Query 043003
Match_columns 855
No_of_seqs 293 out of 905
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 11:49:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043003.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043003hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF07944 DUF1680: Putative gly 100.0 2E-111 5E-116 981.1 47.8 499 109-632 1-520 (520)
2 COG3533 Uncharacterized protei 100.0 3E-112 6E-117 931.6 37.1 494 102-636 9-505 (589)
3 PF05270 AbfB: Alpha-L-arabino 99.6 5.6E-15 1.2E-19 144.2 8.1 108 724-839 2-117 (142)
4 PF05270 AbfB: Alpha-L-arabino 99.2 5.9E-11 1.3E-15 116.1 7.6 118 677-813 14-142 (142)
5 cd00249 AGE AGE domain; N-acyl 98.9 9.7E-08 2.1E-12 107.4 22.7 296 168-478 54-374 (384)
6 cd00249 AGE AGE domain; N-acyl 98.3 2.8E-05 6.1E-10 87.6 17.5 194 169-371 117-336 (384)
7 PF03663 Glyco_hydro_76: Glyco 98.2 1.1E-05 2.5E-10 91.3 13.7 191 232-436 36-253 (370)
8 PF07944 DUF1680: Putative gly 98.0 0.00014 3.1E-09 86.0 17.3 192 233-437 61-267 (520)
9 PF03663 Glyco_hydro_76: Glyco 97.9 0.00014 3E-09 82.5 15.2 184 170-372 39-256 (370)
10 COG1331 Highly conserved prote 97.9 0.0011 2.4E-08 78.8 21.7 266 153-441 199-574 (667)
11 COG3533 Uncharacterized protei 97.9 2.4E-05 5.2E-10 89.0 7.1 183 162-370 122-328 (589)
12 COG1331 Highly conserved prote 97.8 0.00027 5.9E-09 83.9 15.1 132 237-369 415-567 (667)
13 PF07470 Glyco_hydro_88: Glyco 97.6 0.002 4.3E-08 72.0 17.5 233 170-440 28-287 (336)
14 cd04791 LanC_SerThrkinase Lant 97.5 0.0042 9.1E-08 68.3 17.6 176 238-441 88-277 (321)
15 cd04791 LanC_SerThrkinase Lant 97.4 0.004 8.7E-08 68.4 15.8 185 172-372 88-276 (321)
16 PF07221 GlcNAc_2-epim: N-acyl 97.0 0.0059 1.3E-07 68.3 12.4 192 171-371 85-309 (346)
17 PF07221 GlcNAc_2-epim: N-acyl 96.9 0.015 3.3E-07 65.0 14.5 258 168-440 22-314 (346)
18 PTZ00470 glycoside hydrolase f 96.7 0.017 3.7E-07 68.3 13.0 126 171-316 113-251 (522)
19 cd04792 LanM-like LanM-like pr 96.5 0.11 2.5E-06 65.0 19.7 214 175-434 549-777 (825)
20 PF01532 Glyco_hydro_47: Glyco 96.3 0.025 5.4E-07 66.1 11.7 195 238-436 82-311 (452)
21 cd04434 LanC_like LanC-like pr 96.1 0.41 8.9E-06 52.4 19.4 225 174-440 57-301 (343)
22 cd04794 euk_LANCL eukaryotic L 96.0 0.21 4.6E-06 56.0 16.3 191 169-372 103-305 (343)
23 COG4403 LcnDR2 Lantibiotic mod 95.7 0.07 1.5E-06 65.3 11.8 119 170-315 699-821 (963)
24 COG4225 Predicted unsaturated 95.5 0.04 8.8E-07 61.0 8.1 117 239-370 42-169 (357)
25 PF06662 C5-epim_C: D-glucuron 95.4 0.14 3E-06 53.1 11.1 147 155-316 24-188 (189)
26 PF06662 C5-epim_C: D-glucuron 95.2 0.081 1.8E-06 54.8 8.6 132 293-431 36-186 (189)
27 cd04792 LanM-like LanM-like pr 95.1 0.77 1.7E-05 57.6 18.8 221 169-434 489-732 (825)
28 PF07470 Glyco_hydro_88: Glyco 94.8 0.12 2.7E-06 57.7 9.3 130 292-443 30-163 (336)
29 PF00759 Glyco_hydro_9: Glycos 94.6 0.63 1.4E-05 54.0 15.2 127 185-317 93-245 (444)
30 COG4225 Predicted unsaturated 94.4 0.23 5.1E-06 55.2 10.0 233 170-441 39-304 (357)
31 cd04434 LanC_like LanC-like pr 94.3 3.4 7.3E-05 45.3 19.2 229 175-437 10-252 (343)
32 PLN02175 endoglucanase 93.9 1.3 2.8E-05 52.3 15.5 117 238-371 174-309 (484)
33 cd04794 euk_LANCL eukaryotic L 93.9 0.79 1.7E-05 51.4 13.5 126 176-317 174-300 (343)
34 COG2942 N-acyl-D-glucosamine 2 93.9 1.2 2.5E-05 50.8 14.5 191 163-371 114-337 (388)
35 KOG2787 Lanthionine synthetase 93.8 0.52 1.1E-05 52.0 11.1 128 170-317 221-356 (403)
36 cd04793 LanC LanC is the cycla 93.7 2.2 4.8E-05 48.5 16.7 198 171-371 105-327 (382)
37 PTZ00470 glycoside hydrolase f 93.4 1.2 2.7E-05 53.0 14.4 197 176-382 231-465 (522)
38 PF06917 Pectate_lyase_2: Peri 92.8 1.4 3.1E-05 51.3 13.1 83 344-440 391-473 (557)
39 KOG2244 Highly conserved prote 92.1 4.4 9.5E-05 47.8 15.7 216 132-369 418-675 (786)
40 cd04793 LanC LanC is the cycla 90.4 3.6 7.9E-05 46.8 13.4 146 167-317 172-323 (382)
41 PLN02345 endoglucanase 90.4 45 0.00097 39.6 22.9 124 185-313 81-228 (469)
42 COG2942 N-acyl-D-glucosamine 2 89.8 23 0.0005 40.7 18.6 280 138-433 20-332 (388)
43 KOG2244 Highly conserved prote 89.1 8.3 0.00018 45.6 14.6 142 170-316 508-672 (786)
44 KOG2429 Glycosyl hydrolase, fa 88.2 2 4.3E-05 50.7 9.0 79 134-216 161-243 (622)
45 PF01532 Glyco_hydro_47: Glyco 87.8 2.3 5.1E-05 49.8 9.6 262 168-433 78-384 (452)
46 PLN02171 endoglucanase 87.5 17 0.00036 44.6 16.7 125 186-315 116-265 (629)
47 PLN02266 endoglucanase 84.7 11 0.00024 44.9 13.0 127 185-315 129-280 (510)
48 PLN02909 Endoglucanase 83.5 16 0.00036 43.3 13.7 121 184-314 118-264 (486)
49 PF05147 LANC_like: Lanthionin 82.8 1.8 3.8E-05 48.0 5.2 174 180-371 119-308 (355)
50 PLN02340 endoglucanase 81.7 17 0.00038 44.3 13.3 171 140-316 57-265 (614)
51 COG4833 Predicted glycosyl hyd 79.0 3.4 7.5E-05 44.8 5.5 189 224-432 38-240 (377)
52 PLN02420 endoglucanase 78.2 27 0.00059 41.9 13.2 168 141-316 69-277 (525)
53 PLN02613 endoglucanase 76.4 23 0.00049 42.3 11.8 121 184-315 110-257 (498)
54 PLN00119 endoglucanase 74.4 44 0.00096 39.8 13.4 125 185-315 116-265 (489)
55 KOG2430 Glycosyl hydrolase, fa 73.8 22 0.00048 39.8 10.0 143 153-317 235-389 (587)
56 PF13243 Prenyltrans_1: Prenyl 73.5 3.5 7.6E-05 37.9 3.4 79 171-268 27-105 (109)
57 COG4403 LcnDR2 Lantibiotic mod 72.0 63 0.0014 40.8 14.2 155 179-363 659-819 (963)
58 PF15095 IL33: Interleukin 33; 71.8 31 0.00067 36.6 10.0 84 697-784 157-245 (268)
59 PF05147 LANC_like: Lanthionin 71.0 14 0.00031 40.8 8.2 132 170-317 166-304 (355)
60 KOG2431 1, 2-alpha-mannosidase 66.7 8.3 0.00018 44.3 5.0 80 237-317 179-271 (546)
61 PF05592 Bac_rhamnosid: Bacter 66.4 55 0.0012 38.7 12.3 137 173-323 156-321 (509)
62 PLN03009 cellulase 66.1 35 0.00075 40.8 10.3 125 184-314 111-264 (495)
63 KOG2204 Mannosyl-oligosacchari 64.6 32 0.00068 41.1 9.2 182 181-382 344-571 (625)
64 PLN02308 endoglucanase 61.8 57 0.0012 38.9 11.0 125 186-315 112-262 (492)
65 PF06917 Pectate_lyase_2: Peri 59.9 33 0.00072 40.5 8.3 87 169-268 386-472 (557)
66 TIGR02474 pec_lyase pectate ly 58.8 69 0.0015 35.7 10.2 126 294-433 51-212 (290)
67 TIGR03463 osq_cycl 2,3-oxidosq 57.4 94 0.002 38.4 12.2 109 153-269 357-490 (634)
68 TIGR02474 pec_lyase pectate ly 56.4 73 0.0016 35.5 9.9 90 171-268 48-149 (290)
69 cd02892 SQCY_1 Squalene cyclas 53.5 87 0.0019 38.5 11.1 107 154-268 359-488 (634)
70 PF00759 Glyco_hydro_9: Glycos 49.8 88 0.0019 36.3 10.0 33 346-378 332-371 (444)
71 cd02889 SQCY Squalene cyclase 48.6 1.3E+02 0.0028 33.4 10.8 143 119-268 45-203 (348)
72 KOG2787 Lanthionine synthetase 48.6 35 0.00075 38.3 5.8 109 252-371 241-360 (403)
73 TIGR01787 squalene_cyclas squa 45.8 73 0.0016 39.2 8.8 80 184-268 382-472 (621)
74 KOG2430 Glycosyl hydrolase, fa 45.5 2.4E+02 0.0052 32.0 11.6 183 232-435 185-390 (587)
75 PF09492 Pec_lyase: Pectic aci 45.2 87 0.0019 34.9 8.4 93 170-268 42-144 (289)
76 PF09492 Pec_lyase: Pectic aci 43.4 49 0.0011 36.8 6.1 127 294-433 46-207 (289)
77 PF13249 Prenyltrans_2: Prenyl 42.5 75 0.0016 28.9 6.4 61 192-268 42-104 (113)
78 COG1339 Transcriptional regula 36.2 37 0.0008 35.6 3.5 47 556-609 145-199 (214)
79 cd00100 IL1 Interleukin-1 homo 35.7 2.2E+02 0.0049 28.5 8.8 30 768-799 103-132 (144)
80 TIGR03463 osq_cycl 2,3-oxidosq 33.4 2.8E+02 0.006 34.4 11.0 82 169-268 453-537 (634)
81 TIGR01507 hopene_cyclase squal 33.2 1.7E+02 0.0037 36.1 9.2 103 154-268 365-483 (635)
82 COG1188 Ribosome-associated he 32.0 79 0.0017 29.8 4.6 36 567-611 33-68 (100)
83 PF13243 Prenyltrans_1: Prenyl 31.7 20 0.00044 32.7 0.8 59 192-269 1-59 (109)
84 PF05726 Pirin_C: Pirin C-term 30.6 1.1E+02 0.0024 28.4 5.5 52 569-633 30-87 (104)
85 KOG2429 Glycosyl hydrolase, fa 30.3 1.4E+02 0.0029 36.1 7.2 27 407-433 374-400 (622)
86 PHA02651 IL-1 receptor antagon 30.1 53 0.0012 33.5 3.5 40 756-798 105-144 (165)
87 PLN03012 Camelliol C synthase 26.3 3.9E+02 0.0085 33.8 10.6 82 169-268 566-651 (759)
88 TIGR01507 hopene_cyclase squal 25.4 4.2E+02 0.0091 32.8 10.7 77 169-268 454-531 (635)
89 smart00125 IL1 Interleukin-1 h 24.3 5E+02 0.011 26.2 9.1 61 721-798 74-134 (147)
90 PF13464 DUF4115: Domain of un 22.8 5.1E+02 0.011 22.5 8.7 25 551-580 38-62 (77)
91 TIGR03000 plancto_dom_1 Planct 22.5 4.2E+02 0.0091 23.8 7.2 21 553-578 3-23 (75)
92 cd02889 SQCY Squalene cyclase 21.9 3.4E+02 0.0074 30.1 8.4 87 182-269 37-130 (348)
93 COG1554 ATH1 Trehalose and mal 20.8 4.3E+02 0.0094 33.4 9.4 110 151-270 345-476 (772)
No 1
>PF07944 DUF1680: Putative glycosyl hydrolase of unknown function (DUF1680); InterPro: IPR012878 The members of this family are sequences derived from hypothetical bacterial and eukaryotic proteins of unknown function. One member of this family is annotated as a possible arabinosidase, but no references were found to back this.
Probab=100.00 E-value=2.2e-111 Score=981.12 Aligned_cols=499 Identities=36% Similarity=0.630 Sum_probs=455.7
Q ss_pred CeEecCCCccHHHHHHHHhhhhccccchhhHhHHHhcCCCCCCCCCCCcc--cCCcccccchhhHHHHHHHHHHHhCCCh
Q 043003 109 DVRLLPNSMHWRAQQTNLEYLVMLDVDRLVWSFRKTAGLPTPGAPYGGWE--DQKMELRGHFLGHYLSATAMAWASTRNE 186 (855)
Q Consensus 109 ~VrL~~~~~~~~~~~~~~~yll~ld~drLL~nFR~~AGl~~~g~~~gGWe--~~dsdlrGH~~Gh~LsA~A~~~a~t~D~ 186 (855)
+|+|+ ++||+++|+++++|++++++|||+++||..|||+.++.++|||| ++++.++||++||||||+|++|+.++|+
T Consensus 1 ~V~l~-~~~~~~~~~~~~~~~l~~~~d~ll~~~r~~agl~~~~~~~g~we~~~~~~~~~~~~~g~wl~a~a~~~~~~~D~ 79 (520)
T PF07944_consen 1 DVRLT-DGFWKRRQELNRAYLLPLDPDRLLYNFRSHAGLPNFAIAYGGWEGEFPGWWFRGHDVGKWLEAAAYAYAYTGDP 79 (520)
T ss_pred CeEEC-cHHHHHHHHHHHHHHHHhHHHHHhhhcCcccCCCCccccCCCCccCCCCCccCCCcHHHHHHHHHHHHHHCCCH
Confidence 79999 58999999999999999999999999999999999888999999 8899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCcccccCCchhhhhhhcccccccc----chhhHHHHHHHHHHHHHhCChhHHHHHHHHH
Q 043003 187 TVKQKMDAVMSVLSECQKKIGTGYLSAFPSEFFDRLENLVYVWAP----YYTIHKIMAGLLDQYTLANNGQALNITIWMA 262 (855)
Q Consensus 187 ~L~~k~d~~Vd~L~~~Q~~~~DGYL~a~~~~~~~r~~~l~~~w~p----yy~~HkI~aGLld~Y~~TG~~kaL~ia~r~A 262 (855)
+|++|++++|+.|.+||+ +||||+++++.. ..+.+..|+| +|+.|||+.||+|+|++||++++|++|+|+|
T Consensus 80 ~l~~~~d~~V~~l~~~Q~--~dGYl~~~~~~~---~~~~~~~w~~~~he~Y~~~~ll~gl~~~y~~tG~~~~L~v~~k~a 154 (520)
T PF07944_consen 80 ELKAKADEIVDELAAAQQ--PDGYLGTYPEER---NFNPDDRWAPDMHELYCLGKLLEGLIDYYEATGNERALDVATKLA 154 (520)
T ss_pred HHHHHHHHHHHHHHHhcc--CCceeccccccc---ccccccCCCCCccceehHhHHHHHHHHHHHHHCcHHHHHHHHHHH
Confidence 999999999999999999 999999998653 1134567777 8899999999999999999999999999999
Q ss_pred HHHHHHhhhhhhccchhhhcccccccccchHHHHHHHHHhcCCHHHHHHHHhccccccccc--cccccCCCCCCcccCcc
Q 043003 263 DYFNTRVQNLIARSSLERHYQTLNDESGGMNDVLYKLYGITKDPKHLKLAELFDKPCFLGL--LAVKADNIAGLHANTHI 340 (855)
Q Consensus 263 D~~~~r~~~~~~~~~~~~~~~~l~~E~GGmneaL~~LY~~TGd~ryL~LA~~F~~~~~~~~--la~~~d~l~g~Hanthi 340 (855)
||+.++... +..+.....+.+|+|||+++|++||++|||++||+||++|++..++++ +..+.|.+.+.|+|+++
T Consensus 155 d~~~~~~~~----~~~~~~~~~~~~~~~~i~~~l~~LY~~Tgd~~yL~lA~~f~~~~~~~~~~~~~~~d~~~~~~a~~~~ 230 (520)
T PF07944_consen 155 DWVYRRLSR----LGPEPGQKMGYPEHGGINEALVRLYEITGDERYLDLAEYFVDQRGFDPYDLAYGQDHLPGRHANTHI 230 (520)
T ss_pred HHHHHHhcc----CCHHHhhcccccccchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCCchhhcCccCCCcccccee
Confidence 999665543 222333445567899999999999999999999999999999988888 88889999999999999
Q ss_pred hHhH-------HHHHHHHHhCChHHHHHHHHHHHHhcccCeEeecCCCCC---CCCCCCccccccCCcCccccchhhHHH
Q 043003 341 PLVC-------GVQNRYELTGDEQSMAMGTFFMDIINSSHSYATGGTSHQ---EFWTDPKRIATALSAETEESCTTYNML 410 (855)
Q Consensus 341 P~~~-------G~a~~Y~~TGD~~y~~aa~~fwd~V~~~~~Y~TGG~g~~---E~f~~~~~l~~~l~~~~~ETCat~nml 410 (855)
|.++ |++++|++|||++|++++++||++|+++|||+|||+|++ |+|++++++|+ ...++|||++||||
T Consensus 231 ~h~vr~~y~~~g~a~~y~~tgd~~~~~a~~~~w~~v~~~~~y~tGg~g~~~~~E~f~~~~~lp~--~~~~~EtCas~~~~ 308 (520)
T PF07944_consen 231 GHAVRAMYLYSGAADLYEETGDEEYLDAAENFWDNVVRHHMYATGGIGSDHEGEHFGPPYDLPN--RLAYAETCASVNMM 308 (520)
T ss_pred eEEEEhhhhhhHHHHHHHHhCCHHHHHHHHHHHHHHHhcCeeccCCCcCCCCCccCCCCCCCCc--CCCCccccHHHHHH
Confidence 9998 999999999999999999999999999999999999998 99999999998 45679999999999
Q ss_pred HHHHHHHccCCcchHHHHHHHHHhhhhcccCCCCCCCeEEEecCCCCCCCCCccCCCCCCCCCCcccCCCCccchhhhcc
Q 043003 411 KVSRYLFKWTKQVTYADYYERALTNGVLGIQRGTEPGVMIYMLPLSPGSSKAKSYHGWGDAFDSFWCCYGTGIESFAKLG 490 (855)
Q Consensus 411 kl~~~Lf~~tgd~~YaD~~ERaLyN~iLa~q~~~d~g~~~Y~~PL~~g~~k~~~~~~~g~p~~~f~CC~gtg~e~~akl~ 490 (855)
+|+++||++|||++|+|+|||++||++||+|++ |+++++|+|||+++..|... ..+.+++++||||+||++|+++||+
T Consensus 309 ~~~~~L~~~tgd~~yaD~~Er~lyN~~la~~~~-d~~~~~Y~~pl~~~~~~~~~-~~~~~~~~~~~CC~~n~~r~~~~~~ 386 (520)
T PF07944_consen 309 KLARRLFRLTGDARYADYYERALYNALLAGQSP-DGGSFFYFNPLNSGPYKHRW-KNYRTPWFSFWCCPGNGARGWAKLP 386 (520)
T ss_pred HHHHHHHhcCCCchHHHHHHHHHhcccccccCC-CCCeeEEecCCccCcCcccc-ccccCCCCCCCCCcchHHHHHHHHh
Confidence 999999999999999999999999999999987 99999999999988755321 2466788899999999999999999
Q ss_pred cceeEeecCCCCcEEEEEeeceEEEeeecc--EEEEEEeCCCCCCCCCeeEEEEEEeCCCCCeeeEEEEeecCCcCCCCc
Q 043003 491 DSIYFEQEGKGPGVYIIQYISSTFDWKAGQ--IVIHQNVDPVVSWDQNLRMALTFTSNKGPGVSSVLNLRIPFWANPNGG 568 (855)
Q Consensus 491 ~~iY~~~~~~~~~LyVnLYipS~l~~~~~g--v~i~q~T~~pyp~~~~~~V~ltV~~~~~~~~~ftL~LRIP~Wa~~~~~ 568 (855)
++||++++ ++||||||+||+++|+.++ |+|+|+|+|| |++ +|+|+|++. ++.+|+|+||||+||+ ++
T Consensus 387 ~~iy~~~~---~~l~v~ly~~s~~~~~~~~~~v~i~q~T~yP--~~~--~v~i~v~~~--~~~~f~l~lRIP~Wa~--~~ 455 (520)
T PF07944_consen 387 DYIYFRDD---DGLYVNLYIPSELTWPVGGGTVTITQETDYP--FEG--TVRITVSPD--KPVPFTLRLRIPSWAK--GA 455 (520)
T ss_pred hhheEecC---CEEEEEEEcceEEEEEECCcEEEEEEecCCC--CCC--CEEEEEEcC--CCccEEEEEEccCCCC--Cc
Confidence 99999985 6999999999999999887 9999999955 777 899999874 4788999999999998 79
Q ss_pred eEEECCcc-ccCCCCCCeEEEEeecCCCCEEEEEecceeEEEecCCCcccccCeEEEeecceeEE
Q 043003 569 KATLNKDN-LQIPSPGNFLSVTRAWSPDEKLFIQLPINLRTEAIKDDRPQYASLQAIFYGPYLLA 632 (855)
Q Consensus 569 ~i~VNG~~-~~~~~~ggY~~I~R~Wk~GD~V~L~LPm~lr~~~~~d~~~~~~~~vAv~rGPlVla 632 (855)
+|+|||++ .....++||++|+|+|++||+|+|+|||++|++++++.+++..+++||+|||||||
T Consensus 456 ~i~vNG~~~~~~~~~~gy~~i~r~W~~gD~v~l~lpm~~r~~~~~~~~~~~~~~vAv~rGPlV~a 520 (520)
T PF07944_consen 456 TIRVNGEPVVDTAVPGGYLTIEREWKDGDVVELRLPMEVRLEPANPRVPDDPGRVAVMRGPLVYA 520 (520)
T ss_pred EEEECCEeCCCCcCCCCeEEEEeeccCCcEEEEEecCeeEEEeCCCCCccCCCeEEEEeCchhcC
Confidence 99999999 55567999999999999999999999999999999666666688999999999998
No 2
>COG3533 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=100.00 E-value=3e-112 Score=931.61 Aligned_cols=494 Identities=28% Similarity=0.423 Sum_probs=448.2
Q ss_pred cccccCCCeEecCCCccHHHHHHHHhhhhccccchhhHhHHHhcCCCCCCCCCCCcccCCcccccchhhHHHHHHHHHHH
Q 043003 102 LKEVSLHDVRLLPNSMHWRAQQTNLEYLVMLDVDRLVWSFRKTAGLPTPGAPYGGWEDQKMELRGHFLGHYLSATAMAWA 181 (855)
Q Consensus 102 ~~p~~l~~VrL~~~~~~~~~~~~~~~yll~ld~drLL~nFR~~AGl~~~g~~~gGWe~~dsdlrGH~~Gh~LsA~A~~~a 181 (855)
++|+++++|.+ ...|..+.++++++++|+|+++|-.+++|+.+...++||+.+ .+.||-+||||||+|++++
T Consensus 9 ~r~v~v~~~~~------~~~qg~~~d~v~~~~~d~Lldr~~ea~~l~~~d~~r~g~~~q--~f~dsdlgkwlea~A~~l~ 80 (589)
T COG3533 9 LRPVTVKDVIF------GQFQGKNRDVVVSLQADRLLDRCHEAAMLPAKDPFRGGWETQ--MFWDSDLGKWLEAAAYSLA 80 (589)
T ss_pred cccCCcCchhc------cccccccceeEEecCHHHHHhHhhhccCCCccCcccccceee--eeccccHHHHHHHHHHHHh
Confidence 66777777766 345578889999999999999999999999888889999854 3777888999999999999
Q ss_pred hCCChHHHHHHHHHHHHHHHHHhhCCCcccccCCc--hhhhhhhccccccccchhhHHHHHHHHHHHHHhCChhHHHHHH
Q 043003 182 STRNETVKQKMDAVMSVLSECQKKIGTGYLSAFPS--EFFDRLENLVYVWAPYYTIHKIMAGLLDQYTLANNGQALNITI 259 (855)
Q Consensus 182 ~t~D~~L~~k~d~~Vd~L~~~Q~~~~DGYL~a~~~--~~~~r~~~l~~~w~pyy~~HkI~aGLld~Y~~TG~~kaL~ia~ 259 (855)
.++|++|.+++|++|++++++|+ +|||||++.+ ....||.++++.|+.||.+|+|+++ +|+|++||+.++|+|++
T Consensus 81 ~~~dp~Lekr~D~vi~~~a~~Qd--edGYl~~~~q~~~pe~Rw~nlr~~HelY~aghLieg~-va~~qaTGkr~lldV~~ 157 (589)
T COG3533 81 NKGDPELEKRIDEVVEELARAQD--EDGYLGGWFQADFPEERWGNLRPNHELYCAGHLIEGG-VAAHQATGKRRLLDVVC 157 (589)
T ss_pred cCCCHHHHHHHHHHHHHHHHhhc--cCCcccceeeccCchhhhhccccchHHHHhHHHHhhh-hHHHHhhCcchHHHHHH
Confidence 99999999999999999999999 9999999975 3578999999999999999998765 59999999999999999
Q ss_pred HHHHHHHHHhhhhhhccchhhhcccccccccchHHHHHHHHHhcCCHHHHHHHHhccccccccccccccCCCCCCcccCc
Q 043003 260 WMADYFNTRVQNLIARSSLERHYQTLNDESGGMNDVLYKLYGITKDPKHLKLAELFDKPCFLGLLAVKADNIAGLHANTH 339 (855)
Q Consensus 260 r~AD~~~~r~~~~~~~~~~~~~~~~l~~E~GGmneaL~~LY~~TGd~ryL~LA~~F~~~~~~~~la~~~d~l~g~Hanth 339 (855)
|+|||+.+.|++. .+ +..+.|++++|+++|++||++|||+|||+||++|.+.+..+|++.+.+.+.+.||+++
T Consensus 158 rlADhi~tvfgp~----~~---q~~g~~gH~eielAl~~Ly~~Tg~~rYL~LA~~Fi~~rg~~P~~~rg~e~~~gHAvr~ 230 (589)
T COG3533 158 RLADHIATVFGPE----ED---QVPGYCGHPEIELALAELYRLTGDQRYLDLARRFIHQRGVEPLAQRGDELEGGHAVRQ 230 (589)
T ss_pred HHHHhhhhhcCcc----cc---ccccccCCCchhHHHHHHHHHhcChHHHHHHHHHHHHhccChhhcCchhhhhhhHHHH
Confidence 9999999998763 22 3345567777999999999999999999999999999998999888888999999999
Q ss_pred chHhHHHHHHHHHhCChHHHHHHHHHHHHhcccCeEeecCCC-CCCCCCCCccccccCCcCccccchhhHHHHHHHHHHc
Q 043003 340 IPLVCGVQNRYELTGDEQSMAMGTFFMDIINSSHSYATGGTS-HQEFWTDPKRIATALSAETEESCTTYNMLKVSRYLFK 418 (855)
Q Consensus 340 iP~~~G~a~~Y~~TGD~~y~~aa~~fwd~V~~~~~Y~TGG~g-~~E~f~~~~~l~~~l~~~~~ETCat~nmlkl~~~Lf~ 418 (855)
||+.+|+|++|+++||+.++.++++||++|+++|+|||||+| ++|+|+++|+||+ .+.|+|||||||||||++||+.
T Consensus 231 iyl~~G~A~l~~~~gDds~r~~~~~lW~~~t~k~~YitGG~g~~~E~F~~~ydlpn--~~~yAEtCas~~l~~~a~Rml~ 308 (589)
T COG3533 231 IYLYIGAADLAEETGDDSLRQAAEFLWQNVTTRQSYITGGNGSSNEHFGPDYDLPN--RTAYAETCASYNLLKLARRMLG 308 (589)
T ss_pred HHHhhhHHHHHHHhCCHHHHHHHHHHHHHhhhhheEEecccCCccccCCccccCcc--cchHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999996 4699999999999 6799999999999999999999
Q ss_pred cCCcchHHHHHHHHHhhhhcccCCCCCCCeEEEecCCCCCCCCCccCCCCCCCCCCcccCCCCccchhhhcccceeEeec
Q 043003 419 WTKQVTYADYYERALTNGVLGIQRGTEPGVMIYMLPLSPGSSKAKSYHGWGDAFDSFWCCYGTGIESFAKLGDSIYFEQE 498 (855)
Q Consensus 419 ~tgd~~YaD~~ERaLyN~iLa~q~~~d~g~~~Y~~PL~~g~~k~~~~~~~g~p~~~f~CC~gtg~e~~akl~~~iY~~~~ 498 (855)
+++|++|||+|||+|||++|++|++ |+++|||+|||+.+... ...++++||||.||++|+++|+++|||...+
T Consensus 309 ~~~d~~yaDvmErALYN~iL~g~sl-Dg~~ffY~nPle~~grh------~r~~w~~c~CCppn~ar~~as~g~yiY~~~~ 381 (589)
T COG3533 309 WGPDSQYADVMERALYNHILAGQSL-DGGMFFYFNPLESGGRH------SRQKWFSCWCCPPNGARSVASIGDYIYTRAD 381 (589)
T ss_pred cCCCchHHHHHHHHHHhccccccCC-CCCeeEEecchhhCCCc------cccccccCCCCCCcHhhhhhhccceEEccCC
Confidence 9999999999999999999999976 99999999999866521 2456788999999999999999999999976
Q ss_pred CCCCcEEEEEeeceEEEeeeccEEEEEEeCCCCCCCCCeeEEEEEEeCCCCCeeeEEEEeecCCcCCCCceEEECCcccc
Q 043003 499 GKGPGVYIIQYISSTFDWKAGQIVIHQNVDPVVSWDQNLRMALTFTSNKGPGVSSVLNLRIPFWANPNGGKATLNKDNLQ 578 (855)
Q Consensus 499 ~~~~~LyVnLYipS~l~~~~~gv~i~q~T~~pyp~~~~~~V~ltV~~~~~~~~~ftL~LRIP~Wa~~~~~~i~VNG~~~~ 578 (855)
++||||||+.|+++.+..+|.|+|+|+ |||++ +|+|||+.. .+.+|+|+||||+||. .++++|||+.+.
