Query 043001
Match_columns 121
No_of_seqs 106 out of 288
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 20:44:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043001.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043001hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ebi_A DNA binding protein GT- 99.9 4.7E-24 1.6E-28 141.7 7.9 71 14-84 2-72 (86)
2 3sjm_A Telomeric repeat-bindin 99.1 3.4E-10 1.2E-14 71.3 6.8 50 15-76 10-60 (64)
3 1w0t_A Telomeric repeat bindin 99.0 1.2E-09 4.2E-14 65.8 6.4 49 16-76 2-51 (53)
4 1ity_A TRF1; helix-turn-helix, 98.9 3.3E-09 1.1E-13 67.1 7.3 50 15-76 9-59 (69)
5 1guu_A C-MYB, MYB proto-oncoge 98.9 2.4E-09 8.3E-14 64.1 5.9 47 16-75 3-49 (52)
6 2d9a_A B-MYB, MYB-related prot 98.9 2.5E-09 8.4E-14 65.9 5.4 47 16-75 8-54 (60)
7 2dim_A Cell division cycle 5-l 98.9 3E-09 1E-13 67.4 5.5 47 16-75 9-55 (70)
8 1gvd_A MYB proto-oncogene prot 98.9 2.6E-09 8.8E-14 64.0 4.6 47 16-75 3-49 (52)
9 1x41_A Transcriptional adaptor 98.8 7.8E-09 2.7E-13 63.9 6.6 47 16-75 8-54 (60)
10 2yus_A SWI/SNF-related matrix- 98.8 4.6E-09 1.6E-13 68.7 5.6 57 4-74 1-62 (79)
11 2elk_A SPCC24B10.08C protein; 98.8 1.5E-08 5.1E-13 62.3 7.2 48 16-75 9-56 (58)
12 2yum_A ZZZ3 protein, zinc fing 98.7 5.9E-08 2E-12 62.1 6.9 53 16-76 8-60 (75)
13 2din_A Cell division cycle 5-l 98.7 7.1E-08 2.4E-12 60.3 7.1 50 16-80 9-58 (66)
14 2cu7_A KIAA1915 protein; nucle 98.7 7.9E-08 2.7E-12 61.2 7.2 48 16-77 9-56 (72)
15 2aje_A Telomere repeat-binding 98.6 7.2E-08 2.5E-12 66.3 5.9 88 4-110 1-88 (105)
16 2cqr_A RSGI RUH-043, DNAJ homo 98.5 1.8E-07 6.3E-12 60.3 6.3 50 17-76 19-68 (73)
17 2k9n_A MYB24; R2R3 domain, DNA 98.5 1.7E-07 5.9E-12 63.6 5.7 46 17-75 2-47 (107)
18 2cjj_A Radialis; plant develop 98.5 4.4E-07 1.5E-11 61.0 7.4 59 16-84 8-66 (93)
19 2roh_A RTBP1, telomere binding 98.5 7.3E-07 2.5E-11 62.7 8.7 54 15-77 30-83 (122)
20 2ckx_A NGTRF1, telomere bindin 98.5 3.4E-07 1.2E-11 60.4 6.5 72 18-108 2-73 (83)
21 3osg_A MYB21; transcription-DN 98.5 3E-07 1E-11 64.1 5.9 48 14-75 9-56 (126)
22 2juh_A Telomere binding protei 98.5 9E-07 3.1E-11 62.2 8.3 54 15-77 16-69 (121)
23 1gv2_A C-MYB, MYB proto-oncoge 98.4 2.2E-07 7.4E-12 62.6 4.6 47 16-75 4-50 (105)
24 2llk_A Cyclin-D-binding MYB-li 98.4 4.6E-07 1.6E-11 58.4 5.7 46 16-76 23-68 (73)
25 1h8a_C AMV V-MYB, MYB transfor 98.3 8.3E-07 2.8E-11 61.8 5.0 47 16-75 27-73 (128)
26 2cqq_A RSGI RUH-037, DNAJ homo 98.3 2.6E-06 8.9E-11 54.7 6.8 51 16-77 8-58 (72)
27 3zqc_A MYB3; transcription-DNA 98.3 3.1E-07 1E-11 64.4 2.4 47 16-75 2-48 (131)
28 2k9n_A MYB24; R2R3 domain, DNA 98.3 2.1E-06 7.1E-11 58.1 6.4 48 16-77 53-100 (107)
29 3osg_A MYB21; transcription-DN 98.2 3E-06 1E-10 59.0 5.8 48 16-77 62-109 (126)
30 1gv2_A C-MYB, MYB proto-oncoge 98.2 1.9E-06 6.5E-11 57.9 4.4 47 16-76 56-102 (105)
31 2ltp_A Nuclear receptor corepr 97.4 3.2E-07 1.1E-11 60.8 0.0 49 16-78 16-64 (89)
32 1h89_C C-MYB, MYB proto-oncoge 98.0 4.8E-06 1.6E-10 59.8 4.9 47 16-75 58-104 (159)
33 1h89_C C-MYB, MYB proto-oncoge 97.9 8.5E-07 2.9E-11 63.7 -0.6 47 16-75 6-52 (159)
34 2eqr_A N-COR1, N-COR, nuclear 97.9 3.7E-05 1.2E-09 47.4 6.8 55 4-73 1-55 (61)
35 3zqc_A MYB3; transcription-DNA 97.9 5E-06 1.7E-10 58.1 3.2 47 16-76 54-100 (131)
36 1h8a_C AMV V-MYB, MYB transfor 97.9 5.5E-06 1.9E-10 57.6 3.3 47 16-76 79-125 (128)
37 1wgx_A KIAA1903 protein; MYB D 97.8 5.5E-05 1.9E-09 48.7 5.9 50 16-75 8-57 (73)
38 1x58_A Hypothetical protein 49 97.6 0.00011 3.9E-09 45.9 5.3 50 16-76 8-57 (62)
39 1ign_A Protein (RAP1); RAP1,ye 97.4 7.6E-05 2.6E-09 57.8 3.1 54 16-77 8-61 (246)
40 2iw5_B Protein corest, REST co 96.9 0.0012 4E-08 50.9 5.3 49 15-77 132-180 (235)
41 1ug2_A 2610100B20RIK gene prod 96.2 0.037 1.3E-06 37.0 8.2 58 15-83 32-89 (95)
42 3hm5_A DNA methyltransferase 1 96.0 0.026 9E-07 37.6 6.9 56 17-82 31-87 (93)
43 1fex_A TRF2-interacting telome 96.0 0.0066 2.3E-07 37.1 3.5 52 17-73 3-55 (59)
44 2xag_B REST corepressor 1; ami 95.7 0.018 6E-07 48.5 5.8 44 15-72 379-422 (482)
45 2lr8_A CAsp8-associated protei 93.7 0.0058 2E-07 38.8 0.0 55 16-82 14-68 (70)
46 2yqk_A Arginine-glutamic acid 93.8 0.19 6.4E-06 30.6 5.6 40 16-69 9-49 (63)
47 4iej_A DNA methyltransferase 1 92.8 0.48 1.6E-05 31.5 6.8 58 16-83 30-88 (93)
48 4eef_G F-HB80.4, designed hema 90.7 0.014 4.8E-07 37.5 -2.5 46 15-70 19-64 (74)
49 4a69_C Nuclear receptor corepr 87.7 0.61 2.1E-05 30.6 3.8 40 16-69 43-82 (94)
50 2crg_A Metastasis associated p 83.3 1.9 6.7E-05 26.6 4.4 42 14-69 6-48 (70)
51 2kwv_A RAD30 homolog B, DNA po 78.2 0.2 6.7E-06 29.4 -1.5 18 95-112 7-24 (48)
52 2c9l_Y EB1, zebra, BZLF1 trans 77.7 2.2 7.5E-05 25.8 3.0 20 64-83 13-32 (63)
53 1irz_A ARR10-B; helix-turn-hel 42.5 56 0.0019 19.8 7.2 49 16-73 7-55 (64)
54 1ign_A Protein (RAP1); RAP1,ye 33.2 1.4E+02 0.0049 22.7 6.7 33 46-83 172-204 (246)
55 2oy9_A UPF0223 protein BH2638; 28.8 90 0.0031 20.6 4.3 23 16-38 10-32 (98)
56 2hzd_A Transcriptional enhance 28.4 69 0.0024 20.4 3.6 62 15-77 5-74 (82)
57 2kk0_A AT-rich interactive dom 27.6 70 0.0024 22.0 3.9 35 42-82 82-116 (145)
58 4b4c_A Chromodomain-helicase-D 27.5 1.6E+02 0.0054 20.7 6.0 58 16-82 7-64 (211)
59 2cxy_A BAF250B subunit, HBAF25 27.1 1.1E+02 0.0038 20.2 4.8 32 43-81 70-101 (125)
60 2lm1_A Lysine-specific demethy 25.4 1.3E+02 0.0046 19.1 5.7 32 43-81 63-94 (107)
61 1ofc_X ISWI protein; nuclear p 23.9 1E+02 0.0035 24.1 4.6 52 14-78 108-159 (304)
62 2eqy_A RBP2 like, jumonji, at 23.0 1.5E+02 0.0052 19.5 4.8 33 42-81 60-92 (122)
63 1e17_A AFX; DNA binding domain 22.7 28 0.00094 24.7 1.0 86 6-96 27-125 (150)
64 1ofc_X ISWI protein; nuclear p 20.3 3.1E+02 0.011 21.3 7.8 61 15-81 211-279 (304)
No 1
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=99.90 E-value=4.7e-24 Score=141.65 Aligned_cols=71 Identities=21% Similarity=0.338 Sum_probs=68.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHhhhC
Q 043001 14 QVGPDWSSKEALILGNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLIDEYKKIIVR 84 (121)
Q Consensus 14 ~~~~~Wt~~Etl~LI~~r~~~e~~~~~~~~~~~~W~~Ia~~m~~~G~~Rs~~QCr~KW~nL~~~Ykkikd~ 84 (121)
.|.++||++||++||+++++++..|+.++++..+|++||+.|.++||+||+.||+.||+||++.|++|++.
