLN03008 13 HGDLDLKIVKARRLPNMDMFSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDKNIRSHRKVITSDPYVTVVVPQATLAR 92 (868)
T ss_pred ecccEEEEEEcccCCchhHHHHHHHhhcccccccccccccccccccccccccccccccccccCCCCceEEEEECCcceee
Confidence 3678999999999985221 2478999999998764 69
Q ss_pred eeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEeCCCCCCCCCCCCceeEEEEEeCeeeeeeCCceeEEEEceecCC
Q 042999 52 TSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYNDKRYCNGSGRKNHFLGRVKLCGSQFARRGDEGLVYFPLEKKSV 131 (1006)
Q Consensus 52 T~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~d~~~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~~ 131 (1006)
|+++++++||+|||+|.|.+.++ ...|.|+|||+|.+ ++++||++.++++++ ..+.....|++|.+...
T Consensus 93 TrVi~n~~NPvWNE~F~f~vah~----~s~L~f~VkD~D~~------gaD~IG~a~IPL~~L-~~Ge~vd~Wl~Ll~~~~ 161 (868)
T PLN03008 93 TRVLKNSQEPLWDEKFNISIAHP----FAYLEFQVKDDDVF------GAQIIGTAKIPVRDI-ASGERISGWFPVLGASG 161 (868)
T ss_pred EEeCCCCCCCCcceeEEEEecCC----CceEEEEEEcCCcc------CCceeEEEEEEHHHc-CCCCceEEEEEccccCC
Confidence 99999999999999999999885 45899999999999 469999999999995 66777789999986543
Q ss_pred c-eeeeEEEEEEEEEEecCc
Q 042999 132 F-SWIRGEIGLRIYYYDELS 150 (1006)
Q Consensus 132 ~-~~~~G~i~l~~~~~~~~~ 150 (1006)
+ .+..|+|+|++.|.+...
T Consensus 162 kp~k~~~kl~v~lqf~pv~~ 181 (868)
T PLN03008 162 KPPKAETAIFIDMKFTPFDQ 181 (868)
T ss_pred CCCCCCcEEEEEEEEEEccc
Confidence 3 345689999999999875
No 185
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=99.45 E-value=8.1e-13 Score=123.65 Aligned_cols=94 Identities=17% Similarity=0.212 Sum_probs=73.0
Q ss_pred CCceEEEEEEEEEeecCcccCCCCCCCCCCcEEEEEEC--C---ccceeeeeecCCCCC-CceecceeeeeeccCCCC-c
Q 042999 451 SPKLWYLRVTVMEAQDLCIAHNLPPLTAPEIRVKAQLA--L---QSARTRRGSMNNHSS-SFHWHEDVFFVAAEPFED-S 523 (1006)
Q Consensus 451 ~p~~~~L~V~v~~a~~L~~~~~~d~~~~~dpyv~v~lg--~---~~~kT~~~~~~~~t~-nP~w~e~~~f~v~~~~~~-~ 523 (1006)
.|..+.|+|.|++|+||+.+ +..+.+||||+|.+- + .+.||++++ +|+ ||.|||.|.|.+..+..+ .
T Consensus 10 ~p~~~rLtV~VikarnL~~~---~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k---~t~~~P~fNEsF~Fdv~~~~~~v~ 83 (135)
T cd08692 10 QAVNSRIQLQILEAQNLPSS---STPLTLSFFVKVGMFSTGGLLYKKKTRLVK---SSNGQVKWGETMIFPVTQQEHGIQ 83 (135)
T ss_pred cCcCCeEEEEEEEccCCCcc---cCCCCCCcEEEEEEEECCCcceeecCccEE---CCCCCceecceEEEeCCchhheeE
Confidence 34455699999999999976 556677999999882 2 345566544 774 699999999998865433 6
Q ss_pred EEEEEEECCCCccccceeEEEEEecccc
Q 042999 524 LILLVEDRTAKDAAAVILGHAVVPVSSI 551 (1006)
Q Consensus 524 L~v~V~D~~~~~~~d~~lG~~~i~l~~l 551 (1006)
|.|.|||++..+ ++++||++.+.....
T Consensus 84 l~v~v~d~~~~~-~n~~IG~v~lG~~~~ 110 (135)
T cd08692 84 FLIKLYSRSSVR-RKHFLGQVWISSDSS 110 (135)
T ss_pred EEEEEEeCCCCc-CCceEEEEEECCccC
Confidence 889999998644 589999999999764
No 186
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.44 E-value=1.2e-13 Score=133.10 Aligned_cols=106 Identities=29% Similarity=0.415 Sum_probs=87.1
Q ss_pred cccEEEEEEEEecCCCCCCCCCCCCcEEEEEEC--C---eEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEe
Q 042999 14 TVRKLVVEVVDARDLLPKDGQGSSSPYVIADFD--G---QRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYN 88 (1006)
Q Consensus 14 ~~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~--~---~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d 88 (1006)
..+.|.|+|++|+||...+..|.+||||++.+. + .+++|++++++.||+|||+|.|.+.... .....|.|+|||
T Consensus 13 ~~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~i~~~~-~~~~~l~~~v~d 91 (136)
T cd08405 13 TANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIPLER-LRETTLIITVMD 91 (136)
T ss_pred CCCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEeCCHHH-hCCCEEEEEEEE
Confidence 357899999999999998888999999999983 2 3578999999999999999999976421 124579999999
Q ss_pred CCCCCCCCCCCCceeEEEEEeCeeeeeeCCceeEEEEcee
Q 042999 89 DKRYCNGSGRKNHFLGRVKLCGSQFARRGDEGLVYFPLEK 128 (1006)
Q Consensus 89 ~d~~~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~ 128 (1006)
++.+ +++++||++.+++.+. +.....|++|..
T Consensus 92 ~~~~-----~~~~~lG~~~i~~~~~---~~~~~~w~~~~~ 123 (136)
T cd08405 92 KDRL-----SRNDLIGKIYLGWKSG---GLELKHWKDMLS 123 (136)
T ss_pred CCCC-----CCCcEeEEEEECCccC---CchHHHHHHHHh
Confidence 9998 7899999999999873 334456776654
No 187
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=99.44 E-value=3.6e-13 Score=155.98 Aligned_cols=384 Identities=16% Similarity=0.145 Sum_probs=220.9
Q ss_pred EEEEEEEeeCCCC-----CCCcEEEEEECCeeeeeeEeeccCCCCCCCCeeceEEEEeccCC----C---CCCCEEEEEE
Q 042999 298 LFVKIRKARGLVP-----NEAPYVKIRTSSHYKKSKLASYRACDPHDSPEWNQVFALFHNKN----D---SVSATLEITV 365 (1006)
Q Consensus 298 l~V~v~~a~~l~~-----~~dpyv~v~~~~~~~~T~~~~~~~~~~~~nP~wne~f~f~~~~~----~---~~~~~l~i~V 365 (1006)
+++.+.+|+.|.+ .+|||+.+.+-++...|-++ .+|+||.|+++..|.-.+. . .....+.++|
T Consensus 208 lR~yiyQar~L~a~dk~~~sdp~a~v~f~~qs~~T~~v-----~~tl~ptwdq~~~f~~~ei~ge~~~~~~~ppi~v~e~ 282 (1105)
T KOG1326|consen 208 LRSYIYQARALGAPDKDDESDPDAAVEFCGQSKETEVV-----PGTLNPTWDQTIIFDEVEIYGEAHLVLKNPPIRVFEV 282 (1105)
T ss_pred hHHHHHHHHhhcCCCcccCCCchhhhhcccccceeEee-----cCcCCCCccceeeccceeecCccchhhcCCCeEEEEe
Confidence 3455567777764 35999999999999999999 9999999999999853322 1 1246788999
Q ss_pred EcCCC---CCccEEEEEeCCcCCCCCCCCCCCcceeEEcccCCCCCCcceeeEEEEEEEeecCCCCcCccccCCCCCCcc
Q 042999 366 WDSPT---ENFLGGVCFDLSDVPVRDPPDSPLAPQWYRLEGEASDQNNRVSGDIQLAVWIGTQADEAFPEAWSSDAPYVT 442 (1006)
Q Consensus 366 ~D~~~---d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~~~g~l~~~~~~~~~~d~~~~~~~~~~~~~~~ 442 (1006)
+|.++ ++++|+......-... +-.-.|+++.... ...|++.++.-.--..- +-.+........
T Consensus 283 yd~dr~g~~ef~gr~~~~p~V~~~------~p~lkw~p~~rg~-----~l~gd~l~a~eliq~~~---~i~~p~~~~~~~ 348 (1105)
T KOG1326|consen 283 YDLDRSGINEFKGRKKQRPYVMVQ------CPALKWVPTMRGA-----FLDGDVLIAAELIQIGK---PIPQPPPQREII 348 (1105)
T ss_pred ehhhhhchHHhhcccccceEEEec------CCccceEEeeccc-----ccccchhHHHHHHhhcC---CCCCCCcccccc
Confidence 99874 8999997654433222 1123788887653 34555543320000000 111111100000
Q ss_pred ccccccccCCceEE--EEEEEEEeecCcccCCCCCCCCCCcEEEEEECCccceeeeeecCCCCCCceecceeeee-eccC
Q 042999 443 HTRSKVYQSPKLWY--LRVTVMEAQDLCIAHNLPPLTAPEIRVKAQLALQSARTRRGSMNNHSSSFHWHEDVFFV-AAEP 519 (1006)
Q Consensus 443 ~~~~~~~~~p~~~~--L~V~v~~a~~L~~~~~~d~~~~~dpyv~v~lg~~~~kT~~~~~~~~t~nP~w~e~~~f~-v~~~ 519 (1006)
.....-...|.+.. +.|-...-+|+... .......|-+.+.+|++..++..+. ..-.||.|...+.+. |..|
T Consensus 349 ~~~vp~~iRp~~q~~~~evl~wgLrn~k~~---~m~~~~~P~~~~e~g~e~v~s~~I~--~~k~npnf~s~~~~~~v~lp 423 (1105)
T KOG1326|consen 349 FSLVPKKIRPKTQIGKAELLMWGLRNPKKS---GMASTFSPALLVEFGGERVSSFSIF--NRKKNPNFPSRVLGRLVILP 423 (1105)
T ss_pred eeccccCCCcceeeeeeehhhhhhcccccc---cccccCCcceeEeeCCceEeeeeeh--hhhhCCCCceeEEEEEEecc
Confidence 00000011222222 33332223444322 3344567888889999988888775 455688888765443 3333
Q ss_pred C----CCcEEEEEEECCCCccccceeEEEEEeccc-ccccc-c-c----------------------CcccceEEeCcCC
Q 042999 520 F----EDSLILLVEDRTAKDAAAVILGHAVVPVSS-IDQRI-D-E----------------------RHVASKWFPLEGS 570 (1006)
Q Consensus 520 ~----~~~L~v~V~D~~~~~~~d~~lG~~~i~l~~-l~~~~-~-~----------------------~~~~~~w~~L~~~ 570 (1006)
. ...+.+.|.|.+..+ .-.++|+|.+.-.. ..-++ . + +.....|+.....
T Consensus 424 d~e~Y~ppl~akvvd~~~fg-~~~v~g~c~i~~l~nf~c~p~~~~~~~Pq~~~d~~~~~~~~~~~~~~~~~~~~l~~~~~ 502 (1105)
T KOG1326|consen 424 DEELYMPPLNAKVVDLRQFG-RMEVVGQCKILSLYNFFCDPSAVNSITPQFASDPVSIMMGSTDNEIRHCNSSTLPASPH 502 (1105)
T ss_pred chHhhCccceeEEEeccccc-ceeehhhhcchhhhhhccCchhhcccCcCCCCCchhhhcCCchhhhhhccccCCCCCcc
Confidence 3 237899999998654 57788888875322 11000 0 0 0000011111110
Q ss_pred CC-----------------CC-Cccc--eeeeEEEEEeee----------------------CCc--ccccccc------
Q 042999 571 CG-----------------RG-CARS--YCGRIQLKLCLE----------------------GGY--HVLDEAA------ 600 (1006)
Q Consensus 571 ~~-----------------~~-~~~~--~~G~l~l~v~l~----------------------~~~--~~~d~~~------ 600 (1006)
.. .+ +... .+....+.|+-. |.. .-.++..
T Consensus 503 ~~~~e~~~~~w~k~~~~~~~~~k~~~~~~K~~~~LKiyn~ele~v~ef~~l~D~~~~f~l~rG~~~~e~~e~~Ivg~fKg 582 (1105)
T KOG1326|consen 503 EDEEEREVDWWGKFYPSAEENAKWEVYEHKINVTLKIYNMELEMVAEFRGLQDWAVTFKLYRGKEGLECLEQQIVGEFKG 582 (1105)
T ss_pred ccccceehhhhhhccccccccccccccccccceEEEEehhhhhhHHHHhhhhhccceeEeeeccccCCCcccchhhhhhc
Confidence 00 00 1111 111122332210 000 0000000
Q ss_pred ----ccCC-CC-Ccc-ccc---cC--CCCcEEEEEEEeeccCCccCccCCCCCCCCCeEEEEEECCEEE--EeecccCCC
Q 042999 601 ----HVCS-DF-RPT-AKQ---LW--KPPVGILELGILGARGLLPMKTKNGGKGSTDAYCVAKYGKKWV--RTRTITDCF 666 (1006)
Q Consensus 601 ----~~~~-~~-~p~-~~~---l~--~~~~g~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~~~~~--rT~~~~~~~ 666 (1006)
+..+ +. .|. .++ +- .+-.-.++|.|++|.+|.+. |. +|.+|||+++.+|++.. ++..+.+|+
T Consensus 583 l~rIyp~~~~~~~p~~pr~~~~~~~~~pi~~LvrVyvv~A~~L~p~---D~-ng~adpYv~l~lGk~~~~d~~~yip~tl 658 (1105)
T KOG1326|consen 583 LFRIYPVPRNPSSPAPPRHFLDLPKEEPIKCLVRVYVVEAFSLQPS---DG-NGDADPYVKLLLGKKRTLDRAHYIPNTL 658 (1105)
T ss_pred ceeeecCCCccCCCCChhhhhcccccCcceeeEEEEEEEeeecccc---CC-CCCcCceeeeeeccchhhhhhhcCcCCC
Confidence 0000 00 000 011 10 13345678999999999884 56 99999999999999885 667899999
Q ss_pred CCeeccEEEEEEeCCC-cEEEEEEEECCCCCcCCCCCCCCceeEEEEEEccc
Q 042999 667 DPRWNEQYTWQVYDPC-TVLTVGVFDNWRMFADASEERPDYRIGKIRIRVST 717 (1006)
Q Consensus 667 nP~wne~~~~~v~~~~-~~l~i~v~d~~~~~~~~~~~~~d~~lG~~~i~l~~ 717 (1006)
||++.+.|++....|. ..++++|||+|..+ .|+.+|...|.|..
T Consensus 659 nPVfgkmfel~~~lp~ek~l~v~vyd~D~~~-------~d~~iget~iDLEn 703 (1105)
T KOG1326|consen 659 NPVFGKMFELECLLPFEKDLIVEVYDHDLEA-------QDEKIGETTIDLEN 703 (1105)
T ss_pred CcHHHHHHHhhcccchhhcceeEEEEeeccc-------ccchhhceehhhhh
Confidence 9999999999988865 47899999999987 89999999999863
No 188
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=99.44 E-value=1.5e-12 Score=124.48 Aligned_cols=117 Identities=24% Similarity=0.352 Sum_probs=95.7
Q ss_pred cEEEEEEEEecCCCCCC--CCCCCCcEEEEEEC------CeEEEeeCcCCCC-CCeeeeEEEEEeeCCCCCCCceEEEEE
Q 042999 16 RKLVVEVVDARDLLPKD--GQGSSSPYVIADFD------GQRKRTSTKFRDL-NPVWNEPLEFIVSDPKNMDCEELEIEV 86 (1006)
Q Consensus 16 ~~L~V~v~~a~~L~~~~--~~g~~dPyv~v~~~------~~~~kT~~~~~t~-nP~wne~f~f~~~~~~~~~~~~L~i~V 86 (1006)
..|+|+|++|++|+..+ ..+.+||||++++. ..+.+|+++.++. ||.|||+|.|.+.... ...|.|+|
T Consensus 2 ~~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~---~~~l~~~V 78 (128)
T cd00275 2 LTLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPE---LAFLRFVV 78 (128)
T ss_pred eEEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCC---eEEEEEEE
Confidence 47999999999999887 47889999999993 4568999987765 9999999999988643 35799999
Q ss_pred EeCCCCCCCCCCCCceeEEEEEeCeeeeeeCCceeEEEEceecCCceeeeEEEEEEEEE
Q 042999 87 YNDKRYCNGSGRKNHFLGRVKLCGSQFARRGDEGLVYFPLEKKSVFSWIRGEIGLRIYY 145 (1006)
Q Consensus 87 ~d~d~~~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~ 145 (1006)
||++.. ++++||.+.++++++ ..+ ..|++|.+........|.|.+.+.+
T Consensus 79 ~d~~~~------~~~~iG~~~~~l~~l-~~g---~~~~~l~~~~~~~~~~~~l~v~~~~ 127 (128)
T cd00275 79 YDEDSG------DDDFLGQACLPLDSL-RQG---YRHVPLLDSKGEPLELSTLFVHIDI 127 (128)
T ss_pred EeCCCC------CCcEeEEEEEEhHHh-cCc---eEEEEecCCCCCCCcceeEEEEEEE
Confidence 999876 789999999999986 332 3688988655444457999988865
No 189
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=99.43 E-value=5.3e-13 Score=125.64 Aligned_cols=99 Identities=22% Similarity=0.311 Sum_probs=83.1
Q ss_pred EEEEecCCCCCCCCCCCCcEEEEEECCe-------EEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEeCCC--
Q 042999 21 EVVDARDLLPKDGQGSSSPYVIADFDGQ-------RKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYNDKR-- 91 (1006)
Q Consensus 21 ~v~~a~~L~~~~~~g~~dPyv~v~~~~~-------~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~d~-- 91 (1006)
-.++|++|+.++..|.+||||++++.+. .++|+++++++||+|||+|.|.+.... ...|.|+|||++.
T Consensus 5 ~~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~---~~~l~~~V~d~d~~~ 81 (120)
T cd04048 5 LSISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEE---VQKLRFEVYDVDSKS 81 (120)
T ss_pred EEEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEe---eeEEEEEEEEecCCc
Confidence 4588999999998899999999999754 389999999999999999999865432 4589999999997
Q ss_pred --CCCCCCCCCceeEEEEEeCeeeeeeCCceeEEEEcee
Q 042999 92 --YCNGSGRKNHFLGRVKLCGSQFARRGDEGLVYFPLEK 128 (1006)
Q Consensus 92 --~~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~ 128 (1006)
. +++++||++.+++++++. +.....|++|..
T Consensus 82 ~~~-----~~~d~iG~~~i~l~~l~~-~~~~~~~~~l~~ 114 (120)
T cd04048 82 KDL-----SDHDFLGEAECTLGEIVS-SPGQKLTLPLKG 114 (120)
T ss_pred CCC-----CCCcEEEEEEEEHHHHhc-CCCcEEEEEccC
Confidence 6 689999999999999754 334456888843
No 190
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.43 E-value=7.8e-13 Score=126.91 Aligned_cols=104 Identities=14% Similarity=0.157 Sum_probs=84.9
Q ss_pred CcEEEEEEEeeccCCccCccCCCCCCCCCeEEEEEEC---C---EEEEeecccCCCCCeeccEEEEEEeC---CCcEEEE
Q 042999 617 PVGILELGILGARGLLPMKTKNGGKGSTDAYCVAKYG---K---KWVRTRTITDCFDPRWNEQYTWQVYD---PCTVLTV 687 (1006)
Q Consensus 617 ~~g~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~---~---~~~rT~~~~~~~nP~wne~~~~~v~~---~~~~l~i 687 (1006)
..|.|.|+|++|+||++++ . .|.+||||++.+. + .+.||++++++.||+|||+|.|++.. ....|.|
T Consensus 13 ~~~~L~V~VikarnL~~~~---~-~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~~l~~~~L~~ 88 (138)
T cd08408 13 LTGRLSVEVIKGSNFKNLA---M-NKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVALFQLSEVTLMF 88 (138)
T ss_pred CCCeEEEEEEEecCCCccc---c-CCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCHHHhCccEEEE
Confidence 5689999999999999864 4 7789999999983 2 25699999999999999999999874 4458999
Q ss_pred EEEECCCCCcCCCCCCCCceeEEEEEEcccccCCceEeeEEEeee
Q 042999 688 GVFDNWRMFADASEERPDYRIGKIRIRVSTLENNKVYTTSYPLLV 732 (1006)
Q Consensus 688 ~v~d~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 732 (1006)
+|||.+.++ ++++||.+.|++.....+ ..++|+.+..
T Consensus 89 ~V~~~~~~~-------~~~~iG~v~l~~~~~~~~-~~~hW~~~l~ 125 (138)
T cd08408 89 SVYNKRKMK-------RKEMIGWFSLGLNSSGEE-EEEHWNEMKE 125 (138)
T ss_pred EEEECCCCC-------CCcEEEEEEECCcCCCch-HHHHHHHHHh
Confidence 999999876 899999999998754321 2257777743
No 191
>PF06398 Pex24p: Integral peroxisomal membrane peroxin; InterPro: IPR010482 Peroxisomes play diverse roles in the cell, compartmentalising many activities related to lipid metabolism and functioning in the decomposition of toxic hydrogen peroxide. Sequence similarity was identified between two hypothetical proteins and the peroxin integral membrane protein Pex24p [].
Probab=99.43 E-value=1.6e-12 Score=146.86 Aligned_cols=176 Identities=19% Similarity=0.259 Sum_probs=122.6
Q ss_pred cccchHhhHHHHHHHHHHHHHHHHHH---HHhhccccccCcchhhHHHHHHHHHhhcCcchh--HHHHHHHHHHhhhccc
Q 042999 818 HAWSMRKSKANWFRIVAVLAWAIGLA---KWLHNIRRWKNPVTTVLVHVLYLVLVWYPDLIV--PTGFLYVVLIGVWYYR 892 (1006)
Q Consensus 818 ~~fs~~~~~~n~~rl~~~l~~~~~~~---~~~~~~~~W~~p~~t~~~~~~~~~~~~~p~l~~--~~~~l~~~~~~~~~~~ 892 (1006)
|.+|+.+|.+|+.+|.+.+..++.++ +.+.++++|++|..|+.++++|+++|++|.+.+ ..+++.++++|+..|.
T Consensus 1 p~lS~~ll~~n~~~l~~~l~~~f~~~~~~d~vl~il~W~~p~~t~~~L~l~t~~~l~p~l~l~~lp~~~ll~~il~~~yl 80 (359)
T PF06398_consen 1 PPLSSPLLSSNFPRLSSRLGPIFPFQLILDRVLRILTWTNPDYTLSFLLLYTFLCLNPYLLLLSLPLGLLLFGILLPSYL 80 (359)
T ss_pred CCcChHHHHhChHHHHHHHHHhhHHHHHHHHHHHeEEeCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45899999999999999999999999 999999999999999999999999999999843 2333344455555555
Q ss_pred cCCCCCCCCCCccccCCCCCCCCCCccccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhHHhHhh----hccccC
Q 042999 893 FRPKIPSGMDTRLSQAETVDPDELDEEFDTIPSSKPPEIIRMRYDRLRMLAARVQTVLGDFATQGERVQA----LVSWRD 968 (1006)
Q Consensus 893 ~~~~~~~~~~~~~s~~~~~~~~~~~ee~~~~~~~~~~~~~~~~~~~l~~~~~~vQ~~l~~~a~~~e~i~~----~~~w~~ 968 (1006)
.+...+.. .... +. .+.+.+....|+ +......+...++.+||.|+.+.+.++.+.. +++|++
T Consensus 81 ~~~p~~~~--~~~~--~~---~~~~~~~~~~pt------l~~~s~e~~~nL~dlQn~m~~~~~~~d~~~~~~~~~~~f~~ 147 (359)
T PF06398_consen 81 YRHPSPTS--SLPK--SY---EDHNPEPSEGPT------LDKPSREIVMNLRDLQNKMEDLSDPYDFLSSFLYPYLNFSD 147 (359)
T ss_pred eecCCCcc--cccc--cc---cccCCCcCCCCC------cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCc
Confidence 54311111 0000 00 000011010111 1101223344455689999999888888874 457999
Q ss_pred chhHHHHHHHHHHHHHHhh----hhhhHHHHHHHh-hhhccCC
Q 042999 969 PRATKLFIGVCTVITLVLY----VVPPKMVAVALG-FYYLRHP 1006 (1006)
Q Consensus 969 p~~t~~~~~~l~~~~~~l~----~iP~r~i~l~~~-~~~~~hP 1006 (1006)
+..|.+++++|+++.+.++ +||+|++++++| +.++.||
T Consensus 148 e~~s~~~f~~l~~~~~~~~l~~~~ip~r~~ll~~g~~~l~~Hp 190 (359)
T PF06398_consen 148 ENLSSLIFLLLLLSPILLLLLSPFIPWRFVLLVSGAFVLLYHP 190 (359)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHhhcCC
Confidence 9999999988888777665 479999999987 7777887
No 192
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=99.43 E-value=2.8e-13 Score=130.29 Aligned_cols=106 Identities=30% Similarity=0.431 Sum_probs=86.2
Q ss_pred cccEEEEEEEEecCCCCCCCCCCCCcEEEEEEC--C---eEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEe
Q 042999 14 TVRKLVVEVVDARDLLPKDGQGSSSPYVIADFD--G---QRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYN 88 (1006)
Q Consensus 14 ~~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~--~---~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d 88 (1006)
..+.|+|+|++|++|++++..|.+||||++.+. + .+++|+++++++||.|||+|.|.+.... .....|.|+|||
T Consensus 12 ~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~-~~~~~l~~~v~d 90 (134)
T cd08403 12 TAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPEN-VDNVSLIIAVVD 90 (134)
T ss_pred CCCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEECCHHH-hCCCEEEEEEEE
Confidence 357899999999999999988999999999984 2 3579999999999999999999976532 224579999999
Q ss_pred CCCCCCCCCCCCceeEEEEEeCeeeeeeCCceeEEEEcee
Q 042999 89 DKRYCNGSGRKNHFLGRVKLCGSQFARRGDEGLVYFPLEK 128 (1006)
Q Consensus 89 ~d~~~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~ 128 (1006)
++.. +++++||++.+++.. .+.....|+.+..
T Consensus 91 ~~~~-----~~~~~IG~~~l~~~~---~~~~~~~w~~~~~ 122 (134)
T cd08403 91 YDRV-----GHNELIGVCRVGPNA---DGQGREHWNEMLA 122 (134)
T ss_pred CCCC-----CCCceeEEEEECCCC---CCchHHHHHHHHH
Confidence 9998 789999999998763 2333446776643
No 193
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=99.42 E-value=2.2e-13 Score=130.97 Aligned_cols=106 Identities=28% Similarity=0.373 Sum_probs=87.1
Q ss_pred ccEEEEEEEEecCCCCCCCCCCCCcEEEEEECC-----eEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEeC
Q 042999 15 VRKLVVEVVDARDLLPKDGQGSSSPYVIADFDG-----QRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYND 89 (1006)
Q Consensus 15 ~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~-----~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~ 89 (1006)
.+.|.|+|++|+||...+ .+.+||||++.+.. .+++|++++++.||+|||+|.|.+... .+....|.|+|||+
T Consensus 14 ~~~L~V~V~~a~nL~~~~-~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~-~l~~~~L~~~V~~~ 91 (137)
T cd08409 14 LNRLTVVVLRARGLRQLD-HAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTSR-QLDTASLSLSVMQS 91 (137)
T ss_pred CCeEEEEEEEecCCCccc-CCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEECCHH-HhCccEEEEEEEeC
Confidence 468999999999999988 78899999999852 357999999999999999999998653 23357899999999
Q ss_pred CCCCCCCCCCCceeEEEEEeCeeeeeeCCceeEEEEcee
Q 042999 90 KRYCNGSGRKNHFLGRVKLCGSQFARRGDEGLVYFPLEK 128 (1006)
Q Consensus 90 d~~~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~ 128 (1006)
+.. +++++||++.++.... ..+....+|..+..
T Consensus 92 ~~~-----~~~~~lG~v~ig~~~~-~~~~~~~hW~~~~~ 124 (137)
T cd08409 92 GGV-----RKSKLLGRVVLGPFMY-ARGKELEHWNDMLS 124 (137)
T ss_pred CCC-----CCcceEEEEEECCccc-CCChHHHHHHHHHh
Confidence 988 7899999999986542 44445556777654
No 194
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.41 E-value=1.3e-13 Score=141.84 Aligned_cols=226 Identities=16% Similarity=0.129 Sum_probs=162.6
Q ss_pred EEEEEEEEeecCcccCCCCCCCCCCcEEEEEECC-----ccceeeeeecCCCCCCceecceee--eeeccCC-CCcEEEE
Q 042999 456 YLRVTVMEAQDLCIAHNLPPLTAPEIRVKAQLAL-----QSARTRRGSMNNHSSSFHWHEDVF--FVAAEPF-EDSLILL 527 (1006)
Q Consensus 456 ~L~V~v~~a~~L~~~~~~d~~~~~dpyv~v~lg~-----~~~kT~~~~~~~~t~nP~w~e~~~--f~v~~~~-~~~L~v~ 527 (1006)
.+..++..|++|.+| +.++..|||++..++. .+++|++.. +++||.|+|... +...++. ...+++.
T Consensus 94 ~~~~tl~~a~~lk~~---~~~~~~d~~~~~~llpga~kl~slr~~t~~---n~lN~~w~etev~~~i~~~~~~~K~~Rk~ 167 (362)
T KOG1013|consen 94 MLDTTLDRAKGLKPM---DINGLADPYVKLHLLPGAGKLNSLRTKTTR---NTLNPEWNETEVYEGITDDDTHLKVLRKV 167 (362)
T ss_pred hcceeechhcccchh---hhhhhcchHHhhhcccchhhhhhhhHHhhc---cCcCcceeccceecccccchhhhhhhhee
Confidence 378899999999998 8899999999999953 456777654 999999999753 4444443 3478999
Q ss_pred EEECCCCccccceeEEEEEeccccccccccCcccceEEeCcCCCCC--CCccceeeeEEEEEeeeCCccccccccccCCC
Q 042999 528 VEDRTAKDAAAVILGHAVVPVSSIDQRIDERHVASKWFPLEGSCGR--GCARSYCGRIQLKLCLEGGYHVLDEAAHVCSD 605 (1006)
Q Consensus 528 V~D~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L~~~~~~--~~~~~~~G~l~l~v~l~~~~~~~d~~~~~~~~ 605 (1006)
|+|.+... +.+++|+..+.+..+..... .....|+.-..+.+. ....+.+|++.+++.+.
T Consensus 168 vcdn~~~~-~~~sqGq~r~~lkKl~p~q~--k~f~~cl~~~lp~~rad~~~~E~rg~i~isl~~~--------------- 229 (362)
T KOG1013|consen 168 VCDNDKKT-HNESQGQSRVSLKKLKPLQR--KSFNICLEKSLPSERADRDEDEERGAILISLAYS--------------- 229 (362)
T ss_pred eccCcccc-cccCcccchhhhhccChhhc--chhhhhhhccCCcccccccchhhccceeeeeccC---------------
Confidence 99999765 68999999999888875432 334456554443211 11224456666554221
Q ss_pred CCccccccCCCCcEEEEEEEeeccCCccCccCCCCCCCCCeEEEEEEC---CE--EEEeecccCCCCCeeccEEEEEEeC
Q 042999 606 FRPTAKQLWKPPVGILELGILGARGLLPMKTKNGGKGSTDAYCVAKYG---KK--WVRTRTITDCFDPRWNEQYTWQVYD 680 (1006)
Q Consensus 606 ~~p~~~~l~~~~~g~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~---~~--~~rT~~~~~~~nP~wne~~~~~v~~ 680 (1006)
....-|.+++++|..|..+|. +|.+||||..++. ++ ..+|.+.++++||++|++|.|.+..
T Consensus 230 ----------s~~~~l~vt~iRc~~l~ssDs----ng~sDpyvS~~l~pdv~~~fkkKt~~~K~t~~p~fd~~~~~~i~p 295 (362)
T KOG1013|consen 230 ----------STTPGLIVTIIRCSHLASSDS----NGYSDPYVSQRLSPDVGKKFKKKTQQKKKTLNPEFDEEFFYDIGP 295 (362)
T ss_pred ----------cCCCceEEEEEEeeeeecccc----CCCCCccceeecCCCcchhhcccCcchhccCCccccccccccCCc
Confidence 134568899999999999875 8889999999884 22 4578899999999999999998875
Q ss_pred ---CCcEEEEEEEECCCCCcCCCCCCCCceeEEEEEEcccccCCceEeeEE
Q 042999 681 ---PCTVLTVGVFDNWRMFADASEERPDYRIGKIRIRVSTLENNKVYTTSY 728 (1006)
Q Consensus 681 ---~~~~l~i~v~d~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~ 728 (1006)
....+.|.|||++... ..+++|-+..-+. ..+....+|+
T Consensus 296 gdLa~~kv~lsvgd~~~G~-------s~d~~GG~~~g~~--rr~~v~~h~g 337 (362)
T KOG1013|consen 296 GDLAYKKVALSVGDYDIGK-------SNDSIGGSMLGGY--RRGEVHKHWG 337 (362)
T ss_pred cchhcceEEEeecccCCCc-------CccCCCccccccc--ccchhhcCcc
Confidence 3458999999998754 5778887554433 3333334444
No 195
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=99.40 E-value=1.2e-12 Score=118.84 Aligned_cols=80 Identities=21% Similarity=0.331 Sum_probs=68.9
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEECC-----eEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEeC---
Q 042999 18 LVVEVVDARDLLPKDGQGSSSPYVIADFDG-----QRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYND--- 89 (1006)
Q Consensus 18 L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~-----~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~--- 89 (1006)
|.|+|++|++|. +.+||||++.++. .+.+|+++++|+||+|||+|.|.+.. ...|.+.|||+
T Consensus 1 L~V~V~~A~~L~-----~~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~~-----s~~L~~~v~d~~~~ 70 (118)
T cd08686 1 LNVIVHSAQGFK-----QSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELEG-----SQTLRILCYEKCYS 70 (118)
T ss_pred CEEEEEeCCCCC-----CCCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeCC-----CCEEEEEEEEcccc
Confidence 679999999994 5699999999962 45999999999999999999999874 45899999998
Q ss_pred ----CCCCCCCCCCCceeEEEEEeCee
Q 042999 90 ----KRYCNGSGRKNHFLGRVKLCGSQ 112 (1006)
Q Consensus 90 ----d~~~~~~~~~d~~lG~~~v~l~~ 112 (1006)
|.. ++|+++|.+.+.++-
T Consensus 71 ~~~~d~~-----~~d~~~G~g~i~Ld~ 92 (118)
T cd08686 71 KVKLDGE-----GTDAIMGKGQIQLDP 92 (118)
T ss_pred ccccccc-----CcccEEEEEEEEECH
Confidence 455 689999998888763
No 196
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=99.40 E-value=4.3e-13 Score=129.31 Aligned_cols=107 Identities=33% Similarity=0.484 Sum_probs=90.5
Q ss_pred ccEEEEEEEEecCCCCCCCCCCCCcEEEEEECC-----eEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEeC
Q 042999 15 VRKLVVEVVDARDLLPKDGQGSSSPYVIADFDG-----QRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYND 89 (1006)
Q Consensus 15 ~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~-----~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~ 89 (1006)
.+.|.|+|++|++|+..+..+.+||||++++.. .+++|+++.++.||.|||+|.|.+.... +....|.|+|||.
T Consensus 13 ~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~-l~~~~l~~~v~d~ 91 (134)
T cd00276 13 AERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQ-LEEVSLVITVVDK 91 (134)
T ss_pred CCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHHH-hCCcEEEEEEEec
Confidence 468999999999999988888999999999963 2579999999999999999999987642 1246899999999
Q ss_pred CCCCCCCCCCCceeEEEEEeCeeeeeeCCceeEEEEceecC
Q 042999 90 KRYCNGSGRKNHFLGRVKLCGSQFARRGDEGLVYFPLEKKS 130 (1006)
Q Consensus 90 d~~~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~ 130 (1006)
+.. +++++||.+.+++++ .+....+|++|....
T Consensus 92 ~~~-----~~~~~lG~~~i~l~~---~~~~~~~W~~l~~~~ 124 (134)
T cd00276 92 DSV-----GRNEVIGQVVLGPDS---GGEELEHWNEMLASP 124 (134)
T ss_pred CCC-----CCCceeEEEEECCCC---CCcHHHHHHHHHhCC
Confidence 987 689999999999998 345556899987653
No 197
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.40 E-value=1.7e-12 Score=122.87 Aligned_cols=94 Identities=26% Similarity=0.440 Sum_probs=79.6
Q ss_pred ccEEEEEEEEecCCCCCCCCCCCCcEEEEEEC-----CeEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEeC
Q 042999 15 VRKLVVEVVDARDLLPKDGQGSSSPYVIADFD-----GQRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYND 89 (1006)
Q Consensus 15 ~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~-----~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~ 89 (1006)
.+.|.|+|++|++|+..+..+.+||||++.+. ....+|++++++.||+|||+|.|.........+..|.|+|||+
T Consensus 14 ~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~~~~~l~~~v~d~ 93 (123)
T cd04035 14 NSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEEDIQRKTLRLLVLDE 93 (123)
T ss_pred CCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHHHhCCCEEEEEEEEc
Confidence 46899999999999998888899999999983 2468999999999999999999964332222256899999999
Q ss_pred CCCCCCCCCCCceeEEEEEeCeeee
Q 042999 90 KRYCNGSGRKNHFLGRVKLCGSQFA 114 (1006)
Q Consensus 90 d~~~~~~~~~d~~lG~~~v~l~~l~ 114 (1006)
+.. ++++||.+.++++++.