T Consensus 382 ---d~lyvnLy~~S~~~l~~~~v~irqet~--yPw~g--~v~ltv~~~--~p~~~tlaLRlP~W~a--~~tl~vNG~~~~ 450 (589)
T COG3533 382 ---DALYVNLYIASTADLPGDDVQIRQETN--YPWSG--QVKLTVERA--QPVLFTLALRLPAWCA--APTLRVNGKEVI 450 (589)
T ss_pred ---CEEEEEEeecccccccccceEEEeccC--CCCcC--eeEEEEecC--CCceEEEEEecccccC--CcEEEEcCcchh
Confidence 589999999999999988899999999 55888 999999975 5889999999999998 799999998777
Q ss_pred CCCCCCeEEEEeecCCCCEEEEEecceeEEEecCCCcccccCeEEEeecceeEEeecC
Q 043003 579 IPSPGNFLSVTRAWSPDEKLFIQLPINLRTEAIKDDRPQYASLQAIFYGPYLLAGYSQ 636 (855)
Q Consensus 579 ~~~~ggY~~I~R~Wk~GD~V~L~LPm~lr~~~~~d~~~~~~~~vAv~rGPlVla~~~~ 636 (855)
....+||++|+|.|++||+|+|.|||++|++..|+++... + ||+|||||||++..
T Consensus 451 ~~~~~GYa~i~R~Wq~GDrV~L~LpM~vr~y~nP~~r~~~-G--Ai~rGPlVyc~e~~ 505 (589)
T COG3533 451 QTRGKGYARISREWQAGDRVELMLPMPVRIYANPDVRHDV-G--AIMRGPLVYCAEAG 505 (589)
T ss_pred hccCCCeeeeeehhcCCCeEEEeecceeEeecCCcchhhh-h--hhhcCCeEEEEecC
Confidence 6678899999999999999999999999988888886442 2 99999999999865
No 3
>PF05270 AbfB: Alpha-L-arabinofuranosidase B (ABFB); InterPro: IPR007934 This family consists of several fungal alpha-L-arabinofuranosidase B proteins. L-Arabinose is a constituent of plant cell wall polysaccharides. It is found in a polymeric form in L-arabinan, in which the backbone is formed by 1,5-a- linked l-arabinose residues that can be branched via 1,2-a- and 1,3-a-linked l-arabinofuranose side chains. AbfB hydrolyses 1,5-a, 1,3-a and 1,2-a linkages in both oligosaccharides and polysaccharides, which contain terminal non-reducing l-arabinofuranoses in side chains [].; GO: 0046556 alpha-N-arabinofuranosidase activity, 0046373 L-arabinose metabolic process; PDB: 3AKI_A 3AKF_A 3AKH_A 3AKG_A 2D44_A 1WD3_A 2D43_A 1WD4_A 3KMV_E.
Probab=99.56 E-value=5.6e-15 Score=144.16 Aligned_cols=108 Identities=19% Similarity=0.325 Sum_probs=85.7
Q ss_pred ceecCCCCCCCcceecccCCcceEEe---cCC-----CCceEEEeecCCCCCCeEEEeecCCCCeEEEeccccCCCceEE
Q 043003 724 QVMFEPFDFPGKLLMQQGNNDSLVIA---NNP-----GNSVFQVNAGLDGKPDTVSLESVSRKGCFVFSDVNLKAGTALK 795 (855)
Q Consensus 724 ~v~lepfd~Pg~~v~~~~~~~~l~v~---~~~-----~~s~f~~vpgl~g~~~~vsles~~~pg~~~~~~~~~~~g~~~~ 795 (855)
.++++.++.|+.+|+|+ +..++++ .++ .|++|+|||||.+ +++|||||+++||.|||+ .+..|+
T Consensus 2 ~~~~~s~~~~~ryirh~--~~~~~~~~v~~~s~~~~r~da~f~vvpGLa~-~~~vSfES~~~PG~yLrh-----~~~~v~ 73 (142)
T PF05270_consen 2 SLRLTSPNYPDRYIRHR--GSLVRLDPVSSSSSALDRADATFRVVPGLAD-SSCVSFESVNYPGYYLRH-----SNFRVR 73 (142)
T ss_dssp EEEEEESSSTTEEEEEE--TTEEEEEES-SSGGHHHHHGG-EEEEE-SS--TTCEEEEESSSTTEEEEE-----ETTEEE
T ss_pred eEEEECCCCCCeEEEEc--CceEEEeeccCCcchhhccCceEEEEEccCC-CCEEEEEECCCCCcEEEE-----ECCEEE
Confidence 46889999999999995 4555553 223 3899999999988 689999999999999998 377999
Q ss_pred EeecCCCcccccccceecccCccccCcceEEEecCCCceecccc
Q 043003 796 LNCQQPDDGFKQAASFVMQKGISQYHPISFLAKGSNRNYLLAPL 839 (855)
Q Consensus 796 ~~~~~~~~~f~~~asf~~~~gl~~~~~~sf~a~g~~~~~l~~pl 839 (855)
|+..++++.|+++|+|...+||+...-+||+...-+..||.+=-
T Consensus 74 l~~~d~s~~F~~dATF~~~~Gl~~~g~~sfeS~n~Pg~ylrh~~ 117 (142)
T PF05270_consen 74 LEKNDGSALFREDATFCPRPGLAGPGYVSFESYNYPGRYLRHYN 117 (142)
T ss_dssp EEE--SSHHHHHHT-EEEEE-SSSTTEEEEEESSSTTEEEEEET
T ss_pred EeecCCCccccCCceEEEecCCCCCCcceEEEecCCCeEEEEEC
Confidence 99888889999999999999999955579999999999997543
No 4
>PF05270 AbfB: Alpha-L-arabinofuranosidase B (ABFB); InterPro: IPR007934 This family consists of several fungal alpha-L-arabinofuranosidase B proteins. L-Arabinose is a constituent of plant cell wall polysaccharides. It is found in a polymeric form in L-arabinan, in which the backbone is formed by 1,5-a- linked l-arabinose residues that can be branched via 1,2-a- and 1,3-a-linked l-arabinofuranose side chains. AbfB hydrolyses 1,5-a, 1,3-a and 1,2-a linkages in both oligosaccharides and polysaccharides, which contain terminal non-reducing l-arabinofuranoses in side chains [].; GO: 0046556 alpha-N-arabinofuranosidase activity, 0046373 L-arabinose metabolic process; PDB: 3AKI_A 3AKF_A 3AKH_A 3AKG_A 2D44_A 1WD3_A 2D43_A 1WD4_A 3KMV_E.
Probab=99.16 E-value=5.9e-11 Score=116.13 Aligned_cols=118 Identities=26% Similarity=0.408 Sum_probs=83.8
Q ss_pred EEe-eCCceEEeecCC-CCCCCcceEEEEEEcCCCCCcccccccccCCcceecCCCCCCCcceecccCCcceEEecC--C
Q 043003 677 VLM-KNQSVTIEPWPA-AGTGGDANATFRLIGNDQRPINFTTVKNVISKQVMFEPFDFPGKLLMQQGNNDSLVIANN--P 752 (855)
Q Consensus 677 ~~~-~~~~~~~~~~~~-~g~~~~~~~~fr~~~~~~~~~~~~~p~~~~g~~v~lepfd~Pg~~v~~~~~~~~l~v~~~--~ 752 (855)
++. .++.+.+..... .+.-..-.++||++++-.++ ..|++|+-|.||.||+| .++.|+++.+ +
T Consensus 14 yirh~~~~~~~~~v~~~s~~~~r~da~f~vvpGLa~~-----------~~vSfES~~~PG~yLrh--~~~~v~l~~~d~s 80 (142)
T PF05270_consen 14 YIRHRGSLVRLDPVSSSSSALDRADATFRVVPGLADS-----------SCVSFESVNYPGYYLRH--SNFRVRLEKNDGS 80 (142)
T ss_dssp EEEEETTEEEEEES-SSGGHHHHHGG-EEEEE-SS-T-----------TCEEEEESSSTTEEEEE--ETTEEEEEE--SS
T ss_pred EEEEcCceEEEeeccCCcchhhccCceEEEEEccCCC-----------CEEEEEECCCCCcEEEE--ECCEEEEeecCCC
Confidence 344 545555554321 22223557999998653333 47999999999999999 7888888543 2
Q ss_pred ----CCceEEEeecCCCCCCeEEEeecCCCCeEEEeccccCCCceEEEeecC---CCcccccccceec
Q 043003 753 ----GNSVFQVNAGLDGKPDTVSLESVSRKGCFVFSDVNLKAGTALKLNCQQ---PDDGFKQAASFVM 813 (855)
Q Consensus 753 ----~~s~f~~vpgl~g~~~~vsles~~~pg~~~~~~~~~~~g~~~~~~~~~---~~~~f~~~asf~~ 813 (855)
.|..|..+|||.+ +|.|||||.+.||+|||+ .+..|+|...+ ..+.|+++++|..
T Consensus 81 ~~F~~dATF~~~~Gl~~-~g~~sfeS~n~Pg~ylrh-----~~~~l~l~~~~g~d~~~~f~~datf~v 142 (142)
T PF05270_consen 81 ALFREDATFCPRPGLAG-PGYVSFESYNYPGRYLRH-----YNGELYLAPIGGYDNTDSFRADATFRV 142 (142)
T ss_dssp HHHHHHT-EEEEE-SSS-TTEEEEEESSSTTEEEEE-----ETTEEEEEESSSGG-SHHHHHHT-EEE
T ss_pred ccccCCceEEEecCCCC-CCcceEEEecCCCeEEEE-----ECCEEEEecCCCcCcchhhccccEEeC
Confidence 7889999999999 799999999999999998 27789999843 4677999999863
No 5
>cd00249 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase domain; Responsible for intermediate epimerization during biosynthesis of N-acetylneuraminic acid. Catalytic mechanism is believed to be via nucleotide elimination and readdition and is ATP modulated. AGE is structurally and mechanistically distinct from the other four types of epimerases. The AGE domain monomer is composed of an alpha(6)/alpha(6)-barrel, the structure of which is also found in glucoamylase and cellulase. The active form is a homodimer. The alignment also contains subtype III mannose 6-phosphate isomerases.
Probab=98.93 E-value=9.7e-08 Score=107.42 Aligned_cols=296 Identities=11% Similarity=0.043 Sum_probs=172.5
Q ss_pred hhhHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhCC-CcccccCCchhhhhhhccccccccchhhHHHHHHHHHHH
Q 043003 168 FLGHYLSATAMAWASTRNETVKQKMDAVMSVLSECQKKIG-TGYLSAFPSEFFDRLENLVYVWAPYYTIHKIMAGLLDQY 246 (855)
Q Consensus 168 ~~Gh~LsA~A~~~a~t~D~~L~~k~d~~Vd~L~~~Q~~~~-DGYL~a~~~~~~~r~~~l~~~w~pyy~~HkI~aGLld~Y 246 (855)
..+.-|-++|.++..++|++.++.++..++.|.+.-..-. .||+..+..+. +.....--.|=-.|.| .|+..+|
T Consensus 54 ~~ar~i~~~a~a~~~~~~~~~l~~A~~~~~fl~~~~~d~~~Gg~~~~~~~~g----~~~~~~~~l~~~a~~l-~ala~~~ 128 (384)
T cd00249 54 LQARQVYCFAVAYLLGWRPEWLEAAEHGLEYLDRHGRDPDHGGWYFALDQDG----RPVDATKDLYSHAFAL-LAAAQAA 128 (384)
T ss_pred EecHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhCcCCCCCCEEEEEcCCC----CCcccccchHHHHHHH-HHHHHHH
Confidence 3588999999999999999999999999999988533112 47877664211 0000000122234444 4588999
Q ss_pred HHhCChhHHHHHHHHHHHHHHHhhhhhhccc--hhhhccccc--ccccchHHHHHHHHHhcCCHHHHHHHHhccc---cc
Q 043003 247 TLANNGQALNITIWMADYFNTRVQNLIARSS--LERHYQTLN--DESGGMNDVLYKLYGITKDPKHLKLAELFDK---PC 319 (855)
Q Consensus 247 ~~TG~~kaL~ia~r~AD~~~~r~~~~~~~~~--~~~~~~~l~--~E~GGmneaL~~LY~~TGd~ryL~LA~~F~~---~~ 319 (855)
++||++++|+.|++.++++.+++-+.-.++- ....+.... ..+.=+.++|.+||++|||++|++.|+.+.+ +.
T Consensus 129 ~at~d~~~l~~A~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~h~~~all~l~~~tgd~~~~~~A~~l~~~~~~~ 208 (384)
T cd00249 129 KVGGDPEARALAEETIDLLERRFWEDHPGAFDEADPGTPPYRGSNPHMHLLEAMLAAYEATGEQKYLDRADEIADLILDR 208 (384)
T ss_pred HhcCCHHHHHHHHHHHHHHHHHhccCCCcccCCCCCCCCCCCCCChhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998731000000 000011111 1111125789999999999999999976532 11
Q ss_pred ccccc----ccc-cCC---C---CCCcccC--cchHhHHHHHHHHHhCChHHHHHHHHHHHHhcccCe-EeecCCCCCCC
Q 043003 320 FLGLL----AVK-ADN---I---AGLHANT--HIPLVCGVQNRYELTGDEQSMAMGTFFMDIINSSHS-YATGGTSHQEF 385 (855)
Q Consensus 320 ~~~~l----a~~-~d~---l---~g~Hant--hiP~~~G~a~~Y~~TGD~~y~~aa~~fwd~V~~~~~-Y~TGG~g~~E~ 385 (855)
+.++. ... .+. + .+...+- +.-.+..+.++++++||+.|++.++.+|+.+.++-. --+||.-. .
T Consensus 209 ~~~~~~G~~~e~~~~~~~~~~~~~~~~~~Pgh~~e~a~~ll~l~~~~~~~~~~~~a~~~~~~~~~~~~d~~~G~~~~--~ 286 (384)
T cd00249 209 FIDAESGVVREHFDEDWNPYNGDKGRHQEPGHQFEWAWLLLRIASRSGQAWLIEKARRLFDLALALGWDPERGGLYY--S 286 (384)
T ss_pred hcCcccCeEEEEECCCCCCCcCcCCCcCCCchHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhCcCccCCCEEE--e
Confidence 22110 000 010 0 0111110 111234566789999999999999999998774321 11232211 0
Q ss_pred CCCCccccccCCcCccccchhhHHHHHHHHHHccCCcchHHHHHHHH---HhhhhcccCCCCCCCeEEEecCCCCCCCCC
Q 043003 386 WTDPKRIATALSAETEESCTTYNMLKVSRYLFKWTKQVTYADYYERA---LTNGVLGIQRGTEPGVMIYMLPLSPGSSKA 462 (855)
Q Consensus 386 f~~~~~l~~~l~~~~~ETCat~nmlkl~~~Lf~~tgd~~YaD~~ERa---LyN~iLa~q~~~d~g~~~Y~~PL~~g~~k~ 462 (855)
+.++...+ ...+.-.....++++....|++++||.+|.+.++++ +++..+... .++-+.+..+-+.-....
T Consensus 287 ~~~~~~~~---~~~~~~~w~~~E~~~a~~~l~~~tgd~~~~~~~~~~~~~~~~~~~d~~---~G~w~~~~~~~g~~~~~~ 360 (384)
T cd00249 287 FLDDGGLL---EDDDKRWWPQTEALKAALALAGITGDERYWQWYQRAWAYLWRHFIDPE---YGLWFGYLDADGKVLLTP 360 (384)
T ss_pred eECCCCCc---ccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCC---CCcceeeECCCCCCcCCC
Confidence 11111111 123444556778888888899999999999999887 444444333 334455655543211111
Q ss_pred ccCCCCCCCCCCcccC
Q 043003 463 KSYHGWGDAFDSFWCC 478 (855)
Q Consensus 463 ~~~~~~g~p~~~f~CC 478 (855)
...|.+.++.+-||
T Consensus 361 --~~~~~~~yH~~~a~ 374 (384)
T cd00249 361 --KGPAKTFYHVVRAL 374 (384)
T ss_pred --CCCCCCCccHHhHH
Confidence 03455666666555
No 6
>cd00249 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase domain; Responsible for intermediate epimerization during biosynthesis of N-acetylneuraminic acid. Catalytic mechanism is believed to be via nucleotide elimination and readdition and is ATP modulated. AGE is structurally and mechanistically distinct from the other four types of epimerases. The AGE domain monomer is composed of an alpha(6)/alpha(6)-barrel, the structure of which is also found in glucoamylase and cellulase. The active form is a homodimer. The alignment also contains subtype III mannose 6-phosphate isomerases.
Probab=98.25 E-value=2.8e-05 Score=87.61 Aligned_cols=194 Identities=11% Similarity=0.006 Sum_probs=122.0
Q ss_pred hhHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhCCC-cccccCCchhhhhhhccccccccchhhHHHHHHHHHHHH
Q 043003 169 LGHYLSATAMAWASTRNETVKQKMDAVMSVLSECQKKIGT-GYLSAFPSEFFDRLENLVYVWAPYYTIHKIMAGLLDQYT 247 (855)
Q Consensus 169 ~Gh~LsA~A~~~a~t~D~~L~~k~d~~Vd~L~~~Q~~~~D-GYL~a~~~~~~~r~~~l~~~w~pyy~~HkI~aGLld~Y~ 247 (855)
-.+.|.|++.+|..++|++.++.+.++++.|.+..- ..+ ||...+... +..... ..-.+|++++ |+..++
T Consensus 117 ~a~~l~ala~~~~at~d~~~l~~A~~~~~~l~~~~~-~~~g~~~~~~~~~----~~~~~~---~~~~~h~~~a-ll~l~~ 187 (384)
T cd00249 117 HAFALLAAAQAAKVGGDPEARALAEETIDLLERRFW-EDHPGAFDEADPG----TPPYRG---SNPHMHLLEA-MLAAYE 187 (384)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhc-cCCCcccCCCCCC----CCCCCC---CChhHHHHHH-HHHHHH
Confidence 378899999999999999999999999999988774 133 343222111 111111 2334677875 789999
Q ss_pred HhCChhHHHHHHHHHHHHHHHhhhhhhc-cc--hhhhcccc------cccccc---hHHHHHHHHHhcCCHHHHHHHHhc
Q 043003 248 LANNGQALNITIWMADYFNTRVQNLIAR-SS--LERHYQTL------NDESGG---MNDVLYKLYGITKDPKHLKLAELF 315 (855)
Q Consensus 248 ~TG~~kaL~ia~r~AD~~~~r~~~~~~~-~~--~~~~~~~l------~~E~GG---mneaL~~LY~~TGd~ryL~LA~~F 315 (855)
+||+++.++.|.++.+.+.+++.....+ +. ....|..+ ..+.|. +.-.|.+||++|||++|++.|+.+
T Consensus 188 ~tgd~~~~~~A~~l~~~~~~~~~~~~~G~~~e~~~~~~~~~~~~~~~~~~Pgh~~e~a~~ll~l~~~~~~~~~~~~a~~~ 267 (384)
T cd00249 188 ATGEQKYLDRADEIADLILDRFIDAESGVVREHFDEDWNPYNGDKGRHQEPGHQFEWAWLLLRIASRSGQAWLIEKARRL 267 (384)
T ss_pred HhCCHHHHHHHHHHHHHHHHHhcCcccCeEEEEECCCCCCCcCcCCCcCCCchHHHHHHHHHHHHhhcCCHHHHHHHHHH
Confidence 9999999999999999999887421111 00 00011101 011222 224668999999999999999876
Q ss_pred cc---ccccccccc-----c--cCC--C-CCCcccCcchHhHHHHHHHHHhCChHHHHHHHHHHHHhcc
Q 043003 316 DK---PCFLGLLAV-----K--ADN--I-AGLHANTHIPLVCGVQNRYELTGDEQSMAMGTFFMDIINS 371 (855)
Q Consensus 316 ~~---~~~~~~la~-----~--~d~--l-~g~HanthiP~~~G~a~~Y~~TGD~~y~~aa~~fwd~V~~ 371 (855)
.+ ..++++... . .+. . .+.....+.-.+.+++.+|++|||+.|++.++.+|+.+.+
T Consensus 268 ~~~~~~~~~d~~~G~~~~~~~~~~~~~~~~~~~~w~~~E~~~a~~~l~~~tgd~~~~~~~~~~~~~~~~ 336 (384)
T cd00249 268 FDLALALGWDPERGGLYYSFLDDGGLLEDDDKRWWPQTEALKAALALAGITGDERYWQWYQRAWAYLWR 336 (384)
T ss_pred HHHHHHhCcCccCCCEEEeeECCCCCcccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 43 222222100 0 000 0 1111112222345678889999999999999988888753
No 7
>PF03663 Glyco_hydro_76: Glycosyl hydrolase family 76 ; InterPro: IPR005198 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,6-mannanases belonging to glycoside hydrolase family 76 (GH76 from CAZY).; PDB: 3K7X_A.
Probab=98.23 E-value=1.1e-05 Score=91.30 Aligned_cols=191 Identities=16% Similarity=0.082 Sum_probs=105.7
Q ss_pred chhhHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHhhh-hhhc------cchhhhcccccccccchHHHHHHHHHhcC
Q 043003 232 YYTIHKIMAGLLDQYTLANNGQALNITIWMADYFNTRVQN-LIAR------SSLERHYQTLNDESGGMNDVLYKLYGITK 304 (855)
Q Consensus 232 yy~~HkI~aGLld~Y~~TG~~kaL~ia~r~AD~~~~r~~~-~~~~------~~~~~~~~~l~~E~GGmneaL~~LY~~TG 304 (855)
|-.+|.+. +++++++.+|+++..+++.+........... .... +.++..| +-.++.++|++||
T Consensus 36 W~~a~~~~-~~~d~~~~t~d~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DD~aw---------~~la~l~aye~t~ 105 (370)
T PF03663_consen 36 WWQAVMLS-ALIDYYRRTGDPTYNDLIQNALLNQRGPNYDSYNPSNGSGDRYYDDNAW---------WALALLRAYELTG 105 (370)
T ss_dssp HHHHHHHH-HHHHHHHHH--HHHHHHHHHHHHHHHHHTTSSS--S------BHHHHHH---------HHHHHHHHHHHH-
T ss_pred ChHHHHHH-HHHHHHHHhCcchHHHHHHHHHHHHhcccccccccccccccCccChHHH---------HHHHHHHHHHhhC
Confidence 44577765 5889999999999999998877776654311 1110 1122222 3469999999999
Q ss_pred CH-----HHHHHHHhcccc--cccccc------ccccC----CCCCCcccCcchHhHHHHHHHHHhCChHHHHHHHHHHH
Q 043003 305 DP-----KHLKLAELFDKP--CFLGLL------AVKAD----NIAGLHANTHIPLVCGVQNRYELTGDEQSMAMGTFFMD 367 (855)
Q Consensus 305 d~-----ryL~LA~~F~~~--~~~~~l------a~~~d----~l~g~HanthiP~~~G~a~~Y~~TGD~~y~~aa~~fwd 367 (855)
++ +||++|+...+. ..++.- ..... ....+.+.+.-|.++.++++|++|||+.|++.|+..|+
T Consensus 106 ~~~~~~~~yL~~A~~i~~~~~~~wd~~~cgGGi~W~~~~~~~~~~~Kna~sN~~~~~laarL~~~t~~~~Yl~~A~~~~~ 185 (370)
T PF03663_consen 106 DQPSDNPKYLDLAKEIFDFLISGWDDTSCGGGIWWSIDDTNSGYDYKNAISNGPAAQLAARLYRITGDQTYLDWAKKIYD 185 (370)
T ss_dssp -H-----HHHHHHHHHHHHHHHTB-SGG-GS-BEEET----TEEEEEEHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHHHHHHHHhcCCccCCCCccccccccCCCCCcccccchHHHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 99 999999976431 111111 11110 00111233445556788999999999999999999999
Q ss_pred HhcccCeEee--cCCCCCCCCCCCccccccCCcCccccchhhHHHHHHHHHHccCCcc-hHHHHHHHHHhhh
Q 043003 368 IINSSHSYAT--GGTSHQEFWTDPKRIATALSAETEESCTTYNMLKVSRYLFKWTKQV-TYADYYERALTNG 436 (855)
Q Consensus 368 ~V~~~~~Y~T--GG~g~~E~f~~~~~l~~~l~~~~~ETCat~nmlkl~~~Lf~~tgd~-~YaD~~ERaLyN~ 436 (855)
.+.+.+++=. |-+-.+ ......-.+ .....=|=++--+|.-+..|++.|++. .|.|..++++--.
T Consensus 186 W~~~~~L~d~~~g~v~Dg--~~~~~~c~~--~~~~~~TYNqG~~l~a~~~Ly~~T~~~~~yl~~A~~la~~~ 253 (370)
T PF03663_consen 186 WMRDSGLIDPSTGLVYDG--INIDGNCTN--INKTKWTYNQGVFLGAAAYLYNATNDEQTYLDRAEKLADAA 253 (370)
T ss_dssp HHHH-HHB--TTS-B--E--E-TTSSS-B---TT---HHHHHHHHHHHHHHHHHH--H-HHHHHHHHHHHHH
T ss_pred HhhcceeEECCCcEEEeC--CccCCCCCc--CCCceechHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 9876444311 111100 000000000 011222333444677889999999776 9999999876433
No 8
>PF07944 DUF1680: Putative glycosyl hydrolase of unknown function (DUF1680); InterPro: IPR012878 The members of this family are sequences derived from hypothetical bacterial and eukaryotic proteins of unknown function. One member of this family is annotated as a possible arabinosidase, but no references were found to back this.
Probab=98.00 E-value=0.00014 Score=86.02 Aligned_cols=192 Identities=16% Similarity=0.144 Sum_probs=114.0
Q ss_pred hhhHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHhhh--hhhccc------hhhhccc-ccccc--cchHHHHHHHHH
Q 043003 233 YTIHKIMAGLLDQYTLANNGQALNITIWMADYFNTRVQN--LIARSS------LERHYQT-LNDES--GGMNDVLYKLYG 301 (855)
Q Consensus 233 y~~HkI~aGLld~Y~~TG~~kaL~ia~r~AD~~~~r~~~--~~~~~~------~~~~~~~-l~~E~--GGmneaL~~LY~ 301 (855)
..+|-|.+ +.-.|..++|+++.+.+.++.|++.+.-.+ .+..+. ....|.. .|+-+ |-|.++|+.-|+
T Consensus 61 ~~g~wl~a-~a~~~~~~~D~~l~~~~d~~V~~l~~~Q~~dGYl~~~~~~~~~~~~~~w~~~~he~Y~~~~ll~gl~~~y~ 139 (520)
T PF07944_consen 61 DVGKWLEA-AAYAYAYTGDPELKAKADEIVDELAAAQQPDGYLGTYPEERNFNPDDRWAPDMHELYCLGKLLEGLIDYYE 139 (520)
T ss_pred cHHHHHHH-HHHHHHHCCCHHHHHHHHHHHHHHHHhccCCceecccccccccccccCCCCCccceehHhHHHHHHHHHHH
Confidence 34566655 557888999999999999999999876321 111111 1123333 11111 226689999999
Q ss_pred hcCCHHHHHHHHhccccc--cccccccccCCCCCCcccCcchHhHHHHHHHHHhCChHHHHHHHHHHHHhcccCeEeecC
Q 043003 302 ITKDPKHLKLAELFDKPC--FLGLLAVKADNIAGLHANTHIPLVCGVQNRYELTGDEQSMAMGTFFMDIINSSHSYATGG 379 (855)
Q Consensus 302 ~TGd~ryL~LA~~F~~~~--~~~~la~~~d~l~g~HanthiP~~~G~a~~Y~~TGD~~y~~aa~~fwd~V~~~~~Y~TGG 379 (855)
.||+++.|+.|.++.+-- ....+.. +.........|-=+..+++++|++|||++|++.|+.|.+.-...-
T Consensus 140 ~tG~~~~L~v~~k~ad~~~~~~~~~~~--~~~~~~~~~~~~~i~~~l~~LY~~Tgd~~yL~lA~~f~~~~~~~~------ 211 (520)
T PF07944_consen 140 ATGNERALDVATKLADWVYRRLSRLGP--EPGQKMGYPEHGGINEALVRLYEITGDERYLDLAEYFVDQRGFDP------ 211 (520)
T ss_pred HHCcHHHHHHHHHHHHHHHHHhccCCH--HHhhcccccccchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC------
Confidence 999999999999885411 0111110 000011112222233788999999999999999999998632111
Q ss_pred CCCCCCCCCCccccccCCcCccccchh--hHHHHHHHHHHccCCcchHHHHHHHHHhhhh
Q 043003 380 TSHQEFWTDPKRIATALSAETEESCTT--YNMLKVSRYLFKWTKQVTYADYYERALTNGV 437 (855)
Q Consensus 380 ~g~~E~f~~~~~l~~~l~~~~~ETCat--~nmlkl~~~Lf~~tgd~~YaD~~ERaLyN~i 437 (855)
.+ .... .+.++.. .....+..+. .-+.+-.-.+++.|||.+|.+..|+..-|-+
T Consensus 212 ~~-~~~~--~d~~~~~-~a~~~~~h~vr~~y~~~g~a~~y~~tgd~~~~~a~~~~w~~v~ 267 (520)
T PF07944_consen 212 YD-LAYG--QDHLPGR-HANTHIGHAVRAMYLYSGAADLYEETGDEEYLDAAENFWDNVV 267 (520)
T ss_pred Cc-hhhc--CccCCCc-cccceeeEEEEhhhhhhHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 00 0111 1122221 1122222222 2344556678899999999999999876644
No 9
>PF03663 Glyco_hydro_76: Glycosyl hydrolase family 76 ; InterPro: IPR005198 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,6-mannanases belonging to glycoside hydrolase family 76 (GH76 from CAZY).; PDB: 3K7X_A.
