Query 043001
Match_columns 121
No_of_seqs 106 out of 288
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 11:47:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043001.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043001hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF13837 Myb_DNA-bind_4: Myb/S 99.8 5.3E-20 1.1E-24 122.1 6.5 85 17-115 2-90 (90)
2 KOG4282 Transcription factor G 99.7 8.2E-16 1.8E-20 124.5 12.2 90 16-117 54-143 (345)
3 PF13873 Myb_DNA-bind_5: Myb/S 98.9 1.3E-08 2.9E-13 66.1 8.6 66 15-80 1-74 (78)
4 PF00249 Myb_DNA-binding: Myb- 98.8 2E-08 4.3E-13 60.0 5.4 47 17-75 2-48 (48)
5 PF13921 Myb_DNA-bind_6: Myb-l 98.5 4.2E-07 9.1E-12 56.2 5.1 41 19-73 1-41 (60)
6 PLN03212 Transcription repress 98.4 8.6E-07 1.9E-11 70.0 6.9 50 15-76 24-73 (249)
7 smart00717 SANT SANT SWI3, AD 98.4 9.8E-07 2.1E-11 50.8 5.4 46 17-75 2-47 (49)
8 cd00167 SANT 'SWI3, ADA2, N-Co 98.3 1.7E-06 3.6E-11 49.1 5.3 44 18-74 1-44 (45)
9 PLN03091 hypothetical protein; 98.1 4.4E-06 9.5E-11 70.6 5.2 50 14-75 12-61 (459)
10 PF12776 Myb_DNA-bind_3: Myb/S 98.1 2.8E-05 6.1E-10 51.7 7.5 66 18-83 1-70 (96)
11 KOG0048 Transcription factor, 97.9 1.2E-05 2.5E-10 62.7 3.2 49 16-76 9-57 (238)
12 smart00595 MADF subfamily of S 97.7 0.0001 2.2E-09 48.4 4.9 37 42-83 24-60 (89)
13 PLN03212 Transcription repress 97.5 0.0003 6.6E-09 55.7 6.4 50 16-79 78-127 (249)
14 PLN03091 hypothetical protein; 97.4 0.00057 1.2E-08 58.0 6.8 51 16-80 67-117 (459)
15 PF10545 MADF_DNA_bdg: Alcohol 97.2 0.00053 1.1E-08 43.9 4.1 39 42-83 23-61 (85)
16 KOG1279 Chromatin remodeling f 96.6 0.0049 1.1E-07 53.3 6.0 50 12-75 249-298 (506)
17 TIGR02894 DNA_bind_RsfA transc 96.2 0.014 2.9E-07 43.7 5.5 59 15-81 3-62 (161)
18 KOG0051 RNA polymerase I termi 95.9 0.015 3.3E-07 51.2 5.4 59 16-78 436-510 (607)
19 COG5259 RSC8 RSC chromatin rem 95.6 0.026 5.6E-07 48.6 5.2 53 15-81 278-330 (531)
20 TIGR01557 myb_SHAQKYF myb-like 94.6 0.13 2.8E-06 32.0 5.1 44 16-71 3-50 (57)
21 KOG0049 Transcription factor, 94.1 0.13 2.8E-06 46.3 5.8 53 15-79 252-304 (939)
22 PRK13923 putative spore coat p 93.8 0.22 4.8E-06 37.6 5.9 58 15-80 4-62 (170)
23 KOG0457 Histone acetyltransfer 93.7 0.19 4E-06 42.9 6.0 44 15-71 71-114 (438)
24 KOG0049 Transcription factor, 91.7 0.4 8.6E-06 43.3 5.4 53 15-80 359-411 (939)
25 KOG0051 RNA polymerase I termi 91.4 0.38 8.3E-06 42.6 5.0 62 16-95 384-445 (607)
26 KOG0050 mRNA splicing protein 89.7 0.53 1.1E-05 41.3 4.3 47 15-74 6-52 (617)
27 KOG0048 Transcription factor, 88.4 1.9 4.2E-05 33.4 6.4 45 16-74 62-106 (238)
28 KOG0050 mRNA splicing protein 78.3 3.6 7.7E-05 36.3 4.3 50 19-83 62-111 (617)
29 COG5147 REB1 Myb superfamily p 77.0 1.7 3.7E-05 38.0 2.0 48 16-76 20-67 (512)
30 PF04504 DUF573: Protein of un 76.4 21 0.00045 24.2 7.9 65 16-83 4-70 (98)
31 COG5147 REB1 Myb superfamily p 73.7 4.6 9.9E-05 35.3 3.9 51 16-80 72-122 (512)
32 COG5114 Histone acetyltransfer 71.6 18 0.00039 30.3 6.7 42 16-70 63-104 (432)
33 cd01187 INT_SG4 INT_SG4, DNA b 66.7 12 0.00027 28.5 4.6 86 18-117 101-188 (299)
34 PF09356 Phage_BR0599: Phage c 59.5 4.2 9E-05 26.7 0.7 19 58-76 51-69 (80)
35 KOG3326 Uncharacterized conser 58.3 21 0.00045 26.5 4.2 43 73-119 93-141 (154)
36 PF05427 FIBP: Acidic fibrobla 51.5 49 0.0011 27.8 5.9 59 20-83 84-149 (361)
37 PF07750 GcrA: GcrA cell cycle 50.0 29 0.00062 25.7 3.9 39 17-68 1-39 (162)
38 PF10929 DUF2811: Protein of u 49.3 18 0.0004 22.6 2.3 19 103-121 5-23 (57)
39 PF08914 Myb_DNA-bind_2: Rap1 48.7 16 0.00034 23.1 2.0 53 18-81 4-56 (65)
40 TIGR01615 A_thal_3542 uncharac 44.5 3.5 7.5E-05 29.9 -1.7 23 50-74 3-25 (131)
41 KOG4167 Predicted DNA-binding 42.9 58 0.0012 30.2 5.3 54 16-83 619-676 (907)
42 PF07878 DUF1662: Protein of u 41.5 21 0.00046 22.0 1.7 28 34-62 24-51 (55)
43 smart00576 BTP Bromodomain tra 40.7 50 0.0011 21.0 3.5 32 49-80 10-41 (77)
44 PRK04387 hypothetical protein; 40.3 75 0.0016 21.6 4.4 23 16-38 8-30 (90)
45 PF04720 DUF506: Protein of un 39.0 18 0.00038 28.3 1.4 25 47-73 89-113 (218)
46 COG1117 PstB ABC-type phosphat 31.7 62 0.0013 25.9 3.3 32 38-69 126-157 (253)
47 PF01388 ARID: ARID/BRIGHT DNA 30.4 1.5E+02 0.0033 18.9 4.6 32 43-80 55-86 (92)
48 KOG4468 Polycomb-group transcr 30.1 2.2E+02 0.0047 26.1 6.7 57 17-83 89-145 (782)
49 PRK07217 replication factor A; 29.5 78 0.0017 26.1 3.7 33 48-80 8-40 (311)
50 cd01104 HTH_MlrA-CarA Helix-Tu 29.2 91 0.002 18.5 3.2 32 3-35 24-55 (68)
51 PF00435 Spectrin: Spectrin re 28.7 1.4E+02 0.0031 18.2 7.9 63 20-83 32-94 (105)
52 PF05256 UPF0223: Uncharacteri 26.6 1.2E+02 0.0026 20.5 3.6 23 16-38 8-30 (88)
53 PF15308 CEP170_C: CEP170 C-te 26.3 1.5E+02 0.0034 27.0 5.2 71 11-82 578-664 (689)
54 COG0218 Predicted GTPase [Gene 25.3 1.3E+02 0.0029 23.2 4.1 54 59-115 81-134 (200)
55 COG4877 Uncharacterized protei 24.3 76 0.0017 20.0 2.2 22 96-117 5-26 (63)
56 PF06057 VirJ: Bacterial virul 24.3 1.8E+02 0.0039 22.3 4.6 35 47-81 17-64 (192)
57 smart00426 TEA TEA domain. 24.1 66 0.0014 20.8 1.9 54 16-70 3-64 (68)
58 KOG4618 Uncharacterized conser 24.0 1E+02 0.0022 20.1 2.8 28 54-81 34-69 (74)
59 PF14131 DUF4298: Domain of un 23.8 1.9E+02 0.004 19.1 4.2 53 64-116 19-79 (90)
60 PF14920 MTBP_C: MDM2-binding 23.4 1.7E+02 0.0038 23.4 4.5 37 44-80 188-227 (251)
61 smart00501 BRIGHT BRIGHT, ARID 23.0 2.1E+02 0.0046 18.5 4.3 33 42-80 50-82 (93)
62 PF12926 MOZART2: Mitotic-spin 22.5 74 0.0016 21.6 2.0 16 103-118 40-55 (88)
63 PF08707 PriCT_2: Primase C te 21.9 1.1E+02 0.0025 19.3 2.8 28 43-74 36-63 (78)
64 PF00959 Phage_lysozyme: Phage 21.8 1.8E+02 0.0039 19.1 3.9 41 62-116 19-60 (110)
65 TIGR02218 phg_TIGR02218 phage 21.8 38 0.00082 26.5 0.5 19 58-76 183-201 (229)
66 PF12162 STAT1_TAZ2bind: STAT1 21.6 1.1E+02 0.0023 15.7 2.0 19 97-117 5-23 (23)
67 PRK10545 nucleotide excision r 20.9 84 0.0018 25.4 2.4 22 98-119 258-279 (286)
68 KOG1170 Diacylglycerol kinase 20.2 1.2E+02 0.0027 28.6 3.5 46 62-108 637-722 (1099)
69 PF14420 Clr5: Clr5 domain 20.0 1.8E+02 0.004 17.2 3.3 26 47-72 22-48 (54)
No 1
>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A.
Probab=99.81 E-value=5.3e-20 Score=122.06 Aligned_cols=85 Identities=26% Similarity=0.445 Sum_probs=57.0
Q ss_pred CCCCHHHHHHHHHHHHH--HHHHHHh--hcchhhhHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHhhhCCCCCCCCh
Q 043001 17 PDWSSKEALILGNEIAA--VEADCLK--ALSSYQKWKIISETCTALDVPRTANQCRRKWDSLIDEYKKIIVRSRTFPKSQ 92 (121)
Q Consensus 17 ~~Wt~~Etl~LI~~r~~--~e~~~~~--~~~~~~~W~~Ia~~m~~~G~~Rs~~QCr~KW~nL~~~Ykkikd~~~syw~~~ 92 (121)
..||.+||.+||+++.+ ++..|.. ...+..+|+.||+.|.++||.||+.||+.||+||.+.|+++++....
T Consensus 2 ~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L~~~Yk~~k~~~~~----- 76 (90)
T PF13837_consen 2 RNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKNLKKKYKKIKDRNKK----- 76 (90)
T ss_dssp -SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHHHHHHHHCSSSSSS------
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHhcCCC-----
Confidence 47999999999999998 5666764 45666799999999999999999999999999999999999984321
Q ss_pred hhhhhcCCCCCCcHHHHHHHHHH
Q 043001 93 TQAHTDCFPPNFDRELFKAIHDF 115 (121)
Q Consensus 93 ~~rk~~~LP~~fd~e~f~~ld~~ 115 (121)
-|. ..++|+.||++
T Consensus 77 -------~~~--~w~~f~~md~i 90 (90)
T PF13837_consen 77 -------SGS--SWPYFDEMDEI 90 (90)
T ss_dssp ------------S---TT-----
T ss_pred -------CCC--cCcCHHHHhcC
Confidence 011 34678888763
No 2
>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription]
Probab=99.67 E-value=8.2e-16 Score=124.51 Aligned_cols=90 Identities=20% Similarity=0.395 Sum_probs=78.5
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHhhhCCCCCCCChhhh
Q 043001 16 GPDWSSKEALILGNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLIDEYKKIIVRSRTFPKSQTQA 95 (121)
Q Consensus 16 ~~~Wt~~Etl~LI~~r~~~e~~~~~~~~~~~~W~~Ia~~m~~~G~~Rs~~QCr~KW~nL~~~Ykkikd~~~syw~~~~~r 95 (121)
.+.|+.+||++||.+|.++...|.++..+.++|++||.+|..+||.||+.||+.||+||.+.||+.+.+...
