Query 043000
Match_columns 634
No_of_seqs 385 out of 1506
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 20:43:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043000.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043000hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4eah_A Formin-like protein 3, 100.0 1.4E-53 4.7E-58 462.6 22.4 265 317-585 10-281 (402)
2 2j1d_G DAAM1, disheveled-assoc 100.0 3.3E-53 1.1E-57 469.7 23.6 265 317-585 6-286 (483)
3 3obv_E Protein diaphanous homo 100.0 8.7E-53 3E-57 462.7 19.9 265 318-585 2-275 (457)
4 1ux5_A BNI1 protein; structura 100.0 1.4E-50 4.9E-55 440.4 11.8 253 320-585 3-285 (411)
5 1v9d_A Diaphanous protein homo 100.0 4.4E-46 1.5E-50 395.9 14.9 199 384-585 4-204 (340)
6 1v9d_A Diaphanous protein homo 96.5 0.00091 3.1E-08 70.7 2.2 175 422-633 10-208 (340)
7 2j1d_G DAAM1, disheveled-assoc 95.4 0.0053 1.8E-07 67.8 2.6 176 422-634 91-291 (483)
8 4eah_A Formin-like protein 3, 95.3 0.0016 5.5E-08 70.4 -1.9 178 422-634 85-286 (402)
9 3obv_E Protein diaphanous homo 82.7 1.4 4.9E-05 48.1 6.0 178 420-634 79-280 (457)
10 2k1k_A Ephrin type-A receptor 42.2 14 0.00048 26.5 2.2 25 82-106 9-33 (38)
11 3hyb_A RBCX protein; rubisco, 30.1 67 0.0023 29.8 5.2 57 429-491 47-103 (155)
12 3kpe_A Fusion glycoprotein F0; 24.0 1.2E+02 0.0041 23.1 4.7 43 485-529 2-44 (51)
13 2ks1_B Epidermal growth factor 23.9 41 0.0014 24.9 2.1 8 85-92 12-19 (44)
14 3c4r_A Uncharacterized protein 21.8 84 0.0029 29.1 4.3 28 511-538 115-142 (151)
No 1
>4eah_A Formin-like protein 3, actin, alpha skeletal muscle; ATP binding, cytoskeleton, FMNL3, protein BIN; HET: ATP; 3.40A {Mus musculus}
Probab=100.00 E-value=1.4e-53 Score=462.60 Aligned_cols=265 Identities=26% Similarity=0.350 Sum_probs=228.4
Q ss_pred CCCCCCCcCCcccccccCCccccccccccccCCCCc--ccchhHHHHhhhhccccCCCCccccCCCCCCCCCCceeecCh
Q 043000 317 TGNGNGHVKLKPLHWDKVNKNVEHSMVWDKIDGGSF--RFDGDLMEALFGYVATNRRSPTRERNSKNSTGPNSQVILLDA 394 (634)
Q Consensus 317 ~~~~~p~~KlK~LhW~Kv~~~~~k~TVW~ki~~~s~--~~Dee~lE~lF~~~~~~~~s~~~~~~~~~~~~~~~~i~iLD~ 394 (634)
++...++.+||+|||++|..++.++|||+++++..+ .+|.+.||++|+.+.................++.++++|||+
T Consensus 10 Kk~~~~k~kmk~l~W~kl~~~~i~~Tiw~~~~~~~~~~~ld~~~~E~lF~~k~~~~~~~~~~~k~k~~~k~~~~v~lLd~ 89 (402)
T 4eah_A 10 KKPIKTKFRLPVFNWTALKPNQINGTVFSELDDEKILEDLDLDRFEELFKTKAQGPALDLICSKNKTAQKAASKVTLLEA 89 (402)
T ss_dssp CCCCCCSSCCCCCCCCEECHHHHTTSTTSSCCTTSCSSTTTHHHHHHHSCCCC--------------------CBCSSCH
T ss_pred CCCCCCCCCCCCcCceeCChHhccCccccCCchhhhccccCHHHHHHHHhhcccCCccccchhcccccccCCCceeeCCH
Confidence 455678999999999999988899999999998776 689999999998764321110000000112335577999999
Q ss_pred hhhhhHHHHhhhcCCCHHHHHHHhh--cCCCCCHHHHHHHHhhCCChHHHHhhhhccCC---CCCCChhhHHHHHHHhcC
Q 043000 395 RKSQNTAIVLKSLALSRGELLSAIL--DGKELNPETLEKLTRVAPTKEEQSKILDFDGD---PTRLADAESFHYHILKAV 469 (634)
Q Consensus 395 KRaqNiaI~L~~L~~s~eei~~aLl--d~~~L~~e~Le~Llk~~Pt~EE~~~L~~y~gd---~~~L~~aE~Fl~~Llk~I 469 (634)
||+|||+|+|++|+++.++|++||+ |...|+.|.|+.|++++||+||+..|++|.+| .+.|+++|||+++|+ .|
T Consensus 90 kra~Ni~I~L~~l~~~~~ei~~aI~~~D~~~L~~e~l~~L~~~~Pt~eE~~~l~~~~~~~~~~~~L~~~EqF~~~l~-~i 168 (402)
T 4eah_A 90 NRAKNLAITLRKAGRSAEEICRAIHTFDLQTLPVDFVECLMRFLPTEAEVKLLRQYERERQPLEELAAEDRFMLLFS-KV 168 (402)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHTTSCSCCCHHHHHHHHHTCCCHHHHHHHHHHHHSSCCTTTBCHHHHHHHHHH-HS
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHcCCcccCCHHHHHHHHhcCCCHHHHHHHHHhhccCCchhhccHHHHHHHHHH-cc
Confidence 9999999999999999999999997 55689999999999999999999999999876 478999999999997 69
Q ss_pred CCHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccccccCCCCCCeeeeecccccccccc
Q 043000 470 PSAYTRLNALLFRSNYDSEIAQFKETLQTLELGCKELRTRGLLLKLLEAILKAGNRMNAGTARGNAQAFNLTALRKLSDV 549 (634)
Q Consensus 470 P~~~~RL~amlf~~~f~~ev~~l~~~l~~l~~Ac~eLr~S~~f~kLLe~VL~iGN~mN~Gt~RG~A~GFkL~sL~KL~dv 549 (634)
|++..||+||+|+.+|++++.+|+..+.+|..||++|++|+.|++||++||++|||||+| .||+|+||+|++|.||.||
T Consensus 169 p~~~~Rl~~l~f~~~f~~~~~~l~~~l~~v~~A~~~l~~S~~l~~lL~~iL~~GN~mN~g-~rg~A~GFkL~sL~KL~d~ 247 (402)
T 4eah_A 169 ERLTQRMAGMAFLGNFQDNLQMLTPQLNAIIAASASVKSSQKLKQMLEIILALGNYMNSS-KRGAVYGFKLQSLDLLLDT 247 (402)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCS-SSCCCSCBCGGGGGSSSSS
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhhccCC-CCCccceeeHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999999999999 7999999999999999999
Q ss_pred cCCCCCccHHHHHHHHHHHhhCchhhhcccccccCC
Q 043000 550 KSTDGKTTLLHFVVEEVVRAEGRRCVINRNRSLSRS 585 (634)
Q Consensus 550 Ks~d~ktTLLhfvve~i~rsEg~~~~l~~~~~l~~~ 585 (634)
|++|+++|||||||+.|.+. +..+++|.++|.+.