Probab=97.94 E-value=0.00014 Score=82.54 Aligned_cols=184 Identities=17% Similarity=0.153 Sum_probs=104.2
Q ss_pred hHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhCCCcccccCCchhhhhhhccccccccchh--hHHHHHHHHHHHH
Q 043003 170 GHYLSATAMAWASTRNETVKQKMDAVMSVLSECQKKIGTGYLSAFPSEFFDRLENLVYVWAPYYT--IHKIMAGLLDQYT 247 (855)
Q Consensus 170 Gh~LsA~A~~~a~t~D~~L~~k~d~~Vd~L~~~Q~~~~DGYL~a~~~~~~~r~~~l~~~w~pyy~--~HkI~aGLld~Y~ 247 (855)
|+.++++...+..++|+++++.+...+.....-.. +-|....... . .||- ....+ +++++|+
T Consensus 39 a~~~~~~~d~~~~t~d~~y~~~~~~~~~~~~~~~~---~~~~~~~~~~--~----------~~~DD~aw~~l-a~l~aye 102 (370)
T PF03663_consen 39 AVMLSALIDYYRRTGDPTYNDLIQNALLNQRGPNY---DSYNPSNGSG--D----------RYYDDNAWWAL-ALLRAYE 102 (370)
T ss_dssp HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHTT---SSS--S------------------BHHHHHHHHH-HHHHHHH
T ss_pred HHHHHHHHHHHHHhCcchHHHHHHHHHHHHhcccc---cccccccccc--c----------CccChHHHHHH-HHHHHHH
Confidence 88999999999999998888888877766553321 1133221100 0 1111 11233 4679999
Q ss_pred HhCCh-----hHHHHHHHHHHHHHHHhhhhh-hccchhhhccccc----------ccccchHHHHHHHHHhcCCHHHHHH
Q 043003 248 LANNG-----QALNITIWMADYFNTRVQNLI-ARSSLERHYQTLN----------DESGGMNDVLYKLYGITKDPKHLKL 311 (855)
Q Consensus 248 ~TG~~-----kaL~ia~r~AD~~~~r~~~~~-~~~~~~~~~~~l~----------~E~GGmneaL~~LY~~TGd~ryL~L 311 (855)
+||++ +.|+.|++..+++........ .+ .-.|.... +-.|......++||++|||++||+.
T Consensus 103 ~t~~~~~~~~~yL~~A~~i~~~~~~~wd~~~cgG---Gi~W~~~~~~~~~~~Kna~sN~~~~~laarL~~~t~~~~Yl~~ 179 (370)
T PF03663_consen 103 LTGDQPSDNPKYLDLAKEIFDFLISGWDDTSCGG---GIWWSIDDTNSGYDYKNAISNGPAAQLAARLYRITGDQTYLDW 179 (370)
T ss_dssp HH--H-----HHHHHHHHHHHHHHHTB-SGG-GS----BEEET----TEEEEEEHHHHHHHHHHHHHHHHHH--HHHHHH
T ss_pred hhCCCcchHHHHHHHHHHHHHHHHHhcCCccCCC---CccccccccCCCCCcccccchHHHHHHHHHHHHhcCChHHHHH
Confidence 99999 999999999999986654321 11 11243110 1112234677999999999999999
Q ss_pred HHhccc---c-ccccccc----ccc---C---CC-CCCcccCcchHhHHHHHHHHHhCCh-HHHHHHHHHHHHhccc
Q 043003 312 AELFDK---P-CFLGLLA----VKA---D---NI-AGLHANTHIPLVCGVQNRYELTGDE-QSMAMGTFFMDIINSS 372 (855)
Q Consensus 312 A~~F~~---~-~~~~~la----~~~---d---~l-~g~HanthiP~~~G~a~~Y~~TGD~-~y~~aa~~fwd~V~~~ 372 (855)
|++..+ . .++++-. .+. + .+ ...+...+--.+.|++.+|+.|+|+ .|++.++..-+.+.++
T Consensus 180 A~~~~~W~~~~~L~d~~~g~v~Dg~~~~~~c~~~~~~~~TYNqG~~l~a~~~Ly~~T~~~~~yl~~A~~la~~~~~~ 256 (370)
T PF03663_consen 180 AKKIYDWMRDSGLIDPSTGLVYDGINIDGNCTNINKTKWTYNQGVFLGAAAYLYNATNDEQTYLDRAEKLADAAINH 256 (370)
T ss_dssp HHHHHHHHHH-HHB--TTS-B--EE-TTSSS-B-TT---HHHHHHHHHHHHHHHHHH--H-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcceeEECCCcEEEeCCccCCCCCcCCCceechHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHH
Confidence 998643 1 3332210 000 0 00 0112222333356788999999888 9999999999988753
No 10
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.89 E-value=0.0011 Score=78.84 Aligned_cols=266 Identities=18% Similarity=0.097 Sum_probs=154.1
Q ss_pred CCCCcccCCcccccchhhHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhCCCcccccCCchhhhhhhcccccc---
Q 043003 153 PYGGWEDQKMELRGHFLGHYLSATAMAWASTRNETVKQKMDAVMSVLSECQKKIGTGYLSAFPSEFFDRLENLVYVW--- 229 (855)
Q Consensus 153 ~~gGWe~~dsdlrGH~~Gh~LsA~A~~~a~t~D~~L~~k~d~~Vd~L~~~Q~~~~DGYL~a~~~~~~~r~~~l~~~w--- 229 (855)
.||||-+..--. ..|-|+-+-..+..++|++-+..+..-.+.++.-== -|==-+ .|-|+.-- ..|
T Consensus 199 ~~GGfg~~pKFP----~~~~l~~Llr~~~~~~d~~~~~~~~~TL~~ma~GGI--yDhlgG-----GF~RYStD-~~WlvP 266 (667)
T COG1331 199 EYGGFGSAPKFP----PPHLLLFLLRYSLRTGDERALDMVLRTLDAMARGGI--YDHLGG-----GFFRYSTD-REWLVP 266 (667)
T ss_pred hhCCcCCCCCCC----ChHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHccCC--ccccCC-----ceeeeecC-Cceech
Confidence 357764432211 378888888888889998888888888887753100 010001 12222211 112
Q ss_pred --c-cchhhHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHhhhhhhc------------------cchhhhccccc--
Q 043003 230 --A-PYYTIHKIMAGLLDQYTLANNGQALNITIWMADYFNTRVQNLIAR------------------SSLERHYQTLN-- 286 (855)
Q Consensus 230 --~-pyy~~HkI~aGLld~Y~~TG~~kaL~ia~r~AD~~~~r~~~~~~~------------------~~~~~~~~~l~-- 286 (855)
| +.|.--.++.....+|++|||...+++|....+|+.+.+...-.+ ++.+..-..+.
T Consensus 267 HFEKMLyDnA~l~~~y~~ay~~tgd~~y~~~a~~i~~~l~rel~sp~ggFyss~DAD~~g~EG~~Y~Ws~eEi~~~Lg~d 346 (667)
T COG1331 267 HFEKMLYDNALLLRAYAEAYRATGDDLYRRAAEGILDYLLRELYSPEGGFYSSLDADSDGEEGKYYTWSVEELKEVLGED 346 (667)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCceeecccccCcccCCCeeecCHHHHHHHhccc
Confidence 1 244444566668899999999999999999999999876320000 00000000000
Q ss_pred ---------------cc-------------------------------------------------ccchHHHHHHHHHh
Q 043003 287 ---------------DE-------------------------------------------------SGGMNDVLYKLYGI 302 (855)
Q Consensus 287 ---------------~E-------------------------------------------------~GGmneaL~~LY~~ 302 (855)
.| .|-|..+|++.+++
T Consensus 347 ~~~~~~~f~vs~~GnfeGrnvL~~~~~~~~~~~~~~~~l~~~r~kL~~~R~~R~~P~~Ddkvlt~wNglmi~aLa~a~~~ 426 (667)
T COG1331 347 AELACKYFDVSEEGNFEGRNVLHVPGPLEEAIEEAEEKLERAREKLLAAREKRKQPSRDDKVLTDWNGLMIAALAEAGRV 426 (667)
T ss_pred HHHHHHHcccCCCCCcCCceeecccCchhhhhhhhHHHHHHHHHHHHHHHHhCCCCCCCcceeeccHHHHHHHHHHHHHH
Confidence 00 23467899999999
Q ss_pred cCCHHHHHHHHhcc---ccccccccccccCCCCCCc----------ccCcchHhHHHHHHHHHhCChHHHHHHHHHHHHh
Q 043003 303 TKDPKHLKLAELFD---KPCFLGLLAVKADNIAGLH----------ANTHIPLVCGVQNRYELTGDEQSMAMGTFFMDII 369 (855)
Q Consensus 303 TGd~ryL~LA~~F~---~~~~~~~la~~~d~l~g~H----------anthiP~~~G~a~~Y~~TGD~~y~~aa~~fwd~V 369 (855)
+||++|+++|++-. ...+++. .+...+ ..++.=.+.|+..+|++|+|.+|++.|+.+++.+
T Consensus 427 ~~d~~~l~~A~~~~~fi~~~l~~~------rl~~~~~~G~a~~~g~leDYA~~i~gll~lye~t~d~~yL~~A~~L~~~~ 500 (667)
T COG1331 427 LGDPEYLEAAERAADFILDNLYVD------RLLRRYRGGEAAVAGLLEDYAFLILGLLALYEATGDLAYLEKAIELADEA 500 (667)
T ss_pred cCChHHHHHHHHHHHHHHHhhccc------chheeeecCcccccccchhHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHH
Confidence 99999999998642 2222221 111111 1223334578899999999999999999999998
Q ss_pred cccCeEeecCC----CCCCCC-CCCccccccCCcCccccchhhHHHHHHHHHHccCCcchHHHHHHHHH--hhhhcccC
Q 043003 370 NSSHSYATGGT----SHQEFW-TDPKRIATALSAETEESCTTYNMLKVSRYLFKWTKQVTYADYYERAL--TNGVLGIQ 441 (855)
Q Consensus 370 ~~~~~Y~TGG~----g~~E~f-~~~~~l~~~l~~~~~ETCat~nmlkl~~~Lf~~tgd~~YaD~~ERaL--yN~iLa~q 441 (855)
..+--=..||. +.+|.. ..+... .+.-.++=+++.. .-.-+|-++|+|.+|.|..|++| +=+.++..
T Consensus 501 i~~f~d~~gGf~~t~~~~~~l~ir~~~~----~D~a~~S~na~~~-~~L~~Ls~ltg~~~y~e~A~~~L~a~~~~~~~~ 574 (667)
T COG1331 501 IADFWDDEGGFYDTPSDSEDLLIRPKEP----TDGATPSGNAVAA-QALLRLSLLTGDARYLEAAEDILQAFAGLAERA 574 (667)
T ss_pred HHHhcCCCCCcccCCCcccccccCCCCC----CCCCCCCHHHHHH-HHHHHHHhhcCchhHHHHHHHHHHHHHHHHHhC
Confidence 64222122331 111211 111111 1222233333322 22234458899999999999999 66666654
No 11
>COG3533 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.87 E-value=2.4e-05 Score=89.04 Aligned_cols=183 Identities=16% Similarity=0.090 Sum_probs=112.5
Q ss_pred cccc-cch---hhHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhCCCcccccCCchhhhhhhccccccccchhhHH
Q 043003 162 MELR-GHF---LGHYLSATAMAWASTRNETVKQKMDAVMSVLSECQKKIGTGYLSAFPSEFFDRLENLVYVWAPYYTIHK 237 (855)
Q Consensus 162 sdlr-GH~---~Gh~LsA~A~~~a~t~D~~L~~k~d~~Vd~L~~~Q~~~~DGYL~a~~~~~~~r~~~l~~~w~pyy~~Hk 237 (855)
++|| +|+ +||-++|+.-.+..|+...+.+-+..+.|.|+..=. +.+ + =.+-|.+|-
T Consensus 122 ~nlr~~HelY~aghLieg~va~~qaTGkr~lldV~~rlADhi~tvfg----------p~~---------~-q~~g~~gH~ 181 (589)
T COG3533 122 GNLRPNHELYCAGHLIEGGVAAHQATGKRRLLDVVCRLADHIATVFG----------PEE---------D-QVPGYCGHP 181 (589)
T ss_pred hccccchHHHHhHHHHhhhhHHHHhhCcchHHHHHHHHHHhhhhhcC----------ccc---------c-ccccccCCC
Confidence 3455 476 589999999999999999999999998888876543 110 0 014455665
Q ss_pred -HHHHHHHHHHHhCChhHHHHHHHHHHHHHHHhhhhhhccchhhhccccccccc-chHHHHHHHHHhcCCHHHHHHHHhc
Q 043003 238 -IMAGLLDQYTLANNGQALNITIWMADYFNTRVQNLIARSSLERHYQTLNDESG-GMNDVLYKLYGITKDPKHLKLAELF 315 (855)
Q Consensus 238 -I~aGLld~Y~~TG~~kaL~ia~r~AD~~~~r~~~~~~~~~~~~~~~~l~~E~G-GmneaL~~LY~~TGd~ryL~LA~~F 315 (855)
|+.+|++-|+.||+++.|++|+++.++-... + ..+..+++. .+|.-.. =....+++||++|||+.+...+++|
T Consensus 182 eielAl~~Ly~~Tg~~rYL~LA~~Fi~~rg~~--P-~~~rg~e~~--~gHAvr~iyl~~G~A~l~~~~gDds~r~~~~~l 256 (589)
T COG3533 182 EIELALAELYRLTGDQRYLDLARRFIHQRGVE--P-LAQRGDELE--GGHAVRQIYLYIGAADLAEETGDDSLRQAAEFL 256 (589)
T ss_pred chhHHHHHHHHHhcChHHHHHHHHHHHHhccC--h-hhcCchhhh--hhhHHHHHHHhhhHHHHHHHhCCHHHHHHHHHH
Confidence 7888999999999999999999988864332 1 111111111 1111000 0124789999999999999999998
Q ss_pred ccccccccc--ccccCCCCCCc--ccCcchHh---------HHH----HHHHHHhCChHHHHHHHH-HHHHhc
Q 043003 316 DKPCFLGLL--AVKADNIAGLH--ANTHIPLV---------CGV----QNRYELTGDEQSMAMGTF-FMDIIN 370 (855)
Q Consensus 316 ~~~~~~~~l--a~~~d~l~g~H--anthiP~~---------~G~----a~~Y~~TGD~~y~~aa~~-fwd~V~ 370 (855)
.+.---..+ ..|.. -++.| ....+|.. +|+ -++...++|..|.+.-++ ..+-+.
T Consensus 257 W~~~t~k~~YitGG~g-~~~E~F~~~ydlpn~~~yAEtCas~~l~~~a~Rml~~~~d~~yaDvmErALYN~iL 328 (589)
T COG3533 257 WQNVTTRQSYITGGNG-SSNEHFGPDYDLPNRTAYAETCASYNLLKLARRMLGWGPDSQYADVMERALYNHIL 328 (589)
T ss_pred HHHhhhhheEEecccC-CccccCCccccCcccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHhccc
Confidence 752110000 01110 11122 12234432 343 244678899999877554 444443
No 12
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.82 E-value=0.00027 Score=83.93 Aligned_cols=132 Identities=17% Similarity=0.084 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHhhh--hhhccchhhh-cccccccccchHHHHHHHHHhcCCHHHHHHHH
Q 043003 237 KIMAGLLDQYTLANNGQALNITIWMADYFNTRVQN--LIARSSLERH-YQTLNDESGGMNDVLYKLYGITKDPKHLKLAE 313 (855)
Q Consensus 237 kI~aGLld~Y~~TG~~kaL~ia~r~AD~~~~r~~~--~~~~~~~~~~-~~~l~~E~GGmneaL~~LY~~TGd~ryL~LA~ 313 (855)
++.+||..+++++|+++.+++|++.++++.+.+.. +.+.+-.... ...+.+.+.-+..+|..||++|+|.+||+.|+
T Consensus 415 lmi~aLa~a~~~~~d~~~l~~A~~~~~fi~~~l~~~rl~~~~~~G~a~~~g~leDYA~~i~gll~lye~t~d~~yL~~A~ 494 (667)
T COG1331 415 LMIAALAEAGRVLGDPEYLEAAERAADFILDNLYVDRLLRRYRGGEAAVAGLLEDYAFLILGLLALYEATGDLAYLEKAI 494 (667)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhcccchheeeecCcccccccchhHHHHHHHHHHHHHhhCcHHHHHHHH
Confidence 35577999999999999999999999999987642 1111100000 00011122235679999999999999999999
Q ss_pred hcccc---ccccccccc--------cCCC--CCCcccCcchHh-----HHHHHHHHHhCChHHHHHHHHHHHHh
Q 043003 314 LFDKP---CFLGLLAVK--------ADNI--AGLHANTHIPLV-----CGVQNRYELTGDEQSMAMGTFFMDII 369 (855)
Q Consensus 314 ~F~~~---~~~~~la~~--------~d~l--~g~HanthiP~~-----~G~a~~Y~~TGD~~y~~aa~~fwd~V 369 (855)
.+.+. .|+++. .| .+.+ ...-..+-+|.- ..+.++-.+|||..|.+.|+...+.+
T Consensus 495 ~L~~~~i~~f~d~~-gGf~~t~~~~~~l~ir~~~~~D~a~~S~na~~~~~L~~Ls~ltg~~~y~e~A~~~L~a~ 567 (667)
T COG1331 495 ELADEAIADFWDDE-GGFYDTPSDSEDLLIRPKEPTDGATPSGNAVAAQALLRLSLLTGDARYLEAAEDILQAF 567 (667)
T ss_pred HHHHHHHHHhcCCC-CCcccCCCcccccccCCCCCCCCCCCCHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHH
Confidence 87542 233332 11 0000 001112233332 34567789999999998887655544
No 13
>PF07470 Glyco_hydro_88: Glycosyl Hydrolase Family 88; InterPro: IPR010905 Unsaturated glucuronyl hydrolase catalyses the hydrolytic release of unsaturated glucuronic acids from oligosaccharides produced by the reactions of polysaccharide lyases [].; PDB: 3K11_A 2GH4_A 2D8L_A 1NC5_A 3PMM_A 2FV1_B 2AHF_A 2FV0_A 2AHG_B 2D5J_A ....
Probab=97.62 E-value=0.002 Score=71.96 Aligned_cols=233 Identities=16% Similarity=0.097 Sum_probs=130.0
Q ss_pred hHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhCCCcccccCCchhhhhhhccccccccchhhHHHHHHHHHHHHHh
Q 043003 170 GHYLSATAMAWASTRNETVKQKMDAVMSVLSECQKKIGTGYLSAFPSEFFDRLENLVYVWAPYYTIHKIMAGLLDQYTLA 249 (855)
Q Consensus 170 Gh~LsA~A~~~a~t~D~~L~~k~d~~Vd~L~~~Q~~~~DGYL~a~~~~~~~r~~~l~~~w~pyy~~HkI~aGLld~Y~~T 249 (855)
|-++.++..+|..|+|+++++.+...++.+...+. . ... -+.+ ..++. ++..|+.|
T Consensus 28 G~~~~gl~~~~~~tgd~~~~~~a~~~~~~~~~~~~--~-----~~~----------~d~~---~~g~~----~~~~y~~t 83 (336)
T PF07470_consen 28 GVFWYGLLEAYEYTGDERYLDYAERWADRFIEEDG--S-----DYN----------LDDH---DIGFL----LLDLYERT 83 (336)
T ss_dssp HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH--T-----TTS----------CCGT---THHHH----HHHHHHHH
T ss_pred hhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhccC--C-----ccC----------Cchh---hhHHH----HHHHHHHh
Confidence 87888889999999999999999999998887766 2 000 0111 12222 35789999
Q ss_pred CChhHHHHHHHHHHHHHHHhhhhhhc-cc---hhhhcccccccccchH-HHHHHHHHhcCCHHHHHHHHhccc---cccc
Q 043003 250 NNGQALNITIWMADYFNTRVQNLIAR-SS---LERHYQTLNDESGGMN-DVLYKLYGITKDPKHLKLAELFDK---PCFL 321 (855)
Q Consensus 250 G~~kaL~ia~r~AD~~~~r~~~~~~~-~~---~~~~~~~l~~E~GGmn-eaL~~LY~~TGd~ryL~LA~~F~~---~~~~ 321 (855)
|+++.++++.+.+|++.++..+...+ +. ....|..+..- .|+ ..|+++++.|||++|++.|....+ +..+
T Consensus 84 ~d~~y~~~~~~~a~~~l~~~~~~~~G~~~~~~~~~~~~wiD~~--~M~~p~l~~~~~~tgd~~~~~~a~~q~~~~~~~~~ 161 (336)
T PF07470_consen 84 GDEKYKDAAIQAADWLLARRPRTSDGGFWHNRPYPNQVWIDGM--YMNLPFLAWAGKLTGDPKYLDEAVRQFRLTRKYLY 161 (336)
T ss_dssp -THHHHHHHHHHHHHHHHTSCBECTGCBECTTTSTTEEETTHH--HHHHHHHHHHHHHHTGHHHHHHHHHHHHHHHHHHB
T ss_pred CCHHHHHHHHHHHHHHHHhCCCCCCCccccCCCCCCceeeccc--cccHHHHHHHHHHHCCcHHHHHHHHHHHHHHHhcc
Confidence 99999999999999888765431011 00 01111111111 144 577999999999999999865422 2233
Q ss_pred ccccc---ccCCCCC-------CcccCcchHhHHHHHHHHHhCC-----hHHHHHHHHHHHHhcccCeEeecCCCCCCCC
Q 043003 322 GLLAV---KADNIAG-------LHANTHIPLVCGVQNRYELTGD-----EQSMAMGTFFMDIINSSHSYATGGTSHQEFW 386 (855)
Q Consensus 322 ~~la~---~~d~l~g-------~HanthiP~~~G~a~~Y~~TGD-----~~y~~aa~~fwd~V~~~~~Y~TGG~g~~E~f 386 (855)
++... ..-...+ .++-.+-..+.|+++.|+...+ +.+++.++.+.+.+.+.+- ..|... -.+
T Consensus 162 d~~tGl~~h~~~~~~~~~~s~~~WsRG~gW~~~Gl~~~l~~lp~~~~~~~~~~~~~~~~~~~l~~~q~-~~G~w~--~~~ 238 (336)
T PF07470_consen 162 DPETGLYYHGYTYQGYADWSDSFWSRGNGWAIYGLAEVLEYLPEDHPERDELLEIAKKLADALARYQD-EDGLWY--QDL 238 (336)
T ss_dssp -TTTSSBESEEETTSSSTTST--BHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTST-TTSBEB--SBT
T ss_pred CCCCCceeeccCCCCCcCcccccCcchhhHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHhcCC-CCCCcc--eec
Confidence 32100 0000000 1122233445899999988744 5666677777766654222 111110 111
Q ss_pred CCCccccccCCcCccccchhh----HHHHHHHHHHccCCcchHHHHHHHHHhhhhccc
Q 043003 387 TDPKRIATALSAETEESCTTY----NMLKVSRYLFKWTKQVTYADYYERALTNGVLGI 440 (855)
Q Consensus 387 ~~~~~l~~~l~~~~~ETCat~----nmlkl~~~Lf~~tgd~~YaD~~ERaLyN~iLa~ 440 (855)
..|. ...+.||.+|. ++++-. ...+..+.+|.+.+||++ ++++..
T Consensus 239 ~~~~------~~~~~etSatA~~a~~l~~gi--~~g~~d~~~y~~~a~~a~-~~l~~~ 287 (336)
T PF07470_consen 239 DDPD------PGNYRETSATAMFAYGLLRGI--RLGLLDPEEYRPAAEKAL-EALLSN 287 (336)
T ss_dssp TTTT------TTS-BEHHHHHHHHHHHHHHH--HTTSSTHHHHHHHHHHHH-HHHHHC
T ss_pred CCCC------CCCcccHHHHHHHHHHHHHHH--HcCCCccHHHHHHHHHHH-HHHHhC
Confidence 2221 13566766654 333311 123344678999998864 566665
No 14
>cd04791 LanC_SerThrkinase Lanthionine synthetase C-like domain associated with serine threonine kinases. Some members of this subgroup lack the zinc binding site and the active site residues, and therefore are most likely inactive. The function of this domain is unknown.
Probab=97.48 E-value=0.0042 Score=68.30 Aligned_cols=176 Identities=16% Similarity=-0.017 Sum_probs=109.5
Q ss_pred HHHHHHHHHHHhCChhHHHHHHHHHHHHHHHhhhh--hhccchhh--hcccccccccchHHHHHHHHHhcCCHHHHHHHH
Q 043003 238 IMAGLLDQYTLANNGQALNITIWMADYFNTRVQNL--IARSSLER--HYQTLNDESGGMNDVLYKLYGITKDPKHLKLAE 313 (855)
Q Consensus 238 I~aGLld~Y~~TG~~kaL~ia~r~AD~~~~r~~~~--~~~~~~~~--~~~~l~~E~GGmneaL~~LY~~TGd~ryL~LA~ 313 (855)
+..+|+..|+. ++++.+++|.+.++++.+...+. ...+.... .....|. ..|+..+|.+||+.|||++|++.|+
T Consensus 88 ~~~~ll~l~~~-~~~~~l~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~G~~hG-~aGi~~~L~~l~~~t~d~~~l~~A~ 165 (321)
T cd04791 88 IGLALLYFART-GDPALLEAAAKIAELLAEALERGDPALLWPDFDRVDHGLLHG-WAGIALFLLRLYKATGDSRYLELAE 165 (321)
T ss_pred HHHHHHHHHhc-CChHHHHHHHHHHHHHHHHhhccccccccccCCCCCCccccC-cHHHHHHHHHHHHHHCCHHHHHHHH
Confidence 34456678888 99999999999999998764320 00000000 0011122 2368899999999999999999998
Q ss_pred hcccc---cccccc-----ccccCC--CCCCcccCcchHhHHHHHHHHHhCChHHHHHHHHHHHHhcccCeEeecCCCCC
Q 043003 314 LFDKP---CFLGLL-----AVKADN--IAGLHANTHIPLVCGVQNRYELTGDEQSMAMGTFFMDIINSSHSYATGGTSHQ 383 (855)
Q Consensus 314 ~F~~~---~~~~~l-----a~~~d~--l~g~HanthiP~~~G~a~~Y~~TGD~~y~~aa~~fwd~V~~~~~Y~TGG~g~~ 383 (855)
...+. .+.+.. ..+.+. ....|-+.. +.....++|++|+|++|++.++...+.+.+.-
T Consensus 166 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~wchG~aG--i~~~l~~l~~~~~d~~~~~~a~~~~~~~~~~~---------- 233 (321)
T cd04791 166 EALDKELARAVVDDGGLLQVDEGARLLPYLCSGSAG--LGLLMLRLEAITGDKRWRDEADGIAHAALSSC---------- 233 (321)
T ss_pred HHHHHHHHhhccCCCCceEcCCCCccCcccCCCcHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHHhhhh----------
Confidence 76431 111100 000000 001111110 01234567899999999999998888876321
Q ss_pred CCCCCCccccccCCcCccccchhhHHHHHHHHHHccCCcchHHHHHHHHHhhhhcccC
Q 043003 384 EFWTDPKRIATALSAETEESCTTYNMLKVSRYLFKWTKQVTYADYYERALTNGVLGIQ 441 (855)
Q Consensus 384 E~f~~~~~l~~~l~~~~~ETCat~nmlkl~~~Lf~~tgd~~YaD~~ERaLyN~iLa~q 441 (855)
+ ...+=.|.+.+++.....+.+.++|.+|.+..++.. ..++..-
T Consensus 234 --~-----------~~~~lchG~~G~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 277 (321)
T cd04791 234 --Y-----------ANPGLFSGTAGLGAHLNDLAAEGDNALYKAAAERLA-LYLIATA 277 (321)
T ss_pred --c-----------cCccccCCcHhHHHHHHhhcccccChHHHHHHHHHH-HHhcccc
Confidence 1 112345667777888888889999999999999865 6777553
No 15
>cd04791 LanC_SerThrkinase Lanthionine synthetase C-like domain associated with serine threonine kinases. Some members of this subgroup lack the zinc binding site and the active site residues, and therefore are most likely inactive. The function of this domain is unknown.
