Query 043000
Match_columns 634
No_of_seqs 385 out of 1506
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 11:46:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043000.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043000hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1924 RhoA GTPase effector D 100.0 2.3E-56 4.9E-61 490.5 26.6 269 316-587 616-890 (1102)
2 smart00498 FH2 Formin Homology 100.0 2.1E-56 4.6E-61 490.6 18.4 305 319-629 3-314 (432)
3 PF02181 FH2: Formin Homology 100.0 2.1E-50 4.5E-55 434.4 19.2 262 318-585 3-268 (370)
4 KOG1922 Rho GTPase effector BN 100.0 2.8E-44 6E-49 423.4 29.6 285 320-634 390-680 (833)
5 KOG1923 Rac1 GTPase effector F 100.0 8.4E-38 1.8E-42 346.4 16.7 261 317-582 362-630 (830)
6 KOG1925 Rac1 GTPase effector F 100.0 4.7E-32 1E-36 288.2 19.1 235 324-571 282-528 (817)
7 KOG1924 RhoA GTPase effector D 99.9 1.3E-24 2.8E-29 240.9 14.0 235 336-633 623-892 (1102)
8 KOG1923 Rac1 GTPase effector F 96.6 0.16 3.5E-06 59.2 20.0 31 599-634 608-638 (830)
9 smart00498 FH2 Formin Homology 94.6 0.011 2.4E-07 65.9 0.6 95 531-633 161-274 (432)
10 KOG3671 Actin regulatory prote 94.3 0.29 6.3E-06 54.7 10.5 9 340-348 495-503 (569)
11 PHA03247 large tegument protei 92.7 1.3 2.8E-05 58.1 13.6 13 495-507 3110-3122(3151)
12 KOG3671 Actin regulatory prote 91.8 1.2 2.6E-05 50.0 10.5 7 108-114 131-137 (569)
13 PHA03247 large tegument protei 90.6 1.4 3.1E-05 57.7 10.9 9 339-347 3024-3032(3151)
14 PF06679 DUF1180: Protein of u 89.0 3.5 7.7E-05 40.3 10.1 8 5-12 11-18 (163)
15 PF02181 FH2: Formin Homology 88.7 0.61 1.3E-05 50.7 5.2 181 422-634 74-273 (370)
16 KOG1922 Rho GTPase effector BN 82.7 23 0.0005 43.1 14.9 78 136-213 198-280 (833)
17 KOG1830 Wiskott Aldrich syndro 81.9 26 0.00056 39.1 13.2 8 399-406 489-496 (518)
18 KOG4672 Uncharacterized conser 76.7 38 0.00083 37.6 12.5 12 408-419 469-480 (487)
19 KOG4025 Putative apoptosis rel 67.3 19 0.00041 35.4 6.8 94 412-527 54-148 (207)
20 KOG4672 Uncharacterized conser 56.9 83 0.0018 35.1 10.2 9 195-203 266-274 (487)
21 PRK15319 AIDA autotransporter- 53.9 22 0.00047 46.3 5.9 8 342-349 1763-1770(2039)
22 KOG0132 RNA polymerase II C-te 46.1 2E+02 0.0044 34.7 11.7 7 175-181 516-522 (894)
23 KOG1830 Wiskott Aldrich syndro 42.4 1.7E+02 0.0037 32.9 9.8 10 424-433 485-494 (518)
24 PF06679 DUF1180: Protein of u 32.9 2.9E+02 0.0062 27.2 8.9 6 6-11 6-11 (163)
25 KOG1925 Rac1 GTPase effector F 32.6 1.3E+02 0.0027 34.6 7.1 17 319-335 298-314 (817)
26 PF05659 RPW8: Arabidopsis bro 28.6 1.3E+02 0.0028 28.9 5.7 108 408-516 12-130 (147)
27 PF02480 Herpes_gE: Alphaherpe 26.6 22 0.00047 40.2 0.0 36 82-117 349-384 (439)
28 PF07462 MSP1_C: Merozoite sur 24.3 1E+02 0.0022 35.6 4.7 33 132-166 354-386 (574)
29 PF11916 Vac14_Fig4_bd: Vacuol 24.3 4.7E+02 0.01 26.3 8.8 115 402-517 11-134 (182)
30 PF10112 Halogen_Hydrol: 5-bro 23.1 2.5E+02 0.0054 27.9 6.9 56 448-506 117-179 (199)
31 KOG4500 Rho/Rac GTPase guanine 23.1 70 0.0015 36.2 3.0 54 509-564 326-383 (604)
32 KOG1936 Histidyl-tRNA syntheta 22.8 1.5E+02 0.0033 33.5 5.5 82 393-476 231-313 (518)
33 KOG4552 Vitamin-D-receptor int 22.7 2.8E+02 0.0061 28.4 6.9 58 414-478 13-75 (272)
34 PHA03373 tegument protein; Pro 22.7 85 0.0019 32.3 3.3 92 451-559 54-150 (247)
35 PF08693 SKG6: Transmembrane a 22.6 27 0.00058 26.4 -0.2 9 83-91 8-16 (40)
36 PF03750 DUF310: Protein of un 21.0 6.1E+02 0.013 23.3 8.4 16 509-524 98-113 (119)
37 PF11215 DUF3010: Protein of u 21.0 29 0.00063 33.1 -0.3 28 521-548 66-93 (138)
38 PHA03378 EBNA-3B; Provisional 20.8 8.5E+02 0.018 29.4 11.0 98 217-314 694-803 (991)
39 PF06419 COG6: Conserved oligo 20.4 4E+02 0.0087 31.5 8.8 117 395-517 94-212 (618)
No 1
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=100.00 E-value=2.3e-56 Score=490.54 Aligned_cols=269 Identities=24% Similarity=0.399 Sum_probs=232.7
Q ss_pred cCCCCCCCcCCcccccccCC-ccccccccccccCCCCcccc--hhHHHHhhhhccccCCCCccc-cCCCCCCCCCCceee
Q 043000 316 ETGNGNGHVKLKPLHWDKVN-KNVEHSMVWDKIDGGSFRFD--GDLMEALFGYVATNRRSPTRE-RNSKNSTGPNSQVIL 391 (634)
Q Consensus 316 ~~~~~~p~~KlK~LhW~Kv~-~~~~k~TVW~ki~~~s~~~D--ee~lE~lF~~~~~~~~s~~~~-~~~~~~~~~~~~i~i 391 (634)
.++...+...||+++|.||. .+..+..+|-++.++.+.-| +..++..|+.+...++..... .+.+..+++.+...|
T Consensus 616 pKK~~k~e~~Mrr~nW~kI~p~d~s~~cFWvkv~Edk~en~dlfakL~~~Fatq~k~~k~~e~~eekkt~~kKk~kel~i 695 (1102)
T KOG1924|consen 616 PKKVYKPEVPMRRFNWSKIVPRDLSENCFWVKVNEDKLENDDLFAKLALKFATQPKVKKEQEGGEEKKTGTKKKVKELRI 695 (1102)
T ss_pred ccccCCCCCccccCCccccCccccCccceeeecchhhccchHHHHHHHHHhhccccccccccccccccchhhhhhhhhee
Confidence 46777889999999999985 45567899999988776544 245666787654332222111 111122445667899
Q ss_pred cChhhhhhHHHHhhhcCCCHHHHHHHhhcC--CCCCHHHHHHHHhhCCChHHHHhhhhccCCCCCCChhhHHHHHHHhcC
Q 043000 392 LDARKSQNTAIVLKSLALSRGELLSAILDG--KELNPETLEKLTRVAPTKEEQSKILDFDGDPTRLADAESFHYHILKAV 469 (634)
Q Consensus 392 LD~KRaqNiaI~L~~L~~s~eei~~aLld~--~~L~~e~Le~Llk~~Pt~EE~~~L~~y~gd~~~L~~aE~Fl~~Llk~I 469 (634)
||.|.+||++|+|.+|+|+.+||+.+|++. +.|+...|++|.+.+|.+|.+.+|++++...+.|.+.|||...|. .|
T Consensus 696 lDsKtaQnLsIflgS~rmpyeeik~~ILevne~vLse~~iqnLik~lPe~E~l~~L~e~Kaeye~l~e~EQF~vvm~-~v 774 (1102)
T KOG1924|consen 696 LDSKTAQNLSIFLGSFRMPYEEIKNVILEVNEDVLSESMIQNLIKHLPEQEQLNKLSELKAEYEDLPEPEQFVVVMS-QV 774 (1102)
T ss_pred cchHHHHHHHHHHhhccCCHHHHHHHHhhccHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhccCCCCHHHHhHHHh-hc
Confidence 999999999999999999999999999864 589999999999999999999999999888899999999999876 89
Q ss_pred CCHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccccccCCCCCCeeeeecccccccccc
Q 043000 470 PSAYTRLNALLFRSNYDSEIAQFKETLQTLELGCKELRTRGLLLKLLEAILKAGNRMNAGTARGNAQAFNLTALRKLSDV 549 (634)
Q Consensus 470 P~~~~RL~amlf~~~f~~ev~~l~~~l~~l~~Ac~eLr~S~~f~kLLe~VL~iGN~mN~Gt~RG~A~GFkL~sL~KL~dv 549 (634)
.++.-||++++|+.+|.+.+++|+..+..+..||+|||+|+.|.+||++||.+|||||+|+...+|+||++++|.||.||
T Consensus 775 krL~pRL~~ilFKl~fse~vnniKP~i~avt~ACEE~rkSesFs~lLeLvLl~GNyMn~gSrNa~afgF~is~L~kL~dT 854 (1102)
T KOG1924|consen 775 KRLRPRLSAILFKLTFSEQVNNIKPDIVAVTAACEELRKSESFSKLLELVLLVGNYMNSGSRNAQAFGFNISFLCKLRDT 854 (1102)
T ss_pred cccChhHHHHHHHhhHHHHHhhcChHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcccccccccchhhccchHHHHhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999899999999999999999
Q ss_pred cCCCCCccHHHHHHHHHHHhhCchhhhcccccccCCCC
Q 043000 550 KSTDGKTTLLHFVVEEVVRAEGRRCVINRNRSLSRSGS 587 (634)
Q Consensus 550 Ks~d~ktTLLhfvve~i~rsEg~~~~l~~~~~l~~~~s 587 (634)
|++|+|+|||||+++.+++ .++..++|.+||.|...
T Consensus 855 KsaDqk~TLLHfLae~~e~--kypd~l~F~ddl~hv~k 890 (1102)
T KOG1924|consen 855 KSADQKTTLLHFLAEICEE--KYPDILKFPDDLEHVEK 890 (1102)
T ss_pred cccchhhHHHHHHHHHHHH--hChhhhcchhhHHHHHh
Confidence 9999999999999999985 46688999999988654
No 2
>smart00498 FH2 Formin Homology 2 Domain. FH proteins control rearrangements of the actin cytoskeleton, especially in the context of cytokinesis and cell polarisation. Members of this family have been found to interact with Rho-GTPases, profilin and other actin-assoziated proteins. These interactions are mediated by the proline-rich FH1 domain, usually located in front of FH2 (but not listed in SMART). Despite this cytosolic function, vertebrate formins have been assigned functions within the nucleus. A set of Formin-Binding Proteins (FBPs) has been shown to bind FH1 with their WW domain.
