BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043001
(121 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9C882|GTL1_ARATH Trihelix transcription factor GTL1 OS=Arabidopsis thaliana GN=GTL1
PE=1 SV=2
Length = 587
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 29/63 (46%)
Query: 19 WSSKEALILGNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLIDEY 78
W E L L N + +E + W+ IS + + R A +C+ KW+++ Y
Sbjct: 436 WPKAEILALINLRSGMEPRYQDNVPKGLLWEEISTSMKRMGYNRNAKRCKEKWENINKYY 495
Query: 79 KKI 81
KK+
Sbjct: 496 KKV 498
>sp|Q9P6R8|CWC24_SCHPO Pre-mRNA-splicing factor cwf24 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=cwf24 PE=1 SV=1
Length = 533
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 8/74 (10%)
Query: 12 RSQVGPDWSSKEALILGNEIAAVEADCLK--ALSSYQKWKIISETCTALDVP---RTANQ 66
+SQVGP SS + + N I + D K L+ Y + +TC L + + Q
Sbjct: 163 KSQVGPVLSSNASTVRMNTIIDYQPDVCKDYKLTGYCGY---GDTCKFLHMREDYKAGWQ 219
Query: 67 CRRKWDSLIDEYKK 80
R+WDS+ ++YKK
Sbjct: 220 LDREWDSVQEKYKK 233
>sp|O80450|TGT3B_ARATH Trihelix transcription factor GT-3b OS=Arabidopsis thaliana
GN=GT-3B PE=1 SV=1
Length = 289
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 29/63 (46%)
Query: 17 PDWSSKEALILGNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLID 76
P WS +E L ++ ++ + W++IS PR+ QC+ KW +L+
Sbjct: 40 PQWSVEETKELIGIRGELDQTFMETKRNKLLWEVISNKMRDKSFPRSPEQCKCKWKNLVT 99
Query: 77 EYK 79
+K
Sbjct: 100 RFK 102
>sp|P54931|NIFA_RHIEC Nif-specific regulatory protein OS=Rhizobium etli (strain CFN 42 /
ATCC 51251) GN=nifA PE=4 SV=1
Length = 584
Score = 30.4 bits (67), Expect = 3.2, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 7/50 (14%)
Query: 59 DVPRTANQCRRKWDSLIDEYKKIIVRSRTFPKSQTQAHTDCFPPNFDREL 108
D+PR AN +L+D + K R TF S + + C+ P REL
Sbjct: 406 DIPRLAN-------ALLDRFNKENQRELTFSSSAIEVMSQCYFPGNVREL 448
>sp|Q9SDW0|TGT3A_ARATH Trihelix transcription factor GT-3a OS=Arabidopsis thaliana
GN=GT-3A PE=1 SV=1
Length = 323
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 16/67 (23%), Positives = 31/67 (46%), Gaps = 8/67 (11%)
Query: 17 PDWSSKEALILGNEIAAVEADCLKALSSYQK----WKIISETCTALDVPRTANQCRRKWD 72
P WS +E E+ A+ + + ++ W++++ R+A QC+ KW
Sbjct: 50 PQWSIEET----KELLAIREELDQTFMETKRNKLLWEVVAAKMADKGFVRSAEQCKSKWK 105
Query: 73 SLIDEYK 79
+L+ YK
Sbjct: 106 NLVTRYK 112
>sp|O31396|IRLS_BURPS Sensor protein IrlS OS=Burkholderia pseudomallei (strain K96243)
GN=irlS PE=3 SV=2
Length = 464
Score = 30.0 bits (66), Expect = 4.9, Method: Composition-based stats.
Identities = 13/32 (40%), Positives = 22/32 (68%)
Query: 50 IISETCTALDVPRTANQCRRKWDSLIDEYKKI 81
+++E AL PRTA++ R +S IDEY+++
Sbjct: 261 LLAEAQVALSKPRTADEYRDVIESSIDEYQRL 292
>sp|Q8H181|GTL2_ARATH Trihelix transcription factor GTL2 OS=Arabidopsis thaliana
GN=At5g28300 PE=2 SV=1
Length = 619
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 10/79 (12%)
Query: 12 RSQVGPDWSSKEALILGN---EIAAVEADCLK---ALSSYQK----WKIISETCTALDVP 61
+S +G W E L L N I+ + D K +LS+ K W+ IS+ +
Sbjct: 453 KSDLGKRWPKDEVLALINIRRSISNMNDDDHKDENSLSTSSKAVPLWERISKKMLEIGYK 512
Query: 62 RTANQCRRKWDSLIDEYKK 80
R+A +C+ KW+++ ++K
Sbjct: 513 RSAKRCKEKWENINKYFRK 531
>sp|P33578|PR8A7_RAT Prolactin-8A7 OS=Rattus norvegicus GN=Prl8a7 PE=1 SV=2
Length = 240
Score = 29.6 bits (65), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 12/50 (24%), Positives = 24/50 (48%)
Query: 71 WDSLIDEYKKIIVRSRTFPKSQTQAHTDCFPPNFDRELFKAIHDFVMSKD 120
W+ L++ + I ++ T Q H + + F E F +++ V+ KD
Sbjct: 41 WNPLVETFNSAIHKAETLYDLANQIHVELYQNKFSSEQFSSLNSQVIRKD 90
>sp|Q9UM07|PADI4_HUMAN Protein-arginine deiminase type-4 OS=Homo sapiens GN=PADI4 PE=1
SV=2
Length = 663
Score = 29.3 bits (64), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 10/39 (25%), Positives = 22/39 (56%)
Query: 81 IIVRSRTFPKSQTQAHTDCFPPNFDRELFKAIHDFVMSK 119
+ VR + +P + C+P N R++ +A+ DF+ ++
Sbjct: 416 VTVRGKEYPLGRILFGDSCYPSNDSRQMHQALQDFLSAQ 454
>sp|Q39117|TGT2_ARATH Trihelix transcription factor GT-2 OS=Arabidopsis thaliana GN=GT-2
PE=2 SV=1
Length = 575
Score = 28.9 bits (63), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 34/78 (43%)
Query: 4 GSSRTRHTRSQVGPDWSSKEALILGNEIAAVEADCLKALSSYQKWKIISETCTALDVPRT 63
G+ H+ S W E L +EA+ + + W+ IS L R+
Sbjct: 383 GNYDNNHSVSPSSSRWPKTEVEALIRIRKNLEANYQENGTKGPLWEEISAGMRRLGYNRS 442
Query: 64 ANQCRRKWDSLIDEYKKI 81
A +C+ KW+++ +KK+
Sbjct: 443 AKRCKEKWENINKYFKKV 460
>sp|P17040|ZSC20_HUMAN Zinc finger and SCAN domain-containing protein 20 OS=Homo sapiens
GN=ZSCAN20 PE=2 SV=3
Length = 1043
Score = 28.9 bits (63), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 46 QKWKIISETCTALDVPRTANQCRRKWDSLIDEYKK 80
Q ++ I+E AL RT QCR ++ +L+ Y+K
Sbjct: 515 QVYRAIAERLCALGFLRTLEQCRYRFKNLLRSYRK 549
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.130 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,715,969
Number of Sequences: 539616
Number of extensions: 1413037
Number of successful extensions: 3321
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 3309
Number of HSP's gapped (non-prelim): 16
length of query: 121
length of database: 191,569,459
effective HSP length: 88
effective length of query: 33
effective length of database: 144,083,251
effective search space: 4754747283
effective search space used: 4754747283
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)