Probab=97.38 E-value=0.004 Score=68.43 Aligned_cols=185 Identities=14% Similarity=0.015 Sum_probs=108.6
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhCCCcccccCCchhhhhhhccccccccchhhHHHHHHHHHHHHHhCC
Q 043003 172 YLSATAMAWASTRNETVKQKMDAVMSVLSECQKKIGTGYLSAFPSEFFDRLENLVYVWAPYYTIHKIMAGLLDQYTLANN 251 (855)
Q Consensus 172 ~LsA~A~~~a~t~D~~L~~k~d~~Vd~L~~~Q~~~~DGYL~a~~~~~~~r~~~l~~~w~pyy~~HkI~aGLld~Y~~TG~ 251 (855)
.+-++..++.. +|+++.+.+.++++.|.+.... .+.+. .++.. ......+.-=+++ |..+|+..|+.||+
T Consensus 88 ~~~~ll~l~~~-~~~~~l~~a~~~~~~l~~~~~~-~~~~~-~~~~~-----~~~~~G~~hG~aG--i~~~L~~l~~~t~d 157 (321)
T cd04791 88 IGLALLYFART-GDPALLEAAAKIAELLAEALER-GDPAL-LWPDF-----DRVDHGLLHGWAG--IALFLLRLYKATGD 157 (321)
T ss_pred HHHHHHHHHhc-CChHHHHHHHHHHHHHHHHhhc-ccccc-ccccC-----CCCCCccccCcHH--HHHHHHHHHHHHCC
Confidence 44555666667 9999999999999999876542 11111 11000 0000111111122 55668899999999
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhhccc--hhhhccccccccc--chHHHHHHHHHhcCCHHHHHHHHhccccccccccccc
Q 043003 252 GQALNITIWMADYFNTRVQNLIARSS--LERHYQTLNDESG--GMNDVLYKLYGITKDPKHLKLAELFDKPCFLGLLAVK 327 (855)
Q Consensus 252 ~kaL~ia~r~AD~~~~r~~~~~~~~~--~~~~~~~l~~E~G--GmneaL~~LY~~TGd~ryL~LA~~F~~~~~~~~la~~ 327 (855)
++.++.|.+.++++.+.+.+.-.++. .+.......--+| ||..++.+||++|+|++|++.|+...+... . ..
T Consensus 158 ~~~l~~A~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~wchG~aGi~~~l~~l~~~~~d~~~~~~a~~~~~~~~-~---~~ 233 (321)
T cd04791 158 SRYLELAEEALDKELARAVVDDGGLLQVDEGARLLPYLCSGSAGLGLLMLRLEAITGDKRWRDEADGIAHAAL-S---SC 233 (321)
T ss_pred HHHHHHHHHHHHHHHHhhccCCCCceEcCCCCccCcccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh-h---hh
Confidence 99999999999999887643111110 0000000000123 788999999999999999999988754221 0 00
Q ss_pred cCCCCCCcccCcchHhHHHHHHHHHhCChHHHHHHHHHHHHhccc
Q 043003 328 ADNIAGLHANTHIPLVCGVQNRYELTGDEQSMAMGTFFMDIINSS 372 (855)
Q Consensus 328 ~d~l~g~HanthiP~~~G~a~~Y~~TGD~~y~~aa~~fwd~V~~~ 372 (855)
.....-.|=... +..-+..+++.++|+.|++.+.++.+.+..+
T Consensus 234 ~~~~~lchG~~G--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (321)
T cd04791 234 YANPGLFSGTAG--LGAHLNDLAAEGDNALYKAAAERLALYLIAT 276 (321)
T ss_pred ccCccccCCcHh--HHHHHHhhcccccChHHHHHHHHHHHHhccc
Confidence 000011111000 0112234578999999999999888877643
No 16
>PF07221 GlcNAc_2-epim: N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase); InterPro: IPR010819 N-acylglucosamine 2-epimerase (AGE, 5.3.1.8 from EC) reversibly converts N-acyl-D-glucosamine to N-acyl-D-mannosamine, the latter ultimately being converted to cytidine 5'- monophospho-N-acetylneuraminic acid, which is used as a precursor for the synthesis of connective tissues, blood cells and cellular macromolecules. AGE is a renin-binding protein (RnBP), which might act as a cellular rennin inhibitor. AGE functions as a homodimer, where monomer has an alpha(6)/alpha(6)-barrel structure commonly found in glucoamylases and cellulases []. This family contains a number of eukaryotic and bacterial AGE enzymes.; GO: 0004476 mannose-6-phosphate isomerase activity, 0006013 mannose metabolic process; PDB: 1FP3_B 2RGK_B 3GT5_A 2GZ6_B 2ZBL_E 2AFA_A.
Probab=97.00 E-value=0.0059 Score=68.35 Aligned_cols=192 Identities=19% Similarity=0.162 Sum_probs=107.1
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhC-CCcccccCCchhhhhhhccccccccchhhHHHHHHHHHHHHHh
Q 043003 171 HYLSATAMAWASTRNETVKQKMDAVMSVLSECQKKI-GTGYLSAFPSEFFDRLENLVYVWAPYYTIHKIMAGLLDQYTLA 249 (855)
Q Consensus 171 h~LsA~A~~~a~t~D~~L~~k~d~~Vd~L~~~Q~~~-~DGYL~a~~~~~~~r~~~l~~~w~pyy~~HkI~aGLld~Y~~T 249 (855)
..|-|+|. +..++|++.++.++++++.|.+.-..- ..||...++.. +...+ ...|+ +|++++ +++.|+++
T Consensus 85 f~l~ala~-~~~tg~~~~~~~A~~~~~~l~~~~~d~~~g~~~~~~~~~----~~~~r-~~n~~--mhl~eA-~l~l~~~~ 155 (346)
T PF07221_consen 85 FALLALAE-ARATGDPEALELAEQTLEFLERRFWDPEGGGYRESFDPD----WSPPR-GQNPH--MHLLEA-FLALYEAT 155 (346)
T ss_dssp HHHHHHHH-HHCTT-TTHHHHHHHHHHHHHHHTEETTTTEE--EETTT----SSCBE-EHHHH--HHHHHH-HHHHHHHH
T ss_pred HHHHHHHH-HHHhCChhHHHHHHHHHHHHHHHhcccccCcceeccCCc----cccCC-CCChh--HHHHHH-HHHHHHhc
Confidence 55888888 778999999999999999998775311 23455443321 11111 11122 688887 46899999
Q ss_pred CChhHHHHHHHHHHHHHHHhhhhhhccch---hhhccccc------------ccccchHHH---HHHHH--HhcCCHHHH
Q 043003 250 NNGQALNITIWMADYFNTRVQNLIARSSL---ERHYQTLN------------DESGGMNDV---LYKLY--GITKDPKHL 309 (855)
Q Consensus 250 G~~kaL~ia~r~AD~~~~r~~~~~~~~~~---~~~~~~l~------------~E~GGmnea---L~~LY--~~TGd~ryL 309 (855)
|+++.++.|.++++.+..++-..-.+.-. ...|.+.. .+.|=..|. |.++. ...++++++
T Consensus 156 ~~~~~~~~a~~l~~~~~~~f~~~~~g~~~E~f~~dw~~~~~~~~~d~~~~~~~~pGH~~E~~wll~~~~~~~~~~~~~~~ 235 (346)
T PF07221_consen 156 GDPRYLDRAEELLDLFLDRFADPESGALPEFFDRDWNPLPDGSGDDTFRGRIVEPGHDFEWAWLLLEAARLTGRGDPDWL 235 (346)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHCCTTEETSEEETTSEBETTTTTTHSTTTSSB-HHHHHHHHHHHHHHHHHCHCT-HTHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHhccCeeeeeeccccccccccccccccccCccCCchhHHHHHHHHHHHHhcccccHHHH
Confidence 99999999999999999776421011000 12232211 233322343 34444 345789999
Q ss_pred HHHHhcccccc---ccccccc----cCCCCCCcccC-----cchHhHHHHHHHHHhCChHHHHHHHHHHHHhcc
Q 043003 310 KLAELFDKPCF---LGLLAVK----ADNIAGLHANT-----HIPLVCGVQNRYELTGDEQSMAMGTFFMDIINS 371 (855)
Q Consensus 310 ~LA~~F~~~~~---~~~la~~----~d~l~g~Hant-----hiP~~~G~a~~Y~~TGD~~y~~aa~~fwd~V~~ 371 (855)
+.|+.+....+ +++...+ .|........+ |.=.+.+++.+|++|||+.|++.++..|+.+.+
T Consensus 236 ~~a~~l~~~~~~~G~d~~~gG~~~~~d~~g~~~~~~k~wW~q~Eal~a~~~~~~~tg~~~~~~~~~~~~~~~~~ 309 (346)
T PF07221_consen 236 ERARRLFDFALEHGWDREGGGLFYSVDRDGKPPDRSKRWWPQAEALKALLAAYELTGDEKYLDWARRVWDYIFR 309 (346)
T ss_dssp HHHHHHHHHHHHHHBSTTTSSB-SEEETTS-BSST-EEHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHheEecCCCeEEEEEeCCCCccccCccccHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHH
Confidence 88876543111 1110000 00000000011 111136788999999999999999999988764
No 17
>PF07221 GlcNAc_2-epim: N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase); InterPro: IPR010819 N-acylglucosamine 2-epimerase (AGE, 5.3.1.8 from EC) reversibly converts N-acyl-D-glucosamine to N-acyl-D-mannosamine, the latter ultimately being converted to cytidine 5'- monophospho-N-acetylneuraminic acid, which is used as a precursor for the synthesis of connective tissues, blood cells and cellular macromolecules. AGE is a renin-binding protein (RnBP), which might act as a cellular rennin inhibitor. AGE functions as a homodimer, where monomer has an alpha(6)/alpha(6)-barrel structure commonly found in glucoamylases and cellulases []. This family contains a number of eukaryotic and bacterial AGE enzymes.; GO: 0004476 mannose-6-phosphate isomerase activity, 0006013 mannose metabolic process; PDB: 1FP3_B 2RGK_B 3GT5_A 2GZ6_B 2ZBL_E 2AFA_A.
Probab=96.90 E-value=0.015 Score=65.04 Aligned_cols=258 Identities=14% Similarity=0.098 Sum_probs=136.1
Q ss_pred hhhHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhC-CCcccccCCchhhhhhhccccccccchhhHHHHHHHHHHH
Q 043003 168 FLGHYLSATAMAWASTRNETVKQKMDAVMSVLSECQKKI-GTGYLSAFPSEFFDRLENLVYVWAPYYTIHKIMAGLLDQY 246 (855)
Q Consensus 168 ~~Gh~LsA~A~~~a~t~D~~L~~k~d~~Vd~L~~~Q~~~-~DGYL~a~~~~~~~r~~~l~~~w~pyy~~HkI~aGLld~Y 246 (855)
..+..|=..|.++. .++++.++.++..++.|.+.-... ..||........ .. ...- .-|..-.++.|+.. +
T Consensus 22 ~q~R~~~~fa~a~~-~g~~~~l~~A~~~~~fl~~~~~D~~~Gg~~~~~~~~~--~~---~~~~-~~Y~~af~l~ala~-~ 93 (346)
T PF07221_consen 22 VQARQLYTFARAYR-LGRPEYLELAEHGFDFLRKHFRDPEYGGWYRSLDDGG--PL---DPQK-DLYDQAFALLALAE-A 93 (346)
T ss_dssp HHHHHHHHHHHHHH-TTSHHHHHHHHHHHHHHHHTTBTTTTSSBSSEEETTE--EE---E--E-EHHHHHHHHHHHHH-H
T ss_pred eeHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHhcccCCCCCEEEEeCCCC--CC---cccc-chHHHHHHHHHHHH-H
Confidence 35888888888888 889999999999999998876421 346655442211 00 0111 23444455666744 8
Q ss_pred HHhCChhHHHHHHHHHHHHHHHhhhhhhcc-ch--hhhcccc---cccccchHHHHHHHHHhcCCHHHHHHHHhccc---
Q 043003 247 TLANNGQALNITIWMADYFNTRVQNLIARS-SL--ERHYQTL---NDESGGMNDVLYKLYGITKDPKHLKLAELFDK--- 317 (855)
Q Consensus 247 ~~TG~~kaL~ia~r~AD~~~~r~~~~~~~~-~~--~~~~~~l---~~E~GGmneaL~~LY~~TGd~ryL~LA~~F~~--- 317 (855)
.+||++++++.|.++.+.+.+++.....+. .. ...+... +.- -=+.+++..||++|||++|++.|+.+.+
T Consensus 94 ~~tg~~~~~~~A~~~~~~l~~~~~d~~~g~~~~~~~~~~~~~r~~n~~-mhl~eA~l~l~~~~~~~~~~~~a~~l~~~~~ 172 (346)
T PF07221_consen 94 RATGDPEALELAEQTLEFLERRFWDPEGGGYRESFDPDWSPPRGQNPH-MHLLEAFLALYEATGDPRYLDRAEELLDLFL 172 (346)
T ss_dssp HCTT-TTHHHHHHHHHHHHHHHTEETTTTEE--EETTTSSCBEEHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCChhHHHHHHHHHHHHHHHhcccccCcceeccCCccccCCCCChh-HHHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Confidence 899999999999999999999874311111 00 0111111 000 0024688899999999999999986542
Q ss_pred ccccccccc------ccC--CCC-CCcccCcch--HhHHHH-------HHHH---HhCChHHHHHHHHHHHHhcccCeEe
Q 043003 318 PCFLGLLAV------KAD--NIA-GLHANTHIP--LVCGVQ-------NRYE---LTGDEQSMAMGTFFMDIINSSHSYA 376 (855)
Q Consensus 318 ~~~~~~la~------~~d--~l~-g~HanthiP--~~~G~a-------~~Y~---~TGD~~y~~aa~~fwd~V~~~~~Y~ 376 (855)
..|+++-.. ..| .+. +.+.++-.+ +-.||. ..+. ..+++.+++.++...+.....-.-.
T Consensus 173 ~~f~~~~~g~~~E~f~~dw~~~~~~~~~d~~~~~~~~pGH~~E~~wll~~~~~~~~~~~~~~~~~a~~l~~~~~~~G~d~ 252 (346)
T PF07221_consen 173 DRFADPESGALPEFFDRDWNPLPDGSGDDTFRGRIVEPGHDFEWAWLLLEAARLTGRGDPDWLERARRLFDFALEHGWDR 252 (346)
T ss_dssp TTCHHCCTTEETSEEETTSEBETTTTTTHSTTTSSB-HHHHHHHHHHHHHHHHHCHCT-HTHHHHHHHHHHHHHHHHBST
T ss_pred HHHHHhccCeeeeeeccccccccccccccccccCccCCchhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHheEec
Confidence 122221100 000 000 001001111 113442 2233 4577888888877777655322212
Q ss_pred ecC-CCCCCCCCCCccccccCCcCccccchhhHHHHHHHHHHccCCcchHHHHHHHHH---hhhhccc
Q 043003 377 TGG-TSHQEFWTDPKRIATALSAETEESCTTYNMLKVSRYLFKWTKQVTYADYYERAL---TNGVLGI 440 (855)
Q Consensus 377 TGG-~g~~E~f~~~~~l~~~l~~~~~ETCat~nmlkl~~~Lf~~tgd~~YaD~~ERaL---yN~iLa~ 440 (855)
.|| +-.. ...... +. ....-.=...+.|+-.-.+++.|+|.+|.+.++++. +++++..
T Consensus 253 ~~gG~~~~--~d~~g~-~~---~~~k~wW~q~Eal~a~~~~~~~tg~~~~~~~~~~~~~~~~~~~~d~ 314 (346)
T PF07221_consen 253 EGGGLFYS--VDRDGK-PP---DRSKRWWPQAEALKALLAAYELTGDEKYLDWARRVWDYIFRHFIDP 314 (346)
T ss_dssp TTSSB-SE--EETTS--BS---ST-EEHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHTB-T
T ss_pred CCCeEEEE--EeCCCC-cc---ccCccccHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhCCCC
Confidence 222 2100 000000 10 111111223455566677888899999999988876 6665544
No 18
>PTZ00470 glycoside hydrolase family 47 protein; Provisional
Probab=96.65 E-value=0.017 Score=68.33 Aligned_cols=126 Identities=18% Similarity=0.177 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhCCCcccccCCchhhhhhhccccccccchhhHHHHHHHHHHHHHhC
Q 043003 171 HYLSATAMAWASTRNETVKQKMDAVMSVLSECQKKIGTGYLSAFPSEFFDRLENLVYVWAPYYTIHKIMAGLLDQYTLAN 250 (855)
Q Consensus 171 h~LsA~A~~~a~t~D~~L~~k~d~~Vd~L~~~Q~~~~DGYL~a~~~~~~~r~~~l~~~w~pyy~~HkI~aGLld~Y~~TG 250 (855)
--++++.-++-..-.+++.+-++.+.+.|.-.|. .|+.++.|-.. + -++-||+.+|.++|
T Consensus 113 TlVDSLDTL~IMgl~~Ef~~a~~~V~~~l~f~~~--~~~~vsvFEtt-----------------I-R~LGGLLSAy~Ls~ 172 (522)
T PTZ00470 113 TIIDSLDTLKIMGLKKEYKEGRDWVANNLKQSKD--TGLGVSVFETT-----------------I-RVLGGLLSAYDLTG 172 (522)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCCC--CCCeeeeeeee-----------------h-hhHhHHHHHHHHcC
Confidence 4456666555554445555444443333322233 45666544211 1 14679999999999
Q ss_pred ChhHHHHHHHHHHHHHHHhhhh--hh--------ccchhhhcc---cccccccchHHHHHHHHHhcCCHHHHHHHHhcc
Q 043003 251 NGQALNITIWMADYFNTRVQNL--IA--------RSSLERHYQ---TLNDESGGMNDVLYKLYGITKDPKHLKLAELFD 316 (855)
Q Consensus 251 ~~kaL~ia~r~AD~~~~r~~~~--~~--------~~~~~~~~~---~l~~E~GGmneaL~~LY~~TGd~ryL~LA~~F~ 316 (855)
++.+|+.|+.+||-+..-|... ++ +......|. ..-.|.|.+.+-+..|.++|||++|.+.|++..
T Consensus 173 d~~lL~kA~dLgd~Ll~AFdTptgiP~~~vnl~~g~~~~~~~~~~~~~lAe~gSl~LEF~~LS~lTGd~kY~~~a~~i~ 251 (522)
T PTZ00470 173 DEMYLEKAREIADRLLPAFNEDTGFPASEINLATGRKSYPGWAGGCSILSEVGTLQLEFNYLSEITGDPKYAEYVDKVM 251 (522)
T ss_pred CHHHHHHHHHHHHHHHHhhcCCCCCCcceeecccCCCCCcccCCCccchhhhhhHHHHHHHHHHhhCCHHHHHHHHHHH
Confidence 9999999999999999887410 10 000111121 122467778888899999999999999998764
No 19
>cd04792 LanM-like LanM-like proteins. LanM is a bifunctional enzyme, involved in the synthesis of class II lantibiotics. It is responsible for both the dehydration and the cyclization of the precursor-peptide during lantibiotic synthesis. The C-terminal domain shows similarity to LanC, the cyclase component of the lan operon, but the N terminus seems to be unrelated to the dehydratase, LanB.
Probab=96.50 E-value=0.11 Score=64.95 Aligned_cols=214 Identities=15% Similarity=0.096 Sum_probs=124.6
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHHHHHHhhC-CCcccccCCchhhhhhhccccccccchhhHHHHHHHHHHHHHhCChh
Q 043003 175 ATAMAWASTRNETVKQKMDAVMSVLSECQKKI-GTGYLSAFPSEFFDRLENLVYVWAPYYTIHKIMAGLLDQYTLANNGQ 253 (855)
Q Consensus 175 A~A~~~a~t~D~~L~~k~d~~Vd~L~~~Q~~~-~DGYL~a~~~~~~~r~~~l~~~w~pyy~~HkI~aGLld~Y~~TG~~k 253 (855)
++..++..++|+.+++.+.++++.+.+..... ..+++++. +| +..+|+..|+.+++++
T Consensus 549 ~L~~l~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~D~~~G~-------------------aG--ii~~Ll~l~~~~~~~~ 607 (825)
T cd04792 549 ALTHLGKLLKDDRLLNLAKEILDLIDELIEKDEKLDFISGA-------------------AG--LILVLLSLYELFLSER 607 (825)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccCCCEeeec-------------------HH--HHHHHHHHHhccCChH
Confidence 34455566899999999999999887654310 11222211 11 3344678899999999
Q ss_pred HHHHHHHHHHHHHHHhhhhhhccchhhhccccccccc--chHHHHHHHHHhcCCHHHHHHHHhccc--cccccccccc--
Q 043003 254 ALNITIWMADYFNTRVQNLIARSSLERHYQTLNDESG--GMNDVLYKLYGITKDPKHLKLAELFDK--PCFLGLLAVK-- 327 (855)
Q Consensus 254 aL~ia~r~AD~~~~r~~~~~~~~~~~~~~~~l~~E~G--GmneaL~~LY~~TGd~ryL~LA~~F~~--~~~~~~la~~-- 327 (855)
.+++|.+.++++.+.....-.............=-+| |+..+|.++|+.|+|++|++.|+...+ ...+.+....
T Consensus 608 ~l~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~G~aHG~sGi~~aL~~l~~~~~d~~~~~~a~~~l~~~~~~~~~~~~~w~ 687 (825)
T cd04792 608 FLDLALKCGDHLLENASNEDGGIGPAEQPNLTGFAHGASGIAWALLRLYKVTGDSRYLKLAHKALKYERRLFSEEGWNWP 687 (825)
T ss_pred HHHHHHHHHHHHHHhhhhccCCcccccccccccccccHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHhcCHhhcCCC
Confidence 9999999999987653221000000000000001233 688999999999999999999987543 1111110000
Q ss_pred c--CC---CCCCcccCcchH-hHHHHHHHHH--hCChHHHHHHHHHHHHhcccCeEeecCCCCCCCCCCCccccccCCcC
Q 043003 328 A--DN---IAGLHANTHIPL-VCGVQNRYEL--TGDEQSMAMGTFFMDIINSSHSYATGGTSHQEFWTDPKRIATALSAE 399 (855)
Q Consensus 328 ~--d~---l~g~HanthiP~-~~G~a~~Y~~--TGD~~y~~aa~~fwd~V~~~~~Y~TGG~g~~E~f~~~~~l~~~l~~~ 399 (855)
. +. ..+.| ..|- .......++. .+|+.+.+.+...-+.+..+. +. ..
T Consensus 688 ~~~~~~~~~~WCh---G~~GI~lal~~~~~~~~~~d~~~~~~i~~~~~~~~~~~------------~~----------~~ 742 (825)
T cd04792 688 RKDGNSFSAAWCH---GAPGILLARLELLKFNDLDDEELKEEIEIALKTTLKEG------------FG----------NN 742 (825)
T ss_pred CcCcCCCCCcccC---CcHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHhc------------CC----------CC
Confidence 0 00 01111 1111 1334456777 678888777766655543210 11 11
Q ss_pred ccccchhhHHHHHHHHHHccCCcchHHHHHHHHHh
Q 043003 400 TEESCTTYNMLKVSRYLFKWTKQVTYADYYERALT 434 (855)
Q Consensus 400 ~~ETCat~nmlkl~~~Lf~~tgd~~YaD~~ERaLy 434 (855)
.+=.|...+.+.+...+.+.++|.+|.+.+++.+-
T Consensus 743 ~slCHG~~Gil~~ll~~~~~~~~~~~~~~a~~~~~ 777 (825)
T cd04792 743 HSLCHGDLGNLEILLYAAKAFGDEKLQELANSLAI 777 (825)
T ss_pred CeecCCCcchHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 33456667777788888888999988888876644
No 20
>PF01532 Glyco_hydro_47: Glycosyl hydrolase family 47; InterPro: IPR001382 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 47 GH47 from CAZY comprises enzymes with only one known activity; alpha-mannosidase (3.2.1.113 from EC). Alpha-mannosidase is involved in the maturation of Asn-linked oligo-saccharides []. The enzyme hydrolyses terminal 1,2-linked alpha-D-mannose residues in the oligo-mannose oligosaccharide man(9)(glcnac)(2) in a calcium-dependent manner. The mannose residues are trimmed away to produce, first, man(8)glcnac(2), then a man(5)(glcnac)(2) structure.; GO: 0004571 mannosyl-oligosaccharide 1,2-alpha-mannosidase activity, 0005509 calcium ion binding, 0016020 membrane; PDB: 2RI9_A 2RI8_B 1KRE_B 1KKT_A 1KRF_A 1NXC_A 1G6I_A 1DL2_A 1HCU_A 1FO2_A ....
Probab=96.33 E-value=0.025 Score=66.11 Aligned_cols=195 Identities=22% Similarity=0.236 Sum_probs=111.5
Q ss_pred HHHHHHHHHHHh--CChhHHHHHHHHHHHHHHHhhhh--hh--ccch----hhhcc---cccccccchHHHHHHHHHhcC
Q 043003 238 IMAGLLDQYTLA--NNGQALNITIWMADYFNTRVQNL--IA--RSSL----ERHYQ---TLNDESGGMNDVLYKLYGITK 304 (855)
Q Consensus 238 I~aGLld~Y~~T--G~~kaL~ia~r~AD~~~~r~~~~--~~--~~~~----~~~~~---~l~~E~GGmneaL~~LY~~TG 304 (855)
++-||+.+|.++ +++.+|+.|+.+||.+..-|... ++ .... ...+. ..-.|.|.+..-+.+|.++||
T Consensus 82 ~lGgLLSay~ls~~~d~~lL~kA~~lad~Ll~aF~t~~g~P~~~~n~~~~~~~~~~~~~~~la~~gs~~lEf~~LS~lTg 161 (452)
T PF01532_consen 82 VLGGLLSAYDLSGEGDPILLSKAVELADRLLPAFDTPTGIPYPRVNLRTGGKNRWPGGESSLAEAGSLQLEFTRLSQLTG 161 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGSSSSS---SEEETTTCEEETTCCGEEEHHHHCSSHHHHHHHHHHHS
T ss_pred hhhhhHHHHHHHhccchHHHHHHHHHHHHHHHhccCCCccccceeeecccCCCCCCCCcccccccccceechhHHHHHhh
Confidence 568999999999 99999999999999998877420 10 0110 00110 111356777788899999999
Q ss_pred CHHHHHHHHhccccc--------cccccccccCCCCCCcccCcchH-------hHHHHHHHHHhC--ChHHHHHHHHHHH
Q 043003 305 DPKHLKLAELFDKPC--------FLGLLAVKADNIAGLHANTHIPL-------VCGVQNRYELTG--DEQSMAMGTFFMD 367 (855)
Q Consensus 305 d~ryL~LA~~F~~~~--------~~~~la~~~d~l~g~HanthiP~-------~~G~a~~Y~~TG--D~~y~~aa~~fwd 367 (855)
|++|.+.|++..+.- +.+.+...-|...+.....++-+ ..-+.+.|.++| |+.|++.-....+
T Consensus 162 d~kY~~~a~~~~~~l~~~~~~~~~~gL~p~~id~~~g~~~~~~~~~Ga~~DS~YEYLlK~~lL~g~~d~~~~~~~~~a~~ 241 (452)
T PF01532_consen 162 DPKYFDAADRIYDALWRSQNRSKIPGLFPNFIDPSTGKWTSSSISLGAGGDSFYEYLLKMYLLLGGTDEQYRDMYDEAVD 241 (452)
T ss_dssp -THHHHHHHHHHHHHHCCCCCHSBTTB-BSEEETTTS-BSSTEE-SSTTTHHHHHHHHHHHHHTTTTTHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhhhccCCcccCcceecCCcCcccccccccCCCcchHHHhhhhhhhhcCccchHHHHHHHHHHH
Confidence 999999998764310 11101111111111111111111 134678899999 8888887777777
Q ss_pred HhcccCeEeecCCCCCC--CCCCCcc--ccc-cCCcCccccchhhHHHHHHHHHHccCCcchHHHHHHHHHhhh
Q 043003 368 IINSSHSYATGGTSHQE--FWTDPKR--IAT-ALSAETEESCTTYNMLKVSRYLFKWTKQVTYADYYERALTNG 436 (855)
Q Consensus 368 ~V~~~~~Y~TGG~g~~E--~f~~~~~--l~~-~l~~~~~ETCat~nmlkl~~~Lf~~tgd~~YaD~~ERaLyN~ 436 (855)
.+.+ |+.........+ .|-.... ... .......-+|-.-+|+.+..+++ ++.++.+..++.....
T Consensus 242 ~i~~-~Ll~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~hLsCF~pG~l~Lg~~~~---~~~~~~~~A~~l~~~C 311 (452)
T PF01532_consen 242 AIKK-HLLFRPSTPGDYDLLFLGEYSTGGGGRLSPKMDHLSCFLPGMLALGAKLF---NDEGDLELAEELTETC 311 (452)
T ss_dssp HHHH-HTEEEBTTTT--T-EEE-EEETTTTTEEESEEECGGGGHHHHHHHHHHTT---TCHHHHHHHHHHHHHH
T ss_pred HHHH-HhhccCCCCCccceeEeeeeecccCccccccccchhhcchhHHHHhhccc---CchhHHHHHHHHHHHH
Confidence 7653 433332221111 1111110 000 00245667899999999999988 4466666666554433
No 21
>cd04434 LanC_like LanC-like proteins. LanC is the cyclase enzyme of the lanthionine synthetase. Lanthionine is a lantibiotic, a unique class of peptide antibiotics. They are ribosomally synthesized as a precursor peptide and then post-translationally modified to contain thioether cross-links called lanthionines (Lans) or methyllanthionines (MeLans), in addition to 2,3-didehydroalanine (Dha) and (Z)-2,3-didehydrobutyrine (Dhb). These unusual amino acids are introduced by the dehydration of serine and threonine residues, followed by thioether formation via addition of cysteine thiols, catalysed by LanB and LanC or LanM. LanC, the cyclase component, is a zinc metalloprotein, whose bound metal has been proposed to activate the thiol substrate for nucleophilic addition. A related domain is also present in LanM and other pro- and eukaryotic proteins of unknown function.