T Consensus 2 kR~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~Yk~~k~~ 72 (86)
T 2ebi_A 2 KRAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKEFKKAKHH 72 (86)
T ss_dssp CCSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCSCSSC
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 46899999999999999999999999999999999999999999999999999999999999999999993
No 2
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.08 E-value=3.4e-10 Score=71.32 Aligned_cols=50 Identities=18% Similarity=0.387 Sum_probs=41.2
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHhhhcCC-CCCHHHHHHHHHHHHH
Q 043001 15 VGPDWSSKEALILGNEIAAVEADCLKALSSYQKWKIISETCTALDV-PRTANQCRRKWDSLID 76 (121)
Q Consensus 15 ~~~~Wt~~Etl~LI~~r~~~e~~~~~~~~~~~~W~~Ia~~m~~~G~-~Rs~~QCr~KW~nL~~ 76 (121)
+...||.+|...|+++...+ +...|..||+.+. + .||+.||+++|.||++
T Consensus 10 kk~~WT~eED~~L~~~V~~~---------G~~~W~~Ia~~~~---~~~Rt~~qcr~Rw~nl~k 60 (64)
T 3sjm_A 10 KKQKWTVEESEWVKAGVQKY---------GEGNWAAISKNYP---FVNRTAVMIKDRWRTMKR 60 (64)
T ss_dssp CCCCCCHHHHHHHHHHHHHH---------CTTCHHHHHHHSC---CSSCCHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHcc---------CCCchHHHHhhcC---CCCCCHHHHHHHHHHHhc
Confidence 35679999999999987655 4457999998753 3 5999999999999974
No 3
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=98.99 E-value=1.2e-09 Score=65.82 Aligned_cols=49 Identities=16% Similarity=0.298 Sum_probs=41.5
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHhhhcCC-CCCHHHHHHHHHHHHH
Q 043001 16 GPDWSSKEALILGNEIAAVEADCLKALSSYQKWKIISETCTALDV-PRTANQCRRKWDSLID 76 (121)
Q Consensus 16 ~~~Wt~~Etl~LI~~r~~~e~~~~~~~~~~~~W~~Ia~~m~~~G~-~Rs~~QCr~KW~nL~~ 76 (121)
...||.+|...|+++...+ +...|..||..|. + .||+.||+.+|.||++
T Consensus 2 r~~WT~eEd~~L~~~v~~~---------G~~~W~~Ia~~~~---~~~Rt~~qcr~Rw~~~~k 51 (53)
T 1w0t_A 2 RQAWLWEEDKNLRSGVRKY---------GEGNWSKILLHYK---FNNRTSVMLKDRWRTMKK 51 (53)
T ss_dssp CCCCCHHHHHHHHHHHHHH---------CTTCHHHHHHHSC---CSSCCHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHH---------CcCCHHHHHHHcC---CCCCCHHHHHHHHHHHHc
Confidence 3579999999999987655 4468999999974 5 5999999999999974
No 4
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=98.94 E-value=3.3e-09 Score=67.14 Aligned_cols=50 Identities=16% Similarity=0.281 Sum_probs=42.2
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHhhhcCC-CCCHHHHHHHHHHHHH
Q 043001 15 VGPDWSSKEALILGNEIAAVEADCLKALSSYQKWKIISETCTALDV-PRTANQCRRKWDSLID 76 (121)
Q Consensus 15 ~~~~Wt~~Etl~LI~~r~~~e~~~~~~~~~~~~W~~Ia~~m~~~G~-~Rs~~QCr~KW~nL~~ 76 (121)
....||.+|...|+++...+ +...|..||..|. + .||+.||+.+|.+++.
T Consensus 9 ~r~~WT~eED~~L~~~v~~~---------G~~~W~~Ia~~~~---~~~Rt~~qcr~Rw~~~l~ 59 (69)
T 1ity_A 9 KRQAWLWEEDKNLRSGVRKY---------GEGNWSKILLHYK---FNNRTSVMLKDRWRTMKK 59 (69)
T ss_dssp SCCCCCHHHHHHHHHHHHHH---------CSSCHHHHHHHSC---CSSCCHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHH---------CCCcHHHHHHHcC---cCCCCHHHHHHHHHHHcC
Confidence 34679999999999987655 4458999999985 4 7999999999999884
No 5
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=98.92 E-value=2.4e-09 Score=64.07 Aligned_cols=47 Identities=23% Similarity=0.576 Sum_probs=40.3
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHhhhcCCCCCHHHHHHHHHHHH
Q 043001 16 GPDWSSKEALILGNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLI 75 (121)
Q Consensus 16 ~~~Wt~~Etl~LI~~r~~~e~~~~~~~~~~~~W~~Ia~~m~~~G~~Rs~~QCr~KW~nL~ 75 (121)
...||.+|...|+++...+ +...|..||+.|. .||+.||+.+|.+++
T Consensus 3 ~~~Wt~eED~~L~~~v~~~---------G~~~W~~Ia~~~~----~Rt~~qcr~Rw~~~L 49 (52)
T 1guu_A 3 KTRWTREEDEKLKKLVEQN---------GTDDWKVIANYLP----NRTDVQCQHRWQKVL 49 (52)
T ss_dssp CCCCCHHHHHHHHHHHHHH---------CSSCHHHHHHTST----TCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHh---------CCCCHHHHHHHcC----CCCHHHHHHHHHHHc
Confidence 4579999999999987655 3348999999986 699999999999886
No 6
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=98.89 E-value=2.5e-09 Score=65.88 Aligned_cols=47 Identities=23% Similarity=0.543 Sum_probs=39.7
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHhhhcCCCCCHHHHHHHHHHHH
Q 043001 16 GPDWSSKEALILGNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLI 75 (121)
Q Consensus 16 ~~~Wt~~Etl~LI~~r~~~e~~~~~~~~~~~~W~~Ia~~m~~~G~~Rs~~QCr~KW~nL~ 75 (121)
...||.+|...|+++...+ ....|..||..|. .||+.||+.+|.+++
T Consensus 8 k~~Wt~eED~~L~~~v~~~---------G~~~W~~Ia~~~~----~Rt~~qcr~Rw~~~l 54 (60)
T 2d9a_A 8 KVKWTHEEDEQLRALVRQF---------GQQDWKFLASHFP----NRTDQQCQYRWLRVL 54 (60)
T ss_dssp CSCCCHHHHHHHHHHHHHT---------CTTCHHHHHHHCS----SSCHHHHHHHHHHTS
T ss_pred CCCCCHHHHHHHHHHHHHh---------CCCCHHHHHHHcc----CCCHHHHHHHHHHHc
Confidence 4579999999999987544 3358999999986 699999999999875
No 7
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.88 E-value=3e-09 Score=67.43 Aligned_cols=47 Identities=23% Similarity=0.560 Sum_probs=40.2
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHhhhcCCCCCHHHHHHHHHHHH
Q 043001 16 GPDWSSKEALILGNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLI 75 (121)
Q Consensus 16 ~~~Wt~~Etl~LI~~r~~~e~~~~~~~~~~~~W~~Ia~~m~~~G~~Rs~~QCr~KW~nL~ 75 (121)
...||.+|...|+++...+ ....|..||..|. .||++||+.+|.+++
T Consensus 9 ~~~Wt~eED~~L~~~v~~~---------G~~~W~~Ia~~l~----~Rt~~qcr~Rw~~~L 55 (70)
T 2dim_A 9 GGVWRNTEDEILKAAVMKY---------GKNQWSRIASLLH----RKSAKQCKARWYEWL 55 (70)
T ss_dssp TCCCCHHHHHHHHHHHHHT---------CSSCHHHHHHHST----TCCHHHHHHHHHHTS
T ss_pred CCCCCHHHHHHHHHHHHHH---------CcCCHHHHHHHhc----CCCHHHHHHHHHHHc
Confidence 4679999999999987644 3368999999986 799999999999865
No 8
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=98.86 E-value=2.6e-09 Score=64.02 Aligned_cols=47 Identities=21% Similarity=0.550 Sum_probs=39.5
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHhhhcCCCCCHHHHHHHHHHHH
Q 043001 16 GPDWSSKEALILGNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLI 75 (121)
Q Consensus 16 ~~~Wt~~Etl~LI~~r~~~e~~~~~~~~~~~~W~~Ia~~m~~~G~~Rs~~QCr~KW~nL~ 75 (121)
...||.+|...|+++...+ +...|..||..|. .||+.||+.+|.+++
T Consensus 3 k~~Wt~eED~~L~~~v~~~---------G~~~W~~Ia~~~~----~Rt~~qcr~Rw~~~L 49 (52)
T 1gvd_A 3 KGPWTKEEDQRLIKLVQKY---------GPKRWSVIAKHLK----GRIGKQCRERWHNHL 49 (52)
T ss_dssp CCSCCHHHHHHHHHHHHHH---------CTTCHHHHHTTST----TCCHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHHH---------CcChHHHHHHHcC----CCCHHHHHHHHHHHc
Confidence 4579999999999987654 3346999999985 799999999999865
No 9
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=98.85 E-value=7.8e-09 Score=63.85 Aligned_cols=47 Identities=15% Similarity=0.572 Sum_probs=40.0
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHhhhcCCCCCHHHHHHHHHHHH
Q 043001 16 GPDWSSKEALILGNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLI 75 (121)
Q Consensus 16 ~~~Wt~~Etl~LI~~r~~~e~~~~~~~~~~~~W~~Ia~~m~~~G~~Rs~~QCr~KW~nL~ 75 (121)
...||.+|...|+++...+ ....|..||+.|. .||+.||+.+|.+++
T Consensus 8 ~~~WT~eED~~L~~~v~~~---------G~~~W~~Ia~~~~----~Rt~~qcr~r~~~~l 54 (60)
T 1x41_A 8 DPSWTAQEEMALLEAVMDC---------GFGNWQDVANQMC----TKTKEECEKHYMKYF 54 (60)
T ss_dssp CSSSCHHHHHHHHHHHHHT---------CTTCHHHHHHHHT----TSCHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHH---------CcCcHHHHHHHhC----CCCHHHHHHHHHHHc
Confidence 4579999999999987544 3368999999996 699999999999875
No 10
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=98.84 E-value=4.6e-09 Score=68.71 Aligned_cols=57 Identities=28% Similarity=0.558 Sum_probs=45.0
Q ss_pred CCCCCcccCCC-----CCCCCCHHHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHhhhcCCCCCHHHHHHHHHHH
Q 043001 4 GSSRTRHTRSQ-----VGPDWSSKEALILGNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSL 74 (121)
Q Consensus 4 g~~~~~~~r~~-----~~~~Wt~~Etl~LI~~r~~~e~~~~~~~~~~~~W~~Ia~~m~~~G~~Rs~~QCr~KW~nL 74 (121)
|++|+++.+.. ....||.+|.+.|+++...+ . ..|..||+.|. .||+.||+.+|.+|
T Consensus 1 ~ssg~~~~~~~~~~~~~~~~WT~eEd~~Ll~~v~~~---------G-~~W~~IA~~v~----~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 1 GSSGSSGTLAKSKGASAGREWTEQETLLLLEALEMY---------K-DDWNKVSEHVG----SRTQDECILHFLRL 62 (79)
T ss_dssp CCCSSSCCCCCCCSSCCSCCCCHHHHHHHHHHHHHS---------S-SCHHHHHHHHS----SCCHHHHHHHHTTS
T ss_pred CCCcccCccCCccccccCCCcCHHHHHHHHHHHHHh---------C-CCHHHHHHHcC----CCCHHHHHHHHHHh
Confidence 56666654432 34679999999999986544 2 68999999986 69999999999876
No 11
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=98.82 E-value=1.5e-08 Score=62.30 Aligned_cols=48 Identities=21% Similarity=0.477 Sum_probs=39.9
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHhhhcCCCCCHHHHHHHHHHHH
Q 043001 16 GPDWSSKEALILGNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLI 75 (121)
Q Consensus 16 ~~~Wt~~Etl~LI~~r~~~e~~~~~~~~~~~~W~~Ia~~m~~~G~~Rs~~QCr~KW~nL~ 75 (121)
...||.+|...|+++...+ +...|..||+.|. -.||+.||+.+|.++.