T Consensus 54 ~~~Ws~~et~~Li~~~~~~~~~~~~~~~k~~~We~va~k~~~~g~~rs~~qck~K~~nl~k~Yk~~k~~~~~-------- 125 (345)
T KOG4282|consen 54 EPRWSEEETLTLIEIRGEMDVALRRGKLKGPLWEEVARKMAELGYPRSPKQCKAKIENLKKKYKKEKAKKEG-------- 125 (345)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHhcccCC--------
Confidence 489999999999999999999999999999999999999999999999999999999999999999984321
Q ss_pred hhcCCCCCCcHHHHHHHHHHhh
Q 043001 96 HTDCFPPNFDRELFKAIHDFVM 117 (121)
Q Consensus 96 k~~~LP~~fd~e~f~~ld~~~~ 117 (121)
.. ..-...+|..|++++.
T Consensus 126 --~~--~~s~~~ff~~le~~~~ 143 (345)
T KOG4282|consen 126 --SG--EGSSWKFFSELEALLI 143 (345)
T ss_pred --CC--CCccchHHHHHHHHHh
Confidence 00 1223688999988874
No 3
>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain
Probab=98.91 E-value=1.3e-08 Score=66.07 Aligned_cols=66 Identities=26% Similarity=0.353 Sum_probs=52.9
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHh-------hcchhhhHHHHHHHhhhcCC-CCCHHHHHHHHHHHHHHHHH
Q 043001 15 VGPDWSSKEALILGNEIAAVEADCLK-------ALSSYQKWKIISETCTALDV-PRTANQCRRKWDSLIDEYKK 80 (121)
Q Consensus 15 ~~~~Wt~~Etl~LI~~r~~~e~~~~~-------~~~~~~~W~~Ia~~m~~~G~-~Rs~~QCr~KW~nL~~~Ykk 80 (121)
|+++||.+|..+||++...+..-+.. .......|++|+..|.+.|. .||+.|++.+|.||...-|+
T Consensus 1 R~~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk~~~Kk 74 (78)
T PF13873_consen 1 RKPNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLKSKAKK 74 (78)
T ss_pred CCCCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHH
Confidence 57899999999999986554332211 22457899999999999865 89999999999999988765
No 4
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=98.77 E-value=2e-08 Score=60.03 Aligned_cols=47 Identities=28% Similarity=0.533 Sum_probs=39.4
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHhhhcCCCCCHHHHHHHHHHHH
Q 043001 17 PDWSSKEALILGNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLI 75 (121)
Q Consensus 17 ~~Wt~~Etl~LI~~r~~~e~~~~~~~~~~~~W~~Ia~~m~~~G~~Rs~~QCr~KW~nL~ 75 (121)
..||.+|...|+++...+ +...|..||+.|. -.||+.||+.+|.+|+
T Consensus 2 ~~Wt~eE~~~l~~~v~~~---------g~~~W~~Ia~~~~---~~Rt~~qc~~~~~~~~ 48 (48)
T PF00249_consen 2 GPWTEEEDEKLLEAVKKY---------GKDNWKKIAKRMP---GGRTAKQCRSRYQNLL 48 (48)
T ss_dssp -SS-HHHHHHHHHHHHHS---------TTTHHHHHHHHHS---SSSTHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHh---------CCcHHHHHHHHcC---CCCCHHHHHHHHHhhC
Confidence 469999999999998766 4447999999988 7799999999999874
No 5
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A ....
Probab=98.46 E-value=4.2e-07 Score=56.16 Aligned_cols=41 Identities=32% Similarity=0.664 Sum_probs=33.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHhhhcCCCCCHHHHHHHHHH
Q 043001 19 WSSKEALILGNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDS 73 (121)
Q Consensus 19 Wt~~Etl~LI~~r~~~e~~~~~~~~~~~~W~~Ia~~m~~~G~~Rs~~QCr~KW~n 73 (121)
||.+|...|++++..+ +..|..||+.|. .||+.||+.+|.+
T Consensus 1 WT~eEd~~L~~~~~~~----------g~~W~~Ia~~l~----~Rt~~~~~~r~~~ 41 (60)
T PF13921_consen 1 WTKEEDELLLELVKKY----------GNDWKKIAEHLG----NRTPKQCRNRWRN 41 (60)
T ss_dssp S-HHHHHHHHHHHHHH----------TS-HHHHHHHST----TS-HHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH----------CcCHHHHHHHHC----cCCHHHHHHHHHH
Confidence 9999999999987654 237999999985 7999999999998
No 6
>PLN03212 Transcription repressor MYB5; Provisional
Probab=98.41 E-value=8.6e-07 Score=69.97 Aligned_cols=50 Identities=20% Similarity=0.461 Sum_probs=41.4
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHhhhcCCCCCHHHHHHHHHHHHH
Q 043001 15 VGPDWSSKEALILGNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLID 76 (121)
Q Consensus 15 ~~~~Wt~~Etl~LI~~r~~~e~~~~~~~~~~~~W~~Ia~~m~~~G~~Rs~~QCr~KW~nL~~ 76 (121)
+...||.+|...|+++...+ ....|..||..|. ..|+++|||++|.|.+.
T Consensus 24 KRg~WT~EEDe~L~~lV~ky---------G~~nW~~IAk~~g---~gRT~KQCReRW~N~L~ 73 (249)
T PLN03212 24 KRGPWTVEEDEILVSFIKKE---------GEGRWRSLPKRAG---LLRCGKSCRLRWMNYLR 73 (249)
T ss_pred cCCCCCHHHHHHHHHHHHHh---------CcccHHHHHHhhh---cCCCcchHHHHHHHhhc
Confidence 34579999999999987655 4568999998864 67999999999998873
No 7
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=98.40 E-value=9.8e-07 Score=50.78 Aligned_cols=46 Identities=28% Similarity=0.676 Sum_probs=39.8
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHhhhcCCCCCHHHHHHHHHHHH
Q 043001 17 PDWSSKEALILGNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLI 75 (121)
Q Consensus 17 ~~Wt~~Etl~LI~~r~~~e~~~~~~~~~~~~W~~Ia~~m~~~G~~Rs~~QCr~KW~nL~ 75 (121)
..||.+|...|+.+...+ +...|..||..|. .||+.+|+.+|.++.
T Consensus 2 ~~Wt~~E~~~l~~~~~~~---------g~~~w~~Ia~~~~----~rt~~~~~~~~~~~~ 47 (49)
T smart00717 2 GEWTEEEDELLIELVKKY---------GKNNWEKIAKELP----GRTAEQCRERWNNLL 47 (49)
T ss_pred CCCCHHHHHHHHHHHHHH---------CcCCHHHHHHHcC----CCCHHHHHHHHHHHc
Confidence 469999999999987655 2268999999987 899999999999875
No 8
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=98.33 E-value=1.7e-06 Score=49.13 Aligned_cols=44 Identities=27% Similarity=0.658 Sum_probs=37.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHhhhcCCCCCHHHHHHHHHHH
Q 043001 18 DWSSKEALILGNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSL 74 (121)
Q Consensus 18 ~Wt~~Etl~LI~~r~~~e~~~~~~~~~~~~W~~Ia~~m~~~G~~Rs~~QCr~KW~nL 74 (121)
.||.+|...|+.....+ +...|..||+.|. .||+.||+.+|.++
T Consensus 1 ~Wt~eE~~~l~~~~~~~---------g~~~w~~Ia~~~~----~rs~~~~~~~~~~~ 44 (45)
T cd00167 1 PWTEEEDELLLEAVKKY---------GKNNWEKIAKELP----GRTPKQCRERWRNL 44 (45)
T ss_pred CCCHHHHHHHHHHHHHH---------CcCCHHHHHhHcC----CCCHHHHHHHHHHh
Confidence 49999999999987655 2267999999987 49999999999876
No 9
>PLN03091 hypothetical protein; Provisional
Probab=98.10 E-value=4.4e-06 Score=70.60 Aligned_cols=50 Identities=20% Similarity=0.400 Sum_probs=41.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHhhhcCCCCCHHHHHHHHHHHH
Q 043001 14 QVGPDWSSKEALILGNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLI 75 (121)
Q Consensus 14 ~~~~~Wt~~Etl~LI~~r~~~e~~~~~~~~~~~~W~~Ia~~m~~~G~~Rs~~QCr~KW~nL~ 75 (121)
.+...||.+|...|+++...+ +...|..||..| |..|+++|||++|.|.+
T Consensus 12 lrKg~WTpEEDe~L~~~V~ky---------G~~nWs~IAk~~---g~gRT~KQCRERW~NyL 61 (459)
T PLN03091 12 LRKGLWSPEEDEKLLRHITKY---------GHGCWSSVPKQA---GLQRCGKSCRLRWINYL 61 (459)
T ss_pred CcCCCCCHHHHHHHHHHHHHh---------CcCCHHHHhhhh---ccCcCcchHhHHHHhcc
Confidence 445679999999999987654 446899999875 47899999999999754
No 10
>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains.
Probab=98.06 E-value=2.8e-05 Score=51.65 Aligned_cols=66 Identities=17% Similarity=0.270 Sum_probs=54.4
Q ss_pred CCCHHHHHHHHHHHHHHHH-HHH--hhcchhhhHHHHHHHhhh-cCCCCCHHHHHHHHHHHHHHHHHhhh
Q 043001 18 DWSSKEALILGNEIAAVEA-DCL--KALSSYQKWKIISETCTA-LDVPRTANQCRRKWDSLIDEYKKIIV 83 (121)
Q Consensus 18 ~Wt~~Etl~LI~~r~~~e~-~~~--~~~~~~~~W~~Ia~~m~~-~G~~Rs~~QCr~KW~nL~~~Ykkikd 83 (121)
+||.+++..||++..+.-. ... .+.-+..-|+.|++.|.+ .|...+..||+.||..|.+.|+.++.
T Consensus 1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~~lk~~y~~~~~ 70 (96)
T PF12776_consen 1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWKTLKKDYRIWKE 70 (96)
T ss_pred CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHHHHHH
Confidence 5999999999998754422 222 233457799999999998 48899999999999999999999988
No 11
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]
Probab=97.86 E-value=1.2e-05 Score=62.69 Aligned_cols=49 Identities=16% Similarity=0.400 Sum_probs=42.4
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHhhhcCCCCCHHHHHHHHHHHHH
Q 043001 16 GPDWSSKEALILGNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLID 76 (121)
Q Consensus 16 ~~~Wt~~Etl~LI~~r~~~e~~~~~~~~~~~~W~~Ia~~m~~~G~~Rs~~QCr~KW~nL~~ 76 (121)
.+.||.+|...|++.+..+ +...|..||+.+. ..|++++||.+|-|.++
T Consensus 9 kGpWt~EED~~L~~~V~~~---------G~~~W~~i~k~~g---l~R~GKSCRlRW~NyLr 57 (238)
T KOG0048|consen 9 KGPWTQEEDLTQIRSIKSF---------GKHNGTALPKLAG---LRRCGKSCRLRWTNYLR 57 (238)
T ss_pred CCCCChHHHHHHHHHHHHh---------CCCCcchhhhhcC---CCccchHHHHHhhcccC
Confidence 4779999999999988766 5668999999865 68999999999998764
No 12
>smart00595 MADF subfamily of SANT domain.
Probab=97.66 E-value=0.0001 Score=48.43 Aligned_cols=37 Identities=22% Similarity=0.649 Sum_probs=32.4
Q ss_pred cchhhhHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHhhh
Q 043001 42 LSSYQKWKIISETCTALDVPRTANQCRRKWDSLIDEYKKIIV 83 (121)
Q Consensus 42 ~~~~~~W~~Ia~~m~~~G~~Rs~~QCr~KW~nL~~~Ykkikd 83 (121)
......|.+||..|.. |+.+|+.||.+|...|.+...
