BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043000
(634 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2Z6E|A Chain A, Crystal Structure Of Human Daam1 Fh2
pdb|2Z6E|B Chain B, Crystal Structure Of Human Daam1 Fh2
pdb|2Z6E|C Chain C, Crystal Structure Of Human Daam1 Fh2
pdb|2Z6E|D Chain D, Crystal Structure Of Human Daam1 Fh2
Length = 419
Score = 79.7 bits (195), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 67/252 (26%), Positives = 118/252 (46%), Gaps = 18/252 (7%)
Query: 326 LKPLHWDKVNKNVEHSMVWDKIDGGS-FR-FDGDLMEALFGYVA------TNRRSPTRER 377
LK +W K+ +N VW +ID F+ D + +E F N S +E
Sbjct: 17 LKSFNWSKLPENKLEGTVWTEIDDTKVFKILDLEDLERTFSAYQRQQDFFVNSNSKQKEA 76
Query: 378 NSKNSTGPNS----QVILLDARKSQNTAIVLKSLALSRGELLSAIL---DGKELNPETLE 430
++ + T + ++ ++D R++QN I+L L LS E+ AIL + ++L + LE
Sbjct: 77 DAIDDTLSSKLKVKELSVIDGRRAQNCNILLSRLKLSNDEIKRAILTMDEQEDLPKDMLE 136
Query: 431 KLTRVAPTKEEQSKILDFDGDPTRLADAESFHYHILKAVPSAYTRLNALLFRSNYDSEIA 490
+L + P K + + + + R+A A+ F + + + + RL +L F+ + +A
Sbjct: 137 QLLKFVPEKSDIDLLEEHKHELDRMAKADRFLFEMSR-INHYQQRLQSLYFKKKFAERVA 195
Query: 491 QFKETLQTLELGCXXXXXXXXXXXXXXXXXXXGNRMNAGTARGNAQAFNLTALRKLSDVK 550
+ K ++ + G GN MN G RGNA F +++L K++D K
Sbjct: 196 EVKPKVEAIRSGSEEVFRSGALKQLLEVVLAFGNYMNKGQ-RGNAYGFKISSLNKIADTK 254
Query: 551 ST-DGKTTLLHF 561
S+ D TLLH+
Sbjct: 255 SSIDKNITLLHY 266
>pdb|2J1D|G Chain G, Crystallization Of Hdaam1 C-Terminal Fragment
Length = 483
Score = 79.7 bits (195), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 67/252 (26%), Positives = 118/252 (46%), Gaps = 18/252 (7%)
Query: 326 LKPLHWDKVNKNVEHSMVWDKIDGGS-FR-FDGDLMEALFGYVA------TNRRSPTRER 377
LK +W K+ +N VW +ID F+ D + +E F N S +E
Sbjct: 15 LKSFNWSKLPENKLEGTVWTEIDDTKVFKILDLEDLERTFSAYQRQQDFFVNSNSKQKEA 74
Query: 378 NSKNSTGPNS----QVILLDARKSQNTAIVLKSLALSRGELLSAIL---DGKELNPETLE 430
++ + T + ++ ++D R++QN I+L L LS E+ AIL + ++L + LE
Sbjct: 75 DAIDDTLSSKLKVKELSVIDGRRAQNCNILLSRLKLSNDEIKRAILTMDEQEDLPKDMLE 134
Query: 431 KLTRVAPTKEEQSKILDFDGDPTRLADAESFHYHILKAVPSAYTRLNALLFRSNYDSEIA 490
+L + P K + + + + R+A A+ F + + + + RL +L F+ + +A
Sbjct: 135 QLLKFVPEKSDIDLLEEHKHELDRMAKADRFLFEMSR-INHYQQRLQSLYFKKKFAERVA 193
Query: 491 QFKETLQTLELGCXXXXXXXXXXXXXXXXXXXGNRMNAGTARGNAQAFNLTALRKLSDVK 550
+ K ++ + G GN MN G RGNA F +++L K++D K
