BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 043003
         (855 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q6ZRI0|OTOG_HUMAN Otogelin OS=Homo sapiens GN=OTOG PE=2 SV=3
          Length = 2925

 Score = 40.8 bits (94), Expect = 0.051,   Method: Composition-based stats.
 Identities = 27/79 (34%), Positives = 43/79 (54%), Gaps = 6/79 (7%)

Query: 767  PDTVSLESVSRKGCFVFSDVNLKAGTALKLNCQQPDDGFKQAASFVMQKGISQYHPISF- 825
            PD VSLE+  R   F+    ++ A  +L+L   Q  D F+Q ASF++ +G  Q   ++  
Sbjct: 1306 PDVVSLEAADRPNFFL----HVTANGSLELAKWQGRDTFQQHASFLLHRGTRQAGLVALE 1361

Query: 826  -LAKGSNRNYLLAPLLSFR 843
             LAK S+  Y+   +L+ R
Sbjct: 1362 SLAKPSSFLYVSGAVLALR 1380


>sp|Q8N0Z9|VSI10_HUMAN V-set and immunoglobulin domain-containing protein 10 OS=Homo
           sapiens GN=VSIG10 PE=2 SV=1
          Length = 540

 Score = 34.7 bits (78), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 3/81 (3%)

Query: 670 KSGNSSLVLMKNQSVTIEPWPAAGTGGDANATFRLIGNDQRPINFTTVKNVISKQVMFEP 729
           +SG S +V ++  S+  EP     TGG+   T ++ G    P     ++N+   +V+ +P
Sbjct: 299 ESGASCMVQIRGPSLLSEPMKTCFTGGNVTLTCQVSGA-YPPAKILWLRNLTQPEVIIQP 357

Query: 730 FDFPGKLLMQQGNNDSLVIAN 750
                 L+ Q G N +L I N
Sbjct: 358 SSR--HLITQDGQNSTLTIHN 376


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.318    0.134    0.406 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 327,948,249
Number of Sequences: 539616
Number of extensions: 14120858
Number of successful extensions: 29154
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 29145
Number of HSP's gapped (non-prelim): 12
length of query: 855
length of database: 191,569,459
effective HSP length: 126
effective length of query: 729
effective length of database: 123,577,843
effective search space: 90088247547
effective search space used: 90088247547
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 66 (30.0 bits)