T Consensus 24 ~~r~~aW~~Ia~~l~~-----~~~~~~~kw~~LR~~y~~e~~ 60 (89)
T smart00595 24 EEKRKAWEEIAEELGL-----SVEECKKRWKNLRDRYRRELK 60 (89)
T ss_pred HHHHHHHHHHHHHHCc-----CHHHHHHHHHHHHHHHHHHHH
Confidence 3457799999999984 999999999999999998754
No 13
>PLN03212 Transcription repressor MYB5; Provisional
Probab=97.51 E-value=0.0003 Score=55.68 Aligned_cols=50 Identities=16% Similarity=0.280 Sum_probs=42.1
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHH
Q 043001 16 GPDWSSKEALILGNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLIDEYK 79 (121)
Q Consensus 16 ~~~Wt~~Etl~LI~~r~~~e~~~~~~~~~~~~W~~Ia~~m~~~G~~Rs~~QCr~KW~nL~~~Yk 79 (121)
...||.+|...||+....+ +.+|..||..|- .||..||+.+|.++++...
T Consensus 78 kgpWT~EED~lLlel~~~~----------GnKWs~IAk~Lp----GRTDnqIKNRWns~LrK~l 127 (249)
T PLN03212 78 RGGITSDEEDLILRLHRLL----------GNRWSLIAGRIP----GRTDNEIKNYWNTHLRKKL 127 (249)
T ss_pred cCCCChHHHHHHHHHHHhc----------cccHHHHHhhcC----CCCHHHHHHHHHHHHhHHH
Confidence 4579999999999876544 468999999996 7999999999999887653
No 14
>PLN03091 hypothetical protein; Provisional
Probab=97.37 E-value=0.00057 Score=58.04 Aligned_cols=51 Identities=20% Similarity=0.348 Sum_probs=43.7
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHH
Q 043001 16 GPDWSSKEALILGNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLIDEYKK 80 (121)
Q Consensus 16 ~~~Wt~~Etl~LI~~r~~~e~~~~~~~~~~~~W~~Ia~~m~~~G~~Rs~~QCr~KW~nL~~~Ykk 80 (121)
...||.+|...||+....+ +.+|..||..|- .||..||+.+|..+++.+.+
T Consensus 67 KgpWT~EED~lLLeL~k~~----------GnKWskIAk~LP----GRTDnqIKNRWnslLKKklr 117 (459)
T PLN03091 67 RGTFSQQEENLIIELHAVL----------GNRWSQIAAQLP----GRTDNEIKNLWNSCLKKKLR 117 (459)
T ss_pred CCCCCHHHHHHHHHHHHHh----------CcchHHHHHhcC----CCCHHHHHHHHHHHHHHHHH
Confidence 4579999999999987644 458999999986 89999999999999887654
No 15
>PF10545 MADF_DNA_bdg: Alcohol dehydrogenase transcription factor Myb/SANT-like; InterPro: IPR006578 The MADF (myb/SANT-like domain in Adf-1) domain is an approximately 80-amino-acid module that directs sequence specific DNA binding to a site consisting of multiple tri-nucleotide repeats. The MADF domain is found in one or more copies in eukaryotic and viral proteins and is often associated with the BESS domain []. MADF is related to the Myb DNA-binding domain (IPR001005 from INTERPRO). The retroviral oncogene v-myb, and its cellular counterpart c-myb, are nuclear DNA-binding proteins that specifically recognise the sequence YAAC(G/T)G. It is likely that the MADF domain is more closely related to the myb/SANT domain than it is to other HTH domains. Some proteins known to contain a MADF domain are listed below: Drosophila Adf-1, a transcription factor first identified on the basis of its interaction with the alcohol dehydrogenase promoter but that binds the promoters of a diverse group of genes []. Drosophila Dorsal-interacting protein 3 (Dip3), which functions both as an activator to bind DNA in a sequence specific manner and a coactivator to stimulate synergistic activation by Dorsal and Twist []. Drosophila Stonewall (Stwl), a putative transcription factor required for maintenance of female germline stem cells as well as oocyte differentiation.
Probab=97.24 E-value=0.00053 Score=43.88 Aligned_cols=39 Identities=18% Similarity=0.542 Sum_probs=33.6
Q ss_pred cchhhhHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHhhh
Q 043001 42 LSSYQKWKIISETCTALDVPRTANQCRRKWDSLIDEYKKIIV 83 (121)
Q Consensus 42 ~~~~~~W~~Ia~~m~~~G~~Rs~~QCr~KW~nL~~~Ykkikd 83 (121)
......|..||..|. ..-++.+|+.+|.+|...|...+.
T Consensus 23 ~~r~~aw~~Ia~~l~---~~~~~~~~~~~w~~Lr~~y~~~~~ 61 (85)
T PF10545_consen 23 QLREEAWQEIARELG---KEFSVDDCKKRWKNLRDRYRRELK 61 (85)
T ss_pred HHHHHHHHHHHHHHc---cchhHHHHHHHHHHHHHHHHHHHH
Confidence 346889999999994 556799999999999999999875
No 16
>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]
Probab=96.61 E-value=0.0049 Score=53.29 Aligned_cols=50 Identities=22% Similarity=0.493 Sum_probs=42.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHhhhcCCCCCHHHHHHHHHHHH
Q 043001 12 RSQVGPDWSSKEALILGNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLI 75 (121)
Q Consensus 12 r~~~~~~Wt~~Etl~LI~~r~~~e~~~~~~~~~~~~W~~Ia~~m~~~G~~Rs~~QCr~KW~nL~ 75 (121)
.....+.||.+||+.|++..-.+ .+.|..||..+. .||..||-.|+-.|=
T Consensus 249 ~~~~~~~WT~qE~lLLLE~ie~y----------~ddW~kVa~hVg----~ks~eqCI~kFL~LP 298 (506)
T KOG1279|consen 249 GESARPNWTEQETLLLLEAIEMY----------GDDWNKVADHVG----TKSQEQCILKFLRLP 298 (506)
T ss_pred cccCCCCccHHHHHHHHHHHHHh----------cccHHHHHhccC----CCCHHHHHHHHHhcC
Confidence 45678899999999999986433 679999999988 899999999997663
No 17
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=96.20 E-value=0.014 Score=43.69 Aligned_cols=59 Identities=17% Similarity=0.465 Sum_probs=48.1
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHhhhcCCCCCHHHHHHHHHHHHH-HHHHh
Q 043001 15 VGPDWSSKEALILGNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLID-EYKKI 81 (121)
Q Consensus 15 ~~~~Wt~~Etl~LI~~r~~~e~~~~~~~~~~~~W~~Ia~~m~~~G~~Rs~~QCr~KW~nL~~-~Ykki 81 (121)
|.--||.+|.++|.+.. -...+++.+--..+++|++.|. ||+.-|.=+|.+.++ .|..-
T Consensus 3 RQDAWT~eeDlLLAEtV---LrhIReG~TQL~AFeEvg~~L~-----RTsAACGFRWNs~VRkqY~~~ 62 (161)
T TIGR02894 3 RQDAWTHEEDLLLAETV---LRHIREGSTQLSAFEEVGRALN-----RTAAACGFRWNAYVRKQYEEA 62 (161)
T ss_pred cccccccHHHHHHHHHH---HHHHhcchHHHHHHHHHHHHHc-----ccHHHhcchHHHHHHHHHHHH
Confidence 45679999999999863 4556777777789999999976 999999999998775 46653
No 18
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]
Probab=95.93 E-value=0.015 Score=51.18 Aligned_cols=59 Identities=24% Similarity=0.356 Sum_probs=44.9
Q ss_pred CCCCCHHHHHHHHHHHHHHHH-H--H---------Hhhcc----hhhhHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHH
Q 043001 16 GPDWSSKEALILGNEIAAVEA-D--C---------LKALS----SYQKWKIISETCTALDVPRTANQCRRKWDSLIDEY 78 (121)
Q Consensus 16 ~~~Wt~~Etl~LI~~r~~~e~-~--~---------~~~~~----~~~~W~~Ia~~m~~~G~~Rs~~QCr~KW~nL~~~Y 78 (121)
...||.+|...||++..++-. . + +.... ..-.|-.||+.|. .|+..|||.||..|...+
T Consensus 436 r~~Ws~eEe~~Llk~V~~~~~~~~q~q~~n~~~~~q~sp~s~~~d~I~Wt~vse~~~----TR~~~qCr~Kw~kl~~~~ 510 (607)
T KOG0051|consen 436 RGAWSIEEEEKLLKTVNEMIREALQPQASNTDTGLQESPESTLKDDINWTLVSEMLG----TRSRIQCRYKWYKLTTSP 510 (607)
T ss_pred cCcchHHHHHHHHHHHHHHHHHhhcccccccchhhhcCccccccCCcchhhhhHhhc----CCCcchHHHHHHHHHhhH
Confidence 467999999999998875532 1 2 11222 3458999999666 899999999999998765
No 19
>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]
Probab=95.56 E-value=0.026 Score=48.56 Aligned_cols=53 Identities=23% Similarity=0.362 Sum_probs=43.1
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHh
Q 043001 15 VGPDWSSKEALILGNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLIDEYKKI 81 (121)
Q Consensus 15 ~~~~Wt~~Etl~LI~~r~~~e~~~~~~~~~~~~W~~Ia~~m~~~G~~Rs~~QCr~KW~nL~~~Ykki 81 (121)
+..+|+.+|++.|++...+. ++-|..||.+.. .+|..||--+|-+|=..=+-+
T Consensus 278 ~dk~WS~qE~~LLLEGIe~y----------gDdW~kVA~HVg----tKt~EqCIl~FL~LPieD~~l 330 (531)
T COG5259 278 RDKNWSRQELLLLLEGIEMY----------GDDWDKVARHVG----TKTKEQCILHFLQLPIEDNYL 330 (531)
T ss_pred ccccccHHHHHHHHHHHHHh----------hhhHHHHHHHhC----CCCHHHHHHHHHcCCcchhhh
Confidence 45689999999999987544 678999999987 899999999998886443333
No 20
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=94.59 E-value=0.13 Score=31.99 Aligned_cols=44 Identities=18% Similarity=0.198 Sum_probs=34.6
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhhcchhhhH---HHHHHHhhhcCCCC-CHHHHHHHH
Q 043001 16 GPDWSSKEALILGNEIAAVEADCLKALSSYQKW---KIISETCTALDVPR-TANQCRRKW 71 (121)
Q Consensus 16 ~~~Wt~~Etl~LI~~r~~~e~~~~~~~~~~~~W---~~Ia~~m~~~G~~R-s~~QCr~KW 71 (121)
.-.||.+|-..++++.... +...| +.|++.|. ..+ |..||++.-
T Consensus 3 r~~WT~eeh~~Fl~ai~~~---------G~g~~a~pk~I~~~~~---~~~lT~~qV~SH~ 50 (57)
T TIGR01557 3 RVVWTEDLHDRFLQAVQKL---------GGPDWATPKRILELMV---VDGLTRDQVASHL 50 (57)
T ss_pred CCCCCHHHHHHHHHHHHHh---------CCCcccchHHHHHHcC---CCCCCHHHHHHHH
Confidence 3569999999999987655 44469 99998887 566 999998753
No 21
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]
Probab=94.08 E-value=0.13 Score=46.26 Aligned_cols=53 Identities=21% Similarity=0.397 Sum_probs=43.0
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHH
Q 043001 15 VGPDWSSKEALILGNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLIDEYK 79 (121)
Q Consensus 15 ~~~~Wt~~Etl~LI~~r~~~e~~~~~~~~~~~~W~~Ia~~m~~~G~~Rs~~QCr~KW~nL~~~Yk 79 (121)
+...|+.+|...|.++=.+. +..-|+.||..|. -+||+-||-.||..-++..+
T Consensus 252 nk~~WS~EE~E~L~AiA~A~---------~~~~W~~IA~~Lg---t~RS~yQC~~kF~t~~~~L~ 304 (939)
T KOG0049|consen 252 NKEHWSNEEVEKLKALAEAP---------KFVSWPMIALNLG---TNRSSYQCMEKFKTEVSQLS 304 (939)
T ss_pred chhccChHHHHHHHHHHhcc---------ccccHHHHHHHhC---CCcchHHHHHHHHHHHHHHH
Confidence 35679999999999885444 6789999999865 78999999999987765544
No 22
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=93.80 E-value=0.22 Score=37.55 Aligned_cols=58 Identities=16% Similarity=0.436 Sum_probs=44.0
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHhhhcCCCCCHHHHHHHHHHHHH-HHHH
Q 043001 15 VGPDWSSKEALILGNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLID-EYKK 80 (121)
Q Consensus 15 ~~~~Wt~~Etl~LI~~r~~~e~~~~~~~~~~~~W~~Ia~~m~~~G~~Rs~~QCr~KW~nL~~-~Ykk 80 (121)
+..-||.++.+.|-+..- ...+++...-...++++..|. ||+.+|.-+|.+.++ .|..