Probab=100.00 E-value=2.1e-56 Score=490.64 Aligned_cols=305 Identities=37% Similarity=0.530 Sum_probs=253.5
Q ss_pred CCCCCcCCcccccccCCccccccccccccCCCCcccchhHHHHhhhhccccCCCCcc-cc-CCCCCCCCCCceeecChhh
Q 043000 319 NGNGHVKLKPLHWDKVNKNVEHSMVWDKIDGGSFRFDGDLMEALFGYVATNRRSPTR-ER-NSKNSTGPNSQVILLDARK 396 (634)
Q Consensus 319 ~~~p~~KlK~LhW~Kv~~~~~k~TVW~ki~~~s~~~Dee~lE~lF~~~~~~~~s~~~-~~-~~~~~~~~~~~i~iLD~KR 396 (634)
...|+.+||+|||+||...+.++|||+++++.+ .+|+++||++|+++......... .. ......++.+.++|||+||
T Consensus 3 ~~~P~~klK~l~W~ki~~~~~~~tvW~~i~~~~-~~d~~~lE~lF~~k~~~~~~~~~~~~~~~~~~~~~~~~v~ild~kr 81 (432)
T smart00498 3 EPKPKKKLKPLHWDKLNPLDPRGTVWDKIDENS-EGDLDELEELFAAKEKTKSASKDVSEKKSILKKKVSQEFKILDPKR 81 (432)
T ss_pred CCCCCCCCcCcCceeCCCccccCChhhhcCccc-ccCHHHHHHHhCcCccccCccccccccccccccccccceEeechhH
Confidence 346789999999999998889999999999876 79999999999976543221110 10 0011223456799999999
Q ss_pred hhhHHHHhhhcCCCHHHHHHHhhcC--CCCCHHHHHHHHhhCCChHHHHhhhhccCC-CCCCChhhHHHHHHHhcCCCHH
Q 043000 397 SQNTAIVLKSLALSRGELLSAILDG--KELNPETLEKLTRVAPTKEEQSKILDFDGD-PTRLADAESFHYHILKAVPSAY 473 (634)
Q Consensus 397 aqNiaI~L~~L~~s~eei~~aLld~--~~L~~e~Le~Llk~~Pt~EE~~~L~~y~gd-~~~L~~aE~Fl~~Llk~IP~~~ 473 (634)
+|||+|+|++|+++.++|++||+++ ..|+.+.|+.|++++||.||+.+|++|.|+ ...|+++|+|+++|+ .||++.
T Consensus 82 s~ni~I~L~~l~~~~~ei~~ai~~~d~~~l~~e~l~~L~~~~Pt~eE~~~l~~~~~~~~~~L~~~Eqfl~~l~-~ip~~~ 160 (432)
T smart00498 82 SQNLAILLRKLHMSYEEICEAILEGDEDVLSVDLLEQLLKYAPTKEELKKLREYKEEDPEELARAEQFLLLIS-NIPYLE 160 (432)
T ss_pred HhhHHHHHHhcCCCHHHHHHHHHhcChhhCCHHHHHHHHhhCcCHHHHHHHHHhcccchhhcchHHHHHHHHh-CCCCHH
Confidence 9999999999999999999999855 489999999999999999999999999987 899999999999998 699999
Q ss_pred HHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccccccCCCCCCeeeeecccccccccccCCC
Q 043000 474 TRLNALLFRSNYDSEIAQFKETLQTLELGCKELRTRGLLLKLLEAILKAGNRMNAGTARGNAQAFNLTALRKLSDVKSTD 553 (634)
Q Consensus 474 ~RL~amlf~~~f~~ev~~l~~~l~~l~~Ac~eLr~S~~f~kLLe~VL~iGN~mN~Gt~RG~A~GFkL~sL~KL~dvKs~d 553 (634)
+||+||+|+.+|++++.+|+..+.+|..||++|++|+.|++||++||++|||||+|+.||+|+||+|++|.||.|||++|
T Consensus 161 ~Rl~~~~f~~~f~~~~~~l~~~l~~l~~a~~~l~~S~~l~~lL~~iL~~GN~mN~g~~rg~A~GFkL~sL~KL~d~Ks~d 240 (432)
T smart00498 161 ERLNALLFKANFEEEVEDLKPQLEKVEAACEELRESKKFRKLLELILAIGNYMNSGSRRGQAYGFKLSSLLKLSDVKSAD 240 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHhCcccCCCcCCCcceeeHHHHHHHHhhhccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccHHHHHHHHHHHhhCchhhhcccccccCCCCCCCCCCCCCCC--CCCCChhHHHHHHHhcCcchhcccchhhhhh
Q 043000 554 GKTTLLHFVVEEVVRAEGRRCVINRNRSLSRSGSSRNSSSGSLTS--ENSTPKEEKEKEYMRLGLPVIGGLSAEFSNV 629 (634)
Q Consensus 554 ~ktTLLhfvve~i~rsEg~~~~l~~~~~l~~~~s~~~~~~~~~~~--~~~~~~~~~~~~y~~~gl~~v~~l~~el~~v 629 (634)
+++|||||||++|+++++ .+++|.+++.+.......+ +.+. ..........-++...+|+.+.++++++.+|
T Consensus 241 ~k~tLLhylv~~i~~~~p--~~~~f~~el~~v~~askvs--~~l~~~~~~l~~~~~~~e~~~~~l~~~~~~~d~f~~~ 314 (432)
T smart00498 241 NKTTLLHFLVKIIRKKYP--DLLDFYSDLHHLDKAKVNL--EQLEKDVKQLERQIKNLETDLGGLSDPENLDDKFIEV 314 (432)
T ss_pred CCccHHHHHHHHHHHhCh--hhccchhhhccHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhcCCCCCccchHHHH
Confidence 999999999999999876 6677777776543221111 0000 0001111112245566788888888888888
No 3
>PF02181 FH2: Formin Homology 2 Domain; InterPro: IPR015425 Formin homology (FH) proteins play a crucial role in the reorganisation of the actin cytoskeleton, which mediates various functions of the cell cortex including motility, adhesion, and cytokinesis []. Formins are multidomain proteins that interact with diverse signalling molecules and cytoskeletal proteins, although some formins have been assigned functions within the nucleus. Formins are characterised by the presence of three FH domains (FH1, FH2 and FH3), although members of the formin family do not necessarily contain all three domains []. The proline-rich FH1 domain mediates interactions with a variety of proteins, including the actin-binding protein profilin, SH3 (Src homology 3) domain proteins, and WW domain proteins. The FH2 domain is required for the self-association of formin proteins through the ability of FH2 domains to directly bind each other [], and may also act to inhibit actin polymerisation []. The FH3 domain (IPR010472 from INTERPRO) is less well conserved and may be important for determining intracellular localisation of formin family proteins. In addition, some formins can contain a GTPase-binding domain (GBD) (IPR010473 from INTERPRO) required for binding to Rho small GTPases, and a C-terminal conserved Dia-autoregulatory domain (DAD). This entry represents the FH2 domain, which was shown by X-ray crystallography to have an elongated, crescent shape containing three helical subdomains [].; PDB: 1Y64_B 1UX4_A 1UX5_A 3O4X_H 3OBV_E 1V9D_D 2Z6E_B 2J1D_G.
Probab=100.00 E-value=2.1e-50 Score=434.37 Aligned_cols=262 Identities=39% Similarity=0.624 Sum_probs=216.5
Q ss_pred CCCCCCcCCcccccccCCccccccccccccCCCC--cccchhHHHHhhhhccccCCCCccccCCCCCCCCCCceeecChh
Q 043000 318 GNGNGHVKLKPLHWDKVNKNVEHSMVWDKIDGGS--FRFDGDLMEALFGYVATNRRSPTRERNSKNSTGPNSQVILLDAR 395 (634)
Q Consensus 318 ~~~~p~~KlK~LhW~Kv~~~~~k~TVW~ki~~~s--~~~Dee~lE~lF~~~~~~~~s~~~~~~~~~~~~~~~~i~iLD~K 395 (634)
....++.+||+|||++|.....++|||++++..+ ..+|.+.||++|+.+........ ......++.+.++|||.|
T Consensus 3 ~~~~p~~k~k~l~W~~i~~~~~~~tiW~~~~~~~~~~~~d~~~le~~F~~~~~~~~~~~---~~~~~~~~~~~~~iLd~k 79 (370)
T PF02181_consen 3 KKPKPKKKLKPLHWDKIPNSKIKGTIWSKIDEDEFNIDIDFEELEELFAKKEKEKKSKK---KQASKKKKKKKISILDPK 79 (370)
T ss_dssp -----SS-B------EESSGGCTTSCCCCTCCHHHHCTSHHHHHHHHTBSCECHHHH-------HCCCCTTCCESSS-HH
T ss_pred CCCCCCCCCcCCCceecCcccccCCccccCcccccchhhhHHHHHHHhccccccccccc---cccccccccccccccchH
Confidence 3456889999999999998899999999999765 36788999999987653211110 112345577889999999
Q ss_pred hhhhHHHHhhhcCCCHHHHHHHhh--cCCCCCHHHHHHHHhhCCChHHHHhhhhccCCCCCCChhhHHHHHHHhcCCCHH
Q 043000 396 KSQNTAIVLKSLALSRGELLSAIL--DGKELNPETLEKLTRVAPTKEEQSKILDFDGDPTRLADAESFHYHILKAVPSAY 473 (634)
Q Consensus 396 RaqNiaI~L~~L~~s~eei~~aLl--d~~~L~~e~Le~Llk~~Pt~EE~~~L~~y~gd~~~L~~aE~Fl~~Llk~IP~~~ 473 (634)
|+|||+|+|++|+++.++|++||+ |...|+.|.|+.|++++||.||+..|++|.++...|+++|+|+++|+ .||++.
T Consensus 80 r~~ni~I~L~~~~~~~~~l~~ai~~~d~~~l~~e~l~~L~~~~Pt~eE~~~l~~~~~~~~~L~~~E~f~~~l~-~ip~~~ 158 (370)
T PF02181_consen 80 RSQNIGIVLKKFKLSPEELIQAILNLDEEVLTEELLENLLKILPTPEEIEALKAYKGDPATLGPAEQFLLELS-KIPRLK 158 (370)
T ss_dssp HHHHHHHHHHHHTS-HHHHHHHHHTTTTCCCTHHHHHHHHHHCGGHHHHHHHHCTCTSGTTB-HHHHHHHHHT-TSTTHH
T ss_pred HHHHHHHHhhccCCCHHHHHHHHHccCccccchHHHHHHHhcCCCchHHHHHHHHhccHHhhccHHHHHHHHH-HHHHHH
Confidence 999999999999999999999997 45679999999999999999999999999999999999999999998 599999
Q ss_pred HHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccccccCCCCCCeeeeecccccccccccCCC
Q 043000 474 TRLNALLFRSNYDSEIAQFKETLQTLELGCKELRTRGLLLKLLEAILKAGNRMNAGTARGNAQAFNLTALRKLSDVKSTD 553 (634)
Q Consensus 474 ~RL~amlf~~~f~~ev~~l~~~l~~l~~Ac~eLr~S~~f~kLLe~VL~iGN~mN~Gt~RG~A~GFkL~sL~KL~dvKs~d 553 (634)
+||+||+|+.+|+++++++.+.|.++..||++|++|..|++||++||++|||||.|+.||+|+||+|++|.||.+||++|
T Consensus 159 ~rl~~~~~~~~f~~~~~~l~~~l~~l~~a~~~l~~S~~l~~lL~~iL~~GN~lN~g~~~g~A~GF~L~sL~kL~~~Ks~d 238 (370)
T PF02181_consen 159 ERLEALLFKSEFEEQLEELKEKLEKLEAACEELRESKSLRRLLEIILAIGNFLNGGTPRGNAKGFKLSSLSKLKDTKSND 238 (370)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHSTCSTTCS-SEE-GGGGGGCCCSB-ST
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhccCCCccccceecHHhHHHHHhccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccHHHHHHHHHHHhhCchhhhcccccccCC
Q 043000 554 GKTTLLHFVVEEVVRAEGRRCVINRNRSLSRS 585 (634)
Q Consensus 554 ~ktTLLhfvve~i~rsEg~~~~l~~~~~l~~~ 585 (634)
+++|||||||+.+.+. ...++.+.+++...