T Consensus 94 ~~~------~~~~iG~~~i~l~~l~ 112 (123)
T cd04035 94 DRF------GNDFLGETRIPLKKLK 112 (123)
T ss_pred CCc------CCeeEEEEEEEcccCC
Confidence 887 6899999999999964
No 198
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.38 E-value=4.3e-13 Score=147.00 Aligned_cols=127 Identities=29% Similarity=0.490 Sum_probs=110.0
Q ss_pred cEEEEEEEEecCCCCCCCCCCCCcEEEEEECCeEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEeCCCCCCC
Q 042999 16 RKLVVEVVDARDLLPKDGQGSSSPYVIADFDGQRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYNDKRYCNG 95 (1006)
Q Consensus 16 ~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~d~~~~~ 95 (1006)
..+.++|++|.+|..+|..|++||||.+.++..+++|+++...+||+|||.|+|.++.. ...|.+.|||.|....+
T Consensus 295 akitltvlcaqgl~akdktg~sdpyvt~qv~ktkrrtrti~~~lnpvw~ekfhfechns----tdrikvrvwded~dlks 370 (1283)
T KOG1011|consen 295 AKITLTVLCAQGLIAKDKTGKSDPYVTAQVGKTKRRTRTIHQELNPVWNEKFHFECHNS----TDRIKVRVWDEDNDLKS 370 (1283)
T ss_pred eeeEEeeeecccceecccCCCCCCcEEEeecccchhhHhhhhccchhhhhheeeeecCC----CceeEEEEecCcccHHH
Confidence 57899999999999999999999999999999999999999999999999999999987 56899999998754211
Q ss_pred ------CCCCCceeEEEEEeCeeeeeeCCceeEEEEceecCCceeeeEEEEEEEEEEecC
Q 042999 96 ------SGRKNHFLGRVKLCGSQFARRGDEGLVYFPLEKKSVFSWIRGEIGLRIYYYDEL 149 (1006)
Q Consensus 96 ------~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~~~ 149 (1006)
.+-+|||||+..|.+..+ .+..+.||.|+++..++.+.|-|++.|...-..
T Consensus 371 klrqkl~resddflgqtvievrtl---sgemdvwynlekrtdksavsgairlhisveikg 427 (1283)
T KOG1011|consen 371 KLRQKLTRESDDFLGQTVIEVRTL---SGEMDVWYNLEKRTDKSAVSGAIRLHISVEIKG 427 (1283)
T ss_pred HHHHHhhhcccccccceeEEEEec---ccchhhhcchhhccchhhccceEEEEEEEEEcC
Confidence 124789999999988874 245568999999999999999999988876654
No 199
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=99.38 E-value=1.7e-12 Score=120.31 Aligned_cols=94 Identities=16% Similarity=0.186 Sum_probs=76.6
Q ss_pred EEEeeccCCccCccCCCCCCCCCeEEEEEECC------EEEEeecccCCCCCeeccEEEEEEeC-----CCcEEEEEEEE
Q 042999 623 LGILGARGLLPMKTKNGGKGSTDAYCVAKYGK------KWVRTRTITDCFDPRWNEQYTWQVYD-----PCTVLTVGVFD 691 (1006)
Q Consensus 623 v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~~------~~~rT~~~~~~~nP~wne~~~~~v~~-----~~~~l~i~v~d 691 (1006)
+-.++|++|++++ . .|++||||++.+.+ ...||+++++++||+|| +|.|++.+ +...|.|+|||
T Consensus 4 ~~~i~a~~L~~~d---~-~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d 78 (110)
T cd04047 4 ELQFSGKKLDKKD---F-FGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYD 78 (110)
T ss_pred EEEEEeCCCCCCC---C-CCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEE
Confidence 4467999998854 4 78999999999853 25799999999999999 78887643 35689999999
Q ss_pred CCCCCcCCCCCCCCceeEEEEEEcccccCCceEeeEEEe
Q 042999 692 NWRMFADASEERPDYRIGKIRIRVSTLENNKVYTTSYPL 730 (1006)
Q Consensus 692 ~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L 730 (1006)
++..+ +|++||++.+++.+|..++ ..++.+
T Consensus 79 ~d~~~-------~d~~iG~~~~~l~~l~~~~--~~~~~~ 108 (110)
T cd04047 79 YDSSG-------KHDLIGEFETTLDELLKSS--PLEFEL 108 (110)
T ss_pred eCCCC-------CCcEEEEEEEEHHHHhcCC--CceEEe
Confidence 99887 8999999999999998554 344443
No 200
>PLN02270 phospholipase D alpha
Probab=99.37 E-value=3.7e-12 Score=149.17 Aligned_cols=128 Identities=20% Similarity=0.230 Sum_probs=109.8
Q ss_pred cEEEEEEEeeccCCccCcc--------------CCCCCCCCCeEEEEEECCEEE-EeecccCC-CCCeeccEEEEEEeCC
Q 042999 618 VGILELGILGARGLLPMKT--------------KNGGKGSTDAYCVAKYGKKWV-RTRTITDC-FDPRWNEQYTWQVYDP 681 (1006)
Q Consensus 618 ~g~L~v~v~~a~~L~~~~~--------------~d~~~g~sdpyv~v~~~~~~~-rT~~~~~~-~nP~wne~~~~~v~~~ 681 (1006)
-|.|.|+|++|++|++++. ...+.+.|||||.|.+++.++ ||+++.+. .||+|||.|.+++.++
T Consensus 7 hg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~v~rtr~~~~~~~~p~w~e~f~i~~ah~ 86 (808)
T PLN02270 7 HGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKARVGRTRKIENEPKNPRWYESFHIYCAHM 86 (808)
T ss_pred ecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCcEEEEEeecCCCCCCCccccceEEeeccC
Confidence 4899999999999987420 112256889999999987765 99999885 6999999999999999
Q ss_pred CcEEEEEEEECCCCCcCCCCCCCCceeEEEEEEcccccCCceEeeEEEeeeeccCCcccccEEEEEEEEecC
Q 042999 682 CTVLTVGVFDNWRMFADASEERPDYRIGKIRIRVSTLENNKVYTTSYPLLVLLRTGLKKMGEIELAVRFVCP 753 (1006)
Q Consensus 682 ~~~l~i~v~d~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~l~l~~~~~~~ 753 (1006)
.+.++|+|.|.|.++ ..+||++.||+.+|..|...+.||++.+...+..+....|+++++|.+-
T Consensus 87 ~~~v~f~vkd~~~~g--------~~~ig~~~~p~~~~~~g~~i~~~~~~~~~~~~p~~~~~~~~~~~~f~~~ 150 (808)
T PLN02270 87 ASNIIFTVKDDNPIG--------ATLIGRAYIPVEEILDGEEVDRWVEILDNDKNPIHGGSKIHVKLQYFEV 150 (808)
T ss_pred cceEEEEEecCCccC--------ceEEEEEEEEHHHhcCCCccccEEeccCCCCCcCCCCCEEEEEEEEEEc
Confidence 999999999999987 5699999999999999999999999998766555544699999999974
No 201
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.34 E-value=2.3e-12 Score=164.82 Aligned_cols=119 Identities=14% Similarity=0.272 Sum_probs=99.6
Q ss_pred ccEEEEEEEEecCCCCCCCCCCCCcEEEEEECCe-EEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEeCCCCC
Q 042999 15 VRKLVVEVVDARDLLPKDGQGSSSPYVIADFDGQ-RKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYNDKRYC 93 (1006)
Q Consensus 15 ~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~~-~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~d~~~ 93 (1006)
.|.|+|+|++|+||. +..|++||||++.++++ ++||++++++.||+|||.|+|.+..+.. +..|+|+|||+|.+
T Consensus 1979 ~G~L~V~V~~a~nl~--~~~~~sdPyv~l~~g~~~~~kTkvvk~~~nP~Wne~f~~~~~~p~~--~~~l~iev~d~d~f- 2053 (2102)
T PLN03200 1979 PGSLTVTIKRGNNLK--QSMGNTNAFCKLTLGNGPPRQTKVVSHSSSPEWKEGFTWAFDSPPK--GQKLHISCKSKNTF- 2053 (2102)
T ss_pred CcceEEEEeeccccc--cccCCCCCeEEEEECCCCcccccccCCCCCCCcccceeeeecCCCC--CCceEEEEEecCcc-
Confidence 589999999999997 33689999999999965 7899999999999999999999888642 46799999999999
Q ss_pred CCCCCCCceeEEEEEeCeeeeeeCCceeEEEEceecCCceeeeEE---EEEEEEEEe
Q 042999 94 NGSGRKNHFLGRVKLCGSQFARRGDEGLVYFPLEKKSVFSWIRGE---IGLRIYYYD 147 (1006)
Q Consensus 94 ~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~---i~l~~~~~~ 147 (1006)
+++.||.+++++.+++. +.....||+|.+.+.+ .|+ |.+++.|.+
T Consensus 2054 -----~kd~~G~~~i~l~~vv~-~~~~~~~~~L~~~~~k---~G~~~~~~~e~~w~~ 2101 (2102)
T PLN03200 2054 -----GKSSLGKVTIQIDRVVM-EGTYSGEYSLNPESNK---DGSSRTLEIEFQWSN 2101 (2102)
T ss_pred -----CCCCCceEEEEHHHHhc-CceeeeeeecCccccc---CCCcceEEEEEEecC
Confidence 45599999999999754 4455679999865433 466 888888864
No 202
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.32 E-value=1.7e-12 Score=142.36 Aligned_cols=127 Identities=27% Similarity=0.402 Sum_probs=103.5
Q ss_pred cEEEEEEEeeccCCccCccCCCCCCCCCeEEEEEECCEEEEeecccCCCCCeeccEEEEEEeCCCcEEEEEEEECCCCCc
Q 042999 618 VGILELGILGARGLLPMKTKNGGKGSTDAYCVAKYGKKWVRTRTITDCFDPRWNEQYTWQVYDPCTVLTVGVFDNWRMFA 697 (1006)
Q Consensus 618 ~g~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~~~~~rT~~~~~~~nP~wne~~~~~v~~~~~~l~i~v~d~~~~~~ 697 (1006)
...++++|+.|+||.+.| . .|+|||||.+.+|....||++|..++||+|||.|.|.+.+..+.|.+.|||+|..-.
T Consensus 294 sakitltvlcaqgl~akd---k-tg~sdpyvt~qv~ktkrrtrti~~~lnpvw~ekfhfechnstdrikvrvwded~dlk 369 (1283)
T KOG1011|consen 294 SAKITLTVLCAQGLIAKD---K-TGKSDPYVTAQVGKTKRRTRTIHQELNPVWNEKFHFECHNSTDRIKVRVWDEDNDLK 369 (1283)
T ss_pred ceeeEEeeeecccceecc---c-CCCCCCcEEEeecccchhhHhhhhccchhhhhheeeeecCCCceeEEEEecCcccHH
Confidence 357889999999999854 4 899999999999999999999999999999999999999999999999999987542
Q ss_pred CCC----CCCCCceeEEEEEEcccccCCceEeeEEEeeeeccCCcccccEEEEEEEEe
Q 042999 698 DAS----EERPDYRIGKIRIRVSTLENNKVYTTSYPLLVLLRTGLKKMGEIELAVRFV 751 (1006)
Q Consensus 698 ~~~----~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~l~l~~~~~ 751 (1006)
++- ..-+|||||+..|.+..|.-. .+.||.|..+..+.. -.|.|+|.+...
T Consensus 370 sklrqkl~resddflgqtvievrtlsge--mdvwynlekrtdksa-vsgairlhisve 424 (1283)
T KOG1011|consen 370 SKLRQKLTRESDDFLGQTVIEVRTLSGE--MDVWYNLEKRTDKSA-VSGAIRLHISVE 424 (1283)
T ss_pred HHHHHHhhhcccccccceeEEEEecccc--hhhhcchhhccchhh-ccceEEEEEEEE
Confidence 110 223799999999999988643 389999976554432 348887765554
No 203
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=99.29 E-value=9.7e-12 Score=115.20 Aligned_cols=90 Identities=24% Similarity=0.325 Sum_probs=74.7
Q ss_pred EEEEEEecCCCCCCCCCCCCcEEEEEECCe------EEEeeCcCCCCCCeeeeEEEEEeeCCCCC-CCceEEEEEEeCCC
Q 042999 19 VVEVVDARDLLPKDGQGSSSPYVIADFDGQ------RKRTSTKFRDLNPVWNEPLEFIVSDPKNM-DCEELEIEVYNDKR 91 (1006)
Q Consensus 19 ~V~v~~a~~L~~~~~~g~~dPyv~v~~~~~------~~kT~~~~~t~nP~wne~f~f~~~~~~~~-~~~~L~i~V~d~d~ 91 (1006)
.+-.++|++|+.++..|.+||||++++.++ .++|+++++++||+|| +|.|.+...... ....|.|+|||++.
T Consensus 3 ~~~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d~ 81 (110)
T cd04047 3 VELQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDS 81 (110)
T ss_pred EEEEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeCC
Confidence 345679999999999999999999998543 4899999999999999 788875432111 14689999999999
Q ss_pred CCCCCCCCCceeEEEEEeCeeee
Q 042999 92 YCNGSGRKNHFLGRVKLCGSQFA 114 (1006)
Q Consensus 92 ~~~~~~~~d~~lG~~~v~l~~l~ 114 (1006)
. ++|++||++.++++++.
T Consensus 82 ~-----~~d~~iG~~~~~l~~l~ 99 (110)
T cd04047 82 S-----GKHDLIGEFETTLDELL 99 (110)
T ss_pred C-----CCCcEEEEEEEEHHHHh
Confidence 8 78999999999999975
No 204
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=99.26 E-value=2.4e-11 Score=106.66 Aligned_cols=82 Identities=38% Similarity=0.719 Sum_probs=73.6
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEECC---eEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEeCCCCCC
Q 042999 18 LVVEVVDARDLLPKDGQGSSSPYVIADFDG---QRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYNDKRYCN 94 (1006)
Q Consensus 18 L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~---~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~d~~~~ 94 (1006)
|+|+|++|++|...+..+..||||++.+++ ..++|+++.++.+|.|+|+|.|.+.... ...|.|+|||++..
T Consensus 1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~---~~~l~~~V~~~~~~-- 75 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFEFPLDDPD---LDSLSFEVWDKDSF-- 75 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEEEEESHGC---GTEEEEEEEEETSS--
T ss_pred CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeeccccceeeeeeeeeeeccc---ccceEEEEEECCCC--
Confidence 789999999999988888999999999976 6799999999999999999999977654 34599999999999
Q ss_pred CCCCCCceeEEEE
Q 042999 95 GSGRKNHFLGRVK 107 (1006)
Q Consensus 95 ~~~~~d~~lG~~~ 107 (1006)
+++++||++.
T Consensus 76 ---~~~~~iG~~~ 85 (85)
T PF00168_consen 76 ---GKDELIGEVK 85 (85)
T ss_dssp ---SSEEEEEEEE
T ss_pred ---CCCCEEEEEC
Confidence 6799999874
No 205
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=99.23 E-value=4e-11 Score=105.22 Aligned_cols=81 Identities=25% Similarity=0.406 Sum_probs=71.4
Q ss_pred EEEEEeeccCCccCccCCCCCCCCCeEEEEEECC---EEEEeecccCCCCCeeccEEEEEEeC-CCcEEEEEEEECCCCC
Q 042999 621 LELGILGARGLLPMKTKNGGKGSTDAYCVAKYGK---KWVRTRTITDCFDPRWNEQYTWQVYD-PCTVLTVGVFDNWRMF 696 (1006)
Q Consensus 621 L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~~---~~~rT~~~~~~~nP~wne~~~~~v~~-~~~~l~i~v~d~~~~~ 696 (1006)
|+|+|++|+||+..+ . .+..||||++.+++ ...+|+++.++.+|.|||+|.|++.. ....|.|+|||++..+
T Consensus 1 L~v~I~~a~~L~~~~---~-~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~~~V~~~~~~~ 76 (85)
T PF00168_consen 1 LTVTIHSARNLPSKD---S-NGKPDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFEFPLDDPDLDSLSFEVWDKDSFG 76 (85)
T ss_dssp EEEEEEEEESSSSSS---T-TSSBEEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEEEEESHGCGTEEEEEEEEETSSS
T ss_pred CEEEEEEEECCCCcc---c-CCcccccceeecceeeeeeeeeeeeeccccceeeeeeeeeeecccccceEEEEEECCCCC
Confidence 789999999998743 4 77899999999976 78999999999999999999999765 4457999999999887
Q ss_pred cCCCCCCCCceeEEEE
Q 042999 697 ADASEERPDYRIGKIR 712 (1006)
Q Consensus 697 ~~~~~~~~d~~lG~~~ 712 (1006)
+|++||++.
T Consensus 77 -------~~~~iG~~~ 85 (85)
T PF00168_consen 77 -------KDELIGEVK 85 (85)
T ss_dssp -------SEEEEEEEE
T ss_pred -------CCCEEEEEC
Confidence 799999974
No 206
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.16 E-value=2.1e-11 Score=125.84 Aligned_cols=94 Identities=24% Similarity=0.311 Sum_probs=78.2
Q ss_pred ccEEEEEEEEecCCCCCCCCCCCCcEEEEEECC-----eEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEeC
Q 042999 15 VRKLVVEVVDARDLLPKDGQGSSSPYVIADFDG-----QRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYND 89 (1006)
Q Consensus 15 ~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~-----~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~ 89 (1006)
...+.+++.+|++|.+++.++..|||++..+.. .+.+|++..+++||.|+|+.....-.........+++.|.|.
T Consensus 92 ~~~~~~tl~~a~~lk~~~~~~~~d~~~~~~llpga~kl~slr~~t~~n~lN~~w~etev~~~i~~~~~~~K~~Rk~vcdn 171 (362)
T KOG1013|consen 92 SRMLDTTLDRAKGLKPMDINGLADPYVKLHLLPGAGKLNSLRTKTTRNTLNPEWNETEVYEGITDDDTHLKVLRKVVCDN 171 (362)
T ss_pred hhhcceeechhcccchhhhhhhcchHHhhhcccchhhhhhhhHHhhccCcCcceeccceecccccchhhhhhhheeeccC
Confidence 457899999999999999999999999999952 348899999999999999877664433333356788999999
Q ss_pred CCCCCCCCCCCceeEEEEEeCeee
Q 042999 90 KRYCNGSGRKNHFLGRVKLCGSQF 113 (1006)
Q Consensus 90 d~~~~~~~~~d~~lG~~~v~l~~l 113 (1006)
+.+ ..++++|+..+++..+
T Consensus 172 ~~~-----~~~~sqGq~r~~lkKl 190 (362)
T KOG1013|consen 172 DKK-----THNESQGQSRVSLKKL 190 (362)
T ss_pred ccc-----ccccCcccchhhhhcc
Confidence 988 6889999999888775
No 207
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=99.11 E-value=3.8e-10 Score=102.15 Aligned_cols=99 Identities=29% Similarity=0.487 Sum_probs=85.0
Q ss_pred EEEEEeeccCCccCccCCCCCCCCCeEEEEEECC-EEEEeecccCCCCCeeccEEEEEEeC-CCcEEEEEEEECCCCCcC
Q 042999 621 LELGILGARGLLPMKTKNGGKGSTDAYCVAKYGK-KWVRTRTITDCFDPRWNEQYTWQVYD-PCTVLTVGVFDNWRMFAD 698 (1006)
Q Consensus 621 L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~~-~~~rT~~~~~~~nP~wne~~~~~v~~-~~~~l~i~v~d~~~~~~~ 698 (1006)
|.|.|++|++|.... . .+..||||.+.+.+ ...+|+++.++.||.||+.|.|++.. ....|.|.|||.+..+
T Consensus 1 l~v~i~~~~~l~~~~---~-~~~~~~~v~v~~~~~~~~~T~~~~~~~~P~w~~~~~~~~~~~~~~~l~i~v~~~~~~~-- 74 (102)
T cd00030 1 LRVTVIEARNLPAKD---L-NGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPESDTLTVEVWDKDRFS-- 74 (102)
T ss_pred CEEEEEeeeCCCCcC---C-CCCCCcEEEEEeccCceEecceeCCCCCCcccceEEEEccCCCCCEEEEEEEecCCCC--
Confidence 578999999997643 2 56799999999987 88999999999999999999999988 6778999999998765
Q ss_pred CCCCCCCceeEEEEEEccccc-CCceEeeEEEe
Q 042999 699 ASEERPDYRIGKIRIRVSTLE-NNKVYTTSYPL 730 (1006)
Q Consensus 699 ~~~~~~d~~lG~~~i~l~~l~-~~~~~~~~~~L 730 (1006)
.+.+||.+.+++..+. .......|++|
T Consensus 75 -----~~~~ig~~~~~l~~l~~~~~~~~~~~~l 102 (102)
T cd00030 75 -----KDDFLGEVEIPLSELLDSGKEGELWLPL 102 (102)
T ss_pred -----CCceeEEEEEeHHHhhhcCCcCcceecC
Confidence 6889999999999998 55555677764
No 208
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=99.06 E-value=3.9e-11 Score=134.04 Aligned_cols=138 Identities=24% Similarity=0.429 Sum_probs=110.1
Q ss_pred CCCCCCCCCCcccEEEEEEEEecCCCCCCCCCCCCcEEEEEEC------C-------e------------------EEEe
Q 042999 4 PSQPPPQQQFTVRKLVVEVVDARDLLPKDGQGSSSPYVIADFD------G-------Q------------------RKRT 52 (1006)
Q Consensus 4 p~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~------~-------~------------------~~kT 52 (1006)
+..+.++| ...|.|.+.+|+||.++|.+|.+|||+...+- + + -+-|
T Consensus 105 ~v~~~k~P---~~~l~is~~~ak~l~akd~ngfSdP~~m~g~~p~~~~~~~pra~~eqrdgl~~~~~~~GpiPAKlIkat 181 (1103)
T KOG1328|consen 105 KVKQNKPP---SVLLNISLLEAKDLIAKDVNGFSDPFAMMGVVPGTRKENSPRALHEQRDGLMHRFQDTGPIPAKLIKAT 181 (1103)
T ss_pred cccCCCCC---cHHHHHHHHHhcCccccCCCCCCChhhhhccccccccccChhhhhhhhhhhhhccccCCCCcHHHhhhc
Confidence 44555555 44566999999999999999999999998772 0 1 0568
Q ss_pred eCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEeCCCCC-------------------------------CCCCCCCc
Q 042999 53 STKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYNDKRYC-------------------------------NGSGRKNH 101 (1006)
Q Consensus 53 ~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~d~~~-------------------------------~~~~~~d~ 101 (1006)
+++++|+||+|+|.|.|.+.+.. ...+++.+||+|.-. ++-...||
T Consensus 182 svk~~TLnPkW~EkF~F~IeDv~---tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tDD 258 (1103)
T KOG1328|consen 182 SVKKKTLNPKWSEKFQFTIEDVQ---TDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTDD 258 (1103)
T ss_pred ccccccCCcchhhheeeehhccc---cceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCccccc
Confidence 88999999999999999998854 568999999987542 21224489
Q ss_pred eeEEEEEeCeeeeeeCCceeEEEEceecCCceeeeEEEEEEEEEEecC
Q 042999 102 FLGRVKLCGSQFARRGDEGLVYFPLEKKSVFSWIRGEIGLRIYYYDEL 149 (1006)
Q Consensus 102 ~lG~~~v~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~~~ 149 (1006)
|||++.+++.++- ....++||.|++++..++++|.+++.+......
T Consensus 259 FLGciNipl~EiP--~~Gld~WFkLepRS~~S~VqG~~~LklwLsT~e 304 (1103)
T KOG1328|consen 259 FLGCINIPLAEIP--PDGLDQWFKLEPRSDKSKVQGQVKLKLWLSTKE 304 (1103)
T ss_pred cccccccchhcCC--cchHHHHhccCcccccccccceEEEEEEEeeec
Confidence 9999999999963 334568999999999999999999999877654
No 209
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.06 E-value=8.4e-10 Score=103.49 Aligned_cols=93 Identities=23% Similarity=0.281 Sum_probs=77.9
Q ss_pred EEEEEeeccCCccCccCCCCCC--CCCeEEEEEEC---CEEEEeecccCCCC--CeeccEEEEEEeCC------------
Q 042999 621 LELGILGARGLLPMKTKNGGKG--STDAYCVAKYG---KKWVRTRTITDCFD--PRWNEQYTWQVYDP------------ 681 (1006)
Q Consensus 621 L~v~v~~a~~L~~~~~~d~~~g--~sdpyv~v~~~---~~~~rT~~~~~~~n--P~wne~~~~~v~~~------------ 681 (1006)
|+|.|.+|+|++..+. +. .| .+||||++.+. .+..+|.+.++++| |.||+.|.|++..+
T Consensus 2 LRViIw~~~~v~~~~~-~~-~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~ 79 (133)
T cd08374 2 LRVIVWNTRDVLNDDT-NI-TGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKE 79 (133)
T ss_pred EEEEEEECcCCccccc-cc-CCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeec
Confidence 7999999999776543 33 34 59999999985 35689999999998 99999999987541
Q ss_pred ------------CcEEEEEEEECCCCCcCCCCCCCCceeEEEEEEcccccCCc
Q 042999 682 ------------CTVLTVGVFDNWRMFADASEERPDYRIGKIRIRVSTLENNK 722 (1006)
Q Consensus 682 ------------~~~l~i~v~d~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~ 722 (1006)
...|+|+|||+|.++ +|++||.+.++|+.+..+.
T Consensus 80 ~~~~~~~~e~~~~~~L~lqvwD~D~~s-------~dd~iG~~~l~l~~l~~~~ 125 (133)
T cd08374 80 HFWSLDETEYKIPPKLTLQVWDNDKFS-------PDDFLGSLELDLSILPRPA 125 (133)
T ss_pred cccccCcceEecCcEEEEEEEECcccC-------CCCcceEEEEEhhhccccc
Confidence 247999999999987 8999999999999988765
No 210
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=99.05 E-value=1e-09 Score=99.50 Aligned_cols=91 Identities=29% Similarity=0.469 Sum_probs=79.2
Q ss_pred EEEEEeeccCCccCccCCCCCCCCCeEEEEEECCE---EEEeecccCCCCCeeccEEEEEEeCC-CcEEEEEEEECCCCC
Q 042999 621 LELGILGARGLLPMKTKNGGKGSTDAYCVAKYGKK---WVRTRTITDCFDPRWNEQYTWQVYDP-CTVLTVGVFDNWRMF 696 (1006)
Q Consensus 621 L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~~~---~~rT~~~~~~~nP~wne~~~~~v~~~-~~~l~i~v~d~~~~~ 696 (1006)
|.|.|++|++|.... . .+..+|||.++++.. ..+|+++.++.||.||++|.|++..+ ...|.|+|||++..+
T Consensus 2 l~i~i~~~~~l~~~~---~-~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~i~v~~~~~~~ 77 (101)
T smart00239 2 LTVKIISARNLPKKD---K-KGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPELAELEIEVYDKDRFG 77 (101)
T ss_pred eEEEEEEeeCCCCCC---C-CCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcccCEEEEEEEecCCcc
Confidence 689999999997643 2 357899999999764 79999999999999999999999887 789999999998765
Q ss_pred cCCCCCCCCceeEEEEEEcccccCCc
Q 042999 697 ADASEERPDYRIGKIRIRVSTLENNK 722 (1006)
Q Consensus 697 ~~~~~~~~d~~lG~~~i~l~~l~~~~ 722 (1006)
.+.++|.+.+++.++..+.
T Consensus 78 -------~~~~~G~~~~~l~~~~~~~ 96 (101)
T smart00239 78 -------RDDFIGQVTIPLSDLLLGG 96 (101)
T ss_pred -------CCceeEEEEEEHHHcccCc
Confidence 6899999999999987665
No 211
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=99.04 E-value=1.2e-09 Score=98.75 Aligned_cols=101 Identities=43% Similarity=0.755 Sum_probs=85.5
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEECC-eEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEeCCCCCCCC
Q 042999 18 LVVEVVDARDLLPKDGQGSSSPYVIADFDG-QRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYNDKRYCNGS 96 (1006)
Q Consensus 18 L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~-~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~d~~~~~~ 96 (1006)
|.|+|++|++|......+..+|||.+.+.+ ..++|++..++.||.|||.|.|.+.... ...|.|+|||.+..
T Consensus 1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~~~~~~T~~~~~~~~P~w~~~~~~~~~~~~---~~~l~i~v~~~~~~---- 73 (102)
T cd00030 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPE---SDTLTVEVWDKDRF---- 73 (102)
T ss_pred CEEEEEeeeCCCCcCCCCCCCcEEEEEeccCceEecceeCCCCCCcccceEEEEccCCC---CCEEEEEEEecCCC----
Confidence 579999999998766677899999999987 8899999999999999999999998731 56899999999988
Q ss_pred CCCCceeEEEEEeCeeeeeeCCceeEEEEc
Q 042999 97 GRKNHFLGRVKLCGSQFARRGDEGLVYFPL 126 (1006)
Q Consensus 97 ~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L 126 (1006)
+.+++||.+.+++.++.........|++|
T Consensus 74 -~~~~~ig~~~~~l~~l~~~~~~~~~~~~l 102 (102)
T cd00030 74 -SKDDFLGEVEIPLSELLDSGKEGELWLPL 102 (102)
T ss_pred -CCCceeEEEEEeHHHhhhcCCcCcceecC
Confidence 57899999999999964244445567764
No 212
>PLN02223 phosphoinositide phospholipase C
Probab=99.03 E-value=2.7e-09 Score=120.72 Aligned_cols=121 Identities=20% Similarity=0.255 Sum_probs=91.2
Q ss_pred cEEEEEEEeeccCCccC--ccCCCCCCCCCeEEEEEECC-----EEEEeecccCCCCCeeccEEEEEEeCCCc-EEEEEE
Q 042999 618 VGILELGILGARGLLPM--KTKNGGKGSTDAYCVAKYGK-----KWVRTRTITDCFDPRWNEQYTWQVYDPCT-VLTVGV 689 (1006)
Q Consensus 618 ~g~L~v~v~~a~~L~~~--~~~d~~~g~sdpyv~v~~~~-----~~~rT~~~~~~~nP~wne~~~~~v~~~~~-~l~i~v 689 (1006)
...|.|+|+.|++++.- ++.+. ....||||.|.+.+ ...+|.+..++.||+|||+|.|++..|.- .|.|.|
T Consensus 408 ~~~L~V~Visgq~~~~~~~k~~~~-~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PELAlLrf~V 486 (537)
T PLN02223 408 VKILKVKIYMGDGWIVDFKKRIGR-LSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDLALISFEV 486 (537)
T ss_pred ceEEEEEEEEcccccCCcccccCC-CCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCceEEEEEE
Confidence 46899999999998621 11122 45689999999843 35678776778999999999999988774 789999
Q ss_pred EECCCCCcCCCCCCCCceeEEEEEEcccccCCceEeeEEEeeeeccCCcccccEEEEEEEE
Q 042999 690 FDNWRMFADASEERPDYRIGKIRIRVSTLENNKVYTTSYPLLVLLRTGLKKMGEIELAVRF 750 (1006)
Q Consensus 690 ~d~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~l~l~~~~ 750 (1006)
+|+|... +|+|+|+..+|++.|+.|- +..+|.++...... .-.|.+++.|
T Consensus 487 ~D~D~~~-------~ddfiGQ~~LPv~~Lr~Gy---R~VpL~~~~g~~l~-~~~Ll~~f~~ 536 (537)
T PLN02223 487 YDYEVST-------ADAFCGQTCLPVSELIEGI---RAVPLYDERGKACS-STMLLTRFKW 536 (537)
T ss_pred EecCCCC-------CCcEEEEEecchHHhcCCc---eeEeccCCCcCCCC-CceEEEEEEe
Confidence 9999765 7899999999999999884 77899875443322 2444444433
No 213
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.01 E-value=1.6e-09 Score=101.54 Aligned_cols=92 Identities=27% Similarity=0.409 Sum_probs=77.2
Q ss_pred EEEEEEEecCCCCCC--CCC--CCCcEEEEEECC---eEEEeeCcCCCCC--CeeeeEEEEEeeCC--------------
Q 042999 18 LVVEVVDARDLLPKD--GQG--SSSPYVIADFDG---QRKRTSTKFRDLN--PVWNEPLEFIVSDP-------------- 74 (1006)
Q Consensus 18 L~V~v~~a~~L~~~~--~~g--~~dPyv~v~~~~---~~~kT~~~~~t~n--P~wne~f~f~~~~~-------------- 74 (1006)
|+|.|.+|++++..+ ..| .+||||++.+.+ .+++|.++.+++| |.||+.|.|++...
T Consensus 2 LRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~~ 81 (133)
T cd08374 2 LRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEHF 81 (133)
T ss_pred EEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeeccc
Confidence 789999999965433 355 599999999964 5699999999999 99999999987662
Q ss_pred ------CCCCCceEEEEEEeCCCCCCCCCCCCceeEEEEEeCeeee
Q 042999 75 ------KNMDCEELEIEVYNDKRYCNGSGRKNHFLGRVKLCGSQFA 114 (1006)
Q Consensus 75 ------~~~~~~~L~i~V~d~d~~~~~~~~~d~~lG~~~v~l~~l~ 114 (1006)
+......|.++|||.|.+ ++|++||.+.+++..+.
T Consensus 82 ~~~~~~e~~~~~~L~lqvwD~D~~-----s~dd~iG~~~l~l~~l~ 122 (133)
T cd08374 82 WSLDETEYKIPPKLTLQVWDNDKF-----SPDDFLGSLELDLSILP 122 (133)
T ss_pred cccCcceEecCcEEEEEEEECccc-----CCCCcceEEEEEhhhcc
Confidence 223367899999999999 89999999999999863
No 214
>PLN02223 phosphoinositide phospholipase C
Probab=99.00 E-value=3.5e-09 Score=119.82 Aligned_cols=120 Identities=20% Similarity=0.292 Sum_probs=91.8
Q ss_pred cccEEEEEEEEecCCCCC-----CCCCCCCcEEEEEECC-----eEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEE
Q 042999 14 TVRKLVVEVVDARDLLPK-----DGQGSSSPYVIADFDG-----QRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELE 83 (1006)
Q Consensus 14 ~~~~L~V~v~~a~~L~~~-----~~~g~~dPyv~v~~~~-----~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~ 83 (1006)
....|.|+|+.|.+++.. +.....||||+|.+.| .+++|++..++.||+|||+|.|.+..++ -..|+
T Consensus 407 ~~~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PE---LAlLr 483 (537)
T PLN02223 407 VVKILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPD---LALIS 483 (537)
T ss_pred cceEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccC---ceEEE
Confidence 357899999999987521 2234679999999953 3478888889999999999999998875 34789
Q ss_pred EEEEeCCCCCCCCCCCCceeEEEEEeCeeeeeeCCceeEEEEceecCCceeeeEEEEEEEEE
Q 042999 84 IEVYNDKRYCNGSGRKNHFLGRVKLCGSQFARRGDEGLVYFPLEKKSVFSWIRGEIGLRIYY 145 (1006)
Q Consensus 84 i~V~d~d~~~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~ 145 (1006)
|+|+|+|.. ++++|+|+..+|+..+ ..| .++++|.+..+..-..-.|.+++.|
T Consensus 484 f~V~D~D~~-----~~ddfiGQ~~LPv~~L-r~G---yR~VpL~~~~g~~l~~~~Ll~~f~~ 536 (537)
T PLN02223 484 FEVYDYEVS-----TADAFCGQTCLPVSEL-IEG---IRAVPLYDERGKACSSTMLLTRFKW 536 (537)
T ss_pred EEEEecCCC-----CCCcEEEEEecchHHh-cCC---ceeEeccCCCcCCCCCceEEEEEEe
Confidence 999999988 6899999999999985 444 4578887655433223466666654
No 215
>PLN02952 phosphoinositide phospholipase C
Probab=98.96 E-value=7e-09 Score=120.19 Aligned_cols=120 Identities=22% Similarity=0.241 Sum_probs=92.9
Q ss_pred cEEEEEEEeeccCCccCcc---CCCCCCCCCeEEEEEEC-----CEEEEeecccCCCCCeeccEEEEEEeCCC-cEEEEE
Q 042999 618 VGILELGILGARGLLPMKT---KNGGKGSTDAYCVAKYG-----KKWVRTRTITDCFDPRWNEQYTWQVYDPC-TVLTVG 688 (1006)
Q Consensus 618 ~g~L~v~v~~a~~L~~~~~---~d~~~g~sdpyv~v~~~-----~~~~rT~~~~~~~nP~wne~~~~~v~~~~-~~l~i~ 688 (1006)
...|.|+|+.|++|+.... .+. ....||||+|.+- ....+|+++.++.||+|||+|.|++..+. ..|.|.
T Consensus 469 ~~~L~V~VisGq~l~lp~~~~~~~~-~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PELAllrf~ 547 (599)
T PLN02952 469 KKTLKVKVYLGDGWRLDFSHTHFDS-YSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPELALLRIE 547 (599)
T ss_pred cceEEEEEEECcccCCCCccccCCc-cCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCccEEEEE
Confidence 4679999999999853211 111 2345999999973 35679999999999999999999998875 578999
Q ss_pred EEECCCCCcCCCCCCCCceeEEEEEEcccccCCceEeeEEEeeeeccCCcccccEEEEEEEEe
Q 042999 689 VFDNWRMFADASEERPDYRIGKIRIRVSTLENNKVYTTSYPLLVLLRTGLKKMGEIELAVRFV 751 (1006)
Q Consensus 689 v~d~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~l~l~~~~~ 751 (1006)
|+|+|..+ .|+++|.+.||++.|..|- +|++|.+.... +.+..+|-++|.
T Consensus 548 V~D~D~~~-------~ddfiGq~~lPv~~Lr~Gy---R~VpL~~~~G~---~l~~a~Llv~f~ 597 (599)
T PLN02952 548 VREYDMSE-------KDDFGGQTCLPVSELRPGI---RSVPLHDKKGE---KLKNVRLLMRFI 597 (599)
T ss_pred EEecCCCC-------CCCeEEEEEcchhHhcCCc---eeEeCcCCCCC---CCCCEEEEEEEE
Confidence 99999876 7999999999999999885 68999765432 225556666654
No 216
>PF11696 DUF3292: Protein of unknown function (DUF3292); InterPro: IPR021709 This eukaryotic family of proteins has no known function.