T Consensus 9 ~~~WT~eED~~L~~~v~~~---------G~~~W~~IA~~~~---~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 9 DENWGADEELLLIDACETL---------GLGNWADIADYVG---NARTKEECRDHYLKTY 56 (58)
T ss_dssp CCCCCHHHHHHHHHHHHHT---------TTTCHHHHHHHHC---SSCCHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHH---------CcCCHHHHHHHHC---CCCCHHHHHHHHHHHc
Confidence 3569999999999987544 4468999999984 4699999999998763
No 12
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.68 E-value=5.9e-08 Score=62.08 Aligned_cols=53 Identities=17% Similarity=0.228 Sum_probs=40.5
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHhhhcCCCCCHHHHHHHHHHHHH
Q 043001 16 GPDWSSKEALILGNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLID 76 (121)
Q Consensus 16 ~~~Wt~~Etl~LI~~r~~~e~~~~~~~~~~~~W~~Ia~~m~~~G~~Rs~~QCr~KW~nL~~ 76 (121)
...||.+|...|+++...+ .........|..||+.|. .||+.||+.+|.+++.
T Consensus 8 ~~~WT~eEd~~L~~~v~~~----g~~~~~~~~W~~IA~~~~----~Rt~~qcr~r~~~~l~ 60 (75)
T 2yum_A 8 NQLWTVEEQKKLEQLLIKY----PPEEVESRRWQKIADELG----NRTAKQVASQVQKYFI 60 (75)
T ss_dssp SSCCCHHHHHHHHHHHHHS----CCCSCHHHHHHHHHHHHS----SSCHHHHHHHHHHHHG
T ss_pred CCCCCHHHHHHHHHHHHHh----CCCCCCcccHHHHHHHhC----CCCHHHHHHHHHHHHH
Confidence 4579999999999986543 111112379999999997 6999999999987663
No 13
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.68 E-value=7.1e-08 Score=60.35 Aligned_cols=50 Identities=26% Similarity=0.472 Sum_probs=40.3
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHH
Q 043001 16 GPDWSSKEALILGNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLIDEYKK 80 (121)
Q Consensus 16 ~~~Wt~~Etl~LI~~r~~~e~~~~~~~~~~~~W~~Ia~~m~~~G~~Rs~~QCr~KW~nL~~~Ykk 80 (121)
...||.+|...|+++...+ ...|..||+ |- | ||+.||+.+|.+++..-.+
T Consensus 9 k~~WT~eED~~L~~~~~~~----------g~~W~~Ia~-~~--g--Rt~~qcr~Rw~~~l~~~~~ 58 (66)
T 2din_A 9 KTEWSREEEEKLLHLAKLM----------PTQWRTIAP-II--G--RTAAQCLEHYEFLLDKAAQ 58 (66)
T ss_dssp CCCCCHHHHHHHHHHHHHC----------TTCHHHHHH-HH--S--SCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHc----------CCCHHHHhc-cc--C--cCHHHHHHHHHHHhChHhc
Confidence 4569999999999985432 238999999 54 3 9999999999999876544
No 14
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.67 E-value=7.9e-08 Score=61.22 Aligned_cols=48 Identities=19% Similarity=0.322 Sum_probs=40.7
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHhhhcCCCCCHHHHHHHHHHHHHH
Q 043001 16 GPDWSSKEALILGNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLIDE 77 (121)
Q Consensus 16 ~~~Wt~~Etl~LI~~r~~~e~~~~~~~~~~~~W~~Ia~~m~~~G~~Rs~~QCr~KW~nL~~~ 77 (121)
...||.+|...|+++...+ +..|..||..|. .||..||+.+|.++++.
T Consensus 9 ~~~WT~eEd~~l~~~~~~~----------G~~W~~Ia~~~~----~Rt~~q~k~r~~~~l~~ 56 (72)
T 2cu7_A 9 SVKWTIEEKELFEQGLAKF----------GRRWTKISKLIG----SRTVLQVKSYARQYFKN 56 (72)
T ss_dssp CCCCCHHHHHHHHHHHHHT----------CSCHHHHHHHHS----SSCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHH----------CcCHHHHHHHcC----CCCHHHHHHHHHHHHHH
Confidence 4679999999999987644 239999999986 69999999999988754
No 15
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=98.60 E-value=7.2e-08 Score=66.26 Aligned_cols=88 Identities=18% Similarity=0.285 Sum_probs=55.3
Q ss_pred CCCCCcccCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHhhh
Q 043001 4 GSSRTRHTRSQVGPDWSSKEALILGNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLIDEYKKIIV 83 (121)
Q Consensus 4 g~~~~~~~r~~~~~~Wt~~Etl~LI~~r~~~e~~~~~~~~~~~~W~~Ia~~m~~~G~~Rs~~QCr~KW~nL~~~Ykkikd 83 (121)
|++.+.....-....||.+|+.+|++....+ +...|..|+..+...=-.||..||++||.||++.-. +
T Consensus 1 ~s~~~~~~~rr~r~~WT~EEd~~L~~gV~k~---------G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~~-~-- 68 (105)
T 2aje_A 1 GSHMLEDPQRRIRRPFSVAEVEALVQAVEKL---------GTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAK-I-- 68 (105)
T ss_dssp --------CCCCCCSCCHHHHHHHHHHHHHH---------CSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTTT-C--
T ss_pred CCCCccccCCCCCCCCCHHHHHHHHHHHHHh---------CCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhcc-C--
Confidence 5566666666667789999999999987655 445899999865211026999999999999985310 0
Q ss_pred CCCCCCCChhhhhhcCCCCCCcHHHHH
Q 043001 84 RSRTFPKSQTQAHTDCFPPNFDRELFK 110 (121)
Q Consensus 84 ~~~syw~~~~~rk~~~LP~~fd~e~f~ 110 (121)
++..|+..-+|..|-..|-+
T Consensus 69 -------~p~~~rg~~~P~~~l~rv~~ 88 (105)
T 2aje_A 69 -------SPQQRRGEPVPQELLNRVLN 88 (105)
T ss_dssp -------CTTTTTCCSCCCHHHHHHHH
T ss_pred -------CcccccCCCCCHHHHHHHHH
Confidence 12235566777665444443
No 16
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.54 E-value=1.8e-07 Score=60.27 Aligned_cols=50 Identities=14% Similarity=0.409 Sum_probs=40.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHhhhcCCCCCHHHHHHHHHHHHH
Q 043001 17 PDWSSKEALILGNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLID 76 (121)
Q Consensus 17 ~~Wt~~Etl~LI~~r~~~e~~~~~~~~~~~~W~~Ia~~m~~~G~~Rs~~QCr~KW~nL~~ 76 (121)
..||.+|.++|+++...+ +......|..||..|- .||.+||+.+|.+|+.
T Consensus 19 ~~WT~eEd~~L~~al~~~------g~~~~~rW~~IA~~vp----GRT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 19 EPWTQNQQKLLELALQQY------PRGSSDCWDKIARCVP----SKSKEDCIARYKLLVS 68 (73)
T ss_dssp CCCCHHHHHHHHHHHHHS------CSSSHHHHHHHGGGCS----SSCHHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHHHc------CCCCCchHHHHHHHcC----CCCHHHHHHHHHHHHH
Confidence 569999999999986543 1123579999999986 6999999999999974
No 17
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=98.50 E-value=1.7e-07 Score=63.57 Aligned_cols=46 Identities=26% Similarity=0.553 Sum_probs=39.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHhhhcCCCCCHHHHHHHHHHHH
Q 043001 17 PDWSSKEALILGNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLI 75 (121)
Q Consensus 17 ~~Wt~~Etl~LI~~r~~~e~~~~~~~~~~~~W~~Ia~~m~~~G~~Rs~~QCr~KW~nL~ 75 (121)
+.||.+|...|+++...+ +...|..||+.|. .||+.||+.+|.+++
T Consensus 2 ~~Wt~eED~~L~~~v~~~---------g~~~W~~Ia~~~~----~Rt~~qcr~Rw~~~L 47 (107)
T 2k9n_A 2 VKFTEEEDLKLQQLVMRY---------GAKDWIRISQLMI----TRNPRQCRERWNNYI 47 (107)
T ss_dssp CSSCHHHHHHHHHHHHHH---------CSSCHHHHHHHTT----TSCHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHHHH---------CCCCHHHHhhhcC----CCCHHHHHHHHHHHH
Confidence 469999999999987654 3458999999986 699999999999765
No 18
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=98.50 E-value=4.4e-07 Score=61.03 Aligned_cols=59 Identities=20% Similarity=0.451 Sum_probs=47.5
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHhhhC
Q 043001 16 GPDWSSKEALILGNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLIDEYKKIIVR 84 (121)
Q Consensus 16 ~~~Wt~~Etl~LI~~r~~~e~~~~~~~~~~~~W~~Ia~~m~~~G~~Rs~~QCr~KW~nL~~~Ykkikd~ 84 (121)
...||.+|..+|+++...+ .......|..||..|- .||.+||+.+|.+|..+-+.|..+
T Consensus 8 ~~~WT~eEd~~L~~al~~~------~~~~~~rW~~IA~~vp----GRT~~q~k~ry~~l~~dv~~iesg 66 (93)
T 2cjj_A 8 GRPWSAKENKAFERALAVY------DKDTPDRWANVARAVE----GRTPEEVKKHYEILVEDIKYIESG 66 (93)
T ss_dssp CCSCCHHHHHHHHHHHHHS------CTTCTTHHHHHHHHST----TCCHHHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHHHc------CCCCCchHHHHHHHcC----CCCHHHHHHHHHHHHHHHHHhhcC
Confidence 4579999999999876433 1123579999999986 599999999999999988777663
No 19
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=98.49 E-value=7.3e-07 Score=62.73 Aligned_cols=54 Identities=15% Similarity=0.290 Sum_probs=43.2
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHhhhcCCCCCHHHHHHHHHHHHHH
Q 043001 15 VGPDWSSKEALILGNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLIDE 77 (121)
Q Consensus 15 ~~~~Wt~~Etl~LI~~r~~~e~~~~~~~~~~~~W~~Ia~~m~~~G~~Rs~~QCr~KW~nL~~~ 77 (121)
....||.+|+..|++....+ +...|..|+..+...=-.||..||++||.||++.