T Consensus 239 ~~~tLL~~l~~~~~~~--~~~~~~~~~eL~~v 268 (370)
T PF02181_consen 239 NKTTLLHYLVKIVEEK--FPDLLDLEDELSSV 268 (370)
T ss_dssp TTSBHHHHHHHHHHTT--SGGGGGHHHHTTTH
T ss_pred CCchHHHHHHHHHHhc--ChHHhccHHHHhhH
Confidence 9999999999999864 44666666777643
No 4
>KOG1922 consensus Rho GTPase effector BNI1 and related formins [Signal transduction mechanisms; Cytoskeleton]
Probab=100.00 E-value=2.8e-44 Score=423.39 Aligned_cols=285 Identities=47% Similarity=0.709 Sum_probs=256.1
Q ss_pred CCCCcCCcccccccCCccccccccccccCCCCcccch---hHHHHhhhhccccCCCCcccc-CCCCCCCCCCceeecChh
Q 043000 320 GNGHVKLKPLHWDKVNKNVEHSMVWDKIDGGSFRFDG---DLMEALFGYVATNRRSPTRER-NSKNSTGPNSQVILLDAR 395 (634)
Q Consensus 320 ~~p~~KlK~LhW~Kv~~~~~k~TVW~ki~~~s~~~De---e~lE~lF~~~~~~~~s~~~~~-~~~~~~~~~~~i~iLD~K 395 (634)
..++.++|++||+++..+..+.++|+++..+++.+|. +++|.+|++............ .........+.++++|++
T Consensus 390 ~~p~~~lk~l~wdk~~~~~~~~~~w~~~~~~~~~~~~~~~~~~e~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~r 469 (833)
T KOG1922|consen 390 AQPKNKLKPLHWDKTRGSSKRSMVWSEVDSSSSLFDPPLSELMEALFGLVKFLPSDNGGDTGREEKTAVEKKRLKVLDPR 469 (833)
T ss_pred CCCCCCCCCccccccCCCCccCCCCCccccCCcCCCCCcccccccchhhhhcccCCCCCCCccccccccccccccccCCC
Confidence 4578999999999999999999999999999999998 999999987654322221000 000111123568999999
Q ss_pred hhhhHHHHhhhcCCCHHHHHHHhhcCCC--CCHHHHHHHHhhCCChHHHHhhhhccCCCCCCChhhHHHHHHHhcCCCHH
Q 043000 396 KSQNTAIVLKSLALSRGELLSAILDGKE--LNPETLEKLTRVAPTKEEQSKILDFDGDPTRLADAESFHYHILKAVPSAY 473 (634)
Q Consensus 396 RaqNiaI~L~~L~~s~eei~~aLld~~~--L~~e~Le~Llk~~Pt~EE~~~L~~y~gd~~~L~~aE~Fl~~Llk~IP~~~ 473 (634)
+.||++|+|++|+++.++++++|++++. ++.++|++|.+++|+++|..+++.|.++...|+.+|+|+.+.+..||+++
T Consensus 470 ~~~n~~ill~sl~~~~~~~~~a~~~~~~~~~~~~~l~~l~~~~pt~~E~~~l~~~~~~~~~l~~~e~~~~~~~~~ip~~~ 549 (833)
T KOG1922|consen 470 RPQNIAILLSSLNMPTEDIPQALLELDDSVLGLDQLEKLLKFAPTKEEETKLKEESGDPLTLGDAEKFFFEELSGIPEFE 549 (833)
T ss_pred CccceeeehhhcCCchHHHHHHHhccCccccCHHHHHHHHccCCChhHHHHHHhhcCCCCccchHHHHHHHHhhcchHHH
Confidence 9999999999999999999999997665 99999999999999999999999999999999999999999777899999
Q ss_pred HHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccccccCCCCCCeeeeecccccccccccCCC
Q 043000 474 TRLNALLFRSNYDSEIAQFKETLQTLELGCKELRTRGLLLKLLEAILKAGNRMNAGTARGNAQAFNLTALRKLSDVKSTD 553 (634)
Q Consensus 474 ~RL~amlf~~~f~~ev~~l~~~l~~l~~Ac~eLr~S~~f~kLLe~VL~iGN~mN~Gt~RG~A~GFkL~sL~KL~dvKs~d 553 (634)
.|+++++|+..|..++.++...+.+++.||++|++++.|.++|++||.+|||||.|+.||+|+||+|++|.||.|+|+.+
T Consensus 550 ~~~~~~~f~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~~~~~~e~il~~Gn~mN~g~~rg~a~~f~l~~l~kl~d~ks~~ 629 (833)
T KOG1922|consen 550 ERLQALSFRSKFSEEVTALKKKLETVEVASKELLESKKFLKILEIILAAGNRMNAGTNRGSAHGFKLDALLKLSDVKSSD 629 (833)
T ss_pred HHHHHhhhhhhccchHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcccccccccccccchhhHHHHhhhhhhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccHHHHHHHHHHHhhCchhhhcccccccCCCCCCCCCCCCCCCCCCCChhHHHHHHHhcCcchhcccchhhhhhhhhc
Q 043000 554 GKTTLLHFVVEEVVRAEGRRCVINRNRSLSRSGSSRNSSSGSLTSENSTPKEEKEKEYMRLGLPVIGGLSAEFSNVKKAA 633 (634)
Q Consensus 554 ~ktTLLhfvve~i~rsEg~~~~l~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~y~~~gl~~v~~l~~el~~vkkaa 633 (634)
+++++|||++.++.+++|.+.+. .++.|+++|+++|.+|..||.||++||
T Consensus 630 ~~~~~l~~~~~e~~~~~~~r~~~------------------------------~~~~~~~~~~~~~~~~~~~l~~v~~aa 679 (833)
T KOG1922|consen 630 GKTTLLHFVVPEVVRSEGKRSVI------------------------------DVEKSRRLGLPSLLKFLSDLSNVESAA 679 (833)
T ss_pred ccchhhhhhHHHHHHhhccccch------------------------------hhhhhhhccchhhhcccchhcccchhh
Confidence 99999999999999999977542 467899999999999999999999998
Q ss_pred C
Q 043000 634 T 634 (634)
Q Consensus 634 ~ 634 (634)
.
T Consensus 680 ~ 680 (833)
T KOG1922|consen 680 K 680 (833)
T ss_pred c
Confidence 4
No 5
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=100.00 E-value=8.4e-38 Score=346.44 Aligned_cols=261 Identities=25% Similarity=0.351 Sum_probs=221.4
Q ss_pred CCCCCCCcCCcccccccCCccccccccccccCCCCc--ccchhHHHHhhhhccccCCC-CccccCCCCCCCCCCceeecC
Q 043000 317 TGNGNGHVKLKPLHWDKVNKNVEHSMVWDKIDGGSF--RFDGDLMEALFGYVATNRRS-PTRERNSKNSTGPNSQVILLD 393 (634)
Q Consensus 317 ~~~~~p~~KlK~LhW~Kv~~~~~k~TVW~ki~~~s~--~~Dee~lE~lF~~~~~~~~s-~~~~~~~~~~~~~~~~i~iLD 393 (634)
+.....+.++-.++|..+.....++|+++++++..+ .+|.+++|+.|.....+... ...........+...+++++|
T Consensus 362 k~~~~tk~~~p~lnW~alKP~qv~~tvf~~~~De~Il~~lD~~~~ee~Fk~~~s~~~~~~e~~a~~~~~~ka~qk~tLle 441 (830)
T KOG1923|consen 362 KKPTPTKTKSPSLNWLALKPIQVKGTVFHELNDEKILEALDFSRFEEQFKILKSNGQILDESSAVSKAMTKAPQKRTLLE 441 (830)
T ss_pred cCCCcccccCCCccccccCccccccchhhhhhHHHHHHhhhHHHHHHHHHhhhcccchhhhHHHHHHHhhhhhhhhhHHH
Confidence 445556788888999999888889999999988665 57999999999762211110 011111111233467789999
Q ss_pred hhhhhhHHHHhhhcCCCHHHHHHHh--hcCCCCCHHHHHHHHhhCCChHHHHhhhhccCC---CCCCChhhHHHHHHHhc
Q 043000 394 ARKSQNTAIVLKSLALSRGELLSAI--LDGKELNPETLEKLTRVAPTKEEQSKILDFDGD---PTRLADAESFHYHILKA 468 (634)
Q Consensus 394 ~KRaqNiaI~L~~L~~s~eei~~aL--ld~~~L~~e~Le~Llk~~Pt~EE~~~L~~y~gd---~~~L~~aE~Fl~~Llk~ 468 (634)
.+|.+|++|.++ +++..++|+.|| +|...|..+.++.|.+++||++|...+++|..+ ...|++.++|++.+. .