Probab=96.13 E-value=0.41 Score=52.43 Aligned_cols=225 Identities=14% Similarity=0.043 Sum_probs=129.9
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHHHHHHhh----CCCcccccCCchhhhhhhccccccccchhhHHHHHHHHHHHHHh
Q 043003 174 SATAMAWASTRNETVKQKMDAVMSVLSECQKK----IGTGYLSAFPSEFFDRLENLVYVWAPYYTIHKIMAGLLDQYTLA 249 (855)
Q Consensus 174 sA~A~~~a~t~D~~L~~k~d~~Vd~L~~~Q~~----~~DGYL~a~~~~~~~r~~~l~~~w~pyy~~HkI~aGLld~Y~~T 249 (855)
-++..++..++|+++.+.++++++.+.+.-.. ...+++... +| +...|+..|+.+
T Consensus 57 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~G~-------------------aG--~~~~ll~~~~~~ 115 (343)
T cd04434 57 YALAALSKGLGDQELLKELLELLLLLVELILEDLKDLNYDLLSGL-------------------AG--LLLALLLLYKTF 115 (343)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhcccCCCCcceeech-------------------HH--HHHHHHHHHHhc
Confidence 34445555689999999999998887764320 011111111 11 344567788889
Q ss_pred CChhHHHHHHHHHHHHHHHhhhhhhccch---hhhccc-cccccc--chHHHHHHHHHhcCCHHHHHHHHhccc---ccc
Q 043003 250 NNGQALNITIWMADYFNTRVQNLIARSSL---ERHYQT-LNDESG--GMNDVLYKLYGITKDPKHLKLAELFDK---PCF 320 (855)
Q Consensus 250 G~~kaL~ia~r~AD~~~~r~~~~~~~~~~---~~~~~~-l~~E~G--GmneaL~~LY~~TGd~ryL~LA~~F~~---~~~ 320 (855)
+++..++.+.+.++++.+...+....... ...... ..--|| |+..+|.++|+.+.++.+.++++.... ..+
T Consensus 116 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~HG~~Gi~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (343)
T cd04434 116 GEEIFLELIRKILDYLLELGKNGDGKIRWPMYFPEGRVNLGLAHGLAGILLALLLLYKKTVDKSLEALIKALLKYERRLQ 195 (343)
T ss_pred CCcCHHHHHHHHHHHHHHhhhhccCCCceeeeccCCccccchhhhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHcc
Confidence 99999999999999998765431110000 000000 001223 688999999999988888888765432 111
Q ss_pred cccc-------ccccCCCCCCcccCcchHhHHHHHHHHHhCChHHHHHHHHHHHHhcccCeEeecCCCCCCCCCCCcccc
Q 043003 321 LGLL-------AVKADNIAGLHANTHIPLVCGVQNRYELTGDEQSMAMGTFFMDIINSSHSYATGGTSHQEFWTDPKRIA 393 (855)
Q Consensus 321 ~~~l-------a~~~d~l~g~HanthiP~~~G~a~~Y~~TGD~~y~~aa~~fwd~V~~~~~Y~TGG~g~~E~f~~~~~l~ 393 (855)
.+.- .........-..+...=+.......|+.++|+.+.+.++...+.+.++... +
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~wChG~~Gi~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~--------- 258 (343)
T cd04434 196 DDSGGFWWPSRSNGGNRFLVAWCHGAPGILLALLLAYKALGDDKYDEAAEKALELAWKRGLL--------E--------- 258 (343)
T ss_pred CCCCCCCCCCCCCCCccccceecCCChhHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHhhhc--------c---------
Confidence 0100 000000000001111111234456799999999988887766665532110 0
Q ss_pred ccCCcCccccchhhHHHHHHHHHHccCCcchHHHHHHHHHhhhhccc
Q 043003 394 TALSAETEESCTTYNMLKVSRYLFKWTKQVTYADYYERALTNGVLGI 440 (855)
Q Consensus 394 ~~l~~~~~ETCat~nmlkl~~~Lf~~tgd~~YaD~~ERaLyN~iLa~ 440 (855)
....+=.|...+.+....+|...+++.+|.+..++.. +.++..
T Consensus 259 ---~~~~~lChG~~G~~~~ll~l~~~~~~~~~~~~a~~~~-~~~~~~ 301 (343)
T cd04434 259 ---LKNPGLCHGIAGNLLILLLLYKLTGDLKFLARALALA-LLLISH 301 (343)
T ss_pred ---CCCCCcCcCccchHHHHHHHHHHhCCHHHHHHHHHHH-HHHHHH
Confidence 1234445667778888888999999999888776554 455543
No 22
>cd04794 euk_LANCL eukaryotic Lanthionine synthetase C-like protein. This family contains the lanthionine synthetase C-like proteins 1 and 2 which are related to the bacterial lanthionine synthetase components C (LanC). LANCL1 and LANCL2 (testes-specific adriamycin sensitivity protein) are thought to be peptide-modifying enzyme components in eukaryotic cells. Both proteins are produced in large quantities in the brain and testes and may have role in the immune surveillance of these organs.
Probab=95.95 E-value=0.21 Score=56.01 Aligned_cols=191 Identities=15% Similarity=0.090 Sum_probs=110.1
Q ss_pred hhHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHHhhCCCcccccCCchhhhhhhccccccccchhhHH-HHHHHHHHH
Q 043003 169 LGHYLSATAMAWASTRN-ETVKQKMDAVMSVLSECQKKIGTGYLSAFPSEFFDRLENLVYVWAPYYTIHK-IMAGLLDQY 246 (855)
Q Consensus 169 ~Gh~LsA~A~~~a~t~D-~~L~~k~d~~Vd~L~~~Q~~~~DGYL~a~~~~~~~r~~~l~~~w~pyy~~Hk-I~aGLld~Y 246 (855)
..=+|.++..++..+++ +.+++.++.+++.+.+.-+...+......+. .+ .|.... ..-++-|=- |..+|+..+
T Consensus 103 ~aG~l~~Ll~l~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~-~~-~~~~~~--~~G~aHG~aGI~~~L~~~~ 178 (343)
T cd04794 103 RAGYLYALLFLNKKFGFKKIPSSLIKSICDAILESGRTGAAKYRAPCPL-MY-EWHGKE--YLGAAHGLAGILYILLQTP 178 (343)
T ss_pred HHHHHHHHHHHHHHcCcCCCCHHHHHHHHHHHHHHHHHhhhccCCCCCc-cc-cccCce--ecchhhhHHHHHHHHHhhh
Confidence 34567777778877773 4567788888877665422112222111110 00 111100 001211111 556678888
Q ss_pred HHhCChhHHHHHHHHHHHHHHHhhhhhhccch--h-------hhcccccccccchHHHHHHHHHhcCCHHHHHHHHhccc
Q 043003 247 TLANNGQALNITIWMADYFNTRVQNLIARSSL--E-------RHYQTLNDESGGMNDVLYKLYGITKDPKHLKLAELFDK 317 (855)
Q Consensus 247 ~~TG~~kaL~ia~r~AD~~~~r~~~~~~~~~~--~-------~~~~~l~~E~GGmneaL~~LY~~TGd~ryL~LA~~F~~ 317 (855)
..+++++.++.+.+..+|+.+...+. ..++. . ..|. |... |+..++..+|+.++|++|++.|+.-.+
T Consensus 179 ~~~~~~~~~~~i~~~i~~~~~~~~~~-g~w~~~~~~~~~~~~~~wC--hG~~-Gi~~~l~~~~~~~~~~~~~~~~~~~~~ 254 (343)
T cd04794 179 LFLLKPSLAPLIKRSLDYLLSLQFPS-GNFPSSLGNRKRDRLVQWC--HGAP-GIVYLLAKAYLVFKEEQYLEAAIKCGE 254 (343)
T ss_pred hhcCCccHHHHHHHHHHHHHHhhccC-CCCCCccCCCCCCcccccc--CCCc-hHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 88999999999999999998653210 01110 0 0121 1111 688999999999999999999877543
Q ss_pred cccc-cccccccCCCCCCcccCcchHhHHHHHHHHHhCChHHHHHHHHHHHHhccc
Q 043003 318 PCFL-GLLAVKADNIAGLHANTHIPLVCGVQNRYELTGDEQSMAMGTFFMDIINSS 372 (855)
Q Consensus 318 ~~~~-~~la~~~d~l~g~HanthiP~~~G~a~~Y~~TGD~~y~~aa~~fwd~V~~~ 372 (855)
..+. +.+. ....-.|-... +..++.++|+.|+|++|++.|..+.+.+.++
T Consensus 255 ~~~~~g~~~---~~~~lCHG~~G--~~~~lL~~~~~~~~~~~~~~a~~~~~~~~~~ 305 (343)
T cd04794 255 LIWKRGLLK---KGPGLCHGIAG--NAYAFLLLYRLTGDLKYLYRACKFAEFLINY 305 (343)
T ss_pred HHHHhCCcc---CCCccccCccc--hHHHHHHHHHHhCcHHHHHHHHHHHHHHhcc
Confidence 2110 0000 00111232211 2356778899999999999999999988754
No 23
>COG4403 LcnDR2 Lantibiotic modifying enzyme [Defense mechanisms]
Probab=95.74 E-value=0.07 Score=65.26 Aligned_cols=119 Identities=18% Similarity=0.248 Sum_probs=88.0
Q ss_pred hHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhCC-CcccccCCchhhhhhhccccccccchhhHHHHHHHHHHHHH
Q 043003 170 GHYLSATAMAWASTRNETVKQKMDAVMSVLSECQKKIG-TGYLSAFPSEFFDRLENLVYVWAPYYTIHKIMAGLLDQYTL 248 (855)
Q Consensus 170 Gh~LsA~A~~~a~t~D~~L~~k~d~~Vd~L~~~Q~~~~-DGYL~a~~~~~~~r~~~l~~~w~pyy~~HkI~aGLld~Y~~ 248 (855)
+-++=|+...+..+.|..+.+.+...|..|..+-++.. -+|+++-- | +..-|+..|+.
T Consensus 699 ~g~~yal~~I~~~~~~~~l~~~~~~~i~~le~~v~~~~~~d~i~Gl~-------------------g--~i~~L~~iYk~ 757 (963)
T COG4403 699 SGYFYALWKIYSVTRDNYLIQSAENSIRHLEILVQKSKDPDFINGLA-------------------G--VICVLVSIYKL 757 (963)
T ss_pred chhhhhhHHHHHhcccHHHHHHHHHHHHHHHHHHhhccCcchhhccH-------------------H--HHHHHHHHHhh
Confidence 56777888999999999999999999999888765322 24444321 1 22337899999
Q ss_pred hCChhHHHHHHHHHHHHHHHhhhhhhccchhhhcccc-ccccc--chHHHHHHHHHhcCCHHHHHHHHhc
Q 043003 249 ANNGQALNITIWMADYFNTRVQNLIARSSLERHYQTL-NDESG--GMNDVLYKLYGITKDPKHLKLAELF 315 (855)
Q Consensus 249 TG~~kaL~ia~r~AD~~~~r~~~~~~~~~~~~~~~~l-~~E~G--GmneaL~~LY~~TGd~ryL~LA~~F 315 (855)
+..++.|++|+.+++++++..... ++.- .++ .--|| |+..+|..||+.|||+++++.++..
T Consensus 758 ~~epk~l~~ais~~~~l~~~~v~~-----d~s~-~~l~gfshg~sgi~~tL~~ly~~T~e~~l~~~i~e~ 821 (963)
T COG4403 758 TDEPKFLELAISLGRILMEKIVGN-----DSSE-TVLLGFSHGASGIILTLLKLYEATGEESLLKKIKEL 821 (963)
T ss_pred ccchHHHHHHHHHHHHHHHHhhcc-----cccc-ceecccccchHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 999999999999999998754321 1111 122 22344 7889999999999999999999764
No 24
>COG4225 Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins [General function prediction only]
Probab=95.53 E-value=0.04 Score=61.05 Aligned_cols=117 Identities=15% Similarity=0.093 Sum_probs=70.8
Q ss_pred HHHHHHHHHHhCChhHHHHHHHHHHHHHHHhhhhhhccchhhhcccccccccchHHHHHHHHHhcCCHHHHHHHHhcccc
Q 043003 239 MAGLLDQYTLANNGQALNITIWMADYFNTRVQNLIARSSLERHYQTLNDESGGMNDVLYKLYGITKDPKHLKLAELFDKP 318 (855)
Q Consensus 239 ~aGLld~Y~~TG~~kaL~ia~r~AD~~~~r~~~~~~~~~~~~~~~~l~~E~GGmneaL~~LY~~TGd~ryL~LA~~F~~~ 318 (855)
+.|+..+|++||+++.|+.+++.+|+...+=+ ++...+.- +. +-..|+-||+.|||++||++|....+.
T Consensus 42 lyGv~~~~eAT~d~~yl~~l~~~~d~~i~~~g--~~~~~id~---i~------~g~~L~~L~e~T~~~~Yl~~a~~~a~~ 110 (357)
T COG4225 42 LYGVARAYEATGDAEYLDYLKTWFDEQIDEGG--LPPRNIDH---IA------AGLTLLPLYEQTGDPRYLEAAIKLASW 110 (357)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHhhhccCC--CCccchhh---hc------cCceeeehhhhhCCHHHHHHHHHHHHH
Confidence 45778899999999999999999998765421 11111110 00 114788899999999999999876431
Q ss_pred ccccccccccCCCCC-CcccC---cchH---hHH---HHHHHHHhCChHHH-HHHHHHHHHhc
Q 043003 319 CFLGLLAVKADNIAG-LHANT---HIPL---VCG---VQNRYELTGDEQSM-AMGTFFMDIIN 370 (855)
Q Consensus 319 ~~~~~la~~~d~l~g-~Hant---hiP~---~~G---~a~~Y~~TGD~~y~-~aa~~fwd~V~ 370 (855)
-.-.+ +-.-.+ .|-+- ++.. .+| .++.-.++|+++|. ++...||..+.
T Consensus 111 l~~~~----Rt~eG~f~H~~~~p~Q~W~DtL~Ma~~F~ak~g~~~~~~e~~d~~~~QF~~~~~ 169 (357)
T COG4225 111 LVHEP----RTKEGGFQHKVKYPHQMWLDTLYMAGLFLAKYGQVTGRPEYFDEALYQFSLHEK 169 (357)
T ss_pred HhhCc----ccCCCccccccCchhHhhhcchhhhhHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 11011 000011 12111 1111 122 35667999999996 56778887753
No 25
>PF06662 C5-epim_C: D-glucuronyl C5-epimerase C-terminus; InterPro: IPR010598 This entry consists of known or predicted D-glucuronyl C5-epimerases which share a common C-terminal region. Glucuronyl C5-epimerases catalyse the conversion of D-glucuronic acid (GlcUA) to L-iduronic acid (IdceA) units during the biosynthesis of glycosaminoglycans [].; GO: 0016857 racemase and epimerase activity, acting on carbohydrates and derivatives, 0006024 glycosaminoglycan biosynthetic process, 0016021 integral to membrane
Probab=95.41 E-value=0.14 Score=53.14 Aligned_cols=147 Identities=18% Similarity=0.209 Sum_probs=95.0
Q ss_pred CCcccCCcccccchhhHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhCCCcccccCCch--hhhhhhccccccccc
Q 043003 155 GGWEDQKMELRGHFLGHYLSATAMAWASTRNETVKQKMDAVMSVLSECQKKIGTGYLSAFPSE--FFDRLENLVYVWAPY 232 (855)
Q Consensus 155 gGWe~~dsdlrGH~~Gh~LsA~A~~~a~t~D~~L~~k~d~~Vd~L~~~Q~~~~DGYL~a~~~~--~~~r~~~l~~~w~py 232 (855)
.||.+.=++ |+-||.++.+|..|+|++..+.+++.++-+..--+ ..|-+..+... .++++......+++
T Consensus 24 ~gW~SamaQ------G~a~s~l~RAy~~t~d~~Yl~aA~~al~~f~~~~~--~GG~~~~~~~~~~wyeEYp~~p~s~VL- 94 (189)
T PF06662_consen 24 PGWYSAMAQ------GQAISVLARAYQLTGDEKYLDAAKKALNSFKVPVE--EGGVLATFKNKYPWYEEYPTTPPSYVL- 94 (189)
T ss_pred CCcHhHHHH------HHHHHHHHHHHHhHCCHHHHHHHHHHHHHhcChHh--hCCeeEEecCCcEeEeecCCCCCCEEe-
Confidence 478664444 99999999999999999999999999988766555 45655443321 12222222222322
Q ss_pred hhhHH-HHHHHHHHHHHhCChhHHHHHHHHHHHHHHHhhhhhhccchhhhcc--cc-cc------------cccchHHHH
Q 043003 233 YTIHK-IMAGLLDQYTLANNGQALNITIWMADYFNTRVQNLIARSSLERHYQ--TL-ND------------ESGGMNDVL 296 (855)
Q Consensus 233 y~~Hk-I~aGLld~Y~~TG~~kaL~ia~r~AD~~~~r~~~~~~~~~~~~~~~--~l-~~------------E~GGmneaL 296 (855)
+||. -+-||-|++..+++++|.++..+-.+=+.+.+.. +.. ..|. .+ |- -+.-...-|
T Consensus 95 -NGfiysL~GLyd~~~~~~~~~A~~lf~~Gl~sLk~~Lp~----yD~-G~wS~Ydl~h~~~~~~~~~a~~~YH~lHi~qL 168 (189)
T PF06662_consen 95 -NGFIYSLIGLYDYYRLTGDEEAKELFDKGLKSLKKMLPL----YDT-GSWSRYDLRHFTLGNAPNIARWDYHRLHIQQL 168 (189)
T ss_pred -ehHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHh----hhc-CCCchhhccccccccCcCcCcchHHHHHHHHH
Confidence 2443 3468999999999999988877777666655432 111 1111 11 00 011134577
Q ss_pred HHHHHhcCCHHHHHHHHhcc
Q 043003 297 YKLYGITKDPKHLKLAELFD 316 (855)
Q Consensus 297 ~~LY~~TGd~ryL~LA~~F~ 316 (855)
..||.+|||+.+.+.|+++.
T Consensus 169 ~~L~~it~d~~f~~~a~rW~ 188 (189)
T PF06662_consen 169 KWLYSITGDPIFKEYAERWK 188 (189)
T ss_pred HHHHHhcCCHHHHHHHHHhc
Confidence 88999999999999999864
No 26
>PF06662 C5-epim_C: D-glucuronyl C5-epimerase C-terminus; InterPro: IPR010598 This entry consists of known or predicted D-glucuronyl C5-epimerases which share a common C-terminal region. Glucuronyl C5-epimerases catalyse the conversion of D-glucuronic acid (GlcUA) to L-iduronic acid (IdceA) units during the biosynthesis of glycosaminoglycans [].; GO: 0016857 racemase and epimerase activity, acting on carbohydrates and derivatives, 0006024 glycosaminoglycan biosynthetic process, 0016021 integral to membrane
Probab=95.17 E-value=0.081 Score=54.79 Aligned_cols=132 Identities=20% Similarity=0.202 Sum_probs=78.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcccccccccccc-c-----cC---------CCCCCc-ccCcchHhHHHHHHHHHhCCh
Q 043003 293 NDVLYKLYGITKDPKHLKLAELFDKPCFLGLLAV-K-----AD---------NIAGLH-ANTHIPLVCGVQNRYELTGDE 356 (855)
Q Consensus 293 neaL~~LY~~TGd~ryL~LA~~F~~~~~~~~la~-~-----~d---------~l~g~H-anthiP~~~G~a~~Y~~TGD~ 356 (855)
..+|+|+|++|||++||+.|++..+.-. .+..+ | .+ ..+..| -|.+|=.++|+-+.+..|+++
T Consensus 36 ~s~l~RAy~~t~d~~Yl~aA~~al~~f~-~~~~~GG~~~~~~~~~~wyeEYp~~p~s~VLNGfiysL~GLyd~~~~~~~~ 114 (189)
T PF06662_consen 36 ISVLARAYQLTGDEKYLDAAKKALNSFK-VPVEEGGVLATFKNKYPWYEEYPTTPPSYVLNGFIYSLIGLYDYYRLTGDE 114 (189)
T ss_pred HHHHHHHHHhHCCHHHHHHHHHHHHHhc-ChHhhCCeeEEecCCcEeEeecCCCCCCEEeehHHHHHHHHHHHHHhcCCH
Confidence 4588999999999999999998543211 11100 1 00 001111 255666668888899999998
Q ss_pred HHHHHHHHHHHHhccc-CeEeecCCCCCC--CCCCCccccccCCcCccccchhhHHHHHHHHHHccCCcchHHHHHHH
Q 043003 357 QSMAMGTFFMDIINSS-HSYATGGTSHQE--FWTDPKRIATALSAETEESCTTYNMLKVSRYLFKWTKQVTYADYYER 431 (855)
Q Consensus 357 ~y~~aa~~fwd~V~~~-~~Y~TGG~g~~E--~f~~~~~l~~~l~~~~~ETCat~nmlkl~~~Lf~~tgd~~YaD~~ER 431 (855)
..++.-+...+.+... ..|-||+.+... |+.. ...|+.-...|. .. .+.....|..+|+|+.+.+++||
T Consensus 115 ~A~~lf~~Gl~sLk~~Lp~yD~G~wS~Ydl~h~~~-~~~~~~a~~~YH--~l---Hi~qL~~L~~it~d~~f~~~a~r 186 (189)
T PF06662_consen 115 EAKELFDKGLKSLKKMLPLYDTGSWSRYDLRHFTL-GNAPNIARWDYH--RL---HIQQLKWLYSITGDPIFKEYAER 186 (189)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCchhhcccccc-ccCcCcCcchHH--HH---HHHHHHHHHHhcCCHHHHHHHHH
Confidence 7776666555554321 367777766432 2321 111220001121 12 24556678888999999999997
No 27
>cd04792 LanM-like LanM-like proteins. LanM is a bifunctional enzyme, involved in the synthesis of class II lantibiotics. It is responsible for both the dehydration and the cyclization of the precursor-peptide during lantibiotic synthesis. The C-terminal domain shows similarity to LanC, the cyclase component of the lan operon, but the N terminus seems to be unrelated to the dehydratase, LanB.
Probab=95.13 E-value=0.77 Score=57.63 Aligned_cols=221 Identities=17% Similarity=0.228 Sum_probs=123.8
Q ss_pred hhHHHHHHHHHHH----hCCChHHHHHHHHHHHHHHHHHhhCC-----CcccccCCchhhhhhhccccccccchhhHHHH
Q 043003 169 LGHYLSATAMAWA----STRNETVKQKMDAVMSVLSECQKKIG-----TGYLSAFPSEFFDRLENLVYVWAPYYTIHKIM 239 (855)
Q Consensus 169 ~Gh~LsA~A~~~a----~t~D~~L~~k~d~~Vd~L~~~Q~~~~-----DGYL~a~~~~~~~r~~~l~~~w~pyy~~HkI~ 239 (855)
+++=+.+++++++ .|+|+.+++.+.++++.+.+.-+..+ .|.+++. -=|.
T Consensus 489 LY~G~aGIal~l~~l~~~t~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~gl~~G~---------------------aGi~ 547 (825)
T cd04792 489 LYDGSAGIALFLAYLGQLTGDERYTRLARKILDSLVKSLSELKTDDTGIGAFSGL---------------------GGIL 547 (825)
T ss_pred ccCChHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHhcccccccCceeEech---------------------hHHH
Confidence 3666677666554 57899999888888887766533101 1111110 0133
Q ss_pred HHHHHHHHHhCChhHHHHHHHHHHHHHHHhhhhhhccchhhhcccccccccchHHHHHHHHHhcCCHHHHHHHHhccccc
Q 043003 240 AGLLDQYTLANNGQALNITIWMADYFNTRVQNLIARSSLERHYQTLNDESGGMNDVLYKLYGITKDPKHLKLAELFDKPC 319 (855)
Q Consensus 240 aGLld~Y~~TG~~kaL~ia~r~AD~~~~r~~~~~~~~~~~~~~~~l~~E~GGmneaL~~LY~~TGd~ryL~LA~~F~~~~ 319 (855)
..|...|..+++++.++.+.+.++.+.+.... ......+++- .|+..+|..+|+.|++++++++|+...+.-
T Consensus 548 ~~L~~l~~~~~~~~~~~~a~~~~~~l~~~~~~-------~~~~D~~~G~-aGii~~Ll~l~~~~~~~~~l~~a~~~~~~l 619 (825)
T cd04792 548 YALTHLGKLLKDDRLLNLAKEILDLIDELIEK-------DEKLDFISGA-AGLILVLLSLYELFLSERFLDLALKCGDHL 619 (825)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcc-------ccCCCEeeec-HHHHHHHHHHHhccCChHHHHHHHHHHHHH
Confidence 34556788899999999999988877553211 0111122222 257789999999999999999998764421
Q ss_pred cccccccccCC---------C-CCCcccCcch-HhHHHHHHHHHhCChHHHHHHHHHHHHhcccCeEeecCCCCCCCCCC
Q 043003 320 FLGLLAVKADN---------I-AGLHANTHIP-LVCGVQNRYELTGDEQSMAMGTFFMDIINSSHSYATGGTSHQEFWTD 388 (855)
Q Consensus 320 ~~~~la~~~d~---------l-~g~HanthiP-~~~G~a~~Y~~TGD~~y~~aa~~fwd~V~~~~~Y~TGG~g~~E~f~~ 388 (855)
+ .. ....+. . ...|- .+ ++..++.+|+.|+|+.|+++++..++.... + +..++ ..|..
T Consensus 620 ~-~~-~~~~~~~~~~~~~~~~~G~aHG---~sGi~~aL~~l~~~~~d~~~~~~a~~~l~~~~~-~-~~~~~----~~w~~ 688 (825)
T cd04792 620 L-EN-ASNEDGGIGPAEQPNLTGFAHG---ASGIAWALLRLYKVTGDSRYLKLAHKALKYERR-L-FSEEG----WNWPR 688 (825)
T ss_pred H-Hh-hhhccCCccccccccccccccc---HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHH-h-cCHhh----cCCCC
Confidence 1 00 000000 0 00111 11 123346779999999999999988875432 1 21111 11211
Q ss_pred CccccccCCcCccccchh-hHHHHHHHHHHcc--CCcchHHHHHHHHHh
Q 043003 389 PKRIATALSAETEESCTT-YNMLKVSRYLFKW--TKQVTYADYYERALT 434 (855)
Q Consensus 389 ~~~l~~~l~~~~~ETCat-~nmlkl~~~Lf~~--tgd~~YaD~~ERaLy 434 (855)
+. . .....--|-- .+.+..-..+.+. ..|..+.+.+++++-
T Consensus 689 ~~--~---~~~~~~WChG~~GI~lal~~~~~~~~~~d~~~~~~i~~~~~ 732 (825)
T cd04792 689 KD--G---NSFSAAWCHGAPGILLARLELLKFNDLDDEELKEEIEIALK 732 (825)
T ss_pred cC--c---CCCCCcccCCcHHHHHHHHHHHhcCccchHHHHHHHHHHHH
Confidence 10 0 0112234443 3444444455566 577888888887754
No 28
>PF07470 Glyco_hydro_88: Glycosyl Hydrolase Family 88; InterPro: IPR010905 Unsaturated glucuronyl hydrolase catalyses the hydrolytic release of unsaturated glucuronic acids from oligosaccharides produced by the reactions of polysaccharide lyases [].; PDB: 3K11_A 2GH4_A 2D8L_A 1NC5_A 3PMM_A 2FV1_B 2AHF_A 2FV0_A 2AHG_B 2D5J_A ....
Probab=94.75 E-value=0.12 Score=57.65 Aligned_cols=130 Identities=19% Similarity=0.109 Sum_probs=74.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhccccccccccccccCCCCCCcccCcchHhHHHHHHHHHhCChHHHHHHHHHHH-Hhc
Q 043003 292 MNDVLYKLYGITKDPKHLKLAELFDKPCFLGLLAVKADNIAGLHANTHIPLVCGVQNRYELTGDEQSMAMGTFFMD-IIN 370 (855)
Q Consensus 292 mneaL~~LY~~TGd~ryL~LA~~F~~~~~~~~la~~~d~l~g~HanthiP~~~G~a~~Y~~TGD~~y~~aa~~fwd-~V~ 370 (855)
+-.+|..+|+.|||++|++.|+.+.+..+-.. .. ..+.+++.+ ...+...|+.|||++|++++....+ .+.
T Consensus 30 ~~~gl~~~~~~tgd~~~~~~a~~~~~~~~~~~---~~----~~~~d~~~~-g~~~~~~y~~t~d~~y~~~~~~~a~~~l~ 101 (336)
T PF07470_consen 30 FWYGLLEAYEYTGDERYLDYAERWADRFIEED---GS----DYNLDDHDI-GFLLLDLYERTGDEKYKDAAIQAADWLLA 101 (336)
T ss_dssp HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH---HT----TTSCCGTTH-HHHHHHHHHHH-THHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhcc---CC----ccCCchhhh-HHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 55688899999999999999998755322110 00 122333333 3444678999999999999999999 554
Q ss_pred ccCeEeecCCCCCCCCCCCccccccCCcCccccchhhHH---HHHHHHHHccCCcchHHHHHHHHHhhhhcccCCC
Q 043003 371 SSHSYATGGTSHQEFWTDPKRIATALSAETEESCTTYNM---LKVSRYLFKWTKQVTYADYYERALTNGVLGIQRG 443 (855)
Q Consensus 371 ~~~~Y~TGG~g~~E~f~~~~~l~~~l~~~~~ETCat~nm---lkl~~~Lf~~tgd~~YaD~~ERaLyN~iLa~q~~ 443 (855)
+..--..||....+ .....|-.=+| +-+.-++...+||.+|.|.+.+-+-...--..++
T Consensus 102 ~~~~~~~G~~~~~~--------------~~~~~~wiD~~~M~~p~l~~~~~~tgd~~~~~~a~~q~~~~~~~~~d~ 163 (336)
T PF07470_consen 102 RRPRTSDGGFWHNR--------------PYPNQVWIDGMYMNLPFLAWAGKLTGDPKYLDEAVRQFRLTRKYLYDP 163 (336)
T ss_dssp TSCBECTGCBECTT--------------TSTTEEETTHHHHHHHHHHHHHHHHTGHHHHHHHHHHHHHHHHHHB-T
T ss_pred hCCCCCCCccccCC--------------CCCCceeeccccccHHHHHHHHHHHCCcHHHHHHHHHHHHHHHhccCC
Confidence 32222355554311 11111111112 2233344678999999998877655544434444
No 29
>PF00759 Glyco_hydro_9: Glycosyl hydrolase family 9; InterPro: IPR001701 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 9 GH9 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family E. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1RQ5_A 1CLC_A 3H7L_B 1K72_B 1G87_B 1GA2_A 1KFG_A 1UT9_A 2YIK_A 3RX5_A ....