T Consensus 248 Ks~d~k~TLLh~l~~~~~~~--~p~l~~f~~eL~~v 281 (402)
T 4eah_A 248 KSTDRKMTLLHFIALTVKEK--YPELANFWQELHFV 281 (402)
T ss_dssp BCTTSSSBHHHHHHHHHHHH--CGGGGTCSTTCCSH
T ss_pred cCCCCCccHHHHHHHHHHhh--hHHHHHHhhhhhhH
Confidence 99999999999999999876 45778888887653
No 2
>2j1d_G DAAM1, disheveled-associated activator of morphogenesis; actin assembly, protein binding; 2.55A {Homo sapiens} PDB: 2z6e_A
Probab=100.00 E-value=3.3e-53 Score=469.69 Aligned_cols=265 Identities=29% Similarity=0.474 Sum_probs=228.7
Q ss_pred CCCCCCCcCCcccccccCCccccccccccccCCCCc--ccchhHHHHhhhhccccCCC------CccccCC----CCCCC
Q 043000 317 TGNGNGHVKLKPLHWDKVNKNVEHSMVWDKIDGGSF--RFDGDLMEALFGYVATNRRS------PTRERNS----KNSTG 384 (634)
Q Consensus 317 ~~~~~p~~KlK~LhW~Kv~~~~~k~TVW~ki~~~s~--~~Dee~lE~lF~~~~~~~~s------~~~~~~~----~~~~~ 384 (634)
+....|+.+||+|||+||..+..++|||+++++..+ .+|+++||++|+.+...... .+.+..+ ....+
T Consensus 6 K~~~~P~~klK~l~W~ki~~~~~~~TiW~~~~~~~~~~~ld~~~lE~lF~~~~~~~~~~~~~~~~~k~~~s~~~~~~~~k 85 (483)
T 2j1d_G 6 KSIPQPTNALKSFNWSKLPENKLEGTVWTEIDDTKVFKILDLEDLERTFSAYQRQQDFFVNSNSKQKEADAIDDTLSSKL 85 (483)
T ss_dssp CCCCCCSSCBCCCCCCCCCGGGCSSSGGGGCCGGGHHHHSCHHHHHHHTBSBC---------------------------
T ss_pred CCCCCCCCCCCCcCceECCcccccCCccCcCCchhhccccCHHHHHHHHhhhcccccccccccccccccccccccccccc
Confidence 345578899999999999888889999999987653 58999999999876432210 0000000 01223
Q ss_pred CCCceeecChhhhhhHHHHhhhcCCCHHHHHHHhh--cC-CCCCHHHHHHHHhhCCChHHHHhhhhccCCCCCCChhhHH
Q 043000 385 PNSQVILLDARKSQNTAIVLKSLALSRGELLSAIL--DG-KELNPETLEKLTRVAPTKEEQSKILDFDGDPTRLADAESF 461 (634)
Q Consensus 385 ~~~~i~iLD~KRaqNiaI~L~~L~~s~eei~~aLl--d~-~~L~~e~Le~Llk~~Pt~EE~~~L~~y~gd~~~L~~aE~F 461 (634)
+.+.++|||+||+|||+|+|++|+++.++|++||+ |. ..|+.|.|+.|++++||.||+.+|++|.||.+.|+++|+|
T Consensus 86 k~~~v~lLD~kRaqNi~I~L~~lk~~~~ei~~aIl~~D~~~~L~~e~l~~Ll~~~Pt~eE~~~l~~~~~d~~~L~~aEqF 165 (483)
T 2j1d_G 86 KVKELSVIDGRRAQNCNILLSRLKLSNDEIKRAILTMDEQEDLPKDMLEQLLKFVPEKSDIDLLEEHKHELDRMAKADRF 165 (483)
T ss_dssp --CCBCCSCHHHHHHHHHHHHHHCCCHHHHHHHHHTTSTTCCCCHHHHHHHHHSCCCHHHHHHHHTTTTCGGGBCHHHHH
T ss_pred CCCcceeCCHHHHHHHHHHHhcCCCCHHHHHHHHHccCccccCCHHHHHHHHHhCCCHHHHHHHHHhccChhhcCHHHHH
Confidence 56779999999999999999999999999999997 44 6799999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccccccCCCCCCeeeeecc
Q 043000 462 HYHILKAVPSAYTRLNALLFRSNYDSEIAQFKETLQTLELGCKELRTRGLLLKLLEAILKAGNRMNAGTARGNAQAFNLT 541 (634)
Q Consensus 462 l~~Llk~IP~~~~RL~amlf~~~f~~ev~~l~~~l~~l~~Ac~eLr~S~~f~kLLe~VL~iGN~mN~Gt~RG~A~GFkL~ 541 (634)
+++|+ .||++.+||+||+|+.+|++++.+|+..+.+|..||++|++|+.|++||++||++|||||+| .||+|+||+|+
T Consensus 166 l~~l~-~ip~~~~Rl~~l~f~~~f~~~~~~l~~~l~~l~~A~~el~~S~~l~~lL~~IL~~GN~mN~g-~rg~A~GFkL~ 243 (483)
T 2j1d_G 166 LFEMS-RINHYQQRLQSLYFKKKFAERVAEVKPKVEAIRSGSEEVFRSGALKQLLEVVLAFGNYMNKG-QRGNAYGFKIS 243 (483)
T ss_dssp HHHHH-TSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHSCS-SSCCCSCCCGG
T ss_pred HHHHh-CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhhhccC-CCCCceeeehH
Confidence 99998 79999999999999999999999999999999999999999999999999999999999999 89999999999
Q ss_pred cccccccccCC-CCCccHHHHHHHHHHHhhCchhhhcccccccCC
Q 043000 542 ALRKLSDVKST-DGKTTLLHFVVEEVVRAEGRRCVINRNRSLSRS 585 (634)
Q Consensus 542 sL~KL~dvKs~-d~ktTLLhfvve~i~rsEg~~~~l~~~~~l~~~ 585 (634)
+|.||.|||++ |+++|||||||+.|.++. ..+++|.++|.+.