Probab=98.92 E-value=2.8e-08 Score=113.60 Aligned_cols=74 Identities=26% Similarity=0.500 Sum_probs=65.5
Q ss_pred ccCCcccchHhhHHHHHHHHH-HHHHHHHHHHHhhccccccCcchhhHHHHHHHHHhhcCcchhHHHHHHHHHHhh
Q 042999 814 DADSHAWSMRKSKANWFRIVA-VLAWAIGLAKWLHNIRRWKNPVTTVLVHVLYLVLVWYPDLIVPTGFLYVVLIGV 888 (1006)
Q Consensus 814 ~~~~~~fs~~~~~~n~~rl~~-~l~~~~~~~~~~~~~~~W~~p~~t~~~~~~~~~~~~~p~l~~~~~~l~~~~~~~ 888 (1006)
.++...||...+++|+.||.. ++-.+..+...+.++.+|+.|.+|..++++|+++ |+.++++|+++..++++++
T Consensus 82 ~a~~e~FspdkLRa~lERlY~tv~v~~~~~~khi~RLrSW~eprRT~~fc~vYf~a-W~~dll~p~~~~~L~~li~ 156 (642)
T PF11696_consen 82 IAEDEEFSPDKLRANLERLYMTVVVGLAAFIKHIARLRSWREPRRTAAFCAVYFIA-WLLDLLVPAFFAFLIALIL 156 (642)
T ss_pred ccccccCChHHHHHHhHhheeehHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhc
Confidence 356788999999999999988 6678888999999999999999999999999765 8889999998887777766
No 217
>PLN02270 phospholipase D alpha
Probab=98.90 E-value=8.9e-09 Score=121.29 Aligned_cols=125 Identities=18% Similarity=0.288 Sum_probs=102.5
Q ss_pred ccEEEEEEEEecCCCCCC------------------CCCCCCcEEEEEECCeE-EEeeCcCCC-CCCeeeeEEEEEeeCC
Q 042999 15 VRKLVVEVVDARDLLPKD------------------GQGSSSPYVIADFDGQR-KRTSTKFRD-LNPVWNEPLEFIVSDP 74 (1006)
Q Consensus 15 ~~~L~V~v~~a~~L~~~~------------------~~g~~dPyv~v~~~~~~-~kT~~~~~t-~nP~wne~f~f~~~~~ 74 (1006)
-|.|.|+|.+|++|++++ ..+++||||.|.+++.+ .||+++.+. .||+|+|+|.+++...
T Consensus 7 hg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~v~rtr~~~~~~~~p~w~e~f~i~~ah~ 86 (808)
T PLN02270 7 HGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKARVGRTRKIENEPKNPRWYESFHIYCAHM 86 (808)
T ss_pred ecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCcEEEEEeecCCCCCCCccccceEEeeccC
Confidence 478999999999998631 13678999999998755 899999875 6999999999999886
Q ss_pred CCCCCceEEEEEEeCCCCCCCCCCCCceeEEEEEeCeeeeeeCCceeEEEEceecCCc-eeeeEEEEEEEEEEecCc
Q 042999 75 KNMDCEELEIEVYNDKRYCNGSGRKNHFLGRVKLCGSQFARRGDEGLVYFPLEKKSVF-SWIRGEIGLRIYYYDELS 150 (1006)
Q Consensus 75 ~~~~~~~L~i~V~d~d~~~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~~~-~~~~G~i~l~~~~~~~~~ 150 (1006)
-..+.|.|.|.|.+ +..+||.+.+++.+++ .+...+.||++.....+ .+..-.|++++.|.+...
T Consensus 87 ----~~~v~f~vkd~~~~------g~~~ig~~~~p~~~~~-~g~~i~~~~~~~~~~~~p~~~~~~~~~~~~f~~~~~ 152 (808)
T PLN02270 87 ----ASNIIFTVKDDNPI------GATLIGRAYIPVEEIL-DGEEVDRWVEILDNDKNPIHGGSKIHVKLQYFEVTK 152 (808)
T ss_pred ----cceEEEEEecCCcc------CceEEEEEEEEHHHhc-CCCccccEEeccCCCCCcCCCCCEEEEEEEEEEccc
Confidence 46899999999999 6679999999999964 56677889998765433 233359999999999764
No 218
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=98.90 E-value=7.7e-09 Score=93.62 Aligned_cols=89 Identities=44% Similarity=0.787 Sum_probs=78.3
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEECCe---EEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEeCCCCCC
Q 042999 18 LVVEVVDARDLLPKDGQGSSSPYVIADFDGQ---RKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYNDKRYCN 94 (1006)
Q Consensus 18 L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~~---~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~d~~~~ 94 (1006)
|.|+|++|++|......+..+|||++.+... ..+|+++.++.||.|||+|.|.+.... ...|.|+|||.+..
T Consensus 2 l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~---~~~l~i~v~~~~~~-- 76 (101)
T smart00239 2 LTVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPE---LAELEIEVYDKDRF-- 76 (101)
T ss_pred eEEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcc---cCEEEEEEEecCCc--
Confidence 6899999999988775568999999999864 799999999999999999999988753 56899999999887
Q ss_pred CCCCCCceeEEEEEeCeeee
Q 042999 95 GSGRKNHFLGRVKLCGSQFA 114 (1006)
Q Consensus 95 ~~~~~d~~lG~~~v~l~~l~ 114 (1006)
+.+.++|.+.+++.++.
T Consensus 77 ---~~~~~~G~~~~~l~~~~ 93 (101)
T smart00239 77 ---GRDDFIGQVTIPLSDLL 93 (101)
T ss_pred ---cCCceeEEEEEEHHHcc
Confidence 57899999999988863
No 219
>PLN02952 phosphoinositide phospholipase C
Probab=98.89 E-value=1.8e-08 Score=116.89 Aligned_cols=120 Identities=23% Similarity=0.275 Sum_probs=90.3
Q ss_pred cccEEEEEEEEecCCCCC------CCCCCCCcEEEEEEC-----CeEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceE
Q 042999 14 TVRKLVVEVVDARDLLPK------DGQGSSSPYVIADFD-----GQRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEEL 82 (1006)
Q Consensus 14 ~~~~L~V~v~~a~~L~~~------~~~g~~dPyv~v~~~-----~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L 82 (1006)
....|.|+|+.|.+|+.. +.....||||+|.+- ..+++|+++.++.||+|||+|.|.+..++ -.-|
T Consensus 468 ~~~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PE---LAll 544 (599)
T PLN02952 468 VKKTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPE---LALL 544 (599)
T ss_pred ccceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCC---ccEE
Confidence 357899999999987431 111235999999994 35689999999999999999999988864 3478
Q ss_pred EEEEEeCCCCCCCCCCCCceeEEEEEeCeeeeeeCCceeEEEEceecCCceeeeEEEEEEEEE
Q 042999 83 EIEVYNDKRYCNGSGRKNHFLGRVKLCGSQFARRGDEGLVYFPLEKKSVFSWIRGEIGLRIYY 145 (1006)
Q Consensus 83 ~i~V~d~d~~~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~ 145 (1006)
+|.|||+|.. +.++|+|++.+++..+ ..| .+|++|.+..+.....-.+.+++.|
T Consensus 545 rf~V~D~D~~-----~~ddfiGq~~lPv~~L-r~G---yR~VpL~~~~G~~l~~a~Llv~f~~ 598 (599)
T PLN02952 545 RIEVREYDMS-----EKDDFGGQTCLPVSEL-RPG---IRSVPLHDKKGEKLKNVRLLMRFIF 598 (599)
T ss_pred EEEEEecCCC-----CCCCeEEEEEcchhHh-cCC---ceeEeCcCCCCCCCCCEEEEEEEEe
Confidence 9999999988 6899999999999996 444 3589998654333223345555543
No 220
>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=98.89 E-value=5.6e-09 Score=113.97 Aligned_cols=120 Identities=26% Similarity=0.448 Sum_probs=101.2
Q ss_pred EEEEEEEeeccCCccCccCCCCCCCCCeEEEEEECCEEEEeecccCCCCCeec-cEEEEEEeCC---CcEEEEEEEECCC
Q 042999 619 GILELGILGARGLLPMKTKNGGKGSTDAYCVAKYGKKWVRTRTITDCFDPRWN-EQYTWQVYDP---CTVLTVGVFDNWR 694 (1006)
Q Consensus 619 g~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~~~~~rT~~~~~~~nP~wn-e~~~~~v~~~---~~~l~i~v~d~~~ 694 (1006)
|.|.|+|..|++||.||.. +...|.||.|++++..++|.+..+++||.|| +=|.|.|.|. ..+|.|.+.|+|.
T Consensus 3 gkl~vki~a~r~lpvmdka---sd~tdafveik~~n~t~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~dt 79 (1169)
T KOG1031|consen 3 GKLGVKIKAARHLPVMDKA---SDLTDAFVEIKFANTTFKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDT 79 (1169)
T ss_pred CcceeEEEeccCCcccccc---cccchheeEEEecccceehhhhhhhcCCcccccceEEecChhhhccCCeeEEEecccc
Confidence 7899999999999999853 5568999999999999999999999999999 5689999873 4689999999999
Q ss_pred CCcCCCCCCCCceeEEEEEEccccc----------CCceEeeEEEeeeeccCCcccccEEEEEEEEe
Q 042999 695 MFADASEERPDYRIGKIRIRVSTLE----------NNKVYTTSYPLLVLLRTGLKKMGEIELAVRFV 751 (1006)
Q Consensus 695 ~~~~~~~~~~d~~lG~~~i~l~~l~----------~~~~~~~~~~L~~~~~~g~~~~G~l~l~~~~~ 751 (1006)
.+ .+|-||++.|++..|. .|.....|||+.+.- .|. +|+|.+-++..
T Consensus 80 ys-------andaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdti-hgi--rgeinvivkvd 136 (1169)
T KOG1031|consen 80 YS-------ANDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDTI-HGI--RGEINVIVKVD 136 (1169)
T ss_pred cc-------cccccceeeeccChHHHHhHHhhhcCCceEEeeeeecceec-ccc--cceeEEEEEEe
Confidence 87 7889999999998763 245678999998743 232 49998877654
No 221
>PLN02230 phosphoinositide phospholipase C 4
Probab=98.86 E-value=2e-08 Score=116.28 Aligned_cols=121 Identities=17% Similarity=0.213 Sum_probs=92.0
Q ss_pred cEEEEEEEeeccCCccCccC---CCCCCCCCeEEEEEEC-----CEEEEeecccCCCCCeeccEEEEEEeCCC-cEEEEE
Q 042999 618 VGILELGILGARGLLPMKTK---NGGKGSTDAYCVAKYG-----KKWVRTRTITDCFDPRWNEQYTWQVYDPC-TVLTVG 688 (1006)
Q Consensus 618 ~g~L~v~v~~a~~L~~~~~~---d~~~g~sdpyv~v~~~-----~~~~rT~~~~~~~nP~wne~~~~~v~~~~-~~l~i~ 688 (1006)
..+|.|+|+.+++++..... +. ....||||+|.+- ....||++..++.||+|||+|.|++.-|. ..|+|.
T Consensus 468 ~~~L~V~VisGq~~~l~~~k~~~~~-~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPELAllRf~ 546 (598)
T PLN02230 468 KKTLKVKVCMGDGWLLDFKKTHFDS-YSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPELALLRVE 546 (598)
T ss_pred CcEEEEEEEEccCccCCCccccCCC-CCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCceeEEEEE
Confidence 45799999999997532111 12 3357999999982 33568998888999999999999998876 689999
Q ss_pred EEECCCCCcCCCCCCCCceeEEEEEEcccccCCceEeeEEEeeeeccCCcccccEEEEEEEE
Q 042999 689 VFDNWRMFADASEERPDYRIGKIRIRVSTLENNKVYTTSYPLLVLLRTGLKKMGEIELAVRF 750 (1006)
Q Consensus 689 v~d~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~l~l~~~~ 750 (1006)
|+|+|... +|+|+|+..||+..|+.|- +..+|.+....... .-.|.+++.|
T Consensus 547 V~d~d~~~-------~ddfiGQ~~lPv~~Lr~Gy---R~V~L~~~~G~~l~-~~~Ll~~f~~ 597 (598)
T PLN02230 547 VHEHDINE-------KDDFGGQTCLPVSEIRQGI---HAVPLFNRKGVKYS-STRLLMRFEF 597 (598)
T ss_pred EEECCCCC-------CCCEEEEEEcchHHhhCcc---ceEeccCCCcCCCC-CCeeEEEEEe
Confidence 99999865 7999999999999999884 56788775443322 2455555554
No 222
>PLN02222 phosphoinositide phospholipase C 2
Probab=98.85 E-value=3e-08 Score=114.58 Aligned_cols=121 Identities=20% Similarity=0.224 Sum_probs=91.7
Q ss_pred cEEEEEEEeeccCCc--cCcc-CCCCCCCCCeEEEEEEC-----CEEEEeecccCCCCCeeccEEEEEEeCCC-cEEEEE
Q 042999 618 VGILELGILGARGLL--PMKT-KNGGKGSTDAYCVAKYG-----KKWVRTRTITDCFDPRWNEQYTWQVYDPC-TVLTVG 688 (1006)
Q Consensus 618 ~g~L~v~v~~a~~L~--~~~~-~d~~~g~sdpyv~v~~~-----~~~~rT~~~~~~~nP~wne~~~~~v~~~~-~~l~i~ 688 (1006)
...|.|+|+.+++++ ..+. .+. ....||||.|.+- ....||+++.++.||+|||.|.|.+..|. ..|+|.
T Consensus 451 ~~~L~V~Visgq~~~l~~~~~~~~~-~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeLAllRf~ 529 (581)
T PLN02222 451 KTTLRVTIYMGEGWYFDFRHTHFDQ-YSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPELALLRLE 529 (581)
T ss_pred cceEEEEEEEcccccCCCCccccCC-CCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCceeEEEEE
Confidence 467999999999853 1111 112 3457999999983 34679999999999999999999998876 589999
Q ss_pred EEECCCCCcCCCCCCCCceeEEEEEEcccccCCceEeeEEEeeeeccCCcccccEEEEEEEE
Q 042999 689 VFDNWRMFADASEERPDYRIGKIRIRVSTLENNKVYTTSYPLLVLLRTGLKKMGEIELAVRF 750 (1006)
Q Consensus 689 v~d~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~l~l~~~~ 750 (1006)
|+|+|..+ .|+++|...||++.|+.|- +..+|.+....... .-.|-+.+.|
T Consensus 530 V~d~D~~~-------~ddfigq~~lPv~~Lr~Gy---R~V~L~~~~g~~l~-~a~Lfv~~~~ 580 (581)
T PLN02222 530 VHEYDMSE-------KDDFGGQTCLPVWELSQGI---RAFPLHSRKGEKYK-SVKLLVKVEF 580 (581)
T ss_pred EEECCCCC-------CCcEEEEEEcchhhhhCcc---ceEEccCCCcCCCC-CeeEEEEEEe
Confidence 99998765 7899999999999999884 57788775443322 2455555544
No 223
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=98.83 E-value=1.1e-08 Score=89.34 Aligned_cols=86 Identities=22% Similarity=0.314 Sum_probs=71.1
Q ss_pred EEEEEeeccCCccCccCCCCCCCCCeEEEEEECCE-EEEeecccCCCCCeeccEEEEEEeCCCcEEEEEEEECCCCCcCC
Q 042999 621 LELGILGARGLLPMKTKNGGKGSTDAYCVAKYGKK-WVRTRTITDCFDPRWNEQYTWQVYDPCTVLTVGVFDNWRMFADA 699 (1006)
Q Consensus 621 L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~~~-~~rT~~~~~~~nP~wne~~~~~v~~~~~~l~i~v~d~~~~~~~~ 699 (1006)
|.|+|..|+++.-...... .++.||||+|++++. .+||++ +.||.|||.|.|+| +....+.|.|||....
T Consensus 1 L~I~V~~~RdvdH~~~~~~-~~~~etyV~IKved~~kaRTr~---srnd~WnE~F~i~V-dk~nEiel~VyDk~~~---- 71 (109)
T cd08689 1 LTITITSARDVDHIASPRF-SKRPETYVSIKVEDVERARTKP---SRNDRWNEDFEIPV-EKNNEEEVIVYDKGGD---- 71 (109)
T ss_pred CEEEEEEEecCccccchhh-ccCCCcEEEEEECCEEEEeccC---CCCCcccceEEEEe-cCCcEEEEEEEeCCCC----
Confidence 5789999999965442224 778899999999866 889998 58999999999999 6788999999998643
Q ss_pred CCCCCCceeEEEEEEccccc
Q 042999 700 SEERPDYRIGKIRIRVSTLE 719 (1006)
Q Consensus 700 ~~~~~d~~lG~~~i~l~~l~ 719 (1006)
..-.||-.-|++++|.
T Consensus 72 ----~~~Pi~llW~~~sdi~ 87 (109)
T cd08689 72 ----QPVPVGLLWLRLSDIA 87 (109)
T ss_pred ----eecceeeehhhHHHHH
Confidence 4568999999999875
No 224
>PLN02228 Phosphoinositide phospholipase C
Probab=98.83 E-value=4.2e-08 Score=113.10 Aligned_cols=124 Identities=17% Similarity=0.160 Sum_probs=95.2
Q ss_pred cEEEEEEEeeccCCcc---CccCCCCCCCCCeEEEEEEC-----CEEEEeecccCCCCCee-ccEEEEEEeCCC-cEEEE
Q 042999 618 VGILELGILGARGLLP---MKTKNGGKGSTDAYCVAKYG-----KKWVRTRTITDCFDPRW-NEQYTWQVYDPC-TVLTV 687 (1006)
Q Consensus 618 ~g~L~v~v~~a~~L~~---~~~~d~~~g~sdpyv~v~~~-----~~~~rT~~~~~~~nP~w-ne~~~~~v~~~~-~~l~i 687 (1006)
...|.|+|++|++|+. .+..+. ....||||.|.+- ....||+++.++.||.| ||.|.|.+..|. ..|+|
T Consensus 430 ~~~L~I~ViSGq~l~lp~~~~~~~~-~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pELA~lRf 508 (567)
T PLN02228 430 KTTLKVKIYTGEGWDLDFHLTHFDQ-YSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPELALLWF 508 (567)
T ss_pred CceEEEEEEECCccCCCCCCCCCCC-CCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCceeEEEE
Confidence 3579999999999832 111122 3347999999972 34579999999999999 999999998876 58999
Q ss_pred EEEECCCCCcCCCCCCCCceeEEEEEEcccccCCceEeeEEEeeeeccCCcccccEEEEEEEEecC
Q 042999 688 GVFDNWRMFADASEERPDYRIGKIRIRVSTLENNKVYTTSYPLLVLLRTGLKKMGEIELAVRFVCP 753 (1006)
Q Consensus 688 ~v~d~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~l~l~~~~~~~ 753 (1006)
.|+|+|..+ .|+++|...||++.|+.|- +..+|.+....... ..+|-+.+.+.+.
T Consensus 509 ~V~D~d~~~-------~d~figq~~lPv~~Lr~GY---R~VpL~~~~G~~l~-~atLfv~~~~~~~ 563 (567)
T PLN02228 509 KVQDYDNDT-------QNDFAGQTCLPLPELKSGV---RAVRLHDRAGKAYK-NTRLLVSFALDPP 563 (567)
T ss_pred EEEeCCCCC-------CCCEEEEEEcchhHhhCCe---eEEEccCCCCCCCC-CeEEEEEEEEcCc
Confidence 999998765 7899999999999998874 56788775443322 3678888777643
No 225
>PLN02230 phosphoinositide phospholipase C 4
Probab=98.82 E-value=3e-08 Score=114.83 Aligned_cols=120 Identities=21% Similarity=0.338 Sum_probs=91.3
Q ss_pred cccEEEEEEEEecCCCCC------CCCCCCCcEEEEEEC-----CeEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceE
Q 042999 14 TVRKLVVEVVDARDLLPK------DGQGSSSPYVIADFD-----GQRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEEL 82 (1006)
Q Consensus 14 ~~~~L~V~v~~a~~L~~~------~~~g~~dPyv~v~~~-----~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L 82 (1006)
....|.|+|+.+.+++.. +.....||||+|.+- ..+++|++..++.||+|||+|.|.+..++ -..|
T Consensus 467 ~~~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPE---LAll 543 (598)
T PLN02230 467 PKKTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPE---LALL 543 (598)
T ss_pred cCcEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCc---eeEE
Confidence 457899999999986421 122346999999994 34579999999999999999999998875 3578
Q ss_pred EEEEEeCCCCCCCCCCCCceeEEEEEeCeeeeeeCCceeEEEEceecCCceeeeEEEEEEEEE
Q 042999 83 EIEVYNDKRYCNGSGRKNHFLGRVKLCGSQFARRGDEGLVYFPLEKKSVFSWIRGEIGLRIYY 145 (1006)
Q Consensus 83 ~i~V~d~d~~~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~ 145 (1006)
+|+|+|+|.. .+|+|+|+..+++..| ..| .+.++|.+..+..-..-.|.+++.+
T Consensus 544 Rf~V~d~d~~-----~~ddfiGQ~~lPv~~L-r~G---yR~V~L~~~~G~~l~~~~Ll~~f~~ 597 (598)
T PLN02230 544 RVEVHEHDIN-----EKDDFGGQTCLPVSEI-RQG---IHAVPLFNRKGVKYSSTRLLMRFEF 597 (598)
T ss_pred EEEEEECCCC-----CCCCEEEEEEcchHHh-hCc---cceEeccCCCcCCCCCCeeEEEEEe
Confidence 9999999987 6899999999999995 443 3467887655433223466666654
No 226
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=98.80 E-value=2.8e-08 Score=114.44 Aligned_cols=124 Identities=25% Similarity=0.419 Sum_probs=96.6
Q ss_pred CCCcccEEEEEEEEecCCCCCCC----CCCCCcEEEEEECC-----eEEEee-CcCCCCCCeeeeEEEEEeeCCCCCCCc
Q 042999 11 QQFTVRKLVVEVVDARDLLPKDG----QGSSSPYVIADFDG-----QRKRTS-TKFRDLNPVWNEPLEFIVSDPKNMDCE 80 (1006)
Q Consensus 11 ~~~~~~~L~V~v~~a~~L~~~~~----~g~~dPyv~v~~~~-----~~~kT~-~~~~t~nP~wne~f~f~~~~~~~~~~~ 80 (1006)
|.... .|.|.|+.+.++.+.-. +..+||||.|.+.| .+++|+ +..++.||.|+|+|+|.+..++ -.
T Consensus 612 ~~~~~-tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPE---LA 687 (746)
T KOG0169|consen 612 PPVKK-TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPE---LA 687 (746)
T ss_pred CCCCc-eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccc---ee
Confidence 33334 89999999997655322 35689999999954 348999 5568999999999999999986 35
Q ss_pred eEEEEEEeCCCCCCCCCCCCceeEEEEEeCeeeeeeCCceeEEEEceecCCceeeeEEEEEEEEEEe
Q 042999 81 ELEIEVYNDKRYCNGSGRKNHFLGRVKLCGSQFARRGDEGLVYFPLEKKSVFSWIRGEIGLRIYYYD 147 (1006)
Q Consensus 81 ~L~i~V~d~d~~~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~ 147 (1006)
-|+|.|+|+|.. ++|+|+|+.++|+..+ ..| ..-++|.+..+..-..-+|.+++.+.+
T Consensus 688 liRF~V~d~d~~-----~~ddF~GQ~tlP~~~L-~~G---yRhVpL~~~~G~~~~~asLfv~i~~~~ 745 (746)
T KOG0169|consen 688 LIRFEVHDYDYI-----GKDDFIGQTTLPVSEL-RQG---YRHVPLLSREGEALSSASLFVRIAIVE 745 (746)
T ss_pred EEEEEEEecCCC-----CcccccceeeccHHHh-hCc---eeeeeecCCCCccccceeEEEEEEEec
Confidence 789999999998 7899999999999995 444 345788876555445677778777654
No 227
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=98.78 E-value=1.1e-07 Score=106.62 Aligned_cols=182 Identities=18% Similarity=0.154 Sum_probs=125.2
Q ss_pred ccceeeeeecCCCCCCceecceeeeeeccCCCCcEEEEEEECCCC---ccccceeEEEEEeccccccccccCcccceEEe
Q 042999 490 QSARTRRGSMNNHSSSFHWHEDVFFVAAEPFEDSLILLVEDRTAK---DAAAVILGHAVVPVSSIDQRIDERHVASKWFP 566 (1006)
Q Consensus 490 ~~~kT~~~~~~~~t~nP~w~e~~~f~v~~~~~~~L~v~V~D~~~~---~~~d~~lG~~~i~l~~l~~~~~~~~~~~~w~~ 566 (1006)
+..+|.++. +.+||.|.+.|.+.......+.|++.++|.+.. -...+++|++.+.++.+...... ..-..
T Consensus 41 e~~rte~i~---~~~~p~f~~~~~l~y~fE~vQ~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs~~~~----~~~l~ 113 (529)
T KOG1327|consen 41 EVGRTEVIR---NVLNPFFTKKFLLQYRFEKVQLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVSSSGL----TGPLL 113 (529)
T ss_pred cccceeeee---ccCCccceeeechhheeeeeeeEEEEEeecCCccCCcchhcccceeeeehhhhhhhhhh----hhhhh
Confidence 344677664 899999999998888878888999999998743 11479999999999998754221 11122
Q ss_pred CcCCCCCCCccceeeeEEEEEeeeCCccccccccccCCCCCccccccCCCCcEEEEEEEeeccCCccCccCCCCCCCCCe
Q 042999 567 LEGSCGRGCARSYCGRIQLKLCLEGGYHVLDEAAHVCSDFRPTAKQLWKPPVGILELGILGARGLLPMKTKNGGKGSTDA 646 (1006)
Q Consensus 567 L~~~~~~~~~~~~~G~l~l~v~l~~~~~~~d~~~~~~~~~~p~~~~l~~~~~g~L~v~v~~a~~L~~~~~~d~~~g~sdp 646 (1006)
++.. .....|.|.+.+.-.. + + -....-.++|.+|.+ +|. .+++||
T Consensus 114 ~~~~-----~~~~~g~iti~aee~~--~--~---------------------~~~~~~~~~~~~ld~---kd~-f~ksd~ 159 (529)
T KOG1327|consen 114 LKPG-----KNAGSGTITISAEEDE--S--D---------------------NDVVQFSFRAKNLDP---KDF-FSKSDP 159 (529)
T ss_pred cccC-----ccCCcccEEEEeeccc--c--c---------------------CceeeeeeeeeecCc---ccc-cccCCc
Confidence 2211 1112466665542111 0 0 011122345788854 677 999999
Q ss_pred EEEEEE--C-C---EEEEeecccCCCCCeeccEEEEEEe-----CCCcEEEEEEEECCCCCcCCCCCCCCceeEEEEEEc
Q 042999 647 YCVAKY--G-K---KWVRTRTITDCFDPRWNEQYTWQVY-----DPCTVLTVGVFDNWRMFADASEERPDYRIGKIRIRV 715 (1006)
Q Consensus 647 yv~v~~--~-~---~~~rT~~~~~~~nP~wne~~~~~v~-----~~~~~l~i~v~d~~~~~~~~~~~~~d~~lG~~~i~l 715 (1006)
|..+.- + + ...||.++++++||.|.+ |.++.. ++...+.|.+||++..+ ++++||++..++
T Consensus 160 ~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~~-~~i~~~~l~~~~~~~~~~i~~~d~~~~~-------~~~~ig~~~tt~ 231 (529)
T KOG1327|consen 160 YLEFYKRVDDGSTQMLYRTEVVKNTLNPQWAP-FSISLQSLCSKDGNRPIQIECYDYDSNG-------KHDLIGKFQTTL 231 (529)
T ss_pred ceEEEEecCCCceeeccccceeccCCCCcccc-cccchhhhcccCCCCceEEEEeccCCCC-------CcCceeEecccH
Confidence 998874 2 2 245999999999999954 444432 45678999999999887 889999999999
Q ss_pred ccccC
Q 042999 716 STLEN 720 (1006)
Q Consensus 716 ~~l~~ 720 (1006)
+++..
T Consensus 232 ~~~~~ 236 (529)
T KOG1327|consen 232 SELQE 236 (529)
T ss_pred HHhcc
Confidence 98863
No 228
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=98.76 E-value=4.9e-08 Score=112.56 Aligned_cols=121 Identities=22% Similarity=0.319 Sum_probs=93.1
Q ss_pred EEEEEEeeccCCccCccCCCCCCCCCeEEEEEECC-----EEEEeecccC-CCCCeeccEEEEEEeCCC-cEEEEEEEEC
Q 042999 620 ILELGILGARGLLPMKTKNGGKGSTDAYCVAKYGK-----KWVRTRTITD-CFDPRWNEQYTWQVYDPC-TVLTVGVFDN 692 (1006)
Q Consensus 620 ~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~~-----~~~rT~~~~~-~~nP~wne~~~~~v~~~~-~~l~i~v~d~ 692 (1006)
+|.|+|+.++|+++......-+..+||||.|++-+ ...+|+++.+ +-||.|+|+|+|.+..|. +-|+|.|+|+
T Consensus 617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAliRF~V~d~ 696 (746)
T KOG0169|consen 617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELALIRFEVHDY 696 (746)
T ss_pred eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccceeEEEEEEEec
Confidence 89999999998766432211035689999999843 3568996664 679999999999999987 5789999999
Q ss_pred CCCCcCCCCCCCCceeEEEEEEcccccCCceEeeEEEeeeeccCCcccccEEEEEEEEe
Q 042999 693 WRMFADASEERPDYRIGKIRIRVSTLENNKVYTTSYPLLVLLRTGLKKMGEIELAVRFV 751 (1006)
Q Consensus 693 ~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~l~l~~~~~ 751 (1006)
|..+ +|||+|+..||++.|..|- +-.||.++.+... ...+|-+.+.+.
T Consensus 697 d~~~-------~ddF~GQ~tlP~~~L~~Gy---RhVpL~~~~G~~~-~~asLfv~i~~~ 744 (746)
T KOG0169|consen 697 DYIG-------KDDFIGQTTLPVSELRQGY---RHVPLLSREGEAL-SSASLFVRIAIV 744 (746)
T ss_pred CCCC-------cccccceeeccHHHhhCce---eeeeecCCCCccc-cceeEEEEEEEe
Confidence 9877 8999999999999999884 5578877543322 236677776664
No 229
>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=98.76 E-value=2.2e-08 Score=109.38 Aligned_cols=122 Identities=27% Similarity=0.419 Sum_probs=101.4
Q ss_pred cEEEEEEEEecCCCCCCC-CCCCCcEEEEEECCeEEEeeCcCCCCCCeee-eEEEEEeeCCCCCCCceEEEEEEeCCCCC
Q 042999 16 RKLVVEVVDARDLLPKDG-QGSSSPYVIADFDGQRKRTSTKFRDLNPVWN-EPLEFIVSDPKNMDCEELEIEVYNDKRYC 93 (1006)
Q Consensus 16 ~~L~V~v~~a~~L~~~~~-~g~~dPyv~v~~~~~~~kT~~~~~t~nP~wn-e~f~f~~~~~~~~~~~~L~i~V~d~d~~~ 93 (1006)
|.|.|.|+.|++|+-+|. ....|.||.+.+++..++|.+..+++||.|| ++|.|.+.+. +++++.|.|.+.|+|..
T Consensus 3 gkl~vki~a~r~lpvmdkasd~tdafveik~~n~t~ktdvf~kslnp~wnsdwfkfevdda-dlqdeplqi~lld~dty- 80 (1169)
T KOG1031|consen 3 GKLGVKIKAARHLPVMDKASDLTDAFVEIKFANTTFKTDVFLKSLNPQWNSDWFKFEVDDA-DLQDEPLQIRLLDHDTY- 80 (1169)
T ss_pred CcceeEEEeccCCcccccccccchheeEEEecccceehhhhhhhcCCcccccceEEecChh-hhccCCeeEEEeccccc-
Confidence 578899999999999986 3567999999999999999999999999999 8999999985 44589999999999999
Q ss_pred CCCCCCCceeEEEEEeCeeeeee---------CCceeEEEEceecCCceeeeEEEEEEEEE
Q 042999 94 NGSGRKNHFLGRVKLCGSQFARR---------GDEGLVYFPLEKKSVFSWIRGEIGLRIYY 145 (1006)
Q Consensus 94 ~~~~~~d~~lG~~~v~l~~l~~~---------~~~~~~w~~L~~~~~~~~~~G~i~l~~~~ 145 (1006)
+.+|-||.+.++++.+.-. +.....||++.+.- ...+|+|.+-+..
T Consensus 81 ----sandaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdti--hgirgeinvivkv 135 (1169)
T KOG1031|consen 81 ----SANDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDTI--HGIRGEINVIVKV 135 (1169)
T ss_pred ----ccccccceeeeccChHHHHhHHhhhcCCceEEeeeeecceec--ccccceeEEEEEE
Confidence 7999999999999976321 12223699988643 3468999877664
No 230
>PLN02222 phosphoinositide phospholipase C 2
Probab=98.75 E-value=8.4e-08 Score=110.99 Aligned_cols=120 Identities=20% Similarity=0.262 Sum_probs=90.4
Q ss_pred cccEEEEEEEEecCCC--C--C--CCCCCCCcEEEEEEC-----CeEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceE
Q 042999 14 TVRKLVVEVVDARDLL--P--K--DGQGSSSPYVIADFD-----GQRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEEL 82 (1006)
Q Consensus 14 ~~~~L~V~v~~a~~L~--~--~--~~~g~~dPyv~v~~~-----~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L 82 (1006)
....|.|+|+.+.++. . . +.....||||+|.+. ..+++|+++.++.||+|||+|.|.+..++ -.-|
T Consensus 450 ~~~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~Pe---LAll 526 (581)
T PLN02222 450 VKTTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPE---LALL 526 (581)
T ss_pred ccceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCc---eeEE
Confidence 3467999999998742 1 1 122456999999994 35689999999899999999999988765 3578
Q ss_pred EEEEEeCCCCCCCCCCCCceeEEEEEeCeeeeeeCCceeEEEEceecCCceeeeEEEEEEEEE
Q 042999 83 EIEVYNDKRYCNGSGRKNHFLGRVKLCGSQFARRGDEGLVYFPLEKKSVFSWIRGEIGLRIYY 145 (1006)
Q Consensus 83 ~i~V~d~d~~~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~ 145 (1006)
+|.|||+|.. +.++|+|+..+++..| ..| .+.++|.+..+..-..-.+.+++.+
T Consensus 527 Rf~V~d~D~~-----~~ddfigq~~lPv~~L-r~G---yR~V~L~~~~g~~l~~a~Lfv~~~~ 580 (581)
T PLN02222 527 RLEVHEYDMS-----EKDDFGGQTCLPVWEL-SQG---IRAFPLHSRKGEKYKSVKLLVKVEF 580 (581)
T ss_pred EEEEEECCCC-----CCCcEEEEEEcchhhh-hCc---cceEEccCCCcCCCCCeeEEEEEEe
Confidence 9999999987 6899999999999985 443 4567887655433223466666654
No 231
>PLN02352 phospholipase D epsilon
Probab=98.73 E-value=5.9e-08 Score=114.29 Aligned_cols=121 Identities=19% Similarity=0.247 Sum_probs=94.1
Q ss_pred CcEEEEEEEeeccCCccCcc--CCCCCCCCCeEEEEEECCEEE-EeecccCCCCCeeccEEEEEEeCCC-cEEEEEEEEC
Q 042999 617 PVGILELGILGARGLLPMKT--KNGGKGSTDAYCVAKYGKKWV-RTRTITDCFDPRWNEQYTWQVYDPC-TVLTVGVFDN 692 (1006)
Q Consensus 617 ~~g~L~v~v~~a~~L~~~~~--~d~~~g~sdpyv~v~~~~~~~-rT~~~~~~~nP~wne~~~~~v~~~~-~~l~i~v~d~ 692 (1006)
--|+|.++|++|+-+...-. ...+.+ .||||.|.+++.++ || .+..||+|||.|.+++.++. +.++|+|.|
T Consensus 8 lhg~l~~~i~~~~~~~~~~~~~~~~~~~-~~~y~tv~~~~~~v~rt---~~~~~p~w~e~f~i~~ah~~~~~~~f~vk~- 82 (758)
T PLN02352 8 FHGTLEATIFDATPYTPPFPFNCIFLNG-KATYVTIKIGNKKVAKT---SHEYDRVWNQTFQILCAHPLDSTITITLKT- 82 (758)
T ss_pred cccceEEEEEEeeehhhcccccccccCC-CCceEEEEeCCcEEecC---CCCCCCccccceeEEeeeecCCcEEEEEec-
Confidence 35899999999983322100 011122 39999999987765 88 56669999999999999987 789999998
Q ss_pred CCCCcCCCCCCCCceeEEEEEEcccccCCce-EeeEEEeeeeccCCcccccEEEEEEEEecCC
Q 042999 693 WRMFADASEERPDYRIGKIRIRVSTLENNKV-YTTSYPLLVLLRTGLKKMGEIELAVRFVCPS 754 (1006)
Q Consensus 693 ~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~-~~~~~~L~~~~~~g~~~~G~l~l~~~~~~~~ 754 (1006)
+ ..+||++.||+.+|..|.. .+.||++.+...+.... ..|+++++|.+-.
T Consensus 83 ---~--------~~~ig~~~~p~~~~~~g~~~~~~~~~~~~~~~~p~~~-~~~~~~~~~~~~~ 133 (758)
T PLN02352 83 ---K--------CSILGRFHIQAHQIVTEASFINGFFPLIMENGKPNPE-LKLRFMLWFRPAE 133 (758)
T ss_pred ---C--------CeEEEEEEEEHHHhhCCCcccceEEEcccCCCCCCCC-CEEEEEEEEEEhh
Confidence 2 4599999999999999865 89999999876554432 6999999999753
No 232
>PLN02228 Phosphoinositide phospholipase C
Probab=98.72 E-value=1.2e-07 Score=109.28 Aligned_cols=123 Identities=16% Similarity=0.197 Sum_probs=95.5
Q ss_pred ccEEEEEEEEecCCCC---CC---CCCCCCcEEEEEECC-----eEEEeeCcCCCCCCee-eeEEEEEeeCCCCCCCceE
Q 042999 15 VRKLVVEVVDARDLLP---KD---GQGSSSPYVIADFDG-----QRKRTSTKFRDLNPVW-NEPLEFIVSDPKNMDCEEL 82 (1006)
Q Consensus 15 ~~~L~V~v~~a~~L~~---~~---~~g~~dPyv~v~~~~-----~~~kT~~~~~t~nP~w-ne~f~f~~~~~~~~~~~~L 82 (1006)
...|.|+|++|.+|+. .+ .....||||+|.+.+ .+++|++++++.||+| ||+|.|.+..++ -.-|
T Consensus 430 ~~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pE---LA~l 506 (567)
T PLN02228 430 KTTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPE---LALL 506 (567)
T ss_pred CceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCc---eeEE
Confidence 4579999999998731 11 123479999999943 4579999988899999 999999998865 3578
Q ss_pred EEEEEeCCCCCCCCCCCCceeEEEEEeCeeeeeeCCceeEEEEceecCCceeeeEEEEEEEEEEecC
Q 042999 83 EIEVYNDKRYCNGSGRKNHFLGRVKLCGSQFARRGDEGLVYFPLEKKSVFSWIRGEIGLRIYYYDEL 149 (1006)
Q Consensus 83 ~i~V~d~d~~~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~~~ 149 (1006)
+|.|+|+|.. +.++|+|++.++++.| ..| .+.++|.+..+..-...+|.+++.+.+..