Sbjct: 194 EVKPKVEAIRSGSEEVFRSGALKQLLEVVLAFGNYMNKGQ-RGNAYGFKISSLNKIADTK 252
Query: 551 ST-DGKTTLLHF 561
S+ D TLLH+
Sbjct: 253 SSIDKNITLLHY 264
>pdb|3O4X|E Chain E, Crystal Structure Of Complex Between Amino And Carboxy
Terminal Fragments Of Mdia1
pdb|3O4X|H Chain H, Crystal Structure Of Complex Between Amino And Carboxy
Terminal Fragments Of Mdia1
pdb|3O4X|G Chain G, Crystal Structure Of Complex Between Amino And Carboxy
Terminal Fragments Of Mdia1
pdb|3O4X|F Chain F, Crystal Structure Of Complex Between Amino And Carboxy
Terminal Fragments Of Mdia1
Length = 467
Score = 79.3 bits (194), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 61/248 (24%), Positives = 107/248 (43%), Gaps = 10/248 (4%)
Query: 323 HVKLKPLHWDK-VNKNVEHSMVWDKIDGGSFRFDGDLMEALFGYVATNRRSPTRE----- 376
V+L+ +W K V +++ W K+ F + + + A + S ++
Sbjct: 26 EVQLRRPNWSKFVAEDLSQDCFWTKVKEDRFENNELFAKLTLAFSAQTKTSKAKKDQEGG 85
Query: 377 -RNSKNSTGPNSQVILLDARKSQNTAIVLKSLALSRGELLSAILDGKE--LNPETLEKLT 433
++ +LD++ +QN +I L S + E+ + IL+ E L ++ L
Sbjct: 86 EEKKSVQKKKVKELKVLDSKTAQNLSIFLGSFRMPYQEIKNVILEVNEAVLTESMIQNLI 145
Query: 434 RVAPTKEEQSKILDFDGDPTRLADAESFHYHILKAVPSAYTRLNALLFRSNYDSEIAQFK 493
+ P E+ + + + LA++E F ++ VP RLNA+LF+ + ++ K
Sbjct: 146 KQMPEPEQLKMLSELKEEYDDLAESEQFGV-VMGTVPRLRPRLNAILFKLQFSEQVENIK 204
Query: 494 ETLQTLELGCXXXXXXXXXXXXXXXXXXXGNRMNAGTARGNAQAFNLTALRKLSDVKSTD 553
+ ++ C GN MNAG+ A FN++ L KL D KS D
Sbjct: 205 PEIVSVTAACEELRKSENFSSLLELTLLVGNYMNAGSRNAGAFGFNISFLCKLRDTKSAD 264
Query: 554 GKTTLLHF 561
K TLLHF
Sbjct: 265 QKMTLLHF 272
>pdb|3OBV|E Chain E, Autoinhibited Formin Mdia1 Structure
pdb|3OBV|F Chain F, Autoinhibited Formin Mdia1 Structure
pdb|3OBV|G Chain G, Autoinhibited Formin Mdia1 Structure
pdb|3OBV|H Chain H, Autoinhibited Formin Mdia1 Structure
Length = 457
Score = 79.0 bits (193), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 61/248 (24%), Positives = 107/248 (43%), Gaps = 10/248 (4%)
Query: 323 HVKLKPLHWDK-VNKNVEHSMVWDKIDGGSFRFDGDLMEALFGYVATNRRSPTRE----- 376
V+L+ +W K V +++ W K+ F + + + A + S ++
Sbjct: 7 EVQLRRPNWSKFVAEDLSQDCFWTKVKEDRFENNELFAKLTLAFSAQTKTSKAKKDQEGG 66
Query: 377 -RNSKNSTGPNSQVILLDARKSQNTAIVLKSLALSRGELLSAILDGKE--LNPETLEKLT 433
++ +LD++ +QN +I L S + E+ + IL+ E L ++ L
Sbjct: 67 EEKKSVQKKKVKELKVLDSKTAQNLSIFLGSFRMPYQEIKNVILEVNEAVLTESMIQNLI 126