T Consensus 244 sL~KL~d~Ks~~d~k~TLLhylv~~v~~~~--p~l~~f~~eL~~v 286 (483)
T 2j1d_G 244 SLNKIADTKSSIDKNITLLHYLITIVENKY--PSVLNLNEELRDI 286 (483)
T ss_dssp GGGGGGGSBCSSCTTCBHHHHHHHHHHHHC--GGGGGHHHHTTTH
T ss_pred HHHhhhhcccCCCCCccHHHHHHHHHHHhC--chhhchHHHHhhH
Confidence 99999999995 999999999999998774 4677887877654
No 3
>3obv_E Protein diaphanous homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; HET: SUC; 2.75A {Mus musculus} PDB: 3o4x_E 2bap_D
Probab=100.00 E-value=8.7e-53 Score=462.73 Aligned_cols=265 Identities=26% Similarity=0.387 Sum_probs=226.4
Q ss_pred CCCCCCcCCcccccccCCcccc-ccccccccCCCCccc--chhHHHHhhhhccccCCCCcc-c---cCCCCCCCCCCcee
Q 043000 318 GNGNGHVKLKPLHWDKVNKNVE-HSMVWDKIDGGSFRF--DGDLMEALFGYVATNRRSPTR-E---RNSKNSTGPNSQVI 390 (634)
Q Consensus 318 ~~~~p~~KlK~LhW~Kv~~~~~-k~TVW~ki~~~s~~~--Dee~lE~lF~~~~~~~~s~~~-~---~~~~~~~~~~~~i~ 390 (634)
+...|.++||+|||+||..+.. ++|||+++++.++.- +++.||.+|+.+....+..+. . ...+...++.+.++
T Consensus 2 k~~~P~~~mK~l~W~ki~~~~~~~~t~W~~~~e~~~~~~~~f~~Le~~F~~~~~~~~~~k~~~~~~~~~~~~~kk~~~v~ 81 (457)
T 3obv_E 2 KVYKPEVQLRRPNWSKFVAEDLSQDCFWTKVKEDRFENNELFAKLTLAFSAQTKTSKAKKDQEGGEEKKSVQKKKVKELK 81 (457)
T ss_dssp CCCCCSSCBCCCCCCEECTTTTCSSSSGGGCCGGGGCCTTHHHHHHHHTBCC-----------------------CCCCS
T ss_pred CCCCCCCCCcCCCceeCCccccCCCceeeeCccccccChhHHHHHHHHhcccccccccccccccccccccccccCCceeE
Confidence 4567899999999999976554 689999998766532 246788999876432111110 0 00111234567899
Q ss_pred ecChhhhhhHHHHhhhcCCCHHHHHHHhhc--CCCCCHHHHHHHHhhCCChHHHHhhhhccCCCCCCChhhHHHHHHHhc
Q 043000 391 LLDARKSQNTAIVLKSLALSRGELLSAILD--GKELNPETLEKLTRVAPTKEEQSKILDFDGDPTRLADAESFHYHILKA 468 (634)
Q Consensus 391 iLD~KRaqNiaI~L~~L~~s~eei~~aLld--~~~L~~e~Le~Llk~~Pt~EE~~~L~~y~gd~~~L~~aE~Fl~~Llk~ 468 (634)
|||+||+|||+|+|++|+++.++|++||++ ...|+.+.|+.|++++||.||+..|++|.||...|+.+|+|++.|+ .
T Consensus 82 lLD~kraqNi~I~L~~lk~~~~ei~~aI~~~D~~~L~~e~l~~L~~~~Pt~eE~~~l~~~~~d~~~L~~~EqF~~~l~-~ 160 (457)
T 3obv_E 82 VLDSKTAQNLSIFLGSFRMPYQEIKNVILEVNEAVLTESMIQNLIKQMPEPEQLKMLSELKEEYDDLAESEQFGVVMG-T 160 (457)
T ss_dssp SSCHHHHHHHHHHHHHHCCCHHHHHHHHHHTCTTTCCHHHHHHHHHHCCCHHHHHHHHTTTTSGGGSCHHHHHHHHHT-S
T ss_pred ecCHHHHhHHHHHHhccCCCHHHHHHHHHhCCcccCCHHHHHHHHHhCCCHHHHHHHHHhccChhhcCHHHHHHHHHH-c
Confidence 999999999999999999999999999974 5689999999999999999999999999999999999999999987 7
Q ss_pred CCCHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccccccCCCCCCeeeeeccccccccc
Q 043000 469 VPSAYTRLNALLFRSNYDSEIAQFKETLQTLELGCKELRTRGLLLKLLEAILKAGNRMNAGTARGNAQAFNLTALRKLSD 548 (634)
Q Consensus 469 IP~~~~RL~amlf~~~f~~ev~~l~~~l~~l~~Ac~eLr~S~~f~kLLe~VL~iGN~mN~Gt~RG~A~GFkL~sL~KL~d 548 (634)
||++..||+||+|+.+|++++.+|+..|.+|..||++|++|+.|++||++||++|||||.|+.||+|+||+|++|.||.|
T Consensus 161 Ip~~~~Rl~~~~f~~~f~~~~~~l~~~l~~l~~A~~~l~~S~~l~~lL~~iL~~GN~mN~g~~~g~A~GFkL~sL~KL~d 240 (457)
T 3obv_E 161 VPRLRPRLNAILFKLQFSEQVENIKPEIVSVTAACEELRKSENFSSLLELTLLVGNYMNAGSRNAGAFGFNISFLCKLRD 240 (457)
T ss_dssp STTHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTTSTTCSCSCBCGGGHHHHTT
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhhhccCCcCCCeeeEehHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCccHHHHHHHHHHHhhCchhhhcccccccCC
Q 043000 549 VKSTDGKTTLLHFVVEEVVRAEGRRCVINRNRSLSRS 585 (634)
Q Consensus 549 vKs~d~ktTLLhfvve~i~rsEg~~~~l~~~~~l~~~ 585 (634)
||++|+++|||||||+.|.+. +..+++|.++|.+.