Probab=94.65 E-value=0.63 Score=54.02 Aligned_cols=127 Identities=14% Similarity=0.058 Sum_probs=70.5
Q ss_pred ChHHHHHHHHHHHHHHHHHhhCCCcccccCC-c--hhhhhhhc------cccccccchh-------hHHHHHHHHHHHHH
Q 043003 185 NETVKQKMDAVMSVLSECQKKIGTGYLSAFP-S--EFFDRLEN------LVYVWAPYYT-------IHKIMAGLLDQYTL 248 (855)
Q Consensus 185 D~~L~~k~d~~Vd~L~~~Q~~~~DGYL~a~~-~--~~~~r~~~------l~~~w~pyy~-------~HkI~aGLld~Y~~ 248 (855)
-+.+++.+..-+|.|.+||. ++|.+-..- . ...+.|.. .+... .+.. .-.+-|+|..++++
T Consensus 93 ~~dllde~kwg~D~llkm~~--~~~~~~~qvgdg~~~h~~w~~~~~~~~~~~~~-~~~~~~~~t~~~~~~AAalA~As~v 169 (444)
T PF00759_consen 93 IPDLLDEAKWGLDWLLKMQD--SDGTFYAQVGDGGVDHKVWGRPEIMPDDDPSY-RYDAPNPGTDATAEFAAALAAASRV 169 (444)
T ss_dssp HHHHHHHHHHHHHHHHHTBS--CTTEEEEEESTHHHHHTEESTGGGTGSGESEE-EEETTB-EHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccC--CCCceeeeccCccchhhcccCCCCCCCCCCcc-eEecCCCchHHHHHHHHHHHHHHHh
Confidence 37899999999999999999 544432211 0 00011111 01100 0111 11233555566666
Q ss_pred hCC------hhHHHHHHHHHHHHHHHhhhhhhccch--hhhcc--cccccccchHHHHHHHHHhcCCHHHHHHHHhccc
Q 043003 249 ANN------GQALNITIWMADYFNTRVQNLIARSSL--ERHYQ--TLNDESGGMNDVLYKLYGITKDPKHLKLAELFDK 317 (855)
Q Consensus 249 TG~------~kaL~ia~r~AD~~~~r~~~~~~~~~~--~~~~~--~l~~E~GGmneaL~~LY~~TGd~ryL~LA~~F~~ 317 (855)
-.+ ++.|+.|+++-+|..+........... ..... ....| +..+-++||+.|||++|++.|+.+..
T Consensus 170 ~k~~d~~~A~~~L~~A~~~~~~a~~~~~~~~~~~~~~~~~~Y~~~~~~De---~~wAA~~Ly~aTg~~~Y~~~a~~~~~ 245 (444)
T PF00759_consen 170 FKDFDPAYAAQCLKAAKEAYAFAKKNPGVYSDNPQPNGGGFYNSSGYEDE---LAWAAAELYRATGDESYLDYAKEYYD 245 (444)
T ss_dssp HTTTTHHHHHHHHHHHHHHHHHHHHSTTHGGGTSTCTTTTTSHCS-SHHH---HHHHHHHHHHHHT-HHHHHHHHHHCC
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHhCCCcccCCcccccCCcccCCCcccH---HHHHHHHHHHhcCcHHHHHHHHHhHH
Confidence 555 579999999999988754332111100 00000 00111 34577999999999999999998865
No 30
>COG4225 Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins [General function prediction only]
Probab=94.37 E-value=0.23 Score=55.23 Aligned_cols=233 Identities=16% Similarity=0.154 Sum_probs=127.8
Q ss_pred hHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhCCCcccccCCchhhhhhhccccccccchhhHHH-HHHHHHHHHH
Q 043003 170 GHYLSATAMAWASTRNETVKQKMDAVMSVLSECQKKIGTGYLSAFPSEFFDRLENLVYVWAPYYTIHKI-MAGLLDQYTL 248 (855)
Q Consensus 170 Gh~LsA~A~~~a~t~D~~L~~k~d~~Vd~L~~~Q~~~~DGYL~a~~~~~~~r~~~l~~~w~pyy~~HkI-~aGLld~Y~~ 248 (855)
|=.|.+++.+|..|+|++..+.+..++|.... .+| .+. ++.-|.. ..-|+.-|+.
T Consensus 39 GV~lyGv~~~~eAT~d~~yl~~l~~~~d~~i~-----~~g----~~~---------------~~id~i~~g~~L~~L~e~ 94 (357)
T COG4225 39 GVFLYGVARAYEATGDAEYLDYLKTWFDEQID-----EGG----LPP---------------RNIDHIAAGLTLLPLYEQ 94 (357)
T ss_pred cchHHHHHHHHHHcCcHHHHHHHHHHHHhhhc-----cCC----CCc---------------cchhhhccCceeeehhhh
Confidence 78899999999999999999999999988663 455 221 1111110 0125678999
Q ss_pred hCChhHHHHHHHHHHHHHHHhhhhhhc------cchhhhcccccccccchH-HHHHHHHHhcCCHHHHHHHHh-cc-cc-
Q 043003 249 ANNGQALNITIWMADYFNTRVQNLIAR------SSLERHYQTLNDESGGMN-DVLYKLYGITKDPKHLKLAEL-FD-KP- 318 (855)
Q Consensus 249 TG~~kaL~ia~r~AD~~~~r~~~~~~~------~~~~~~~~~l~~E~GGmn-eaL~~LY~~TGd~ryL~LA~~-F~-~~- 318 (855)
||++++|+.++++++|+..... .-++ ...+|+|... -+ |. .-++++-+.+|+++|++-|-+ |. +.
T Consensus 95 T~~~~Yl~~a~~~a~~l~~~~R-t~eG~f~H~~~~p~Q~W~Dt--L~--Ma~~F~ak~g~~~~~~e~~d~~~~QF~~~~~ 169 (357)
T COG4225 95 TGDPRYLEAAIKLASWLVHEPR-TKEGGFQHKVKYPHQMWLDT--LY--MAGLFLAKYGQVTGRPEYFDEALYQFSLHEK 169 (357)
T ss_pred hCCHHHHHHHHHHHHHHhhCcc-cCCCccccccCchhHhhhcc--hh--hhhHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999987651 1111 1234566321 10 21 356788889999999988743 42 21
Q ss_pred ccccccc----cccCC---CCCCcccCcchHh---------HHHHHHHHHhCC-----hHHHHHHHHHHHHhcccCeEee
Q 043003 319 CFLGLLA----VKADN---IAGLHANTHIPLV---------CGVQNRYELTGD-----EQSMAMGTFFMDIINSSHSYAT 377 (855)
Q Consensus 319 ~~~~~la----~~~d~---l~g~HanthiP~~---------~G~a~~Y~~TGD-----~~y~~aa~~fwd~V~~~~~Y~T 377 (855)
..-||.. -+-|. .++.|..+..|.+ +.+++.-++--+ ..+.+..+...+.+.+.+. ..
T Consensus 170 ~l~Dp~TGL~YH~wd~~~~~~w~~~~sG~~~fWaRg~gW~~mal~d~le~lp~~~~~r~~l~~~l~d~v~al~r~Qd-e~ 248 (357)
T COG4225 170 YLRDPETGLYYHGWDEDGTMPWANNESGEPAFWARGNGWYAMALADLLELLPEDHPDRRELLNVLRDLVDALIRYQD-ES 248 (357)
T ss_pred HccCCCcCceEEeeccCCCCccccccCCCceeeecccchHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHhhc-cc
Confidence 1112210 00011 1123444555664 233444443222 2445666666666665443 11
Q ss_pred cCCCCCCCCCCCccccccCCcCccccchhhHHHHH-HHHHHccCCcchHHHHHHHHHhhhhcccC
Q 043003 378 GGTSHQEFWTDPKRIATALSAETEESCTTYNMLKV-SRYLFKWTKQVTYADYYERALTNGVLGIQ 441 (855)
Q Consensus 378 GG~g~~E~f~~~~~l~~~l~~~~~ETCat~nmlkl-~~~Lf~~tgd~~YaD~~ERaLyN~iLa~q 441 (855)
| -|.. -|-+.....+.||-+|...+.= .+-+-.=--+.+|+-..|+++ -+++...
T Consensus 249 G------lW~t--iLDd~~~~sy~EsSaSa~faYallkgi~~G~l~~~~~~~~~kA~-~aLl~~i 304 (357)
T COG4225 249 G------LWHT--ILDDGRPGSYLESSASAGFAYALLKGINLGILDPEYAPVAEKAL-DALLGHI 304 (357)
T ss_pred c------chhh--hhccCCCCCchhhhHHHHHHHHHHHHHhcCCCCchhhHHHHHHH-HHHHhhc
Confidence 1 1221 0001013567888777543321 111111223677778888763 3455543
No 31
>cd04434 LanC_like LanC-like proteins. LanC is the cyclase enzyme of the lanthionine synthetase. Lanthionine is a lantibiotic, a unique class of peptide antibiotics. They are ribosomally synthesized as a precursor peptide and then post-translationally modified to contain thioether cross-links called lanthionines (Lans) or methyllanthionines (MeLans), in addition to 2,3-didehydroalanine (Dha) and (Z)-2,3-didehydrobutyrine (Dhb). These unusual amino acids are introduced by the dehydration of serine and threonine residues, followed by thioether formation via addition of cysteine thiols, catalysed by LanB and LanC or LanM. LanC, the cyclase component, is a zinc metalloprotein, whose bound metal has been proposed to activate the thiol substrate for nucleophilic addition. A related domain is also present in LanM and other pro- and eukaryotic proteins of unknown function.
Probab=94.28 E-value=3.4 Score=45.27 Aligned_cols=229 Identities=14% Similarity=0.077 Sum_probs=127.0
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHHHHHHhhCCC---cccccCCchhhhhhhccccccccchhhHHHHHHHHHHHHHhCC
Q 043003 175 ATAMAWASTRNETVKQKMDAVMSVLSECQKKIGT---GYLSAFPSEFFDRLENLVYVWAPYYTIHKIMAGLLDQYTLANN 251 (855)
Q Consensus 175 A~A~~~a~t~D~~L~~k~d~~Vd~L~~~Q~~~~D---GYL~a~~~~~~~r~~~l~~~w~pyy~~HkI~aGLld~Y~~TG~ 251 (855)
+++..+..++|+.+++.++.+++.+...-...++ |++... -=|...|...|+.+++
T Consensus 10 ~l~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~G~---------------------~Gi~~~l~~l~~~~~~ 68 (343)
T cd04434 10 LLLELYRVTPDEKYQDLAHKALEYIVKSLSSLPDTDISLFSGL---------------------AGIAYALAALSKGLGD 68 (343)
T ss_pred HHHHHHhccCCccHHHHHHHHHHHHHHHHHhCCCCCeeeecch---------------------HHHHHHHHHHHHHcCC
Confidence 3445566788999999999998888776442111 111110 0133345677888999
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhhccchhhhcccccccccchHHHHHHHHHhcCCHHHHHHHHhccccccccccccccCCC
Q 043003 252 GQALNITIWMADYFNTRVQNLIARSSLERHYQTLNDESGGMNDVLYKLYGITKDPKHLKLAELFDKPCFLGLLAVKADNI 331 (855)
Q Consensus 252 ~kaL~ia~r~AD~~~~r~~~~~~~~~~~~~~~~l~~E~GGmneaL~~LY~~TGd~ryL~LA~~F~~~~~~~~la~~~d~l 331 (855)
++.++.+.+.++.+.+..... .. ......++.- .|+..+|..+|+.|+++.++++++...+.-. .......+..
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~---~~-~~~~d~~~G~-aG~~~~ll~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~ 142 (343)
T cd04434 69 QELLKELLELLLLLVELILED---LK-DLNYDLLSGL-AGLLLALLLLYKTFGEEIFLELIRKILDYLL-ELGKNGDGKI 142 (343)
T ss_pred HHHHHHHHHHHHHhhhhhhcc---cC-CCCcceeech-HHHHHHHHHHHHhcCCcCHHHHHHHHHHHHH-HhhhhccCCC
Confidence 999999999988877653210 00 0111122222 2578899999999999999999887643110 0000000000
Q ss_pred CC----------CcccCcch-HhHHHHHHHHHhCChHHHHHHHHHHHHhcccCeEeecCCCCCCCCCCCccccccCCcCc
Q 043003 332 AG----------LHANTHIP-LVCGVQNRYELTGDEQSMAMGTFFMDIINSSHSYATGGTSHQEFWTDPKRIATALSAET 400 (855)
Q Consensus 332 ~g----------~HanthiP-~~~G~a~~Y~~TGD~~y~~aa~~fwd~V~~~~~Y~TGG~g~~E~f~~~~~l~~~l~~~~ 400 (855)
.. ...=+..+ ++...+..++.+.|+.+.++++...+...+. ..-.++ .|.+...... .....
T Consensus 143 ~~~~~~~~~~~~~g~~HG~~Gi~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-----~~~~~~~~~~-~~~~~ 215 (343)
T cd04434 143 RWPMYFPEGRVNLGLAHGLAGILLALLLLYKKTVDKSLEALIKALLKYERRL-QDDSGG-----FWWPSRSNGG-NRFLV 215 (343)
T ss_pred ceeeeccCCccccchhhhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHc-cCCCCC-----CCCCCCCCCC-ccccc
Confidence 00 00000111 1233456788888888888887776655321 111111 1111000000 01112
Q ss_pred cccchhhHHHHHHHHHHccCCcchHHHHHHHHHhhhh
Q 043003 401 EESCTTYNMLKVSRYLFKWTKQVTYADYYERALTNGV 437 (855)
Q Consensus 401 ~ETCat~nmlkl~~~Lf~~tgd~~YaD~~ERaLyN~i 437 (855)
.=...+.+++..-..+...++|..+.+..++++-+.+
T Consensus 216 ~wChG~~Gi~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 252 (343)
T cd04434 216 AWCHGAPGILLALLLAYKALGDDKYDEAAEKALELAW 252 (343)
T ss_pred eecCCChhHHHHHHHHHHHcCcHHHHHHHHHHHHHHH
Confidence 2333456667777788889999999999998876544
No 32
>PLN02175 endoglucanase
Probab=93.93 E-value=1.3 Score=52.31 Aligned_cols=117 Identities=14% Similarity=-0.047 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHhCC------hhHHHHHHHHHHHHHHHhhhhhhccchhh--hcccccccccc----hHHHHHHHHHhcCC
Q 043003 238 IMAGLLDQYTLANN------GQALNITIWMADYFNTRVQNLIARSSLER--HYQTLNDESGG----MNDVLYKLYGITKD 305 (855)
Q Consensus 238 I~aGLld~Y~~TG~------~kaL~ia~r~AD~~~~r~~~~~~~~~~~~--~~~~l~~E~GG----mneaL~~LY~~TGd 305 (855)
+-|+|..++++-.+ ++.|+.|+++-+|..+.-+. +.... ....+-+..+| +.-+-+|||+.|||
T Consensus 174 ~AAALAaaS~vfk~~D~~YA~~lL~~Ak~ly~fA~~~~g~----y~~~~~~~~~~~Y~s~s~y~DEl~WAAawLY~ATgd 249 (484)
T PLN02175 174 TAAALAAASMVFRKVDSKYSRLLLATAKKVMQFAIQYRGA----YSDSLSSSVCPFYCSYSGYKDELMWGASWLLRATND 249 (484)
T ss_pred HHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHhCCCC----cccCccccccCccccCCCccHHHHHHHHHHHHHhCC
Confidence 34566666666554 36899999999998874322 11100 00001111112 33477899999999
Q ss_pred HHHHHHHHhccccccccccccccCCCCCCcccCcchHhHHHHHH-HHH------hCChHHHHHHHHHHHHhcc
Q 043003 306 PKHLKLAELFDKPCFLGLLAVKADNIAGLHANTHIPLVCGVQNR-YEL------TGDEQSMAMGTFFMDIINS 371 (855)
Q Consensus 306 ~ryL~LA~~F~~~~~~~~la~~~d~l~g~HanthiP~~~G~a~~-Y~~------TGD~~y~~aa~~fwd~V~~ 371 (855)
++||+.++.+..... ..... +.+ +..|+.++ +++ ++.+.|++.++.|+.....
T Consensus 250 ~~Yl~~~~~~~~~~~-------~~~~~--Wd~----k~~g~~vLla~~~~~~~~~~~~~y~~~~~~~~~~~~~ 309 (484)
T PLN02175 250 PYYANFIKSLGGGDQ-------PDIFS--WDN----KYAGAYVLLSRRALLNKDSNFEQYKQAAENFICKILP 309 (484)
T ss_pred HHHHHHHHHcCCCCC-------CCccC--CcC----HHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHhccC
Confidence 999987766421100 00000 011 23444433 332 3446889999999887654
No 33
>cd04794 euk_LANCL eukaryotic Lanthionine synthetase C-like protein. This family contains the lanthionine synthetase C-like proteins 1 and 2 which are related to the bacterial lanthionine synthetase components C (LanC). LANCL1 and LANCL2 (testes-specific adriamycin sensitivity protein) are thought to be peptide-modifying enzyme components in eukaryotic cells. Both proteins are produced in large quantities in the brain and testes and may have role in the immune surveillance of these organs.
Probab=93.91 E-value=0.79 Score=51.44 Aligned_cols=126 Identities=17% Similarity=0.084 Sum_probs=81.3
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHHHHHHhhCCCcccccCCchhhhhhhccccccccchhhHH-HHHHHHHHHHHhCChhH
Q 043003 176 TAMAWASTRNETVKQKMDAVMSVLSECQKKIGTGYLSAFPSEFFDRLENLVYVWAPYYTIHK-IMAGLLDQYTLANNGQA 254 (855)
Q Consensus 176 ~A~~~a~t~D~~L~~k~d~~Vd~L~~~Q~~~~DGYL~a~~~~~~~r~~~l~~~w~pyy~~Hk-I~aGLld~Y~~TG~~ka 254 (855)
+..++..++|+++++.+...++.+.+.+. ++|.+...... +- +..-.-||.|=. |...++.+++.+++++.
T Consensus 174 L~~~~~~~~~~~~~~~i~~~i~~~~~~~~--~~g~w~~~~~~---~~---~~~~~~wChG~~Gi~~~l~~~~~~~~~~~~ 245 (343)
T cd04794 174 LLQTPLFLLKPSLAPLIKRSLDYLLSLQF--PSGNFPSSLGN---RK---RDRLVQWCHGAPGIVYLLAKAYLVFKEEQY 245 (343)
T ss_pred HHhhhhhcCCccHHHHHHHHHHHHHHhhc--cCCCCCCccCC---CC---CCccccccCCCchHHHHHHHHHHHhCCHHH
Confidence 44445567899999999999999998877 66754221110 00 000011443321 44557789999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhccchhhhcccccccccchHHHHHHHHHhcCCHHHHHHHHhccc
Q 043003 255 LNITIWMADYFNTRVQNLIARSSLERHYQTLNDESGGMNDVLYKLYGITKDPKHLKLAELFDK 317 (855)
Q Consensus 255 L~ia~r~AD~~~~r~~~~~~~~~~~~~~~~l~~E~GGmneaL~~LY~~TGd~ryL~LA~~F~~ 317 (855)
++.+.+.++.+.++ .... .....-|... |+-++|.++|+.|++++|++.|..+..
T Consensus 246 ~~~~~~~~~~~~~~--g~~~-----~~~~lCHG~~-G~~~~lL~~~~~~~~~~~~~~a~~~~~ 300 (343)
T cd04794 246 LEAAIKCGELIWKR--GLLK-----KGPGLCHGIA-GNAYAFLLLYRLTGDLKYLYRACKFAE 300 (343)
T ss_pred HHHHHHHHHHHHHh--CCcc-----CCCccccCcc-chHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 99999988876532 1100 0001112222 577899999999999999999998754
No 34
>COG2942 N-acyl-D-glucosamine 2-epimerase [Carbohydrate transport and metabolism]
Probab=93.88 E-value=1.2 Score=50.79 Aligned_cols=191 Identities=17% Similarity=0.095 Sum_probs=105.0
Q ss_pred ccccchhhHHHHHHHHHHHhCCChH---HHHHHHHHHHHHHHHHhhCCCcccccCCchhhhhhhccccccccchhhHHHH
Q 043003 163 ELRGHFLGHYLSATAMAWASTRNET---VKQKMDAVMSVLSECQKKIGTGYLSAFPSEFFDRLENLVYVWAPYYTIHKIM 239 (855)
Q Consensus 163 dlrGH~~Gh~LsA~A~~~a~t~D~~---L~~k~d~~Vd~L~~~Q~~~~DGYL~a~~~~~~~r~~~l~~~w~pyy~~HkI~ 239 (855)
|+++|.+ -|=|+|. ++..++++ +++.+-.+++.+..-++.--.||.-+.+-. ... .--=.+|+++
T Consensus 114 d~Y~haF--allA~A~-~a~a~~~~a~~~~~~a~~~l~~~~~~~~~pl~~~e~~~~~~------~pl---~sNp~MHl~E 181 (388)
T COG2942 114 DLYGHAF--ALLAAAH-AATAGPPRADELLDEALDVLERRFWREEHPLGGFEEDNPGS------APL---GSNPHMHLLE 181 (388)
T ss_pred hHHHHHH--HHHHHHH-HHhcCChhHHHHHHHHHHHHHHHHhhhcCCcccccccCCCC------Ccc---CCCcchHHHH
Confidence 5655543 2344444 33345554 555555555555544442123444333311 100 1122488887
Q ss_pred HHHHHHHHHhCChhHHHHHHHHHHHHHHHhhhh----hhccchhhhccccccccc-----c--hH--HHHHHHHHhcCCH
Q 043003 240 AGLLDQYTLANNGQALNITIWMADYFNTRVQNL----IARSSLERHYQTLNDESG-----G--MN--DVLYKLYGITKDP 306 (855)
Q Consensus 240 aGLld~Y~~TG~~kaL~ia~r~AD~~~~r~~~~----~~~~~~~~~~~~l~~E~G-----G--mn--eaL~~LY~~TGd~ 306 (855)
| +++.|+.+|.+..++.|.+.|+-+..+|-.. +..+-+ .-|.+.+.+-| | ++ --|.++-+.-|+.
T Consensus 182 A-~LA~~e~~~~~~~~~~A~~ia~l~~~rf~d~~~g~v~E~fd-~dW~p~~~frg~~~ePGH~fEW~~Lll~~a~~~~~~ 259 (388)
T COG2942 182 A-MLAAYEATGEKTWLDRADRIADLIISRFADAESGLVREHFD-HDWNPAHGFRGRGIEPGHQFEWAWLLLDIARRRGRA 259 (388)
T ss_pred H-HHHHHhccCchhHHHHHHHHHHHHHHHhhhcccCcHhhhcc-ccCCcCCCcccCCCCCchHHHHHHHHHHHHHHhchh
Confidence 6 7899999999999999999999999987532 111111 12332222222 1 12 2567888889999
Q ss_pred HHHHHHHhccccccccccccccCCCC-CCc------ccCcc------hHh--HH-HHHHHHHhC-ChHHHHHHHHHHHHh
Q 043003 307 KHLKLAELFDKPCFLGLLAVKADNIA-GLH------ANTHI------PLV--CG-VQNRYELTG-DEQSMAMGTFFMDII 369 (855)
Q Consensus 307 ryL~LA~~F~~~~~~~~la~~~d~l~-g~H------anthi------P~~--~G-~a~~Y~~TG-D~~y~~aa~~fwd~V 369 (855)
..+..|+++.+... +.+-|.-. +.+ ...|- |.. ++ +..+++.|| ++.|.+...++|+..
T Consensus 260 ~l~~~A~~lf~~a~----~~g~d~~~gg~~~sl~~D~~~~d~~~r~WpQ~E~l~AA~ala~~~~~~~~y~~~~~R~~~~~ 335 (388)
T COG2942 260 WLIEAARRLFDIAV----ADGWDPERGGAYYSLDDDGSPHDRQQRLWPQTEALKAAVALAETTGARERYWQWYARAWDYL 335 (388)
T ss_pred HHHHHHHHHHHHHH----HhccCcccCeEEEEecCCCCcCCHHHhhChHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH
Confidence 99999988764321 11111100 000 11122 221 34 445678899 899988888888876
Q ss_pred cc
Q 043003 370 NS 371 (855)
Q Consensus 370 ~~ 371 (855)
..
T Consensus 336 ~~ 337 (388)
T COG2942 336 WW 337 (388)
T ss_pred HH
Confidence 53
No 35
>KOG2787 consensus Lanthionine synthetase C-like protein 1 [Defense mechanisms]
Probab=93.81 E-value=0.52 Score=52.01 Aligned_cols=128 Identities=21% Similarity=0.250 Sum_probs=82.9
Q ss_pred hHHHHHHHHHHHhC----CChHHHHHHHHHHHHHHHHHhhCCCcccccCCch---hhhhhhccccccc-cchhhHHHHHH
Q 043003 170 GHYLSATAMAWAST----RNETVKQKMDAVMSVLSECQKKIGTGYLSAFPSE---FFDRLENLVYVWA-PYYTIHKIMAG 241 (855)
Q Consensus 170 Gh~LsA~A~~~a~t----~D~~L~~k~d~~Vd~L~~~Q~~~~DGYL~a~~~~---~~~r~~~l~~~w~-pyy~~HkI~aG 241 (855)
.|=|-++-+++... .++++.+-+..-||.+.+.|- ++|- ||.. ..||+ ..+.|. | | .+. -
T Consensus 221 AhGLagI~~vLm~~~L~~d~~~~~~dVK~sldym~~~rf--psGN---yP~s~~~~~drL--VhWcHGAp---G-v~~-~ 288 (403)
T KOG2787|consen 221 AHGLAGILYVLMDPTLKVDQPALLKDVKGSLDYMIQNRF--PSGN---YPSSEGNKRDRL--VHWCHGAP---G-VAY-T 288 (403)
T ss_pred hhhHHHHHHHHhCCCCCCcchhHHHhhhhHHHHHHHccC--CCCC---CCcccCCCccee--eeeccCCc---h-HHH-H
Confidence 45566666666542 356788888899999988887 7663 4422 22222 112221 2 1 122 2
Q ss_pred HHHHHHHhCChhHHHHHHHHHHHHHHHhhhhhhccchhhhcccccccccchHHHHHHHHHhcCCHHHHHHHHhccc
Q 043003 242 LLDQYTLANNGQALNITIWMADYFNTRVQNLIARSSLERHYQTLNDESGGMNDVLYKLYGITKDPKHLKLAELFDK 317 (855)
Q Consensus 242 Lld~Y~~TG~~kaL~ia~r~AD~~~~r~~~~~~~~~~~~~~~~l~~E~GGmneaL~~LY~~TGd~ryL~LA~~F~~ 317 (855)
|+.+|+..+.++.|+.|.+.+|-+.++ .++.+....-|.. .|..-++.-||++|||.+||-=|++|..
T Consensus 289 L~kAy~VF~Eekyl~aa~ecadvVW~r--GlLkkg~GichGv------aGNaYvFLsLyRLT~d~kYlyRA~kFae 356 (403)
T KOG2787|consen 289 LAKAYQVFKEEKYLEAAMECADVVWKR--GLLKKGVGICHGV------AGNAYVFLSLYRLTGDMKYLYRAKKFAE 356 (403)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHh--hhhhcCCcccccc------cCchhhhHhHHHHcCcHHHHHHHHHHHH
Confidence 668999999999999999999998875 2222211111211 1344588899999999999999999864
No 36
>cd04793 LanC LanC is the cyclase enzyme of the lanthionine synthetase. Lanthinoine is a lantibiotic, a unique class of peptide antibiotics. They are ribosomally synthesized as precursor peptides and then post-translationally modified to contain thioether cross-links called lanthionines (Lans) or methyllanthionines (MeLans) in addition to 2,3-didehydroalanine (Dha) and (Z)-2,3-didehydrobutyrine (Dhb). These unusual amino acids are introduced by the dehydration of serine and threonine residues, followed by thioether formation via addition of cysteine thiols, catalysed by LanB and LanC or LanM. LanC, the cyclase component, is a zinc metalloprotein, whose bound metal has been proposed to activate the thiol substrate for nucleophilic addition.
Probab=93.67 E-value=2.2 Score=48.51 Aligned_cols=198 Identities=12% Similarity=-0.071 Sum_probs=104.1
Q ss_pred HHHHHHHHHHH-h-CCChHHHHHHHHHHHHHHHHHhhCCCcccccCCchhhhhhhccccccccch-hhHH---HHHHHHH
Q 043003 171 HYLSATAMAWA-S-TRNETVKQKMDAVMSVLSECQKKIGTGYLSAFPSEFFDRLENLVYVWAPYY-TIHK---IMAGLLD 244 (855)
Q Consensus 171 h~LsA~A~~~a-~-t~D~~L~~k~d~~Vd~L~~~Q~~~~DGYL~a~~~~~~~r~~~l~~~w~pyy-~~Hk---I~aGLld 244 (855)
|=++++...+- . +.+.+....+..+++.|.+.+.....+|+-.........+... ....++. ..|= |...|..