T Consensus 442 ~~R~~nlaiT~R-~~~~~~~V~~Aih~~dLk~L~~~~ve~L~r~lPTe~E~kl~~~~~~e~~pme~Ls~edkFml~ls-k 519 (830)
T KOG1923|consen 442 QRRLFNLAITRR-VQMKAKEVMAAIHPLDLKALSLEPVELLQRILPTEAEVKLLREYERERSPMENLSEEDKFMLSLS-K 519 (830)
T ss_pred HHHHHHHHHHhh-hcCchHHHHHHhhhccccccCCcHHHHHHhcCCchHHHHHHHHhhhhcCchhhcccchhhhhhhh-h
Confidence 999999999999 999999999999 488899999999999999999999999999754 368999999999986 6
Q ss_pred CCCHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccccccCCCCCCeeeeeccccccccc
Q 043000 469 VPSAYTRLNALLFRSNYDSEIAQFKETLQTLELGCKELRTRGLLLKLLEAILKAGNRMNAGTARGNAQAFNLTALRKLSD 548 (634)
Q Consensus 469 IP~~~~RL~amlf~~~f~~ev~~l~~~l~~l~~Ac~eLr~S~~f~kLLe~VL~iGN~mN~Gt~RG~A~GFkL~sL~KL~d 548 (634)
|.++.+||..|-|+.+|.+.+.-+.+.+..++.|+..+++|++|+.+|++||++|||||.+ .||.|+||+|.+|.-|.+
T Consensus 520 IErle~klatM~~m~nF~dsv~ll~pq~~si~aAS~s~k~sr~lr~VleiILA~gNymns~-kRg~ayGFklqslD~ll~ 598 (830)
T KOG1923|consen 520 IERLEEKLATMEFMGNFPDSVQLLAPQLISIIAASKSLKESRKLRPVLEIILAFGNYMNSS-KRGAAYGFKLQSLDSLLD 598 (830)
T ss_pred hhhhHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHhhccCCCc-ccccccceeccccHHHhh
Confidence 9999999999999999999999999999999999999999999999999999999999999 689999999999999999
Q ss_pred ccCCCCCccHHHHHHHHHHHhhCchhhhcccccc
Q 043000 549 VKSTDGKTTLLHFVVEEVVRAEGRRCVINRNRSL 582 (634)
Q Consensus 549 vKs~d~ktTLLhfvve~i~rsEg~~~~l~~~~~l 582 (634)
+|++|.+.|||||++-.|.. -...+.+|-+++
T Consensus 599 tkStDr~~tLlh~iv~~i~e--klp~l~~F~~el 630 (830)
T KOG1923|consen 599 TKSTDRSMTLLHYIVLTIAE--KLPALQLFFSEL 630 (830)
T ss_pred ccCCccceeeeehhhHHHHH--hhHHHHhhHHHh
Confidence 99999999999999999874 344554444333
No 6
>KOG1925 consensus Rac1 GTPase effector FHOS [Signal transduction mechanisms; Cytoskeleton]
Probab=100.00 E-value=4.7e-32 Score=288.15 Aligned_cols=235 Identities=28% Similarity=0.425 Sum_probs=198.1
Q ss_pred cCCcccccccCC--------ccccccccccccCCCCcccchhHHHHhhhhccccCCCCccccCCCCCCCCCCceeecChh
Q 043000 324 VKLKPLHWDKVN--------KNVEHSMVWDKIDGGSFRFDGDLMEALFGYVATNRRSPTRERNSKNSTGPNSQVILLDAR 395 (634)
Q Consensus 324 ~KlK~LhW~Kv~--------~~~~k~TVW~ki~~~s~~~Dee~lE~lF~~~~~~~~s~~~~~~~~~~~~~~~~i~iLD~K 395 (634)
.+.-+|||..+. .....+|+|+.++..+ ||...||.||..++... .+.++ ....+.+..+|||.|
T Consensus 282 r~~~KL~Wr~~~~~~~~Gv~~~r~~~t~W~s~D~~~--~D~~r~~~LFEsr~~~~-~P~KK----~~E~r~~~~tVL~~K 354 (817)
T KOG1925|consen 282 RKTVKLFWRDVKLAGGHGVSASRPCATLWASLDPVS--VDTARLEHLFESRAKEV-LPSKK----AGEGRRTMTTVLDPK 354 (817)
T ss_pred CceeEEEeecceecCCCCCccccccchhhhccCcce--ecHHHHHHHHHHhhhhh-ccchh----hcccceeeeeecCcc
Confidence 344458998763 2345779999999855 79999999998654321 11111 123355667999999
Q ss_pred hhhhHHHHhhhcCCCHHHHHHHhh--cCCCCCHHHHHHHHhhCCChHHHHhhhhcc-CCC-CCCChhhHHHHHHHhcCCC
Q 043000 396 KSQNTAIVLKSLALSRGELLSAIL--DGKELNPETLEKLTRVAPTKEEQSKILDFD-GDP-TRLADAESFHYHILKAVPS 471 (634)
Q Consensus 396 RaqNiaI~L~~L~~s~eei~~aLl--d~~~L~~e~Le~Llk~~Pt~EE~~~L~~y~-gd~-~~L~~aE~Fl~~Llk~IP~ 471 (634)
|+|.|.|-|..|. +..-|..||+ |.-.++.|.||+|++|+||+||+++|+.-. .++ ..|+.|||||+.|. .|+.
T Consensus 355 Rt~AINIGLT~LP-Pv~VI~AA~~~FD~~~~~KDGIEK~L~MmPt~eE~qkIe~aqlaNPEipLG~AEQfLLtLS-sI~~ 432 (817)
T KOG1925|consen 355 RTNAINIGLTTLP-PVHVIKAALLNFDEFAVSKDGIEKLLTMMPTEEERQKIEGAQLANPEIPLGPAEQFLLTLS-SIGG 432 (817)
T ss_pred cccceeeccccCC-chhhhHHHHhcchhhhcchhhHHHHHHhCCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHh-hhHH
Confidence 9999999999885 3455778887 455789999999999999999999998653 344 58999999999996 8999
Q ss_pred HHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccccccCCCCCCeeeeecccccccccccC
Q 043000 472 AYTRLNALLFRSNYDSEIAQFKETLQTLELGCKELRTRGLLLKLLEAILKAGNRMNAGTARGNAQAFNLTALRKLSDVKS 551 (634)
Q Consensus 472 ~~~RL~amlf~~~f~~ev~~l~~~l~~l~~Ac~eLr~S~~f~kLLe~VL~iGN~mN~Gt~RG~A~GFkL~sL~KL~dvKs 551 (634)
+.+||+.|+|+..|+..-.+|.+.|-.+..|+++|.+++.|+-+|..+|+||||||+. +++||.|+.|.|..+||+
T Consensus 433 L~aRL~LWaFklDY~~~EKeiAEPL~Dlk~gm~qlE~n~Tf~~il~tLLAIGNfLnGT----~~KgFeLsYLeKvsEVKD 508 (817)
T KOG1925|consen 433 LAARLQLWAFKLDYDSMEKEIAEPLFDLKVGMEQLEQNATFRCILATLLAIGNFLNGT----QSKGFELSYLEKVSEVKD 508 (817)
T ss_pred HHHHHHHHhhhcccchhhHHhhhHHHHHHHHHHHHHhcchHHHHHHHHHHHhccccCc----cccceehHhhhhchhhcc
Confidence 9999999999999999999999999999999999999999999999999999999965 689999999999999999
Q ss_pred CCCCccHHHHHHHHHHHhhC
Q 043000 552 TDGKTTLLHFVVEEVVRAEG 571 (634)
Q Consensus 552 ~d~ktTLLhfvve~i~rsEg 571 (634)
+..|.||||+||+.++....
T Consensus 509 tV~KqsLlhHlc~~vVE~Fp 528 (817)
T KOG1925|consen 509 TVRKQSLLHHLCSLVVETFP 528 (817)
T ss_pred hHHHHHHHHHHHHHHHHhCC
Confidence 99999999999999996544
No 7
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=99.91 E-value=1.3e-24 Score=240.87 Aligned_cols=235 Identities=22% Similarity=0.253 Sum_probs=179.9
Q ss_pred ccccccccccccCCCC-----c--ccchhHHH--HhhhhccccCCCCccccCCCCCCCCCCceeecChhhhhhHHHHhhh
Q 043000 336 KNVEHSMVWDKIDGGS-----F--RFDGDLME--ALFGYVATNRRSPTRERNSKNSTGPNSQVILLDARKSQNTAIVLKS 406 (634)
Q Consensus 336 ~~~~k~TVW~ki~~~s-----~--~~Dee~lE--~lF~~~~~~~~s~~~~~~~~~~~~~~~~i~iLD~KRaqNiaI~L~~ 406 (634)
+...++-.|.+|...+ | ++++|.+| ++|+.-+. +.+.+.+. .+...-...|+.-
T Consensus 623 e~~Mrr~nW~kI~p~d~s~~cFWvkv~Edk~en~dlfakL~~-~Fatq~k~--------~k~~e~~eekkt~-------- 685 (1102)
T KOG1924|consen 623 EVPMRRFNWSKIVPRDLSENCFWVKVNEDKLENDDLFAKLAL-KFATQPKV--------KKEQEGGEEKKTG-------- 685 (1102)
T ss_pred CCccccCCccccCccccCccceeeecchhhccchHHHHHHHH-Hhhccccc--------cccccccccccch--------
Confidence 3467888899987643 3 67899998 68876442 22222111 1111112222221
Q ss_pred cCCCHHHHHHHhhcCCCCCHHHHHHHHhh-----CCChHHHHhhhhccCCCCCCChhhHHHHHHHhcCCCHHHHHHHHHh
Q 043000 407 LALSRGELLSAILDGKELNPETLEKLTRV-----APTKEEQSKILDFDGDPTRLADAESFHYHILKAVPSAYTRLNALLF 481 (634)
Q Consensus 407 L~~s~eei~~aLld~~~L~~e~Le~Llk~-----~Pt~EE~~~L~~y~gd~~~L~~aE~Fl~~Llk~IP~~~~RL~amlf 481 (634)
..+.+.+...||..++++|..| +|++|....|.+.++|.. +|.|+.+|++.+|.-++ |+.
T Consensus 686 -------~kKk~kel~ilDsKtaQnLsIflgS~rmpyeeik~~ILevne~vL----se~~iqnLik~lPe~E~-l~~--- 750 (1102)
T KOG1924|consen 686 -------TKKKVKELRILDSKTAQNLSIFLGSFRMPYEEIKNVILEVNEDVL----SESMIQNLIKHLPEQEQ-LNK--- 750 (1102)
T ss_pred -------hhhhhhhheecchHHHHHHHHHHhhccCCHHHHHHHHhhccHHHH----HHHHHHHHHHhCCCHHH-HHH---
Confidence 2344556788999999999766 489999999999988876 89999999999995433 332
Q ss_pred hhchHHHHHHHHH--HHHHHHHHHHHHHhhhHHHHHHHHHHhhccccccCCCCCCeeeeecccccccccccCCCCCccHH
Q 043000 482 RSNYDSEIAQFKE--TLQTLELGCKELRTRGLLLKLLEAILKAGNRMNAGTARGNAQAFNLTALRKLSDVKSTDGKTTLL 559 (634)
Q Consensus 482 ~~~f~~ev~~l~~--~l~~l~~Ac~eLr~S~~f~kLLe~VL~iGN~mN~Gt~RG~A~GFkL~sL~KL~dvKs~d~ktTLL 559 (634)
...+..+++++.+ +|.+++..++.|+ .|.++.-|||.+-..+.++|.....+|.
T Consensus 751 L~e~Kaeye~l~e~EQF~vvm~~vkrL~-----------------------pRL~~ilFKl~fse~vnniKP~i~avt~- 806 (1102)
T KOG1924|consen 751 LSELKAEYEDLPEPEQFVVVMSQVKRLR-----------------------PRLSAILFKLTFSEQVNNIKPDIVAVTA- 806 (1102)
T ss_pred HHHHHHhccCCCCHHHHhHHHhhccccC-----------------------hhHHHHHHHhhHHHHHhhcChHHHHHHH-
Confidence 2344555565554 4777777777776 7888999999999999999999887777
Q ss_pred HHHHHHHHHhhCchhhhc---ccccccCCCCCCCCCCCCCCC----------------CCCCChhHHHHHHHhcCcchhc
Q 043000 560 HFVVEEVVRAEGRRCVIN---RNRSLSRSGSSRNSSSGSLTS----------------ENSTPKEEKEKEYMRLGLPVIG 620 (634)
Q Consensus 560 hfvve~i~rsEg~~~~l~---~~~~l~~~~s~~~~~~~~~~~----------------~~~~~~~~~~~~y~~~gl~~v~ 620 (634)
.||+|.+||+++.+|+ +.++||++||+|++++||+++ ++|+.+|.||+.|++ +.