T Consensus 30 ~r~~WT~EEd~~L~~gV~k~---------G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~ 83 (122)
T 2roh_A 30 IRRPFTVAEVELLVEAVEHL---------GTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHT 83 (122)
T ss_dssp CCCCCCHHHHHHHHHHHHHH---------SSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHH---------CCCChHHHHHHhccccCCCCHHHHHHHHHHHHhh
Confidence 34579999999999987665 4458999999764211369999999999999864
No 20
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=98.48 E-value=3.4e-07 Score=60.35 Aligned_cols=72 Identities=17% Similarity=0.277 Sum_probs=49.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHhhhCCCCCCCChhhhhh
Q 043001 18 DWSSKEALILGNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLIDEYKKIIVRSRTFPKSQTQAHT 97 (121)
Q Consensus 18 ~Wt~~Etl~LI~~r~~~e~~~~~~~~~~~~W~~Ia~~m~~~G~~Rs~~QCr~KW~nL~~~Ykkikd~~~syw~~~~~rk~ 97 (121)
.||.+|+..|++....+ +...|..|+..-...=-.||..||++||.||++.- .+ ++..++.
T Consensus 2 ~WT~eEd~~L~~gv~k~---------G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~-~~---------~p~~~~~ 62 (83)
T 2ckx_A 2 PFSVAEVEALVEAVEHL---------GTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTA-SI---------APQQRRG 62 (83)
T ss_dssp CCCHHHHHHHHHHHHHH---------CSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHH-HS---------CGGGCCS
T ss_pred CCCHHHHHHHHHHHHHH---------CCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhc-cC---------CcccccC
Confidence 69999999999987655 44589999996221112699999999999998642 22 1122445
Q ss_pred cCCCCCCcHHH
Q 043001 98 DCFPPNFDREL 108 (121)
Q Consensus 98 ~~LP~~fd~e~ 108 (121)
..+|+.+..-|
T Consensus 63 ~~~p~~~~~rv 73 (83)
T 2ckx_A 63 EPVPQDLLDRV 73 (83)
T ss_dssp SCCCHHHHHHH
T ss_pred CCCCHHHHHHH
Confidence 66676554444
No 21
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=98.45 E-value=3e-07 Score=64.13 Aligned_cols=48 Identities=27% Similarity=0.612 Sum_probs=40.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHhhhcCCCCCHHHHHHHHHHHH
Q 043001 14 QVGPDWSSKEALILGNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLI 75 (121)
Q Consensus 14 ~~~~~Wt~~Etl~LI~~r~~~e~~~~~~~~~~~~W~~Ia~~m~~~G~~Rs~~QCr~KW~nL~ 75 (121)
.....||.+|...|+++...+ + ..|..||+.|. .||+.||+.+|.+.+
T Consensus 9 ~kk~~WT~eED~~L~~~v~~~---------G-~~W~~Ia~~~~----~Rt~~qcr~Rw~~~l 56 (126)
T 3osg_A 9 AKKQKFTPEEDEMLKRAVAQH---------G-SDWKMIAATFP----NRNARQCRDRWKNYL 56 (126)
T ss_dssp CSSCCCCHHHHHHHHHHHHHH---------T-TCHHHHHHTCT----TCCHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHHh---------C-CCHHHHHHHcC----CCCHHHHHHHHhhhc
Confidence 345679999999999987655 2 28999999876 699999999999866
No 22
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=98.45 E-value=9e-07 Score=62.18 Aligned_cols=54 Identities=17% Similarity=0.292 Sum_probs=44.0
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHhhhcCCCCCHHHHHHHHHHHHHH
Q 043001 15 VGPDWSSKEALILGNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLIDE 77 (121)
Q Consensus 15 ~~~~Wt~~Etl~LI~~r~~~e~~~~~~~~~~~~W~~Ia~~m~~~G~~Rs~~QCr~KW~nL~~~ 77 (121)
....||.+|+..|++....+ +...|..|+..+...--.||..||++||.||++.
T Consensus 16 ~r~~WT~EEd~~L~~gV~k~---------G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~ 69 (121)
T 2juh_A 16 IRRPFSVAEVEALVEAVEHL---------GTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHT 69 (121)
T ss_dssp SSCCCCHHHHHHHHHHHHHH---------GGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHH---------CCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhh
Confidence 34579999999999987665 4559999999975322369999999999999965
No 23
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=98.43 E-value=2.2e-07 Score=62.57 Aligned_cols=47 Identities=19% Similarity=0.535 Sum_probs=39.4
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHhhhcCCCCCHHHHHHHHHHHH
Q 043001 16 GPDWSSKEALILGNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLI 75 (121)
Q Consensus 16 ~~~Wt~~Etl~LI~~r~~~e~~~~~~~~~~~~W~~Ia~~m~~~G~~Rs~~QCr~KW~nL~ 75 (121)
.+.||.+|...|+++...+ +...|..||+.|. .||+.||+.+|.+++
T Consensus 4 k~~WT~eED~~L~~~v~~~---------g~~~W~~Ia~~l~----~Rt~~qcr~Rw~~~l 50 (105)
T 1gv2_A 4 KGPWTKEEDQRVIKLVQKY---------GPKRWSVIAKHLK----GRIGKQCRERWHNHL 50 (105)
T ss_dssp CSCCCHHHHHHHHHHHHHH---------CTTCHHHHHTTST----TCCHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHHh---------CCCcHHHHhhhhc----CCCHHHHHHHHHhcc
Confidence 4679999999999987544 3347999999885 799999999999864
No 24
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=98.42 E-value=4.6e-07 Score=58.40 Aligned_cols=46 Identities=15% Similarity=0.185 Sum_probs=38.7
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHhhhcCCCCCHHHHHHHHHHHHH
Q 043001 16 GPDWSSKEALILGNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLID 76 (121)
Q Consensus 16 ~~~Wt~~Etl~LI~~r~~~e~~~~~~~~~~~~W~~Ia~~m~~~G~~Rs~~QCr~KW~nL~~ 76 (121)
...||.+|...|+++...+ +..|..||+.| .||..||+.+|..|.+
T Consensus 23 k~~wT~EED~~L~~l~~~~----------G~kW~~IA~~l-----gRt~~q~knRw~~L~~ 68 (73)
T 2llk_A 23 VGKYTPEEIEKLKELRIKH----------GNDWATIGAAL-----GRSASSVKDRCRLMKD 68 (73)
T ss_dssp CCSSCHHHHHHHHHHHHHH----------SSCHHHHHHHH-----TSCHHHHHHHHHHCSC
T ss_pred CCCCCHHHHHHHHHHHHHH----------CCCHHHHHHHh-----CCCHHHHHHHHHHHHH
Confidence 4579999999999987655 34599999998 4999999999997753
No 25
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=98.29 E-value=8.3e-07 Score=61.78 Aligned_cols=47 Identities=19% Similarity=0.509 Sum_probs=39.2
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHhhhcCCCCCHHHHHHHHHHHH
Q 043001 16 GPDWSSKEALILGNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLI 75 (121)
Q Consensus 16 ~~~Wt~~Etl~LI~~r~~~e~~~~~~~~~~~~W~~Ia~~m~~~G~~Rs~~QCr~KW~nL~ 75 (121)
...||.+|...|+++...+ +...|..||+.|. .||+.||+.+|.+++
T Consensus 27 k~~Wt~eED~~L~~~v~~~---------g~~~W~~Ia~~l~----~Rt~~qcr~Rw~~~l 73 (128)
T 1h8a_C 27 KGPWTKEEDQRVIEHVQKY---------GPKRWSDIAKHLK----GRIGKQCRERWHNHL 73 (128)
T ss_dssp CSCCCHHHHHHHHHHHHHT---------CSCCHHHHHHHSS----SCCHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHHH---------CCCCHHHHHHHhc----CCcHHHHHHHHHHhc
Confidence 4579999999999986544 3347999999986 799999999999865
No 26
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.28 E-value=2.6e-06 Score=54.66 Aligned_cols=51 Identities=18% Similarity=0.371 Sum_probs=41.0
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHhhhcCCCCCHHHHHHHHHHHHHH
Q 043001 16 GPDWSSKEALILGNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLIDE 77 (121)
Q Consensus 16 ~~~Wt~~Etl~LI~~r~~~e~~~~~~~~~~~~W~~Ia~~m~~~G~~Rs~~QCr~KW~nL~~~ 77 (121)
...||.+|...|+++.... . .....+|+.||+.| | ||++||+.+|+.|..+
T Consensus 8 ~~~WT~eE~k~fe~al~~~----p--~~t~~RW~~IA~~l---g--Rt~~eV~~~y~~L~~d 58 (72)
T 2cqq_A 8 APEWTEEDLSQLTRSMVKF----P--GGTPGRWEKIAHEL---G--RSVTDVTTKAKQLKDS 58 (72)
T ss_dssp CCCCCHHHHHHHHHHHHHS----C--TTCTTHHHHHHHHH---T--SCHHHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHHHC----C--CCCCcHHHHHHHHh---C--CCHHHHHHHHHHHHHh
Confidence 5679999999999986533 1 11247899999998 3 9999999999999866
No 27
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=98.27 E-value=3.1e-07 Score=64.39 Aligned_cols=47 Identities=19% Similarity=0.413 Sum_probs=39.6
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHhhhcCCCCCHHHHHHHHHHHH
Q 043001 16 GPDWSSKEALILGNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLI 75 (121)
Q Consensus 16 ~~~Wt~~Etl~LI~~r~~~e~~~~~~~~~~~~W~~Ia~~m~~~G~~Rs~~QCr~KW~nL~ 75 (121)
.+.||.+|...|+++...+ +...|..||..|- .||+.||+.+|.+.+
T Consensus 2 Kg~Wt~eED~~L~~~v~~~---------g~~~W~~Ia~~~~----~Rt~~qcr~Rw~~~l 48 (131)
T 3zqc_A 2 KGPFTEAEDDLIREYVKEN---------GPQNWPRITSFLP----NRSPKQCRERWFNHL 48 (131)
T ss_dssp CSSCCHHHHHHHHHHHHHH---------CSCCGGGGTTSCT----TSCHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHh---------CcCCHHHHHHHHC----CCCHHHHHHHHhhcc
Confidence 3579999999999987654 3457999999885 699999999999876
No 28
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=98.26 E-value=2.1e-06 Score=58.14 Aligned_cols=48 Identities=27% Similarity=0.520 Sum_probs=41.2
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHhhhcCCCCCHHHHHHHHHHHHHH
Q 043001 16 GPDWSSKEALILGNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLIDE 77 (121)
Q Consensus 16 ~~~Wt~~Etl~LI~~r~~~e~~~~~~~~~~~~W~~Ia~~m~~~G~~Rs~~QCr~KW~nL~~~ 77 (121)
...||.+|...|+++...+ +..|..||..|- .||..||+.+|.+|++.