T Consensus 105 ~G~aGi~~~Ll~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~G~aHG~aGi~~~L~~ 183 (382)
T cd04793 105 SGLSGIGRYLLLRHEPDSELLREILDYLVYLTEPLNQDITLYIWSENQPSETESKEF-PEGHINLGLAHGIAGPLALLAL 183 (382)
T ss_pred echHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHhcCCCCccCcCcCCCccccccC-CCccccccchhcchHHHHHHHH
Confidence 44444443332 2 2567777778888888877644223333332211000001000 0011110 1132 4556666
Q ss_pred HHHHh-CChhHHHHHHHHHHHHHHHhhhhhh-ccchhh-----------hcc---ccccccc--chHHHHHHHHHhcCCH
Q 043003 245 QYTLA-NNGQALNITIWMADYFNTRVQNLIA-RSSLER-----------HYQ---TLNDESG--GMNDVLYKLYGITKDP 306 (855)
Q Consensus 245 ~Y~~T-G~~kaL~ia~r~AD~~~~r~~~~~~-~~~~~~-----------~~~---~l~~E~G--GmneaL~~LY~~TGd~ 306 (855)
+|+.+ ++++.++++.+..+|+.+.+...-. .+...+ ... ...=-+| |+..++..+++.++|+
T Consensus 184 ~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~wChG~~Gi~~~l~~~~~~~~~~ 263 (382)
T cd04793 184 AKERGIRVDGQLEAIQKIIAWLDRWRLKNRKGPWWPGLITNREQIGGRPNNPNPFRDAWCYGTPGIARALQLAGKALDDQ 263 (382)
T ss_pred HHHcCCCcCChHHHHHHHHHHHHHHHHhCCCCCCCcccccHHHHhccccccCCCCCCCCCCCcHHHHHHHHHHHHHhCCH
Confidence 78877 8999999999999988765421000 000000 000 0000133 6889999999999999
Q ss_pred HHHHHHHhccccccccccccc-cCCCCCCcccCcchHhHHHHHHHHHhCChHHHHHHHHHHHHhcc
Q 043003 307 KHLKLAELFDKPCFLGLLAVK-ADNIAGLHANTHIPLVCGVQNRYELTGDEQSMAMGTFFMDIINS 371 (855)
Q Consensus 307 ryL~LA~~F~~~~~~~~la~~-~d~l~g~HanthiP~~~G~a~~Y~~TGD~~y~~aa~~fwd~V~~ 371 (855)
++++.|....+...-...... .....-.|-.. =+...+.++|+.|+|+.++++++++.+.+..
T Consensus 264 ~~~~~a~~~~~~~~~~~~~~~~~~~~~lChG~~--G~~~~l~~~~~~~~~~~~~~~a~~~~~~~l~ 327 (382)
T cd04793 264 KLQEAAEKILKAALKDKKQLSKLISPTLCHGLA--GLLFIFYLLYKDTNTNEFKSALEYLLNQIIS 327 (382)
T ss_pred HHHHHHHHHHHHHHhChhhhccCCCCCcCccHH--HHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 999998876543210000000 00001112100 0123456779999999999999998887764
No 37
>PTZ00470 glycoside hydrolase family 47 protein; Provisional
Probab=93.40 E-value=1.2 Score=52.99 Aligned_cols=197 Identities=21% Similarity=0.214 Sum_probs=105.7
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHHHHHHhhCC-CcccccCCchhhhhhhc----cccccccchhhHHHHHHHHHHHHHhC
Q 043003 176 TAMAWASTRNETVKQKMDAVMSVLSECQKKIG-TGYLSAFPSEFFDRLEN----LVYVWAPYYTIHKIMAGLLDQYTLAN 250 (855)
Q Consensus 176 ~A~~~a~t~D~~L~~k~d~~Vd~L~~~Q~~~~-DGYL~a~~~~~~~r~~~----l~~~w~pyy~~HkI~aGLld~Y~~TG 250 (855)
..++...|+|+++.+.++.+.+.|.+.+. . +|-+..+-...-..|.. +-..-..||=. |+.+|.++|
T Consensus 231 F~~LS~lTGd~kY~~~a~~i~~~l~~~~~--~~~GL~p~~i~~~~g~~~~~~~siGa~~DS~YEY------LlK~~il~~ 302 (522)
T PTZ00470 231 FNYLSEITGDPKYAEYVDKVMDALFSMKP--AINGLYPIFLNPDAGRFCGNHISLGALGDSYYEY------LLKQWLYTN 302 (522)
T ss_pred HHHHHHhhCCHHHHHHHHHHHHHHHhcCC--CCCCccceEECCccCccCCCceeecCCcchhHHH------HHHHHHhcC
Confidence 44456679999999999999999987655 4 56554432111111221 11111235432 668899996
Q ss_pred --ChhHHHHHHHHHHHHHHHhhhh-------hhccchhh--h-cccccccccchHHHHHHHHH----hcCCHHHHHHHHh
Q 043003 251 --NGQALNITIWMADYFNTRVQNL-------IARSSLER--H-YQTLNDESGGMNDVLYKLYG----ITKDPKHLKLAEL 314 (855)
Q Consensus 251 --~~kaL~ia~r~AD~~~~r~~~~-------~~~~~~~~--~-~~~l~~E~GGmneaL~~LY~----~TGd~ryL~LA~~ 314 (855)
+++.+++-.+..+-+.+.+-.. +......+ + ..-+.|-.|||- +|.-..+ ...+++|+++|+.
T Consensus 303 ~~d~~~~~~~~~a~~~i~~~l~~~s~~~~~~v~~~~~~~~~~~~~hL~cF~gG~~-aLg~~~~~~~~~~~~~~~~~~a~~ 381 (522)
T PTZ00470 303 GREERYRRLFVESAKGIIEHLYKRSPKGLTYIAEMDGGSLTNKMEHLACFAGGMF-ALGAAINITPDDEKSARYMEVGEE 381 (522)
T ss_pred CCcHHHHHHHHHHHHHHHHHhcccCCCCcEEEeeccCCcCcchhhhhhhhccchh-hhcccccccccccccHHHHHHHHH
Confidence 5667777766666665543110 00000000 0 012234445552 2211011 1235789999987
Q ss_pred cccccc---------cccccccc----CCCCCCcccCc---chH-hHHHHHHHHHhCChHHHHHHHHHHHHhcccCeEee
Q 043003 315 FDKPCF---------LGLLAVKA----DNIAGLHANTH---IPL-VCGVQNRYELTGDEQSMAMGTFFMDIINSSHSYAT 377 (855)
Q Consensus 315 F~~~~~---------~~~la~~~----d~l~g~Hanth---iP~-~~G~a~~Y~~TGD~~y~~aa~~fwd~V~~~~~Y~T 377 (855)
+.+.|+ +.|....- ....-.....+ -|- +...--+|++|||+.|++.+...|+.+. ++.-+.
T Consensus 382 l~~tC~~~Y~~~~tGl~PE~~~~~~~~~~~~~~~~d~~Y~LRPE~iES~fylyR~TgD~~yre~gW~~f~ai~-k~~rt~ 460 (522)
T PTZ00470 382 VTKTCYETYATSPTGLGPEIFHFDPNSGDISPNVHDSHYILRPETVESIFILYRLTGDPKYREWAWKIFQAIE-KHCKTE 460 (522)
T ss_pred HHHHHHHHHHhcccCCCCceEEeccCccccccccCCCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHHHH-HHhcCC
Confidence 654322 12211100 00000001111 222 3677888999999999999999999986 466667
Q ss_pred cCCCC
Q 043003 378 GGTSH 382 (855)
Q Consensus 378 GG~g~ 382 (855)
+|.++
T Consensus 461 ~Gya~ 465 (522)
T PTZ00470 461 NGYSG 465 (522)
T ss_pred ccccc
Confidence 77665
No 38
>PF06917 Pectate_lyase_2: Periplasmic pectate lyase; InterPro: IPR010702 This family consists of several Enterobacterial periplasmic pectate lyase proteins. A major virulence determinant of the plant-pathogenic enterobacterium Erwinia chrysanthemi is the production of pectate lyase enzymes that degrade plant cell walls [].; GO: 0016837 carbon-oxygen lyase activity, acting on polysaccharides, 0045490 pectin catabolic process, 0005737 cytoplasm; PDB: 2V8J_A 2V8K_A 2V8I_A.
Probab=92.80 E-value=1.4 Score=51.35 Aligned_cols=83 Identities=11% Similarity=0.091 Sum_probs=50.9
Q ss_pred HHHHHHHHHhCChHHHHHHHHHHHHhcccCeEeecCCCCCCCCCCCccccccCCcCccccchhhHHHHHHHHHHccCCcc
Q 043003 344 CGVQNRYELTGDEQSMAMGTFFMDIINSSHSYATGGTSHQEFWTDPKRIATALSAETEESCTTYNMLKVSRYLFKWTKQV 423 (855)
Q Consensus 344 ~G~a~~Y~~TGD~~y~~aa~~fwd~V~~~~~Y~TGG~g~~E~f~~~~~l~~~l~~~~~ETCat~nmlkl~~~Lf~~tgd~ 423 (855)
.-.++.|++++|+...+.+...++.. |.| |.-..+..-+ ......+|++.-+|+..-.|++.|++.
T Consensus 391 l~~vra~~~s~D~~Lw~~~~~m~~~~---------gLG--dig~~~~~~~---~~~~~~~~~sp~~L~allEL~~atq~~ 456 (557)
T PF06917_consen 391 LPYVRAYRLSRDPELWDLARTMAHHF---------GLG--DIGNAAGKEP---RVNMQTDNASPYLLFALLELYQATQDA 456 (557)
T ss_dssp HHHHHHHHHS--HHHHHHHHHHHHHT---------T-E--E-TTBTTBS----EE-TT-----HHHHHHHHHHHHHH--H
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHhhc---------Ccc--cccCcccccc---ccccCCCCCCHHHHHHHHHHHHHhCCH
Confidence 45678899999999999888887754 112 1111111111 135677999999999999999999999
Q ss_pred hHHHHHHHHHhhhhccc
Q 043003 424 TYADYYERALTNGVLGI 440 (855)
Q Consensus 424 ~YaD~~ERaLyN~iLa~ 440 (855)
+|+++.|++.=|=+=..
T Consensus 457 ~~l~lA~~~g~~l~~~~ 473 (557)
T PF06917_consen 457 RYLELADQVGENLFEQH 473 (557)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999887755444
No 39
>KOG2244 consensus Highly conserved protein containing a thioredoxin domain [General function prediction only]
Probab=92.06 E-value=4.4 Score=47.77 Aligned_cols=216 Identities=15% Similarity=0.171 Sum_probs=124.8
Q ss_pred cccchhhHhHHHhcCCCCCCCCCCCcccCCcccccchhhHH-------HHHHHHHHHhCCChHHHHHHHHHHHHHHHHHh
Q 043003 132 LDVDRLVWSFRKTAGLPTPGAPYGGWEDQKMELRGHFLGHY-------LSATAMAWASTRNETVKQKMDAVMSVLSECQK 204 (855)
Q Consensus 132 ld~drLL~nFR~~AGl~~~g~~~gGWe~~dsdlrGH~~Gh~-------LsA~A~~~a~t~D~~L~~k~d~~Vd~L~~~Q~ 204 (855)
+.|.++.+-|-.--|+..+|. ..+.+|-.||+.||= .|+.|--. ...-+++++.+++.-+.|-.+..
T Consensus 418 i~p~~~fdl~a~hygvk~sGn-----vs~ssDPhgel~gkNVL~vr~s~e~taanf-~lsve~~kkll~e~~e~L~~aR~ 491 (786)
T KOG2244|consen 418 IGPASLFDLFAEHYGVKKSGN-----VSSSSDPHGELAGKNVLIVRNSTEATAANF-SLSVEKYKKLLGECREKLFDARL 491 (786)
T ss_pred CCcchHHHHHHHHcCCCCCCC-----CCCCCCCcccccCceEEEEecchHhhHhhc-cccHHHHHHHHHHHHHHHHHHhh
Confidence 456677777777778876553 244466778887774 23333211 22346777777777777766665
Q ss_pred hCCCcccccCCchhhhhhhccccccccchhhHHHHHHHHHHHHHhCCh-hHHHHHHHHHHHHHHHhhhhhhccch-----
Q 043003 205 KIGTGYLSAFPSEFFDRLENLVYVWAPYYTIHKIMAGLLDQYTLANNG-QALNITIWMADYFNTRVQNLIARSSL----- 278 (855)
Q Consensus 205 ~~~DGYL~a~~~~~~~r~~~l~~~w~pyy~~HkI~aGLld~Y~~TG~~-kaL~ia~r~AD~~~~r~~~~~~~~~~----- 278 (855)
+.+.=-|.+ +.. -.|. | +++.|+.-++.+++-+ +.++-|...++++-+.+-+.-++.-+
T Consensus 492 kRPkPHLDs---Kii-------~sWn----G-LviSgl~kag~~~~a~~~y~~~a~~~a~fl~k~m~d~~eklliR~scY 556 (786)
T KOG2244|consen 492 KRPKPHLDS---KII-------VSWN----G-LVISGLAKAGKILKAEPEYTKYAFPVANFLPKDMIDVAEKLLIRGSCY 556 (786)
T ss_pred cCCCCCccc---hhe-------eecc----c-hhhHHHHHHHHHhhcCHHHHHHHHHHHhhhhhhhhchhhhheeecccc
Confidence 323222221 111 1232 2 4678899999988877 99999999999988766432111100
Q ss_pred ------hhh-----cc-cccccccchHHHHHHHHHhcCCHHHHHHHHhcccc---cccc------ccccccCCCCC---C
Q 043003 279 ------ERH-----YQ-TLNDESGGMNDVLYKLYGITKDPKHLKLAELFDKP---CFLG------LLAVKADNIAG---L 334 (855)
Q Consensus 279 ------~~~-----~~-~l~~E~GGmneaL~~LY~~TGd~ryL~LA~~F~~~---~~~~------~la~~~d~l~g---~ 334 (855)
..+ |. .+-+.+.=+..+|.+||+.+|+-.||++|.++.+. -|++ ....+.|..-. -
T Consensus 557 ~ga~g~ve~~n~~~~~~~FldDYAFlI~gLLDlYea~~~~e~LkwA~~LQdtqdklFWdgggYF~Se~~~~~v~vRlkeD 636 (786)
T KOG2244|consen 557 DGASGRVEHSNRPSKAPAFLDDYAFLISGLLDLYEAGGGIEWLKWAIKLQDTQDKLFWDGGGYFISEKTDEDVSVRLKED 636 (786)
T ss_pred cCCCcceeccCCccccchhhhhHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHheecCCceeeeeccCCCcceeeccc
Confidence 000 00 00111111356999999999999999999887542 2322 11111111100 1
Q ss_pred cccCcchH-----hHHHHHHHHHhCChHHHHHHHHHHHHh
Q 043003 335 HANTHIPL-----VCGVQNRYELTGDEQSMAMGTFFMDII 369 (855)
Q Consensus 335 HanthiP~-----~~G~a~~Y~~TGD~~y~~aa~~fwd~V 369 (855)
| ....|. .+.+.++|-+++.+.|++.|.......
T Consensus 637 h-DGAEPs~nSVsahNLvrL~~~~~~e~yl~ka~~ll~~f 675 (786)
T KOG2244|consen 637 H-DGAEPSGNSVSAHNLVRLASIVAAESYLNKAHRLLAVF 675 (786)
T ss_pred c-CCCCCCccchhhhhHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 1 112222 145678899999999998887666544
No 40
>cd04793 LanC LanC is the cyclase enzyme of the lanthionine synthetase. Lanthinoine is a lantibiotic, a unique class of peptide antibiotics. They are ribosomally synthesized as precursor peptides and then post-translationally modified to contain thioether cross-links called lanthionines (Lans) or methyllanthionines (MeLans) in addition to 2,3-didehydroalanine (Dha) and (Z)-2,3-didehydrobutyrine (Dhb). These unusual amino acids are introduced by the dehydration of serine and threonine residues, followed by thioether formation via addition of cysteine thiols, catalysed by LanB and LanC or LanM. LanC, the cyclase component, is a zinc metalloprotein, whose bound metal has been proposed to activate the thiol substrate for nucleophilic addition.
Probab=90.41 E-value=3.6 Score=46.75 Aligned_cols=146 Identities=14% Similarity=0.064 Sum_probs=85.4
Q ss_pred chhhHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHhhCCCc-cccc-CCch-hhhhh-hccccccccchhhHH-HHH
Q 043003 167 HFLGHYLSATAMAWAST-RNETVKQKMDAVMSVLSECQKKIGTG-YLSA-FPSE-FFDRL-ENLVYVWAPYYTIHK-IMA 240 (855)
Q Consensus 167 H~~Gh~LsA~A~~~a~t-~D~~L~~k~d~~Vd~L~~~Q~~~~DG-YL~a-~~~~-~~~r~-~~l~~~w~pyy~~Hk-I~a 240 (855)
|-+.=.+.+++.++..+ .++..++.+.+.++.+.+.+.....| |... ++.. ....- ........-||.|-. |..
T Consensus 172 HG~aGi~~~L~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~wChG~~Gi~~ 251 (382)
T cd04793 172 HGIAGPLALLALAKERGIRVDGQLEAIQKIIAWLDRWRLKNRKGPWWPGLITNREQIGGRPNNPNPFRDAWCYGTPGIAR 251 (382)
T ss_pred hcchHHHHHHHHHHHcCCCcCChHHHHHHHHHHHHHHHHhCCCCCCCcccccHHHHhccccccCCCCCCCCCCCcHHHHH
Confidence 44444556666667677 89999999999999888877533332 1111 1100 00000 000001112444322 555
Q ss_pred HHHHHHHHhCChhHHHHHHHHHHHHHHHhhhhhhccchhhhcccccccccchHHHHHHHHHhcCCHHHHHHHHhccc
Q 043003 241 GLLDQYTLANNGQALNITIWMADYFNTRVQNLIARSSLERHYQTLNDESGGMNDVLYKLYGITKDPKHLKLAELFDK 317 (855)
Q Consensus 241 GLld~Y~~TG~~kaL~ia~r~AD~~~~r~~~~~~~~~~~~~~~~l~~E~GGmneaL~~LY~~TGd~ryL~LA~~F~~ 317 (855)
+++.+++.+++++.++.+.+...-+..+.... ...... ..-|.- -|+.+.|.++|+.|+++++++.|+++.+
T Consensus 252 ~l~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~-~lChG~-~G~~~~l~~~~~~~~~~~~~~~a~~~~~ 323 (382)
T cd04793 252 ALQLAGKALDDQKLQEAAEKILKAALKDKKQL---SKLISP-TLCHGL-AGLLFIFYLLYKDTNTNEFKSALEYLLN 323 (382)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHhChhhh---ccCCCC-CcCccH-HHHHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 67788999999999999988877655432110 000000 011222 1688999999999999999999987743
No 41
>PLN02345 endoglucanase
Probab=90.39 E-value=45 Score=39.59 Aligned_cols=124 Identities=12% Similarity=0.044 Sum_probs=67.5
Q ss_pred ChHHHHHHHHHHHHHHHHHhhCCCcccccC-Cchhh--hhhhcccc--ccccchh----------hHHHHHHHHHHHHHh
Q 043003 185 NETVKQKMDAVMSVLSECQKKIGTGYLSAF-PSEFF--DRLENLVY--VWAPYYT----------IHKIMAGLLDQYTLA 249 (855)
Q Consensus 185 D~~L~~k~d~~Vd~L~~~Q~~~~DGYL~a~-~~~~~--~r~~~l~~--~w~pyy~----------~HkI~aGLld~Y~~T 249 (855)
-+.+++.++.-.|.|.+||. .||-+-.- -...+ ..|..-.+ .--|.|. --.+-|+|..+++.-
T Consensus 81 ~~~~ldelkw~~Dyllk~~~--~~~~~y~qVg~~~~Dh~~W~~Pe~~~~~R~~~~~~~~~pgsd~a~~~AAAlA~as~vf 158 (469)
T PLN02345 81 LDSAKDSLKWITDYLINAHP--SENVLYIQVGDPKLDHKCWERPETMDEKRPLTKINTSSPGSEVAAETAAAMAAASLVF 158 (469)
T ss_pred hHHHHHHHhHHHHHHHHhcC--CCCeEEEEecCCCCCcccCCChhhcCCcceEEecCCCCCCcHHHHHHHHHHHHHHHHh
Confidence 36888889999999999998 55533211 00000 01211000 0011111 123446666666666
Q ss_pred CC------hhHHHHHHHHHHHHHHHhhhhhhccchhh-hcc--cccccccchHHHHHHHHHhcCCHHHHHHHH
Q 043003 250 NN------GQALNITIWMADYFNTRVQNLIARSSLER-HYQ--TLNDESGGMNDVLYKLYGITKDPKHLKLAE 313 (855)
Q Consensus 250 G~------~kaL~ia~r~AD~~~~r~~~~~~~~~~~~-~~~--~l~~E~GGmneaL~~LY~~TGd~ryL~LA~ 313 (855)
.+ .+.|+.|+++-+|..+.-+......+... ... ....| +.-+-+|||+.|||++||+.+.
T Consensus 159 k~~D~~YA~~lL~~Ak~ly~fa~~~~g~y~~~~~~~~~~Y~s~~~~DE---l~WAAawLy~ATgd~~Yl~~~~ 228 (469)
T PLN02345 159 KSSDSTYSDTLLKHAKQLFNFADKYRGSYSESIPEVQDYYNSTGYGDE---LLWAASWLYHATGDKTYLAYVT 228 (469)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHhCCCcccCCCCccCCCCCCcccccH---HHHHHHHHHHHhCCHHHHHHHH
Confidence 54 46899999999998764221100000000 000 01112 4557799999999999999874
No 42
>COG2942 N-acyl-D-glucosamine 2-epimerase [Carbohydrate transport and metabolism]
Probab=89.79 E-value=23 Score=40.66 Aligned_cols=280 Identities=14% Similarity=0.031 Sum_probs=146.4
Q ss_pred hHhHHHhcCCCCCCCCCCCcccCCc------ccccchhhHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhCCCccc
Q 043003 138 VWSFRKTAGLPTPGAPYGGWEDQKM------ELRGHFLGHYLSATAMAWASTRNETVKQKMDAVMSVLSECQKKIGTGYL 211 (855)
Q Consensus 138 L~nFR~~AGl~~~g~~~gGWe~~ds------dlrGH~~Gh~LsA~A~~~a~t~D~~L~~k~d~~Vd~L~~~Q~~~~DGYL 211 (855)
+-+|-.++|++++|-.|-.+-..|. +=|.+..-.-+=..|.++.....+..++.++.=|+.+.+.=.--..||.
T Consensus 20 ~lp~w~~~g~d~~~GGffe~l~~dG~~~~~~~rr~~~~~Rqvy~fA~A~~~g~~~~~~~~v~hG~~y~~~~~R~~~gg~~ 99 (388)
T COG2942 20 ALPFWLNAGVDTEGGGFFEALDRDGQILDETDRRLRVQARQVYCFAVAGLLGWRGPWLDAVAHGIAYLARVGRDPEGGWY 99 (388)
T ss_pred hhhhhcccCcCCCCCCceeeeccCCccccCCCceeeeehhHHHHHHHHHHhcCCccHHHHHHhHHHHHHhcCcCCCCCeE
Confidence 4578899999876532222222222 2223334444555555555555667888898888888865332123443
Q ss_pred ccCCc--hhhhhhhccccccccchhhHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHhhhhhhccchhhhcccccccc
Q 043003 212 SAFPS--EFFDRLENLVYVWAPYYTIHKIMAGLLDQYTLANNGQALNITIWMADYFNTRVQNLIARSSLERHYQTLNDES 289 (855)
Q Consensus 212 ~a~~~--~~~~r~~~l~~~w~pyy~~HkI~aGLld~Y~~TG~~kaL~ia~r~AD~~~~r~~~~~~~~~~~~~~~~l~~E~ 289 (855)
..... ++-+ ...+ . |.--..+.|+ +++..+|++++.++....-+.+.+++.+.-++......-......-
T Consensus 100 ~~~~~dg~~~D---at~d---~-Y~haFallA~-A~~a~a~~~~a~~~~~~a~~~l~~~~~~~~~pl~~~e~~~~~~~pl 171 (388)
T COG2942 100 FALDNDGGPVD---ATKD---L-YGHAFALLAA-AHAATAGPPRADELLDEALDVLERRFWREEHPLGGFEEDNPGSAPL 171 (388)
T ss_pred EEecCCCCccc---ccHh---H-HHHHHHHHHH-HHHHhcCChhHHHHHHHHHHHHHHHHhhhcCCcccccccCCCCCcc
Confidence 33221 1110 0111 1 2222233344 6788899999999999998888888754211111100000110011
Q ss_pred cc-----hHHHHHHHHHhcCCHHHHHHHHhccc---cccccccccccCC---CCCCcccCcchHh--HHH--------HH
Q 043003 290 GG-----MNDVLYKLYGITKDPKHLKLAELFDK---PCFLGLLAVKADN---IAGLHANTHIPLV--CGV--------QN 348 (855)
Q Consensus 290 GG-----mneaL~~LY~~TGd~ryL~LA~~F~~---~~~~~~la~~~d~---l~g~HanthiP~~--~G~--------a~ 348 (855)
|+ |.|+|.--|+.||+++|++.|..+.+ ..|++.....-.+ ..+.++....|-+ =|| .+
T Consensus 172 ~sNp~MHl~EA~LA~~e~~~~~~~~~~A~~ia~l~~~rf~d~~~g~v~E~fd~dW~p~~~frg~~~ePGH~fEW~~Lll~ 251 (388)
T COG2942 172 GSNPHMHLLEAMLAAYEATGEKTWLDRADRIADLIISRFADAESGLVREHFDHDWNPAHGFRGRGIEPGHQFEWAWLLLD 251 (388)
T ss_pred CCCcchHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHhhhcccCcHhhhccccCCcCCCcccCCCCCchHHHHHHHHHH
Confidence 21 45788888999999999999987653 2233321110000 0010111111111 022 34
Q ss_pred HHHHhCChHHHHHHHHHHHHhcccCe-EeecCCCC--CCCCCCCccccccCCcCccccchhhHHHHHHHHHHccCC-cch
Q 043003 349 RYELTGDEQSMAMGTFFMDIINSSHS-YATGGTSH--QEFWTDPKRIATALSAETEESCTTYNMLKVSRYLFKWTK-QVT 424 (855)
Q Consensus 349 ~Y~~TGD~~y~~aa~~fwd~V~~~~~-Y~TGG~g~--~E~f~~~~~l~~~l~~~~~ETCat~nmlkl~~~Lf~~tg-d~~ 424 (855)
..+..++......|+..+++...+-. =.+||..- .-.+.. .+ ...=.=...+.|+-+-.|...++ +.+
T Consensus 252 ~a~~~~~~~l~~~A~~lf~~a~~~g~d~~~gg~~~sl~~D~~~-~d-------~~~r~WpQ~E~l~AA~ala~~~~~~~~ 323 (388)
T COG2942 252 IARRRGRAWLIEAARRLFDIAVADGWDPERGGAYYSLDDDGSP-HD-------RQQRLWPQTEALKAAVALAETTGARER 323 (388)
T ss_pred HHHHhchhHHHHHHHHHHHHHHHhccCcccCeEEEEecCCCCc-CC-------HHHhhChHHHHHHHHHHHHhcCCchHH
Confidence 46777887778888887777553221 12333321 111111 11 11111223344899999999999 999
Q ss_pred HHHHHHHHH
Q 043003 425 YADYYERAL 433 (855)
Q Consensus 425 YaD~~ERaL 433 (855)
|-+.+.|+.
T Consensus 324 y~~~~~R~~ 332 (388)
T COG2942 324 YWQWYARAW 332 (388)
T ss_pred HHHHHHHHH
Confidence 999999975
No 43
>KOG2244 consensus Highly conserved protein containing a thioredoxin domain [General function prediction only]
Probab=89.08 E-value=8.3 Score=45.55 Aligned_cols=142 Identities=22% Similarity=0.186 Sum_probs=86.8
Q ss_pred hHHHHHHHHHHHhCC-ChHHHHHHHHHHHHHHHHHhhC-------CCcccccCCchhhhhhhc-cccccccchh--hHHH
Q 043003 170 GHYLSATAMAWASTR-NETVKQKMDAVMSVLSECQKKI-------GTGYLSAFPSEFFDRLEN-LVYVWAPYYT--IHKI 238 (855)
Q Consensus 170 Gh~LsA~A~~~a~t~-D~~L~~k~d~~Vd~L~~~Q~~~-------~DGYL~a~~~~~~~r~~~-l~~~w~pyy~--~HkI 238 (855)
|--||++|.+++.++ ++++.+.+..+++.|.+.--.. +.=|.++-- +.+. .+..|+|-+. .-.+
T Consensus 508 GLviSgl~kag~~~~a~~~y~~~a~~~a~fl~k~m~d~~eklliR~scY~ga~g-----~ve~~n~~~~~~~FldDYAFl 582 (786)
T KOG2244|consen 508 GLVISGLAKAGKILKAEPEYTKYAFPVANFLPKDMIDVAEKLLIRGSCYDGASG-----RVEHSNRPSKAPAFLDDYAFL 582 (786)
T ss_pred chhhHHHHHHHHHhhcCHHHHHHHHHHHhhhhhhhhchhhhheeecccccCCCc-----ceeccCCccccchhhhhHHHH
Confidence 788999999998876 4588888888888776543211 122333221 1121 2356665221 2236
Q ss_pred HHHHHHHHHHhCChhHHHHHHHHHHHHHHHhhh---h-hhccchhhhcccccc-----cccc---hHHHHHHHHHhcCCH
Q 043003 239 MAGLLDQYTLANNGQALNITIWMADYFNTRVQN---L-IARSSLERHYQTLND-----ESGG---MNDVLYKLYGITKDP 306 (855)
Q Consensus 239 ~aGLld~Y~~TG~~kaL~ia~r~AD~~~~r~~~---~-~~~~~~~~~~~~l~~-----E~GG---mneaL~~LY~~TGd~ 306 (855)
..||+|.|+.+|+-..|+-|+++-|=..+-|-+ + +....++..-.-+.+ |--| -.--|++||.+++.+
T Consensus 583 I~gLLDlYea~~~~e~LkwA~~LQdtqdklFWdgggYF~Se~~~~~v~vRlkeDhDGAEPs~nSVsahNLvrL~~~~~~e 662 (786)
T KOG2244|consen 583 ISGLLDLYEAGGGIEWLKWAIKLQDTQDKLFWDGGGYFISEKTDEDVSVRLKEDHDGAEPSGNSVSAHNLVRLASIVAAE 662 (786)
T ss_pred HHHHHHHHHccCchHHHHHHHHHHHHHHHheecCCceeeeeccCCCcceeeccccCCCCCCccchhhhhHHHHHHHhhHH
Confidence 789999999999999999999998866654421 0 000000000000111 1111 124689999999999
Q ss_pred HHHHHHHhcc
Q 043003 307 KHLKLAELFD 316 (855)
Q Consensus 307 ryL~LA~~F~ 316 (855)
.||+-|.++.