T Consensus 507 Rf~V~D~d~~-----~~d~figq~~lPv~~L-r~G---YR~VpL~~~~G~~l~~atLfv~~~~~~~~ 564 (567)
T PLN02228 507 WFKVQDYDND-----TQNDFAGQTCLPLPEL-KSG---VRAVRLHDRAGKAYKNTRLLVSFALDPPY 564 (567)
T ss_pred EEEEEeCCCC-----CCCCEEEEEEcchhHh-hCC---eeEEEccCCCCCCCCCeEEEEEEEEcCcc
Confidence 9999999987 6899999999999986 433 45688876654443457888888877653
No 233
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=98.67 E-value=5.5e-08 Score=85.11 Aligned_cols=84 Identities=27% Similarity=0.312 Sum_probs=70.5
Q ss_pred EEEEEEEecCCCCCC---CCCCCCcEEEEEECCe-EEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEeCCCCC
Q 042999 18 LVVEVVDARDLLPKD---GQGSSSPYVIADFDGQ-RKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYNDKRYC 93 (1006)
Q Consensus 18 L~V~v~~a~~L~~~~---~~g~~dPyv~v~~~~~-~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~d~~~ 93 (1006)
|.|+|..|+|+...+ ..+.+||||.+.+++. +.||++ +.||.|||+|.|.+.. ...+.+.|||....
T Consensus 1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved~~kaRTr~---srnd~WnE~F~i~Vdk-----~nEiel~VyDk~~~- 71 (109)
T cd08689 1 LTITITSARDVDHIASPRFSKRPETYVSIKVEDVERARTKP---SRNDRWNEDFEIPVEK-----NNEEEVIVYDKGGD- 71 (109)
T ss_pred CEEEEEEEecCccccchhhccCCCcEEEEEECCEEEEeccC---CCCCcccceEEEEecC-----CcEEEEEEEeCCCC-
Confidence 679999999998877 4678899999999875 788888 4899999999999954 56899999998654
Q ss_pred CCCCCCCceeEEEEEeCeeeee
Q 042999 94 NGSGRKNHFLGRVKLCGSQFAR 115 (1006)
Q Consensus 94 ~~~~~~d~~lG~~~v~l~~l~~ 115 (1006)
..-.+|..-+.+++|.+
T Consensus 72 -----~~~Pi~llW~~~sdi~E 88 (109)
T cd08689 72 -----QPVPVGLLWLRLSDIAE 88 (109)
T ss_pred -----eecceeeehhhHHHHHH
Confidence 55688988888888743
No 234
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=98.63 E-value=1.2e-08 Score=114.66 Aligned_cols=96 Identities=31% Similarity=0.482 Sum_probs=83.9
Q ss_pred CcccEEEEEEEEecCCCCCCCCCCCCcEEEEEECC-------eEEEeeCcCCCCCCeeeeEEEEEeeCCCC-CCCceEEE
Q 042999 13 FTVRKLVVEVVDARDLLPKDGQGSSSPYVIADFDG-------QRKRTSTKFRDLNPVWNEPLEFIVSDPKN-MDCEELEI 84 (1006)
Q Consensus 13 ~~~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~-------~~~kT~~~~~t~nP~wne~f~f~~~~~~~-~~~~~L~i 84 (1006)
++...|.|.|+.|+++.+-|.+|.+||||+|.+.. ..++|+|+.+|+||+|+|+|+|.+....- .....|.|
T Consensus 944 ~n~q~L~veVlhA~diipLD~NGlSDPFVviEl~P~~~fp~v~~q~T~V~~rtLnPVfDE~FeFsVp~e~c~te~Am~~F 1023 (1103)
T KOG1328|consen 944 GNAQTLVVEVLHAKDIIPLDSNGLSDPFVVIELIPKFRFPAVPVQKTKVVSRTLNPVFDETFEFSVPPEPCSTETAMLHF 1023 (1103)
T ss_pred ccccchhhhhhccccccccCCCCCCCCeEEEEeccccccccchhhhhhhhhccccchhhhheeeecCccccccccceEEE
Confidence 34567899999999999999999999999999974 23899999999999999999999987432 22567999
Q ss_pred EEEeCCCCCCCCCCCCceeEEEEEeCeee
Q 042999 85 EVYNDKRYCNGSGRKNHFLGRVKLCGSQF 113 (1006)
Q Consensus 85 ~V~d~d~~~~~~~~~d~~lG~~~v~l~~l 113 (1006)
+|+|+|.+ +.+||-|++.+.|+++
T Consensus 1024 TVMDHD~L-----~sNDFaGEA~L~Lg~v 1047 (1103)
T KOG1328|consen 1024 TVMDHDYL-----RSNDFAGEAFLELGDV 1047 (1103)
T ss_pred Eeecccee-----cccccchHHHHhhCCC
Confidence 99999999 8999999999999985
No 235
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=98.50 E-value=3.9e-07 Score=103.89 Aligned_cols=122 Identities=25% Similarity=0.374 Sum_probs=91.8
Q ss_pred ccEEEEEEEEecCCCCCCCCCCCCcEEEEEECC-----eE-EEeeCcCCCCCCeee-eEEEEEeeCCCCCCCceEEEEEE
Q 042999 15 VRKLVVEVVDARDLLPKDGQGSSSPYVIADFDG-----QR-KRTSTKFRDLNPVWN-EPLEFIVSDPKNMDCEELEIEVY 87 (1006)
Q Consensus 15 ~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~-----~~-~kT~~~~~t~nP~wn-e~f~f~~~~~~~~~~~~L~i~V~ 87 (1006)
...|.|.|+.|+.|+. .+.|.+.|||.|.+.| .+ ++|.+..+++||+|| |+|+|.+..++ -.-|+|.||
T Consensus 1064 p~~lsv~vigaRHL~k-~gr~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe---~A~lRF~V~ 1139 (1267)
T KOG1264|consen 1064 PMTLSVKVLGARHLPK-LGRSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPE---FAFLRFVVY 1139 (1267)
T ss_pred ceEEEEEEeecccccc-CCCCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCc---eEEEEEEEe
Confidence 3678999999999984 3456778999999942 33 555566799999999 99999999986 568999999
Q ss_pred eCCCCCCCCCCCCceeEEEEEeCeeeeeeCCceeEEEEceecCCceeeeEEEEEEEEEEecC
Q 042999 88 NDKRYCNGSGRKNHFLGRVKLCGSQFARRGDEGLVYFPLEKKSVFSWIRGEIGLRIYYYDEL 149 (1006)
Q Consensus 88 d~d~~~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~~~ 149 (1006)
|.|.+ +...|||++.+|+..+ +.| ..-++|.+.-...-....+.+.+...+..
T Consensus 1140 eeDmf-----s~~~FiaqA~yPv~~i-k~G---fRsVpLkN~ySEdlELaSLLv~i~m~~~~ 1192 (1267)
T KOG1264|consen 1140 EEDMF-----SDPNFLAQATYPVKAI-KSG---FRSVPLKNGYSEDLELASLLVFIEMRPVL 1192 (1267)
T ss_pred ccccc-----CCcceeeeeecchhhh-hcc---ceeeecccCchhhhhhhhheeeeEecccc
Confidence 99999 6677999999999985 443 34577876432222345566666665544
No 236
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=98.49 E-value=6.8e-07 Score=101.95 Aligned_cols=99 Identities=21% Similarity=0.324 Sum_probs=80.9
Q ss_pred EEEEEEEeeccCCccCccCCCCCCCCCeEEEEEEC-----CEEE-EeecccCCCCCeec-cEEEEEEeCCC-cEEEEEEE
Q 042999 619 GILELGILGARGLLPMKTKNGGKGSTDAYCVAKYG-----KKWV-RTRTITDCFDPRWN-EQYTWQVYDPC-TVLTVGVF 690 (1006)
Q Consensus 619 g~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~-----~~~~-rT~~~~~~~nP~wn-e~~~~~v~~~~-~~l~i~v~ 690 (1006)
-.|.|.|+.|+.|+. .|.|..-|||+|.+- ...+ +|.++.+++||+|| |.|+|.|.+|. .-|++.|+
T Consensus 1065 ~~lsv~vigaRHL~k-----~gr~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~A~lRF~V~ 1139 (1267)
T KOG1264|consen 1065 MTLSVKVLGARHLPK-----LGRSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEFAFLRFVVY 1139 (1267)
T ss_pred eEEEEEEeecccccc-----CCCCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCceEEEEEEEe
Confidence 578999999999974 226667799999972 3344 44556678999999 99999999986 57999999
Q ss_pred ECCCCCcCCCCCCCCceeEEEEEEcccccCCceEeeEEEeee
Q 042999 691 DNWRMFADASEERPDYRIGKIRIRVSTLENNKVYTTSYPLLV 732 (1006)
Q Consensus 691 d~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 732 (1006)
|+|.++ ...|||++..|+..|..|- +..||+.
T Consensus 1140 eeDmfs-------~~~FiaqA~yPv~~ik~Gf---RsVpLkN 1171 (1267)
T KOG1264|consen 1140 EEDMFS-------DPNFLAQATYPVKAIKSGF---RSVPLKN 1171 (1267)
T ss_pred cccccC-------Ccceeeeeecchhhhhccc---eeeeccc
Confidence 999997 5569999999999998873 6678865
No 237
>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins. C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc
Probab=98.23 E-value=2e-06 Score=77.55 Aligned_cols=110 Identities=22% Similarity=0.327 Sum_probs=80.7
Q ss_pred EEEEEeeccCCccCccC----C--C---CCCCCCeEEEEEE----CCEEEEeecccCCCCCeeccEEEEEEe--------
Q 042999 621 LELGILGARGLLPMKTK----N--G---GKGSTDAYCVAKY----GKKWVRTRTITDCFDPRWNEQYTWQVY-------- 679 (1006)
Q Consensus 621 L~v~v~~a~~L~~~~~~----d--~---~~g~sdpyv~v~~----~~~~~rT~~~~~~~nP~wne~~~~~v~-------- 679 (1006)
|.|.|++|.||.++-.. | . ..-..++||.+.+ +.+..+|+++.++..|.|+..++|++.
T Consensus 1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~G 80 (143)
T cd08683 1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSG 80 (143)
T ss_pred CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCC
Confidence 46889999999764210 1 0 0124689999995 477899999999999999999999875
Q ss_pred C--------CCcEEEEEEEECCCCCcCC---CCCCCCceeEEEEEEcccccCCc-eEeeEEEe
Q 042999 680 D--------PCTVLTVGVFDNWRMFADA---SEERPDYRIGKIRIRVSTLENNK-VYTTSYPL 730 (1006)
Q Consensus 680 ~--------~~~~l~i~v~d~~~~~~~~---~~~~~d~~lG~~~i~l~~l~~~~-~~~~~~~L 730 (1006)
. ....+.++||....-+... ..+.+|-+||.+.||+.+|...+ -.+.|||+
T Consensus 81 e~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~rsGitGW~pi 143 (143)
T cd08683 81 EAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTKRSGITGWYPI 143 (143)
T ss_pred ccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhcccCccccccC
Confidence 1 1348999999987643110 12457889999999999986543 35789985
No 238
>PLN02352 phospholipase D epsilon
Probab=98.08 E-value=1.8e-05 Score=93.78 Aligned_cols=120 Identities=16% Similarity=0.252 Sum_probs=88.8
Q ss_pred ccEEEEEEEEecCCCCC----C-CCCCCCcEEEEEECCeE-EEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEe
Q 042999 15 VRKLVVEVVDARDLLPK----D-GQGSSSPYVIADFDGQR-KRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYN 88 (1006)
Q Consensus 15 ~~~L~V~v~~a~~L~~~----~-~~g~~dPyv~v~~~~~~-~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d 88 (1006)
-|.|.++|.+|+-+... + .+...||||.|.+++.+ .|| .+..||+|+|+|.+++.... +..+.|.|.|
T Consensus 9 hg~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~~~v~rt---~~~~~p~w~e~f~i~~ah~~---~~~~~f~vk~ 82 (758)
T PLN02352 9 HGTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGNKKVAKT---SHEYDRVWNQTFQILCAHPL---DSTITITLKT 82 (758)
T ss_pred ccceEEEEEEeeehhhcccccccccCCCCceEEEEeCCcEEecC---CCCCCCccccceeEEeeeec---CCcEEEEEec
Confidence 47899999999844322 1 11223999999998755 688 55669999999999998863 2579999988
Q ss_pred CCCCCCCCCCCCceeEEEEEeCeeeeeeCCceeEEEEceecCCceeeeEEEEEEEEEEecCc
Q 042999 89 DKRYCNGSGRKNHFLGRVKLCGSQFARRGDEGLVYFPLEKKSVFSWIRGEIGLRIYYYDELS 150 (1006)
Q Consensus 89 ~d~~~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~~~~ 150 (1006)
. ..+||.+.+++.+++.-....+.||++.....+......|++++.|.+...
T Consensus 83 ~----------~~~ig~~~~p~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 134 (758)
T PLN02352 83 K----------CSILGRFHIQAHQIVTEASFINGFFPLIMENGKPNPELKLRFMLWFRPAEL 134 (758)
T ss_pred C----------CeEEEEEEEEHHHhhCCCcccceEEEcccCCCCCCCCCEEEEEEEEEEhhh
Confidence 1 378999999999975433337789998765433221259999999999875
No 239
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=97.98 E-value=7.1e-05 Score=84.63 Aligned_cols=179 Identities=17% Similarity=0.161 Sum_probs=118.1
Q ss_pred eeeeeeEeeccCCCCCCCCeeceEEEEeccCCCCCCCEEEEEEEcCC-------CCCccEEEEEeCCcCCCCCCCCCCCc
Q 042999 323 HYKKSKLASYRACDPHDSPEWNQVFALFHNKNDSVSATLEITVWDSP-------TENFLGGVCFDLSDVPVRDPPDSPLA 395 (1006)
Q Consensus 323 ~~~~T~~~~~~~~~~~~nP~wne~f~f~~~~~~~~~~~l~i~V~D~~-------~d~~lG~~~i~l~~l~~~~~~~~~~~ 395 (1006)
...+|.++ ...+||.|-+.|.....-.. ...|++.++|.+ ..+++|++...++++.........+
T Consensus 41 e~~rte~i-----~~~~~p~f~~~~~l~y~fE~--vQ~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs~~~~~~~l- 112 (529)
T KOG1327|consen 41 EVGRTEVI-----RNVLNPFFTKKFLLQYRFEK--VQLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVSSSGLTGPL- 112 (529)
T ss_pred cccceeee-----eccCCccceeeechhheeee--eeeEEEEEeecCCccCCcchhcccceeeeehhhhhhhhhhhhhh-
Confidence 34578888 99999999999987655544 578999999854 2799999999999887642111111
Q ss_pred ceeEEcccCCCCCCcceeeEEEEEEEeecCCCCcCccccCCCCCCccccccccccCCceEEEEEEEEEeecCcccCCCCC
Q 042999 396 PQWYRLEGEASDQNNRVSGDIQLAVWIGTQADEAFPEAWSSDAPYVTHTRSKVYQSPKLWYLRVTVMEAQDLCIAHNLPP 475 (1006)
Q Consensus 396 ~~w~~L~~~~~~~~~~~~g~l~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~p~~~~L~V~v~~a~~L~~~~~~d~ 475 (1006)
.++... ..-.|.|.... ..++ ++ .......++|++|... |.
T Consensus 113 ----~~~~~~----~~~~g~iti~a----ee~~-------~~-----------------~~~~~~~~~~~~ld~k---d~ 153 (529)
T KOG1327|consen 113 ----LLKPGK----NAGSGTITISA----EEDE-------SD-----------------NDVVQFSFRAKNLDPK---DF 153 (529)
T ss_pred ----hcccCc----cCCcccEEEEe----eccc-------cc-----------------CceeeeeeeeeecCcc---cc
Confidence 222111 11224443322 0000 00 0122334558888877 78
Q ss_pred CCCCCcEEEEEE--CC----ccceeeeeecCCCCCCceecceeeeeecc----CCCCcEEEEEEECCCCccccceeEEEE
Q 042999 476 LTAPEIRVKAQL--AL----QSARTRRGSMNNHSSSFHWHEDVFFVAAE----PFEDSLILLVEDRTAKDAAAVILGHAV 545 (1006)
Q Consensus 476 ~~~~dpyv~v~l--g~----~~~kT~~~~~~~~t~nP~w~e~~~f~v~~----~~~~~L~v~V~D~~~~~~~d~~lG~~~ 545 (1006)
.+++|||..+.- ++ ..++|.+.+ ++++|.|... ...... .....+.+.+||.+..+ ++++||.+.
T Consensus 154 f~ksd~~l~~~~~~~d~s~~~~~~tEv~~---n~l~p~w~~~-~i~~~~l~~~~~~~~~~i~~~d~~~~~-~~~~ig~~~ 228 (529)
T KOG1327|consen 154 FSKSDPYLEFYKRVDDGSTQMLYRTEVVK---NTLNPQWAPF-SISLQSLCSKDGNRPIQIECYDYDSNG-KHDLIGKFQ 228 (529)
T ss_pred cccCCcceEEEEecCCCceeeccccceec---cCCCCccccc-ccchhhhcccCCCCceEEEEeccCCCC-CcCceeEec
Confidence 899999998764 22 567888765 9999999983 222221 22347899999999765 579999999
Q ss_pred Eecccccc
Q 042999 546 VPVSSIDQ 553 (1006)
Q Consensus 546 i~l~~l~~ 553 (1006)
.+++++..
T Consensus 229 tt~~~~~~ 236 (529)
T KOG1327|consen 229 TTLSELQE 236 (529)
T ss_pred ccHHHhcc
Confidence 99998864
No 240
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=97.90 E-value=8.9e-06 Score=96.81 Aligned_cols=108 Identities=21% Similarity=0.265 Sum_probs=88.0
Q ss_pred cEEEEEEEEecCCCCCCCCCCCCcEEEEEEC-----CeEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEeCC
Q 042999 16 RKLVVEVVDARDLLPKDGQGSSSPYVIADFD-----GQRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYNDK 90 (1006)
Q Consensus 16 ~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~-----~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~d 90 (1006)
+.|.|.|.-|++|.--..+..+||||+.++. ..++||+++++|.||.|||.+.+.....+.+..+.|.+.||..+
T Consensus 1524 ~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~p~~~l~qReLQ~sVls~~ 1603 (1639)
T KOG0905|consen 1524 GTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYDGFPKEILQQRELQVSVLSNG 1603 (1639)
T ss_pred ceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccccCCCchhhheeecCCchhhhhhheeeeeeeccc
Confidence 5788999999999655556789999999995 24589999999999999999998854444444678999999999
Q ss_pred CCCCCCCCCCceeEEEEEeCeeeeeeCCceeEEEEceec
Q 042999 91 RYCNGSGRKNHFLGRVKLCGSQFARRGDEGLVYFPLEKK 129 (1006)
Q Consensus 91 ~~~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~ 129 (1006)
.+ ..+-|+|.+.++|.++ ........||+|...
T Consensus 1604 ~~-----~en~~lg~v~i~L~~~-~l~kE~~~Wy~lg~~ 1636 (1639)
T KOG0905|consen 1604 GL-----LENVFLGGVNIPLLKV-DLLKESVGWYNLGAC 1636 (1639)
T ss_pred ce-----eeeeeeeeeecchhhc-chhhhhcceeecccc
Confidence 88 6889999999999985 444444579999753
No 241
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=97.71 E-value=4.6e-05 Score=91.00 Aligned_cols=104 Identities=19% Similarity=0.260 Sum_probs=84.9
Q ss_pred cEEEEEEEeeccCCccCccCCCCCCCCCeEEEEEECC-----EEEEeecccCCCCCeeccEEEEEEe---C-CCcEEEEE
Q 042999 618 VGILELGILGARGLLPMKTKNGGKGSTDAYCVAKYGK-----KWVRTRTITDCFDPRWNEQYTWQVY---D-PCTVLTVG 688 (1006)
Q Consensus 618 ~g~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~~-----~~~rT~~~~~~~nP~wne~~~~~v~---~-~~~~l~i~ 688 (1006)
.|+|.|.|.-|+||+-.. . +...||||+.++-. .+.||+++.+|.||.|||.....-. . ....|.+.
T Consensus 1523 ~~~LtImV~H~K~L~~Lq---d-g~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~p~~~l~qReLQ~s 1598 (1639)
T KOG0905|consen 1523 NGTLTIMVMHAKGLALLQ---D-GQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYDGFPKEILQQRELQVS 1598 (1639)
T ss_pred CceEEEEhhhhccccccc---C-CCCCCcceeEEecCCchHhhhhhhccccccCCCchhhheeecCCchhhhhhheeeee
Confidence 589999999999995542 1 55689999999832 2568999999999999998876532 2 23589999
Q ss_pred EEECCCCCcCCCCCCCCceeEEEEEEcccccCCceEeeEEEeee
Q 042999 689 VFDNWRMFADASEERPDYRIGKIRIRVSTLENNKVYTTSYPLLV 732 (1006)
Q Consensus 689 v~d~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 732 (1006)
||..+.+. .+.+||.+.|+|.++.-.+....||+|..
T Consensus 1599 Vls~~~~~-------en~~lg~v~i~L~~~~l~kE~~~Wy~lg~ 1635 (1639)
T KOG0905|consen 1599 VLSNGGLL-------ENVFLGGVNIPLLKVDLLKESVGWYNLGA 1635 (1639)
T ss_pred eeccccee-------eeeeeeeeecchhhcchhhhhcceeeccc
Confidence 99999887 78999999999999887776679999943
No 242
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=97.66 E-value=0.025 Score=62.15 Aligned_cols=239 Identities=13% Similarity=0.148 Sum_probs=153.9
Q ss_pred EEEEEEEeecCcccCCCCCCCCCCcEEEEEECCccceeeeeecCCCCCCceecceeeeeec-------cCCCCcEEEEEE
Q 042999 457 LRVTVMEAQDLCIAHNLPPLTAPEIRVKAQLALQSARTRRGSMNNHSSSFHWHEDVFFVAA-------EPFEDSLILLVE 529 (1006)
Q Consensus 457 L~V~v~~a~~L~~~~~~d~~~~~dpyv~v~lg~~~~kT~~~~~~~~t~nP~w~e~~~f~v~-------~~~~~~L~v~V~ 529 (1006)
+.|.|++|+|.+.. ..-...|..+++++...|-.+. .+.+|.||.++...+. ......|++++|
T Consensus 2 ivl~i~egr~F~~~------~~~~~vv~a~~ng~~l~TDpv~---~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~ 72 (340)
T PF12416_consen 2 IVLSILEGRNFPQR------PRHPIVVEAKFNGESLETDPVP---HTESPQFNTELAWECDRKALKQHRLQRTPIKLQCF 72 (340)
T ss_pred EEEEEecccCCCCC------CCccEEEEEEeCCceeeecCCC---CCCCceeecceeeeccHHHHHHhhccCCceEEEEE
Confidence 57899999999832 3457789999999999999765 7889999998876542 122347899999
Q ss_pred ECCCCccccceeEEEEEecccc---ccccccCcccceEEeCcCCCCCCCccceeeeEEEEEeeeCCccccccccc-----
Q 042999 530 DRTAKDAAAVILGHAVVPVSSI---DQRIDERHVASKWFPLEGSCGRGCARSYCGRIQLKLCLEGGYHVLDEAAH----- 601 (1006)
Q Consensus 530 D~~~~~~~d~~lG~~~i~l~~l---~~~~~~~~~~~~w~~L~~~~~~~~~~~~~G~l~l~v~l~~~~~~~d~~~~----- 601 (1006)
-.+......+.||.+.+||... .. .+.....+||+|-+... +-.+.+-+|++.+++............
T Consensus 73 a~~~~~~~re~iGyv~LdLRsa~~~~~--~~~~~~~~W~~LL~~~~--~y~~~KPEl~l~l~ie~~~~~~~~~~~~~~~~ 148 (340)
T PF12416_consen 73 AVDGSTGKRESIGYVVLDLRSAVVPQE--KNQKQKPKWYKLLSSSS--KYKKHKPELLLSLSIEDDSKPQTPDFESFKAK 148 (340)
T ss_pred EecCCCCcceeccEEEEEccccccccc--cccccCCCeeEcccccc--ccccCCccEEEEEEEeccccccCCcccccccc
Confidence 8873222589999999999988 32 22245788999987633 223345678888877653321000000
Q ss_pred cCCC-----------CCccc--ccc------C-------CCCcEEEEEEEeeccCCccCccCCC-C-CCCCCeEEEEEEC
Q 042999 602 VCSD-----------FRPTA--KQL------W-------KPPVGILELGILGARGLLPMKTKNG-G-KGSTDAYCVAKYG 653 (1006)
Q Consensus 602 ~~~~-----------~~p~~--~~l------~-------~~~~g~L~v~v~~a~~L~~~~~~d~-~-~g~sdpyv~v~~~ 653 (1006)
..++ ..+.. -.+ . ..+.-.|.|+|-.|.||..+..... + .+.+.-|...++-
T Consensus 149 ~~p~~~~~~~~~~~~~~~~~l~~~l~~~eg~lQIGp~~~~~d~FvLsvti~~a~nL~~Lip~~l~~~~~~~~f~f~Ysll 228 (340)
T PF12416_consen 149 PAPPRQGHVPPPNSLLSPATLIPVLLEDEGLLQIGPPDLCCDLFVLSVTIKFAENLEQLIPSSLPEEQNHSGFFFYYSLL 228 (340)
T ss_pred CCCcccCCCcccccccCccceeEEEccCCceEeeCCchhcCceEEEEEehhhhhhHHhhccccccccCCCccEEEEEEec
Confidence 0000 00000 000 0 1235578899999999866521111 0 1335666777775
Q ss_pred CEEEEeecccCCCCCeec-cEEE-EEEeC----------CCcEEEEEEEECCCCCcCCCCCCCCceeEEEEEEcccccC
Q 042999 654 KKWVRTRTITDCFDPRWN-EQYT-WQVYD----------PCTVLTVGVFDNWRMFADASEERPDYRIGKIRIRVSTLEN 720 (1006)
Q Consensus 654 ~~~~rT~~~~~~~nP~wn-e~~~-~~v~~----------~~~~l~i~v~d~~~~~~~~~~~~~d~~lG~~~i~l~~l~~ 720 (1006)
+.-+.|.-.....+|.+- +.-. +.+.. ....|.|.++-. +..||.+.|++..+..
T Consensus 229 Gn~Vt~~~F~~l~~~~f~~er~s~vRirSS~~~L~~yf~~~~~L~I~Lc~g------------~~~Lg~~~v~l~~Ll~ 295 (340)
T PF12416_consen 229 GNDVTTEPFKSLSSPSFPPERASGVRIRSSLRVLRRYFQQIPKLQIHLCCG------------NQSLGSTSVPLQPLLP 295 (340)
T ss_pred CcEeEeeeccccCCCCcCeeeeeEEeecccHHHHHHHHhhCCCeEEEEeeC------------CcEEEEEEEEhhhccC
Confidence 567888888888888775 3333 66643 234688888764 4589999999998853
No 243
>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins. C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc
Probab=97.62 E-value=4.6e-05 Score=68.94 Aligned_cols=109 Identities=21% Similarity=0.331 Sum_probs=80.2
Q ss_pred EEEEEEEecCCCCCCC-------------CCCCCcEEEEEE----CCeEEEeeCcCCCCCCeeeeEEEEEeeC-------
Q 042999 18 LVVEVVDARDLLPKDG-------------QGSSSPYVIADF----DGQRKRTSTKFRDLNPVWNEPLEFIVSD------- 73 (1006)
Q Consensus 18 L~V~v~~a~~L~~~~~-------------~g~~dPyv~v~~----~~~~~kT~~~~~t~nP~wne~f~f~~~~------- 73 (1006)
|.|.|++|.+|..... .-..|+||.+.+ ++..++|+++-++..|.|+-.++|.+.-
T Consensus 1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~G 80 (143)
T cd08683 1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSG 80 (143)
T ss_pred CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCC
Confidence 4688889888865311 112589999996 3577999999999999999999998761
Q ss_pred -----CCCCCCceEEEEEEeCCCCCCC-----CCCCCceeEEEEEeCeeeeeeCCceeEEEEc
Q 042999 74 -----PKNMDCEELEIEVYNDKRYCNG-----SGRKNHFLGRVKLCGSQFARRGDEGLVYFPL 126 (1006)
Q Consensus 74 -----~~~~~~~~L~i~V~d~d~~~~~-----~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L 126 (1006)
.+.+....+.|+||+.+..+-+ ...+|-.||.+.+|+.+++........||++
T Consensus 81 e~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~rsGitGW~pi 143 (143)
T cd08683 81 EAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTKRSGITGWYPI 143 (143)
T ss_pred ccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhcccCccccccC
Confidence 0123467899999998754211 1246678999999999987766666679875
No 244
>PLN02964 phosphatidylserine decarboxylase
Probab=97.40 E-value=0.00024 Score=84.04 Aligned_cols=100 Identities=22% Similarity=0.312 Sum_probs=78.5
Q ss_pred CcEEEEEEEeeccCCccCccCCCCCCCCCeEEEE-EECCEEEEeecccCCCCCeeccEEEEEEeCCC-cEEEEEEEECCC
Q 042999 617 PVGILELGILGARGLLPMKTKNGGKGSTDAYCVA-KYGKKWVRTRTITDCFDPRWNEQYTWQVYDPC-TVLTVGVFDNWR 694 (1006)
Q Consensus 617 ~~g~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v-~~~~~~~rT~~~~~~~nP~wne~~~~~v~~~~-~~l~i~v~d~~~ 694 (1006)
-.|...+++++|+ |+ . .|+|+++ .+|.+.+||.+.++|+||+||+...|.|.... ...+|.|||++.
T Consensus 52 ~~~~~~~~~~~~~----~~-----~--~~~~~~~~~~g~~~f~t~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (644)
T PLN02964 52 FSGIALLTLVGAE----MK-----F--KDKWLACVSFGEQTFRTETSDSTDKPVWNSEKKLLLEKNGPHLARISVFETNR 120 (644)
T ss_pred ccCeEEEEeehhh----hc-----c--CCcEEEEEEecceeeeeccccccCCcccchhhceEeccCCcceEEEEEEecCC
Confidence 4689999999997 32 2 5888655 57999999999999999999999999997633 346999999999
Q ss_pred CCcCCCCCCCCceeEEEEEEcccccCCce--EeeEEEeeeec
Q 042999 695 MFADASEERPDYRIGKIRIRVSTLENNKV--YTTSYPLLVLL 734 (1006)
Q Consensus 695 ~~~~~~~~~~d~~lG~~~i~l~~l~~~~~--~~~~~~L~~~~ 734 (1006)
+. +++++|.++++|.++...+. ....|.+.+.+
T Consensus 121 ~s-------~n~lv~~~e~~~t~f~~kqi~elkeaF~lfD~d 155 (644)
T PLN02964 121 LS-------KNTLVGYCELDLFDFVTQEPESACESFDLLDPS 155 (644)
T ss_pred CC-------HHHhhhheeecHhhccHHHHHHHHHHHHHHCCC
Confidence 87 89999999999988765432 12335555543
No 245
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=97.01 E-value=0.0012 Score=55.59 Aligned_cols=88 Identities=16% Similarity=0.248 Sum_probs=63.2
Q ss_pred EEEEEEeecCcccCCCCCCCCCCcEEEEEE--CC-ccceeeeeecCCCCCCceecceeeeeeccCC--CCcEEEEEEECC
Q 042999 458 RVTVMEAQDLCIAHNLPPLTAPEIRVKAQL--AL-QSARTRRGSMNNHSSSFHWHEDVFFVAAEPF--EDSLILLVEDRT 532 (1006)
Q Consensus 458 ~V~v~~a~~L~~~~~~d~~~~~dpyv~v~l--g~-~~~kT~~~~~~~~t~nP~w~e~~~f~v~~~~--~~~L~v~V~D~~ 532 (1006)
.|+|+.|+||--.. .-+..+..|++--+ .. -..||... ..+.||+|.|+|.|.+.... .-.|.|.|+...
T Consensus 2 witv~~c~d~s~~~--~~~e~~~i~ikg~~tl~kpv~~KsS~r---rgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~~~ 76 (103)
T cd08684 2 WITVLKCKDLSWPS--SCGENPTIYIKGILTLPKPVHFKSSAK---EGSNDIEFMETFVFAIKLQNLQTVRLVFKIQTQT 76 (103)
T ss_pred EEEEEEeccccccc--ccCcCCeeEEEEEEecCCCccccchhh---cCCCChhHHHHHHHHHHHhhccceEEEEEeeccC
Confidence 58899999997542 33445677887555 22 33455543 48899999999999876444 336888888843
Q ss_pred CCccccceeEEEEEecccccc
Q 042999 533 AKDAAAVILGHAVVPVSSIDQ 553 (1006)
Q Consensus 533 ~~~~~d~~lG~~~i~l~~l~~ 553 (1006)
.+ .+.||.|.+.|.++..
T Consensus 77 -~R--Ke~iG~~sL~l~s~ge 94 (103)
T cd08684 77 -PR--KRTIGECSLSLRTLST 94 (103)
T ss_pred -Cc--cceeeEEEeecccCCH
Confidence 33 7899999999998875
No 246
>PLN02964 phosphatidylserine decarboxylase
Probab=96.99 E-value=0.0011 Score=78.45 Aligned_cols=88 Identities=22% Similarity=0.300 Sum_probs=72.4
Q ss_pred cccEEEEEEEEecCCCCCCCCCCCCcEEE-EEECCeEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEeCCCC
Q 042999 14 TVRKLVVEVVDARDLLPKDGQGSSSPYVI-ADFDGQRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYNDKRY 92 (1006)
Q Consensus 14 ~~~~L~V~v~~a~~L~~~~~~g~~dPyv~-v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~d~~ 92 (1006)
-.|...+++++|+ ++ ..|+|.. +.+|.+.+||.+.++|+||+||+...|.+...+ ....+|.|||.+++
T Consensus 52 ~~~~~~~~~~~~~----~~---~~~~~~~~~~~g~~~f~t~~~~~~~~p~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 121 (644)
T PLN02964 52 FSGIALLTLVGAE----MK---FKDKWLACVSFGEQTFRTETSDSTDKPVWNSEKKLLLEKNG---PHLARISVFETNRL 121 (644)
T ss_pred ccCeEEEEeehhh----hc---cCCcEEEEEEecceeeeeccccccCCcccchhhceEeccCC---cceEEEEEEecCCC
Confidence 3478889999987 33 3578655 566888999999999999999999999987754 34569999999999
Q ss_pred CCCCCCCCceeEEEEEeCeeeeee
Q 042999 93 CNGSGRKNHFLGRVKLCGSQFARR 116 (1006)
Q Consensus 93 ~~~~~~~d~~lG~~~v~l~~l~~~ 116 (1006)
+.++++|.+++++.++...
T Consensus 122 -----s~n~lv~~~e~~~t~f~~k 140 (644)
T PLN02964 122 -----SKNTLVGYCELDLFDFVTQ 140 (644)
T ss_pred -----CHHHhhhheeecHhhccHH
Confidence 8999999999999886443
No 247
>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]
Probab=96.96 E-value=0.0011 Score=71.41 Aligned_cols=118 Identities=23% Similarity=0.275 Sum_probs=91.3
Q ss_pred EEEEEEeeccCCccCccCCCCCCCCCeEEEEEEC-----CEEEEeecccCCCCCeeccEEEEEEeC-CC-----------
Q 042999 620 ILELGILGARGLLPMKTKNGGKGSTDAYCVAKYG-----KKWVRTRTITDCFDPRWNEQYTWQVYD-PC----------- 682 (1006)
Q Consensus 620 ~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~-----~~~~rT~~~~~~~nP~wne~~~~~v~~-~~----------- 682 (1006)
.|++.|+++.+++... + .-..|-|+.+.+. .+..+|.++++|.+|.|+|.|.+.+.. +.
T Consensus 368 elel~ivrg~~~pvp~---g-p~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr 443 (523)
T KOG3837|consen 368 ELELAIVRGQKNPVPG---G-PMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKR 443 (523)
T ss_pred HhHHHHhhcccCCCCC---C-chhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHh
Confidence 5677888988886531 1 2235789888872 345688899999999999999999875 21
Q ss_pred cEEEEEEEECCCCCcCCCCCCCCceeEEEEEEcccccCCceEeeEEEeeeeccCCcc-cccEEEEEEEEe
Q 042999 683 TVLTVGVFDNWRMFADASEERPDYRIGKIRIRVSTLENNKVYTTSYPLLVLLRTGLK-KMGEIELAVRFV 751 (1006)
Q Consensus 683 ~~l~i~v~d~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~-~~G~l~l~~~~~ 751 (1006)
--+.|++|.+..+. .+|.++|.+.|.|..|++.-.....|+|.+ |++ -.|.|++.++..
T Consensus 444 ~g~kfeifhkggf~------rSdkl~gt~nikle~Len~cei~e~~~l~D----GRK~vGGkLevKvRiR 503 (523)
T KOG3837|consen 444 LGKKFEIFHKGGFN------RSDKLTGTGNIKLEILENMCEICEYLPLKD----GRKAVGGKLEVKVRIR 503 (523)
T ss_pred cCeeEEEeeccccc------cccceeceeeeeehhhhcccchhhceeccc----cccccCCeeEEEEEEe
Confidence 15899999998776 479999999999999988766678899976 333 249999998876
No 248
>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.82 E-value=0.00075 Score=72.14 Aligned_cols=108 Identities=23% Similarity=0.276 Sum_probs=85.7
Q ss_pred CCcEEEEEEEeeccCCccCccCCCCCCCCCeEEEEEE-CCE----EEEeecccCCCCCeeccEEEEEEeCCCcEEEEEEE
Q 042999 616 PPVGILELGILGARGLLPMKTKNGGKGSTDAYCVAKY-GKK----WVRTRTITDCFDPRWNEQYTWQVYDPCTVLTVGVF 690 (1006)
Q Consensus 616 ~~~g~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~-~~~----~~rT~~~~~~~nP~wne~~~~~v~~~~~~l~i~v~ 690 (1006)
...|.|+|.|++|++|.+.- +....++|||.|++ ++. ..+|+...+|++|.+.++..|.-..+...|.++||
T Consensus 266 d~~g~l~vEii~ar~l~~k~---~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~sp~~k~Lq~tv~ 342 (405)
T KOG2060|consen 266 DSKGDLEVEIIRARGLVVKP---GSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQSPPGKYLQGTVW 342 (405)
T ss_pred cccCceeEEEEecccccccC---CcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhccCCCccEEEEEEe
Confidence 35799999999999998732 21336899999997 332 33788888999998888888887778889999998
Q ss_pred E-CCCCCcCCCCCCCCceeEEEEEEcccccCCc-eEeeEEEeeee
Q 042999 691 D-NWRMFADASEERPDYRIGKIRIRVSTLENNK-VYTTSYPLLVL 733 (1006)
Q Consensus 691 d-~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~-~~~~~~~L~~~ 733 (1006)
- +.++- .+.|+|-+.|-+.+|.... ....||+|...