T Consensus 53 ~~~WT~eEd~~L~~~~~~~----------G~~W~~Ia~~l~----gRt~~~~k~rw~~l~r~ 100 (107)
T 2k9n_A 53 TDPWSPEEDMLLDQKYAEY----------GPKWNKISKFLK----NRSDNNIRNRWMMIARH 100 (107)
T ss_dssp TCCCCHHHHHHHHHHHHHT----------CSCHHHHHHHHS----SSCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHHHHh----------CcCHHHHHHHCC----CCCHHHHHHHHHHHHhh
Confidence 4679999999999987544 247999999985 79999999999999865
No 29
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=98.17 E-value=3e-06 Score=59.00 Aligned_cols=48 Identities=21% Similarity=0.500 Sum_probs=40.7
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHhhhcCCCCCHHHHHHHHHHHHHH
Q 043001 16 GPDWSSKEALILGNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLIDE 77 (121)
Q Consensus 16 ~~~Wt~~Etl~LI~~r~~~e~~~~~~~~~~~~W~~Ia~~m~~~G~~Rs~~QCr~KW~nL~~~ 77 (121)
...||.+|...|+++...+ +..|..||+.|- .||..||+.+|.+|++.
T Consensus 62 ~~~WT~eEd~~L~~~v~~~----------G~~W~~Ia~~l~----gRt~~~~k~rw~~l~~k 109 (126)
T 3osg_A 62 HTPWTAEEDALLVQKIQEY----------GRQWAIIAKFFP----GRTDIHIKNRWVTISNK 109 (126)
T ss_dssp CSCCCHHHHHHHHHHHHHH----------CSCHHHHHTTST----TCCHHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHH----------CcCHHHHHHHcC----CCCHHHHHHHHHHHHHh
Confidence 4579999999999987655 257999999875 69999999999998854
No 30
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=98.16 E-value=1.9e-06 Score=57.88 Aligned_cols=47 Identities=21% Similarity=0.461 Sum_probs=39.8
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHhhhcCCCCCHHHHHHHHHHHHH
Q 043001 16 GPDWSSKEALILGNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLID 76 (121)
Q Consensus 16 ~~~Wt~~Etl~LI~~r~~~e~~~~~~~~~~~~W~~Ia~~m~~~G~~Rs~~QCr~KW~nL~~ 76 (121)
...||.+|...|+++...+ +..|..||+.|- .||..||+.+|.+|++
T Consensus 56 ~~~Wt~eEd~~L~~~~~~~----------G~~W~~Ia~~l~----gRt~~~~k~rw~~~~~ 102 (105)
T 1gv2_A 56 KTSWTEEEDRIIYQAHKRL----------GNRWAEIAKLLP----GRTDNAIKNHWNSTMR 102 (105)
T ss_dssp CCCCCHHHHHHHHHHHHHH----------SSCHHHHHTTCT----TCCHHHHHHHHHHHTC
T ss_pred ccCCCHHHHHHHHHHHHHh----------CCCHHHHHHHcC----CCCHHHHHHHHHHHHh
Confidence 4579999999999987655 357999999875 6999999999998864
No 31
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=97.41 E-value=3.2e-07 Score=60.84 Aligned_cols=49 Identities=14% Similarity=0.278 Sum_probs=41.5
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHH
Q 043001 16 GPDWSSKEALILGNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLIDEY 78 (121)
Q Consensus 16 ~~~Wt~~Etl~LI~~r~~~e~~~~~~~~~~~~W~~Ia~~m~~~G~~Rs~~QCr~KW~nL~~~Y 78 (121)
...||.+|...||++...+ +..|..||..|. .||..||+.+|.++++.+
T Consensus 16 ~~~WT~eEd~~l~~~~~~~----------G~~W~~IA~~l~----gRt~~q~k~r~~~~lrk~ 64 (89)
T 2ltp_A 16 FQGWTEEEMGTAKKGLLEH----------GRNWSAIARMVG----SKTVSQCKNFYFNYKKRQ 64 (89)
Confidence 4579999999999987654 236999999986 799999999999988664
No 32
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=98.05 E-value=4.8e-06 Score=59.77 Aligned_cols=47 Identities=19% Similarity=0.535 Sum_probs=39.3
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHhhhcCCCCCHHHHHHHHHHHH
Q 043001 16 GPDWSSKEALILGNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLI 75 (121)
Q Consensus 16 ~~~Wt~~Etl~LI~~r~~~e~~~~~~~~~~~~W~~Ia~~m~~~G~~Rs~~QCr~KW~nL~ 75 (121)
...||.+|...|+++...+ +...|..||..|. .||+.||+.+|.+++
T Consensus 58 ~~~Wt~eEd~~L~~~v~~~---------g~~~W~~Ia~~l~----~Rt~~qcr~Rw~~~l 104 (159)
T 1h89_C 58 KGPWTKEEDQRVIKLVQKY---------GPKRWSVIAKHLK----GRIGKQCRERWHNHL 104 (159)
T ss_dssp CSCCCHHHHHHHHHHHHHH---------CSCCHHHHHHTST----TCCHHHHHHHHHHTT
T ss_pred CCCCChHHHHHHHHHHHHh---------CcccHHHHHHHcC----CCCHHHHHHHHHHHh
Confidence 4679999999999987544 3346999999985 699999999999865
No 33
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=97.95 E-value=8.5e-07 Score=63.75 Aligned_cols=47 Identities=23% Similarity=0.576 Sum_probs=8.7
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHhhhcCCCCCHHHHHHHHHHHH
Q 043001 16 GPDWSSKEALILGNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLI 75 (121)
Q Consensus 16 ~~~Wt~~Etl~LI~~r~~~e~~~~~~~~~~~~W~~Ia~~m~~~G~~Rs~~QCr~KW~nL~ 75 (121)
...||.+|...|+++...+ +...|..||+.|. .||+.||+.+|.+++
T Consensus 6 k~~Wt~eED~~L~~~v~~~---------g~~~W~~Ia~~l~----~Rt~~qcr~Rw~~~l 52 (159)
T 1h89_C 6 KTRWTREEDEKLKKLVEQN---------GTDDWKVIANYLP----NRTDVQCQHRWQKVL 52 (159)
T ss_dssp --------------------------------------------------CHHHHHHTTT
T ss_pred CCCCCHHHHHHHHHHHHHh---------CCCCHHHHHHHcC----CCCHHHHHHHHHHcc
Confidence 4579999999999987544 3457999999986 699999999998764
No 34
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.94 E-value=3.7e-05 Score=47.37 Aligned_cols=55 Identities=18% Similarity=0.291 Sum_probs=42.6
Q ss_pred CCCCCcccCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHhhhcCCCCCHHHHHHHHHH
Q 043001 4 GSSRTRHTRSQVGPDWSSKEALILGNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDS 73 (121)
Q Consensus 4 g~~~~~~~r~~~~~~Wt~~Etl~LI~~r~~~e~~~~~~~~~~~~W~~Ia~~m~~~G~~Rs~~QCr~KW~n 73 (121)
|++++.+.| .....||.+|..+|++....+ ...|..||..|- .||..||...|..
T Consensus 1 ~~~~~~~~r-~~~~~WT~eE~~~F~~~~~~~----------gk~w~~Ia~~l~----~rt~~~~v~~Yy~ 55 (61)
T 2eqr_A 1 GSSGSSGDR-QFMNVWTDHEKEIFKDKFIQH----------PKNFGLIASYLE----RKSVPDCVLYYYL 55 (61)
T ss_dssp CCCSCCCCC-SCCCSCCHHHHHHHHHHHHHS----------TTCHHHHHHHCT----TSCHHHHHHHHHH
T ss_pred CCCcccccc-ccCCCCCHHHHHHHHHHHHHh----------CCCHHHHHHHcC----CCCHHHHHHHHHH
Confidence 445565566 456779999999999987544 348999998876 7999999987754
No 35
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=97.93 E-value=5e-06 Score=58.10 Aligned_cols=47 Identities=23% Similarity=0.485 Sum_probs=39.4
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHhhhcCCCCCHHHHHHHHHHHHH
Q 043001 16 GPDWSSKEALILGNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLID 76 (121)
Q Consensus 16 ~~~Wt~~Etl~LI~~r~~~e~~~~~~~~~~~~W~~Ia~~m~~~G~~Rs~~QCr~KW~nL~~ 76 (121)
...||.+|...|+++...+ +..|..||..|- .||..||+.+|.++++
T Consensus 54 ~~~Wt~eEd~~L~~~~~~~----------G~~W~~Ia~~l~----gRt~~~~k~rw~~~l~ 100 (131)
T 3zqc_A 54 KHAWTPEEDETIFRNYLKL----------GSKWSVIAKLIP----GRTDNAIKNRWNSSIS 100 (131)
T ss_dssp CSCCCHHHHHHHHHHHHHS----------CSCHHHHTTTST----TCCHHHHHHHHHHTTG
T ss_pred CCCCCHHHHHHHHHHHHHH----------CcCHHHHHHHcC----CCCHHHHHHHHHHHHH
Confidence 3579999999999986544 357999999875 6999999999998874
No 36
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=97.93 E-value=5.5e-06 Score=57.57 Aligned_cols=47 Identities=21% Similarity=0.468 Sum_probs=39.7
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHhhhcCCCCCHHHHHHHHHHHHH
Q 043001 16 GPDWSSKEALILGNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLID 76 (121)
Q Consensus 16 ~~~Wt~~Etl~LI~~r~~~e~~~~~~~~~~~~W~~Ia~~m~~~G~~Rs~~QCr~KW~nL~~ 76 (121)
...||.+|...|+++...+ +..|..||+.|- .||..||+.+|.+|++
T Consensus 79 ~~~WT~eEd~~L~~~~~~~----------G~~W~~Ia~~l~----gRt~~~~k~r~~~~~~ 125 (128)
T 1h8a_C 79 KTSWTEEEDRIIYQAHKRL----------GNRWAEIAKLLP----GRTDNAVKNHWNSTMR 125 (128)
T ss_dssp CSCCCHHHHHHHHHHHHHH----------CSCHHHHGGGST----TCCHHHHHHHHHTTTT
T ss_pred cccCCHHHHHHHHHHHHHH----------CcCHHHHHHHCC----CCCHHHHHHHHHHHHh
Confidence 4679999999999987655 357999999875 6999999999998764
No 37
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=97.79 E-value=5.5e-05 Score=48.68 Aligned_cols=50 Identities=20% Similarity=0.392 Sum_probs=38.6
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHhhhcCCCCCHHHHHHHHHHHH
Q 043001 16 GPDWSSKEALILGNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLI 75 (121)
Q Consensus 16 ~~~Wt~~Etl~LI~~r~~~e~~~~~~~~~~~~W~~Ia~~m~~~G~~Rs~~QCr~KW~nL~ 75 (121)
...||.+|.++|.++.... .......|+.||+.+- .||+.+|+.++..|.