Query: 434 RVAPTKEEQSKILDFDGDPTRLADAESFHYHILKAVPSAYTRLNALLFRSNYDSEIAQFK 493
+ P E+ + + + LA++E F ++ VP RLNA+LF+ + ++ K
Sbjct: 127 KQMPEPEQLKMLSELKEEYDDLAESEQFGV-VMGTVPRLRPRLNAILFKLQFSEQVENIK 185
Query: 494 ETLQTLELGCXXXXXXXXXXXXXXXXXXXGNRMNAGTARGNAQAFNLTALRKLSDVKSTD 553
+ ++ C GN MNAG+ A FN++ L KL D KS D
Sbjct: 186 PEIVSVTAACEELRKSENFSSLLELTLLVGNYMNAGSRNAGAFGFNISFLCKLRDTKSAD 245
Query: 554 GKTTLLHF 561
K TLLHF
Sbjct: 246 QKMTLLHF 253
>pdb|1V9D|A Chain A, Crystal Structure Of The Core Fh2 Domain Of Mouse Mdia1
pdb|1V9D|B Chain B, Crystal Structure Of The Core Fh2 Domain Of Mouse Mdia1
pdb|1V9D|C Chain C, Crystal Structure Of The Core Fh2 Domain Of Mouse Mdia1
pdb|1V9D|D Chain D, Crystal Structure Of The Core Fh2 Domain Of Mouse Mdia1
Length = 340
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 80/171 (46%), Gaps = 3/171 (1%)
Query: 393 DARKSQNTAIVLKSLALSRGELLSAILDGKE--LNPETLEKLTRVAPTKEEQSKILDFDG 450
D++ +QN +I L S + E+ + IL+ E L ++ L + P E+ + +
Sbjct: 13 DSKTAQNLSIFLGSFRMPYQEIKNVILEVNEAVLTESMIQNLIKQMPEPEQLKMLSELKE 72
Query: 451 DPTRLADAESFHYHILKAVPSAYTRLNALLFRSNYDSEIAQFKETLQTLELGCXXXXXXX 510
+ LA++E F ++ VP RLNA+LF+ + ++ K + ++ C
Sbjct: 73 EYDDLAESEQFGV-VMGTVPRLRPRLNAILFKLQFSEQVENIKPEIVSVTAACEELRKSE 131
Query: 511 XXXXXXXXXXXXGNRMNAGTARGNAQAFNLTALRKLSDVKSTDGKTTLLHF 561
GN MNAG+ A FN++ L KL D KS D K TLLHF
Sbjct: 132 NFSSLLELTLLVGNYMNAGSRNAGAFGFNISFLCKLRDTKSADQKMTLLHF 182
>pdb|4EAH|A Chain A, Crystal Structure Of The Formin Homology 2 Domain Of Fmnl3
Bound To Actin
pdb|4EAH|E Chain E, Crystal Structure Of The Formin Homology 2 Domain Of Fmnl3
Bound To Actin
pdb|4EAH|C Chain C, Crystal Structure Of The Formin Homology 2 Domain Of Fmnl3
Bound To Actin
pdb|4EAH|B Chain B, Crystal Structure Of The Formin Homology 2 Domain Of Fmnl3
Bound To Actin
Length = 402
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 67/246 (27%), Positives = 100/246 (40%), Gaps = 13/246 (5%)
Query: 325 KLKPLHWDKVNKNVEHSMVWDKIDGGSFRFDGDL--MEALFGYVATNRRSPTRER-NSKN 381
+L +W + N + V+ ++D D DL E LF T + P + SKN
Sbjct: 18 RLPVFNWTALKPNQINGTVFSELDDEKILEDLDLDRFEELFK---TKAQGPALDLICSKN 74
Query: 382 STGPN--SQVILLDARKSQNTAIVLKSLALSRGELLSAI--LDGKELNPETLEKLTRVAP 437
T S+V LL+A +++N AI L+ S E+ AI D + L + +E L R P