T Consensus 343 gdygRmd-------~k~fmg~aqi~l~eL~ls~~~~igwyKlfgs 380 (405)
T KOG2060|consen 343 GDYGRMD-------HKSFMGVAQIMLDELNLSSSPVIGWYKLFGS 380 (405)
T ss_pred ccccccc-------hHHHhhHHHHHhhhhccccccceeeeeccCC
Confidence 5 34433 7889999999999998765 67899999764
No 249
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=96.74 E-value=0.0013 Score=55.30 Aligned_cols=97 Identities=12% Similarity=0.153 Sum_probs=67.7
Q ss_pred EEEEEEecCCCCCCC-CCCCCcEEEEEE--C-CeEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEeCCCCCC
Q 042999 19 VVEVVDARDLLPKDG-QGSSSPYVIADF--D-GQRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYNDKRYCN 94 (1006)
Q Consensus 19 ~V~v~~a~~L~~~~~-~g~~dPyv~v~~--~-~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~d~~~~ 94 (1006)
-++++.++||.-... +....-|++=.+ . ...+||+..+...||+|.|+|.|.+.-.. +.+-.|-|.|++ ..
T Consensus 2 witv~~c~d~s~~~~~~e~~~i~ikg~~tl~kpv~~KsS~rrgs~d~~f~ETFVFqi~l~q-L~~V~L~fsv~~--~~-- 76 (103)
T cd08684 2 WITVLKCKDLSWPSSCGENPTIYIKGILTLPKPVHFKSSAKEGSNDIEFMETFVFAIKLQN-LQTVRLVFKIQT--QT-- 76 (103)
T ss_pred EEEEEEecccccccccCcCCeeEEEEEEecCCCccccchhhcCCCChhHHHHHHHHHHHhh-ccceEEEEEeec--cC--
Confidence 378899999853322 222334555333 2 35589999999999999999999987643 336688999998 34
Q ss_pred CCCCCCceeEEEEEeCeeeeeeCCceeEEEE
Q 042999 95 GSGRKNHFLGRVKLCGSQFARRGDEGLVYFP 125 (1006)
Q Consensus 95 ~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~ 125 (1006)
.+...||.|.+.++++ . .+...+|..
T Consensus 77 ---~RKe~iG~~sL~l~s~-g-eeE~~HW~e 102 (103)
T cd08684 77 ---PRKRTIGECSLSLRTL-S-TQETDHWLE 102 (103)
T ss_pred ---CccceeeEEEeecccC-C-HHHhhhhhc
Confidence 4789999999999984 2 223345643
No 250
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=96.66 E-value=0.018 Score=63.30 Aligned_cols=121 Identities=18% Similarity=0.197 Sum_probs=93.5
Q ss_pred EEEEEeeccCCccCccCCCCCCCCCeEEEEEECCEEEEeecccCCCCCeeccEEEEEEeC--------CCcEEEEEEEEC
Q 042999 621 LELGILGARGLLPMKTKNGGKGSTDAYCVAKYGKKWVRTRTITDCFDPRWNEQYTWQVYD--------PCTVLTVGVFDN 692 (1006)
Q Consensus 621 L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~~~~~rT~~~~~~~nP~wne~~~~~v~~--------~~~~l~i~v~d~ 692 (1006)
+.|.|++|+|.+.. .+-.-.+..+++++...|.-+..+-.|.||.++.|.+.. ...+|++++|--
T Consensus 2 ivl~i~egr~F~~~-------~~~~~vv~a~~ng~~l~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~ 74 (340)
T PF12416_consen 2 IVLSILEGRNFPQR-------PRHPIVVEAKFNGESLETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAV 74 (340)
T ss_pred EEEEEecccCCCCC-------CCccEEEEEEeCCceeeecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEe
Confidence 57899999999752 235677888999999999999999999999999999842 356899999998
Q ss_pred CCCCcCCCCCCCCceeEEEEEEcccc---cCC--ceEeeEEEeeeeccCCcccccEEEEEEEEecCC
Q 042999 693 WRMFADASEERPDYRIGKIRIRVSTL---ENN--KVYTTSYPLLVLLRTGLKKMGEIELAVRFVCPS 754 (1006)
Q Consensus 693 ~~~~~~~~~~~~d~~lG~~~i~l~~l---~~~--~~~~~~~~L~~~~~~g~~~~G~l~l~~~~~~~~ 754 (1006)
|... ...+.||.+.++|... ..+ ....+||+|...+.+-.+..=+|.+.+......
T Consensus 75 ~~~~------~~re~iGyv~LdLRsa~~~~~~~~~~~~~W~~LL~~~~~y~~~KPEl~l~l~ie~~~ 135 (340)
T PF12416_consen 75 DGST------GKRESIGYVVLDLRSAVVPQEKNQKQKPKWYKLLSSSSKYKKHKPELLLSLSIEDDS 135 (340)
T ss_pred cCCC------CcceeccEEEEEccccccccccccccCCCeeEccccccccccCCccEEEEEEEeccc
Confidence 8332 2678999999999998 555 455799999886332222236788877776554
No 251
>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]
Probab=96.59 E-value=0.0014 Score=70.48 Aligned_cols=129 Identities=13% Similarity=0.214 Sum_probs=95.0
Q ss_pred cccEEEEEEEEecCCCCCCCCCCCCcEEEEEEC-----CeEEEeeCcCCCCCCeeeeEEEEEeeCCCCC--------CCc
Q 042999 14 TVRKLVVEVVDARDLLPKDGQGSSSPYVIADFD-----GQRKRTSTKFRDLNPVWNEPLEFIVSDPKNM--------DCE 80 (1006)
Q Consensus 14 ~~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~-----~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~--------~~~ 80 (1006)
....|.+.|+++.+++...+.-..|-|+++.+- .++.+|.+++.|.+|.|+|.|.+.+...... ...
T Consensus 365 ~d~elel~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~ 444 (523)
T KOG3837|consen 365 KDQELELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRL 444 (523)
T ss_pred chhHhHHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhc
Confidence 345677888888888655433345789998883 3567899999999999999999998762211 134
Q ss_pred eEEEEEEeCCCCCCCCCCCCceeEEEEEeCeeeeeeCCceeEEEEceecCCceeeeEEEEEEEEEEecC
Q 042999 81 ELEIEVYNDKRYCNGSGRKNHFLGRVKLCGSQFARRGDEGLVYFPLEKKSVFSWIRGEIGLRIYYYDEL 149 (1006)
Q Consensus 81 ~L~i~V~d~d~~~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~~~ 149 (1006)
.+.|++|+..-+. .+|.++|.+.+.+..+ ...-.....++|.+.. ..+.|.+.+++..-...
T Consensus 445 g~kfeifhkggf~----rSdkl~gt~nikle~L-en~cei~e~~~l~DGR--K~vGGkLevKvRiR~Pi 506 (523)
T KOG3837|consen 445 GKKFEIFHKGGFN----RSDKLTGTGNIKLEIL-ENMCEICEYLPLKDGR--KAVGGKLEVKVRIRQPI 506 (523)
T ss_pred CeeEEEeeccccc----cccceeceeeeeehhh-hcccchhhceeccccc--cccCCeeEEEEEEeccc
Confidence 6899999988774 6899999999998874 4444444678887654 24578998888876554
No 252
>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.30 E-value=0.0024 Score=68.34 Aligned_cols=108 Identities=24% Similarity=0.380 Sum_probs=84.7
Q ss_pred cccEEEEEEEEecCCCCCCCC-CCCCcEEEEEECC-----eEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEE
Q 042999 14 TVRKLVVEVVDARDLLPKDGQ-GSSSPYVIADFDG-----QRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVY 87 (1006)
Q Consensus 14 ~~~~L~V~v~~a~~L~~~~~~-g~~dPyv~v~~~~-----~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~ 87 (1006)
..+.|.|.|++|++|..+... ..++|||+|++.. .+.+|+...+|+.|.+-+...|.-..+ ...|.+.||
T Consensus 267 ~~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~sp~----~k~Lq~tv~ 342 (405)
T KOG2060|consen 267 SKGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQSPP----GKYLQGTVW 342 (405)
T ss_pred ccCceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhccCCC----ccEEEEEEe
Confidence 457899999999999887643 3689999999942 357899999999999998888887665 568999999
Q ss_pred e-CCCCCCCCCCCCceeEEEEEeCeeeeeeCCceeEEEEceecC
Q 042999 88 N-DKRYCNGSGRKNHFLGRVKLCGSQFARRGDEGLVYFPLEKKS 130 (1006)
Q Consensus 88 d-~d~~~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~ 130 (1006)
. +.+. ..+.|+|.+.+-++++--.......||+|...+
T Consensus 343 gdygRm-----d~k~fmg~aqi~l~eL~ls~~~~igwyKlfgss 381 (405)
T KOG2060|consen 343 GDYGRM-----DHKSFMGVAQIMLDELNLSSSPVIGWYKLFGSS 381 (405)
T ss_pred cccccc-----chHHHhhHHHHHhhhhccccccceeeeeccCCc
Confidence 5 4556 577899999999998632233556799998654
No 253
>PF15627 CEP76-C2: CEP76 C2 domain
Probab=96.03 E-value=0.068 Score=51.46 Aligned_cols=131 Identities=18% Similarity=0.162 Sum_probs=92.3
Q ss_pred cccEEEEEEEEecCCCCCCC--CCCCCc--EEEEEECCeEEEeeCcCCCCCCeeeeEEEEEeeCCCC----------CCC
Q 042999 14 TVRKLVVEVVDARDLLPKDG--QGSSSP--YVIADFDGQRKRTSTKFRDLNPVWNEPLEFIVSDPKN----------MDC 79 (1006)
Q Consensus 14 ~~~~L~V~v~~a~~L~~~~~--~g~~dP--yv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~----------~~~ 79 (1006)
...-|+++|..++-...--. .+..+. ++-+.+++|+++|+.+..+.+|.|+|.|.|.+..... ...
T Consensus 7 ~~~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~~QRF~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~~ 86 (156)
T PF15627_consen 7 GRRYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFRGQRFRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLLSIS 86 (156)
T ss_pred CceEEEEEEeCchhHhhhhhccCCCCceEEEEEEEecCceEecCCcccccCCCCCCcEEEEecccccccccchhHhhcCC
Confidence 45678999999886543211 133333 4455567999999999999999999999999876420 124
Q ss_pred ceEEEEEEeCCCCCCCCCCCCceeEEEEEeCeeeeeeCCce-eEEEEceecCCce-eeeEEEEEEEEEEecC
Q 042999 80 EELEIEVYNDKRYCNGSGRKNHFLGRVKLCGSQFARRGDEG-LVYFPLEKKSVFS-WIRGEIGLRIYYYDEL 149 (1006)
Q Consensus 80 ~~L~i~V~d~d~~~~~~~~~d~~lG~~~v~l~~l~~~~~~~-~~w~~L~~~~~~~-~~~G~i~l~~~~~~~~ 149 (1006)
+.|++.|---|.. +...++|...++...++..+... ..-+.|...+..+ -..|-+.++++..+..
T Consensus 87 ~pihivli~~d~~-----~~~~Lv~s~~ldWR~vL~s~~~~~~~~vEL~G~~~e~kv~~GiL~l~lELlP~~ 153 (156)
T PF15627_consen 87 DPIHIVLIRTDPS-----GETTLVGSHFLDWRKVLCSGNGSTSFTVELCGVGPESKVPVGILDLRLELLPNL 153 (156)
T ss_pred CceEEEEEEecCC-----CceEeeeeceehHHHHhccCCCccceeEEEeccCCCCccceeEEEEEEEeecCC
Confidence 6788888877776 56689999999999987666432 2234454443332 2579999999988765
No 254
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=95.67 E-value=0.047 Score=64.58 Aligned_cols=95 Identities=22% Similarity=0.243 Sum_probs=73.1
Q ss_pred EEEEEEEEeecCcccCCCCCCCCCCcEEEEEECC-------ccceeeeeecCCCCCCceecce-eeee-eccCCCCcEEE
Q 042999 456 YLRVTVMEAQDLCIAHNLPPLTAPEIRVKAQLAL-------QSARTRRGSMNNHSSSFHWHED-VFFV-AAEPFEDSLIL 526 (1006)
Q Consensus 456 ~L~V~v~~a~~L~~~~~~d~~~~~dpyv~v~lg~-------~~~kT~~~~~~~~t~nP~w~e~-~~f~-v~~~~~~~L~v 526 (1006)
.+.|+||+|+=|-.+ +...||.|.+-| ..+||+++. .++.||+|+|+ |.|. |.-|....|+|
T Consensus 704 t~sV~VISgqFLSdr-------kvgtyVEVdmfgLP~Dt~Rk~~rtrt~~--~n~~npvy~eepfvF~KVvLpeLA~lRi 774 (1189)
T KOG1265|consen 704 TLSVTVISGQFLSDR-------KVGTYVEVDMFGLPTDTIRKEFRTRTVQ--GNSFNPVYEEEPFVFRKVVLPELASLRI 774 (1189)
T ss_pred eEEEEEEeeeecccc-------ccCceEEEEecCCCchhhhhhhhhcccc--CCCCCcccccCCcccceecccchhheee
Confidence 499999999988643 455899999832 456777754 68899999995 7775 55566778999
Q ss_pred EEEECCCCccccceeEEEEEeccccccccccCcccceEEeCcCCC
Q 042999 527 LVEDRTAKDAAAVILGHAVVPVSSIDQRIDERHVASKWFPLEGSC 571 (1006)
Q Consensus 527 ~V~D~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L~~~~ 571 (1006)
.||+.. ..+||+-.+++..|.. +.+.+.|....
T Consensus 775 avyeEg-----gK~ig~RIlpvd~l~~-------GYrhv~LRse~ 807 (1189)
T KOG1265|consen 775 AVYEEG-----GKFIGQRILPVDGLNA-------GYRHVCLRSES 807 (1189)
T ss_pred eeeccC-----CceeeeeccchhcccC-------cceeEEecCCC
Confidence 999986 5699999999998864 34567777654
No 255
>PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins. It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO).
Probab=95.60 E-value=0.047 Score=52.56 Aligned_cols=50 Identities=22% Similarity=0.276 Sum_probs=43.2
Q ss_pred hHhhHHHHHHHHHHHHHHHHHHHHhhccccccCcchhhHHHHHHHHHhhc
Q 042999 822 MRKSKANWFRIVAVLAWAIGLAKWLHNIRRWKNPVTTVLVHVLYLVLVWY 871 (1006)
Q Consensus 822 ~~~~~~n~~rl~~~l~~~~~~~~~~~~~~~W~~p~~t~~~~~~~~~~~~~ 871 (1006)
..+++.=..|++..+..+-..+..++.+++|+.|..|.++.++.++++.-
T Consensus 61 ydrlr~va~rvQ~vlgd~At~gERl~allsWrdP~aT~lf~~~clv~avv 110 (156)
T PF08372_consen 61 YDRLRSVAGRVQNVLGDVATQGERLQALLSWRDPRATALFVVFCLVAAVV 110 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccHHHHHHHHHHHHHHH
Confidence 34677777889999999999999999999999999999998887777655
No 256
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=95.30 E-value=0.073 Score=63.01 Aligned_cols=108 Identities=27% Similarity=0.366 Sum_probs=78.6
Q ss_pred CCCCCCCCCCcccEEEEEEEEecCCCCCCCCCCCCcEEEEEECC-------eEEEeeCcC-CCCCCeeee-EEEEEeeCC
Q 042999 4 PSQPPPQQQFTVRKLVVEVVDARDLLPKDGQGSSSPYVIADFDG-------QRKRTSTKF-RDLNPVWNE-PLEFIVSDP 74 (1006)
Q Consensus 4 p~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~-------~~~kT~~~~-~t~nP~wne-~f~f~~~~~ 74 (1006)
|+...+-+.-..+.+.|+|+++.=|..++ ..-||.|.+-+ ..++|+++. ++.||+|+| .|.|.---.
T Consensus 691 PFse~~VdgvIA~t~sV~VISgqFLSdrk----vgtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvL 766 (1189)
T KOG1265|consen 691 PFSESPVDGVIAATLSVTVISGQFLSDRK----VGTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVL 766 (1189)
T ss_pred CcccCcccceEEeeEEEEEEeeeeccccc----cCceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecc
Confidence 67777777777889999999999997665 34799998832 347888875 788999994 677762221
Q ss_pred CCCCCceEEEEEEeCCCCCCCCCCCCceeEEEEEeCeeeeeeCCceeEEEEceecC
Q 042999 75 KNMDCEELEIEVYNDKRYCNGSGRKNHFLGRVKLCGSQFARRGDEGLVYFPLEKKS 130 (1006)
Q Consensus 75 ~~~~~~~L~i~V~d~d~~~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~ 130 (1006)
.+ -..|+|.||+. +.+|||+-.++++.+ ..| .+.+.|...+
T Consensus 767 pe--LA~lRiavyeE---------ggK~ig~RIlpvd~l-~~G---Yrhv~LRse~ 807 (1189)
T KOG1265|consen 767 PE--LASLRIAVYEE---------GGKFIGQRILPVDGL-NAG---YRHVCLRSES 807 (1189)
T ss_pred cc--hhheeeeeecc---------CCceeeeeccchhcc-cCc---ceeEEecCCC
Confidence 11 35799999985 346999999999885 333 3456666544
No 257
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=94.79 E-value=0.2 Score=49.07 Aligned_cols=92 Identities=18% Similarity=0.173 Sum_probs=62.1
Q ss_pred cEEEEEEEEecCCCCCCCCCCCCcEEEEEE--CCeE----EEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEeC
Q 042999 16 RKLVVEVVDARDLLPKDGQGSSSPYVIADF--DGQR----KRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYND 89 (1006)
Q Consensus 16 ~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~--~~~~----~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~ 89 (1006)
..++|+|+++.++.-. ..+|-||.+.+ +++. ..|+.+.. .++.|||.+.|++.-.....+..|.|.||+.
T Consensus 8 ~~~~v~i~~~~~~~~~---~~~~l~V~v~l~~g~~~L~~pv~T~~v~~-~~~~WnEwL~fpI~i~dLPr~ArL~iti~~~ 83 (158)
T cd08398 8 SNLRIKILCATYVNVN---DIDKIYVRTGIYHGGEPLCDNVNTQRVPC-SNPRWNEWLDYDIYIPDLPRSARLCLSICSV 83 (158)
T ss_pred CCeEEEEEeeccCCCC---CcCeEEEEEEEEECCEEccCeeEecccCC-CCCccceeEEcccchhcCChhheEEEEEEEE
Confidence 4688999999998653 34688888866 4433 34554443 6899999999987664444477899999997
Q ss_pred CCCCCCCCCCCceeEEEEEeCee
Q 042999 90 KRYCNGSGRKNHFLGRVKLCGSQ 112 (1006)
Q Consensus 90 d~~~~~~~~~d~~lG~~~v~l~~ 112 (1006)
.... +.+.....+|.+.++|=+
T Consensus 84 ~~~~-~~k~~~~~iG~~ni~LFd 105 (158)
T cd08398 84 KGRK-GAKEEHCPLAWGNINLFD 105 (158)
T ss_pred eccc-CCCCceEEEEEEEEEEEC
Confidence 5420 000122468888877655
No 258
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=94.78 E-value=0.15 Score=49.87 Aligned_cols=84 Identities=17% Similarity=0.194 Sum_probs=58.7
Q ss_pred EEEEEEEeecCcccCCCCCCCCCCcEEEEEE--CCccc----eeeeeecCCCCCCceecceeeeeec---cCCCCcEEEE
Q 042999 457 LRVTVMEAQDLCIAHNLPPLTAPEIRVKAQL--ALQSA----RTRRGSMNNHSSSFHWHEDVFFVAA---EPFEDSLILL 527 (1006)
Q Consensus 457 L~V~v~~a~~L~~~~~~d~~~~~dpyv~v~l--g~~~~----kT~~~~~~~~t~nP~w~e~~~f~v~---~~~~~~L~v~ 527 (1006)
++|.|+.+.++... ..+|.||++.+ |++.. .|+.+ ...++.|||-+.|.+. -|.+..|.|.
T Consensus 10 ~~v~i~~~~~~~~~------~~~~l~V~v~l~~g~~~L~~pv~T~~v----~~~~~~WnEwL~fpI~i~dLPr~ArL~it 79 (158)
T cd08398 10 LRIKILCATYVNVN------DIDKIYVRTGIYHGGEPLCDNVNTQRV----PCSNPRWNEWLDYDIYIPDLPRSARLCLS 79 (158)
T ss_pred eEEEEEeeccCCCC------CcCeEEEEEEEEECCEEccCeeEeccc----CCCCCccceeEEcccchhcCChhheEEEE
Confidence 89999999998753 34688988866 65443 23322 2368999999888763 3345689999
Q ss_pred EEECCCCc---cccceeEEEEEeccc
Q 042999 528 VEDRTAKD---AAAVILGHAVVPVSS 550 (1006)
Q Consensus 528 V~D~~~~~---~~d~~lG~~~i~l~~ 550 (1006)
||+..... .....+|.+.++|=+
T Consensus 80 i~~~~~~~~~k~~~~~iG~~ni~LFd 105 (158)
T cd08398 80 ICSVKGRKGAKEEHCPLAWGNINLFD 105 (158)
T ss_pred EEEEecccCCCCceEEEEEEEEEEEC
Confidence 99976321 023579999988765
No 259
>PF15627 CEP76-C2: CEP76 C2 domain
Probab=94.66 E-value=0.29 Score=47.24 Aligned_cols=131 Identities=15% Similarity=0.158 Sum_probs=83.3
Q ss_pred CCceEEEEEEEEEeecCcccCCCC-CCCCCC--cEEEEEECCccceeeeeecCCCCCCceecceeeeeeccCC-------
Q 042999 451 SPKLWYLRVTVMEAQDLCIAHNLP-PLTAPE--IRVKAQLALQSARTRRGSMNNHSSSFHWHEDVFFVAAEPF------- 520 (1006)
Q Consensus 451 ~p~~~~L~V~v~~a~~L~~~~~~d-~~~~~d--pyv~v~lg~~~~kT~~~~~~~~t~nP~w~e~~~f~v~~~~------- 520 (1006)
.|.-.+|.+.|..|+-..-. ++ ..+..+ .++-+.+++|.++|+.+. .+.+|.|+|.|.|.+....
T Consensus 5 ~~~~~yL~l~vlgGkAFld~--l~~~~~~~~s~~~l~l~f~~QRF~S~~Vp---~~~eP~f~e~Flf~l~~~~~~~~~~~ 79 (156)
T PF15627_consen 5 DPGRRYLHLRVLGGKAFLDH--LQEPEGQVCSTFTLHLHFRGQRFRSKPVP---CACEPDFNEEFLFELPRDSFGAGSTA 79 (156)
T ss_pred CCCceEEEEEEeCchhHhhh--hhccCCCCceEEEEEEEecCceEecCCcc---cccCCCCCCcEEEEecccccccccch
Confidence 44556799999999766522 11 112333 345556689999999876 8999999999999876553
Q ss_pred ------CCcEEEEEEECCCCccccceeEEEEEeccccccccccCcccceEEeCcCCCCCCCccceeeeEEEEEeeeC
Q 042999 521 ------EDSLILLVEDRTAKDAAAVILGHAVVPVSSIDQRIDERHVASKWFPLEGSCGRGCARSYCGRIQLKLCLEG 591 (1006)
Q Consensus 521 ------~~~L~v~V~D~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L~~~~~~~~~~~~~G~l~l~v~l~~ 591 (1006)
.+.+.+.|.-.|... ...++|...++...+....... + ..-+.|.+... ...-..|-|.+++.+.+
T Consensus 80 ~~lls~~~pihivli~~d~~~-~~~Lv~s~~ldWR~vL~s~~~~-~-~~~vEL~G~~~--e~kv~~GiL~l~lELlP 151 (156)
T PF15627_consen 80 TTLLSISDPIHIVLIRTDPSG-ETTLVGSHFLDWRKVLCSGNGS-T-SFTVELCGVGP--ESKVPVGILDLRLELLP 151 (156)
T ss_pred hHhhcCCCceEEEEEEecCCC-ceEeeeeceehHHHHhccCCCc-c-ceeEEEeccCC--CCccceeEEEEEEEeec
Confidence 236777777665432 3589999999998887643211 0 11233443322 11234688888876654
No 260
>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=94.54 E-value=0.064 Score=56.02 Aligned_cols=119 Identities=19% Similarity=0.234 Sum_probs=78.2
Q ss_pred CCcEEEEEEEeeccCCccCccCCCCCCCCCeEEEEEECC-EEEEeecccCCCCCeeccEEEEEEeCCCcEEEEEEEECCC
Q 042999 616 PPVGILELGILGARGLLPMKTKNGGKGSTDAYCVAKYGK-KWVRTRTITDCFDPRWNEQYTWQVYDPCTVLTVGVFDNWR 694 (1006)
Q Consensus 616 ~~~g~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~~-~~~rT~~~~~~~nP~wne~~~~~v~~~~~~l~i~v~d~~~ 694 (1006)
...|.|.++++.++||.-... .- +-..+-|||+.++. ...||.+-.....-.|.|.|.+++... .++.+-||.|+.
T Consensus 48 s~tGiL~~H~~~GRGLr~~p~-~k-glt~~~ycVle~drqh~aRt~vrs~~~~f~w~e~F~~Dvv~~-~vl~~lvySW~p 124 (442)
T KOG1452|consen 48 SSTGILYFHAYNGRGLRMTPQ-QK-GLTVCFYCVLEPDRQHPARTRVRSSGPGFAWAEDFKHDVVNI-EVLHYLVYSWPP 124 (442)
T ss_pred cccceEEEEEecccccccChh-cc-CceeeeeeeeeecccCccccccccCCCCccchhhceeecccc-eeeeEEEeecCc
Confidence 357999999999999954321 12 34678999999974 456777766666778999999988654 468888999875
Q ss_pred CCcCCCCCCCCc--eeEEEEEEcccccCCceEeeEEEeeeeccCCcccccEEEEEEEEecC
Q 042999 695 MFADASEERPDY--RIGKIRIRVSTLENNKVYTTSYPLLVLLRTGLKKMGEIELAVRFVCP 753 (1006)
Q Consensus 695 ~~~~~~~~~~d~--~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~l~l~~~~~~~ 753 (1006)
-. .+. .+| .|.+..+.+..+ .+.+.|.- ...|++.+++.|...
T Consensus 125 q~-------RHKLC~~g--~l~~~~v~rqsp-d~~~Al~l------ePrgq~~~r~~~~Dp 169 (442)
T KOG1452|consen 125 QR-------RHKLCHLG--LLEAFVVDRQSP-DRVVALYL------EPRGQPPLRLPLADP 169 (442)
T ss_pred hh-------hccccccc--hhhhhhhhhcCC-cceeeeec------ccCCCCceecccCCh
Confidence 32 232 244 233333332221 33444432 245999999999843
No 261
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=94.27 E-value=0.29 Score=48.84 Aligned_cols=74 Identities=23% Similarity=0.310 Sum_probs=53.1
Q ss_pred cEEEEEEEEecCCCCCCCCCCCCcEEEEEE--CCeE----EEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEeC
Q 042999 16 RKLVVEVVDARDLLPKDGQGSSSPYVIADF--DGQR----KRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYND 89 (1006)
Q Consensus 16 ~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~--~~~~----~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~ 89 (1006)
..++|+|+.+.+|.-+ ....+-||.+.+ |++. ..|+.+.-..++.|||.+.|++.-........|.|.||+.
T Consensus 8 ~~f~i~i~~~~~~~~~--~~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~ 85 (173)
T cd08693 8 EKFSITLHKISNLNAA--ERTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAIYEV 85 (173)
T ss_pred CCEEEEEEEeccCccC--CCCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEEEEe
Confidence 4688999999999752 234666777655 4433 4666665567799999999987664434477899999997
Q ss_pred CC
Q 042999 90 KR 91 (1006)
Q Consensus 90 d~ 91 (1006)
..
T Consensus 86 ~~ 87 (173)
T cd08693 86 SK 87 (173)
T ss_pred cc
Confidence 54
No 262
>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=94.16 E-value=0.073 Score=55.60 Aligned_cols=119 Identities=19% Similarity=0.135 Sum_probs=78.3
Q ss_pred cccEEEEEEEEecCCCCCC--CCCCCCcEEEEEECC-eEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEeCC
Q 042999 14 TVRKLVVEVVDARDLLPKD--GQGSSSPYVIADFDG-QRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYNDK 90 (1006)
Q Consensus 14 ~~~~L~V~v~~a~~L~~~~--~~g~~dPyv~v~~~~-~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~d 90 (1006)
..|.|.+++.++++|.-.. .+-+.+-||++.++. ++.+|.+......-.|.|+|..++... ..+.+-||.|+
T Consensus 49 ~tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~drqh~aRt~vrs~~~~f~w~e~F~~Dvv~~-----~vl~~lvySW~ 123 (442)
T KOG1452|consen 49 STGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEPDRQHPARTRVRSSGPGFAWAEDFKHDVVNI-----EVLHYLVYSWP 123 (442)
T ss_pred ccceEEEEEecccccccChhccCceeeeeeeeeecccCccccccccCCCCccchhhceeecccc-----eeeeEEEeecC
Confidence 4678999999999996533 245678999999985 457777776777778999999988763 47889999887
Q ss_pred CCCCCCCCCCceeEEEEEeCeeeeeeCCceeEEEEceecCCceeeeEEEEEEEEEEecC
Q 042999 91 RYCNGSGRKNHFLGRVKLCGSQFARRGDEGLVYFPLEKKSVFSWIRGEIGLRIYYYDEL 149 (1006)
Q Consensus 91 ~~~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~~~ 149 (1006)
.- .++++.-..-+.+..+...... .-+.|.- ..+|++-+++.+.+..
T Consensus 124 pq-----~RHKLC~~g~l~~~~v~rqspd--~~~Al~l-----ePrgq~~~r~~~~Dp~ 170 (442)
T KOG1452|consen 124 PQ-----RRHKLCHLGLLEAFVVDRQSPD--RVVALYL-----EPRGQPPLRLPLADPE 170 (442)
T ss_pred ch-----hhccccccchhhhhhhhhcCCc--ceeeeec-----ccCCCCceecccCChH
Confidence 65 3444322223333333222222 2233332 1278888888776653
No 263
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=93.23 E-value=0.36 Score=47.41 Aligned_cols=73 Identities=22% Similarity=0.199 Sum_probs=54.7
Q ss_pred CCCCcEEEEEE--CCeE----EEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEeCCCCCCCCCCCCceeEEEEE
Q 042999 35 GSSSPYVIADF--DGQR----KRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYNDKRYCNGSGRKNHFLGRVKL 108 (1006)
Q Consensus 35 g~~dPyv~v~~--~~~~----~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~d~~~~~~~~~d~~lG~~~v 108 (1006)
..+|-||.+.+ +++. ..|+.+.-+..+.|||...|++.-.....+..|.|.|||.+.. +....+|.+.+
T Consensus 28 ~~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~-----~~~~~vg~~~~ 102 (159)
T cd08397 28 PNSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGT-----GKAVPFGGTTL 102 (159)
T ss_pred CCCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCC-----CCceEEEEEEE
Confidence 45788888876 4433 4666666667789999999998775444577899999998765 45678999888
Q ss_pred eCee
Q 042999 109 CGSQ 112 (1006)
Q Consensus 109 ~l~~ 112 (1006)
+|=+
T Consensus 103 ~lFd 106 (159)
T cd08397 103 SLFN 106 (159)
T ss_pred eeEC
Confidence 8665
No 264
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=93.12 E-value=0.42 Score=47.75 Aligned_cols=86 Identities=19% Similarity=0.164 Sum_probs=57.8
Q ss_pred EEEEEEEeecCcccCCCCCCCCCCcEEEEEE--CCccc----eeeeeecCCCCCCceecceeeeeec---cCCCCcEEEE
Q 042999 457 LRVTVMEAQDLCIAHNLPPLTAPEIRVKAQL--ALQSA----RTRRGSMNNHSSSFHWHEDVFFVAA---EPFEDSLILL 527 (1006)
Q Consensus 457 L~V~v~~a~~L~~~~~~d~~~~~dpyv~v~l--g~~~~----kT~~~~~~~~t~nP~w~e~~~f~v~---~~~~~~L~v~ 527 (1006)
++|+|+.+.+|... ....+.||++.+ |++.. .|+... -..++.|||.+.|.+. -|.+..|.|.
T Consensus 10 f~i~i~~~~~~~~~-----~~~~~l~V~~~lyhG~~~L~~p~~T~~~~---~~~~~~Wnewl~F~I~i~dLPr~ArLcit 81 (173)
T cd08693 10 FSITLHKISNLNAA-----ERTMKVGVQAGLFHGGESLCKTVKTSEVS---GKNDPVWNETLEFDINVCDLPRMARLCFA 81 (173)
T ss_pred EEEEEEEeccCccC-----CCCceEEEEEEEEECCEEccCceEccccC---CCCccccceeEEcccchhcCChhHeEEEE
Confidence 89999999999852 235678888755 66443 343322 3467999999888753 3445689999
Q ss_pred EEECCCCc---------------cccceeEEEEEeccc
Q 042999 528 VEDRTAKD---------------AAAVILGHAVVPVSS 550 (1006)
Q Consensus 528 V~D~~~~~---------------~~d~~lG~~~i~l~~ 550 (1006)
||+..... ..+..||.+.++|=+
T Consensus 82 i~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd 119 (173)
T cd08693 82 IYEVSKKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFD 119 (173)
T ss_pred EEEecccccccccccccccccccCcceEEEEEeEEEEc
Confidence 99865311 013578877777654
No 265
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=92.79 E-value=1.9 Score=41.52 Aligned_cols=114 Identities=18% Similarity=0.177 Sum_probs=77.2
Q ss_pred EEEEEEeeccCCccCccCCCCCCCCCeEEEEEECCEE---EEeecc-cCCCCCeeccEEEEEEeC---C------CcEEE
Q 042999 620 ILELGILGARGLLPMKTKNGGKGSTDAYCVAKYGKKW---VRTRTI-TDCFDPRWNEQYTWQVYD---P------CTVLT 686 (1006)
Q Consensus 620 ~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~~~~---~rT~~~-~~~~nP~wne~~~~~v~~---~------~~~l~ 686 (1006)
.+.+.|++..++|.. ..--||....|+.. ..|... ..+..-.||+.|.+.+.- . ...+.
T Consensus 8 ~~~l~i~~l~~~p~~--------~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~ 79 (143)
T PF10358_consen 8 QFDLTIHELENLPSS--------NGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELK 79 (143)
T ss_pred EEEEEEEEeECcCCC--------CCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEE
Confidence 567888888888651 23456666666553 444433 346678999999888742 1 12688
Q ss_pred EEEEECCCCCcCCCCCCCCceeEEEEEEcccccCC--ceEeeEEEeeeeccCCcccccEEEEEEEEec
Q 042999 687 VGVFDNWRMFADASEERPDYRIGKIRIRVSTLENN--KVYTTSYPLLVLLRTGLKKMGEIELAVRFVC 752 (1006)
Q Consensus 687 i~v~d~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~--~~~~~~~~L~~~~~~g~~~~G~l~l~~~~~~ 752 (1006)
|.|+....-+ +...||++.|.|.++.+. ......++|... ......|++.+.+..
T Consensus 80 ~~v~~~~~~~-------~k~~lG~~~inLaey~~~~~~~~~~~~~l~~~----~~~~a~L~isi~~~~ 136 (143)
T PF10358_consen 80 FSVFEVDGSG-------KKKVLGKVSINLAEYANEDEEPITVRLLLKKC----KKSNATLSISISLSE 136 (143)
T ss_pred EEEEEecCCC-------ccceEEEEEEEHHHhhCcCCCcEEEEEeCccC----CCCCcEEEEEEEEEE
Confidence 9999875322 236999999999999873 556778888653 123478888888764
No 266
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=92.59 E-value=0.67 Score=45.58 Aligned_cols=91 Identities=19% Similarity=0.150 Sum_probs=61.3
Q ss_pred cEEEEEEEEecCCCCCCCCCCCCcEEEEEE--CCeE----EEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEeC
Q 042999 16 RKLVVEVVDARDLLPKDGQGSSSPYVIADF--DGQR----KRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYND 89 (1006)
Q Consensus 16 ~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~--~~~~----~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~ 89 (1006)
..++|++....++...+ ....+-||.+.+ +++. ..|.......++.|||.+.|++.-........|.|.||+.
T Consensus 8 ~~~~i~i~~~~~~~~~~-~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~ 86 (156)
T cd08380 8 FNLRIKIHGITNINLLD-SEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYAV 86 (156)
T ss_pred CCeEEEEEeeccccccC-CCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEEE
Confidence 45778888888775411 234566777755 4432 3444444447899999999987654333467899999997
Q ss_pred CCCCCCCCC--CCceeEEEEEeCee
Q 042999 90 KRYCNGSGR--KNHFLGRVKLCGSQ 112 (1006)
Q Consensus 90 d~~~~~~~~--~d~~lG~~~v~l~~ 112 (1006)
+.. + .+..||.+.++|=+
T Consensus 87 ~~~-----~~~~~~~iG~~~~~lFd 106 (156)
T cd08380 87 SEP-----GSKKEVPLGWVNVPLFD 106 (156)
T ss_pred ecC-----CCCcceEEEEEeEEeEc
Confidence 755 2 45789998888665
No 267
>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]
Probab=91.74 E-value=0.11 Score=62.59 Aligned_cols=105 Identities=15% Similarity=0.106 Sum_probs=84.2
Q ss_pred CCCCeEEEEEECCEE-EEeecccCC-CCCeeccEEEEEEeCCCcEEEEEEEECCCCCcCCCCCCCCceeEEEEEEccccc
Q 042999 642 GSTDAYCVAKYGKKW-VRTRTITDC-FDPRWNEQYTWQVYDPCTVLTVGVFDNWRMFADASEERPDYRIGKIRIRVSTLE 719 (1006)
Q Consensus 642 g~sdpyv~v~~~~~~-~rT~~~~~~-~nP~wne~~~~~v~~~~~~l~i~v~d~~~~~~~~~~~~~d~~lG~~~i~l~~l~ 719 (1006)
..+++|+.+.+.... .+|..+.+. .+|.|.+.|.....+....+++.+-+.+..| ....+|.+.++...+.