T Consensus 807 --ACEE~rkSesFs~lLeLvLl~GNyMn~gSrNa~afgF~is~L~kL~dTKsaDqk~TLLHfLae~~e~kypd-----~l 879 (1102)
T KOG1924|consen 807 --ACEELRKSESFSKLLELVLLVGNYMNSGSRNAQAFGFNISFLCKLRDTKSADQKTTLLHFLAEICEEKYPD-----IL 879 (1102)
T ss_pred --HHHHHHhhhhHHHHHHHHHHHhcccccccccchhhccchHHHHhhccccccchhhHHHHHHHHHHHHhChh-----hh
Confidence 8999999999998888 789999999999999999887 678999999999999 99
Q ss_pred ccchhhhhhhhhc
Q 043000 621 GLSAEFSNVKKAA 633 (634)
Q Consensus 621 ~l~~el~~vkkaa 633 (634)
+|.+||.||.||+
T Consensus 880 ~F~ddl~hv~kaS 892 (1102)
T KOG1924|consen 880 KFPDDLEHVEKAS 892 (1102)
T ss_pred cchhhHHHHHhhc
Confidence 9999999999997
No 8
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=96.63 E-value=0.16 Score=59.16 Aligned_cols=31 Identities=13% Similarity=-0.059 Sum_probs=23.4
Q ss_pred CCCCChhHHHHHHHhcCcchhcccchhhhhhhhhcC
Q 043000 599 ENSTPKEEKEKEYMRLGLPVIGGLSAEFSNVKKAAT 634 (634)
Q Consensus 599 ~~~~~~~~~~~~y~~~gl~~v~~l~~el~~vkkaa~ 634 (634)
++|...-..++.|.. +..|.+||.=|.||+.
T Consensus 608 Llh~iv~~i~eklp~-----l~~F~~el~~~eKa~a 638 (830)
T KOG1923|consen 608 LLHYIVLTIAEKLPA-----LQLFFSELDFVEKATA 638 (830)
T ss_pred eeehhhHHHHHhhHH-----HHhhHHHhhccchhhh
Confidence 455555556667777 8899999999999873
No 9
>smart00498 FH2 Formin Homology 2 Domain. FH proteins control rearrangements of the actin cytoskeleton, especially in the context of cytokinesis and cell polarisation. Members of this family have been found to interact with Rho-GTPases, profilin and other actin-assoziated proteins. These interactions are mediated by the proline-rich FH1 domain, usually located in front of FH2 (but not listed in SMART). Despite this cytosolic function, vertebrate formins have been assigned functions within the nucleus. A set of Formin-Binding Proteins (FBPs) has been shown to bind FH1 with their WW domain.
Probab=94.62 E-value=0.011 Score=65.90 Aligned_cols=95 Identities=20% Similarity=0.174 Sum_probs=73.0
Q ss_pred CCCCeeeeecccccccccccCCCCCccHHHHHHHHHHHhhCchhhhc---ccccccCCCCCCCCCCCCCCC---------
Q 043000 531 ARGNAQAFNLTALRKLSDVKSTDGKTTLLHFVVEEVVRAEGRRCVIN---RNRSLSRSGSSRNSSSGSLTS--------- 598 (634)
Q Consensus 531 ~RG~A~GFkL~sL~KL~dvKs~d~ktTLLhfvve~i~rsEg~~~~l~---~~~~l~~~~s~~~~~~~~~~~--------- 598 (634)
.|-.+.-|++++-..+.+++.. ...|.-.|++|..|..++.+|. ..+++++.|+.+.++.||.++
T Consensus 161 ~Rl~~~~f~~~f~~~~~~l~~~---l~~l~~a~~~l~~S~~l~~lL~~iL~~GN~mN~g~~rg~A~GFkL~sL~KL~d~K 237 (432)
T smart00498 161 ERLNALLFKANFEEEVEDLKPQ---LEKVEAACEELRESKKFRKLLELILAIGNYMNSGSRRGQAYGFKLSSLLKLSDVK 237 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHcCHHHHHHHHHHHHHhCcccCCCcCCCcceeeHHHHHHHHhhh
Confidence 3455666777777777776653 4567778999999998888877 469999999887788886655
Q ss_pred -------CCCCChhHHHHHHHhcCcchhcccchhhhhhhhhc
Q 043000 599 -------ENSTPKEEKEKEYMRLGLPVIGGLSAEFSNVKKAA 633 (634)
Q Consensus 599 -------~~~~~~~~~~~~y~~~gl~~v~~l~~el~~vkkaa 633 (634)
+.|+..+.+++.|.. +..|.+||.+|.+|+
T Consensus 238 s~d~k~tLLhylv~~i~~~~p~-----~~~f~~el~~v~~as 274 (432)
T smart00498 238 SADNKTTLLHFLVKIIRKKYPD-----LLDFYSDLHHLDKAK 274 (432)
T ss_pred ccCCCccHHHHHHHHHHHhChh-----hccchhhhccHHHHH
Confidence 456666677777877 788999999999986
No 10
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=94.28 E-value=0.29 Score=54.67 Aligned_cols=9 Identities=11% Similarity=0.228 Sum_probs=4.2
Q ss_pred ccccccccC
Q 043000 340 HSMVWDKID 348 (634)
Q Consensus 340 k~TVW~ki~ 348 (634)
++-+-++|+
T Consensus 495 R~~LmaqIR 503 (569)
T KOG3671|consen 495 RDALMAQIR 503 (569)
T ss_pred HHHHHHHHH
Confidence 344444554
No 11
>PHA03247 large tegument protein UL36; Provisional
Probab=92.74 E-value=1.3 Score=58.08 Aligned_cols=13 Identities=31% Similarity=0.654 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHH
Q 043000 495 TLQTLELGCKELR 507 (634)
Q Consensus 495 ~l~~l~~Ac~eLr 507 (634)
.|..|..||..|+
T Consensus 3110 alAlLi~ACr~i~ 3122 (3151)
T PHA03247 3110 ALAVLIEACRRIR 3122 (3151)
T ss_pred HHHHHHHHHHHHH
Confidence 4566666666654
No 12
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=91.77 E-value=1.2 Score=50.02 Aligned_cols=7 Identities=14% Similarity=0.268 Sum_probs=2.9
Q ss_pred HHHHHHh
Q 043000 108 LQRYVLR 114 (634)
Q Consensus 108 ~~~~~~~ 114 (634)
|.|++.+
T Consensus 131 F~k~V~~ 137 (569)
T KOG3671|consen 131 FRKKVQD 137 (569)
T ss_pred HHHHHHH
Confidence 4444443
No 13
>PHA03247 large tegument protein UL36; Provisional
Probab=90.64 E-value=1.4 Score=57.66 Aligned_cols=9 Identities=11% Similarity=0.309 Sum_probs=4.4
Q ss_pred ccccccccc
Q 043000 339 EHSMVWDKI 347 (634)
Q Consensus 339 ~k~TVW~ki 347 (634)
.+.+.|-..
T Consensus 3024 l~q~~~~~~ 3032 (3151)
T PHA03247 3024 LKQTLWPPD 3032 (3151)
T ss_pred cccCCCCCC
Confidence 455555433
No 14
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=88.98 E-value=3.5 Score=40.30 Aligned_cols=8 Identities=75% Similarity=1.647 Sum_probs=3.8
Q ss_pred cCchhHHH
Q 043000 5 FQPWLLLL 12 (634)
Q Consensus 5 ~~~~~~~~ 12 (634)
..+|.+|+
T Consensus 11 ~~~~llLl 18 (163)
T PF06679_consen 11 LAPWLLLL 18 (163)
T ss_pred hHHHHHHH
Confidence 34555543
No 15
>PF02181 FH2: Formin Homology 2 Domain; InterPro: IPR015425 Formin homology (FH) proteins play a crucial role in the reorganisation of the actin cytoskeleton, which mediates various functions of the cell cortex including motility, adhesion, and cytokinesis []. Formins are multidomain proteins that interact with diverse signalling molecules and cytoskeletal proteins, although some formins have been assigned functions within the nucleus. Formins are characterised by the presence of three FH domains (FH1, FH2 and FH3), although members of the formin family do not necessarily contain all three domains []. The proline-rich FH1 domain mediates interactions with a variety of proteins, including the actin-binding protein profilin, SH3 (Src homology 3) domain proteins, and WW domain proteins. The FH2 domain is required for the self-association of formin proteins through the ability of FH2 domains to directly bind each other [], and may also act to inhibit actin polymerisation []. The FH3 domain (IPR010472 from INTERPRO) is less well conserved and may be important for determining intracellular localisation of formin family proteins. In addition, some formins can contain a GTPase-binding domain (GBD) (IPR010473 from INTERPRO) required for binding to Rho small GTPases, and a C-terminal conserved Dia-autoregulatory domain (DAD). This entry represents the FH2 domain, which was shown by X-ray crystallography to have an elongated, crescent shape containing three helical subdomains [].; PDB: 1Y64_B 1UX4_A 1UX5_A 3O4X_H 3OBV_E 1V9D_D 2Z6E_B 2J1D_G.
Probab=88.71 E-value=0.61 Score=50.73 Aligned_cols=181 Identities=24% Similarity=0.276 Sum_probs=100.3
Q ss_pred CCCCHHHHHHH----Hhh-CCChHHHHhhhhccCCCCCCChhhHHHHHHHhcCCCHHHHHHHHHhhhchHHHHHHHHHHH
Q 043000 422 KELNPETLEKL----TRV-APTKEEQSKILDFDGDPTRLADAESFHYHILKAVPSAYTRLNALLFRSNYDSEIAQFKETL 496 (634)
Q Consensus 422 ~~L~~e~Le~L----lk~-~Pt~EE~~~L~~y~gd~~~L~~aE~Fl~~Llk~IP~~~~RL~amlf~~~f~~ev~~l~~~l 496 (634)
..||....+++ .++ ++..+-+.+|...+. ..|+ +..+..|++.+|.-.+. ..+ ..|... ...|
T Consensus 74 ~iLd~kr~~ni~I~L~~~~~~~~~l~~ai~~~d~--~~l~--~e~l~~L~~~~Pt~eE~-~~l---~~~~~~----~~~L 141 (370)
T PF02181_consen 74 SILDPKRSQNIGIVLKKFKLSPEELIQAILNLDE--EVLT--EELLENLLKILPTPEEI-EAL---KAYKGD----PATL 141 (370)
T ss_dssp SSS-HHHHHHHHHHHHHHTS-HHHHHHHHHTTTT--CCCT--HHHHHHHHHHCGGHHHH-HHH---HCTCTS----GTTB
T ss_pred cccchHHHHHHHHHhhccCCCHHHHHHHHHccCc--cccc--hHHHHHHHhcCCCchHH-HHH---HHHhcc----HHhh
Confidence 35677666654 334 344555667766544 4444 44455566667775553 221 223222 1233
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHhhccccccCCCCCCeeeeecccccccccccCCCCCccHHHHHHHHHHHhhCchhhh
Q 043000 497 QTLELGCKELRTRGLLLKLLEAILKAGNRMNAGTARGNAQAFNLTALRKLSDVKSTDGKTTLLHFVVEEVVRAEGRRCVI 576 (634)
Q Consensus 497 ~~l~~Ac~eLr~S~~f~kLLe~VL~iGN~mN~Gt~RG~A~GFkL~sL~KL~dvKs~d~ktTLLhfvve~i~rsEg~~~~l 576 (634)
...+.-|-.|..-..|..-|+ +.-|+.++-.++.+++.. ...|.-.|++|..|...+.+|
T Consensus 142 ~~~E~f~~~l~~ip~~~~rl~-----------------~~~~~~~f~~~~~~l~~~---l~~l~~a~~~l~~S~~l~~lL 201 (370)
T PF02181_consen 142 GPAEQFLLELSKIPRLKERLE-----------------ALLFKSEFEEQLEELKEK---LEKLEAACEELRESKSLRRLL 201 (370)
T ss_dssp -HHHHHHHHHTTSTTHHHHHH-----------------HHHHHHTHHHHHHHHHHH---HHHHHHHHHHHHH-HHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHcCchHHHHH
Confidence 333444444443333333333 334555555566665543 455677889999999888877
Q ss_pred c---ccccccCCCCCCCCCCCCCCC-----------CCCCChhHHHHHHHhcCcchhcccchhhhhhhhhcC
Q 043000 577 N---RNRSLSRSGSSRNSSSGSLTS-----------ENSTPKEEKEKEYMRLGLPVIGGLSAEFSNVKKAAT 634 (634)
Q Consensus 577 ~---~~~~l~~~~s~~~~~~~~~~~-----------~~~~~~~~~~~~y~~~gl~~v~~l~~el~~vkkaa~ 634 (634)
. ..+++++.|+...++.||.++ ....+--..-.+|..-+.+-+..+.+||.+|.+|+.