T Consensus 8 ~~~WT~eE~k~fe~ALa~~------~~~tp~rWe~IA~~V~----gKT~eE~~~hY~~l~ 57 (73)
T 1wgx_A 8 DKEWNEKELQKLHCAFASL------PKHKPGFWSEVAAAVG----SRSPEECQRKYMENP 57 (73)
T ss_dssp SSCCCHHHHHHHHHHHHHS------CSSSSSHHHHHHHHTT----TSCHHHHHHHHHHSS
T ss_pred CCCCCHHHHHHHHHHHHHC------CCCCccHHHHHHHHcC----CCCHHHHHHHHHHHH
Confidence 3579999999999876433 1123568999999976 499999999887664
No 38
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=97.61 E-value=0.00011 Score=45.87 Aligned_cols=50 Identities=20% Similarity=0.270 Sum_probs=40.0
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHhhhcCCCCCHHHHHHHHHHHHH
Q 043001 16 GPDWSSKEALILGNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLID 76 (121)
Q Consensus 16 ~~~Wt~~Etl~LI~~r~~~e~~~~~~~~~~~~W~~Ia~~m~~~G~~Rs~~QCr~KW~nL~~ 76 (121)
...||.+|+..|++....+ +. .|..|+..-.- =-.||.-.-++||.||.+
T Consensus 8 r~~WT~EE~~~L~~gV~k~---------G~-~W~~I~~~y~f-~~~RT~VdLKdk~r~L~k 57 (62)
T 1x58_A 8 RKDFTKEEVNYLFHGVKTM---------GN-HWNSILWSFPF-QKGRRAVDLAHKYHRLIS 57 (62)
T ss_dssp SSSCCHHHHHHHHHHHHHH---------CS-CHHHHHHHSCC-CTTCCHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHH---------hH-hHHHHHHhCCC-ccCcccchHHHHHHHHHh
Confidence 4579999999999987766 33 89999975321 127999999999999974
No 39
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=97.42 E-value=7.6e-05 Score=57.85 Aligned_cols=54 Identities=11% Similarity=0.171 Sum_probs=40.8
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHhhhcCCCCCHHHHHHHHHHHHHH
Q 043001 16 GPDWSSKEALILGNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLIDE 77 (121)
Q Consensus 16 ~~~Wt~~Etl~LI~~r~~~e~~~~~~~~~~~~W~~Ia~~m~~~G~~Rs~~QCr~KW~nL~~~ 77 (121)
...||.+|...||++.+.+ .....+...|.+||..|- .||+.|||.+|.++++.
T Consensus 8 k~~FT~EED~~Ile~v~k~----Gn~r~ghk~W~~IAk~Lp----GRT~nsIRnRw~~~L~~ 61 (246)
T 1ign_A 8 KASFTDEEDEFILDVVRKN----PTRRTTHTLYDEISHYVP----NHTGNSIRHRFRVYLSK 61 (246)
T ss_dssp CCCCCHHHHHHHHHHHHTS----GGGTTCSHHHHHHTTTST----TSCHHHHHHHHHHTTGG
T ss_pred CCCCCHHHHHHHHHHHHHh----CcCccccccHHHHHHHcC----CCCHHHHHHHHHHHHhh
Confidence 4579999999999986543 111112345999999887 79999999999997743
No 40
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=96.94 E-value=0.0012 Score=50.87 Aligned_cols=49 Identities=14% Similarity=0.267 Sum_probs=40.8
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHhhhcCCCCCHHHHHHHHHHHHHH
Q 043001 15 VGPDWSSKEALILGNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLIDE 77 (121)
Q Consensus 15 ~~~~Wt~~Etl~LI~~r~~~e~~~~~~~~~~~~W~~Ia~~m~~~G~~Rs~~QCr~KW~nL~~~ 77 (121)
...+||.+|.+.|+++.+.+ +..|..||+.+. .||..||+.-|.+..+.
T Consensus 132 ~s~~WTeEE~~lFleAl~kY----------GKDW~~IAk~Vg----TKT~~QcKnfY~~~kKR 180 (235)
T 2iw5_B 132 CNARWTTEEQLLAVQAIRKY----------GRDFQAISDVIG----NKSVVQVKNFFVNYRRR 180 (235)
T ss_dssp CCSSCCHHHHHHHHHHHHHH----------SSCHHHHHHHHS----SCCHHHHHHHHHHTTTT
T ss_pred cCCCCCHHHHHHHHHHHHHH----------CcCHHHHHHHcC----CCCHHHHHHHHHHHHHH
Confidence 35689999999999987655 346999999987 79999999999876655
No 41
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=96.21 E-value=0.037 Score=36.96 Aligned_cols=58 Identities=10% Similarity=0.225 Sum_probs=48.2
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHhhh
Q 043001 15 VGPDWSSKEALILGNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLIDEYKKIIV 83 (121)
Q Consensus 15 ~~~~Wt~~Etl~LI~~r~~~e~~~~~~~~~~~~W~~Ia~~m~~~G~~Rs~~QCr~KW~nL~~~Ykkikd 83 (121)
.---||++|...++.+ |+......+.|..||+.|. +|++.|-..+|.-|++-|.+...
T Consensus 32 ~VvlWTRe~DR~IL~~-------cQ~~G~s~~tFa~iA~~L~----Nks~nqV~~RFq~Lm~Lf~~~~~ 89 (95)
T 1ug2_A 32 KVVLWTREADRVILTM-------CQEQGAQPHTFSVISQQLG----NKTPVEVSHRFRELMQLFHTACE 89 (95)
T ss_dssp CCSSSCHHHHHHHHHH-------HHHTTSCTTTHHHHHHHHS----SCCHHHHHHHHHHHHHHHHHCSS
T ss_pred EEEEeccccCHHHHHH-------HHhcCCChhHHHHHHHHHc----cCCHHHHHHHHHHHHHHHHHHhc
Confidence 3356999999988876 3444455779999999998 89999999999999999988654
No 42
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=96.03 E-value=0.026 Score=37.61 Aligned_cols=56 Identities=9% Similarity=0.192 Sum_probs=46.4
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHhhhcCC-CCCHHHHHHHHHHHHHHHHHhh
Q 043001 17 PDWSSKEALILGNEIAAVEADCLKALSSYQKWKIISETCTALDV-PRTANQCRRKWDSLIDEYKKII 82 (121)
Q Consensus 17 ~~Wt~~Etl~LI~~r~~~e~~~~~~~~~~~~W~~Ia~~m~~~G~-~Rs~~QCr~KW~nL~~~Ykkik 82 (121)
+.||.+||..|+++-... ..+|-.|++...-.++ .||..+=+.++..+.+...+.+
T Consensus 31 ~~WTkEETd~Lf~L~~~f----------dlRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~~~r 87 (93)
T 3hm5_A 31 DAWTKAETDHLFDLSRRF----------DLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVR 87 (93)
T ss_dssp TTBCHHHHHHHHHHHHHT----------TTCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHh----------CCCeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 689999999999986533 5589999999875443 6999999999999998877665
No 43
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=96.00 E-value=0.0066 Score=37.08 Aligned_cols=52 Identities=6% Similarity=0.176 Sum_probs=40.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHhhcchhhhHHHHHH-HhhhcCCCCCHHHHHHHHHH
Q 043001 17 PDWSSKEALILGNEIAAVEADCLKALSSYQKWKIISE-TCTALDVPRTANQCRRKWDS 73 (121)
Q Consensus 17 ~~Wt~~Etl~LI~~r~~~e~~~~~~~~~~~~W~~Ia~-~m~~~G~~Rs~~QCr~KW~n 73 (121)
..+|.+|..+|+....+.... ....++..+|+++++ .+- .+|..+||++|.+
T Consensus 3 ~~FT~edD~~L~~~v~~~~~~-~~~~~Gn~iwk~la~~~~~----~HtwqSwRdRy~k 55 (59)
T 1fex_A 3 IAFTDADDVAILTYVKENARS-PSSVTGNALWKAMEKSSLT----QHSWQSLKDRYLK 55 (59)
T ss_dssp CCCCHHHHHHHHHHHHHTCCS-TTTTTSSHHHHHHHHSCSS----SCCSHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhccc-cCCCccHHHHHHHHHhHCC----CCCHHHHHHHHHH
Confidence 459999999999987655321 134457789999999 543 8999999999975
No 44
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=95.65 E-value=0.018 Score=48.48 Aligned_cols=44 Identities=16% Similarity=0.308 Sum_probs=36.9
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHhhhcCCCCCHHHHHHHHH
Q 043001 15 VGPDWSSKEALILGNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWD 72 (121)
Q Consensus 15 ~~~~Wt~~Etl~LI~~r~~~e~~~~~~~~~~~~W~~Ia~~m~~~G~~Rs~~QCr~KW~ 72 (121)
...+||.+|.+.|++....+ +..|..||+.+. .||..||+.-+.
T Consensus 379 ~~~~WT~eE~~~f~~al~~y----------Gkdw~~IA~~Vg----TKT~~Qvk~fy~ 422 (482)
T 2xag_B 379 CNARWTTEEQLLAVQAIRKY----------GRDFQAISDVIG----NKSVVQVKNFFV 422 (482)
T ss_dssp CCSCCCHHHHHHHHHHHHHH----------TTCHHHHHHHHS----SCCHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHH----------CcCHHHHHHHhC----CCCHHHHHHHHH
Confidence 46789999999999987655 337999999987 899999998653
No 45
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=93.65 E-value=0.0058 Score=38.79 Aligned_cols=55 Identities=16% Similarity=0.302 Sum_probs=44.5
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHhh
Q 043001 16 GPDWSSKEALILGNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLIDEYKKII 82 (121)
Q Consensus 16 ~~~Wt~~Etl~LI~~r~~~e~~~~~~~~~~~~W~~Ia~~m~~~G~~Rs~~QCr~KW~nL~~~Ykkik 82 (121)
---||++|...++.. |+........|..||+.| +||+.|-..++.-|++-|++-|
T Consensus 14 vvlWTReeDR~IL~~-------cq~~G~s~~tfa~iA~~L-----nks~~QV~~RF~~Lm~Lf~kSk 68 (70)
T 2lr8_A 14 IILWTRNDDRVILLE-------CQKRGPSSKTFAYLAAKL-----DKNPNQVSERFQQLMKLFEKSK 68 (70)
Confidence 346999999988865 444444567999999887 4999999999999999998754
No 46
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.76 E-value=0.19 Score=30.64 Aligned_cols=40 Identities=8% Similarity=0.091 Sum_probs=31.2
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHH-hhhcCCCCCHHHHHH
Q 043001 16 GPDWSSKEALILGNEIAAVEADCLKALSSYQKWKIISET-CTALDVPRTANQCRR 69 (121)
Q Consensus 16 ~~~Wt~~Etl~LI~~r~~~e~~~~~~~~~~~~W~~Ia~~-m~~~G~~Rs~~QCr~ 69 (121)
.+.||.+|...+.+....+ ...|..|+.. +. .||..||..