T Consensus 4 rqdawt~e~d~llae~vl---~~i~eg~tql~afe~~g~~L~-----rt~aac~fRwNs~vrk~Yee 62 (170)
T PRK13923 4 RQDAWTQERDGLLAEVVL---RHIREGGTQLKAFEEVGDALK-----RTAAACGFRWNSVVRKQYQE 62 (170)
T ss_pred hhhhhhhHHHHHHHHHHH---HHHhccchHHHHHHHHHHHHh-----hhHHHHHhHHHHHHHHHHHH
Confidence 456799999999977643 335556666778999999987 999999999975544 4544
No 23
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=93.71 E-value=0.19 Score=42.86 Aligned_cols=44 Identities=18% Similarity=0.644 Sum_probs=36.6
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHhhhcCCCCCHHHHHHHH
Q 043001 15 VGPDWSSKEALILGNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKW 71 (121)
Q Consensus 15 ~~~~Wt~~Etl~LI~~r~~~e~~~~~~~~~~~~W~~Ia~~m~~~G~~Rs~~QCr~KW 71 (121)
..+.||.+|-..||++.... +.-.|++||+.+. .+|..+|++-+
T Consensus 71 ~~~~WtadEEilLLea~~t~---------G~GNW~dIA~hIG----tKtkeeck~hy 114 (438)
T KOG0457|consen 71 LDPSWTADEEILLLEAAETY---------GFGNWQDIADHIG----TKTKEECKEHY 114 (438)
T ss_pred CCCCCChHHHHHHHHHHHHh---------CCCcHHHHHHHHc----ccchHHHHHHH
Confidence 35789999999999975433 6679999999998 89999998743
No 24
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]
Probab=91.67 E-value=0.4 Score=43.25 Aligned_cols=53 Identities=17% Similarity=0.505 Sum_probs=42.8
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHH
Q 043001 15 VGPDWSSKEALILGNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLIDEYKK 80 (121)
Q Consensus 15 ~~~~Wt~~Etl~LI~~r~~~e~~~~~~~~~~~~W~~Ia~~m~~~G~~Rs~~QCr~KW~nL~~~Ykk 80 (121)
..+.||.+|...|+++..++ ++.-|-.|-+..= +||..|||++..|.+..-.|
T Consensus 359 khg~wt~~ED~~L~~AV~~Y---------g~kdw~k~R~~vP----nRSdsQcR~RY~nvL~~s~K 411 (939)
T KOG0049|consen 359 KHGRWTDQEDVLLVCAVSRY---------GAKDWAKVRQAVP----NRSDSQCRERYTNVLNRSAK 411 (939)
T ss_pred cCCCCCCHHHHHHHHHHHHh---------CccchhhHHHhcC----CccHHHHHHHHHHHHHHhhc
Confidence 35679999999999998777 6677777766654 89999999999988865444
No 25
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]
Probab=91.37 E-value=0.38 Score=42.60 Aligned_cols=62 Identities=21% Similarity=0.378 Sum_probs=44.5
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHhhhCCCCCCCChhhh
Q 043001 16 GPDWSSKEALILGNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLIDEYKKIIVRSRTFPKSQTQA 95 (121)
Q Consensus 16 ~~~Wt~~Etl~LI~~r~~~e~~~~~~~~~~~~W~~Ia~~m~~~G~~Rs~~QCr~KW~nL~~~Ykkikd~~~syw~~~~~r 95 (121)
.+.||.+|+..|-....++ +..|.+|++.|. |.+..|+.+|.++..-=.+ ....-|.-.++.
T Consensus 384 rg~wt~ee~eeL~~l~~~~----------g~~W~~Ig~~lg-----r~P~~crd~wr~~~~~g~~---~~r~~Ws~eEe~ 445 (607)
T KOG0051|consen 384 RGKWTPEEEEELKKLVVEH----------GNDWKEIGKALG-----RMPMDCRDRWRQYVKCGSK---RNRGAWSIEEEE 445 (607)
T ss_pred cCCCCcchHHHHHHHHHHh----------cccHHHHHHHHc-----cCcHHHHHHHHHhhccccc---cccCcchHHHHH
Confidence 4679999998887765433 668999999987 9999999999966532111 355667733333
No 26
>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=89.66 E-value=0.53 Score=41.26 Aligned_cols=47 Identities=23% Similarity=0.553 Sum_probs=37.3
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHhhhcCCCCCHHHHHHHHHHH
Q 043001 15 VGPDWSSKEALILGNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSL 74 (121)
Q Consensus 15 ~~~~Wt~~Etl~LI~~r~~~e~~~~~~~~~~~~W~~Ia~~m~~~G~~Rs~~QCr~KW~nL 74 (121)
.++.|+..|..+|=... .+-+.+.|..||..+. .-|+.||+-+|+-.
T Consensus 6 kggvwrntEdeilkaav---------~kyg~nqws~i~sll~----~kt~rqC~~rw~e~ 52 (617)
T KOG0050|consen 6 KGGVWRNTEDEVLKAAV---------MKYGKNQWSRIASLLN----RKTARQCKARWEEW 52 (617)
T ss_pred ecceecccHHHHHHHHH---------HHcchHHHHHHHHHHh----hcchhHHHHHHHHH
Confidence 35679988888776553 2347889999999998 68999999999843
No 27
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]
Probab=88.44 E-value=1.9 Score=33.45 Aligned_cols=45 Identities=20% Similarity=0.417 Sum_probs=37.9
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHhhhcCCCCCHHHHHHHHHHH
Q 043001 16 GPDWSSKEALILGNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSL 74 (121)
Q Consensus 16 ~~~Wt~~Etl~LI~~r~~~e~~~~~~~~~~~~W~~Ia~~m~~~G~~Rs~~QCr~KW~nL 74 (121)
.+.||.+|..+||++-+.+ +.+|..||..|- -||...-+--|...
T Consensus 62 rg~fT~eEe~~Ii~lH~~~----------GNrWs~IA~~LP----GRTDNeIKN~Wnt~ 106 (238)
T KOG0048|consen 62 RGNFSDEEEDLIIKLHALL----------GNRWSLIAGRLP----GRTDNEVKNHWNTH 106 (238)
T ss_pred CCCCCHHHHHHHHHHHHHH----------CcHHHHHHhhCC----CcCHHHHHHHHHHH
Confidence 4679999999999986544 567999999998 79999998888744
No 28
>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=78.28 E-value=3.6 Score=36.29 Aligned_cols=50 Identities=28% Similarity=0.500 Sum_probs=38.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHhhh
Q 043001 19 WSSKEALILGNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLIDEYKKIIV 83 (121)
Q Consensus 19 Wt~~Etl~LI~~r~~~e~~~~~~~~~~~~W~~Ia~~m~~~G~~Rs~~QCr~KW~nL~~~Ykkikd 83 (121)
|+++|...||.+ ++.-..-|.-|+.-|. |++.||-++..+|+-.|-....
T Consensus 62 ws~eederlLhl----------akl~p~qwrtIa~i~g-----r~~~qc~eRy~~ll~~~~s~~~ 111 (617)
T KOG0050|consen 62 WSREEDERLLHL----------AKLEPTQWRTIADIMG-----RTSQQCLERYNNLLDVYVSYHY 111 (617)
T ss_pred hhhhHHHHHHHH----------HHhcCCccchHHHHhh-----hhHHHHHHHHHHHHHHHHhhhc
Confidence 666666555554 2234678999999987 9999999999999988876654
No 29
>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]
Probab=76.97 E-value=1.7 Score=37.96 Aligned_cols=48 Identities=17% Similarity=0.434 Sum_probs=37.6
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHhhhcCCCCCHHHHHHHHHHHHH
Q 043001 16 GPDWSSKEALILGNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLID 76 (121)
Q Consensus 16 ~~~Wt~~Etl~LI~~r~~~e~~~~~~~~~~~~W~~Ia~~m~~~G~~Rs~~QCr~KW~nL~~ 76 (121)
.+.|++.|.-.|..+..+. ....|..||..+. .++++||+.+|.+...
T Consensus 20 ~gsw~~~EDe~l~~~vk~l---------~~nnws~vas~~~----~~~~kq~~~rw~~~ln 67 (512)
T COG5147 20 GGSWKRTEDEDLKALVKKL---------GPNNWSKVASLLI----SSTGKQSSNRWNNHLN 67 (512)
T ss_pred CCCCCCcchhHHHHHHhhc---------ccccHHHHHHHhc----ccccccccchhhhhhc
Confidence 4579999998888876433 4445999999988 3999999999965443
No 30
>PF04504 DUF573: Protein of unknown function, DUF573; InterPro: IPR007592 This is a family of uncharacterised proteins.
Probab=76.39 E-value=21 Score=24.18 Aligned_cols=65 Identities=14% Similarity=0.220 Sum_probs=44.0
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhh--cchhhhHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHhhh
Q 043001 16 GPDWSSKEALILGNEIAAVEADCLKA--LSSYQKWKIISETCTALDVPRTANQCRRKWDSLIDEYKKIIV 83 (121)
Q Consensus 16 ~~~Wt~~Etl~LI~~r~~~e~~~~~~--~~~~~~W~~Ia~~m~~~G~~Rs~~QCr~KW~nL~~~Ykkikd 83 (121)
...||.++-..|++...+....-... .-.....+.|...|. ++-|..|=.+|-..|.+.|..+..
T Consensus 4 qR~WS~eDEi~iL~gl~~~~~~~G~~p~~d~~~f~~~vk~~l~---~~~s~~Ql~~KirrLK~Ky~~~~~ 70 (98)
T PF04504_consen 4 QRLWSEEDEIVILQGLIDFRAKTGKSPQPDMNAFYDFVKGSLS---FDVSKNQLYDKIRRLKKKYRNAVK 70 (98)
T ss_pred cCCCCchHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHcc---CCCCHHHHHHHHHHHHHHHHHHhh
Confidence 34699988888887654442211111 112445666666654 677999999999999999998765
No 31
>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]
Probab=73.69 E-value=4.6 Score=35.33 Aligned_cols=51 Identities=22% Similarity=0.404 Sum_probs=41.4
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHH
Q 043001 16 GPDWSSKEALILGNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLIDEYKK 80 (121)
Q Consensus 16 ~~~Wt~~Etl~LI~~r~~~e~~~~~~~~~~~~W~~Ia~~m~~~G~~Rs~~QCr~KW~nL~~~Ykk 80 (121)
...|+.+|...||.+-.+. ...|..||..+- .|++.||-.+|-++...+-+
T Consensus 72 ~~~~~~eed~~li~l~~~~----------~~~wstia~~~d----~rt~~~~~ery~~~~~~~~s 122 (512)
T COG5147 72 KKNWSEEEDEQLIDLDKEL----------GTQWSTIADYKD----RRTAQQCVERYVNTLEDLSS 122 (512)
T ss_pred cccccHHHHHHHHHHHHhc----------CchhhhhccccC----ccchHHHHHHHHHHhhhhhc
Confidence 4578999999999874333 345999999865 49999999999999988887
No 32
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=71.60 E-value=18 Score=30.34 Aligned_cols=42 Identities=17% Similarity=0.423 Sum_probs=33.7
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHhhhcCCCCCHHHHHHH
Q 043001 16 GPDWSSKEALILGNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRK 70 (121)
Q Consensus 16 ~~~Wt~~Etl~LI~~r~~~e~~~~~~~~~~~~W~~Ia~~m~~~G~~Rs~~QCr~K 70 (121)
.+.|+-.|-+.||+.-.-. +--.|+.||++.. .|+...|++.