T Consensus 136 ~~~e~Ylt~~l~~~~~~~t~~~~~f~e~s~~~f~~~~~~~h~~g~v~~~~~~~~~~G-------~s~~w~~v~~s~~~~~ 208 (887)
T KOG1329|consen 136 KTLENYLTVVLHKARYRRTHVIYEFLENSRWSFSFDIGFAHKAGYVIFRVKGARVPG-------WSKRWGRVKISFLQYC 208 (887)
T ss_pred hhccchheeeechhhhhchhhhhcccccchhhhhccccccccccEEEEeecCCcccc-------ceeEEEEeccchhhhh
Confidence 347999999997654 488888887 5999999999999999999999999988765 5779999999999999
Q ss_pred CCceEeeEEEeeeeccCCcccccEEEEEEEEecC
Q 042999 720 NNKVYTTSYPLLVLLRTGLKKMGEIELAVRFVCP 753 (1006)
Q Consensus 720 ~~~~~~~~~~L~~~~~~g~~~~G~l~l~~~~~~~ 753 (1006)
.+.....|+++.+.+.+..++.-.+.+.+.|.+.
T Consensus 209 ~~~~~~~~~~Il~~d~~~~~~~~~~~~~~~~~~~ 242 (887)
T KOG1329|consen 209 SGHRIGGWFPILDNDGKPHQKGSNESLRLGFTPM 242 (887)
T ss_pred ccccccceeeeeccCCccccCCcccceEEeeEee
Confidence 9887889999988665443343445566666654
No 268
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=91.68 E-value=0.73 Score=45.27 Aligned_cols=70 Identities=14% Similarity=0.119 Sum_probs=51.5
Q ss_pred CCCCCeEEEEEE--CCEEE----EeecccCCCCCeeccEEEEEEeC----CCcEEEEEEEECCCCCcCCCCCCCCceeEE
Q 042999 641 KGSTDAYCVAKY--GKKWV----RTRTITDCFDPRWNEQYTWQVYD----PCTVLTVGVFDNWRMFADASEERPDYRIGK 710 (1006)
Q Consensus 641 ~g~sdpyv~v~~--~~~~~----rT~~~~~~~nP~wne~~~~~v~~----~~~~l~i~v~d~~~~~~~~~~~~~d~~lG~ 710 (1006)
...+|-||.+.+ |++.+ +|+.+.-+..+.|||-..|++.- ..+.|.|+|||.+..+ +...||.
T Consensus 27 ~~~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~-------~~~~vg~ 99 (159)
T cd08397 27 SPNSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTG-------KAVPFGG 99 (159)
T ss_pred CCCCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCCC-------CceEEEE
Confidence 345788887764 66543 66666656778999999998752 3568999999986533 5678999
Q ss_pred EEEEccc
Q 042999 711 IRIRVST 717 (1006)
Q Consensus 711 ~~i~l~~ 717 (1006)
+.++|=+
T Consensus 100 ~~~~lFd 106 (159)
T cd08397 100 TTLSLFN 106 (159)
T ss_pred EEEeeEC
Confidence 9998754
No 269
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=91.58 E-value=3.5 Score=39.75 Aligned_cols=124 Identities=16% Similarity=0.204 Sum_probs=80.9
Q ss_pred cccEEEEEEEEecCCCCCCCCCCCCcEEEEEECCeE---EEeeCcC-CCCCCeeeeEEEEEeeCCC-----CCCCceEEE
Q 042999 14 TVRKLVVEVVDARDLLPKDGQGSSSPYVIADFDGQR---KRTSTKF-RDLNPVWNEPLEFIVSDPK-----NMDCEELEI 84 (1006)
Q Consensus 14 ~~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~~~---~kT~~~~-~t~nP~wne~f~f~~~~~~-----~~~~~~L~i 84 (1006)
....+.|+|.+..+++. ....-||+...+... .+|.... .+..-.|||.|.+.++-.. ......+.|
T Consensus 5 ~kf~~~l~i~~l~~~p~----~~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~ 80 (143)
T PF10358_consen 5 VKFQFDLTIHELENLPS----SNGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKF 80 (143)
T ss_pred eeEEEEEEEEEeECcCC----CCCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEE
Confidence 45678899999999875 223445555555432 4444443 4455789999998865422 123567889
Q ss_pred EEEeCCCCCCCCCCCCceeEEEEEeCeeeeeeC-CceeEEEEceecCCceeeeEEEEEEEEEEecC
Q 042999 85 EVYNDKRYCNGSGRKNHFLGRVKLCGSQFARRG-DEGLVYFPLEKKSVFSWIRGEIGLRIYYYDEL 149 (1006)
Q Consensus 85 ~V~d~d~~~~~~~~~d~~lG~~~v~l~~l~~~~-~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~~~ 149 (1006)
.|+..... ++...+|.+.++|.+++... .....-++|.... .....|.+++.+....
T Consensus 81 ~v~~~~~~-----~~k~~lG~~~inLaey~~~~~~~~~~~~~l~~~~---~~~a~L~isi~~~~~~ 138 (143)
T PF10358_consen 81 SVFEVDGS-----GKKKVLGKVSINLAEYANEDEEPITVRLLLKKCK---KSNATLSISISLSELR 138 (143)
T ss_pred EEEEecCC-----CccceEEEEEEEHHHhhCcCCCcEEEEEeCccCC---CCCcEEEEEEEEEECc
Confidence 99987533 23369999999999986653 4444567776542 2356777887777665
No 270
>PF02453 Reticulon: Reticulon; InterPro: IPR003388 Eukaryotic proteins of the reticulon (RTN) family all share an association with the endoplasmic reticulum (ER). Whereas amino-terminal regions are not related to one another, all reticulon proteins share a 200 amino acid residue region of sequence similarity at the C-terminal. This region contains two large hydrophobic regions separated by a 66 residue hydrophilic segment. The conserved hydrophobic C-terminal portion has been shown to play an essential role in the association of reticulons with the ER membrane. The hydrophobic portions are supposed to be membrane-embedded and the hydrophilic 66 residue localized to the lumenal/extracellular face of the membrane. Most reticulons have a di-lysine ER retention motif at the C-terminal. Because of their likely association with the rough as well as the smooth ER, the reticulons might play some role in transport processes or in regulation of intracellular calcium levels. It has been suggested that the reticulons may be serving as ER-associated channel-like complexes [, , , ].; GO: 0005783 endoplasmic reticulum; PDB: 2KO2_A 2JV5_A 2G31_A.
Probab=91.44 E-value=0.028 Score=56.23 Aligned_cols=50 Identities=10% Similarity=-0.077 Sum_probs=18.3
Q ss_pred HHHHHhhHHhHhhhccccCchhHHHHHHHHHHHHHHhhhhhhHHHHHHHh
Q 042999 950 LGDFATQGERVQALVSWRDPRATKLFIGVCTVITLVLYVVPPKMVAVALG 999 (1006)
Q Consensus 950 l~~~a~~~e~i~~~~~w~~p~~t~~~~~~l~~~~~~l~~iP~r~i~l~~~ 999 (1006)
...++..+..++.++.|+||..|..++++|.+++.+..+++...++.+..
T Consensus 90 ~~~~n~~~~~~~~l~~~~~~~~~l~~~~~l~~l~~lg~~~s~~~L~~l~~ 139 (169)
T PF02453_consen 90 AEWINSVLSWLRRLVFGEDPKKSLKVFVVLYILSFLGSWFSFLTLLYLGV 139 (169)
T ss_dssp CCCCCHHHHHHHCCCHCT-TTGGG--------------------------
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 33455557788999999999999999999999999988888776665533
No 271
>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins. PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct
Probab=90.96 E-value=1.8 Score=37.36 Aligned_cols=85 Identities=19% Similarity=0.177 Sum_probs=57.8
Q ss_pred CCCCcEEEEEECC-eEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEeCCCCCCCCCCCCceeEEEEEeCeee
Q 042999 35 GSSSPYVIADFDG-QRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYNDKRYCNGSGRKNHFLGRVKLCGSQF 113 (1006)
Q Consensus 35 g~~dPyv~v~~~~-~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~d~~~~~~~~~d~~lG~~~v~l~~l 113 (1006)
|.++-.+.+.+++ ...+|.-.. -.+..|++.|.+.+.. ++.|+|.||-.|.- .+-|...+.|++.
T Consensus 7 ~~~eV~avLklDn~~VgqT~Wk~-~s~q~WDQ~Fti~LdR-----sRELEI~VywrD~R--------slCav~~lrLEd~ 72 (98)
T cd08687 7 GCSEVSAVLKLDNTVVGQTQWKP-KSNQAWDQSFTLELER-----SRELEIAVYWRDWR--------SLCAVKFLKLEDE 72 (98)
T ss_pred cccceEEEEEEcCeEEeeccccc-cccccccceeEEEeec-----ccEEEEEEEEecch--------hhhhheeeEhhhh
Confidence 3467788999986 446666653 3578899999999987 56899999987654 3556556666662
Q ss_pred eeeCCceeEEEEceecCCceeeeEEEEEEEEE
Q 042999 114 ARRGDEGLVYFPLEKKSVFSWIRGEIGLRIYY 145 (1006)
Q Consensus 114 ~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~ 145 (1006)
. ...-.+|.+ +|.+...+.|
T Consensus 73 ~-----~~~~~~lep-------qg~l~~ev~f 92 (98)
T cd08687 73 R-----HEVQLDMEP-------QLCLVAELTF 92 (98)
T ss_pred c-----ccceecccc-------ccEEEEEEEe
Confidence 1 112344443 6777777776
No 272
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=90.92 E-value=1.1 Score=43.95 Aligned_cols=91 Identities=21% Similarity=0.242 Sum_probs=58.1
Q ss_pred EEEEEEEeecCcccCCCCCCCCCCcEEEEEE--CCccc-eeeeeecCCCCCCceecceeeeeec---cCCCCcEEEEEEE
Q 042999 457 LRVTVMEAQDLCIAHNLPPLTAPEIRVKAQL--ALQSA-RTRRGSMNNHSSSFHWHEDVFFVAA---EPFEDSLILLVED 530 (1006)
Q Consensus 457 L~V~v~~a~~L~~~~~~d~~~~~dpyv~v~l--g~~~~-kT~~~~~~~~t~nP~w~e~~~f~v~---~~~~~~L~v~V~D 530 (1006)
++|.+....++... .....+.||++.+ |++.. ...+........++.|||-+.|.+. -|.+..|.|.||+
T Consensus 10 ~~i~i~~~~~~~~~----~~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~ 85 (156)
T cd08380 10 LRIKIHGITNINLL----DSEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYA 85 (156)
T ss_pred eEEEEEeecccccc----CCCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEE
Confidence 77888888887642 1335677887766 65422 1111111112368999999888753 3445689999999
Q ss_pred CCCCc-cccceeEEEEEecccc
Q 042999 531 RTAKD-AAAVILGHAVVPVSSI 551 (1006)
Q Consensus 531 ~~~~~-~~d~~lG~~~i~l~~l 551 (1006)
.+... .++..||.+.++|=+.
T Consensus 86 ~~~~~~~~~~~iG~~~~~lFd~ 107 (156)
T cd08380 86 VSEPGSKKEVPLGWVNVPLFDY 107 (156)
T ss_pred EecCCCCcceEEEEEeEEeEcc
Confidence 76432 0258999999988653
No 273
>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c
Probab=90.27 E-value=1.2 Score=44.45 Aligned_cols=99 Identities=20% Similarity=0.142 Sum_probs=63.8
Q ss_pred cccEEEEEEEEecCCCCCCCCCCCCcEEEEEE--CCeE----EEeeCcC----CCCCCeeeeEEEEEeeCCCCCCCceEE
Q 042999 14 TVRKLVVEVVDARDLLPKDGQGSSSPYVIADF--DGQR----KRTSTKF----RDLNPVWNEPLEFIVSDPKNMDCEELE 83 (1006)
Q Consensus 14 ~~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~--~~~~----~kT~~~~----~t~nP~wne~f~f~~~~~~~~~~~~L~ 83 (1006)
....+.|+|..+.+++........|-|+.+.+ +++. ..|+... -...+.|||.+.|.+.-........|.
T Consensus 6 v~~~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~ 85 (171)
T cd04012 6 VTDLLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLV 85 (171)
T ss_pred ccccEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEE
Confidence 44568899999999987654446788888866 4433 3444322 123577999999998654333467899
Q ss_pred EEEEeCCCCCCC----CCCCCceeEEEEEeCee
Q 042999 84 IEVYNDKRYCNG----SGRKNHFLGRVKLCGSQ 112 (1006)
Q Consensus 84 i~V~d~d~~~~~----~~~~d~~lG~~~v~l~~ 112 (1006)
|.+|+......+ .+..+..||.+.++|=+
T Consensus 86 itl~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd 118 (171)
T cd04012 86 LTLYGTTSSPDGGSNKQRMGPEELGWVSLPLFD 118 (171)
T ss_pred EEEEEEecCCccccccccccceEEEEEeEeeEc
Confidence 999997654000 00134577777776554
No 274
>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir
Probab=90.02 E-value=1.6 Score=43.51 Aligned_cols=69 Identities=20% Similarity=0.188 Sum_probs=44.3
Q ss_pred EEEEEEEeecCcccCCCCCCCCCCcEEEEEE--CCccc---eeeeeecCCCCCCceecceeeeeec---cCCCCcEEEEE
Q 042999 457 LRVTVMEAQDLCIAHNLPPLTAPEIRVKAQL--ALQSA---RTRRGSMNNHSSSFHWHEDVFFVAA---EPFEDSLILLV 528 (1006)
Q Consensus 457 L~V~v~~a~~L~~~~~~d~~~~~dpyv~v~l--g~~~~---kT~~~~~~~~t~nP~w~e~~~f~v~---~~~~~~L~v~V 528 (1006)
++|.|..+.++.. +.+.....||++.+ |++.. +|+.. .-+.++.|||-+.|.+. -|....|.|.|
T Consensus 12 friki~~~~~~~~----~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~---~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti 84 (178)
T cd08399 12 FRVKILGIDIPVL----PRNTDLTVFVEANIQHGQQVLCQRRTSPK---PFTEEVLWNTWLEFDIKIKDLPKGALLNLQI 84 (178)
T ss_pred EEEEEEeecccCc----CCCCceEEEEEEEEEECCeecccceeecc---CCCCCccccccEECccccccCChhhEEEEEE
Confidence 7888888764432 33334456777654 65443 33332 25667999998888753 33456899999
Q ss_pred EECC
Q 042999 529 EDRT 532 (1006)
Q Consensus 529 ~D~~ 532 (1006)
|+..
T Consensus 85 ~~~~ 88 (178)
T cd08399 85 YCGK 88 (178)
T ss_pred EEEe
Confidence 9964
No 275
>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir
Probab=89.91 E-value=1.9 Score=43.09 Aligned_cols=75 Identities=24% Similarity=0.260 Sum_probs=48.9
Q ss_pred cEEEEEEEEecCCCCCCCCCCCCcEEEEEE--CCeE---EEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEeCC
Q 042999 16 RKLVVEVVDARDLLPKDGQGSSSPYVIADF--DGQR---KRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYNDK 90 (1006)
Q Consensus 16 ~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~--~~~~---~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~d 90 (1006)
..++|+|..+.++. .+......-||++.+ +++. .+|+...-+.++.|||.+.|++.-.....+..|.|.||+..
T Consensus 10 ~~friki~~~~~~~-~~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~~ 88 (178)
T cd08399 10 RKFRVKILGIDIPV-LPRNTDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCGK 88 (178)
T ss_pred CCEEEEEEeecccC-cCCCCceEEEEEEEEEECCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEEEEe
Confidence 35778888887442 222222335555544 4332 35666666778999999999987654445789999999974
Q ss_pred C
Q 042999 91 R 91 (1006)
Q Consensus 91 ~ 91 (1006)
.
T Consensus 89 ~ 89 (178)
T cd08399 89 A 89 (178)
T ss_pred c
Confidence 3
No 276
>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins. PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct
Probab=89.43 E-value=3.3 Score=35.76 Aligned_cols=86 Identities=12% Similarity=0.161 Sum_probs=58.2
Q ss_pred CCCCCeEEEEEECCEEE-EeecccCCCCCeeccEEEEEEeCCCcEEEEEEEECCCCCcCCCCCCCCceeEEEEEEccccc
Q 042999 641 KGSTDAYCVAKYGKKWV-RTRTITDCFDPRWNEQYTWQVYDPCTVLTVGVFDNWRMFADASEERPDYRIGKIRIRVSTLE 719 (1006)
Q Consensus 641 ~g~sdpyv~v~~~~~~~-rT~~~~~~~nP~wne~~~~~v~~~~~~l~i~v~d~~~~~~~~~~~~~d~~lG~~~i~l~~l~ 719 (1006)
.|.++-.|+++++|+.+ +|.... ..+..|++.|.+.+ +-+..|+|.||=.|- -.+=|-..+.|.+..
T Consensus 6 ~~~~eV~avLklDn~~VgqT~Wk~-~s~q~WDQ~Fti~L-dRsRELEI~VywrD~----------RslCav~~lrLEd~~ 73 (98)
T cd08687 6 MGCSEVSAVLKLDNTVVGQTQWKP-KSNQAWDQSFTLEL-ERSRELEIAVYWRDW----------RSLCAVKFLKLEDER 73 (98)
T ss_pred ecccceEEEEEEcCeEEeeccccc-cccccccceeEEEe-ecccEEEEEEEEecc----------hhhhhheeeEhhhhc
Confidence 45678899999998655 665433 35788999999987 445679999997764 225555666776632
Q ss_pred CCceEeeEEEeeeeccCCcccccEEEEEEEE
Q 042999 720 NNKVYTTSYPLLVLLRTGLKKMGEIELAVRF 750 (1006)
Q Consensus 720 ~~~~~~~~~~L~~~~~~g~~~~G~l~l~~~~ 750 (1006)
. ....+| ...|.+..+++|
T Consensus 74 ~----~~~~~l--------epqg~l~~ev~f 92 (98)
T cd08687 74 H----EVQLDM--------EPQLCLVAELTF 92 (98)
T ss_pred c----cceecc--------ccccEEEEEEEe
Confidence 1 223333 244888888887
No 277
>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c
Probab=88.84 E-value=1.6 Score=43.63 Aligned_cols=93 Identities=18% Similarity=0.186 Sum_probs=60.5
Q ss_pred EEEEEEEEeecCcccCCCCCCCCCCcEEEEEE--CCccc----eeeeeec-CCCCCCceecceeeeeec---cCCCCcEE
Q 042999 456 YLRVTVMEAQDLCIAHNLPPLTAPEIRVKAQL--ALQSA----RTRRGSM-NNHSSSFHWHEDVFFVAA---EPFEDSLI 525 (1006)
Q Consensus 456 ~L~V~v~~a~~L~~~~~~d~~~~~dpyv~v~l--g~~~~----kT~~~~~-~~~t~nP~w~e~~~f~v~---~~~~~~L~ 525 (1006)
.++|+|..+.+++.. ......|-||++.+ |++.. .|+.... ..-...+.|||-+.|.+. -|.+..|.
T Consensus 9 ~~~i~v~~~h~~~~~---~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~ 85 (171)
T cd04012 9 LLSVTVSSLHRIPPT---WVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLV 85 (171)
T ss_pred cEEEEEEEeecCChH---HhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEE
Confidence 388999999999975 33345788888866 66443 3332110 111235779998888753 34456899
Q ss_pred EEEEECCCCc--------cccceeEEEEEecccc
Q 042999 526 LLVEDRTAKD--------AAAVILGHAVVPVSSI 551 (1006)
Q Consensus 526 v~V~D~~~~~--------~~d~~lG~~~i~l~~l 551 (1006)
|.+|+..... ..+..||.+.++|=+.
T Consensus 86 itl~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~ 119 (171)
T cd04012 86 LTLYGTTSSPDGGSNKQRMGPEELGWVSLPLFDF 119 (171)
T ss_pred EEEEEEecCCccccccccccceEEEEEeEeeEcc
Confidence 9999876321 0257889888887653
No 278
>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain. Outlier of C2 family.
Probab=87.07 E-value=3.7 Score=36.88 Aligned_cols=74 Identities=24% Similarity=0.193 Sum_probs=50.2
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEE--CCeE----EEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEeCCC
Q 042999 18 LVVEVVDARDLLPKDGQGSSSPYVIADF--DGQR----KRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYNDKR 91 (1006)
Q Consensus 18 L~V~v~~a~~L~~~~~~g~~dPyv~v~~--~~~~----~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~d~ 91 (1006)
+.+.+....+.........++-||.+.+ +++. ..|+.+.-...+.|||...|++.-.....+..|.|.+|+...
T Consensus 13 ~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~~ 92 (100)
T smart00142 13 LVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEVKN 92 (100)
T ss_pred eEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEEeeC
Confidence 5677777777655433223578888866 4433 456655556668999999998766444447789999998643
No 279
>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....
Probab=84.68 E-value=3.5 Score=39.77 Aligned_cols=57 Identities=25% Similarity=0.178 Sum_probs=40.1
Q ss_pred EeeCcCCC-CCCeeeeEEEEEeeCCCCCCCceEEEEEEeCCCCCCCCCCCC----ceeEEEEEeCee
Q 042999 51 RTSTKFRD-LNPVWNEPLEFIVSDPKNMDCEELEIEVYNDKRYCNGSGRKN----HFLGRVKLCGSQ 112 (1006)
Q Consensus 51 kT~~~~~t-~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~d~~~~~~~~~d----~~lG~~~v~l~~ 112 (1006)
.|+...-+ .++.|||.+.|++.-........|.|.||+.+.. ... ..||.+.+++=+
T Consensus 23 ~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~-----~~~~~~~~~lgw~n~~lFd 84 (142)
T PF00792_consen 23 STSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSK-----KKSKKKKVPLGWVNLPLFD 84 (142)
T ss_dssp E-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECS-----TTT--EEEEEEEEEEESB-
T ss_pred eccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCC-----CccccceeEEEEEEEEeEC
Confidence 56666555 7999999999997654333477899999998766 333 588888887665
No 280
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=84.18 E-value=15 Score=36.91 Aligned_cols=58 Identities=16% Similarity=0.209 Sum_probs=41.3
Q ss_pred EEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEeCCCCCCCCCCCCceeEEEEEeC
Q 042999 49 RKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYNDKRYCNGSGRKNHFLGRVKLCG 110 (1006)
Q Consensus 49 ~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~d~~~~~~~~~d~~lG~~~v~l 110 (1006)
.++|.+...+.+|.|+|++.+.+.... .....|.|..++..... ......+|-+-++|
T Consensus 54 e~~S~V~yH~~~P~W~EtiKi~lP~~~-~~~~HL~FtfrH~S~~~---k~~~~pfg~s~lpL 111 (189)
T cd08695 54 EYRSFVLYHNNSPRWNETIKLPIPIDK-FRGSHLRFEFRHCSTKD---KGEKKLFGFSFVPL 111 (189)
T ss_pred eEEEEEEEcCCCCCCceeEEEecChhh-CCCeeEEEEEEEeeecc---CCCCCceEEEEEee
Confidence 378899999999999999999987743 22678999888854330 01125677766665
No 281
>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....
Probab=79.13 E-value=19 Score=34.61 Aligned_cols=54 Identities=15% Similarity=0.212 Sum_probs=39.3
Q ss_pred EeecccCC-CCCeeccEEEEEEe--C--CCcEEEEEEEECCCCCcCCCCCCCC----ceeEEEEEEcccc
Q 042999 658 RTRTITDC-FDPRWNEQYTWQVY--D--PCTVLTVGVFDNWRMFADASEERPD----YRIGKIRIRVSTL 718 (1006)
Q Consensus 658 rT~~~~~~-~nP~wne~~~~~v~--~--~~~~l~i~v~d~~~~~~~~~~~~~d----~~lG~~~i~l~~l 718 (1006)
.|+...-+ .++.|||.+.|++. + ..+.|.|+||+.+... .. ..||.+.++|=+.
T Consensus 23 ~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~-------~~~~~~~~lgw~n~~lFd~ 85 (142)
T PF00792_consen 23 STSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKK-------KSKKKKVPLGWVNLPLFDY 85 (142)
T ss_dssp E-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECST-------TT--EEEEEEEEEEESB-T
T ss_pred eccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCC-------ccccceeEEEEEEEEeECC
Confidence 56656555 79999999999875 2 4568999999976543 23 6999999998665
No 282
>PF08151 FerI: FerI (NUC094) domain; InterPro: IPR012968 The ferlin gene family are characterised by multiple tandem C2 domains and a C-terminal transmembrane domain. They are found in a wide range of species and their function remains unknown, however, mutations in its two most well-characterised members, dysferlin and otoferlin, have been implicated in human disease []. This domain is present in proteins of the Ferlin family, which includes Otoferlin, Myoferlin and Dysferlin. It is often located between two C2 domains [].
Probab=78.68 E-value=4.3 Score=33.78 Aligned_cols=51 Identities=24% Similarity=0.346 Sum_probs=37.9
Q ss_pred EeCCcCCCCCCCCCCCcceeEEcccCCCCCCcceeeEEEEEEEeecCCCCcCcc
Q 042999 379 FDLSDVPVRDPPDSPLAPQWYRLEGEASDQNNRVSGDIQLAVWIGTQADEAFPE 432 (1006)
Q Consensus 379 i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~~~g~l~~~~~~~~~~d~~~~~ 432 (1006)
+|++.++.. ++|.+.++|..|.++..... ..+|.|.+++.+-.+.|+....
T Consensus 1 ~DlgtVY~q--P~H~~~~KW~~L~dP~D~~~-G~kGYlKv~i~Vlg~GD~~~~~ 51 (72)
T PF08151_consen 1 LDLGTVYNQ--PDHQFYRKWALLTDPDDTSA-GVKGYLKVDISVLGPGDEPPVE 51 (72)
T ss_pred CceeeeecC--CCCeeEeceEEecCCCCCcc-CCceEEEEEEEEEcCCCcCCCC
Confidence 356666765 78999999999999875333 3789999888877777765443
No 283
>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain. Outlier of C2 family.
Probab=78.51 E-value=8.2 Score=34.63 Aligned_cols=70 Identities=19% Similarity=0.175 Sum_probs=44.1
Q ss_pred EEEEEEEeecCcccCCCCCCCCCCcEEEEEE--CCccc----eeeeeecCCCCCCceecceeeeeec---cCCCCcEEEE
Q 042999 457 LRVTVMEAQDLCIAHNLPPLTAPEIRVKAQL--ALQSA----RTRRGSMNNHSSSFHWHEDVFFVAA---EPFEDSLILL 527 (1006)
Q Consensus 457 L~V~v~~a~~L~~~~~~d~~~~~dpyv~v~l--g~~~~----kT~~~~~~~~t~nP~w~e~~~f~v~---~~~~~~L~v~ 527 (1006)
+.+.+....+.... .....++.||++.+ |++.. .|+.+ .-...+.|||-+.|++. -|.+..|.|.
T Consensus 13 ~~~~~~~~~~~~l~---~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~---~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~ 86 (100)
T smart00142 13 LVITIALIHGIPLN---WSRDYSDLYVEIQLYHGGKLLCLPVSTSYK---PFFPSVKWNEWLTFPIQISDLPREARLCIT 86 (100)
T ss_pred eEEEEEEeeCCCcc---cccCcceEEEEEEEEECCEEccCcEEeccc---CCCCCcccceeEEccCchhcCChhhEEEEE
Confidence 55666666676643 12222588988866 66543 33322 23456899999888753 3445689999
Q ss_pred EEECC
Q 042999 528 VEDRT 532 (1006)
Q Consensus 528 V~D~~ 532 (1006)
+|+..
T Consensus 87 i~~~~ 91 (100)
T smart00142 87 IYEVK 91 (100)
T ss_pred EEEee
Confidence 99865
No 284
>PF06398 Pex24p: Integral peroxisomal membrane peroxin; InterPro: IPR010482 Peroxisomes play diverse roles in the cell, compartmentalising many activities related to lipid metabolism and functioning in the decomposition of toxic hydrogen peroxide. Sequence similarity was identified between two hypothetical proteins and the peroxin integral membrane protein Pex24p [].
Probab=75.71 E-value=6.4 Score=44.62 Aligned_cols=44 Identities=25% Similarity=0.481 Sum_probs=30.8
Q ss_pred HHHHHHHHHhhH---HhHhhhccccCchhHHHHHHHHHHHHHHhhhh
Q 042999 946 VQTVLGDFATQG---ERVQALVSWRDPRATKLFIGVCTVITLVLYVV 989 (1006)
Q Consensus 946 vQ~~l~~~a~~~---e~i~~~~~w~~p~~t~~~~~~l~~~~~~l~~i 989 (1006)
+-..|+.+-.++ +++..+++|++|..|..++++++.+++..++.
T Consensus 15 l~~~l~~~f~~~~~~d~vl~il~W~~p~~t~~~L~l~t~~~l~p~l~ 61 (359)
T PF06398_consen 15 LSSRLGPIFPFQLILDRVLRILTWTNPDYTLSFLLLYTFLCLNPYLL 61 (359)
T ss_pred HHHHHHHhhHHHHHHHHHHHeEEeCCCCcchHHHHHHHHHHHHHHHH
Confidence 334445555555 88899999999998887777666666655553
No 285
>cd05137 RasGAP_CLA2_BUD2 CLA2/BUD2 functions as a GTPase-activating protein (GAP) for BUD1/RSR1 and is necessary for proper bud-site selection in yeast. BUD2 has sequence similarity to the catalytic domain of RasGAPs, and stimulates the hydrolysis of BUD1-GTP to BUD1-GDP. Elimination of Bud2p activity by mutation causes a random budding pattern with no growth defect. Overproduction of Bud2p also alters the budding pattern.
Probab=72.83 E-value=5.8 Score=45.07 Aligned_cols=48 Identities=21% Similarity=0.230 Sum_probs=37.3
Q ss_pred eeEEEEEEccc-ccCCceEeeEEEeeeeccCCcccccEEEEEEEEecCCCC
Q 042999 707 RIGKIRIRVST-LENNKVYTTSYPLLVLLRTGLKKMGEIELAVRFVCPSML 756 (1006)
Q Consensus 707 ~lG~~~i~l~~-l~~~~~~~~~~~L~~~~~~g~~~~G~l~l~~~~~~~~~~ 756 (1006)
.+|.+.|++.. +.++...+.|||+.+....+.. .|.| ++++|....++
T Consensus 1 ~~G~v~i~~~~~~~~~~~~e~w~~i~~~~~~~~~-~~~l-lk~~~~~~~VL 49 (395)
T cd05137 1 LVGRIDITLEMILDRGLDKETWLPIFDVDNKSVG-EGLI-IKVSSEENFVL 49 (395)
T ss_pred CeeEEEeehhhhccCCCCceeeeccccCCCCCcC-cceE-EEEEeeeceec
Confidence 48999999999 6677777899999886554433 3888 89999876555
No 286
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A.
Probab=71.33 E-value=14 Score=37.33 Aligned_cols=60 Identities=15% Similarity=0.108 Sum_probs=33.8
Q ss_pred EEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEeCCCCCCCCCCCCceeEEEEEeCee
Q 042999 50 KRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYNDKRYCNGSGRKNHFLGRVKLCGSQ 112 (1006)
Q Consensus 50 ~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~d~~~~~~~~~d~~lG~~~v~l~~ 112 (1006)
+.|.+..++.+|.|+|+|.+.+...... ...|.|.+++...-.. ..+...+|.+.++|-+
T Consensus 61 ~~S~v~yh~k~P~f~deiKi~LP~~l~~-~~HLlFtf~h~s~~~~--~~~~~~~g~a~lpL~~ 120 (184)
T PF14429_consen 61 YYSSVYYHNKNPQFNDEIKIQLPPDLFP-KHHLLFTFYHVSCKES--KEKSKPFGYAFLPLMD 120 (184)
T ss_dssp EE----TT-SS-EEEEEEEEEE-CCCCT-TEEEEEEEEE---SSS--S-SS-EEEEEEEESB-
T ss_pred EEEEEEecCCCCCccEEEEEEcCchhcc-cEEEEEEEEeeccccc--cCccceeEEEEEEeee
Confidence 6788888899999999999998774332 6789999999654410 0112577777766554
No 287
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=70.99 E-value=26 Score=35.44 Aligned_cols=59 Identities=8% Similarity=0.075 Sum_probs=41.4
Q ss_pred EEEEeecccCCCCCeeccEEEEEEeC---CCcEEEEEEEECCCCCcCCCCCCCCceeEEEEEEcc
Q 042999 655 KWVRTRTITDCFDPRWNEQYTWQVYD---PCTVLTVGVFDNWRMFADASEERPDYRIGKIRIRVS 716 (1006)
Q Consensus 655 ~~~rT~~~~~~~nP~wne~~~~~v~~---~~~~l~i~v~d~~~~~~~~~~~~~d~~lG~~~i~l~ 716 (1006)
..++|.+...+.+|.|+|++.+.+.. ....|.++++...... +.. +....+|-+-+||-
T Consensus 53 se~~S~V~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~~~--~kd-~~e~pfg~s~lpL~ 114 (196)
T cd08694 53 DEYKSVIYYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSSNE--AKD-KSEKPFALSFVKLM 114 (196)
T ss_pred eeEEEEEEeecCCCCCceeEEEecChhhCCCeEEEEEEEeecccc--ccC-CCCCceEEEEEeee
Confidence 46788888899999999999887753 5568999998754321 000 02356888888875
No 288
>PTZ00447 apical membrane antigen 1-like protein; Provisional
Probab=70.91 E-value=29 Score=37.49 Aligned_cols=114 Identities=13% Similarity=0.171 Sum_probs=75.6
Q ss_pred eEEEEEEEEEeecCcccCCCCCCCCCCcEEEEEECCccceeeeeecCCCCCCceecceeeeeeccCCCCcEEEEEEECCC
Q 042999 454 LWYLRVTVMEAQDLCIAHNLPPLTAPEIRVKAQLALQSARTRRGSMNNHSSSFHWHEDVFFVAAEPFEDSLILLVEDRTA 533 (1006)
Q Consensus 454 ~~~L~V~v~~a~~L~~~~~~d~~~~~dpyv~v~lg~~~~kT~~~~~~~~t~nP~w~e~~~f~v~~~~~~~L~v~V~D~~~ 533 (1006)
..+|-|.|.+-.++. .....|+.+..|....+|..+.+-+++. -.-.+.....+. -.+..|++.|+-..-
T Consensus 57 kF~LLVeI~EI~~i~--------k~khiyIef~~Gr~d~TT~~IpTsKK~R-I~IqqRV~IkIR-QcDnTLkI~lfKKkL 126 (508)
T PTZ00447 57 TFYLLVKINEIFNIN--------KYKHIYIIFSTDKYDFTTDEIPTNKKNR-IHIDQRVDIKIR-QCDETLRVDLFTTKL 126 (508)
T ss_pred eeeEEEEehhhhccc--------cceeEEEEEEcCceEEEccccccCcCce-EEEeeeeeeeee-ecCceEEEEEEeccc
Confidence 456888888876664 3467899999999888886654221111 133444444444 345579999988765
Q ss_pred CccccceeEEEEEeccc-cccccccCcccceEEeCcCCCCCCCccceeeeEEEEEe
Q 042999 534 KDAAAVILGHAVVPVSS-IDQRIDERHVASKWFPLEGSCGRGCARSYCGRIQLKLC 588 (1006)
Q Consensus 534 ~~~~d~~lG~~~i~l~~-l~~~~~~~~~~~~w~~L~~~~~~~~~~~~~G~l~l~v~ 588 (1006)
.+ ..-||...+++.. +. +...+..+||.+... +...+++.|+.+
T Consensus 127 vk--k~hIgdI~InIn~dII---dk~FPKnkWy~c~kD------Gq~~cRIqLSFh 171 (508)
T PTZ00447 127 TK--KVHIGQIKIDINASVI---SKSFPKNEWFVCFKD------GQEICKVQMSFY 171 (508)
T ss_pred cc--eeEEEEEEecccHHHH---hccCCccceEEEecC------CceeeeEEEEeh
Confidence 55 7899999999865 33 223567889999653 344678777764
No 289
>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain
Probab=70.76 E-value=23 Score=35.13 Aligned_cols=69 Identities=19% Similarity=0.251 Sum_probs=51.7
Q ss_pred CCCeEEEEEECCEEE-Eeeccc--CCCCCeeccEEEEEEeCCCcEEEEEEEECCCCCcCCCCCCCCceeEEEEEEccccc
Q 042999 643 STDAYCVAKYGKKWV-RTRTIT--DCFDPRWNEQYTWQVYDPCTVLTVGVFDNWRMFADASEERPDYRIGKIRIRVSTLE 719 (1006)
Q Consensus 643 ~sdpyv~v~~~~~~~-rT~~~~--~~~nP~wne~~~~~v~~~~~~l~i~v~d~~~~~~~~~~~~~d~~lG~~~i~l~~l~ 719 (1006)
+..-|++|.++++.+ +|+... ....-.+|+.|.+.+..--..|.|+||..... .+.+|+.+.||+-...
T Consensus 36 ~~~~~ikl~~N~k~V~~T~~~~l~~dF~v~f~~~f~v~i~~~Pesi~l~i~E~~~~--------~~~~la~v~vpvP~~~ 107 (168)
T PF15625_consen 36 KTRYYIKLFFNDKEVSRTRSRPLWSDFRVHFNEIFNVQITRWPESIKLEIYEKSGL--------SDRLLAEVFVPVPGST 107 (168)
T ss_pred heeEEEEEEECCEEEEeeeeEecCCCeEEeccCEEEEEEecCCCEEEEEEEEccCc--------cceEEEEEEeeCCCCc
Confidence 345789999987765 554332 34445678999999988667799999998763 6889999999986544
No 290
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=70.24 E-value=27 Score=35.32 Aligned_cols=42 Identities=10% Similarity=0.233 Sum_probs=33.7
Q ss_pred EEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEeCCC
Q 042999 49 RKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYNDKR 91 (1006)
Q Consensus 49 ~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~d~ 91 (1006)
.++|.+...+.+|.|+|++.+.+.... .....|.|.+++...
T Consensus 54 e~~S~V~Yh~~~P~W~EtIKl~lP~~~-~~~~HL~FtfrH~S~ 95 (196)
T cd08694 54 EYKSVIYYQVDKPKWFETFKVAIPIED-FKSSHLRFTFKHRSS 95 (196)
T ss_pred eEEEEEEeecCCCCCceeEEEecChhh-CCCeEEEEEEEeecc
Confidence 478888889999999999999987643 236789999988643
No 291
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A.