T Consensus 202 ~~iL~~GN~lN~g~~~g~A~GF~L~sL~kL~~~Ks~d~~~tLL~~l~~~~~~~~~~~~~~~~eL~~v~~a~~ 273 (370)
T PF02181_consen 202 EIILAIGNFLNGGTPRGNAKGFKLSSLSKLKDTKSNDNKTTLLHYLVKIVEEKFPDLLDLEDELSSVEKASK 273 (370)
T ss_dssp HHHHHHHHHHSTCSTTCS-SEE-GGGGGGCCCSB-STTTSBHHHHHHHHHHTTSGGGGGHHHHTTTHHHCCT
T ss_pred HHHHHHHHHhccCCCccccceecHHhHHHHHhcccccCCchHHHHHHHHHHhcChHHhccHHHHhhHHhhhh
Confidence 7 568889988877778886655 111122222334444455668889999999999873
No 16
>KOG1922 consensus Rho GTPase effector BNI1 and related formins [Signal transduction mechanisms; Cytoskeleton]
Probab=82.67 E-value=23 Score=43.05 Aligned_cols=78 Identities=18% Similarity=0.140 Sum_probs=44.2
Q ss_pred cccccCCccccccCCCCcccccccccccccccc---CCcccccCCCchhh-hhhhccccccc-ccccccccccCCCCCcc
Q 043000 136 FTRFDGNLRGLIVDENGLDVLYWRKLEEGDKRK---GFDREILHSPRHEE-EKEQGMSINKF-EAVQEVPLLRGKSSSSH 210 (634)
Q Consensus 136 f~~~~~n~~~~iv~eng~dv~y~~~~~e~~~~~---~~~~~~~~~~~~~e-~~~~~~~~~k~-~~~~~~~~~~~~~s~~~ 210 (634)
+...+.++++.....|+++.++|.+........ .+..++.+..+... .........+. ...++++.+++..+...
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 277 (833)
T KOG1922|consen 198 KNTLGDNVKSMSLLKNTLESLLAKKLQRTKISLKLDSESSELLLGDEELLEIAEKETPQNESLPLKEETELLRNLDGRLS 277 (833)
T ss_pred cccccccccccchhhccHHHHHhhhhhhcccccccccccccccccccchhhhhhhhcccccccccccccccccCCCCccc
Confidence 445577888889999999999999777665322 33444444444321 11222222222 45556777777664444
Q ss_pred ccc
Q 043000 211 VKV 213 (634)
Q Consensus 211 ~~~ 213 (634)
...
T Consensus 278 ~~~ 280 (833)
T KOG1922|consen 278 SVS 280 (833)
T ss_pred ccc
Confidence 333
No 17
>KOG1830 consensus Wiskott Aldrich syndrome proteins [Cytoskeleton]
Probab=81.90 E-value=26 Score=39.08 Aligned_cols=8 Identities=13% Similarity=0.218 Sum_probs=4.7
Q ss_pred hHHHHhhh
Q 043000 399 NTAIVLKS 406 (634)
Q Consensus 399 NiaI~L~~ 406 (634)
+.+|++++
T Consensus 489 vatiLsRR 496 (518)
T KOG1830|consen 489 VATILSRR 496 (518)
T ss_pred HHHHHHHH
Confidence 45566666
No 18
>KOG4672 consensus Uncharacterized conserved low complexity protein [Function unknown]
Probab=76.70 E-value=38 Score=37.62 Aligned_cols=12 Identities=8% Similarity=0.398 Sum_probs=7.7
Q ss_pred CCCHHHHHHHhh
Q 043000 408 ALSRGELLSAIL 419 (634)
Q Consensus 408 ~~s~eei~~aLl 419 (634)
+++.+++..++|
T Consensus 469 ~vtkDDaY~~FM 480 (487)
T KOG4672|consen 469 KVTKDDAYNAFM 480 (487)
T ss_pred CCcchHHHHHHH
Confidence 446677777665
No 19
>KOG4025 consensus Putative apoptosis related protein [Function unknown]
Probab=67.25 E-value=19 Score=35.36 Aligned_cols=94 Identities=22% Similarity=0.239 Sum_probs=51.4
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHhhCCCh-HHHHhhhhccCCCCCCChhhHHHHHHHhcCCCHHHHHHHHHhhhchHHHHH
Q 043000 412 GELLSAILDGKELNPETLEKLTRVAPTK-EEQSKILDFDGDPTRLADAESFHYHILKAVPSAYTRLNALLFRSNYDSEIA 490 (634)
Q Consensus 412 eei~~aLld~~~L~~e~Le~Llk~~Pt~-EE~~~L~~y~gd~~~L~~aE~Fl~~Llk~IP~~~~RL~amlf~~~f~~ev~ 490 (634)
-++...|+|...|+...-|.+++|.=+. -+.-.+..|+.|..+|+.--.-|..++..| .+|++
T Consensus 54 yD~~~~il~~~~l~VNl~Es~LRm~~~~d~ney~v~r~E~~fqeLn~ka~aLk~iLSri----------------PdEin 117 (207)
T KOG4025|consen 54 YDFTKVILDDSELSVNLQESYLRMHDTSDTNEYIVSRYEQDFQELNKKAIALKRILSRI----------------PDEIN 117 (207)
T ss_pred HHHHHHHHhhhccccchHHHHHHhhcccchhhHhhcCCCccHHHHHHHHHHHHHHHHhC----------------cHhhh
Confidence 3566677788889999999999998322 222334445555444444444444444333 44555
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccccc
Q 043000 491 QFKETLQTLELGCKELRTRGLLLKLLEAILKAGNRMN 527 (634)
Q Consensus 491 ~l~~~l~~l~~Ac~eLr~S~~f~kLLe~VL~iGN~mN 527 (634)
+=..-|+++..-.. .+++||++|=++|.+.-
T Consensus 118 DR~~FLeTIK~IAS------aIKkLLd~vN~v~~~~p 148 (207)
T KOG4025|consen 118 DRHAFLETIKLIAS------AIKKLLDAVNAVYRIVP 148 (207)
T ss_pred hHHHHHHHHHHHHH------HHHHHHHHHHHHHhhcc
Confidence 44444444433222 23466666666665544
No 20
>KOG4672 consensus Uncharacterized conserved low complexity protein [Function unknown]
Probab=56.89 E-value=83 Score=35.11 Aligned_cols=9 Identities=44% Similarity=0.781 Sum_probs=3.6
Q ss_pred ccccccccc
Q 043000 195 AVQEVPLLR 203 (634)
Q Consensus 195 ~~~~~~~~~ 203 (634)
.|.+++++.
T Consensus 266 ~~~~v~~~~ 274 (487)
T KOG4672|consen 266 NITSVPLLP 274 (487)
T ss_pred ccccccccC
Confidence 333444433
No 21
>PRK15319 AIDA autotransporter-like protein ShdA; Provisional
Probab=53.88 E-value=22 Score=46.28 Aligned_cols=8 Identities=25% Similarity=0.858 Sum_probs=4.8
Q ss_pred ccccccCC
Q 043000 342 MVWDKIDG 349 (634)
Q Consensus 342 TVW~ki~~ 349 (634)
.+|..+..
T Consensus 1763 s~W~Ri~G 1770 (2039)
T PRK15319 1763 SVWARFKA 1770 (2039)
T ss_pred CeEEEEec
Confidence 56766553
No 22
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=46.07 E-value=2e+02 Score=34.71 Aligned_cols=7 Identities=0% Similarity=0.022 Sum_probs=2.8
Q ss_pred cCCCchh
Q 043000 175 LHSPRHE 181 (634)
Q Consensus 175 ~~~~~~~ 181 (634)
+.++..+
T Consensus 516 ~~kLt~d 522 (894)
T KOG0132|consen 516 WEKLTDD 522 (894)
T ss_pred hHhcCHH
Confidence 4444433
No 23
>KOG1830 consensus Wiskott Aldrich syndrome proteins [Cytoskeleton]
Probab=42.37 E-value=1.7e+02 Score=32.94 Aligned_cols=10 Identities=10% Similarity=0.222 Sum_probs=3.8
Q ss_pred CCHHHHHHHH
Q 043000 424 LNPETLEKLT 433 (634)
Q Consensus 424 L~~e~Le~Ll 433 (634)
+..|....|.
T Consensus 485 v~ndvatiLs 494 (518)
T KOG1830|consen 485 VENDVATILS 494 (518)
T ss_pred ccchHHHHHH
Confidence 3333333343
No 24
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=32.88 E-value=2.9e+02 Score=27.22 Aligned_cols=6 Identities=33% Similarity=-0.075 Sum_probs=3.0
Q ss_pred CchhHH
Q 043000 6 QPWLLL 11 (634)
Q Consensus 6 ~~~~~~ 11 (634)
-.|+++
T Consensus 6 ~~~~~~ 11 (163)
T PF06679_consen 6 ALPHLL 11 (163)
T ss_pred cccchh
Confidence 345555
No 25
>KOG1925 consensus Rac1 GTPase effector FHOS [Signal transduction mechanisms; Cytoskeleton]
Probab=32.57 E-value=1.3e+02 Score=34.63 Aligned_cols=17 Identities=12% Similarity=0.333 Sum_probs=10.5
Q ss_pred CCCCCcCCcccccccCC
Q 043000 319 NGNGHVKLKPLHWDKVN 335 (634)
Q Consensus 319 ~~~p~~KlK~LhW~Kv~ 335 (634)
.+.+..+.+.-+|..|.
T Consensus 298 ~Gv~~~r~~~t~W~s~D 314 (817)
T KOG1925|consen 298 HGVSASRPCATLWASLD 314 (817)
T ss_pred CCCccccccchhhhccC
Confidence 33455666677887664
No 26
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=28.61 E-value=1.3e+02 Score=28.92 Aligned_cols=108 Identities=19% Similarity=0.228 Sum_probs=57.6
Q ss_pred CCCHHHHHHHhhcC-------CCCCHHHHHHHHhhCCChHHHHhhhhccCCCCCCChhhHHHHHHHhcCC--CHHHHHHH
Q 043000 408 ALSRGELLSAILDG-------KELNPETLEKLTRVAPTKEEQSKILDFDGDPTRLADAESFHYHILKAVP--SAYTRLNA 478 (634)
Q Consensus 408 ~~s~eei~~aLld~-------~~L~~e~Le~Llk~~Pt~EE~~~L~~y~gd~~~L~~aE~Fl~~Llk~IP--~~~~RL~a 478 (634)
+.-..++.+++++. +..-..+.++|..+.|+-+|+..+...-+++. =...|+|...|-+..- .-..++..