T Consensus 63 ~e~WgadEEllli~~~~Tl---------GlGNW~dIadyiG----sr~kee~k~H 104 (432)
T COG5114 63 EEGWGADEELLLIECLDTL---------GLGNWEDIADYIG----SRAKEEIKSH 104 (432)
T ss_pred CCCcCchHHHHHHHHHHhc---------CCCcHHHHHHHHh----hhhhHHHHHH
Confidence 4689999999999863222 4458999999987 7999999874
No 33
>cd01187 INT_SG4 INT_SG4, DNA breaking-rejoining enzymes, integrase/recombinases subgroup 4, N- and C-terminal domains. The CD contains mainly predicted bacterial integrase/recombinases for which not much biochemical characterization is available.
Probab=66.70 E-value=12 Score=28.52 Aligned_cols=86 Identities=8% Similarity=0.037 Sum_probs=56.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHhhhCCCCCCC-C-hhhh
Q 043001 18 DWSSKEALILGNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLIDEYKKIIVRSRTFPK-S-QTQA 95 (121)
Q Consensus 18 ~Wt~~Etl~LI~~r~~~e~~~~~~~~~~~~W~~Ia~~m~~~G~~Rs~~QCr~KW~nL~~~Ykkikd~~~syw~-~-~~~r 95 (121)
.||.+|+..|++.....+.. .......+..|...|...|. |...-|.-+|+.+.- .+ .+|. . ..-+
T Consensus 101 ~lt~~e~~~l~~~~~~~~~~---~~~~~~~~~~~i~ll~~tGl-R~~E~~~L~~~did~-----~~---~~i~i~~~K~~ 168 (299)
T cd01187 101 IYTDEEIQRLLAAALQLPPT---SGLRPWTYRTLFGLLAVTGL-RLGEALRLRLSDVDL-----DS---GILTVRDSKFG 168 (299)
T ss_pred cCCHHHHHHHHHHHHhCCCC---CCchhhHHHHHHHHHHHhCC-cHHHHHhCcHHhcCC-----CC---CeEEEEecCCC
Confidence 49999999999864322110 00123367788889999998 999999999987631 11 1333 2 2233
Q ss_pred hhcCCCCCCcHHHHHHHHHHhh
Q 043001 96 HTDCFPPNFDRELFKAIHDFVM 117 (121)
Q Consensus 96 k~~~LP~~fd~e~f~~ld~~~~ 117 (121)
+...+| ++.++.++|.+|+.
T Consensus 169 ~~r~vp--l~~~l~~~l~~~~~ 188 (299)
T cd01187 169 KSRLVP--LHASTRAALRDYLA 188 (299)
T ss_pred CccEEe--CCHHHHHHHHHHHH
Confidence 445566 55889999988864
No 34
>PF09356 Phage_BR0599: Phage conserved hypothetical protein BR0599; InterPro: IPR018964 This entry describes the C-terminal region of a family of proteins found almost exclusively in phage or in prophage regions of bacterial genomes, including the phage-like Rhodobacter capsulatus (Rhodopseudomonas capsulata) gene transfer agent, which packages DNA. An apparent exception is Wolbachia pipientis wMel, a bacterial endosymbiont of the fruit fly, which has several candidate phage-related genes physically separate from obvious prophage regions.
Probab=59.49 E-value=4.2 Score=26.73 Aligned_cols=19 Identities=21% Similarity=0.510 Sum_probs=16.9
Q ss_pred cCCCCCHHHHHHHHHHHHH
Q 043001 58 LDVPRTANQCRRKWDSLID 76 (121)
Q Consensus 58 ~G~~Rs~~QCr~KW~nL~~ 76 (121)
-|.+++...|+.|+.|+++
T Consensus 51 ~GCDkt~~tC~~kF~N~~N 69 (80)
T PF09356_consen 51 PGCDKTFATCRAKFNNALN 69 (80)
T ss_pred eCCCCCHHHHHHHhCCccc
Confidence 4889999999999999864
No 35
>KOG3326 consensus Uncharacterized conserved protein [Function unknown]
Probab=58.31 E-value=21 Score=26.53 Aligned_cols=43 Identities=26% Similarity=0.461 Sum_probs=32.7
Q ss_pred HHHHHHHHhhhCC-----CCCCCChhhhhhcCCCCCCcH-HHHHHHHHHhhcc
Q 043001 73 SLIDEYKKIIVRS-----RTFPKSQTQAHTDCFPPNFDR-ELFKAIHDFVMSK 119 (121)
Q Consensus 73 nL~~~Ykkikd~~-----~syw~~~~~rk~~~LP~~fd~-e~f~~ld~~~~~~ 119 (121)
+.++.|-++-++. --||.+. ....|..|+- +||.+|.+|+..+
T Consensus 93 ~~l~~YD~LiN~~~~dWDi~YWaTe----~kp~Pe~~~s~~V~~~L~e~v~n~ 141 (154)
T KOG3326|consen 93 EQLKEYDQLINEESNDWDIYYWATE----TKPPPEKVESSEVFKLLKEFVKNK 141 (154)
T ss_pred HHHHHHHHHhcCCcCCchhhhhhcc----CCCCchhhhhHHHHHHHHHHHHhh
Confidence 4567788877754 3466632 5678888998 9999999999887
No 36
>PF05427 FIBP: Acidic fibroblast growth factor binding (FIBP) ; InterPro: IPR008614 Acidic fibroblast growth factor (aFGF) intracellular binding protein (FIBP) is a protein found mainly in the nucleus that is thought to be involved in the intracellular function of aFGF [].; GO: 0017134 fibroblast growth factor binding
Probab=51.54 E-value=49 Score=27.84 Aligned_cols=59 Identities=19% Similarity=0.290 Sum_probs=40.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHh-----hcc--hhhhHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHhhh
Q 043001 20 SSKEALILGNEIAAVEADCLK-----ALS--SYQKWKIISETCTALDVPRTANQCRRKWDSLIDEYKKIIV 83 (121)
Q Consensus 20 t~~Etl~LI~~r~~~e~~~~~-----~~~--~~~~W~~Ia~~m~~~G~~Rs~~QCr~KW~nL~~~Ykkikd 83 (121)
+++--..||+.+=+.+..+.+ .++ ...-=.+||++.. .+.+.|++.|+|+++-||-|.|
T Consensus 84 ~p~~q~~LIe~YY~fDd~v~ReilGkKLs~~~rKdLdevsekt~-----i~l~ScrRQfDN~kri~k~ved 149 (361)
T PF05427_consen 84 PPSTQQLLIERYYSFDDVVIREILGKKLSSRTRKDLDEVSEKTG-----IRLKSCRRQFDNLKRIFKAVED 149 (361)
T ss_pred CHHHHHHHHHHHhhhhHHHHHHHHhhhhcccccccHHHHHHHhC-----CchhhhhhhhhcHHHHHHHHHh
Confidence 344455677765444444332 122 2334678998865 7889999999999999999988
No 37
>PF07750 GcrA: GcrA cell cycle regulator; InterPro: IPR011681 GcrA, together with CtrA (see IPR001789 from INTERPRO and IPR001867 from INTERPRO), form a master cell cycle regulator. These bacterial regulators are involved in controlling the progression and asymmetric polar morphogenesis []. During this process, there are temporal and spatial variations in the concentrations of GcrA and CtrA. The variation in concentration produces time and space dependent transcriptional regulation of modular functions that implement cell-cycle processes []. More specifically, GcrA acts as an activator of components of the replisome and the segregation machinery [].
Probab=49.96 E-value=29 Score=25.69 Aligned_cols=39 Identities=21% Similarity=0.205 Sum_probs=26.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHhhhcCCCCCHHHHH
Q 043001 17 PDWSSKEALILGNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCR 68 (121)
Q Consensus 17 ~~Wt~~Etl~LI~~r~~~e~~~~~~~~~~~~W~~Ia~~m~~~G~~Rs~~QCr 68 (121)
+.||++.+..|-+++. .++ --.+||..|. |+.|++-.=+
T Consensus 1 M~Wtde~~~~L~~lw~-------~G~----SasqIA~~lg--~vsRnAViGk 39 (162)
T PF07750_consen 1 MSWTDERVERLRKLWA-------EGL----SASQIARQLG--GVSRNAVIGK 39 (162)
T ss_pred CCCCHHHHHHHHHHHH-------cCC----CHHHHHHHhC--Ccchhhhhhh
Confidence 4699999998887764 222 3346777776 6888776543
No 38
>PF10929 DUF2811: Protein of unknown function (DUF2811); InterPro: IPR021231 This is a bacterial family of uncharacterised proteins.
Probab=49.26 E-value=18 Score=22.57 Aligned_cols=19 Identities=26% Similarity=0.583 Sum_probs=16.2
Q ss_pred CCcHHHHHHHHHHhhccCC
Q 043001 103 NFDRELFKAIHDFVMSKDN 121 (121)
Q Consensus 103 ~fd~e~f~~ld~~~~~~~~ 121 (121)
.+..+++++|..|+..+||
T Consensus 5 eiPe~L~~~m~~fie~hP~ 23 (57)
T PF10929_consen 5 EIPEDLHQAMKDFIETHPN 23 (57)
T ss_pred cccHHHHHHHHHHHHcCCC
Confidence 3458999999999999986
No 39
>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif. The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.
Probab=48.74 E-value=16 Score=23.13 Aligned_cols=53 Identities=23% Similarity=0.374 Sum_probs=30.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHh
Q 043001 18 DWSSKEALILGNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLIDEYKKI 81 (121)
Q Consensus 18 ~Wt~~Etl~LI~~r~~~e~~~~~~~~~~~~W~~Ia~~m~~~G~~Rs~~QCr~KW~nL~~~Ykki 81 (121)
.-|.+|..+|+.-..+.+... ...++..+|++.++.- . ++.-|.++...|.|.
T Consensus 4 ~fT~edD~~l~~~v~~~~~~~-~~~~Gn~iwk~le~~~----~------t~HtwQSwR~Ry~K~ 56 (65)
T PF08914_consen 4 PFTEEDDAALLDYVKENERQG-GSVSGNKIWKELEEKH----P------TRHTWQSWRDRYLKH 56 (65)
T ss_dssp ---HHHHHHHHHHHHHT--ST-TTTTSSHHHHHHHHS-----S------SS--SHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhccCC-CCCchHHHHHHHHHHc----C------CCCCHHHHHHHHHHH
Confidence 468999999999865443322 2345678999998763 2 245566677777553
No 40
>TIGR01615 A_thal_3542 uncharacterized plant-specific domain TIGR01615. of a number of uncharacterized plant proteins. The domain is strongly conserved (greater than 30 % sequence identity between most pairs of members) but flanked by highly divergent regions including stretches of low-complexity sequence.