T Consensus 241 ~Ks~d~k~TLLh~l~~~v~~~--~p~l~~f~~eL~~v 275 (457)
T 3obv_E 241 TKSADQKMTLLHFLAELCEND--HPEVLKFPDELAHV 275 (457)
T ss_dssp CBCSSTTCBHHHHHHHHHHHH--CGGGGGHHHHCTTH
T ss_pred hhcCCCCccHHHHHHHHHHHc--CccccCChhhhhhH
Confidence 999999999999999999876 45788888888754
No 4
>1ux5_A BNI1 protein; structural protein, FH2 actin cytoskeleton; 2.5A {Saccharomyces cerevisiae} SCOP: a.207.1.1 PDB: 1y64_B* 1ux4_A
Probab=100.00 E-value=1.4e-50 Score=440.42 Aligned_cols=253 Identities=23% Similarity=0.305 Sum_probs=214.6
Q ss_pred CCCCcCCcccccccCCccccccccccccCCCCcc------cchhHHHHhhhhccccCCCCccccCCCCCCCCCCceeecC
Q 043000 320 GNGHVKLKPLHWDKVNKNVEHSMVWDKIDGGSFR------FDGDLMEALFGYVATNRRSPTRERNSKNSTGPNSQVILLD 393 (634)
Q Consensus 320 ~~p~~KlK~LhW~Kv~~~~~k~TVW~ki~~~s~~------~Dee~lE~lF~~~~~~~~s~~~~~~~~~~~~~~~~i~iLD 393 (634)
..|+.+||+|||+||.. .++|||+++++.++. .|+++||++|+.+..... . +...++.+.++|||
T Consensus 3 p~P~~klK~l~W~ki~~--~~~tiW~~~~~~~~~~~l~~~~d~~~lE~lF~~~~~~~~----~---~~k~~~~~~v~lLd 73 (411)
T 1ux5_A 3 PRPHKKLKQLHWEKLDC--TDNSIWGTGKAEKFADDLYEKGVLADLEKAFAAREIKSL----A---SKRKEDLQKITFLS 73 (411)
T ss_dssp CCCSSCBCCCCCCCCSS--CCSSSCCSSHHHHHHHHHHHTTHHHHHHHHTBSSCCHHH----H---HHHHHTTTSBCCSC
T ss_pred CCCCCCCCCcCcccCCC--CCCCcCcCCccHHHHHhhhhhchHHHHHHHhcccccccc----c---ccccCCCCeeeecC
Confidence 46788999999999976 899999999876542 278999999987653211 0 01123456799999
Q ss_pred hhhhhhHHHHhhhc-CCCHHHHHHHhhcCC--CCCH-HHHHH------------HH-hhCCChHHHH------hhhhccC
Q 043000 394 ARKSQNTAIVLKSL-ALSRGELLSAILDGK--ELNP-ETLEK------------LT-RVAPTKEEQS------KILDFDG 450 (634)
Q Consensus 394 ~KRaqNiaI~L~~L-~~s~eei~~aLld~~--~L~~-e~Le~------------Ll-k~~Pt~EE~~------~L~~y~g 450 (634)
+||+|||+|+|++| +++.++|++||++++ .|+. ++++. |+ +|+||.+|.+ .+++|.|
T Consensus 74 ~kraqNi~I~L~~~~~~~~~ei~~ai~~~D~~~L~~~~lie~L~~~~~~ei~~~L~~~~~P~~~e~e~l~~~~~~~~~~~ 153 (411)
T 1ux5_A 74 RDISQQFGINLHMYSSLSVADLVKKILNCDRDFLQTPSVVEFLSKSEIIEVSVNLARNYAPYSTDWEGVRNLEDAKPPEK 153 (411)
T ss_dssp HHHHHHHHHHTGGGTTSCHHHHHHHHHTTTHHHHTCHHHHHHTTCHHHHCCCHHHHHHTGGGCCCCTTCCCGGGCCCCSS
T ss_pred hHHHHHHHHHHHhcCCCCHHHHHHHHHhcChhhcCHHHHHHHhchhHHHhhHHHHHHhcCCCchhHHHHHHHHHhhhccC
Confidence 99999999999998 899999999998665 4663 33443 45 6999888865 4456789
Q ss_pred CCCCCChhhHHHHHHHhcC-CCHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccccccC
Q 043000 451 DPTRLADAESFHYHILKAV-PSAYTRLNALLFRSNYDSEIAQFKETLQTLELGCKELRTRGLLLKLLEAILKAGNRMNAG 529 (634)
Q Consensus 451 d~~~L~~aE~Fl~~Llk~I-P~~~~RL~amlf~~~f~~ev~~l~~~l~~l~~Ac~eLr~S~~f~kLLe~VL~iGN~mN~G 529 (634)
|...|+++|||+++|+..| |++.+||+||+|+.+|++++.+|+..+.+|..||++|++|+.|++||++||++|||||+|
T Consensus 154 d~~~L~~~eqf~~~l~~~i~~~~~~Rl~~~~f~~~f~~~~~~l~~~l~~l~~A~~el~~S~~l~~lL~~iL~~GN~mN~g 233 (411)
T 1ux5_A 154 DPNDLQRADQIYLQLMVNLESYWGSRMRALTVVTSYEREYNELLAKLRKVDKAVSALQESDNLRNVFNVILAVGNFMNDT 233 (411)
T ss_dssp CSTTBCHHHHHHHHTTTTTTTTHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSCG
T ss_pred ChhhCCHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHhCcccCC
Confidence 9999999999999987668 568999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCeeeeecccccccccccCCCCCccHHHHHHHHHHHhhCchhhhcccccccCC
Q 043000 530 TARGNAQAFNLTALRKLSDVKSTDGKTTLLHFVVEEVVRAEGRRCVINRNRSLSRS 585 (634)
Q Consensus 530 t~RG~A~GFkL~sL~KL~dvKs~d~ktTLLhfvve~i~rsEg~~~~l~~~~~l~~~ 585 (634)
+. +|+||+|++|.||.|||++|+++|||||||+.|.+. +..+++|.++|.+.
T Consensus 234 ~~--~A~GFkL~sL~KL~d~Ks~d~k~TLLh~l~~~v~~~--~p~l~~f~~eL~~v 285 (411)
T 1ux5_A 234 SK--QAQGFKLSTLQRLTFIKDTTNSMTFLNYVEKIVRLN--YPSFNDFLSELEPV 285 (411)
T ss_dssp GG--CCSCCCGGGGGGSSSCBCTTSCSBHHHHHHHHHHHH--CGGGGGHHHHTHHH
T ss_pred CC--CeeEeehhHHHHHHHhhCCCCCccHHHHHHHHHHHh--CcccccccchhhhH
Confidence 85 799999999999999999999999999999998866 45777887777654
No 5
>1v9d_A Diaphanous protein homolog 1; helix bundle, protein binding; 2.60A {Mus musculus} SCOP: a.207.1.1
Probab=100.00 E-value=4.4e-46 Score=395.89 Aligned_cols=199 Identities=30% Similarity=0.453 Sum_probs=163.3
Q ss_pred CCCCceeecChhhhhhHHHHhhhcCCCHHHHHHHhhc--CCCCCHHHHHHHHhhCCChHHHHhhhhccCCCCCCChhhHH