Probab=69.17 E-value=19 Score=36.46 Aligned_cols=59 Identities=10% Similarity=0.050 Sum_probs=34.8
Q ss_pred EEEEeecccCCCCCeeccEEEEEEeC---CCcEEEEEEEECCCCCcCCCCCCCCceeEEEEEEccc
Q 042999 655 KWVRTRTITDCFDPRWNEQYTWQVYD---PCTVLTVGVFDNWRMFADASEERPDYRIGKIRIRVST 717 (1006)
Q Consensus 655 ~~~rT~~~~~~~nP~wne~~~~~v~~---~~~~l~i~v~d~~~~~~~~~~~~~d~~lG~~~i~l~~ 717 (1006)
..+.|.+..++.+|.|+|+|.+.+.. +...|.|++++-..-.+.. ++..+|.+.+||.+
T Consensus 59 ~~~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~~~----~~~~~g~a~lpL~~ 120 (184)
T PF14429_consen 59 TSYYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKESKE----KSKPFGYAFLPLMD 120 (184)
T ss_dssp S-EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSSS-----SS-EEEEEEEESB-
T ss_pred eEEEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeeccccccC----ccceeEEEEEEeee
Confidence 35678888889999999999888764 4458999999965432110 12799999999987
No 292
>PF11696 DUF3292: Protein of unknown function (DUF3292); InterPro: IPR021709 This eukaryotic family of proteins has no known function.
Probab=68.29 E-value=12 Score=44.46 Aligned_cols=66 Identities=30% Similarity=0.442 Sum_probs=47.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhHHhHhhhccccCchhHHHHHHHHHHHHHHhhhhhhHHHHHHHhh
Q 042999 929 PEIIRMRYDRLRMLAARVQTVLGDFATQGERVQALVSWRDPRATKLFIGVCTVITLVLYVVPPKMVAVALGF 1000 (1006)
Q Consensus 929 ~~~~~~~~~~l~~~~~~vQ~~l~~~a~~~e~i~~~~~w~~p~~t~~~~~~l~~~~~~l~~iP~r~i~l~~~~ 1000 (1006)
++.|+..++++-. .++=-++.+.-.|.-|-+|++|+.|..||++-+++.++=+++|.-+++|+..+
T Consensus 90 pdkLRa~lERlY~------tv~v~~~~~~khi~RLrSW~eprRT~~fc~vYf~aW~~dll~p~~~~~L~~li 155 (642)
T PF11696_consen 90 PDKLRANLERLYM------TVVVGLAAFIKHIARLRSWREPRRTAAFCAVYFIAWLLDLLVPAFFAFLIALI 155 (642)
T ss_pred hHHHHHHhHhhee------ehHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556666666554 22333444556777888999999999999988888888888898777766443
No 293
>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function. It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.
Probab=66.46 E-value=29 Score=31.56 Aligned_cols=93 Identities=15% Similarity=0.213 Sum_probs=48.4
Q ss_pred EEEEEECC-EEEEeecccCCCCCeeccEEEEEEeCC--------CcEEEEEEEECCCCCcCCCCCCCCceeEEEEEEccc
Q 042999 647 YCVAKYGK-KWVRTRTITDCFDPRWNEQYTWQVYDP--------CTVLTVGVFDNWRMFADASEERPDYRIGKIRIRVST 717 (1006)
Q Consensus 647 yv~v~~~~-~~~rT~~~~~~~nP~wne~~~~~v~~~--------~~~l~i~v~d~~~~~~~~~~~~~d~~lG~~~i~l~~ 717 (1006)
||.+.+-. +..-|.++ ...+|.+|-+-.+.|... ...+.|+++..-. .....||.+.|++.+
T Consensus 2 Fct~dFydfEtq~Tpvv-~G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~g--------~d~~tla~~~i~l~~ 72 (107)
T PF11618_consen 2 FCTYDFYDFETQTTPVV-RGLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQALG--------SDFETLAAGQISLRP 72 (107)
T ss_dssp EEEE-STT---EE---E-ESSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE-S--------S-EEEEEEEEE--SH
T ss_pred EEEEEeeceeeecccce-eCCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeecc--------CCeEEEEEEEeechh
Confidence 56666543 44445554 488999998888887532 3579999988542 157899999999999
Q ss_pred ccCCc--eEeeEEEeeeeccCCcccccEEEEEEEEe
Q 042999 718 LENNK--VYTTSYPLLVLLRTGLKKMGEIELAVRFV 751 (1006)
Q Consensus 718 l~~~~--~~~~~~~L~~~~~~g~~~~G~l~l~~~~~ 751 (1006)
+.... .......|.+.. | +..|.|+..++..
T Consensus 73 ll~~~~~~i~~~~~l~g~~--~-~~~g~l~y~~rl~ 105 (107)
T PF11618_consen 73 LLESNGERIHGSATLVGVS--G-EDFGTLEYWIRLR 105 (107)
T ss_dssp HHH--S--EEEEEEE-BSS--S--TSEEEEEEEEEE
T ss_pred hhcCCCceEEEEEEEeccC--C-CeEEEEEEEEEec
Confidence 86322 334455554432 2 2459999888765
No 294
>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain
Probab=64.57 E-value=44 Score=33.18 Aligned_cols=72 Identities=17% Similarity=0.221 Sum_probs=52.7
Q ss_pred CCCcEEEEEECC-ccceeeeeecCCCCCCceecceeeeeeccCCCCcEEEEEEECCCCccccceeEEEEEecccccc
Q 042999 478 APEIRVKAQLAL-QSARTRRGSMNNHSSSFHWHEDVFFVAAEPFEDSLILLVEDRTAKDAAAVILGHAVVPVSSIDQ 553 (1006)
Q Consensus 478 ~~dpyv~v~lg~-~~~kT~~~~~~~~t~nP~w~e~~~f~v~~~~~~~L~v~V~D~~~~~~~d~~lG~~~i~l~~l~~ 553 (1006)
....|+++.+++ ++.+|+.... ...-.-.|+|.|.+.+.. .-+.|.+.||-..... +..|+++.+++-....
T Consensus 36 ~~~~~ikl~~N~k~V~~T~~~~l-~~dF~v~f~~~f~v~i~~-~Pesi~l~i~E~~~~~--~~~la~v~vpvP~~~~ 108 (168)
T PF15625_consen 36 KTRYYIKLFFNDKEVSRTRSRPL-WSDFRVHFNEIFNVQITR-WPESIKLEIYEKSGLS--DRLLAEVFVPVPGSTV 108 (168)
T ss_pred heeEEEEEEECCEEEEeeeeEec-CCCeEEeccCEEEEEEec-CCCEEEEEEEEccCcc--ceEEEEEEeeCCCCcc
Confidence 456799999977 5666665432 234456678888887764 4568999999988755 8999999999866543
No 295
>PTZ00447 apical membrane antigen 1-like protein; Provisional
Probab=62.96 E-value=90 Score=33.92 Aligned_cols=109 Identities=14% Similarity=0.148 Sum_probs=74.2
Q ss_pred EEEEEEeeccCCccCccCCCCCCCCCeEEEEEECCEEEEeecccCCCCCe--eccEEEEEEeCCCcEEEEEEEECCCCCc
Q 042999 620 ILELGILGARGLLPMKTKNGGKGSTDAYCVAKYGKKWVRTRTITDCFDPR--WNEQYTWQVYDPCTVLTVGVFDNWRMFA 697 (1006)
Q Consensus 620 ~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~~~~~rT~~~~~~~nP~--wne~~~~~v~~~~~~l~i~v~d~~~~~~ 697 (1006)
.|-|.|.+-.++ +-+..-|+.+..|...++|..+.-+..-. -.+.....+..-...|+|.+|-..-.
T Consensus 59 ~LLVeI~EI~~i---------~k~khiyIef~~Gr~d~TT~~IpTsKK~RI~IqqRV~IkIRQcDnTLkI~lfKKkLv-- 127 (508)
T PTZ00447 59 YLLVKINEIFNI---------NKYKHIYIIFSTDKYDFTTDEIPTNKKNRIHIDQRVDIKIRQCDETLRVDLFTTKLT-- 127 (508)
T ss_pred eEEEEehhhhcc---------ccceeEEEEEEcCceEEEccccccCcCceEEEeeeeeeeeeecCceEEEEEEecccc--
Confidence 466778777766 33457899999999999997665443322 23555666666778999999987654
Q ss_pred CCCCCCCCceeEEEEEEccc-cc-CCceEeeEEEeeeeccCCcccccEEEEEEE
Q 042999 698 DASEERPDYRIGKIRIRVST-LE-NNKVYTTSYPLLVLLRTGLKKMGEIELAVR 749 (1006)
Q Consensus 698 ~~~~~~~d~~lG~~~i~l~~-l~-~~~~~~~~~~L~~~~~~g~~~~G~l~l~~~ 749 (1006)
+..-||.+.|.+.. +. ..-+-+.||.+.. .|. ..+.|.|++.
T Consensus 128 ------kk~hIgdI~InIn~dIIdk~FPKnkWy~c~k---DGq-~~cRIqLSFh 171 (508)
T PTZ00447 128 ------KKVHIGQIKIDINASVISKSFPKNEWFVCFK---DGQ-EICKVQMSFY 171 (508)
T ss_pred ------ceeEEEEEEecccHHHHhccCCccceEEEec---CCc-eeeeEEEEeh
Confidence 47799999999874 22 2234578999942 232 2367777653
No 296
>PF06219 DUF1005: Protein of unknown function (DUF1005); InterPro: IPR010410 This is a family of plant proteins with undetermined function.
Probab=62.94 E-value=84 Score=35.35 Aligned_cols=109 Identities=14% Similarity=0.113 Sum_probs=64.2
Q ss_pred CCCeEEEEEECCEEEEeecccC----CCC-Ceec-cEEEEEEe--------CC------CcEEEEEEEECCCCCcCCCCC
Q 042999 643 STDAYCVAKYGKKWVRTRTITD----CFD-PRWN-EQYTWQVY--------DP------CTVLTVGVFDNWRMFADASEE 702 (1006)
Q Consensus 643 ~sdpyv~v~~~~~~~rT~~~~~----~~n-P~wn-e~~~~~v~--------~~------~~~l~i~v~d~~~~~~~~~~~ 702 (1006)
.+..||+|++.+--.+|..+.= +.+ |.-+ -.-.|++. .+ ...|+|.||--..-. .=+.+
T Consensus 35 sspCfC~IrL~~fP~Qta~vPLi~~~~~~~p~~~~~Aa~F~Ld~s~l~~l~~~~~f~~~~~~L~i~VY~Gr~G~-tCGv~ 113 (460)
T PF06219_consen 35 SSPCFCEIRLKGFPSQTAPVPLISSSEPEPPDSHSLAASFHLDKSDLRRLLAKPCFYSPRPCLEISVYTGRRGS-TCGVG 113 (460)
T ss_pred CCCeEEEEecCCCCccceeeeeccCCCCCCCCcCCcceEEecCHHHHHHHhCCCccccCCceEEEEEEECCCCC-ccccc
Confidence 4688999999988877776531 112 1211 12233331 11 247999999854311 00011
Q ss_pred CCCceeEEEEEEcccccC--C---ceEeeEEEeeeeccCC-cccccEEEEEEEEecC
Q 042999 703 RPDYRIGKIRIRVSTLEN--N---KVYTTSYPLLVLLRTG-LKKMGEIELAVRFVCP 753 (1006)
Q Consensus 703 ~~d~~lG~~~i~l~~l~~--~---~~~~~~~~L~~~~~~g-~~~~G~l~l~~~~~~~ 753 (1006)
.+-.+||+++|+|. +.. + ..+..|..+......+ .....+|||.++-.++
T Consensus 114 ~~~klLG~v~vpld-l~~ae~kp~v~hnGWi~iGk~~~~~~~~~~aeLHl~Vr~EpD 169 (460)
T PF06219_consen 114 NSGKLLGKVRVPLD-LKWAEGKPVVFHNGWISIGKNKQGSGKSPSAELHLVVRAEPD 169 (460)
T ss_pred ccceEEEEEEEEec-cccccCCeeEEEccceecCCCCCCCCCCCcceEEEEEeccCC
Confidence 35679999999997 322 2 2356788885543322 2235899998887765
No 297
>KOG3385 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=60.68 E-value=24 Score=31.93 Aligned_cols=18 Identities=17% Similarity=0.300 Sum_probs=13.3
Q ss_pred ChhhHHHHHHHHHHHHHH
Q 042999 928 PPEIIRMRYDRLRMLAAR 945 (1006)
Q Consensus 928 ~~~~~~~~~~~l~~~~~~ 945 (1006)
..+.++.++.+|+.+...
T Consensus 37 ~~e~L~~kV~aLKsLs~d 54 (118)
T KOG3385|consen 37 AAESLQQKVKALKSLSLD 54 (118)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 456788888888886554
No 298
>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=56.22 E-value=3.2 Score=49.06 Aligned_cols=98 Identities=16% Similarity=0.068 Sum_probs=65.7
Q ss_pred CCCCcEEEEEECC-eEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEeCCCCCCCCCCCCceeEEEEEeCeee
Q 042999 35 GSSSPYVIADFDG-QRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYNDKRYCNGSGRKNHFLGRVKLCGSQF 113 (1006)
Q Consensus 35 g~~dPyv~v~~~~-~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~d~~~~~~~~~d~~lG~~~v~l~~l 113 (1006)
...+||+.+.+.- +...+.+...+..|.|+++|...+.. ...+.|.|+..... ..+.+...+++..+++
T Consensus 26 ~al~~y~~v~vk~~~~~~~~~~~~~~~~~~~~~F~~~v~~-----~~~~~i~v~~~~~~-----~~~~~~a~~~~~~e~~ 95 (694)
T KOG0694|consen 26 QALQPYLAVELKVKQGAENMTKVELRIPELRETFHVEVVA-----GGAKNIIVLLKSPD-----PKALSEAQLSLQEESQ 95 (694)
T ss_pred hhhhhhheeccceeecccccCCCCCCCchhhhheeeeeec-----CCceEEEEEecCCc-----chhhHHHhHHHHHHHH
Confidence 3568999999874 33566667889999999999999776 45788999887544 3444455555544443
Q ss_pred eeeCCceeEEEEceecCCceeeeEEEEEEEEEEecC
Q 042999 114 ARRGDEGLVYFPLEKKSVFSWIRGEIGLRIYYYDEL 149 (1006)
Q Consensus 114 ~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~~~ 149 (1006)
.........|..++. .|++...+.+....
T Consensus 96 k~~~~~~~~w~~~~~-------~g~~~~~~~~~~~~ 124 (694)
T KOG0694|consen 96 KLLALEQRLWVLIEE-------LGTLLKPAALTGTL 124 (694)
T ss_pred HHHhhhhhhcccccc-------ccceeeeecccCcC
Confidence 222233346877544 57777777766554
No 299
>KOG2419 consensus Phosphatidylserine decarboxylase [Lipid transport and metabolism]
Probab=55.01 E-value=3.3 Score=47.91 Aligned_cols=175 Identities=13% Similarity=0.071 Sum_probs=92.1
Q ss_pred EEEEEEeecCcccCC-CCCCCCCCcEEEEEECCccceeeeeecCCCCCCceecceeeeeeccCCCC-cEEEEEEECCCCc
Q 042999 458 RVTVMEAQDLCIAHN-LPPLTAPEIRVKAQLALQSARTRRGSMNNHSSSFHWHEDVFFVAAEPFED-SLILLVEDRTAKD 535 (1006)
Q Consensus 458 ~V~v~~a~~L~~~~~-~d~~~~~dpyv~v~lg~~~~kT~~~~~~~~t~nP~w~e~~~f~v~~~~~~-~L~v~V~D~~~~~ 535 (1006)
-.++|.|.+++.-.+ ....-.-++++-..+|.+.++|+... .+.+|.|||. .|.+.+-... .|.
T Consensus 283 ll~lI~a~~~~~i~~~~~~~f~~~~~~itsf~~~~frt~~~~---~~e~piyNe~-~~E~~~Fqsn~~l~---------- 348 (975)
T KOG2419|consen 283 LLTLIGAEMKYDIVEDVAKLFKDKWLAITSFGEQTFRTEISD---DTEKPIYNED-EREDSDFQSNRYLG---------- 348 (975)
T ss_pred HHHHhhhhcccchhhhhhhccCCCchheeecchhhhhhhhhc---cccccccccc-ccccccchhhHHHh----------
Confidence 345566666643211 01122457888899999999999865 8999999997 4443322211 121
Q ss_pred cccceeEEEEEeccccccccccCcccceEEeCcCCCCCCCccceeeeEEEEEeeeCCccccccccccCCCCCccccccCC
Q 042999 536 AAAVILGHAVVPVSSIDQRIDERHVASKWFPLEGSCGRGCARSYCGRIQLKLCLEGGYHVLDEAAHVCSDFRPTAKQLWK 615 (1006)
Q Consensus 536 ~~d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L~~~~~~~~~~~~~G~l~l~v~l~~~~~~~d~~~~~~~~~~p~~~~l~~ 615 (1006)
..++|.+.+++.+-...-.-+......+..+...
T Consensus 349 --~kiv~~~~~~lndS~A~f~vq~~~sn~~~~~pE~-------------------------------------------- 382 (975)
T KOG2419|consen 349 --NKIVGYCELDLNDSYANFVVQRAKSNFFISEPES-------------------------------------------- 382 (975)
T ss_pred --hhccccccccccchhhhhhhhhhhccccccCccc--------------------------------------------
Confidence 4567777777665221000000001111111111
Q ss_pred CCcEEEEEEEeeccCCccCccCCC-CCCCCCeEEEEEECCEEEEeecccCCCCCeeccEEEEEEeCCCc--EEEEEEEEC
Q 042999 616 PPVGILELGILGARGLLPMKTKNG-GKGSTDAYCVAKYGKKWVRTRTITDCFDPRWNEQYTWQVYDPCT--VLTVGVFDN 692 (1006)
Q Consensus 616 ~~~g~L~v~v~~a~~L~~~~~~d~-~~g~sdpyv~v~~~~~~~rT~~~~~~~nP~wne~~~~~v~~~~~--~l~i~v~d~ 692 (1006)
..+.+.+..-...+|++.+..+. .+-..|||.++.+|...+.+..-....+|..++.-.+.+.+-.. .+.|.+++.
T Consensus 383 -~~~sfnl~~~a~sn~~a~r~~~S~T~~em~~~~~~~vG~~~~s~sie~~v~~~~c~~~~~~s~~d~~~~fk~sf~~~~~ 461 (975)
T KOG2419|consen 383 -TCKSFNLLDPASSNLPALRNRLSKTNYEMDPFIVIVVGSRFFSCSIEDPVETEECFAKRILSIVDYEEDFKLSFSEFSD 461 (975)
T ss_pred -cceEEEeecCCcccchhhhhccCccccccCchhHhhhhhHHhhhhhhccccchhhhhhhcccccccccCceEeeehHHH
Confidence 11122222222234444332211 05678999999999877777766667788777655555554322 455555554
Q ss_pred C
Q 042999 693 W 693 (1006)
Q Consensus 693 ~ 693 (1006)
.
T Consensus 462 l 462 (975)
T KOG2419|consen 462 L 462 (975)
T ss_pred H
Confidence 3
No 300
>PF06219 DUF1005: Protein of unknown function (DUF1005); InterPro: IPR010410 This is a family of plant proteins with undetermined function.
Probab=54.33 E-value=1.5e+02 Score=33.41 Aligned_cols=109 Identities=16% Similarity=0.254 Sum_probs=60.9
Q ss_pred CCCcEEEEEECCeeeeeeEeeccCCCCCCCCee---ceEEEEeccCCCC---C------CCEEEEEEEcCC---------
Q 042999 311 NEAPYVKIRTSSHYKKSKLASYRACDPHDSPEW---NQVFALFHNKNDS---V------SATLEITVWDSP--------- 369 (1006)
Q Consensus 311 ~~dpyv~v~~~~~~~~T~~~~~~~~~~~~nP~w---ne~f~f~~~~~~~---~------~~~l~i~V~D~~--------- 369 (1006)
.+..|++|++.+.-.+|..+.+.+.....-|.- --.|++...++.. . ...|+|.||.-.
T Consensus 35 sspCfC~IrL~~fP~Qta~vPLi~~~~~~~p~~~~~Aa~F~Ld~s~l~~l~~~~~f~~~~~~L~i~VY~Gr~G~tCGv~~ 114 (460)
T PF06219_consen 35 SSPCFCEIRLKGFPSQTAPVPLISSSEPEPPDSHSLAASFHLDKSDLRRLLAKPCFYSPRPCLEISVYTGRRGSTCGVGN 114 (460)
T ss_pred CCCeEEEEecCCCCccceeeeeccCCCCCCCCcCCcceEEecCHHHHHHHhCCCccccCCceEEEEEEECCCCCcccccc
Confidence 346799999999777777774444333322222 2356664333211 1 257999999843
Q ss_pred CCCccEEEEEeCCcCCCCCCCCCCCcceeEEcccCCCCCCcceeeEEEEEE
Q 042999 370 TENFLGGVCFDLSDVPVRDPPDSPLAPQWYRLEGEASDQNNRVSGDIQLAV 420 (1006)
Q Consensus 370 ~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~~~g~l~~~~ 420 (1006)
...+||.+.++|. +.........++..|..+.....+..+....+|++.+
T Consensus 115 ~~klLG~v~vpld-l~~ae~kp~v~hnGWi~iGk~~~~~~~~~~aeLHl~V 164 (460)
T PF06219_consen 115 SGKLLGKVRVPLD-LKWAEGKPVVFHNGWISIGKNKQGSGKSPSAELHLVV 164 (460)
T ss_pred cceEEEEEEEEec-cccccCCeeEEEccceecCCCCCCCCCCCcceEEEEE
Confidence 3689999998875 2222111234456777776654311122345555554
No 301
>KOG3543 consensus Ca2+-dependent activator protein [Signal transduction mechanisms]
Probab=52.02 E-value=65 Score=37.58 Aligned_cols=99 Identities=15% Similarity=0.291 Sum_probs=69.8
Q ss_pred EEEEEEeeccCCccCccCCCCCCCCCeEEEEEECCEEEEeecccCCCCCeeccEEEEEEeCCCcEEEEEEEECCCCCcCC
Q 042999 620 ILELGILGARGLLPMKTKNGGKGSTDAYCVAKYGKKWVRTRTITDCFDPRWNEQYTWQVYDPCTVLTVGVFDNWRMFADA 699 (1006)
Q Consensus 620 ~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~~~~~rT~~~~~~~nP~wne~~~~~v~~~~~~l~i~v~d~~~~~~~~ 699 (1006)
.++|.|.+.+||... ..+-=.||...+.++..+|... ....|.|..+-.|.-.+|-.++.+.+|-+..--
T Consensus 342 smevvvmevqglksv------apnrivyctmevegeklqtdqa-easkp~wgtqgdfstthplpvvkvklftestgv--- 411 (1218)
T KOG3543|consen 342 SMEVVVMEVQGLKSV------APNRIVYCTMEVEGEKLQTDQA-EASKPKWGTQGDFSTTHPLPVVKVKLFTESTGV--- 411 (1218)
T ss_pred eeeEEEeeecccccc------CCCeeEEEEEEecccccccchh-hhcCCCCCcCCCcccCCCCceeEEEEEeeccee---
Confidence 467889999999653 2234489999999988888653 345799999989988888888999999875421
Q ss_pred CCCCCCceeEEEEEEcccccCCceEeeEEEee
Q 042999 700 SEERPDYRIGKIRIRVSTLENNKVYTTSYPLL 731 (1006)
Q Consensus 700 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 731 (1006)
.+..|..||++-+.-..-.... ..|+.+.
T Consensus 412 -laledkelgrvil~ptpns~ks--~ewh~mt 440 (1218)
T KOG3543|consen 412 -LALEDKELGRVILQPTPNSAKS--PEWHTMT 440 (1218)
T ss_pred -EEeechhhCeEEEecCCCCcCC--ccceeee
Confidence 1236788999887544322222 4566553
No 302
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=51.98 E-value=36 Score=34.30 Aligned_cols=41 Identities=17% Similarity=0.210 Sum_probs=31.4
Q ss_pred eeeeeeEeeccCCCCCCCCeeceEEEEeccCCCCCCCEEEEEEEcC
Q 042999 323 HYKKSKLASYRACDPHDSPEWNQVFALFHNKNDSVSATLEITVWDS 368 (1006)
Q Consensus 323 ~~~~T~~~~~~~~~~~~nP~wne~f~f~~~~~~~~~~~l~i~V~D~ 368 (1006)
..++|-+. ..+.+|.|+|++.+.+.........|.++.+..
T Consensus 53 se~~S~V~-----yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~ 93 (189)
T cd08695 53 SEYRSFVL-----YHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHC 93 (189)
T ss_pred ceEEEEEE-----EcCCCCCCceeEEEecChhhCCCeeEEEEEEEe
Confidence 35788888 899999999999886654422278899988763
No 303
>PF07162 B9-C2: Ciliary basal body-associated, B9 protein; InterPro: IPR010796 Proteins in this entry include the MSK1 protein (Q9NXB0 from SWISSPROT) and other known or predicted flagellar basal body proteome components [] or cilia-containing species. Although the function is unknown, a cilia-specific role has been suggested for the poorly characterised B9 domain [, , ]. Mutations in MSK1 have been shown to cause Meckel syndrome type 1, a severe foetal development disorder that has been reported in most populations.
Probab=50.99 E-value=1.4e+02 Score=29.59 Aligned_cols=83 Identities=14% Similarity=0.175 Sum_probs=58.7
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEEC----------Ce-EEEeeCcCC-----CCCCeeeeEEEEEeeCCCCCCCce
Q 042999 18 LVVEVVDARDLLPKDGQGSSSPYVIADFD----------GQ-RKRTSTKFR-----DLNPVWNEPLEFIVSDPKNMDCEE 81 (1006)
Q Consensus 18 L~V~v~~a~~L~~~~~~g~~dPyv~v~~~----------~~-~~kT~~~~~-----t~nP~wne~f~f~~~~~~~~~~~~ 81 (1006)
+.=.|..|.+. ...+-||+..+. .. ...|.+... +..-.||-.|++.+.......-..
T Consensus 4 v~G~I~~a~~f------~~~~l~~~y~~~~g~~W~~~~g~~~~G~Tq~~~~~~~~~~~~~~f~~P~d~~~~~~~~~gwP~ 77 (168)
T PF07162_consen 4 VIGEIESAEGF------EEDNLYCRYQLVHGPDWKLISGLSLEGQTQISKSSSYGNDDVAVFNHPFDLHFKSTNPQGWPQ 77 (168)
T ss_pred EEEEEEEEECC------CCCCEEEEEEEEeCCCeEECCCCcceEEcceeecCcccCCCceEEeccEEEEEEeCCCCCCce
Confidence 34467788766 345679998872 22 355665542 334679999998887755443468
Q ss_pred EEEEEEeCCCCCCCCCCCCceeEEEEEeCe
Q 042999 82 LEIEVYNDKRYCNGSGRKNHFLGRVKLCGS 111 (1006)
Q Consensus 82 L~i~V~d~d~~~~~~~~~d~~lG~~~v~l~ 111 (1006)
|.|+||..|.. +++...|-..+.+-
T Consensus 78 L~l~V~~~D~~-----gr~~~~GYG~~~lP 102 (168)
T PF07162_consen 78 LVLQVYSLDSW-----GRDRVEGYGFCHLP 102 (168)
T ss_pred EEEEEEEEccc-----CCeEEeEEeEEEeC
Confidence 99999999999 78899988777664
No 304
>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function. It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.
Probab=49.63 E-value=40 Score=30.64 Aligned_cols=97 Identities=14% Similarity=0.069 Sum_probs=48.7
Q ss_pred EEEEEECC-eEEEeeCcCCCCCCeeeeEEEEEeeCCCC----CCCceEEEEEEeCCCCCCCCCCCCceeEEEEEeCeeee
Q 042999 40 YVIADFDG-QRKRTSTKFRDLNPVWNEPLEFIVSDPKN----MDCEELEIEVYNDKRYCNGSGRKNHFLGRVKLCGSQFA 114 (1006)
Q Consensus 40 yv~v~~~~-~~~kT~~~~~t~nP~wne~f~f~~~~~~~----~~~~~L~i~V~d~d~~~~~~~~~d~~lG~~~v~l~~l~ 114 (1006)
||.+.+-. +.+.|.++. +.+|.+|-+-.|.+.-... ++...+.++++..-.. ....+|.+.+++..++
T Consensus 2 Fct~dFydfEtq~Tpvv~-G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~g~------d~~tla~~~i~l~~ll 74 (107)
T PF11618_consen 2 FCTYDFYDFETQTTPVVR-GLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQALGS------DFETLAAGQISLRPLL 74 (107)
T ss_dssp EEEE-STT---EE---EE-SSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE-SS-------EEEEEEEEE--SHHH
T ss_pred EEEEEeeceeeeccccee-CCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeeccC------CeEEEEEEEeechhhh
Confidence 45555544 456777765 8999999988888765221 1256789999876533 5689999999999987
Q ss_pred eeCC-ceeEEEEceecCCceeeeEEEEEEEEE
Q 042999 115 RRGD-EGLVYFPLEKKSVFSWIRGEIGLRIYY 145 (1006)
Q Consensus 115 ~~~~-~~~~w~~L~~~~~~~~~~G~i~l~~~~ 145 (1006)
.... .......|..... ..-|.|...+..
T Consensus 75 ~~~~~~i~~~~~l~g~~~--~~~g~l~y~~rl 104 (107)
T PF11618_consen 75 ESNGERIHGSATLVGVSG--EDFGTLEYWIRL 104 (107)
T ss_dssp H--S--EEEEEEE-BSSS---TSEEEEEEEEE
T ss_pred cCCCceEEEEEEEeccCC--CeEEEEEEEEEe
Confidence 5444 3334455544332 246777766654
No 305
>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande
Probab=48.63 E-value=87 Score=31.57 Aligned_cols=63 Identities=5% Similarity=0.046 Sum_probs=42.5
Q ss_pred EEEEeecccCCCCCeeccEEEEEEeC---CCcEEEEEEEECCCCCcCC--CCCCCCceeEEEEEEccc
Q 042999 655 KWVRTRTITDCFDPRWNEQYTWQVYD---PCTVLTVGVFDNWRMFADA--SEERPDYRIGKIRIRVST 717 (1006)
Q Consensus 655 ~~~rT~~~~~~~nP~wne~~~~~v~~---~~~~l~i~v~d~~~~~~~~--~~~~~d~~lG~~~i~l~~ 717 (1006)
....|.+..++.+|.|+|++-+.+.- +...|.|+.|+-+-..+.+ ........+|-+-+||..
T Consensus 56 ~~~~s~V~yh~k~P~f~dEiKI~LP~~l~~~hHLlFtFyHvsc~~~~k~~~~~~~e~~~Gys~lPLl~ 123 (185)
T cd08697 56 TSAYAAVLHHNQNPEFYDEIKIELPTQLHEKHHLLFTFYHVSCDINKKGKKKDGVETPVGYAWLPLLK 123 (185)
T ss_pred eEEEEEEEEcCCCCccceeEEEecCCcCCCCeeEEEEEEeeccccccccccCCCccceEEEEEEeeec
Confidence 46788888899999999998777653 4557999999865321110 111134567877777765
No 306
>PF04842 DUF639: Plant protein of unknown function (DUF639); InterPro: IPR006927 The sequences in this family are plant proteins of unknown function.
Probab=47.76 E-value=27 Score=41.81 Aligned_cols=59 Identities=24% Similarity=0.411 Sum_probs=41.5
Q ss_pred HHHHHHHHhhHHhHhhhccccCchhHHHHHHHHHHHH---HHhhhhhhHHHHHHHhhhhccC
Q 042999 947 QTVLGDFATQGERVQALVSWRDPRATKLFIGVCTVIT---LVLYVVPPKMVAVALGFYYLRH 1005 (1006)
Q Consensus 947 Q~~l~~~a~~~e~i~~~~~w~~p~~t~~~~~~l~~~~---~~l~~iP~r~i~l~~~~~~~~h 1005 (1006)
+.+|-=+......++.+..|++|..|..|+++.+.+. .+-|++|.-+++++.+....||
T Consensus 493 kELL~Pl~~i~~~~~~l~~We~P~kt~~Fl~~~~~iI~r~wl~Y~~p~~Ll~~a~~Ml~~r~ 554 (683)
T PF04842_consen 493 KELLFPLIEIAKWLQKLASWEEPLKTLVFLALFLYIIYRGWLGYIFPAFLLFSAVFMLWLRY 554 (683)
T ss_pred HhccccHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555556777888899999999999988665554433 3567788777777666555554
No 307
>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand
Probab=46.29 E-value=79 Score=31.68 Aligned_cols=62 Identities=8% Similarity=-0.029 Sum_probs=41.4
Q ss_pred EEEEeecccCCCCCeeccEEEEEEeC---CCcEEEEEEEECCCCCcCCCCCCCCceeEEEEEEccc
Q 042999 655 KWVRTRTITDCFDPRWNEQYTWQVYD---PCTVLTVGVFDNWRMFADASEERPDYRIGKIRIRVST 717 (1006)
Q Consensus 655 ~~~rT~~~~~~~nP~wne~~~~~v~~---~~~~l~i~v~d~~~~~~~~~~~~~d~~lG~~~i~l~~ 717 (1006)
..+.|.+...+.+|.|++++-+.+.- ....|.|+.++-+--.+ +........+|-+-+||-+
T Consensus 54 ~~~~S~V~yHnk~P~f~DEiKi~LP~~l~~~hHLlFtF~Hvs~~~k-~~~~~~e~~~Gys~lPL~~ 118 (179)
T cd08696 54 TEAYTAVTYHNKSPDFYDEIKIKLPADLTDNHHLLFTFYHISCQKK-QEGGSVETPIGYTWLPLLR 118 (179)
T ss_pred eeEEEEEEEeCCCCcccceEEEEcCCCCCCCeEEEEEEEEeecccc-ccCCCccceEEEEEEeeec
Confidence 46788888889999999999877653 34579999998543210 0001124567877777753
No 308
>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins. Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo
Probab=43.16 E-value=60 Score=32.56 Aligned_cols=61 Identities=16% Similarity=0.176 Sum_probs=37.1
Q ss_pred EEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEeCCCCCCCCCCCCceeEEEEEeCe
Q 042999 50 KRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYNDKRYCNGSGRKNHFLGRVKLCGS 111 (1006)
Q Consensus 50 ~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~d~~~~~~~~~d~~lG~~~v~l~ 111 (1006)
.-+.++....+|.|+|+|.+.+..... ....|.|.+++...-..........+|-+.++|-
T Consensus 54 ~~~sv~~~~k~p~f~deiKi~LP~~l~-~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~ 114 (178)
T cd08679 54 EYTSVVYYHKNPVFNDEIKIQLPADLT-PQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLM 114 (178)
T ss_pred eEEEEEEcCCCCCCceeEEEecCCccC-CCeEEEEEEEccccccccCCCccceEEEEEEecc
Confidence 334444444999999999999855322 3678999999976441000022445666555544
No 309
>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand
Probab=38.77 E-value=79 Score=31.70 Aligned_cols=42 Identities=10% Similarity=0.173 Sum_probs=33.6
Q ss_pred EEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEeCCC
Q 042999 49 RKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYNDKR 91 (1006)
Q Consensus 49 ~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~d~ 91 (1006)
...|.+...+.+|.|+|++.+.+...... ...|.|+.++.+-
T Consensus 55 ~~~S~V~yHnk~P~f~DEiKi~LP~~l~~-~hHLlFtF~Hvs~ 96 (179)
T cd08696 55 EAYTAVTYHNKSPDFYDEIKIKLPADLTD-NHHLLFTFYHISC 96 (179)
T ss_pred eEEEEEEEeCCCCcccceEEEEcCCCCCC-CeEEEEEEEEeec
Confidence 47888888999999999999988764322 6789999998553
No 310
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=38.12 E-value=1e+02 Score=26.78 Aligned_cols=32 Identities=9% Similarity=0.297 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHhhHHhHhhhccccCchhHHH
Q 042999 943 AARVQTVLGDFATQGERVQALVSWRDPRATKL 974 (1006)
Q Consensus 943 ~~~vQ~~l~~~a~~~e~i~~~~~w~~p~~t~~ 974 (1006)
...++.....+.....+++.-+-|+.-+....
T Consensus 40 t~~L~~~a~~F~k~a~~l~r~~~~~~~k~~~i 71 (89)
T PF00957_consen 40 TEELSDNAKQFKKNAKKLKRKMWWRNYKLYII 71 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33345555555555566677778877544444
No 311
>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins. Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo
Probab=37.25 E-value=92 Score=31.23 Aligned_cols=57 Identities=12% Similarity=0.134 Sum_probs=38.2
Q ss_pred eecccCCCCCeeccEEEEEEeC---CCcEEEEEEEECCCCCcCCCCCCCCceeEEEEEEccc
Q 042999 659 TRTITDCFDPRWNEQYTWQVYD---PCTVLTVGVFDNWRMFADASEERPDYRIGKIRIRVST 717 (1006)
Q Consensus 659 T~~~~~~~nP~wne~~~~~v~~---~~~~l~i~v~d~~~~~~~~~~~~~d~~lG~~~i~l~~ 717 (1006)
|.++..+.+|.|++++.+.+.. +...|.|++++-..-.+. .......+|-+.+||-+
T Consensus 56 ~sv~~~~k~p~f~deiKi~LP~~l~~~~HLlFtf~hv~~~~~~--~~~~~~~~g~a~lpL~~ 115 (178)
T cd08679 56 TSVVYYHKNPVFNDEIKIQLPADLTPQHHLLFTFYHVSSKKKQ--GDKEETPFGYAFLPLMD 115 (178)
T ss_pred EEEEEcCCCCCCceeEEEecCCccCCCeEEEEEEEcccccccc--CCCccceEEEEEEeccc
Confidence 3444444899999999887743 456899999986532200 00146688888888875
No 312
>PF08151 FerI: FerI (NUC094) domain; InterPro: IPR012968 The ferlin gene family are characterised by multiple tandem C2 domains and a C-terminal transmembrane domain. They are found in a wide range of species and their function remains unknown, however, mutations in its two most well-characterised members, dysferlin and otoferlin, have been implicated in human disease []. This domain is present in proteins of the Ferlin family, which includes Otoferlin, Myoferlin and Dysferlin. It is often located between two C2 domains [].
Probab=36.97 E-value=47 Score=27.74 Aligned_cols=44 Identities=14% Similarity=0.286 Sum_probs=32.1
Q ss_pred EeccccccccccCcccceEEeCcCCCCCCCccceeeeEEEEEeeeCC
Q 042999 546 VPVSSIDQRIDERHVASKWFPLEGSCGRGCARSYCGRIQLKLCLEGG 592 (1006)
Q Consensus 546 i~l~~l~~~~~~~~~~~~w~~L~~~~~~~~~~~~~G~l~l~v~l~~~ 592 (1006)
+++..+..++++ ...++|..|..+.. .....+|.|++.+++.|.