Probab=44.54 E-value=3.5 Score=29.91 Aligned_cols=23 Identities=35% Similarity=0.619 Sum_probs=19.0
Q ss_pred HHHHHhhhcCCCCCHHHHHHHHHHH
Q 043001 50 IISETCTALDVPRTANQCRRKWDSL 74 (121)
Q Consensus 50 ~Ia~~m~~~G~~Rs~~QCr~KW~nL 74 (121)
.|+..|+..||+ +.-|++||++-
T Consensus 3 ~v~~~Lr~~Gy~--AaiCkS~W~~s 25 (131)
T TIGR01615 3 IVMSLLRSLGYD--AAICKSKWDSS 25 (131)
T ss_pred hHHHHHHHCCCC--eeeEEeecCCC
Confidence 688999999995 55599999854
No 41
>KOG4167 consensus Predicted DNA-binding protein, contains SANT and ELM2 domains [Transcription]
Probab=42.89 E-value=58 Score=30.23 Aligned_cols=54 Identities=17% Similarity=0.369 Sum_probs=37.5
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHhhhcCCCCCHHHHHH---HHHHHHHH-HHHhhh
Q 043001 16 GPDWSSKEALILGNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRR---KWDSLIDE-YKKIIV 83 (121)
Q Consensus 16 ~~~Wt~~Etl~LI~~r~~~e~~~~~~~~~~~~W~~Ia~~m~~~G~~Rs~~QCr~---KW~nL~~~-Ykkikd 83 (121)
+-.||..|...+-.+.-.++.+| ..|+..+. ..|..||-+ -|+.+.+. ||+|.|
T Consensus 619 Sd~WTp~E~~lF~kA~y~~~KDF----------~~v~km~~----~KtVaqCVeyYYtWKK~~~~~~~~~~d 676 (907)
T KOG4167|consen 619 SDKWTPLERKLFNKALYTYSKDF----------IFVQKMVK----SKTVAQCVEYYYTWKKIMRLGRKIIDD 676 (907)
T ss_pred cccccHHHHHHHHHHHHHhcccH----------HHHHHHhc----cccHHHHHHHHHHHHHhccchhhhHhh
Confidence 34699999999988877676665 33444444 577888865 57766654 666666
No 42
>PF07878 DUF1662: Protein of unknown function (DUF1662); InterPro: IPR012869 The proteins in this family have not been characterised, but contain a ribbon-helix-helix domain, making them a family of putative repressors.
Probab=41.54 E-value=21 Score=22.03 Aligned_cols=28 Identities=11% Similarity=0.159 Sum_probs=22.2
Q ss_pred HHHHHHhhcchhhhHHHHHHHhhhcCCCC
Q 043001 34 VEADCLKALSSYQKWKIISETCTALDVPR 62 (121)
Q Consensus 34 ~e~~~~~~~~~~~~W~~Ia~~m~~~G~~R 62 (121)
.+..+.+..++ +++..|++.|.+.|+.|
T Consensus 24 la~~~~r~~~~-~l~~~ic~~Li~r~Isr 51 (55)
T PF07878_consen 24 LAEQENRTVSN-PLFTWICDFLINRSISR 51 (55)
T ss_pred HHHHHcCcccc-hhHHHHHHHHHHHHHHH
Confidence 34556667777 99999999999888765
No 43
>smart00576 BTP Bromodomain transcription factors and PHD domain containing proteins. subdomain of archael histone-like transcription factors
Probab=40.70 E-value=50 Score=21.04 Aligned_cols=32 Identities=3% Similarity=0.119 Sum_probs=28.2
Q ss_pred HHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHH
Q 043001 49 KIISETCTALDVPRTANQCRRKWDSLIDEYKK 80 (121)
Q Consensus 49 ~~Ia~~m~~~G~~Rs~~QCr~KW~nL~~~Ykk 80 (121)
..|+.-|...||++....+-+....+...|-.
T Consensus 10 ~~Vaqil~~~Gf~~~~~sale~ltdi~~~yl~ 41 (77)
T smart00576 10 IAVAQILESAGFDSFQESALETLTDILQSYIQ 41 (77)
T ss_pred HHHHHHHHHcCccccCHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999988888754
No 44
>PRK04387 hypothetical protein; Provisional
Probab=40.26 E-value=75 Score=21.58 Aligned_cols=23 Identities=30% Similarity=0.423 Sum_probs=18.3
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHH
Q 043001 16 GPDWSSKEALILGNEIAAVEADC 38 (121)
Q Consensus 16 ~~~Wt~~Etl~LI~~r~~~e~~~ 38 (121)
.+.||.+|+...|+....+|.-.
T Consensus 8 d~dWsteEii~Vi~F~~~VE~aY 30 (90)
T PRK04387 8 DLDWSTEEMISVLHFFNAVEKAY 30 (90)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHH
Confidence 46899999999999877665543
No 45
>PF04720 DUF506: Protein of unknown function (DUF506) ; InterPro: IPR006502 This family of uncharacterised plant proteins are defined by a region found toward the C terminus. This region is strongly conserved (greater than 30 % sequence identity between most pairs of members) but flanked by highly divergent regions including stretches of low-complexity sequence.
Probab=38.96 E-value=18 Score=28.29 Aligned_cols=25 Identities=24% Similarity=0.506 Sum_probs=20.9
Q ss_pred hHHHHHHHhhhcCCCCCHHHHHHHHHH
Q 043001 47 KWKIISETCTALDVPRTANQCRRKWDS 73 (121)
Q Consensus 47 ~W~~Ia~~m~~~G~~Rs~~QCr~KW~n 73 (121)
.=..|+..|+..||+ +.-|+++|+.
T Consensus 89 ~rr~v~~~Lr~~Gyd--AaiCkS~W~~ 113 (218)
T PF04720_consen 89 LRRSVMSRLRALGYD--AAICKSRWES 113 (218)
T ss_pred HHHHHHHHHHhCCCC--EEEEEecCCC
Confidence 457899999999995 5569999985
No 46
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=31.74 E-value=62 Score=25.90 Aligned_cols=32 Identities=13% Similarity=0.191 Sum_probs=26.7
Q ss_pred HHhhcchhhhHHHHHHHhhhcCCCCCHHHHHH
Q 043001 38 CLKALSSYQKWKIISETCTALDVPRTANQCRR 69 (121)
Q Consensus 38 ~~~~~~~~~~W~~Ia~~m~~~G~~Rs~~QCr~ 69 (121)
...++....+|++|-++|...++.=|+.|=++
T Consensus 126 Ve~sLk~AaLWdEVKDrL~~sa~~LSGGQQQR 157 (253)
T COG1117 126 VESSLKKAALWDEVKDRLHKSALGLSGGQQQR 157 (253)
T ss_pred HHHHHHHhHhHHHhHHHhhCCccCCChhHHHH
Confidence 44567788999999999999999888888654
No 47
>PF01388 ARID: ARID/BRIGHT DNA binding domain; InterPro: IPR001606 Members of the recently discovered ARID (AT-rich interaction domain; also known as BRIGHT domain)) family of DNA-binding proteins are found in fungi and invertebrate and vertebrate metazoans. ARID-encoding genes are involved in a variety of biological processes including embryonic development, cell lineage gene regulation and cell cycle control. Although the specific roles of this domain and of ARID-containing proteins in transcriptional regulation are yet to be elucidated, they include both positive and negative transcriptional regulation and a likely involvement in the modification of chromatin structure []. The basic structure of the ARID domain domain appears to be a series of six alpha-helices separated by beta-strands, loops, or turns, but the structured region may extend to an additional helix at either or both ends of the basic six. Based on primary sequence homology, they can be partitioned into three structural classes: Minimal ARID proteins that consist of a core domain formed by six alpha helices; ARID proteins that supplement the core domain with an N-terminal alpha-helix; and Extended-ARID proteins, which contain the core domain and additional alpha-helices at their N- and C-termini. The human SWI-SNF complex protein p270 is an ARID family member with non-sequence-specific DNA binding activity. The ARID consensus and other structural features are common to both p270 and yeast SWI1, suggesting that p270 is a human counterpart of SWI1 []. The approximately 100-residue ARID sequence is present in a series of proteins strongly implicated in the regulation of cell growth, development, and tissue-specific gene expression. Although about a dozen ARID proteins can be identified from database searches, to date, only Bright (a regulator of B-cell-specific gene expression), dead ringer (a Drosophila melanogaster gene product required for normal development), and MRF-2 (which represses expression from the Cytomegalovirus enhancer) have been analyzed directly in regard to their DNA binding properties. Each binds preferentially to AT-rich sites. In contrast, p270 shows no sequence preference in its DNA binding activity, thereby demonstrating that AT-rich binding is not an intrinsic property of ARID domains and that ARID family proteins may be involved in a wider range of DNA interactions [].; GO: 0003677 DNA binding, 0005622 intracellular; PDB: 1C20_A 1KQQ_A 2JRZ_A 2LM1_A 2YQE_A 2JXJ_A 2EH9_A 2CXY_A 2LI6_A 1KN5_A ....
Probab=30.35 E-value=1.5e+02 Score=18.94 Aligned_cols=32 Identities=19% Similarity=0.454 Sum_probs=18.4
Q ss_pred chhhhHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHH
Q 043001 43 SSYQKWKIISETCTALDVPRTANQCRRKWDSLIDEYKK 80 (121)
Q Consensus 43 ~~~~~W~~Ia~~m~~~G~~Rs~~QCr~KW~nL~~~Ykk 80 (121)
+....|..||+.|. +..+... ....|.+.|.+
T Consensus 55 ~~~~~W~~va~~lg---~~~~~~~---~~~~L~~~Y~~ 86 (92)
T PF01388_consen 55 TKNKKWREVARKLG---FPPSSTS---AAQQLRQHYEK 86 (92)
T ss_dssp HHHTTHHHHHHHTT---S-TTSCH---HHHHHHHHHHH
T ss_pred cccchHHHHHHHhC---CCCCCCc---HHHHHHHHHHH
Confidence 45667999999985 5442111 14455555554
No 48
>KOG4468 consensus Polycomb-group transcriptional regulator [Transcription]
Probab=30.05 E-value=2.2e+02 Score=26.09 Aligned_cols=57 Identities=11% Similarity=0.101 Sum_probs=42.4
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHhhh
Q 043001 17 PDWSSKEALILGNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLIDEYKKIIV 83 (121)
Q Consensus 17 ~~Wt~~Etl~LI~~r~~~e~~~~~~~~~~~~W~~Ia~~m~~~G~~Rs~~QCr~KW~nL~~~Ykkikd 83 (121)
.-||++|.-.+-.+.+++- ..++.|...+...-..-|-.|-+.|..+=..+|+-+..
T Consensus 89 taWt~~E~~~Ffdal~~~G----------KdFe~VinaklKRrna~s~~~~Ktkdqvr~~yY~~~~~ 145 (782)
T KOG4468|consen 89 TAWTHQEEESFFDALRQVG----------KDFEKVINAKLKRRNATSRVQSKTKDQVRHYYYRLVRR 145 (782)
T ss_pred cccchhhHHHHHHHHHHhc----------ccHHHHHHHHHHhcccccchhhhhhHHHHHHHHHHHHH
Confidence 3699999999988877663 34556655555555556777888999888888988765
No 49
>PRK07217 replication factor A; Reviewed
Probab=29.54 E-value=78 Score=26.12 Aligned_cols=33 Identities=24% Similarity=0.377 Sum_probs=28.6
Q ss_pred HHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHH
Q 043001 48 WKIISETCTALDVPRTANQCRRKWDSLIDEYKK 80 (121)
Q Consensus 48 W~~Ia~~m~~~G~~Rs~~QCr~KW~nL~~~Ykk 80 (121)
=++|++.+..+|++-+-..-..+.++|...|+-
T Consensus 8 aeei~~~~s~lgvdv~~~~ie~~L~~Lv~ey~V 40 (311)
T PRK07217 8 AEEIHEQFSDLGVDVSVEDVEERLDTLVTEFKV 40 (311)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHHcCC
Confidence 367888889999998899999999999988863
No 50
>cd01104 HTH_MlrA-CarA Helix-Turn-Helix DNA binding domain of the transcription regulators MlrA and CarA. Helix-turn-helix (HTH) transcription regulator MlrA (merR-like regulator A), N-terminal domain. The MlrA protein, also known as YehV, has been shown to control cell-cell aggregation by co-regulating the expression of curli and extracellular matrix production in Escherichia coli and Salmonella typhimurium. Its close homolog, CarA from Myxococcus xanthus, is involved in activation of the carotenoid biosynthesis genes by light. These proteins belong to the MerR superfamily of transcription regulators that promote expression of several stress regulon genes by reconfiguring the spacer between the -35 and -10 promoter elements. Their conserved N-terminal domains contain predicted HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules. Many MlrA- and CarA-like proteins in this group appear to lack the long dimerization helix seen i
Probab=29.16 E-value=91 Score=18.54 Aligned_cols=32 Identities=13% Similarity=-0.073 Sum_probs=21.6
Q ss_pred CCCCCCcccCCCCCCCCCHHHHHHHHHHHHHHH
Q 043001 3 GGSSRTRHTRSQVGPDWSSKEALILGNEIAAVE 35 (121)
Q Consensus 3 ~g~~~~~~~r~~~~~~Wt~~Etl~LI~~r~~~e 35 (121)
+|.+.+.+.. .+...++.+++..|..++...+
T Consensus 24 ~g~~~~~r~~-~~~r~yt~~~v~~l~~i~~l~~ 55 (68)
T cd01104 24 YGLPAPQRTD-GGHRLYSEADVARLRLIRRLTS 55 (68)
T ss_pred CCCCCCCcCC-CCCeecCHHHHHHHHHHHHHHH
Confidence 5666654322 3446799999999988875543
No 51
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=28.75 E-value=1.4e+02 Score=18.21 Aligned_cols=63 Identities=6% Similarity=0.067 Sum_probs=43.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHhhh
Q 043001 20 SSKEALILGNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLIDEYKKIIV 83 (121)
Q Consensus 20 t~~Etl~LI~~r~~~e~~~~~~~~~~~~W~~Ia~~m~~~G~~Rs~~QCr~KW~nL~~~Ykkikd 83 (121)
..+++..++.........+......-..=...++.|...+ .=.+..++.+..+|...|..+..