Q 043000 384 GPNSQVILLDARKSQNTAIVLKSLALSRGELLSAILD--GKELNPETLEKLTRVAPTKEEQSKILDFDGDPTRLADAESF 461 (634)
Q Consensus 384 ~~~~~i~iLD~KRaqNiaI~L~~L~~s~eei~~aLld--~~~L~~e~Le~Llk~~Pt~EE~~~L~~y~gd~~~L~~aE~F 461 (634)
++.+.++|||+||+|||+|+|++|+++.++|++||++ ...|+.|.|+.|++++||+||+..|++|.||...|+++|+|
T Consensus 4 kk~~~i~vLD~kraqNi~I~L~~~k~~~~ei~~aI~~~D~~~L~~e~l~~L~~~~Pt~eE~~~l~~~~~~~~~L~~~EqF 83 (340)
T 1v9d_A 4 KKVKELKVLDSKTAQNLSIFLGSFRMPYQEIKNVILEVNEAVLTESMIQNLIKQMPEPEQLKMLSELKEEYDDLAESEQF 83 (340)
T ss_dssp --CCCCSSSCHHHHHHHHHHHHHHCCCHHHHHHHHHHTCTTTCCHHHHHHHHHHSCCHHHHHHHHTCGGGGGGSCHHHHH
T ss_pred CCCCeeeecCHHHHhHHHHHHhhcCCCHHHHHHHHHhCCcccCCHHHHHHHHccCCCHHHHHHHHHhhCChhhcCHHHHH
Confidence 4567899999999999999999999999999999985 45799999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccccccCCCCCCeeeeecc
Q 043000 462 HYHILKAVPSAYTRLNALLFRSNYDSEIAQFKETLQTLELGCKELRTRGLLLKLLEAILKAGNRMNAGTARGNAQAFNLT 541 (634)
Q Consensus 462 l~~Llk~IP~~~~RL~amlf~~~f~~ev~~l~~~l~~l~~Ac~eLr~S~~f~kLLe~VL~iGN~mN~Gt~RG~A~GFkL~ 541 (634)
++.|+ .||++..||+||+|+.+|++++.+|+..+.+|..||++|++|+.|++||++||++|||||+|+.||+|+||+|+
T Consensus 84 ~~~l~-~ip~~~~Rl~~~~f~~~f~~~~~~l~~~l~~l~~A~~el~~S~~l~~lL~~iL~~GN~mN~g~~~g~A~GFkL~ 162 (340)
T 1v9d_A 84 GVVMG-TVPRLRPRLNAILFKLQFSEQVENIKPEIVSVTAACEELRKSENFSSLLELTLLVGNYMNAGSRNAGAFGFNIS 162 (340)
T ss_dssp HHHHH-TSTTHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTCHHHHHCC------------------------C
T ss_pred HHHHH-CCCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHcCcCCCCCCCCceeeeehH
Confidence 99997 79999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccCCCCCccHHHHHHHHHHHhhCchhhhcccccccCC
Q 043000 542 ALRKLSDVKSTDGKTTLLHFVVEEVVRAEGRRCVINRNRSLSRS 585 (634)
Q Consensus 542 sL~KL~dvKs~d~ktTLLhfvve~i~rsEg~~~~l~~~~~l~~~ 585 (634)
+|.||.|||++|+++|||||||+.+.+. ++.+++|.++|.+.
T Consensus 163 sL~KL~d~Ks~d~k~TLLh~lv~~~~~~--~p~l~~f~~eL~~v 204 (340)
T 1v9d_A 163 FLCKLRDTKSADQKMTLLHFLAELCEND--HPEVLKFPDELAHV 204 (340)
T ss_dssp CHHHHHHSBCSSTTSBHHHHHHHHHHHS--CCTTSSGGGGCTTH
T ss_pred HHHhhhhhcCCCCCccHHHHHHHHHHHh--CchhccchhHHHhH
Confidence 9999999999999999999999999865 45778887777653
No 6
>1v9d_A Diaphanous protein homolog 1; helix bundle, protein binding; 2.60A {Mus musculus} SCOP: a.207.1.1
Probab=96.45 E-value=0.00091 Score=70.65 Aligned_cols=175 Identities=22% Similarity=0.223 Sum_probs=92.4
Q ss_pred CCCCHHHHHHHH----hh-CCChHHHHhhhhccCCCCCCChhhHHHHHHHhcCCCHHHHHHHHHhhhchHHHHHHHHHHH
Q 043000 422 KELNPETLEKLT----RV-APTKEEQSKILDFDGDPTRLADAESFHYHILKAVPSAYTRLNALLFRSNYDSEIAQFKETL 496 (634)
Q Consensus 422 ~~L~~e~Le~Ll----k~-~Pt~EE~~~L~~y~gd~~~L~~aE~Fl~~Llk~IP~~~~RL~amlf~~~f~~ev~~l~~~l 496 (634)
..||....+++. ++ +|..|-+.+|..++. ..|+ ...+..|++.+|.-.+. +.+ ..|.++... |
T Consensus 10 ~vLD~kraqNi~I~L~~~k~~~~ei~~aI~~~D~--~~L~--~e~l~~L~~~~Pt~eE~-~~l---~~~~~~~~~----L 77 (340)
T 1v9d_A 10 KVLDSKTAQNLSIFLGSFRMPYQEIKNVILEVNE--AVLT--ESMIQNLIKQMPEPEQL-KML---SELKEEYDD----L 77 (340)
T ss_dssp SSSCHHHHHHHHHHHHHHCCCHHHHHHHHHHTCT--TTCC--HHHHHHHHHHSCCHHHH-HHH---HTCGGGGGG----S
T ss_pred eecCHHHHhHHHHHHhhcCCCHHHHHHHHHhCCc--ccCC--HHHHHHHHccCCCHHHH-HHH---HHhhCChhh----c
Confidence 467777766643 34 466666778887654 4444 23456666778886653 211 233332211 2
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHhhccccccCCCCCCeeeeecccccccccccCCCCCccHHHHHHHHHHHhhCchhhh
Q 043000 497 QTLELGCKELRTRGLLLKLLEAILKAGNRMNAGTARGNAQAFNLTALRKLSDVKSTDGKTTLLHFVVEEVVRAEGRRCVI 576 (634)
Q Consensus 497 ~~l~~Ac~eLr~S~~f~kLLe~VL~iGN~mN~Gt~RG~A~GFkL~sL~KL~dvKs~d~ktTLLhfvve~i~rsEg~~~~l 576 (634)
...+.-+-+|..=..+. .|-.+.-|+.++-..+.+++.. ...+.-.|++|..|..++.+|
T Consensus 78 ~~~EqF~~~l~~ip~~~-----------------~Rl~~~~f~~~f~~~~~~l~~~---l~~l~~A~~el~~S~~l~~lL 137 (340)
T 1v9d_A 78 AESEQFGVVMGTVPRLR-----------------PRLNAILFKLQFSEQVENIKPE---IVSVTAACEELRKSENFSSLL 137 (340)
T ss_dssp CHHHHHHHHHHTSTTHH-----------------HHHHHHHHHHHHHHHHHTTHHH---HHHHHHHHHHHHTCHHHHHCC
T ss_pred CHHHHHHHHHHCCCCHH-----------------HHHHHHHHHhhHHHHHHHHHHH---HHHHHHHHHHHHhChHHHHHH