T Consensus 9 ~~~WT~eE~~~Fe~~l~~y----------GKdf~~I~~~~v~----~Kt~~~~v~ 49 (63)
T 2yqk_A 9 EKCWTEDEVKRFVKGLRQY----------GKNFFRIRKELLP----NKETGELIT 49 (63)
T ss_dssp CCSCCHHHHHHHHHHHHHT----------CSCHHHHHHHSCT----TSCHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHHh----------CccHHHHHHHHcC----CCcHHHHHH
Confidence 4789999999998876544 2259999985 54 699999964
No 47
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=92.83 E-value=0.48 Score=31.47 Aligned_cols=58 Identities=9% Similarity=0.177 Sum_probs=45.7
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHhhhcC-CCCCHHHHHHHHHHHHHHHHHhhh
Q 043001 16 GPDWSSKEALILGNEIAAVEADCLKALSSYQKWKIISETCTALD-VPRTANQCRRKWDSLIDEYKKIIV 83 (121)
Q Consensus 16 ~~~Wt~~Etl~LI~~r~~~e~~~~~~~~~~~~W~~Ia~~m~~~G-~~Rs~~QCr~KW~nL~~~Ykkikd 83 (121)
.+.||.+||..|+++-+.. .-+|-.|++.-.-.+ -.||..+=+.++-.+.+..-+++.
T Consensus 30 ~~~WT~eETd~LfdLc~~f----------dlRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~~r~ 88 (93)
T 4iej_A 30 DDAWTKAETDHLFDLSRRF----------DLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVRA 88 (93)
T ss_dssp BTTBCHHHHHHHHHHHHHT----------TTCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHc----------CCCeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHHhhC
Confidence 3689999999999985533 448999999875332 379999999999999887776654
No 48
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=90.65 E-value=0.014 Score=37.49 Aligned_cols=46 Identities=15% Similarity=0.399 Sum_probs=33.1
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHhhhcCCCCCHHHHHHH
Q 043001 15 VGPDWSSKEALILGNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRK 70 (121)
Q Consensus 15 ~~~~Wt~~Etl~LI~~r~~~e~~~~~~~~~~~~W~~Ia~~m~~~G~~Rs~~QCr~K 70 (121)
.+..||.+|.++|-++.+.. ......+|+.||+.+- .||+.+|+..
T Consensus 19 ss~~WT~eE~K~FE~ALa~y------p~~tpdRWekIA~~Vp----GKT~eEVk~h 64 (74)
T 4eef_G 19 SGRPWKFSENIAFEIALSFT------NKDTPDRWKKVAQYVK----GRTPEEVKKH 64 (74)
T ss_dssp ---CCCTTHHHHHHHHTSSS------CSSCCSSSTTTGGGSC----SSCHHHHHGG
T ss_pred CCCCCCHHHHHHHHHHHHHC------CCCCCcHHHHHHHHcC----CCCHHHHHHH
Confidence 35679999999998875322 1234679999999876 4999999864
No 49
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=87.74 E-value=0.61 Score=30.60 Aligned_cols=40 Identities=15% Similarity=0.258 Sum_probs=31.5
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHhhhcCCCCCHHHHHH
Q 043001 16 GPDWSSKEALILGNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRR 69 (121)
Q Consensus 16 ~~~Wt~~Etl~LI~~r~~~e~~~~~~~~~~~~W~~Ia~~m~~~G~~Rs~~QCr~ 69 (121)
...||.+|..++.+....+ ...|..||+.|. .||..||-.
T Consensus 43 ~~~WT~eE~~~F~~~~~~~----------gK~F~~Ia~~l~----~Kt~~~cV~ 82 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQH----------PKNFGLIASFLE----RKTVAECVL 82 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHS----------TTCHHHHHHTCT----TCCHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHc----------CCCHHHHHHHcC----CCCHHHHHH
Confidence 4679999999998876433 346999988776 799999964
No 50
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=83.26 E-value=1.9 Score=26.57 Aligned_cols=42 Identities=12% Similarity=0.178 Sum_probs=31.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHH-hhhcCCCCCHHHHHH
Q 043001 14 QVGPDWSSKEALILGNEIAAVEADCLKALSSYQKWKIISET-CTALDVPRTANQCRR 69 (121)
Q Consensus 14 ~~~~~Wt~~Etl~LI~~r~~~e~~~~~~~~~~~~W~~Ia~~-m~~~G~~Rs~~QCr~ 69 (121)
.....||.+|...+.+....+ ...|..|+.. +. .||..||..
T Consensus 6 ~~~~~WT~eE~~~Fe~~l~~y----------GKdf~~I~~~~v~----~Kt~~~~v~ 48 (70)
T 2crg_A 6 SGMEEWSASEACLFEEALEKY----------GKDFNDIRQDFLP----WKSLTSIIE 48 (70)
T ss_dssp CSSCCCCHHHHHHHHHHHHHT----------CSCHHHHHHTTCS----SSCHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHh----------CccHHHHHHHHcC----CCCHHHHHH
Confidence 345679999999998876544 2258999974 54 699999975
No 51
>2kwv_A RAD30 homolog B, DNA polymerase IOTA; ubiquitin-binding motif, UBM, TL protein binding-signaling protein complex; HET: DNA; NMR {Mus musculus}
Probab=78.21 E-value=0.2 Score=29.39 Aligned_cols=18 Identities=28% Similarity=0.589 Sum_probs=14.7
Q ss_pred hhhcCCCCCCcHHHHHHH
Q 043001 95 AHTDCFPPNFDRELFKAI 112 (121)
Q Consensus 95 rk~~~LP~~fd~e~f~~l 112 (121)
+--..||++.|.|||.+|
T Consensus 7 ~p~~~lP~~VD~eVF~~L 24 (48)
T 2kwv_A 7 LPLQALPEGVDQEVFKQL 24 (48)
T ss_dssp CCTTSSCTTCCGGGTTTS
T ss_pred CccccCCCCCCHHHHHHC
Confidence 334689999999999876
No 52
>2c9l_Y EB1, zebra, BZLF1 trans-activator protein; viral protein, epstein-BARR virus, EBV; 2.25A {Human herpesvirus 4} SCOP: h.1.3.1 PDB: 2c9n_Y
Probab=77.69 E-value=2.2 Score=25.78 Aligned_cols=20 Identities=25% Similarity=0.635 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q 043001 64 ANQCRRKWDSLIDEYKKIIV 83 (121)
Q Consensus 64 ~~QCr~KW~nL~~~Ykkikd 83 (121)
+..|+.|++||+..|+.|-.
T Consensus 13 srk~rakfkn~lqh~r~vaa 32 (63)
T 2c9l_Y 13 ARKSRAKFKQLLQHYREVAA 32 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45899999999999998864
No 53
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=42.48 E-value=56 Score=19.81 Aligned_cols=49 Identities=8% Similarity=-0.002 Sum_probs=35.8
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHhhhcCCCCCHHHHHHHHHH
Q 043001 16 GPDWSSKEALILGNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDS 73 (121)
Q Consensus 16 ~~~Wt~~Etl~LI~~r~~~e~~~~~~~~~~~~W~~Ia~~m~~~G~~Rs~~QCr~KW~n 73 (121)
.-+||.+....++++...+ + .....++.|.+.|...|. |..|.++....
T Consensus 7 r~~WT~elH~~Fv~Av~~L------G-~~~AtPk~Il~~M~v~gL--T~~~VkSHLQK 55 (64)
T 1irz_A 7 RVLWTHELHNKFLAAVDHL------G-VERAVPKKILDLMNVDKL--TRENVASHLQK 55 (64)
T ss_dssp SCSSCHHHHHHHHHHHHHH------C-TTTCCHHHHHHHHCCTTC--CHHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHHh------C-CCCCCcHHHHHHcCCCCC--CHHHHHHHHHH
Confidence 4579999999999986543 1 245678999999997664 66666665543
No 54
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=33.21 E-value=1.4e+02 Score=22.72 Aligned_cols=33 Identities=21% Similarity=0.296 Sum_probs=28.0
Q ss_pred hhHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHhhh
Q 043001 46 QKWKIISETCTALDVPRTANQCRRKWDSLIDEYKKIIV 83 (121)
Q Consensus 46 ~~W~~Ia~~m~~~G~~Rs~~QCr~KW~nL~~~Ykkikd 83 (121)
..|..||+..- .||...-|.+|..+++.| .|.+
T Consensus 172 ~~fk~ia~~~P----~HT~~SWRdRyrKfl~~~-gi~~ 204 (246)
T 1ign_A 172 EFFKHFAEEHA----AHTENAWRDRFRKFLLAY-GIDD 204 (246)
T ss_dssp THHHHHHHHTT----TSCHHHHHHHHHHTHHHH-CHHH
T ss_pred HHHHHHHHHCC----CCChhhHHHHHHHHHhhc-ChHH
Confidence 48999999977 799999999999888877 5544
No 55
>2oy9_A UPF0223 protein BH2638; PFAM, structural genomics, PSI-2, protein structure initiative; 1.60A {Bacillus halodurans c-125} SCOP: a.276.1.1
Probab=28.77 E-value=90 Score=20.60 Aligned_cols=23 Identities=26% Similarity=0.426 Sum_probs=18.5
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHH
Q 043001 16 GPDWSSKEALILGNEIAAVEADC 38 (121)
Q Consensus 16 ~~~Wt~~Etl~LI~~r~~~e~~~ 38 (121)
.+.||.+|+...|+....+|.-.
T Consensus 10 d~dWSteEii~Vi~F~~~VE~AY 32 (98)
T 2oy9_A 10 SLDWSTEEVIDVVHFFQAIEQAY 32 (98)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHH
Confidence 46799999999999887776543
No 56
>2hzd_A Transcriptional enhancer factor TEF-1; DNA-binding, helix-turn-helix, gene regulation; NMR {Homo sapiens}
Probab=28.36 E-value=69 Score=20.43 Aligned_cols=62 Identities=13% Similarity=0.120 Sum_probs=40.4
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHH------HH-hhcchhhhHHHHHHHhh-hcCCCCCHHHHHHHHHHHHHH
Q 043001 15 VGPDWSSKEALILGNEIAAVEAD------CL-KALSSYQKWKIISETCT-ALDVPRTANQCRRKWDSLIDE 77 (121)
Q Consensus 15 ~~~~Wt~~Etl~LI~~r~~~e~~------~~-~~~~~~~~W~~Ia~~m~-~~G~~Rs~~QCr~KW~nL~~~ 77 (121)
....|+.+=-.+|+++....-.. +. .++ ..-.=+.||+++. ..|-.||.+|+-+....|.+.