T Consensus 32 ~~~~~~~~~~~~~~~~~ei~~~~~~l~~l~~~~~~L~~~~-~~~~~~i~~~~~~l~~~w~~l~~ 94 (105)
T PF00435_consen 32 DLEELEEQLKKHKELQEEIESRQERLESLNEQAQQLIDSG-PEDSDEIQEKLEELNQRWEALCE 94 (105)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-HTTHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHHHHHHH
Confidence 3466777777666666665554455555567778886555 46778888999999888888764
No 52
>PF05256 UPF0223: Uncharacterised protein family (UPF0223); InterPro: IPR007920 This family of proteins is functionally uncharacterised.; PDB: 2OY9_B.
Probab=26.64 E-value=1.2e+02 Score=20.49 Aligned_cols=23 Identities=39% Similarity=0.572 Sum_probs=14.5
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHH
Q 043001 16 GPDWSSKEALILGNEIAAVEADC 38 (121)
Q Consensus 16 ~~~Wt~~Etl~LI~~r~~~e~~~ 38 (121)
.+.||.+|+...|+....+|.-.
T Consensus 8 d~dWsteEii~Vi~F~~~VE~AY 30 (88)
T PF05256_consen 8 DPDWSTEEIIDVINFFNAVEKAY 30 (88)
T ss_dssp -----HHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHH
Confidence 46799999999999887776543
No 53
>PF15308 CEP170_C: CEP170 C-terminus
Probab=26.32 E-value=1.5e+02 Score=27.01 Aligned_cols=71 Identities=17% Similarity=0.310 Sum_probs=39.9
Q ss_pred cCCCCCCCCCHHHHHH---HH--------HHHHHHHHHHHh----hcchhhhHHHHHHHhhhc-CCCCCHHHHHHHHHHH
Q 043001 11 TRSQVGPDWSSKEALI---LG--------NEIAAVEADCLK----ALSSYQKWKIISETCTAL-DVPRTANQCRRKWDSL 74 (121)
Q Consensus 11 ~r~~~~~~Wt~~Etl~---LI--------~~r~~~e~~~~~----~~~~~~~W~~Ia~~m~~~-G~~Rs~~QCr~KW~nL 74 (121)
.+..+...|..+|+.. || .||...|.--.. .+-+...|++|..+|.+. .+. -.+--.....+|
T Consensus 578 ~~~~~~r~~nreev~~DnLmLnpVsQls~~Irente~la~KikiLFq~~~r~WeeiEaKi~aE~evp-ilKTSNKEIsSI 656 (689)
T PF15308_consen 578 PRANRRRTWNREEVIFDNLMLNPVSQLSQAIRENTEKLAEKIKILFQDKERNWEEIEAKINAENEVP-ILKTSNKEISSI 656 (689)
T ss_pred ccccccCCCchhhhcccccccchHHHHHHHHHHHHHHhhhhheeeecccccchHHHHHhhhccccCc-ccCCccHHHHHH
Confidence 3445566799999742 22 233333332211 224577999999999975 332 222233456666
Q ss_pred HHHHHHhh
Q 043001 75 IDEYKKII 82 (121)
Q Consensus 75 ~~~Ykkik 82 (121)
+++.+.|.
T Consensus 657 LkeLrRVq 664 (689)
T PF15308_consen 657 LKELRRVQ 664 (689)
T ss_pred HHHHHHHH
Confidence 66666653
No 54
>COG0218 Predicted GTPase [General function prediction only]
Probab=25.30 E-value=1.3e+02 Score=23.19 Aligned_cols=54 Identities=19% Similarity=0.386 Sum_probs=35.7
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHhhhCCCCCCCChhhhhhcCCCCCCcHHHHHHHHHH
Q 043001 59 DVPRTANQCRRKWDSLIDEYKKIIVRSRTFPKSQTQAHTDCFPPNFDRELFKAIHDF 115 (121)
Q Consensus 59 G~~Rs~~QCr~KW~nL~~~Ykkikd~~~syw~~~~~rk~~~LP~~fd~e~f~~ld~~ 115 (121)
||..-++.=+++|..+.-+|-.-+..-.-...--+ .+..|...|+|+|+.|.+.
T Consensus 81 GyAkv~k~~~e~w~~~i~~YL~~R~~L~~vvlliD---~r~~~~~~D~em~~~l~~~ 134 (200)
T COG0218 81 GYAKVPKEVKEKWKKLIEEYLEKRANLKGVVLLID---ARHPPKDLDREMIEFLLEL 134 (200)
T ss_pred ccccCCHHHHHHHHHHHHHHHhhchhheEEEEEEE---CCCCCcHHHHHHHHHHHHc
Confidence 78888889999999999999887641000000000 1234567899999988764
No 55
>COG4877 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.32 E-value=76 Score=20.02 Aligned_cols=22 Identities=18% Similarity=0.451 Sum_probs=18.1
Q ss_pred hhcCCCCCCcHHHHHHHHHHhh
Q 043001 96 HTDCFPPNFDRELFKAIHDFVM 117 (121)
Q Consensus 96 k~~~LP~~fd~e~f~~ld~~~~ 117 (121)
+...+|-.++..+|++|..|-.
T Consensus 5 ~~kQ~PLRl~paiy~Aia~wA~ 26 (63)
T COG4877 5 KGKQFPLRLEPAIYAAIAQWAE 26 (63)
T ss_pred ccCcCCeecCHHHHHHHHHHHH
Confidence 3456899999999999998854
No 56
>PF06057 VirJ: Bacterial virulence protein (VirJ); InterPro: IPR010333 This entry contains several bacterial VirJ virulence proteins. VirJ is thought to be involved in the type IV secretion system. It is thought that the substrate proteins localised to the periplasm may associate with the pilus in a manner that is mediated by VirJ, and suggest a two-step process for type IV secretion in Agrobacterium [].
Probab=24.26 E-value=1.8e+02 Score=22.32 Aligned_cols=35 Identities=26% Similarity=0.256 Sum_probs=29.7
Q ss_pred hHHHHHHHhhhcCC-------------CCCHHHHHHHHHHHHHHHHHh
Q 043001 47 KWKIISETCTALDV-------------PRTANQCRRKWDSLIDEYKKI 81 (121)
Q Consensus 47 ~W~~Ia~~m~~~G~-------------~Rs~~QCr~KW~nL~~~Ykki 81 (121)
.=..||+.|++.|+ .||+.|.-.--..+...|.+-
T Consensus 17 ~d~~~a~~l~~~G~~VvGvdsl~Yfw~~rtP~~~a~Dl~~~i~~y~~~ 64 (192)
T PF06057_consen 17 LDKQIAEALAKQGVPVVGVDSLRYFWSERTPEQTAADLARIIRHYRAR 64 (192)
T ss_pred hhHHHHHHHHHCCCeEEEechHHHHhhhCCHHHHHHHHHHHHHHHHHH
Confidence 33568888888886 499999999999999999876
No 57
>smart00426 TEA TEA domain.
Probab=24.07 E-value=66 Score=20.78 Aligned_cols=54 Identities=15% Similarity=0.144 Sum_probs=34.8
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHh-------hcchhhhHHHHHHHhhh-cCCCCCHHHHHHH
Q 043001 16 GPDWSSKEALILGNEIAAVEADCLK-------ALSSYQKWKIISETCTA-LDVPRTANQCRRK 70 (121)
Q Consensus 16 ~~~Wt~~Etl~LI~~r~~~e~~~~~-------~~~~~~~W~~Ia~~m~~-~G~~Rs~~QCr~K 70 (121)
...|+.+=..+|+++....-..-.. +++ .-+=+-||+++.. .|..||.+|--+.
T Consensus 3 ~~vWp~~lE~Af~~aL~~~~~~g~~kik~~~r~k~-~gRNelIs~YI~~~tGk~Rt~KQVsSh 64 (68)
T smart00426 3 EGVWSPDIEQAFQEALAIYPPCGRRKIILSDEGKM-YGRNELIARYIKLRTGKTRTRKQVSSH 64 (68)
T ss_pred CCcCcHHHHHHHHHHHHHcCccCcccchhhhcCcc-cchhHHHHHHHHHHhCCccchhhhcch
Confidence 4679988778888775543211111 111 2245789999996 7999999996543
No 58
>KOG4618 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.02 E-value=1e+02 Score=20.15 Aligned_cols=28 Identities=18% Similarity=0.398 Sum_probs=17.1
Q ss_pred HhhhcCCCCCH--------HHHHHHHHHHHHHHHHh
Q 043001 54 TCTALDVPRTA--------NQCRRKWDSLIDEYKKI 81 (121)
Q Consensus 54 ~m~~~G~~Rs~--------~QCr~KW~nL~~~Ykki 81 (121)
-|.+.||+|+- +-|+..|......=++|
T Consensus 34 CLeennyDRsKCq~yFd~YkeCKkfwn~ar~errk~ 69 (74)
T KOG4618|consen 34 CLEENNYDRSKCQDYFDVYKECKKFWNEARLERRKT 69 (74)
T ss_pred HHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34457888874 34777777666554443
No 59
>PF14131 DUF4298: Domain of unknown function (DUF4298)
Probab=23.76 E-value=1.9e+02 Score=19.14 Aligned_cols=53 Identities=15% Similarity=0.345 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHhhh--CCCCCCCChhhhhhcCCCCCC------cHHHHHHHHHHh
Q 043001 64 ANQCRRKWDSLIDEYKKIIV--RSRTFPKSQTQAHTDCFPPNF------DRELFKAIHDFV 116 (121)
Q Consensus 64 ~~QCr~KW~nL~~~Ykkikd--~~~syw~~~~~rk~~~LP~~f------d~e~f~~ld~~~ 116 (121)
....-.+|+.....|++..+ ++..|....+.--.-.||... ...|||+|.++.