Confidence 22222222222222222 2344555666666666666653 445777899999998888877
Q ss_pred c---ccccccCCCCCCCCCCCCCCC----------------CCCCChhHHHHHHHhcCcchhcccchhhhhhhhhc
Q 043000 577 N---RNRSLSRSGSSRNSSSGSLTS----------------ENSTPKEEKEKEYMRLGLPVIGGLSAEFSNVKKAA 633 (634)
Q Consensus 577 ~---~~~~l~~~~s~~~~~~~~~~~----------------~~~~~~~~~~~~y~~~gl~~v~~l~~el~~vkkaa 633 (634)
. ..+|++|.|++++++.||.++ +.|+..+.++++|.. |.+|.+||.+|++||
T Consensus 138 ~~iL~~GN~mN~g~~~g~A~GFkL~sL~KL~d~Ks~d~k~TLLh~lv~~~~~~~p~-----l~~f~~eL~~v~~As 208 (340)
T 1v9d_A 138 ELTLLVGNYMNAGSRNAGAFGFNISFLCKLRDTKSADQKMTLLHFLAELCENDHPE-----VLKFPDELAHVEKAS 208 (340)
T ss_dssp ------------------------CCHHHHHHSBCSSTTSBHHHHHHHHHHHSCCT-----TSSGGGGCTTHHHHH
T ss_pred HHHHHHcCcCCCCCCCCceeeeehHHHHhhhhhcCCCCCccHHHHHHHHHHHhCch-----hccchhHHHhHHHHH
Confidence 7 579999999888888887765 345556667777776 899999999999997
No 7
>2j1d_G DAAM1, disheveled-associated activator of morphogenesis; actin assembly, protein binding; 2.55A {Homo sapiens} PDB: 2z6e_A
Probab=95.44 E-value=0.0053 Score=67.84 Aligned_cols=176 Identities=17% Similarity=0.170 Sum_probs=105.8
Q ss_pred CCCCHHHHHHHHhh-----CCChHHHHhhhhccCCCCCCChhhHHHHHHHhcCCCHHHHHHHHHhhhchHHHHHHHHHHH
Q 043000 422 KELNPETLEKLTRV-----APTKEEQSKILDFDGDPTRLADAESFHYHILKAVPSAYTRLNALLFRSNYDSEIAQFKETL 496 (634)
Q Consensus 422 ~~L~~e~Le~Llk~-----~Pt~EE~~~L~~y~gd~~~L~~aE~Fl~~Llk~IP~~~~RL~amlf~~~f~~ev~~l~~~l 496 (634)
..||....+++..+ ++..|.+.+|..++. ...|+ ...+..|++.+|.-.+.-.. ..|..+.. .|
T Consensus 91 ~lLD~kRaqNi~I~L~~lk~~~~ei~~aIl~~D~-~~~L~--~e~l~~Ll~~~Pt~eE~~~l----~~~~~d~~----~L 159 (483)
T 2j1d_G 91 SVIDGRRAQNCNILLSRLKLSNDEIKRAILTMDE-QEDLP--KDMLEQLLKFVPEKSDIDLL----EEHKHELD----RM 159 (483)
T ss_dssp CCSCHHHHHHHHHHHHHHCCCHHHHHHHHHTTST-TCCCC--HHHHHHHHHSCCCHHHHHHH----HTTTTCGG----GB
T ss_pred eeCCHHHHHHHHHHHhcCCCCHHHHHHHHHccCc-cccCC--HHHHHHHHHhCCCHHHHHHH----HHhccChh----hc
Confidence 46777766664322 245566778877654 03444 23355666778876552111 12322211 12
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHhhccccccCCCCCCeeeeecccccccccccCCCCCccHHHHHHHHHHHhhCchhhh
Q 043000 497 QTLELGCKELRTRGLLLKLLEAILKAGNRMNAGTARGNAQAFNLTALRKLSDVKSTDGKTTLLHFVVEEVVRAEGRRCVI 576 (634)
Q Consensus 497 ~~l~~Ac~eLr~S~~f~kLLe~VL~iGN~mN~Gt~RG~A~GFkL~sL~KL~dvKs~d~ktTLLhfvve~i~rsEg~~~~l 576 (634)
...+.-+-+| ..+-+| ..|-.+.-|+.++-..+.+++. +...+.-.|++|..|..++.+|
T Consensus 160 ~~aEqFl~~l-------------~~ip~~----~~Rl~~l~f~~~f~~~~~~l~~---~l~~l~~A~~el~~S~~l~~lL 219 (483)
T 2j1d_G 160 AKADRFLFEM-------------SRINHY----QQRLQSLYFKKKFAERVAEVKP---KVEAIRSGSEEVFRSGALKQLL 219 (483)
T ss_dssp CHHHHHHHHH-------------HTSTTH----HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHCHHHHHHH
T ss_pred CHHHHHHHHH-------------hCCccH----HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhchHHHHHH
Confidence 2222222222 222222 1344556677776667777765 3456777899999999888877
Q ss_pred c---ccccccCCCCCCCCCCCCCCC-----------------CCCCChhHHHHHHHhcCcchhcccchhhhhhhhhcC
Q 043000 577 N---RNRSLSRSGSSRNSSSGSLTS-----------------ENSTPKEEKEKEYMRLGLPVIGGLSAEFSNVKKAAT 634 (634)
Q Consensus 577 ~---~~~~l~~~~s~~~~~~~~~~~-----------------~~~~~~~~~~~~y~~~gl~~v~~l~~el~~vkkaa~ 634 (634)
. ..+++++.| ..+++.||.++ ++|+..+..++.|.. |.+|.+||.+|++||.
T Consensus 220 ~~IL~~GN~mN~g-~rg~A~GFkL~sL~KL~d~Ks~~d~k~TLLhylv~~v~~~~p~-----l~~f~~eL~~v~~Ask 291 (483)
T 2j1d_G 220 EVVLAFGNYMNKG-QRGNAYGFKISSLNKIADTKSSIDKNITLLHYLITIVENKYPS-----VLNLNEELRDIPQAAK 291 (483)
T ss_dssp HHHHHHHHHHSCS-SSCCCSCCCGGGGGGGGGSBCSSCTTCBHHHHHHHHHHHHCGG-----GGGHHHHTTTHHHHHT
T ss_pred HHHHHHhhhhccC-CCCCceeeehHHHHhhhhcccCCCCCccHHHHHHHHHHHhCch-----hhchHHHHhhHHHHhc
Confidence 7 568899888 45677776554 335555667778877 7899999999999973
No 8
>4eah_A Formin-like protein 3, actin, alpha skeletal muscle; ATP binding, cytoskeleton, FMNL3, protein BIN; HET: ATP; 3.40A {Mus musculus}
Probab=95.34 E-value=0.0016 Score=70.40 Aligned_cols=178 Identities=16% Similarity=0.115 Sum_probs=101.9
Q ss_pred CCCCHHHHHHHH----hh-CCChHHHHhhhhccCCCCCCChhhHHHHHHHhcCCCHHHHHHHHHhhhchHHHHHHHHHHH