T Consensus 5 ~e~vW~~~lE~aF~eaL~~yp~~g~~k~~ls~~gk-~~gRNelIs~yI~~~tGk~RtrKQVSShiQvlk~~ 74 (82)
T 2hzd_A 5 AEGVWSPDIEQSFQEALSIYPPCGRRKIILSDEGK-MYGRNELIARYIKLRTGKTRTRKQVSSHIQVLARR 74 (82)
T ss_dssp GSCCSCHHHHHHHHHHHHHSCSSSCCCCCHHHHCC-CCCTHHHHHHHHHHHHSCCCCSHHHHHHHHHHHHH
T ss_pred cCCcCCHHHHHHHHHHHHHcCCCCccceeeccccc-ccchhHHHHHHHHHHHcccCCccchhHHHHHHHHH
Confidence 35679977667777754332111 11 111 1224578999988 579999999999998887755
No 57
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=27.59 E-value=70 Score=21.96 Aligned_cols=35 Identities=17% Similarity=0.327 Sum_probs=22.2
Q ss_pred cchhhhHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHhh
Q 043001 42 LSSYQKWKIISETCTALDVPRTANQCRRKWDSLIDEYKKII 82 (121)
Q Consensus 42 ~~~~~~W~~Ia~~m~~~G~~Rs~~QCr~KW~nL~~~Ykkik 82 (121)
.++...|.+|+..|. +..+ |-.--..|...|.+.-
T Consensus 82 V~~~~~W~~Va~~lg---~~~~---~tsa~~~Lk~~Y~k~L 116 (145)
T 2kk0_A 82 VINKKLWREITKGLN---LPTS---ITSAAFTLRTQYMKYL 116 (145)
T ss_dssp HHHHTCHHHHHHHTT---CCTT---STTHHHHHHHHHHHHS
T ss_pred hcccCcHHHHHHHhC---CCCC---cCcHHHHHHHHHHHHH
Confidence 355789999999876 6542 3333445666666643
No 58
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=27.48 E-value=1.6e+02 Score=20.72 Aligned_cols=58 Identities=10% Similarity=0.079 Sum_probs=38.3
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHhh
Q 043001 16 GPDWSSKEALILGNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLIDEYKKII 82 (121)
Q Consensus 16 ~~~Wt~~Etl~LI~~r~~~e~~~~~~~~~~~~W~~Ia~~m~~~G~~Rs~~QCr~KW~nL~~~Ykkik 82 (121)
-..||..|+..||...... ......|+.|++...=. .+|...-+.=.+.+...+.+..
T Consensus 7 ~~~~t~~E~r~fira~~kf-------G~~~~r~~~I~~da~L~--~Ks~~~v~~y~~~f~~~c~~~~ 64 (211)
T 4b4c_A 7 IKGFSDAEIRRFIKSYKKF-------GGPLERLDAIARDAELV--DKSETDLRRLGELVHNGCIKAL 64 (211)
T ss_dssp -CCSCHHHHHHHHHHHTTC-------SSGGGCHHHHHHHTTCT--TSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHH-------CCchhHHHHHHHHhccC--CCCHHHHHHHHHHHHHHHHHHH
Confidence 4579999999999874322 12256899999763211 5788777776666666665543
No 59
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=27.10 E-value=1.1e+02 Score=20.23 Aligned_cols=32 Identities=19% Similarity=0.353 Sum_probs=19.7
Q ss_pred chhhhHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHh
Q 043001 43 SSYQKWKIISETCTALDVPRTANQCRRKWDSLIDEYKKI 81 (121)
Q Consensus 43 ~~~~~W~~Ia~~m~~~G~~Rs~~QCr~KW~nL~~~Ykki 81 (121)
+....|.+|++.|. +..+ ..--..|...|.+.
T Consensus 70 ~~~~~W~~Va~~lg---~~~~----~s~~~~Lk~~Y~k~ 101 (125)
T 2cxy_A 70 NKNKKWRELATNLN---VGTS----SSAASSLKKQYIQY 101 (125)
T ss_dssp HHHTCHHHHHHHTT---SCSS----HHHHHHHHHHHHHH
T ss_pred cccCcHHHHHHHhC---CCCC----CcHHHHHHHHHHHH
Confidence 45679999999986 6543 12233455555553
No 60
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=25.44 E-value=1.3e+02 Score=19.06 Aligned_cols=32 Identities=19% Similarity=0.414 Sum_probs=20.5
Q ss_pred chhhhHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHh
Q 043001 43 SSYQKWKIISETCTALDVPRTANQCRRKWDSLIDEYKKI 81 (121)
Q Consensus 43 ~~~~~W~~Ia~~m~~~G~~Rs~~QCr~KW~nL~~~Ykki 81 (121)
++...|.+|+..|. +..+. .--..|...|.+.
T Consensus 63 ~~~~~W~~va~~lg---~~~~~----~~~~~lk~~Y~k~ 94 (107)
T 2lm1_A 63 TKDRKWAKVANRMQ---YPSSK----SVGATLKAHYERI 94 (107)
T ss_dssp HHHTTHHHHHHHTT---CCCCH----HHHHHHHHHHHHH
T ss_pred cccCcHHHHHHHhC---CCCCC----cHHHHHHHHHHHH
Confidence 45679999999985 66541 2234566666554
No 61
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=23.87 E-value=1e+02 Score=24.06 Aligned_cols=52 Identities=8% Similarity=0.031 Sum_probs=30.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHH
Q 043001 14 QVGPDWSSKEALILGNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLIDEY 78 (121)
Q Consensus 14 ~~~~~Wt~~Etl~LI~~r~~~e~~~~~~~~~~~~W~~Ia~~m~~~G~~Rs~~QCr~KW~nL~~~Y 78 (121)
.+-++|+..+-..+|.+-..+ +...|+.||..|. ..|...-+.=-+.+...|
T Consensus 108 eGF~~W~rrdf~~Fi~a~~ky---------Gr~~~~~IA~ev~----~Kt~eEV~~Y~~vFw~ry 159 (304)
T 1ofc_X 108 QGFTAWTKRDFNQFIKANEKY---------GRDDIDNIAKDVE----GKTPEEVIEYNAVFWERC 159 (304)
T ss_dssp SSCTTCCHHHHHHHHHHHHHH---------CTTCHHHHTTSST----TCCHHHHHHHHHHHHHHG
T ss_pred hhhcccCHHHHHHHHHHHHHh---------CHHHHHHHHHHhc----CCCHHHHHHHHHHHHHhH
Confidence 456789999999999874333 2345666666553 344444444333333333
No 62
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=22.97 E-value=1.5e+02 Score=19.52 Aligned_cols=33 Identities=15% Similarity=0.302 Sum_probs=20.1
Q ss_pred cchhhhHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHh
Q 043001 42 LSSYQKWKIISETCTALDVPRTANQCRRKWDSLIDEYKKI 81 (121)
Q Consensus 42 ~~~~~~W~~Ia~~m~~~G~~Rs~~QCr~KW~nL~~~Ykki 81 (121)
.++..+|..|++.|. +..+.. + =..|...|.+.
T Consensus 60 V~~~k~W~~V~~~lg---~~~~~~-~---~~~Lr~~Y~k~ 92 (122)
T 2eqy_A 60 VCKDRKWTKIATKMG---FAPGKA-V---GSHIRGHYERI 92 (122)
T ss_dssp HHHTTTHHHHHHHTT---CCSSSH-H---HHHHHHHHHHT
T ss_pred HcCCCcHHHHHHHhC---CCCCCc-H---HHHHHHHHHHH
Confidence 345679999999986 654321 1 12455556554
No 63
>1e17_A AFX; DNA binding domain, winged helix; NMR {Homo sapiens} SCOP: a.4.5.14
Probab=22.67 E-value=28 Score=24.73 Aligned_cols=86 Identities=12% Similarity=0.123 Sum_probs=43.8
Q ss_pred CCCcccCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHhhhcCCCCCHH--HHHHHHHHHHHHHHHhhh
Q 043001 6 SRTRHTRSQVGPDWSSKEALILGNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTAN--QCRRKWDSLIDEYKKIIV 83 (121)
Q Consensus 6 ~~~~~~r~~~~~~Wt~~Etl~LI~~r~~~e~~~~~~~~~~~~W~~Ia~~m~~~G~~Rs~~--QCr~KW~nL~~~Ykkikd 83 (121)
+..++..+.+...|+.--=..||.. +...--...++-.++++.|.+..- |-|+.. +...-|+|=.+.=-...+
T Consensus 27 ~~~~~~~~~~rn~kPp~SYa~LI~~--AI~sSp~k~LTL~eIY~wI~~~fP---Yfr~~~d~~s~~gWqNSIRHNLSLnk 101 (150)
T 1e17_A 27 VTGPRKGGSRRNAWGNQSYAELISQ--AIESAPEKRLTLAQIYEWMVRTVP---YFKDKGDSNSSAGWKNSIRHNLSLHS 101 (150)
T ss_dssp --------CCCCTTCSCCHHHHHHH--HHHHSSSCCEEHHHHHHHHHHHCG---GGHHHHTSTTHHHHHHHHHHHHHSST
T ss_pred CCCCccCCCCCCCCCCCCHHHHHHH--HHHhCCCCCccHHHHHHHHHHhCc---hhccCCCCccccchhhccceeeeeee
Confidence 3444455666666776555556653 111111112345788999998865 545433 345789876554333322
Q ss_pred ----------CCCCCCC-Chhhhh
Q 043001 84 ----------RSRTFPK-SQTQAH 96 (121)
Q Consensus 84 ----------~~~syw~-~~~~rk 96 (121)
|..+||. .++.-+
T Consensus 102 ~F~Kv~r~~~GKG~~W~ldp~~~~ 125 (150)
T 1e17_A 102 KFIKVHNEATGKSSWWMLNPEGGK 125 (150)
T ss_dssp TEEEECCTTTSSSCEEEECTTCC-
T ss_pred eeEecCCCCCCCcceEEECccccc
Confidence 5679998 766433
No 64
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=20.31 E-value=3.1e+02 Score=21.32 Aligned_cols=61 Identities=16% Similarity=0.224 Sum_probs=42.5
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHhhhcC---C-----CCCHHHHHHHHHHHHHHHHHh
Q 043001 15 VGPDWSSKEALILGNEIAAVEADCLKALSSYQKWKIISETCTALD---V-----PRTANQCRRKWDSLIDEYKKI 81 (121)
Q Consensus 15 ~~~~Wt~~Etl~LI~~r~~~e~~~~~~~~~~~~W~~Ia~~m~~~G---~-----~Rs~~QCr~KW~nL~~~Ykki 81 (121)
.+..||.+|...||-..-.+ +......|+.|.......- | .||+.+...+-..|++.-.+-
T Consensus 211 k~k~yteeEDRfLL~~l~k~------G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc~tLi~~iekE 279 (304)
T 1ofc_X 211 KGKNYTEIEDRFLVCMLHKL------GFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRCNTLITLIERE 279 (304)
T ss_dssp CCSSCCHHHHHHHHHHHHHH------CTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCccCHHHHHHHHHHHHHh------cCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 45579999998888653222 2233479999987766442 2 599999988888888665443
Done!