T Consensus 19 le~~l~~~~~~~~~~~~L~~YY~s~~w~~d~e~~e~g~~~~~~~~gVLSEDaiyn~lgd~~ 79 (90)
T PF14131_consen 19 LEEALEKWQEAQPDYRKLRDYYGSEEWMEDYEASEQGDLPTDGKCGVLSEDAIYNALGDHY 79 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCcHhHHHHHHHHhCCCCCCCcccCccCchHHHHHHHHHH
Confidence 34667888888888888887 555444433322223555432 346889887764
No 60
>PF14920 MTBP_C: MDM2-binding
Probab=23.41 E-value=1.7e+02 Score=23.39 Aligned_cols=37 Identities=14% Similarity=0.228 Sum_probs=31.3
Q ss_pred hhhhHHHHHHHhhhcCCCCCH---HHHHHHHHHHHHHHHH
Q 043001 44 SYQKWKIISETCTALDVPRTA---NQCRRKWDSLIDEYKK 80 (121)
Q Consensus 44 ~~~~W~~Ia~~m~~~G~~Rs~---~QCr~KW~nL~~~Ykk 80 (121)
+--+|+.|++.|..+||..+. +-|-.+--+|.+.|-|
T Consensus 188 tR~LkeVVa~tLk~hgI~e~H~cF~aCSqRLFeISKfyLK 227 (251)
T PF14920_consen 188 TRMLKEVVAETLKKHGITEAHECFKACSQRLFEISKFYLK 227 (251)
T ss_pred HHHHHHHHHHHHHHcCCcccchhHHHHHHHHHHHHHHHHH
Confidence 456999999999999997654 6799999999999864
No 61
>smart00501 BRIGHT BRIGHT, ARID (A/T-rich interaction domain) domain. DNA-binding domain containing a helix-turn-helix structure
Probab=23.03 E-value=2.1e+02 Score=18.48 Aligned_cols=33 Identities=27% Similarity=0.489 Sum_probs=20.0
Q ss_pred cchhhhHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHH
Q 043001 42 LSSYQKWKIISETCTALDVPRTANQCRRKWDSLIDEYKK 80 (121)
Q Consensus 42 ~~~~~~W~~Ia~~m~~~G~~Rs~~QCr~KW~nL~~~Ykk 80 (121)
.+....|..||..|. +.-+ |-.--..|...|.+
T Consensus 50 v~~~~~W~~Va~~lg---~~~~---~~~~~~~lk~~Y~k 82 (93)
T smart00501 50 VTKDKKWKEIARELG---IPDT---STSAASSLRKHYER 82 (93)
T ss_pred HcCCCCHHHHHHHhC---CCcc---cchHHHHHHHHHHH
Confidence 345678999998876 5432 44444455555554
No 62
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=22.49 E-value=74 Score=21.55 Aligned_cols=16 Identities=31% Similarity=0.534 Sum_probs=13.9
Q ss_pred CCcHHHHHHHHHHhhc
Q 043001 103 NFDRELFKAIHDFVMS 118 (121)
Q Consensus 103 ~fd~e~f~~ld~~~~~ 118 (121)
.+|.+||.+|-+++..
T Consensus 40 ~~dp~VFriildLL~~ 55 (88)
T PF12926_consen 40 PMDPEVFRIILDLLRL 55 (88)
T ss_pred CcChHHHHHHHHHHHc
Confidence 6899999999998864
No 63
>PF08707 PriCT_2: Primase C terminal 2 (PriCT-2) ; InterPro: IPR014819 This alpha helical domain is found at the C-terminal of primases. ; GO: 0016817 hydrolase activity, acting on acid anhydrides
Probab=21.93 E-value=1.1e+02 Score=19.27 Aligned_cols=28 Identities=25% Similarity=0.603 Sum_probs=21.8
Q ss_pred chhhhHHHHHHHhhhcCCCCCHHHHHHHHHHH
Q 043001 43 SSYQKWKIISETCTALDVPRTANQCRRKWDSL 74 (121)
Q Consensus 43 ~~~~~W~~Ia~~m~~~G~~Rs~~QCr~KW~nL 74 (121)
....+|.+.|.. ...|+. ..|..+|.++
T Consensus 36 ~g~~l~~~wS~~--~~ky~~--~e~~~~W~s~ 63 (78)
T PF08707_consen 36 EGLDLWDEWSRQ--SPKYDE--EECERKWRSF 63 (78)
T ss_pred HHHHHHHHHhcC--CCCCCH--HHHHHHHHhC
Confidence 356789999988 456655 7799999987
No 64
>PF00959 Phage_lysozyme: Phage lysozyme; InterPro: IPR002196 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 24 GH24 from CAZY comprises enzymes with only one known activity; lysozyme (3.2.1.17 from EC). This entry includes Bacteriophage lambda lysozyme and Escherichia coli endolysin []. Lysozyme helps to release mature phage particles from the cell wall by breaking down the peptidoglycan. The enzyme hydrolyses the 1,4-beta linkages between N-acetyl-D-glucosamine and N-acetylmuramic acid in peptidoglycan heteropolymers of prokaryotic cell walls. E. coli endolysin also functions in bacterial cell lysis and acts as a transglycosylase. The Bacteriophage T4 lysozyme structure contains 2 domains, the interface between which forms the active-site cleft. The N terminus of the 2 domains undergoes a 'hinge-bending' motion about an axis passing through the molecular waist [, ]. This mobility is thought to be important in allowing access of substrates to the enzyme active site.; GO: 0003796 lysozyme activity, 0009253 peptidoglycan catabolic process, 0016998 cell wall macromolecule catabolic process; PDB: 1XJT_A 1XJU_A 1K28_A 1WTH_A 2Z6B_A 1AM7_C 3D3D_B 1D9U_B 2ANX_A 2ANV_B ....
Probab=21.83 E-value=1.8e+02 Score=19.08 Aligned_cols=41 Identities=17% Similarity=0.289 Sum_probs=30.7
Q ss_pred CCHHHHHHHHHHHHHHHHHhhhCCCCCCCChhhhhhcCCCC-CCcHHHHHHHHHHh
Q 043001 62 RTANQCRRKWDSLIDEYKKIIVRSRTFPKSQTQAHTDCFPP-NFDRELFKAIHDFV 116 (121)
Q Consensus 62 Rs~~QCr~KW~nL~~~Ykkikd~~~syw~~~~~rk~~~LP~-~fd~e~f~~ld~~~ 116 (121)
.|..||...+......|...-... +|. .|++..|++|..|.
T Consensus 19 it~~qa~~ll~~d~~~~~~~v~~~--------------~~~~~l~~~~~dal~s~~ 60 (110)
T PF00959_consen 19 ITEAQADELLQKDLQKAEAAVRRY--------------VPVDDLNQNQFDALVSFA 60 (110)
T ss_dssp TEHHHHHHHHHHHHHHHHHHHHHH--------------TTSHHSSHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHhhh--------------cccCCcCHHHHHHHHhcc
Confidence 688999999998888777654422 223 67889999998874
No 65
>TIGR02218 phg_TIGR02218 phage conserved hypothetical protein BR0599. This model describes a family of proteins found almost exclusively in phage or in prophage regions of bacterial genomes, including the phage-like Rhodobacter capsulatus gene transfer agent, which packages DNA. An apparent exception is Wolbachia pipientis wMel, a bacterial endosymbiont of the fruit fly, which has several candidate phage-related genes physically separate from obvious prophage regions.
Probab=21.76 E-value=38 Score=26.46 Aligned_cols=19 Identities=21% Similarity=0.578 Sum_probs=17.2
Q ss_pred cCCCCCHHHHHHHHHHHHH
Q 043001 58 LDVPRTANQCRRKWDSLID 76 (121)
Q Consensus 58 ~G~~Rs~~QCr~KW~nL~~ 76 (121)
-|.+++..-|+.||.|+++
T Consensus 183 ~GCDk~~~TC~~KF~N~~N 201 (229)
T TIGR02218 183 AGCDKRFATCRAKFNNLVN 201 (229)
T ss_pred CCCCCChhHHHHHhCCccc
Confidence 6899999999999999874
No 66
>PF12162 STAT1_TAZ2bind: STAT1 TAZ2 binding domain; InterPro: IPR022752 This entry represents the C-terminal domain of STAT1, which selectively binds the TAZ2 domain of CRB (CREB-binding protein) []. This group of eukaryotic proteins is approximately 20 amino acids in length, and is found in association with PF02865 from PFAM, PF00017 from PFAM, PF01017 from PFAM, PF02864 from PFAM. By binding to CRB, it becomes a transcriptional activator and can initiate transcription of certain genes. ; GO: 0003700 sequence-specific DNA binding transcription factor activity; PDB: 2KA6_B.
Probab=21.58 E-value=1.1e+02 Score=15.72 Aligned_cols=19 Identities=11% Similarity=0.359 Sum_probs=11.8
Q ss_pred hcCCCCCCcHHHHHHHHHHhh
Q 043001 97 TDCFPPNFDRELFKAIHDFVM 117 (121)
Q Consensus 97 ~~~LP~~fd~e~f~~ld~~~~ 117 (121)
+.-|| +..|.|++|..+++
T Consensus 5 dnmmP--MSPddy~~l~~~V~ 23 (23)
T PF12162_consen 5 DNMMP--MSPDDYDELERMVG 23 (23)
T ss_dssp TS-----S-HHHHHHHHHHHT
T ss_pred hcccC--CCHHHHHHHHHhhC
Confidence 34566 56899999998864
No 67
>PRK10545 nucleotide excision repair endonuclease; Provisional
Probab=20.87 E-value=84 Score=25.43 Aligned_cols=22 Identities=23% Similarity=0.336 Sum_probs=18.6
Q ss_pred cCCCCCCcHHHHHHHHHHhhcc
Q 043001 98 DCFPPNFDRELFKAIHDFVMSK 119 (121)
Q Consensus 98 ~~LP~~fd~e~f~~ld~~~~~~ 119 (121)
..-|+.||.+.|.+|..++...
T Consensus 258 ~~~~~~fd~d~y~il~~~l~~~ 279 (286)
T PRK10545 258 IRTPAGFDHDGYKILCKPLLSG 279 (286)
T ss_pred hcCCCCcChHHHHHHHHHHhcC
Confidence 3567899999999999998764
No 68
>KOG1170 consensus Diacylglycerol kinase [Lipid transport and metabolism]
Probab=20.19 E-value=1.2e+02 Score=28.63 Aligned_cols=46 Identities=20% Similarity=0.372 Sum_probs=32.4
Q ss_pred CCHHHHHHHHHH------------HHHHHHHhhh----------------------------CCCCCCCChhhhhhcCCC
Q 043001 62 RTANQCRRKWDS------------LIDEYKKIIV----------------------------RSRTFPKSQTQAHTDCFP 101 (121)
Q Consensus 62 Rs~~QCr~KW~n------------L~~~Ykkikd----------------------------~~~syw~~~~~rk~~~LP 101 (121)
=.+.+||++=+| |.+.||+.-. |+.+||-++.+--++.-
T Consensus 637 EhPeKcrSR~kn~MWYGvLGtKeLLhrTyrnLEQRV~LECDG~~i~lP~LQGIviLNIpSyaGGtNFWGsnk~dd~f~a- 715 (1099)
T KOG1170|consen 637 EHPEKCRSRSKNFMWYGVLGTKELLHRTYRNLEQRVKLECDGVPIDLPSLQGIVILNIPSYAGGTNFWGSNKDDDEFTA- 715 (1099)
T ss_pred cChHHHhHHhhhcchhhhcchHHHHHHHHHhHHHHeeeecCCcccCCcccceeEEEecccccCcccccCCCCCCCcccC-
Confidence 357899998666 5678988754 78999995555555554
Q ss_pred CCCcHHH
Q 043001 102 PNFDREL 108 (121)
Q Consensus 102 ~~fd~e~ 108 (121)
+.||..+
T Consensus 716 pSfDDri 722 (1099)
T KOG1170|consen 716 PSFDDRI 722 (1099)
T ss_pred CCcccce
Confidence 4787654
No 69
>PF14420 Clr5: Clr5 domain
Probab=20.03 E-value=1.8e+02 Score=17.23 Aligned_cols=26 Identities=15% Similarity=0.229 Sum_probs=21.2
Q ss_pred hHHHHHHHhhh-cCCCCCHHHHHHHHH
Q 043001 47 KWKIISETCTA-LDVPRTANQCRRKWD 72 (121)
Q Consensus 47 ~W~~Ia~~m~~-~G~~Rs~~QCr~KW~ 72 (121)
--++|.+.|.+ +||.-|..|-+.++.
T Consensus 22 tl~~v~~~M~~~~~F~at~rqy~~r~~ 48 (54)
T PF14420_consen 22 TLEEVMEIMKEEHGFKATKRQYKRRFK 48 (54)
T ss_pred cHHHHHHHHHHHhCCCcCHHHHHHHHH
Confidence 44789999965 799999998888765
Done!