Sbjct: 75 KTAQKAASKVTLLEANRAKNLAITLRKAGRSAEEICRAIHTFDLQTLPVDFVECLMRFLP 134
Query: 438 TKEEQSKILDFDGD--PTRLADAESFHYHILKAVPSAYTRLNALLFRSNYDSEIAQFKET 495
T+ E + ++ + P AE + V R+ + F N+ +
Sbjct: 135 TEAEVKLLRQYERERQPLEELAAEDRFMLLFSKVERLTQRMAGMAFLGNFQDNLQMLTPQ 194
Query: 496 LQTLELGCXXXXXXXXXXXXXXXXXXXGNRMNAGTARGNAQAFNLTALRKLSDVKSTDGK 555
L + GN MN+ + RG F L +L L D KSTD K
Sbjct: 195 LNAIIAASASVKSSQKLKQMLEIILALGNYMNS-SKRGAVYGFKLQSLDLLLDTKSTDRK 253
Query: 556 TTLLHF 561
TLLHF
Sbjct: 254 MTLLHF 259
>pdb|1UX4|A Chain A, Crystal Structures Of A Formin Homology-2 Domain Reveal A
Tethered-Dimer Architecture
pdb|1UX4|B Chain B, Crystal Structures Of A Formin Homology-2 Domain Reveal A
Tethered-Dimer Architecture
Length = 410
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 58/263 (22%), Positives = 106/263 (40%), Gaps = 33/263 (12%)
Query: 323 HVKLKPLHWDKVNKNVEHSMVWDKIDGGSFRFDGDLMEALFGYVATNRRSPTRERNSKNS 382
H KLK LHW+K+ + + +W G + +F DL E G +A ++ R K+
Sbjct: 4 HKKLKQLHWEKL--DCTDNSIWGT--GKAEKFADDLYEK--GVLADLEKAFA-AREIKSL 56
Query: 383 TGPNSQVILLDARKSQNTAIVLKSL-ALSRGELLSAILDGKE---LNPETLEKLTR---- 434
++ L SQ I L +LS +L+ IL+ P +E L++
Sbjct: 57 ASKEFKITFLSRDISQQFGINLHMYSSLSVADLVKKILNCDRDFLQTPSVVEFLSKSEII 116
Query: 435 ---------VAPTKEEQSKILDFDG------DPTRLADAESFHYHILKAVPSAY-TRLNA 478
AP + + + + DP L A+ + ++ + S + +R+ A
Sbjct: 117 EVSVNLARNYAPYSTDWEGVRNLEDAKPPEKDPNDLQRADQIYLQLMVNLESYWGSRMRA 176
Query: 479 LLFRSNYDSEIAQFKETLQTLELGCXXXXXXXXXXXXXXXXXXXGNRMNAGTARGNAQAF 538
L ++Y+ E + L+ ++ GN MN + + AQ F
Sbjct: 177 LTVVTSYEREYNELLAKLRKVDKAVSALQESDNLRNVFNVILAVGNFMNDTSKQ--AQGF 234
Query: 539 NLTALRKLSDVKSTDGKTTLLHF 561
L+ L++L+ +K T T L++
Sbjct: 235 KLSTLQRLTFIKDTTNSMTFLNY 257
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.133 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,805,272
Number of Sequences: 62578
Number of extensions: 467554
Number of successful extensions: 989
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 971
Number of HSP's gapped (non-prelim): 7
length of query: 634
length of database: 14,973,337
effective HSP length: 105
effective length of query: 529
effective length of database: 8,402,647
effective search space: 4445000263
effective search space used: 4445000263
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 54 (25.4 bits)