Q 043000 422 KELNPETLEKLT----RV-APTKEEQSKILDFDGDPTRLADAESFHYHILKAVPSAYTRLNALLFRSNYDSEIAQFKETL 496 (634)
Q Consensus 422 ~~L~~e~Le~Ll----k~-~Pt~EE~~~L~~y~gd~~~L~~aE~Fl~~Llk~IP~~~~RL~amlf~~~f~~ev~~l~~~l 496 (634)
..||....+++. ++ ++..|.+.+|..++.+ .|+ ..++..|++.+|.-.+.-.. ..|..+...+ ..|
T Consensus 85 ~lLd~kra~Ni~I~L~~l~~~~~ei~~aI~~~D~~--~L~--~e~l~~L~~~~Pt~eE~~~l----~~~~~~~~~~-~~L 155 (402)
T 4eah_A 85 TLLEANRAKNLAITLRKAGRSAEEICRAIHTFDLQ--TLP--VDFVECLMRFLPTEAEVKLL----RQYERERQPL-EEL 155 (402)
T ss_dssp CSSCHHHHHHHHHHHHHHCCCHHHHHHHHHTTSCS--CCC--HHHHHHHHHTCCCHHHHHHH----HHHHHSSCCT-TTB
T ss_pred eeCCHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcc--cCC--HHHHHHHHhcCCCHHHHHHH----HHhhccCCch-hhc
Confidence 456776666543 33 4666667788876544 454 34456677778875553111 1222110000 011
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHhhccccccCCCCCCeeeeecccccccccccCCCCCccHHHHHHHHHHHhhCchhhh
Q 043000 497 QTLELGCKELRTRGLLLKLLEAILKAGNRMNAGTARGNAQAFNLTALRKLSDVKSTDGKTTLLHFVVEEVVRAEGRRCVI 576 (634)
Q Consensus 497 ~~l~~Ac~eLr~S~~f~kLLe~VL~iGN~mN~Gt~RG~A~GFkL~sL~KL~dvKs~d~ktTLLhfvve~i~rsEg~~~~l 576 (634)
...+.-+-+|..-..+.. |-.+..|+.++-..+.+++. +...+.-.|++|..|+..+.+|
T Consensus 156 ~~~EqF~~~l~~ip~~~~-----------------Rl~~l~f~~~f~~~~~~l~~---~l~~v~~A~~~l~~S~~l~~lL 215 (402)
T 4eah_A 156 AAEDRFMLLFSKVERLTQ-----------------RMAGMAFLGNFQDNLQMLTP---QLNAIIAASASVKSSQKLKQML 215 (402)
T ss_dssp CHHHHHHHHHHHSTTHHH-----------------HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHTCHHHHHHH
T ss_pred cHHHHHHHHHHccccHHH-----------------HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHccHHHHHHH
Confidence 111112222222222222 33444555555555566554 3345667888898888888777
Q ss_pred c---ccccccCCCCCCCCCCCCCCC----------------CCCCChhHHHHHHHhcCcchhcccchhhhhhhhhcC
Q 043000 577 N---RNRSLSRSGSSRNSSSGSLTS----------------ENSTPKEEKEKEYMRLGLPVIGGLSAEFSNVKKAAT 634 (634)
Q Consensus 577 ~---~~~~l~~~~s~~~~~~~~~~~----------------~~~~~~~~~~~~y~~~gl~~v~~l~~el~~vkkaa~ 634 (634)
. ..+++++.| .++++.||.++ +.|+..+..+++|.. +.+|.+||.+|.+||.
T Consensus 216 ~~iL~~GN~mN~g-~rg~A~GFkL~sL~KL~d~Ks~d~k~TLLh~l~~~~~~~~p~-----l~~f~~eL~~v~~Aa~ 286 (402)
T 4eah_A 216 EIILALGNYMNSS-KRGAVYGFKLQSLDLLLDTKSTDRKMTLLHFIALTVKEKYPE-----LANFWQELHFVEKAAA 286 (402)
T ss_dssp HHHHHHHHHHHCS-SSCCCSCBCGGGGGSSSSSBCTTSSSBHHHHHHHHHHHHCGG-----GGTCSTTCCSHHHHHT
T ss_pred HHHHHHhhhccCC-CCCccceeeHHHHHHHHhccCCCCCccHHHHHHHHHHhhhHH-----HHHHhhhhhhHHHHhc
Confidence 6 468888876 34566676554 345556667778877 8899999999999973
No 9
>3obv_E Protein diaphanous homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; HET: SUC; 2.75A {Mus musculus} PDB: 3o4x_E 2bap_D
Probab=82.70 E-value=1.4 Score=48.14 Aligned_cols=178 Identities=21% Similarity=0.198 Sum_probs=112.1
Q ss_pred cCCCCCHHHHHHHH----hh-CCChHHHHhhhhccCCCCCCChhhHHHHHHHhcCCCHHHHHHHHHhhhchHHHHHHHHH
Q 043000 420 DGKELNPETLEKLT----RV-APTKEEQSKILDFDGDPTRLADAESFHYHILKAVPSAYTRLNALLFRSNYDSEIAQFKE 494 (634)
Q Consensus 420 d~~~L~~e~Le~Ll----k~-~Pt~EE~~~L~~y~gd~~~L~~aE~Fl~~Llk~IP~~~~RL~amlf~~~f~~ev~~l~~ 494 (634)
.-..||....+++. ++ ++..|.+.+|..++.+ .|+ ...+..|++.+|.-.+.-.. ..|..+...
T Consensus 79 ~v~lLD~kraqNi~I~L~~lk~~~~ei~~aI~~~D~~--~L~--~e~l~~L~~~~Pt~eE~~~l----~~~~~d~~~--- 147 (457)
T 3obv_E 79 ELKVLDSKTAQNLSIFLGSFRMPYQEIKNVILEVNEA--VLT--ESMIQNLIKQMPEPEQLKML----SELKEEYDD--- 147 (457)
T ss_dssp CCSSSCHHHHHHHHHHHHHHCCCHHHHHHHHHHTCTT--TCC--HHHHHHHHHHCCCHHHHHHH----HTTTTSGGG---
T ss_pred eeEecCHHHHhHHHHHHhccCCCHHHHHHHHHhCCcc--cCC--HHHHHHHHHhCCCHHHHHHH----HHhccChhh---
Confidence 34567777666653 33 4666667788877553 444 23456666778887663211 123322211
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHhhccccccCCCCCCeeeeecccccccccccCCCCCccHHHHHHHHHHHhhCchh
Q 043000 495 TLQTLELGCKELRTRGLLLKLLEAILKAGNRMNAGTARGNAQAFNLTALRKLSDVKSTDGKTTLLHFVVEEVVRAEGRRC 574 (634)
Q Consensus 495 ~l~~l~~Ac~eLr~S~~f~kLLe~VL~iGN~mN~Gt~RG~A~GFkL~sL~KL~dvKs~d~ktTLLhfvve~i~rsEg~~~ 574 (634)
|...+.-+-+|.+=..+. .|..+..|+.++-..+.+++. +...|.-.|++|..|..++.