T Consensus 1 ~DlgtVY~qP~H-~~~~KW~~L~dP~D--~~~G~kGYlKv~i~Vlg~ 44 (72)
T PF08151_consen 1 LDLGTVYNQPDH-QFYRKWALLTDPDD--TSAGVKGYLKVDISVLGP 44 (72)
T ss_pred CceeeeecCCCC-eeEeceEEecCCCC--CccCCceEEEEEEEEEcC
Confidence 456677776665 45789999998764 244568999999998763
No 313
>KOG1792 consensus Reticulon [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.43 E-value=2.8e+02 Score=29.09 Aligned_cols=37 Identities=8% Similarity=-0.031 Sum_probs=24.2
Q ss_pred HHHhhHHhHhhhccccCchhHHHHHHHHHHHHHHhhh
Q 042999 952 DFATQGERVQALVSWRDPRATKLFIGVCTVITLVLYV 988 (1006)
Q Consensus 952 ~~a~~~e~i~~~~~w~~p~~t~~~~~~l~~~~~~l~~ 988 (1006)
.++..+-.++.++.=+|+..+..+.+++++++.+-.+
T Consensus 132 ~in~~l~~l~~ia~~~d~~~~lk~~v~lw~lS~vGs~ 168 (230)
T KOG1792|consen 132 EINQALSELRDIALGRDLKDFLKVAVGLWILSYVGSL 168 (230)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHh
Confidence 4445555566666667777777777777777666533
No 314
>KOG3543 consensus Ca2+-dependent activator protein [Signal transduction mechanisms]
Probab=35.01 E-value=2.2e+02 Score=33.48 Aligned_cols=99 Identities=15% Similarity=0.238 Sum_probs=65.8
Q ss_pred EEEEEEEeecCcccCCCCCCCCCCcEEEEEECCccceeeeeecCCCCCCceecceeeeeeccCCCCcEEEEEEECCCC--
Q 042999 457 LRVTVMEAQDLCIAHNLPPLTAPEIRVKAQLALQSARTRRGSMNNHSSSFHWHEDVFFVAAEPFEDSLILLVEDRTAK-- 534 (1006)
Q Consensus 457 L~V~v~~a~~L~~~~~~d~~~~~dpyv~v~lg~~~~kT~~~~~~~~t~nP~w~e~~~f~v~~~~~~~L~v~V~D~~~~-- 534 (1006)
+.|.|.+.++|.+. .++ -=.||...+.|++.+|-.. ...-|.|+.+-+|.-..|. ..+.+.++-....
T Consensus 343 mevvvmevqglksv---apn--rivyctmevegeklqtdqa----easkp~wgtqgdfstthpl-pvvkvklftestgvl 412 (1218)
T KOG3543|consen 343 MEVVVMEVQGLKSV---APN--RIVYCTMEVEGEKLQTDQA----EASKPKWGTQGDFSTTHPL-PVVKVKLFTESTGVL 412 (1218)
T ss_pred eeEEEeeecccccc---CCC--eeEEEEEEecccccccchh----hhcCCCCCcCCCcccCCCC-ceeEEEEEeecceeE
Confidence 88999999999865 333 3479999998888888764 5778999998888765554 2456666654420
Q ss_pred ccccceeEEEEEeccccccccccCcccceEEeCcCCC
Q 042999 535 DAAAVILGHAVVPVSSIDQRIDERHVASKWFPLEGSC 571 (1006)
Q Consensus 535 ~~~d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L~~~~ 571 (1006)
.-.|.-+|++.+--.. +..-...|+.+.-+.
T Consensus 413 aledkelgrvil~ptp------ns~ks~ewh~mtvpk 443 (1218)
T KOG3543|consen 413 ALEDKELGRVILQPTP------NSAKSPEWHTMTVPK 443 (1218)
T ss_pred EeechhhCeEEEecCC------CCcCCccceeeecCC
Confidence 0026678877654221 112245688877654
No 315
>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=34.89 E-value=13 Score=44.29 Aligned_cols=52 Identities=13% Similarity=-0.006 Sum_probs=39.7
Q ss_pred CCeEEEEEECCEEE-EeecccCCCCCeeccEEEEEEeCCCcEEEEEEEECCCCC
Q 042999 644 TDAYCVAKYGKKWV-RTRTITDCFDPRWNEQYTWQVYDPCTVLTVGVFDNWRMF 696 (1006)
Q Consensus 644 sdpyv~v~~~~~~~-rT~~~~~~~nP~wne~~~~~v~~~~~~l~i~v~d~~~~~ 696 (1006)
.|||+.|.+.-+.. .+.+.+.+..|.|+++|.++|. ....+.|.||......
T Consensus 28 l~~y~~v~vk~~~~~~~~~~~~~~~~~~~~~F~~~v~-~~~~~~i~v~~~~~~~ 80 (694)
T KOG0694|consen 28 LQPYLAVELKVKQGAENMTKVELRIPELRETFHVEVV-AGGAKNIIVLLKSPDP 80 (694)
T ss_pred hhhhheeccceeecccccCCCCCCCchhhhheeeeee-cCCceEEEEEecCCcc
Confidence 58999998865444 6666778999999999999954 4556888888875443
No 316
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.35 E-value=1.2e+02 Score=27.71 Aligned_cols=33 Identities=9% Similarity=0.268 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHhhHHhHhhhccccCchhHHHHH
Q 042999 944 ARVQTVLGDFATQGERVQALVSWRDPRATKLFI 976 (1006)
Q Consensus 944 ~~vQ~~l~~~a~~~e~i~~~~~w~~p~~t~~~~ 976 (1006)
..+|.....+-...-+++--+-|.+-+...+++
T Consensus 67 d~L~~~as~F~~~A~klkrk~wWkn~Km~~il~ 99 (116)
T KOG0860|consen 67 DQLQAGASQFEKTAVKLKRKMWWKNCKMRIILG 99 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444555555677778998866554433
No 317
>PF14909 SPATA6: Spermatogenesis-assoc protein 6
Probab=33.23 E-value=3.8e+02 Score=25.59 Aligned_cols=89 Identities=18% Similarity=0.144 Sum_probs=61.2
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEECCeEEEeeCcCCCCCCeeeeEEEEEeeCCC---------CCCCceEEEEEE
Q 042999 17 KLVVEVVDARDLLPKDGQGSSSPYVIADFDGQRKRTSTKFRDLNPVWNEPLEFIVSDPK---------NMDCEELEIEVY 87 (1006)
Q Consensus 17 ~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~---------~~~~~~L~i~V~ 87 (1006)
.|.|+-+.|-+.-- ....|-|..|++-|+-++|+......-=.++|.|.|.-.... .+.+..+.|+++
T Consensus 3 eL~i~aVTCPGv~L---~~~~~vyL~v~~lg~~~~T~~~ppvFPllfhek~~FeK~F~~~~dp~~l~~~Le~e~~~iELi 79 (140)
T PF14909_consen 3 ELEIHAVTCPGVWL---CDKGDVYLSVCILGQYKRTRCLPPVFPLLFHEKFRFEKVFPNAVDPAQLADLLEDETVYIELI 79 (140)
T ss_pred EEEEEEEecCCeEe---CCCCCEEEEEEEcccEeecccCCCcCCeeEeeEEEeEEEecCCCCHHHHHHHhhcCcEEEEEE
Confidence 35666666655422 235688999999999999998865544468999999844322 223567888888
Q ss_pred eCCCCCCCCCCCCceeEEEEEeCeeee
Q 042999 88 NDKRYCNGSGRKNHFLGRVKLCGSQFA 114 (1006)
Q Consensus 88 d~d~~~~~~~~~d~~lG~~~v~l~~l~ 114 (1006)
..... ....|+..+-++.+++
T Consensus 80 Ql~~~------~g~iLA~ye~n~rDfL 100 (140)
T PF14909_consen 80 QLVPP------AGEILAYYEENTRDFL 100 (140)
T ss_pred EEeCC------CCcEEEEEeccccceE
Confidence 76655 3577777777777764
No 318
>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]
Probab=33.14 E-value=46 Score=41.11 Aligned_cols=103 Identities=17% Similarity=0.170 Sum_probs=73.1
Q ss_pred CCcEEEEEECCeE-EEeeCcCCC-CCCeeeeEEEEEeeCCCCCCCceEEEEEEeCCCCCCCCCCCCceeEEEEEeCeeee
Q 042999 37 SSPYVIADFDGQR-KRTSTKFRD-LNPVWNEPLEFIVSDPKNMDCEELEIEVYNDKRYCNGSGRKNHFLGRVKLCGSQFA 114 (1006)
Q Consensus 37 ~dPyv~v~~~~~~-~kT~~~~~t-~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~d~~~~~~~~~d~~lG~~~v~l~~l~ 114 (1006)
.++|+.+.+.... .+|....+. .+|.|.+.|...+... ...+.+.|-+.+.. +....+|.+.++.-.++
T Consensus 138 ~e~Ylt~~l~~~~~~~t~~~~~f~e~s~~~f~~~~~~~h~----~g~v~~~~~~~~~~-----G~s~~w~~v~~s~~~~~ 208 (887)
T KOG1329|consen 138 LENYLTVVLHKARYRRTHVIYEFLENSRWSFSFDIGFAHK----AGYVIFRVKGARVP-----GWSKRWGRVKISFLQYC 208 (887)
T ss_pred ccchheeeechhhhhchhhhhcccccchhhhhcccccccc----ccEEEEeecCCccc-----cceeEEEEeccchhhhh
Confidence 4889999887543 677777766 6899999998887775 45788999888887 55899999999988864
Q ss_pred eeCCceeEEEEceecCCcee-eeEEEEEEEEEEecC
Q 042999 115 RRGDEGLVYFPLEKKSVFSW-IRGEIGLRIYYYDEL 149 (1006)
Q Consensus 115 ~~~~~~~~w~~L~~~~~~~~-~~G~i~l~~~~~~~~ 149 (1006)
.+.....|+++........ ..-.+.+++.|....
T Consensus 209 -~~~~~~~~~~Il~~d~~~~~~~~~~~~~~~~~~~~ 243 (887)
T KOG1329|consen 209 -SGHRIGGWFPILDNDGKPHQKGSNESLRLGFTPME 243 (887)
T ss_pred -ccccccceeeeeccCCccccCCcccceEEeeEeec
Confidence 4455567887654332221 223455656666654
No 319
>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande
Probab=32.77 E-value=1.3e+02 Score=30.34 Aligned_cols=42 Identities=10% Similarity=0.161 Sum_probs=33.6
Q ss_pred eEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEeCC
Q 042999 48 QRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYNDK 90 (1006)
Q Consensus 48 ~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~d 90 (1006)
....|.+...+.+|.|.|++.+.+...... ...|.|+.|+.+
T Consensus 56 ~~~~s~V~yh~k~P~f~dEiKI~LP~~l~~-~hHLlFtFyHvs 97 (185)
T cd08697 56 TSAYAAVLHHNQNPEFYDEIKIELPTQLHE-KHHLLFTFYHVS 97 (185)
T ss_pred eEEEEEEEEcCCCCccceeEEEecCCcCCC-CeeEEEEEEeec
Confidence 347888888999999999999988764322 678999999865
No 320
>KOG2419 consensus Phosphatidylserine decarboxylase [Lipid transport and metabolism]
Probab=32.36 E-value=4.1 Score=47.13 Aligned_cols=61 Identities=21% Similarity=0.257 Sum_probs=45.6
Q ss_pred cEEEEEEEeeccCCccCccCCCC-CCCCCeEEEEEECCEEEEeecccCCCCCeeccEEEEEEeC
Q 042999 618 VGILELGILGARGLLPMKTKNGG-KGSTDAYCVAKYGKKWVRTRTITDCFDPRWNEQYTWQVYD 680 (1006)
Q Consensus 618 ~g~L~v~v~~a~~L~~~~~~d~~-~g~sdpyv~v~~~~~~~rT~~~~~~~nP~wne~~~~~v~~ 680 (1006)
.|..-++++.|.++++... +.. .-+.++++...++.+.+||+...++.+|+|||. .+.+.+
T Consensus 279 ~gi~ll~lI~a~~~~~i~~-~~~~~f~~~~~~itsf~~~~frt~~~~~~e~piyNe~-~~E~~~ 340 (975)
T KOG2419|consen 279 TGIALLTLIGAEMKYDIVE-DVAKLFKDKWLAITSFGEQTFRTEISDDTEKPIYNED-EREDSD 340 (975)
T ss_pred hhhHHHHHhhhhcccchhh-hhhhccCCCchheeecchhhhhhhhhccccccccccc-cccccc
Confidence 4555566777777766543 211 236789999999999999999999999999997 555544
No 321
>cd05137 RasGAP_CLA2_BUD2 CLA2/BUD2 functions as a GTPase-activating protein (GAP) for BUD1/RSR1 and is necessary for proper bud-site selection in yeast. BUD2 has sequence similarity to the catalytic domain of RasGAPs, and stimulates the hydrolysis of BUD1-GTP to BUD1-GDP. Elimination of Bud2p activity by mutation causes a random budding pattern with no growth defect. Overproduction of Bud2p also alters the budding pattern.
Probab=31.93 E-value=46 Score=38.00 Aligned_cols=45 Identities=18% Similarity=0.259 Sum_probs=24.0
Q ss_pred eEEEEEeCeeeeeeCCceeEEEEceecCCceeeeEEEEEEEEEEec
Q 042999 103 LGRVKLCGSQFARRGDEGLVYFPLEKKSVFSWIRGEIGLRIYYYDE 148 (1006)
Q Consensus 103 lG~~~v~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~~ 148 (1006)
+|.+.++++.++..+.....|+++......+...|.+ +++.|...
T Consensus 2 ~G~v~i~~~~~~~~~~~~e~w~~i~~~~~~~~~~~~l-lk~~~~~~ 46 (395)
T cd05137 2 VGRIDITLEMILDRGLDKETWLPIFDVDNKSVGEGLI-IKVSSEEN 46 (395)
T ss_pred eeEEEeehhhhccCCCCceeeeccccCCCCCcCcceE-EEEEeeec
Confidence 5666666666545555555666665544333334555 45555443
No 322
>PF14924 DUF4497: Protein of unknown function (DUF4497)
Probab=30.21 E-value=1.3e+02 Score=27.59 Aligned_cols=64 Identities=28% Similarity=0.345 Sum_probs=41.7
Q ss_pred CcEEEEEEEECCCCCcCCCCCCCCceeEEEEEEcccccC--------------CceEeeEEEeeeeccCCcccccEEEEE
Q 042999 682 CTVLTVGVFDNWRMFADASEERPDYRIGKIRIRVSTLEN--------------NKVYTTSYPLLVLLRTGLKKMGEIELA 747 (1006)
Q Consensus 682 ~~~l~i~v~d~~~~~~~~~~~~~d~~lG~~~i~l~~l~~--------------~~~~~~~~~L~~~~~~g~~~~G~l~l~ 747 (1006)
...|.+.+++-.... ......+||.+.|++.+... .......|+|.+.. |. ..|+|.+.
T Consensus 28 ~~pl~i~~~~~~~~~----~~~~~~liG~~~i~l~~~~~~i~~~~~~~~~~p~s~~~k~~f~L~~~~--~~-~~G~I~l~ 100 (112)
T PF14924_consen 28 SFPLYIVVKKVPPGF----PTPPPMLIGSCPISLAEAFNRILKDSAECNGQPSSKTIKGTFPLFDEN--GN-PVGEISLY 100 (112)
T ss_pred CCceEEEEEecCCCC----CCCccceeeEEEecHHHHHHHHHHHHHhhccCCCchhhcceeEeecCC--Cc-eeeeEEEE
Confidence 346788777643210 00156799999999987631 11345789998643 33 56999999
Q ss_pred EEEec
Q 042999 748 VRFVC 752 (1006)
Q Consensus 748 ~~~~~ 752 (1006)
+|.++
T Consensus 101 iRLsc 105 (112)
T PF14924_consen 101 IRLSC 105 (112)
T ss_pred EEEec
Confidence 99886
No 323
>KOG0904 consensus Phosphatidylinositol 3-kinase catalytic subunit (p110) [Signal transduction mechanisms]
Probab=29.97 E-value=96 Score=38.22 Aligned_cols=71 Identities=20% Similarity=0.182 Sum_probs=48.6
Q ss_pred cEEEEEEEEecCCCCCCCCCCCCcEEEEEEC----CeE----EEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEE
Q 042999 16 RKLVVEVVDARDLLPKDGQGSSSPYVIADFD----GQR----KRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVY 87 (1006)
Q Consensus 16 ~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~----~~~----~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~ 87 (1006)
..++|+++.+.++. ...+.|-+|.|..+ ++. ..|+-+....+|.||+...|++.-........|-|.||
T Consensus 343 ~~frI~l~~is~~n---~~~t~~~kV~V~~~lyhG~e~Lc~~~sTs~v~~~~~~~Wn~~leFDI~i~DLPr~ArLc~~i~ 419 (1076)
T KOG0904|consen 343 RPFRIKLVGISKVN---LPETVDLKVFVEAGLYHGTEVLCKTRSTSEVPGCSFPLWNEWLEFDIYIKDLPRMARLCLAIY 419 (1076)
T ss_pred CceEEEEeeccccC---CCcccceEEEEEEEEEECCeehhcccccCCCCCccchhccceeEeeeecCCCChhhhheeeee
Confidence 45778888887762 23456777777664 332 45556666889999999999987644334567888887
Q ss_pred eC
Q 042999 88 ND 89 (1006)
Q Consensus 88 d~ 89 (1006)
.-
T Consensus 420 ~v 421 (1076)
T KOG0904|consen 420 AV 421 (1076)
T ss_pred Ee
Confidence 64
No 324
>KOG4269 consensus Rac GTPase-activating protein BCR/ABR [Signal transduction mechanisms]
Probab=28.11 E-value=28 Score=42.53 Aligned_cols=90 Identities=20% Similarity=0.332 Sum_probs=60.9
Q ss_pred CcEEEEEEEeeccCCccCccCCCCCCCCCeEEEEEE---C--CEEEEeecccCCCCCeeccEEEEEEeCCCcEEEEEEEE
Q 042999 617 PVGILELGILGARGLLPMKTKNGGKGSTDAYCVAKY---G--KKWVRTRTITDCFDPRWNEQYTWQVYDPCTVLTVGVFD 691 (1006)
Q Consensus 617 ~~g~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~---~--~~~~rT~~~~~~~nP~wne~~~~~v~~~~~~l~i~v~d 691 (1006)
..|.+.+.+++|.+|.. ...-||.... | +-..+|+.+.+|.-|.||++++.++....+ ..|..++
T Consensus 757 ~ygflh~~vhsat~lkq---------s~~lY~Td~v~e~~~~~s~~st~~iadT~~~~~npe~hv~~~~sqS-~r~~~~e 826 (1112)
T KOG4269|consen 757 LYGFLHVIVHSATGLKQ---------SRNLYCTDEVDEFGYFVSKASTRVIADTAEPQWNPEKHVPVIESQS-SRLEKTE 826 (1112)
T ss_pred cccceeeeecccccccc---------ccceeeehhhhhhccccccccceeeecccCCCCChhcccchhhccc-cchhhhc
Confidence 47899999999999933 3567887764 3 456789999999999999999988865433 4466666
Q ss_pred CCCCCcCC---CCCCCCceeEEEEEEcc
Q 042999 692 NWRMFADA---SEERPDYRIGKIRIRVS 716 (1006)
Q Consensus 692 ~~~~~~~~---~~~~~d~~lG~~~i~l~ 716 (1006)
.+....-. -...++...|+..+.+.
T Consensus 827 k~~~~~k~~~~~~~~~~~~~~~~~~~l~ 854 (1112)
T KOG4269|consen 827 KSTPVEKLIDSHSQNSQNEEKRSRMKLD 854 (1112)
T ss_pred ccchHHHhhhccchhhcccccccccccC
Confidence 55321000 00124566777766654
No 325
>PF10409 PTEN_C2: C2 domain of PTEN tumour-suppressor protein; InterPro: IPR014020 Tensins constitute an eukaryotic family of lipid phosphatases that are defined by the presence of two adjacent domains: a lipid phosphatase domain and a C2-like domain. The tensin-type C2 domain has a structure similar to the classical C2 domain (see IPR000008 from INTERPRO) that mediates the Ca2+-dependent membrane recruitment of several signalling proteins. However the tensin-type C2 domain lacks two of the three conserved loops that bind Ca2+, and in this respect it is similar to the C2 domains of PKC-type [, ]. The tensin-type C2 domain can bind phopholipid membranes in a Ca2+ independent manner []. In the tumour suppressor protein PTEN, the best characterised member of the family, the lipid phosphatase domain was shown to specifically dephosphorylate the D3 position of the inositol ring of the lipid second messenger, phosphatydilinositol-3-4-5-triphosphate (PIP3). The lipid phosphatase domain contains the signature motif HCXXGXXR present in the active sites of protein tyrosine phosphatases (PTPs) and dual specificity phosphatases (DSPs). Furthermore, two invariant lysines are found only in the tensin-type phosphatase motif (HCKXGKXR) and are suspected to interact with the phosphate group at position D1 and D5 of the inositol ring [, ]. The C2 domain is found at the C terminus of the tumour suppressor protein PTEN (phosphatidyl-inositol triphosphate phosphatase). This domain may include a CBR3 loop, indicating a central role in membrane binding. This domain associates across an extensive interface with the N-terminal phosphatase domain DSPc suggesting that the C2 domain productively positions the catalytic part of the protein on the membrane. The crystal structure of the PTEN tumour suppressor has been solved []. The lipid phosphatase domain has a structure similar to the dual specificity phosphatase (see IPR000387 from INTERPRO). However, PTEN has a larger active site pocket that could be important to accommodate PI(3,4,5)P3. Proteins known to contain a phosphatase and a C2 tensin-type domain are listed below: Tensin, a focal-adhesion molecule that binds to actin filaments. It may be involved in cell migration, cartilage development and in linking signal transduction pathways to the cytoskeleton. Phosphatase and tensin homologue deleted on chromosome 10 protein (PTEN). It antagonizes PI 3-kinase signalling by dephosphorylating the 3-position of the inositol ring of PI(3,4,5)P3 and thus inactivates downstream signalling. It plays major roles both during development and in the adult to control cell size, growth, and survival. Auxilin. It binds clathrin heavy chain and promotes its assembly into regular cages. Cyclin G-associated kinase or auxilin-2. It is a potential regulator of clathrin-mediated membrane trafficking. ; GO: 0005515 protein binding; PDB: 3N0A_A 1D5R_A 3V0D_B 3V0H_B 3V0G_A 3V0F_B 3V0J_A 3V0I_A 3AWE_B 3AWG_C ....
Probab=27.98 E-value=3.6e+02 Score=25.29 Aligned_cols=91 Identities=12% Similarity=0.167 Sum_probs=50.0
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEECCeEE-EeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEeCCCCCCC
Q 042999 17 KLVVEVVDARDLLPKDGQGSSSPYVIADFDGQRK-RTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYNDKRYCNG 95 (1006)
Q Consensus 17 ~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~~~~-kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~d~~~~~ 95 (1006)
.|.++-+.-..++..+..+.+.||++|+-++... .|........-.=...+.+.+.....+ ...+.|.+|+.+...
T Consensus 5 ~l~L~~I~l~~iP~f~~~~gc~p~i~I~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~GDV~i~~~~~~~~~-- 81 (134)
T PF10409_consen 5 PLFLKSIILHGIPNFNSGGGCRPYIEIYNGGKKVFSTSKSYEDPKSYEQDSVIIELPKNLPL-RGDVLIKFYHKRSSS-- 81 (134)
T ss_dssp EEEEEEEEEES-TTSTTSSCCTEEEEEEETTEEEEETCCTCCCCCEEETTCEEEEEEEEEEE-ESEEEEEEEECETTE--
T ss_pred eEEEEEEEEECCCccCCCCCEEEEEEEECCCccEEEeccceeccccccceeEEEEeCCCCeE-eCCEEEEEEeCCCcc--
Confidence 4555555556676666667899999999887665 333322221111112333333221111 235888999877320
Q ss_pred CCCCCceeEEEEEeCee
Q 042999 96 SGRKNHFLGRVKLCGSQ 112 (1006)
Q Consensus 96 ~~~~d~~lG~~~v~l~~ 112 (1006)
..++.+.++.+...-
T Consensus 82 --~~~~~~f~~~FnT~F 96 (134)
T PF10409_consen 82 --MSKEKMFRFWFNTGF 96 (134)
T ss_dssp --CCCEEEEEEEEEGGG
T ss_pred --cccCeEEEEEEeeee
Confidence 356677777776554
No 326
>PF07162 B9-C2: Ciliary basal body-associated, B9 protein; InterPro: IPR010796 Proteins in this entry include the MSK1 protein (Q9NXB0 from SWISSPROT) and other known or predicted flagellar basal body proteome components [] or cilia-containing species. Although the function is unknown, a cilia-specific role has been suggested for the poorly characterised B9 domain [, , ]. Mutations in MSK1 have been shown to cause Meckel syndrome type 1, a severe foetal development disorder that has been reported in most populations.
Probab=27.95 E-value=5.4e+02 Score=25.39 Aligned_cols=77 Identities=17% Similarity=0.096 Sum_probs=51.3
Q ss_pred EEEeeccCCccCccCCCCCCCCCeEEEEEE--C--------CE-EEEeecccC-----CCCCeeccEEEEEEeC--CC--
Q 042999 623 LGILGARGLLPMKTKNGGKGSTDAYCVAKY--G--------KK-WVRTRTITD-----CFDPRWNEQYTWQVYD--PC-- 682 (1006)
Q Consensus 623 v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~--~--------~~-~~rT~~~~~-----~~nP~wne~~~~~v~~--~~-- 682 (1006)
-.|.+|.+.. ..+-||.-.+ | .. ...|++... +-.-.||.-|++.... +.
T Consensus 6 G~I~~a~~f~----------~~~l~~~y~~~~g~~W~~~~g~~~~G~Tq~~~~~~~~~~~~~~f~~P~d~~~~~~~~~gw 75 (168)
T PF07162_consen 6 GEIESAEGFE----------EDNLYCRYQLVHGPDWKLISGLSLEGQTQISKSSSYGNDDVAVFNHPFDLHFKSTNPQGW 75 (168)
T ss_pred EEEEEEECCC----------CCCEEEEEEEEeCCCeEECCCCcceEEcceeecCcccCCCceEEeccEEEEEEeCCCCCC
Confidence 3566777552 3466887665 3 23 456665542 3356799877776654 32
Q ss_pred cEEEEEEEECCCCCcCCCCCCCCceeEEEEEEcc
Q 042999 683 TVLTVGVFDNWRMFADASEERPDYRIGKIRIRVS 716 (1006)
Q Consensus 683 ~~l~i~v~d~~~~~~~~~~~~~d~~lG~~~i~l~ 716 (1006)
-.|.|+||..|.++ ++.+.|-..+.|-
T Consensus 76 P~L~l~V~~~D~~g-------r~~~~GYG~~~lP 102 (168)
T PF07162_consen 76 PQLVLQVYSLDSWG-------RDRVEGYGFCHLP 102 (168)
T ss_pred ceEEEEEEEEcccC-------CeEEeEEeEEEeC
Confidence 38999999999988 8889888777663
No 327
>PF14909 SPATA6: Spermatogenesis-assoc protein 6
Probab=25.96 E-value=3.3e+02 Score=26.05 Aligned_cols=86 Identities=13% Similarity=0.132 Sum_probs=58.9
Q ss_pred EEEEEEEeecCcccCCCCCCCCCCcEEEEEECCccceeeeeecCCCCCCceecceeeeeec-----cC-------CCCcE
Q 042999 457 LRVTVMEAQDLCIAHNLPPLTAPEIRVKAQLALQSARTRRGSMNNHSSSFHWHEDVFFVAA-----EP-------FEDSL 524 (1006)
Q Consensus 457 L~V~v~~a~~L~~~~~~d~~~~~dpyv~v~lg~~~~kT~~~~~~~~t~nP~w~e~~~f~v~-----~~-------~~~~L 524 (1006)
|.|+-+.|-+.-.. .+.|.|..|.+-|+-++|+-.. ..--=.++|.|.|.-. ++ ..+.+
T Consensus 4 L~i~aVTCPGv~L~------~~~~vyL~v~~lg~~~~T~~~p---pvFPllfhek~~FeK~F~~~~dp~~l~~~Le~e~~ 74 (140)
T PF14909_consen 4 LEIHAVTCPGVWLC------DKGDVYLSVCILGQYKRTRCLP---PVFPLLFHEKFRFEKVFPNAVDPAQLADLLEDETV 74 (140)
T ss_pred EEEEEEecCCeEeC------CCCCEEEEEEEcccEeecccCC---CcCCeeEeeEEEeEEEecCCCCHHHHHHHhhcCcE
Confidence 55566666555433 3568999999999888998643 2223346888877621 11 23478
Q ss_pred EEEEEECCCCccccceeEEEEEecccccc
Q 042999 525 ILLVEDRTAKDAAAVILGHAVVPVSSIDQ 553 (1006)
Q Consensus 525 ~v~V~D~~~~~~~d~~lG~~~i~l~~l~~ 553 (1006)
.++++-+.... ...|+...-+++++..
T Consensus 75 ~iELiQl~~~~--g~iLA~ye~n~rDfLf 101 (140)
T PF14909_consen 75 YIELIQLVPPA--GEILAYYEENTRDFLF 101 (140)
T ss_pred EEEEEEEeCCC--CcEEEEEeccccceEc
Confidence 88988877655 7899999999988765
No 328
>PF01544 CorA: CorA-like Mg2+ transporter protein; InterPro: IPR002523 The CorA transport system is the primary Mg2+ influx system of Salmonella typhimurium and Escherichia coli [, ]. CorA is virtually ubiquitous in the Bacteria and Archaea. There are also eukaryotic relatives of this protein. Transporter ZntB mediates efflux of zinc ions [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2HN1_A 3NWI_D 3NVO_B 3CK6_A 2IUB_E 2BBJ_E 2HN2_A 2BBH_A.
Probab=24.69 E-value=1.6e+02 Score=31.91 Aligned_cols=66 Identities=20% Similarity=0.339 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHhHhhhccccCchhHHHHHHHHHHHHHHhhhhhhHHHHHHHhhhhc
Q 042999 932 IRMRYDRLRMLAARVQTVLGDFATQGERVQALVSWRDPRATKLFIGVCTVITLVLYVVPPKMVAVALGFYYL 1003 (1006)
Q Consensus 932 ~~~~~~~l~~~~~~vQ~~l~~~a~~~e~i~~~~~w~~p~~t~~~~~~l~~~~~~l~~iP~r~i~l~~~~~~~ 1003 (1006)
+++.++.+..+..+++.+.+.+.+..+-..+..+-+ ....+-.|.++++++ +|+-+|.-++|.|+-
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----~n~~m~~LT~~t~if--lPlt~i~g~fGMN~~ 259 (292)
T PF01544_consen 194 LRDLLDRIERLLERAESLRERLESLQDLYQSKLSNR----QNRVMKVLTIVTAIF--LPLTFITGIFGMNFK 259 (292)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCH----HHHHHHHHHHHHHHH--HHHHHHTTSTTS-SS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH--HHHHHHHHHhhCCcc
Confidence 444455555555555555555555555555555544 233333333333333 666655555555543
No 329
>PF14963 CAML: Calcium signal-modulating cyclophilin ligand
Probab=23.84 E-value=2.8e+02 Score=29.02 Aligned_cols=34 Identities=21% Similarity=0.235 Sum_probs=22.0
Q ss_pred HHHHHHHHHhhcCcchhHHHHHHHHHHhhhcccc
Q 042999 860 LVHVLYLVLVWYPDLIVPTGFLYVVLIGVWYYRF 893 (1006)
Q Consensus 860 ~~~~~~~~~~~~p~l~~~~~~l~~~~~~~~~~~~ 893 (1006)
+++++=+++|-|-.++.|.+.|-+++..+..|..
T Consensus 170 lAv~VR~fvCkyLsi~~pfl~l~l~~~gl~~~~~ 203 (263)
T PF14963_consen 170 LAVFVRLFVCKYLSIFAPFLTLQLAYMGLSKYFP 203 (263)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhcc
Confidence 4555556677776777787777766666655544
No 330
>KOG4027 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.84 E-value=3.7e+02 Score=26.06 Aligned_cols=67 Identities=13% Similarity=0.108 Sum_probs=41.7
Q ss_pred CCCeEEEEEE--CCEEEEeeccc-----------CCCCC-eeccEEEEEEeC--CC--cEEEEEEEECCCCCcCCCCCCC
Q 042999 643 STDAYCVAKY--GKKWVRTRTIT-----------DCFDP-RWNEQYTWQVYD--PC--TVLTVGVFDNWRMFADASEERP 704 (1006)
Q Consensus 643 ~sdpyv~v~~--~~~~~rT~~~~-----------~~~nP-~wne~~~~~v~~--~~--~~l~i~v~d~~~~~~~~~~~~~ 704 (1006)
.+|-||+... |+.|.-+.... +--|| +||-.++...+. |. -.|.+.||-.|.+| +
T Consensus 25 ~~dv~~ky~~Vag~DW~~~~Gpqegvsq~s~~~r~~~~~iv~n~Pievt~KstsPygWPqivl~vfg~d~~G-------~ 97 (187)
T KOG4027|consen 25 ESDVCVKYSTVAGGDWKIINGPQEGVSQSSFSFRGADNQIVINLPIEVTLKSTSPYGWPQIVLNVFGKDHSG-------K 97 (187)
T ss_pred CCceEEEEEEEecCCceeccCcccchhhheeccccCCCceEEecceEEEeccCCCCCCceEEEEEecCCcCC-------c
Confidence 4678887765 55555433321 11122 455444333333 33 27999999999988 8
Q ss_pred CceeEEEEEEcc
Q 042999 705 DYRIGKIRIRVS 716 (1006)
Q Consensus 705 d~~lG~~~i~l~ 716 (1006)
|.+.|-..|++-
T Consensus 98 d~v~GYg~~hiP 109 (187)
T KOG4027|consen 98 DCVTGYGMLHIP 109 (187)
T ss_pred ceeeeeeeEecC
Confidence 999998888764
No 331
>PF08653 DASH_Dam1: DASH complex subunit Dam1; InterPro: IPR013962 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=22.38 E-value=3.7e+02 Score=21.49 Aligned_cols=47 Identities=9% Similarity=0.104 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHhHhhhccccCchhHHHHHHHHHH
Q 042999 932 IRMRYDRLRMLAARVQTVLGDFATQGERVQALVSWRDPRATKLFIGVCTV 981 (1006)
Q Consensus 932 ~~~~~~~l~~~~~~vQ~~l~~~a~~~e~i~~~~~w~~p~~t~~~~~~l~~ 981 (1006)
+..++..|.+.+..++..+.++..++|.+.+ |...++|.+.-+.+-.
T Consensus 3 l~~~f~eL~D~~~~L~~n~~~L~~ihesL~~---FNESFasfLYGl~mna 49 (58)
T PF08653_consen 3 LEPQFAELSDSMETLDKNMEQLNQIHESLSD---FNESFASFLYGLNMNA 49 (58)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 3466777777777888888888888777766 5555666554444433
No 332
>TIGR02302 aProt_lowcomp conserved hypothetical protein TIGR02302. Members of this family are long (~850 residue) bacterial proteins from the alpha Proteobacteria. Each has 2-3 predicted transmembrane helices near the N-terminus and a long C-terminal region that includes stretches of Gln/Gly-rich low complexity sequence, predicted by TMHMM to be outside the membrane. In Bradyrhizobium japonicum, two tandem reading frames are together homologous the single members found in other species; the cutoffs scores are set low enough that the longer scores above the trusted cutoff and the shorter above the noise cutoff for this model.
Probab=20.62 E-value=2.4e+02 Score=35.60 Aligned_cols=25 Identities=12% Similarity=0.179 Sum_probs=19.9
Q ss_pred ccccCchhHHHHHHHHHHHHHHhhh
Q 042999 964 VSWRDPRATKLFIGVCTVITLVLYV 988 (1006)
Q Consensus 964 ~~w~~p~~t~~~~~~l~~~~~~l~~ 988 (1006)
+..+||++-..++++++++++++..
T Consensus 133 ~a~~DP~aLR~~~~l~lv~a~~~a~ 157 (851)
T TIGR02302 133 LPIHDPWGLRALVVLLLVAAFAYSG 157 (851)
T ss_pred ccccCcHHHHHHHHHHHHHHHHHhC
Confidence 5779999999888888887776654
No 333
>KOG0904 consensus Phosphatidylinositol 3-kinase catalytic subunit (p110) [Signal transduction mechanisms]
Probab=20.15 E-value=3e+02 Score=34.29 Aligned_cols=69 Identities=16% Similarity=0.127 Sum_probs=42.6
Q ss_pred EEEEEEEeecCcccCCCCCCCCCCcEEEEEE----CCcccee-eeeecCCCCCCceecceeeeeecc---CCCCcEEEEE
Q 042999 457 LRVTVMEAQDLCIAHNLPPLTAPEIRVKAQL----ALQSART-RRGSMNNHSSSFHWHEDVFFVAAE---PFEDSLILLV 528 (1006)
Q Consensus 457 L~V~v~~a~~L~~~~~~d~~~~~dpyv~v~l----g~~~~kT-~~~~~~~~t~nP~w~e~~~f~v~~---~~~~~L~v~V 528 (1006)
++|.++.+.++.. ....|-+|.|.. |+++... +..+-+....+|.||+.++|.+.- |....|.|.|
T Consensus 345 frI~l~~is~~n~------~~t~~~kV~V~~~lyhG~e~Lc~~~sTs~v~~~~~~~Wn~~leFDI~i~DLPr~ArLc~~i 418 (1076)
T KOG0904|consen 345 FRIKLVGISKVNL------PETVDLKVFVEAGLYHGTEVLCKTRSTSEVPGCSFPLWNEWLEFDIYIKDLPRMARLCLAI 418 (1076)
T ss_pred eEEEEeeccccCC------CcccceEEEEEEEEEECCeehhcccccCCCCCccchhccceeEeeeecCCCChhhhheeee
Confidence 8888888877642 234566666655 5544432 222212247789999998888653 3345788887
Q ss_pred EEC
Q 042999 529 EDR 531 (1006)
Q Consensus 529 ~D~ 531 (1006)
+-.
T Consensus 419 ~~v 421 (1076)
T KOG0904|consen 419 YAV 421 (1076)
T ss_pred eEe
Confidence 765
Done!