T Consensus 12 G~~~~eLlk~v~~~~~k~~~fk~~l~~L~sTl~~i~P~i~eI~~~~~eld~~~-~ee~e~L~~~L~~g~~LV~k~sk~~r 90 (147)
T PF05659_consen 12 GAVFGELLKAVIDASKKSLSFKSILKRLESTLESIIPIIKEIDKLNVELDRPR-QEEIERLKELLEKGKELVEKCSKVRR 90 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHhhhcCCch-hHHHHHHHHHHHHHHHHHHHhccccH
Confidence 44455666666531 22333455677789999999988776544331 1223444332211100 01123333
Q ss_pred H--HhhhchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 043000 479 L--LFRSNYDSEIAQFKETLQTLELGCKELRTRGLLLKLL 516 (634)
Q Consensus 479 m--lf~~~f~~ev~~l~~~l~~l~~Ac~eLr~S~~f~kLL 516 (634)
| +-+..|...+.++.+++..+...--.+...+..++++
T Consensus 91 ~n~~kk~~y~~Ki~~le~~l~~f~~v~~q~~~~~D~~~l~ 130 (147)
T PF05659_consen 91 WNLYKKPRYARKIEELEESLRRFIQVDLQLHQLRDIKELL 130 (147)
T ss_pred HHHHhhHhHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 3 3456788888899888877766544444444444443
No 27
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=26.61 E-value=22 Score=40.24 Aligned_cols=36 Identities=17% Similarity=0.180 Sum_probs=0.0
Q ss_pred CCccchhhhhhhhhhHHHHHHHHHHHHHHHHHhhhc
Q 043000 82 DNKTIAKAVAATAASTLFIAVLFFFALQRYVLRKRQ 117 (634)
Q Consensus 82 ~~~~i~~~v~~taa~t~~~~~~~f~~~~~~~~~~~~ 117 (634)
.+..+..++.+..+..++|++++|+++.++-++|+.
T Consensus 349 ~~~~~~l~vVlgvavlivVv~viv~vc~~~rrrR~~ 384 (439)
T PF02480_consen 349 SRGAALLGVVLGVAVLIVVVGVIVWVCLRCRRRRRQ 384 (439)
T ss_dssp ------------------------------------
T ss_pred CcccchHHHHHHHHHHHHHHHHHhheeeeehhcccc
Confidence 334444444444455556666666666666433333
No 28
>PF07462 MSP1_C: Merozoite surface protein 1 (MSP1) C-terminus; InterPro: IPR010901 This entry represents the C-terminal region of merozoite surface protein 1 (MSP1), which is found in a number of Plasmodium species. MSP-1 is a 200 kDa protein expressed on the surface of the Plasmodium vivax merozoite. MSP-1 of Plasmodium species is synthesised as a high-molecular-weight precursor and then processed into several fragments. At the time of red cell invasion by the merozoite, only the 19 kDa C-terminal fragment (MSP-119), which contains two epidermal growth factor-like domains, remains on the surface. Antibodies against MSP-119 inhibit merozoite entry into red cells, and immunisation with MSP-119 protects monkeys from challenging infections. Hence, MSP-119 is considered a promising vaccine candidate [].; GO: 0009405 pathogenesis, 0016020 membrane
Probab=24.30 E-value=1e+02 Score=35.63 Aligned_cols=33 Identities=18% Similarity=0.129 Sum_probs=23.7
Q ss_pred CCcccccccCCccccccCCCCcccccccccccccc
Q 043000 132 PSNEFTRFDGNLRGLIVDENGLDVLYWRKLEEGDK 166 (634)
Q Consensus 132 ~~~~f~~~~~n~~~~iv~eng~dv~y~~~~~e~~~ 166 (634)
.++.=..-..||+--+++|. ||+|.+-+++.-+
T Consensus 354 tGeae~~~~e~Iv~~~~nEy--evvYiKpLAg~Yk 386 (574)
T PF07462_consen 354 TGEAENAQPENIVPEGINEY--EVVYIKPLAGMYK 386 (574)
T ss_pred eccccccchhhhhcCcCCcc--ceEEecchHHHHH
Confidence 44433333356777788999 9999999998874
No 29
>PF11916 Vac14_Fig4_bd: Vacuolar protein 14 C-terminal Fig4p binding; InterPro: IPR021841 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 211 to 243 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=24.29 E-value=4.7e+02 Score=26.27 Aligned_cols=115 Identities=15% Similarity=0.213 Sum_probs=61.5
Q ss_pred HHhhhc--CCCHHHHHHHhh----cC--CCCCHHHHHHHHhhCCChHHHHhhhhccCCCCCCChhhHHHHHHHhcC-CCH
Q 043000 402 IVLKSL--ALSRGELLSAIL----DG--KELNPETLEKLTRVAPTKEEQSKILDFDGDPTRLADAESFHYHILKAV-PSA 472 (634)
Q Consensus 402 I~L~~L--~~s~eei~~aLl----d~--~~L~~e~Le~Llk~~Pt~EE~~~L~~y~gd~~~L~~aE~Fl~~Llk~I-P~~ 472 (634)
.++++| .++.|.|...+- .. -.+-...++.|..++=|..|...++..-.+...-++...+|..+.+.+ .+.
T Consensus 11 ~IIRqLC~~L~~E~iy~~la~iL~~~~dl~Fas~mVq~LN~iLLTs~EL~~LR~~Lr~~~~~~~~~~lF~~Ly~sWchNp 90 (182)
T PF11916_consen 11 FIIRQLCVLLNAERIYRTLASILESEEDLEFASMMVQTLNNILLTSPELFDLRKKLRNLDTDEEGQSLFSTLYRSWCHNP 90 (182)
T ss_pred HHHHHHHhhcCHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcchHHHHHHHHHHhccccchHHhHHHHHHHHHHhcCH
Confidence 455555 456777766662 22 246677889999999999998888765332222223445555554322 112
Q ss_pred HHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 043000 473 YTRLNALLFRSNYDSEIAQFKETLQTLELGCKELRTRGLLLKLLE 517 (634)
Q Consensus 473 ~~RL~amlf~~~f~~ev~~l~~~l~~l~~Ac~eLr~S~~f~kLLe 517 (634)
-.=+.-.+...+|+ -...+-..|..++...+-|.+=..|-.+||
T Consensus 91 va~lSLcLl~q~Y~-~A~~li~~~~~~e~~~~~L~qiD~LVqLlE 134 (182)
T PF11916_consen 91 VATLSLCLLAQAYE-HAYNLIQSFAELEVTVDFLVQIDKLVQLLE 134 (182)
T ss_pred HHHHHHHHHHhHHH-HHHHHHHHHHhcCccHHHHHHHHHHHHHHh
Confidence 22222222223332 233444555555555555555555555554
No 30
>PF10112 Halogen_Hydrol: 5-bromo-4-chloroindolyl phosphate hydrolysis protein; InterPro: IPR018770 This entry consists of prokaryotic proteins that mediate the hydrolysis of 5-bromo-4-chloroindolyl phosphate bonds.
Probab=23.13 E-value=2.5e+02 Score=27.87 Aligned_cols=56 Identities=27% Similarity=0.401 Sum_probs=33.1
Q ss_pred ccCCCCCCChhhHHHHHHHhcCCCHHHHHHHHHhhhc-------hHHHHHHHHHHHHHHHHHHHHH
Q 043000 448 FDGDPTRLADAESFHYHILKAVPSAYTRLNALLFRSN-------YDSEIAQFKETLQTLELGCKEL 506 (634)
Q Consensus 448 y~gd~~~L~~aE~Fl~~Llk~IP~~~~RL~amlf~~~-------f~~ev~~l~~~l~~l~~Ac~eL 506 (634)
...++.+|..+++|+..- +|.+.+=++......+ ......+++..|.+|..+.+..
T Consensus 117 v~~~P~~l~~a~~Fl~~y---Lp~~~~l~~kY~~l~~~~~~~~~~~~~l~e~~~~L~~l~~~f~~~ 179 (199)
T PF10112_consen 117 VEKDPERLTQARKFLYYY---LPTAVKLLEKYAELESQPVKSEEIKQSLEEIEETLDTLNQAFEKD 179 (199)
T ss_pred HHHCHHhHHHHHHHHHHH---hhHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 346889999999999864 5676665555443222 1222344455555555555443
No 31
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=23.07 E-value=70 Score=36.21 Aligned_cols=54 Identities=20% Similarity=0.113 Sum_probs=30.5
Q ss_pred hhHHHHHHHHHHhhccccccCCCCCCeeeeecccccccccc----cCCCCCccHHHHHHH
Q 043000 509 RGLLLKLLEAILKAGNRMNAGTARGNAQAFNLTALRKLSDV----KSTDGKTTLLHFVVE 564 (634)
Q Consensus 509 S~~f~kLLe~VL~iGN~mN~Gt~RG~A~GFkL~sL~KL~dv----Ks~d~ktTLLhfvve 564 (634)
|....-++..+|++|||.-..... .+-..=++++||.++ |+.||.+++-|-.+.
T Consensus 326 S~d~~l~t~g~LaigNfaR~D~~c--i~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~ls 383 (604)
T KOG4500|consen 326 SDDSNLITMGSLAIGNFARRDDIC--IQLVQKDFLNKLISCLMQEKDVDGNVERQHACLS 383 (604)
T ss_pred CCchhHHHHHHHHHHhhhccchHH--HHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHH
Confidence 444445566788888886332210 111222457777665 667777777666544
No 32
>KOG1936 consensus Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=22.82 E-value=1.5e+02 Score=33.54 Aligned_cols=82 Identities=12% Similarity=0.174 Sum_probs=57.1
Q ss_pred ChhhhhhHHHHhhhc-CCCHHHHHHHhhcCCCCCHHHHHHHHhhCCChHHHHhhhhccCCCCCCChhhHHHHHHHhcCCC
Q 043000 393 DARKSQNTAIVLKSL-ALSRGELLSAILDGKELNPETLEKLTRVAPTKEEQSKILDFDGDPTRLADAESFHYHILKAVPS 471 (634)
Q Consensus 393 D~KRaqNiaI~L~~L-~~s~eei~~aLld~~~L~~e~Le~Llk~~Pt~EE~~~L~~y~gd~~~L~~aE~Fl~~Llk~IP~ 471 (634)
...+-..|.+.+-+| +++.|+|.+-+...++|+.|..+++..++=-..-...+....+| .+|...+++..++- ++--
T Consensus 231 p~~~frtICSsIDKLdK~pwedVkkEmv~eKGlsee~ad~igeyv~~~g~~eL~e~l~~d-~~l~~n~~a~eal~-dlk~ 308 (518)
T KOG1936|consen 231 PEDKFRTICSSIDKLDKMPWEDVKKEMVFEKGLSEEAADRIGEYVSLKGLDELLEKLIAD-PKLSQNEAAKEALA-DLKQ 308 (518)
T ss_pred CHHHhhhHHHhhhhhhcCCHHHHHHHHHHhcCCCHHHHHHHHHHhhhccHHHHHHHHhcC-CcccccHHHHHHHH-HHHH
Confidence 445566778888888 68999999999888999999999998877544333333444445 56777888776663 4444
Q ss_pred HHHHH
Q 043000 472 AYTRL 476 (634)
Q Consensus 472 ~~~RL 476 (634)
+++=+
T Consensus 309 Lf~y~ 313 (518)
T KOG1936|consen 309 LFEYL 313 (518)
T ss_pred HHHHH
Confidence 44433
No 33
>KOG4552 consensus Vitamin-D-receptor interacting protein complex component [Transcription]
Probab=22.74 E-value=2.8e+02 Score=28.39 Aligned_cols=58 Identities=22% Similarity=0.287 Sum_probs=26.7
Q ss_pred HHHHhhcCCCCCHHHHHHH-----HhhCCChHHHHhhhhccCCCCCCChhhHHHHHHHhcCCCHHHHHHH
Q 043000 414 LLSAILDGKELNPETLEKL-----TRVAPTKEEQSKILDFDGDPTRLADAESFHYHILKAVPSAYTRLNA 478 (634)
Q Consensus 414 i~~aLld~~~L~~e~Le~L-----lk~~Pt~EE~~~L~~y~gd~~~L~~aE~Fl~~Llk~IP~~~~RL~a 478 (634)
+..++-|...+..+++++| .+|+=+-|+...|+-+... -|.| ..|++-.+...+|=+.