T Consensus 148 -L~~~EqF~~~l~~Ip~~~-----------------~Rl~~~~f~~~f~~~~~~l~~---~l~~l~~A~~~l~~S~~l~~ 206 (457)
T 3obv_E 148 -LAESEQFGVVMGTVPRLR-----------------PRLNAILFKLQFSEQVENIKP---EIVSVTAACEELRKSENFSS 206 (457)
T ss_dssp -SCHHHHHHHHHTSSTTHH-----------------HHHHHHHHHHHHHHHHTTTHH---HHHHHHHHHHHHHTCHHHHH
T ss_pred -cCHHHHHHHHHHccccHH-----------------HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHccHHHHH
Confidence 222222222222212222 344566677766666766665 34457778999999988888
Q ss_pred hhc---ccccccCCCCCCCCCCCCCCC----------------CCCCChhHHHHHHHhcCcchhcccchhhhhhhhhcC
Q 043000 575 VIN---RNRSLSRSGSSRNSSSGSLTS----------------ENSTPKEEKEKEYMRLGLPVIGGLSAEFSNVKKAAT 634 (634)
Q Consensus 575 ~l~---~~~~l~~~~s~~~~~~~~~~~----------------~~~~~~~~~~~~y~~~gl~~v~~l~~el~~vkkaa~ 634 (634)
+|. ..+++++.|+.++++.||.++ ++|+..+.++++|.. |.+|.+||.+|.+||.
T Consensus 207 lL~~iL~~GN~mN~g~~~g~A~GFkL~sL~KL~d~Ks~d~k~TLLh~l~~~v~~~~p~-----l~~f~~eL~~v~~Aak 280 (457)
T 3obv_E 207 LLELTLLVGNYMNAGSRNAGAFGFNISFLCKLRDTKSADQKMTLLHFLAELCENDHPE-----VLKFPDELAHVEKASR 280 (457)
T ss_dssp HHHHHHHHHHHHTTTSTTCSCSCBCGGGHHHHTTCBCSSTTCBHHHHHHHHHHHHCGG-----GGGHHHHCTTHHHHTT
T ss_pred HHHHHHHHhhhhccCCcCCCeeeEehHHHHHHHhhhcCCCCccHHHHHHHHHHHcCcc-----ccCChhhhhhHHhhcc
Confidence 777 578999999888888887654 445566778888887 8999999999999973
No 10
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=42.23 E-value=14 Score=26.45 Aligned_cols=25 Identities=8% Similarity=0.170 Sum_probs=9.8
Q ss_pred CCccchhhhhhhhhhHHHHHHHHHH
Q 043000 82 DNKTIAKAVAATAASTLFIAVLFFF 106 (634)
Q Consensus 82 ~~~~i~~~v~~taa~t~~~~~~~f~ 106 (634)
+...|+-.|.-.-+.-.+++++.||
T Consensus 9 s~GaIAGiVvG~v~gv~li~~l~~~ 33 (38)
T 2k1k_A 9 TGGEIVAVIFGLLLGAALLLGILVF 33 (38)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCceeeeehHHHHHHHHHHHHHHH
Confidence 3444543333332333334444444
No 11
>3hyb_A RBCX protein; rubisco, protein complex assembly, chaperone; HET: SO4; 2.30A {Anabaena SP} PDB: 2wvw_I 2peo_A* 3rg6_C
Probab=30.13 E-value=67 Score=29.84 Aligned_cols=57 Identities=21% Similarity=0.339 Sum_probs=38.3
Q ss_pred HHHHHhhCCChHHHHhhhhccCCCCCCChhhHHHHHHHhcCCCHHHHHHHHHhhhchHHHHHH
Q 043000 429 LEKLTRVAPTKEEQSKILDFDGDPTRLADAESFHYHILKAVPSAYTRLNALLFRSNYDSEIAQ 491 (634)
Q Consensus 429 Le~Llk~~Pt~EE~~~L~~y~gd~~~L~~aE~Fl~~Llk~IP~~~~RL~amlf~~~f~~ev~~ 491 (634)
|.+|..+-| +...-|.+|.. .++.+.|.||..|++.-+.+..| .|.-+.-+.+++.+
T Consensus 47 LaQL~EtNP--~~y~wL~~F~s--~~iqDGe~fl~~L~~E~~~LA~R--IM~VRehlae~v~e 103 (155)
T 3hyb_A 47 LAQLGETNP--PLALWLHNFSA--GKVQDGEKYIEELFLEKPDLALR--IMTVREHIAEEIAE 103 (155)
T ss_dssp HHHHHHHCH--HHHHHHHHHHT--TCCSSHHHHHHHHHHHCHHHHHH--HHHHHHHHHHHHGG
T ss_pred HHHHHhcCH--HHHHHHHHHHc--CCcccHHHHHHHHHhhCHHHHHH--HHHHHHHHHHHHHH
Confidence 344555533 55667778876 78899999999998765555555 56666666665543
No 12
>3kpe_A Fusion glycoprotein F0; peptide-small-molecule complex, alpha helix, coiled-coil, EN protein, fusion protein; HET: TM3 PG4; 1.47A {Human respiratory syncytial virus} PDB: 1g2c_A
Probab=23.97 E-value=1.2e+02 Score=23.13 Aligned_cols=43 Identities=16% Similarity=0.241 Sum_probs=35.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccccccC
Q 043000 485 YDSEIAQFKETLQTLELGCKELRTRGLLLKLLEAILKAGNRMNAG 529 (634)
Q Consensus 485 f~~ev~~l~~~l~~l~~Ac~eLr~S~~f~kLLe~VL~iGN~mN~G 529 (634)
++.++..|++++..=..|+.+|.+. .+.+--+|-++-||.|.-
T Consensus 2 le~~I~~Lk~ai~~TNeAV~~L~~g--~~~la~Av~~iQ~~IN~~ 44 (51)
T 3kpe_A 2 LEGEVNKIKSALLSTNKAVVSLSNG--VSVLTSKVLDLKNYIDKQ 44 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHT
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Confidence 5678899999999999999998754 556677889999998854
No 13
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=23.88 E-value=41 Score=24.88 Aligned_cols=8 Identities=25% Similarity=0.447 Sum_probs=3.6
Q ss_pred cchhhhhh
Q 043000 85 TIAKAVAA 92 (634)
Q Consensus 85 ~i~~~v~~ 92 (634)
.||..|..
T Consensus 12 ~IA~gVVg 19 (44)
T 2ks1_B 12 SIATGMVG 19 (44)
T ss_dssp SSTHHHHH
T ss_pred eEEeehhH
Confidence 35444444
No 14
>3c4r_A Uncharacterized protein; PSI-II, structural genomics, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.30A {Escherichia coli O6}
Probab=21.82 E-value=84 Score=29.15 Aligned_cols=28 Identities=25% Similarity=0.248 Sum_probs=9.4
Q ss_pred HHHHHHHHHHhhccccccCCCCCCeeee
Q 043000 511 LLLKLLEAILKAGNRMNAGTARGNAQAF 538 (634)
Q Consensus 511 ~f~kLLe~VL~iGN~mN~Gt~RG~A~GF 538 (634)
....+..++.++.+.||.|+.-|++.+.
T Consensus 115 ~~~~~~~~~~a~~~~~~~~g~~g~~~~~ 142 (151)
T 3c4r_A 115 DADDFVAVAIAGFNQMNRGGPAGNIVAV 142 (151)
T ss_dssp HHHHHHHHHHHHC---------------
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCCeeee
Confidence 3445677889999999999999988654
Done!