BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>043001
MEGGSSRTRHTRSQVGPDWSSKEALILGNEIAAVEADCLKALSSYQKWKIISETCTALDV
PRTANQCRRKWDSLIDEYKKIIVRSRTFPKSQTQAHTDCFPPNFDRELFKAIHDFVMSKD
N

High Scoring Gene Products

Symbol, full name Information P value
AT4G31270 protein from Arabidopsis thaliana 1.5e-26
AT2G33550 protein from Arabidopsis thaliana 0.00058
AT2G35640 protein from Arabidopsis thaliana 0.00066

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  043001
        (121 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2128186 - symbol:AT4G31270 species:3702 "Arabi...   299  1.5e-26   1
TAIR|locus:2051174 - symbol:AT2G33550 species:3702 "Arabi...    93  0.00058   1
TAIR|locus:2058718 - symbol:AT2G35640 species:3702 "Arabi...    93  0.00066   1


>TAIR|locus:2128186 [details] [associations]
            symbol:AT4G31270 species:3702 "Arabidopsis thaliana"
            [GO:0005634 "nucleus" evidence=ISM] [GO:0003700 "sequence-specific
            DNA binding transcription factor activity" evidence=ISS]
            [GO:0006355 "regulation of transcription, DNA-dependent"
            evidence=RCA;TAS] [GO:0009506 "plasmodesma" evidence=IDA]
            [GO:0043687 "post-translational protein modification" evidence=RCA]
            [GO:0045893 "positive regulation of transcription, DNA-dependent"
            evidence=RCA] GO:GO:0009506 EMBL:CP002687 GO:GO:0003700
            EMBL:BT005287 EMBL:AK118674 IPI:IPI00541003 RefSeq:NP_194855.2
            UniGene:At.31756 ProteinModelPortal:Q8GWR8 PRIDE:Q8GWR8
            EnsemblPlants:AT4G31270.1 GeneID:829254 KEGG:ath:AT4G31270
            TAIR:At4g31270 HOGENOM:HOG000148318 InParanoid:Q8GWR8 OMA:LPANCNT
            PhylomeDB:Q8GWR8 ProtClustDB:CLSN2918239 Genevestigator:Q8GWR8
            Uniprot:Q8GWR8
        Length = 294

 Score = 299 (110.3 bits), Expect = 1.5e-26, P = 1.5e-26
 Identities = 66/128 (51%), Positives = 84/128 (65%)

Query:     1 MEGGSSRTRHTRSQVGPDWSSKEALILGNEIAAVEADCLKALSSYQKWKIISETCTALDV 60
             ME G+S +R TRSQV P+W+ K+ L+L NEIAAVEADC  ALSS+QKW +I+E C ALDV
Sbjct:     1 MEEGTSGSRRTRSQVAPEWAVKDCLVLVNEIAAVEADCSNALSSFQKWTMITENCNALDV 60

Query:    61 PRTANQCRRKWDSLIDEY---KKIIVRSRTFPKSQTQAHTDC-----FPPNFDRELFKAI 112
              R  NQCRRKWDSL+ +Y   KK   + R   +S     +D       P + D ELF+AI
Sbjct:    61 SRNLNQCRRKWDSLMSDYNQIKKWESQYRGTGRSYWSLSSDKRKLLNLPGDIDIELFEAI 120

Query:   113 HDFVMSKD 120
             +  VM +D
Sbjct:   121 NAVVMIQD 128


>TAIR|locus:2051174 [details] [associations]
            symbol:AT2G33550 species:3702 "Arabidopsis thaliana"
            [GO:0005634 "nucleus" evidence=ISM] [GO:0003700 "sequence-specific
            DNA binding transcription factor activity" evidence=ISS]
            [GO:0006355 "regulation of transcription, DNA-dependent"
            evidence=TAS] InterPro:IPR009057 EMBL:CP002685 GO:GO:0003677
            GO:GO:0003700 Gene3D:1.10.10.60 InterPro:IPR017877 PROSITE:PS50090
            EMBL:AY065364 EMBL:AY096389 IPI:IPI00526924 RefSeq:NP_850213.1
            UniGene:At.28516 ProteinModelPortal:Q8VZ20 SMR:Q8VZ20 IntAct:Q8VZ20
            PRIDE:Q8VZ20 EnsemblPlants:AT2G33550.1 GeneID:817920
            KEGG:ath:AT2G33550 TAIR:At2g33550 HOGENOM:HOG000240766
            InParanoid:Q8VZ20 OMA:EETESFW PhylomeDB:Q8VZ20
            ProtClustDB:CLSN2680007 Genevestigator:Q8VZ20 Uniprot:Q8VZ20
        Length = 314

 Score = 93 (37.8 bits), Expect = 0.00058, P = 0.00058
 Identities = 29/89 (32%), Positives = 41/89 (46%)

Query:     2 EGGSSRTRHTRSQVGPDWSSKEALIL--GNEIAAVEADCLKA----LSSYQ---KWKIIS 52
             +GG    +  R    P W+ +E L+L  G  +A       +A    L S Q   KW  +S
Sbjct:    25 DGGDDGVKTARL---PRWTRQEILVLIQGKRVAENRVRRGRAAGMALGSGQMEPKWASVS 81

Query:    53 ETCTALDVPRTANQCRRKWDSLIDEYKKI 81
               C    V R   QCR++W +L  +YKKI
Sbjct:    82 SYCKRHGVNRGPVQCRKRWSNLAGDYKKI 110


>TAIR|locus:2058718 [details] [associations]
            symbol:AT2G35640 species:3702 "Arabidopsis thaliana"
            [GO:0005634 "nucleus" evidence=ISM] [GO:0003700 "sequence-specific
            DNA binding transcription factor activity" evidence=ISS]
            [GO:0006355 "regulation of transcription, DNA-dependent"
            evidence=TAS] EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0003700
            EMBL:AC006068 InterPro:IPR017877 PROSITE:PS50090 IPI:IPI00526509
            PIR:B84771 RefSeq:NP_181107.1 UniGene:At.53046 UniGene:At.75395
            ProteinModelPortal:Q9ZQN7 SMR:Q9ZQN7 ProMEX:Q9ZQN7
            EnsemblPlants:AT2G35640.1 GeneID:818133 KEGG:ath:AT2G35640
            TAIR:At2g35640 eggNOG:NOG315255 HOGENOM:HOG000240297
            InParanoid:Q9ZQN7 OMA:VESSFNT PhylomeDB:Q9ZQN7
            ProtClustDB:CLSN2683797 Genevestigator:Q9ZQN7 Uniprot:Q9ZQN7
        Length = 340

 Score = 93 (37.8 bits), Expect = 0.00066, P = 0.00066
 Identities = 19/49 (38%), Positives = 28/49 (57%)

Query:    47 KWKIISETCTALDVPRTANQCRRKWDSLIDEYKKIIVRSRTFPKSQTQA 95
             +WK I E C      R  NQC  KWD+L+ +YKKI    R + +S+ ++
Sbjct:    59 RWKWIEEYCWRRGCYRNQNQCNDKWDNLMRDYKKI----REYERSRVES 103


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.130   0.400    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      121       121   0.00091  102 3  11 22  0.36    31
                                                     29  0.49    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  587 (62 KB)
  Total size of DFA:  148 KB (2089 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  11.62u 0.09s 11.71t   Elapsed:  00:00:00
  Total cpu time:  11.62u 0.09s 11.71t   Elapsed:  00:00:00
  Start:  Sat May 11 13:45:37 2013   End:  Sat May 11 13:45:37 2013

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