T Consensus 13 LL~~~dDlE~i~kelie~l~~~~~qk~l~~gE~v~il~Ll~~k------d~ef-~~llkla~eq~k~e~~ 75 (272)
T KOG4552|consen 13 LLESADDLEHIVKELIETLINRDKQKMLKNGETVNILKLLDSK------DDEF-KTLLKLAPEQQKREQL 75 (272)
T ss_pred HHHHhhHHHHHHHHHHHHHHhhhHHHHHhcchHHHHHHHHHhc------cHHH-HHHHHHhHhHHHHHHH
Confidence 3344434444555556665 2455555555555444321 2333 3344555555554333
No 34
>PHA03373 tegument protein; Provisional
Probab=22.68 E-value=85 Score=32.34 Aligned_cols=92 Identities=21% Similarity=0.194 Sum_probs=49.7
Q ss_pred CCCCCChhhHHHHHHHhcCCCHHHHHHHHHhhhchHHHHHHHHHH--HHHHHHHHHHHHhhhHHHHHHHHH---Hhhccc
Q 043000 451 DPTRLADAESFHYHILKAVPSAYTRLNALLFRSNYDSEIAQFKET--LQTLELGCKELRTRGLLLKLLEAI---LKAGNR 525 (634)
Q Consensus 451 d~~~L~~aE~Fl~~Llk~IP~~~~RL~amlf~~~f~~ev~~l~~~--l~~l~~Ac~eLr~S~~f~kLLe~V---L~iGN~ 525 (634)
|...|.+-..-+.+|++-+|-|++-..-..|...| ++.. =++=.+|+-|.++|+.+.+.|.+| |.+|+|
T Consensus 54 Di~~~~rDtEv~khLL~LLP~Yk~c~~r~~~L~r~------L~~~C~pH~r~AaevEc~KsqrIleaLDVvilKl~vGEF 127 (247)
T PHA03373 54 DIRSLSRDTEVVKHLLQLLPIYKQCKSRYTFLERC------LANGCPPHVRPAAEVECMKSKRILEALDVVILKLLVGEF 127 (247)
T ss_pred HHHHHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHH------HhccCccccccHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 33344444444566777788777622111111111 2211 122245677788888888888755 567876
Q ss_pred cccCCCCCCeeeeecccccccccccCCCCCccHH
Q 043000 526 MNAGTARGNAQAFNLTALRKLSDVKSTDGKTTLL 559 (634)
Q Consensus 526 mN~Gt~RG~A~GFkL~sL~KL~dvKs~d~ktTLL 559 (634)
-=.-+ |+|+.|.+==++|. +||.
T Consensus 128 tmse~----------dsle~LL~KFStDQ-sTLc 150 (247)
T PHA03373 128 TMSET----------DSLNRLLEKFSTDQ-STLC 150 (247)
T ss_pred ccCcc----------hHHHHHHHHhccch-HHHH
Confidence 32221 35777777666775 4553
No 35
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=22.57 E-value=27 Score=26.45 Aligned_cols=9 Identities=44% Similarity=0.516 Sum_probs=3.6
Q ss_pred Cccchhhhh
Q 043000 83 NKTIAKAVA 91 (634)
Q Consensus 83 ~~~i~~~v~ 91 (634)
.+.+++|++
T Consensus 8 ~~~vaIa~~ 16 (40)
T PF08693_consen 8 SNTVAIAVG 16 (40)
T ss_pred CceEEEEEE
Confidence 344444433
No 36
>PF03750 DUF310: Protein of unknown function (DUF310); InterPro: IPR010149 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents the C-terminal domain of a minor family of CRISPR-associated proteins. These proteins are found adjacent to a characteristic short, palindromic repeat cluster termed CRISPR, a probable mobile DNA element.
Probab=20.99 E-value=6.1e+02 Score=23.30 Aligned_cols=16 Identities=25% Similarity=0.212 Sum_probs=12.6
Q ss_pred hhHHHHHHHHHHhhcc
Q 043000 509 RGLLLKLLEAILKAGN 524 (634)
Q Consensus 509 S~~f~kLLe~VL~iGN 524 (634)
=..|.+++|+|+++=-
T Consensus 98 f~~F~~~fEAiVAYhK 113 (119)
T PF03750_consen 98 FERFCKFFEAIVAYHK 113 (119)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4688999999998643
No 37
>PF11215 DUF3010: Protein of unknown function (DUF3010); InterPro: IPR021378 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=20.96 E-value=29 Score=33.11 Aligned_cols=28 Identities=29% Similarity=0.374 Sum_probs=24.2
Q ss_pred hhccccccCCCCCCeeeeeccccccccc
Q 043000 521 KAGNRMNAGTARGNAQAFNLTALRKLSD 548 (634)
Q Consensus 521 ~iGN~mN~Gt~RG~A~GFkL~sL~KL~d 548 (634)
.|-.|+-.|.+.|+|.||||+.+.+|.+
T Consensus 66 vIk~R~~KGKfAGga~~FKmEaaIQL~~ 93 (138)
T PF11215_consen 66 VIKERATKGKFAGGAVGFKMEAAIQLID 93 (138)
T ss_pred EEEecccCCCccCCchhHHHHHHHHhcC
Confidence 4556788899999999999999999983
No 38
>PHA03378 EBNA-3B; Provisional
Probab=20.79 E-value=8.5e+02 Score=29.42 Aligned_cols=98 Identities=17% Similarity=0.291 Sum_probs=0.0
Q ss_pred CCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCC-----------CCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCC
Q 043000 217 NDDLDHIITSKPTTTPAPSALKTIQEKQPPIQQS-----------NVPPPPPPIQNNKSTAAPP-PPPPPPPQPVSAKKN 284 (634)
Q Consensus 217 ~~~~~~~~~p~p~p~ppp~~~~~~~~~p~~pppp-----------~pppppppppp~p~~~~pp-ppppPppPp~p~~~~ 284 (634)
+..+.+..-+..+|..+|.........+.+.+|| ..|-+.+||...|+..-+| ..|-+-.||...+..
T Consensus 694 ~~pP~~aP~p~~pPa~~P~~~qpP~~ap~p~~PPa~tP~~~~~Pa~aP~p~~PPa~aP~~~~~P~~AP~~~~PPa~tPga 773 (991)
T PHA03378 694 MQPPPRAPTPMRPPAAPPGRAQRPAAATGRARPPAAAPGRARPPAAAPGRARPPAAAPGRARPPAAAPGRARPPAAAPGA 773 (991)
T ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCC
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCccCc
Q 043000 285 PAPPPPPTSILKPPSVPKRSSNEGQLKDSS 314 (634)
Q Consensus 285 ppPPppp~~~~~pp~~p~~~~~~~~~~~s~ 314 (634)
+.|-+||..++.+---|.+.++.-.++..+
T Consensus 774 ptP~~pPq~~P~~~Qrp~gaPtP~ppPQ~~ 803 (991)
T PHA03378 774 PTPQPPPQAPPAPQQRPRGAPTPQPPPQAG 803 (991)
T ss_pred CCCCCCCCCCCccccCCCCCCCCCCCCCCC
No 39
>PF06419 COG6: Conserved oligomeric complex COG6; InterPro: IPR010490 COG6 is a component of the conserved oligomeric golgi complex, which is composed of eight different subunits and is required for normal golgi morphology and localisation.
Probab=20.43 E-value=4e+02 Score=31.52 Aligned_cols=117 Identities=22% Similarity=0.225 Sum_probs=66.0
Q ss_pred hhhhhHHHHhhhcCCCHHHHHHHhhcC-CCCCHHHHHHHHhhCCChHHHHhhhhccCCCCCCChhhHHHHHHHhcCCCHH
Q 043000 395 RKSQNTAIVLKSLALSRGELLSAILDG-KELNPETLEKLTRVAPTKEEQSKILDFDGDPTRLADAESFHYHILKAVPSAY 473 (634)
Q Consensus 395 KRaqNiaI~L~~L~~s~eei~~aLld~-~~L~~e~Le~Llk~~Pt~EE~~~L~~y~gd~~~L~~aE~Fl~~Llk~IP~~~ 473 (634)
.|.+-+.-++.+|.++.+|+ ++|..+ ..++.+....|.+.-=-.+++..|........ .-..+..+.+.+-.+.
T Consensus 94 ~k~~ll~~f~~~f~Ls~~E~-~~L~~~~~~v~~~FF~~L~r~~~I~~~c~~LL~~~~~~a----g~~iM~~~~~~~e~a~ 168 (618)
T PF06419_consen 94 LKKKLLDAFLERFTLSEEEE-DALTSGEEPVDDEFFDALDRVQKIHEDCKILLSTENQRA----GLEIMEQMSKYLERAY 168 (618)
T ss_pred HHHHHHHHHHHhCCCCHHHH-HHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCchH----HHHHHHHHHHHHHHHH
Confidence 34456777888889988884 344433 47898888888876555677777765432222 2333444444455678
Q ss_pred HHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHhh-hHHHHHHH
Q 043000 474 TRLNALLFRSNYDSEIAQFKETLQTLELGCKELRTR-GLLLKLLE 517 (634)
Q Consensus 474 ~RL~amlf~~~f~~ev~~l~~~l~~l~~Ac~eLr~S-~~f~kLLe 517 (634)
+||--|+- .+|..--.+-.+....+..|...|++. ..|..+|+
T Consensus 169 erl~~w~q-~e~~~l~~~~~~~~~~l~~al~~L~~rp~lf~~~l~ 212 (618)
T PF06419_consen 169 ERLYRWVQ-RECRSLNLDNPEVSPLLRRALRYLRERPVLFNYCLD 212 (618)
T ss_pred HHHHHHHH-HHHhhhhhcCcccchHHHHHHHHHhcChHHHHHHHH
Confidence 88888873 233222111112244455555555554 33344443
Done!