T Consensus 663 ~yl~ka~~ll 672 (786)
T KOG2244|consen 663 SYLNKAHRLL 672 (786)
T ss_pred HHHHHHHHHH
Confidence 9999998764
No 44
>KOG2429 consensus Glycosyl hydrolase, family 47 [Carbohydrate transport and metabolism]
Probab=88.20 E-value=2 Score=50.67 Aligned_cols=79 Identities=18% Similarity=0.211 Sum_probs=47.0
Q ss_pred cchhhHhHHHhcCCCCCCC-CCCCcccCCcc---cccchhhHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhCCCc
Q 043003 134 VDRLVWSFRKTAGLPTPGA-PYGGWEDQKME---LRGHFLGHYLSATAMAWASTRNETVKQKMDAVMSVLSECQKKIGTG 209 (855)
Q Consensus 134 ~drLL~nFR~~AGl~~~g~-~~gGWe~~dsd---lrGH~~Gh~LsA~A~~~a~t~D~~L~~k~d~~Vd~L~~~Q~~~~DG 209 (855)
.+|||--|+..-|+|=+-. -..||.-..+. ..| .|-.|=-.+.+-+-|||+.+++-+.+.++.|-+... +-|
T Consensus 161 A~RLLPAF~T~TGiPy~~vNLk~GV~~~Et~~tctAg--~gslllEFg~LSrLTGD~~fE~vA~~A~~~lW~~RS--~ig 236 (622)
T KOG2429|consen 161 ARRLLPAFETPTGIPYGRVNLKYGVDKGETTETCTAG--AGSLLLEFGTLSRLTGDPKFEKVARRALDALWSLRS--GIG 236 (622)
T ss_pred HHhhcccccCCCCCCcceeehhcCCCCCCCcceeccc--ccceeeehhhhHHhhCCcHHHHHHHHHHHHHHhhcC--CCC
Confidence 5677777876667652100 01244322110 011 233333333444569999999999999999999888 777
Q ss_pred ccccCCc
Q 043003 210 YLSAFPS 216 (855)
Q Consensus 210 YL~a~~~ 216 (855)
-+|..-.
T Consensus 237 LlGn~id 243 (622)
T KOG2429|consen 237 LLGNHID 243 (622)
T ss_pred cccceee
Confidence 7776543
No 45
>PF01532 Glyco_hydro_47: Glycosyl hydrolase family 47; InterPro: IPR001382 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 47 GH47 from CAZY comprises enzymes with only one known activity; alpha-mannosidase (3.2.1.113 from EC). Alpha-mannosidase is involved in the maturation of Asn-linked oligo-saccharides []. The enzyme hydrolyses terminal 1,2-linked alpha-D-mannose residues in the oligo-mannose oligosaccharide man(9)(glcnac)(2) in a calcium-dependent manner. The mannose residues are trimmed away to produce, first, man(8)glcnac(2), then a man(5)(glcnac)(2) structure.; GO: 0004571 mannosyl-oligosaccharide 1,2-alpha-mannosidase activity, 0005509 calcium ion binding, 0016020 membrane; PDB: 2RI9_A 2RI8_B 1KRE_B 1KKT_A 1KRF_A 1NXC_A 1G6I_A 1DL2_A 1HCU_A 1FO2_A ....
Probab=87.84 E-value=2.3 Score=49.84 Aligned_cols=262 Identities=10% Similarity=-0.006 Sum_probs=129.1
Q ss_pred hhhHHHHHHHHHHHhC--CChHHHHHHHHHHHHHHHHHhhCCCcccccCC--ch-hhhhhhccccccccchhhHHHHHHH
Q 043003 168 FLGHYLSATAMAWAST--RNETVKQKMDAVMSVLSECQKKIGTGYLSAFP--SE-FFDRLENLVYVWAPYYTIHKIMAGL 242 (855)
Q Consensus 168 ~~Gh~LsA~A~~~a~t--~D~~L~~k~d~~Vd~L~~~Q~~~~DGYL~a~~--~~-~~~r~~~l~~~w~pyy~~HkI~aGL 242 (855)
+.-.+|.++--+|..+ +|+.|.+|+.++.|.|..+-+. ++|.--+.. .. ...++......=+-.=+.. ++ +
T Consensus 78 t~iR~lGgLLSay~ls~~~d~~lL~kA~~lad~Ll~aF~t-~~g~P~~~~n~~~~~~~~~~~~~~~la~~gs~~-lE--f 153 (452)
T PF01532_consen 78 TTIRVLGGLLSAYDLSGEGDPILLSKAVELADRLLPAFDT-PTGIPYPRVNLRTGGKNRWPGGESSLAEAGSLQ-LE--F 153 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGSS-SSS---SEEETTTCEEETTCCGEEEHHHHCSSH-HH--H
T ss_pred hhhHhhhhhHHHHHHHhccchHHHHHHHHHHHHHHHhccC-CCccccceeeecccCCCCCCCCcccccccccce-ec--h
Confidence 4567888887777777 9999999999999999887752 455321110 00 0001111000000000111 12 2
Q ss_pred HHHHHHhCChhHHHHHHHHHHHHHHHh-----hhhhhccch--hhhcccccccccchH----HHHHHHHHhcC--CHHHH
Q 043003 243 LDQYTLANNGQALNITIWMADYFNTRV-----QNLIARSSL--ERHYQTLNDESGGMN----DVLYKLYGITK--DPKHL 309 (855)
Q Consensus 243 ld~Y~~TG~~kaL~ia~r~AD~~~~r~-----~~~~~~~~~--~~~~~~l~~E~GGmn----eaL~~LY~~TG--d~ryL 309 (855)
..-.++||+++..+.|.+..+.+.+.- ..+++..-+ ...|.....-.|++. |-|.+.|-++| |+.|+
T Consensus 154 ~~LS~lTgd~kY~~~a~~~~~~l~~~~~~~~~~gL~p~~id~~~g~~~~~~~~~Ga~~DS~YEYLlK~~lL~g~~d~~~~ 233 (452)
T PF01532_consen 154 TRLSQLTGDPKYFDAADRIYDALWRSQNRSKIPGLFPNFIDPSTGKWTSSSISLGAGGDSFYEYLLKMYLLLGGTDEQYR 233 (452)
T ss_dssp HHHHHHHS-THHHHHHHHHHHHHHCCCCCHSBTTB-BSEEETTTS-BSSTEE-SSTTTHHHHHHHHHHHHHTTTTTHHHH
T ss_pred hHHHHHhhccHHHHHHHHHHHHHHHhhhccCCcccCcceecCCcCcccccccccCCCcchHHHhhhhhhhhcCccchHHH
Confidence 345788999999999999999998721 112111000 011111111234443 67889999999 88887
Q ss_pred HHHHhccc---cc-cccccc---------cccC---CCCCCcccCcchHhHH-HHHH-HHHhCChHHHHHHHHHHHHhc-
Q 043003 310 KLAELFDK---PC-FLGLLA---------VKAD---NIAGLHANTHIPLVCG-VQNR-YELTGDEQSMAMGTFFMDIIN- 370 (855)
Q Consensus 310 ~LA~~F~~---~~-~~~~la---------~~~d---~l~g~HanthiP~~~G-~a~~-Y~~TGD~~y~~aa~~fwd~V~- 370 (855)
++=+...+ +. .+.+.. .... ...-.+..+|.-.+.| +..+ ...-+++.+++.|+...+.-.
T Consensus 234 ~~~~~a~~~i~~~Ll~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~hLsCF~pG~l~Lg~~~~~~~~~~~~A~~l~~~C~~ 313 (452)
T PF01532_consen 234 DMYDEAVDAIKKHLLFRPSTPGDYDLLFLGEYSTGGGGRLSPKMDHLSCFLPGMLALGAKLFNDEGDLELAEELTETCYW 313 (452)
T ss_dssp HHHHHHHHHHHHHTEEEBTTTT--T-EEE-EEETTTTTEEESEEECGGGGHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccCCCCCccceeEeeeeecccCccccccccchhhcchhHHHHhhcccCchhHHHHHHHHHHHHHH
Confidence 76443321 11 011000 0000 0011123345555543 3333 234477888888776666532
Q ss_pred ccCeEeecCCCCCCCCCCCcc-----c---cccCCcCccccchhhHHHHHHHHHHccCCcchHHHHHHHHH
Q 043003 371 SSHSYATGGTSHQEFWTDPKR-----I---ATALSAETEESCTTYNMLKVSRYLFKWTKQVTYADYYERAL 433 (855)
Q Consensus 371 ~~~~Y~TGG~g~~E~f~~~~~-----l---~~~l~~~~~ETCat~nmlkl~~~Lf~~tgd~~YaD~~ERaL 433 (855)
-.+.+.||.....=.|.+... - ...+........-.-+.+.+.-+|+++|||++|-|.-..++
T Consensus 314 ~y~~~~tGl~PE~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~LRPE~iES~fylyR~TgD~~yre~gw~if 384 (452)
T PF01532_consen 314 LYKSTPTGLGPEIFSFDPCEENCQWDEERKDFMIKISDPRYLLRPETIESLFYLYRATGDPKYREWGWDIF 384 (452)
T ss_dssp HHHTSSSSS--SEEEESCSCG--TEETGGCSCCHHGGG--B-S--HHHHHHHHHHHHH-BHHHHHHHHHHH
T ss_pred HHHhcccCCCceEEEeeccccccccchhhcccccccccccccchhhhhhheeEEEEEcCCchHHHHHHHHH
Confidence 233445555432112221100 0 00000011122223467888899999999999999987653
No 46
>PLN02171 endoglucanase
Probab=87.48 E-value=17 Score=44.57 Aligned_cols=125 Identities=10% Similarity=0.038 Sum_probs=65.4
Q ss_pred hHHHHHHHHHHHHHHHHHhhCCCcccccCC-c-----hhhhh---hhccccccc-----cch-hhHHHHHHHHHHHHHhC
Q 043003 186 ETVKQKMDAVMSVLSECQKKIGTGYLSAFP-S-----EFFDR---LENLVYVWA-----PYY-TIHKIMAGLLDQYTLAN 250 (855)
Q Consensus 186 ~~L~~k~d~~Vd~L~~~Q~~~~DGYL~a~~-~-----~~~~r---~~~l~~~w~-----pyy-~~HkI~aGLld~Y~~TG 250 (855)
+.+++.++.-.|.|.+||. ++|-+-.-- . ..+.+ ....|.+.. |=- .--.+-|+|..+++.-.
T Consensus 116 ~~~Ldeikw~~Dyllk~~~--~~~~~y~qVgdg~~DH~~W~~Pe~~~~~R~~y~i~~~~pgSd~a~e~AAAlAaaS~vfk 193 (629)
T PLN02171 116 GHAMDAVKWGTDYFIKAHP--EPNVLYGEVGDGDTDHYCWQRPEDMTTDRQAYRIDPQNPGSDLAGETAAAMAAASIVFR 193 (629)
T ss_pred HHHHHHHHHHHHHHHHhcc--CCCeEEEEeCCCCccccCcCChhHccccceeEEecCCCCchHHHHHHHHHHHHHHHhcc
Confidence 5677888889999999997 433221100 0 00000 001111110 100 11223466666666655
Q ss_pred C------hhHHHHHHHHHHHHHHHhhhhhhccch-hhhcc---cccccccchHHHHHHHHHhcCCHHHHHHHHhc
Q 043003 251 N------GQALNITIWMADYFNTRVQNLIARSSL-ERHYQ---TLNDESGGMNDVLYKLYGITKDPKHLKLAELF 315 (855)
Q Consensus 251 ~------~kaL~ia~r~AD~~~~r~~~~~~~~~~-~~~~~---~l~~E~GGmneaL~~LY~~TGd~ryL~LA~~F 315 (855)
+ ++.|+.|+++-+|..+.-+..-..... ..... ....| +.-+-+|||+.|||++||+.++..
T Consensus 194 ~~D~~YA~~lL~~Ak~ly~fA~~~~g~y~~~~~~~~~~Y~s~s~y~DE---l~WAAawLy~ATgd~~Yl~~~~~~ 265 (629)
T PLN02171 194 RSNPGYANELLTHAKQLFDFADKYRGKYDSSITVAQKYYRSVSGYGDE---LLWAAAWLYQATNNQYYLDYLGNN 265 (629)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHhCCCcccCCCcccCCccCCCCCccHH---HHHHHHHHHHHhCCHHHHHHHHHH
Confidence 4 468999999999887642210000000 00000 01122 445778999999999999987654
No 47
>PLN02266 endoglucanase
Probab=84.67 E-value=11 Score=44.92 Aligned_cols=127 Identities=12% Similarity=0.012 Sum_probs=67.7
Q ss_pred ChHHHHHHHHHHHHHHHHHhhCCCcccccCC-ch--hhhhhhc------cccccc-----cch-hhHHHHHHHHHHHHHh
Q 043003 185 NETVKQKMDAVMSVLSECQKKIGTGYLSAFP-SE--FFDRLEN------LVYVWA-----PYY-TIHKIMAGLLDQYTLA 249 (855)
Q Consensus 185 D~~L~~k~d~~Vd~L~~~Q~~~~DGYL~a~~-~~--~~~r~~~------l~~~w~-----pyy-~~HkI~aGLld~Y~~T 249 (855)
-+.+++.++.-+|.|.+||. .||-+-.-- +. ....|.. -|.+.. |=- ..-.+-|+|..++++-
T Consensus 129 ~pd~Ldelkw~~D~llk~~~--~~~~vy~qVg~~~~Dh~~W~~Pe~~~~~R~~y~i~~~~pgsd~a~e~AAALAaas~vf 206 (510)
T PLN02266 129 LQNAKDAIRWATDYLLKATA--HPDTIYVQVGDANKDHACWERPEDMDTPRSVFKVDKNTPGSDVAAETAAALAAASLVF 206 (510)
T ss_pred cHHHHHHHHHHHHHHHHhcc--CCCeEEEEeCCCCCCcccCCChhhcCCCCeeEEeCCCCCchHHHHHHHHHHHHHHHHh
Confidence 57889999999999999997 444332100 00 0001111 111110 000 1112346666667765
Q ss_pred CC------hhHHHHHHHHHHHHHHHhhhhhhccchhhhcccccccccc----hHHHHHHHHHhcCCHHHHHHHHhc
Q 043003 250 NN------GQALNITIWMADYFNTRVQNLIARSSLERHYQTLNDESGG----MNDVLYKLYGITKDPKHLKLAELF 315 (855)
Q Consensus 250 G~------~kaL~ia~r~AD~~~~r~~~~~~~~~~~~~~~~l~~E~GG----mneaL~~LY~~TGd~ryL~LA~~F 315 (855)
.+ ++.|+.|+++-+|..+.-+.. .. .........-...+| +.-+-+|||+.|||++||+.++..
T Consensus 207 k~~D~~yA~~~L~~Ak~ly~fa~~~~g~y-~~-~~~~~~~~~y~s~s~~~DEl~WAAawLy~ATGd~~Yl~~~~~~ 280 (510)
T PLN02266 207 RKSDPTYSKLLVRRAIRVFQFADKYRGAY-SN-GLKPDVCPFYCSYSGYQDELLWGAAWLHKATKNPTYLNYIQVN 280 (510)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHhCCCCc-cC-CCCcccCCCcccCCcchHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 54 468999999999887642211 00 000000011111122 344778999999999999987654
No 48
>PLN02909 Endoglucanase
Probab=83.49 E-value=16 Score=43.30 Aligned_cols=121 Identities=15% Similarity=0.060 Sum_probs=68.3
Q ss_pred CChHHHHHHHHHHHHHHHHHhhCCCcccccC-Cchhh--hhhh---ccccccccchh----------hHHHHHHHHHHHH
Q 043003 184 RNETVKQKMDAVMSVLSECQKKIGTGYLSAF-PSEFF--DRLE---NLVYVWAPYYT----------IHKIMAGLLDQYT 247 (855)
Q Consensus 184 ~D~~L~~k~d~~Vd~L~~~Q~~~~DGYL~a~-~~~~~--~r~~---~l~~~w~pyy~----------~HkI~aGLld~Y~ 247 (855)
+-+.+++.++.-+|.|.+||. .+|-+-.- -...+ ..|. ..... -|.|. --.+-|+|..+++
T Consensus 118 ~~~d~ldeikw~~D~llk~~~--~~~~~y~qVg~~~~Dh~~W~~Pe~~~~~-R~~~~i~~~~pgtd~a~~~AAAlA~as~ 194 (486)
T PLN02909 118 ELENVRAAIRWGTDYFLKAAS--RKNRLYVQVGDPNLDHQCWVRPENMKTP-RTVLEIDEKTPGTEIAAETAAAMAASSM 194 (486)
T ss_pred ChHHHHHHHHHHHHHHHHhcc--CCCeEEEEeCCCCCCcccCCChhhccCC-ceeEecCCCCCCcHHHHHHHHHHHHHHH
Confidence 347889999999999999998 55533211 00000 0111 11000 01121 2234456666676
Q ss_pred HhCC------hhHHHHHHHHHHHHHHHhhhhhhccchhh-hc---ccccccccchHHHHHHHHHhcCCHHHHHHHHh
Q 043003 248 LANN------GQALNITIWMADYFNTRVQNLIARSSLER-HY---QTLNDESGGMNDVLYKLYGITKDPKHLKLAEL 314 (855)
Q Consensus 248 ~TG~------~kaL~ia~r~AD~~~~r~~~~~~~~~~~~-~~---~~l~~E~GGmneaL~~LY~~TGd~ryL~LA~~ 314 (855)
+-.+ ++.|+.|+++-+|..+.-+. ++... .. .....| +.-+-+|||+.|||++||+.++.
T Consensus 195 vfk~~D~~yA~~lL~~Ak~~y~fA~~~~g~----y~~~~~~y~s~s~y~DE---l~WAAawLy~aTgd~~Yl~~~~~ 264 (486)
T PLN02909 195 VFRHVDHKYSRRLLNKAKLLFKFAKAHKGT----YDGECPFYCSYSGYNDE---LLWAATWLYKATKKQMYLKYIKH 264 (486)
T ss_pred hhccCCHHHHHHHHHHHHHHHHHHHhCCCC----cCCCCCccccCCCcchH---HHHHHHHHHHHhCCHHHHHHHHh
Confidence 6554 46899999999988764221 11100 00 001122 45577899999999999997664
No 49
>PF05147 LANC_like: Lanthionine synthetase C-like protein; InterPro: IPR007822 The LanC-like protein superfamily encompasses a highly divergent group of peptide-modifying enzymes, including the eukaryotic and bacterial lanthionine synthetase C-like proteins (LanC) [, , ]; subtilin biosynthesis protein SpaC from Bacillus subtilis [, ]; epidermin biosynthesis protein EpiC from Staphylococcus epidermidis []; nisin biosynthesis protein NisC from Lactococcus lactis [, , ]; GCR2 from Arabidopsis thaliana []; and many others. The 3D structure of the lantibiotic cyclase from L. lactis has been determined by X-ray crystallography to 2.5A resolution []. The globular structure is characterised by an all-alpha fold, in which an outer ring of helices envelops an inner toroid composed of 7 shorter, hydrophobic helices. This 7-fold hyrophobic periodicity has led several authors to claim various members of the family, including eukaryotic LanC-1 and GCR2, to be novel G protein-coupled receptors [, ]; some of these claims have since been corrected [, , ]. ; PDB: 3E6U_D 3E73_B 2G0D_A 2G02_A.
Probab=82.81 E-value=1.8 Score=48.04 Aligned_cols=174 Identities=16% Similarity=0.148 Sum_probs=94.2
Q ss_pred HHhCCChHHHHHHHHHHHHHHHHHhhCCCcccccCCchhhhhhh-c---cccccccchhhHHHHHHHHHHH-HHhCChhH
Q 043003 180 WASTRNETVKQKMDAVMSVLSECQKKIGTGYLSAFPSEFFDRLE-N---LVYVWAPYYTIHKIMAGLLDQY-TLANNGQA 254 (855)
Q Consensus 180 ~a~t~D~~L~~k~d~~Vd~L~~~Q~~~~DGYL~a~~~~~~~r~~-~---l~~~w~pyy~~HkI~aGLld~Y-~~TG~~ka 254 (855)
+..++++.+.+.+..+++.|.+... ... .. ..+....|. . +--.|- .+| |+.+|..+| +.+++++.
T Consensus 119 ~~~~~~~~~l~~i~~~~~~l~~~~~--~~~-~~--~~~~~~~~~~~~~~~G~aHG--~~G--i~~~L~~~~~~~~~~~~~ 189 (355)
T PF05147_consen 119 YEKTKDPKYLDIIEKILEKLLESII--NDD-PS--ENQIGSEWKEGFINLGFAHG--IAG--ILYALLRLYKKGTKDPEY 189 (355)
T ss_dssp HHHHCCHHS-HHHHHHHHHCCCHHC--CCH-TC--CGSSSHHCHTTBEE-STTTS--HHH--HHHHHCHCCHHT--HHHH
T ss_pred HhhccchHHHHHHHHHHHHHHHHHh--hcc-cc--cCCCccccCCCCccCCcccc--HHH--HHHHHHHhhhcccCchhH
Confidence 3445788888888888888776665 211 00 001112221 1 001111 122 445566677 58899999
Q ss_pred HHHHHHHHHHHHHHhhhhhhccc----hh-----hhccccccccc--chHHHHHHHHHhcCCHHHHHHHHhccccccccc
Q 043003 255 LNITIWMADYFNTRVQNLIARSS----LE-----RHYQTLNDESG--GMNDVLYKLYGITKDPKHLKLAELFDKPCFLGL 323 (855)
Q Consensus 255 L~ia~r~AD~~~~r~~~~~~~~~----~~-----~~~~~l~~E~G--GmneaL~~LY~~TGd~ryL~LA~~F~~~~~~~~ 323 (855)
++++.+..+|+.+.....-..+. .. ..|. +| ||..++.++++.++++.+.+.++.+.....-..
T Consensus 190 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WC-----~G~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (355)
T PF05147_consen 190 LKLIEQILNFLLKHFNTDDGGWPDNRNNSNYKSRPSWC-----YGSPGILLALLKAYKILDDEEYDEEAEQALESILQKG 264 (355)
T ss_dssp HHCHHHHHHHHHHC--TGCCT--SECTHHHHHC--SSS-----SSHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhcCcccCCCCCCCCccccccccccc-----cCcHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcc
Confidence 99999999999887632101111 01 1121 33 688999999999999999999887654221000
Q ss_pred cccccCCCCCCcccCcchHhHHHHHHHHHhCChHHHHHHHHHHHHhcc
Q 043003 324 LAVKADNIAGLHANTHIPLVCGVQNRYELTGDEQSMAMGTFFMDIINS 371 (855)
Q Consensus 324 la~~~d~l~g~HanthiP~~~G~a~~Y~~TGD~~y~~aa~~fwd~V~~ 371 (855)
. ......-.|- ..=++.-+..+|+.++++.|++.++.+++.+.+
T Consensus 265 ~--~~~~~~lCHG--~aG~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (355)
T PF05147_consen 265 L--FLNNPSLCHG--TAGILEILLDLYKYTGDEEYKELANKLIQKLLS 308 (355)
T ss_dssp T--CTTSS-STTS--HHHHHHHHHHHHHHH--HCCHHHHHHHHHHHCT
T ss_pred c--cCCCCceeCc--hHHhHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 0 0000011121 111122346779999999999999999998874
No 50
>PLN02340 endoglucanase
Probab=81.75 E-value=17 Score=44.33 Aligned_cols=171 Identities=14% Similarity=0.065 Sum_probs=86.5
Q ss_pred hHHHhcCCCCCCC-----CCCCcccCCcccc-cchhhHHHHHHHHHHHh--------CCChHHHHHHHHHHHHHHHHHhh
Q 043003 140 SFRKTAGLPTPGA-----PYGGWEDQKMELR-GHFLGHYLSATAMAWAS--------TRNETVKQKMDAVMSVLSECQKK 205 (855)
Q Consensus 140 nFR~~AGl~~~g~-----~~gGWe~~dsdlr-GH~~Gh~LsA~A~~~a~--------t~D~~L~~k~d~~Vd~L~~~Q~~ 205 (855)
++|..+++.. |. -.|||...+--++ |--.+.-...+++.+.. .+-+.+++.++.-.|.|.+||.
T Consensus 57 ~WR~ds~l~D-g~~~~~DlsGGwyDAGD~vKf~~p~a~t~t~L~w~~~ef~~~~~~~~~~~~~ldeirw~~Dyllk~~~- 134 (614)
T PLN02340 57 KWRGDSGLKD-GFLQGVDLVGGYYDAGDHVKFGLPMAFAVTMLSWGAVDFRKEITALNQMQRTLWAIRWGTDYFIKAHT- 134 (614)
T ss_pred cccccccCCC-cccccCCCCCCceeCCCcceecchhHHHHHHHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHHHHhcC-
Confidence 4666666653 21 3489965432111 11123334444444432 2347888899999999999987
Q ss_pred CCCcccccCC------chhhhhhhc---cccccc-----cch-hhHHHHHHHHHHHHHhCC------hhHHHHHHHHHHH
Q 043003 206 IGTGYLSAFP------SEFFDRLEN---LVYVWA-----PYY-TIHKIMAGLLDQYTLANN------GQALNITIWMADY 264 (855)
Q Consensus 206 ~~DGYL~a~~------~~~~~r~~~---l~~~w~-----pyy-~~HkI~aGLld~Y~~TG~------~kaL~ia~r~AD~ 264 (855)
.++-+-.-- -..+.+=|. .|..+. |=- .---+-|+|.+++++-.+ ++.|+.|+++-+|
T Consensus 135 -~~~~~~~qVGdg~~DH~~W~~PE~~~~~R~~y~i~~~~pgSd~a~e~AAAlAaas~vfk~~D~~YA~~lL~~Ak~ly~f 213 (614)
T PLN02340 135 -QPNVLWGQVGDGDSDHYCWERAEDMTTPRTAYKLDQNHPGSDLAGETAAALAAASKAFKPYNSSYSDLLLVHAKQLFSF 213 (614)
T ss_pred -CCCeEEEEeCCCCcccccCCChhhcCCcCceeecCCCCCccHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Confidence 333221100 001111111 111110 100 011234566566665543 4689999999999
Q ss_pred HHHHhhhhhhccchhh-hcc--cccccccchHHHHHHHHHhcCCHHHHHHHHhcc
Q 043003 265 FNTRVQNLIARSSLER-HYQ--TLNDESGGMNDVLYKLYGITKDPKHLKLAELFD 316 (855)
Q Consensus 265 ~~~r~~~~~~~~~~~~-~~~--~l~~E~GGmneaL~~LY~~TGd~ryL~LA~~F~ 316 (855)
..+.-+..-....... ... ....| +.-+-+|||+.|||++||+.+....
T Consensus 214 A~~~~g~y~~s~~~a~~~Y~ss~~~DE---l~WAAawLy~ATgd~~Yl~~~~~~~ 265 (614)
T PLN02340 214 ADKFRGLYDDSIQNAKKFYTSSGYSDE---LLWAAAWLYRATGDEYYLKYVVDNA 265 (614)
T ss_pred HHhCCCCccCCCCccccCCCCCCcchH---HHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 8764321100000000 000 01122 4457789999999999999887653
No 51
>COG4833 Predicted glycosyl hydrolase [Carbohydrate transport and metabolism]
Probab=79.05 E-value=3.4 Score=44.82 Aligned_cols=189 Identities=11% Similarity=-0.002 Sum_probs=104.7
Q ss_pred ccccccccchhhHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHh-hh-hhhccchhhhcccccccccchHHHHHHHHH
Q 043003 224 NLVYVWAPYYTIHKIMAGLLDQYTLANNGQALNITIWMADYFNTRV-QN-LIARSSLERHYQTLNDESGGMNDVLYKLYG 301 (855)
Q Consensus 224 ~l~~~w~pyy~~HkI~aGLld~Y~~TG~~kaL~ia~r~AD~~~~r~-~~-~~~~~~~~~~~~~l~~E~GGmneaL~~LY~ 301 (855)
.+..+|--|+-.|++.. ++|+|+.+-.+-=++.+.+..-....|- +. .++.+-++..| ...++.++|.
T Consensus 38 ~lf~~whYWWqAHlldc-lvDA~lR~~~~Arr~ri~~T~r~~~vRN~G~l~shdyYDDmaW---------lALAl~Ra~K 107 (377)
T COG4833 38 RLFGSWHYWWQAHLLDC-LVDAQLRDPQPARRARINRTVRSHRVRNFGWLNSHDYYDDMAW---------LALALERADK 107 (377)
T ss_pred HhhhhHHHHHHHHHHHH-HHHHHhcCCcHhHHHHHHHHHhhhhccccccccchhhhhhHHH---------HHHHHHhhhc
Confidence 35567888889999988 7899999998888888888766554432 22 22334344445 3469999999
Q ss_pred hcC---CHHHHHHHHhcccccccccc----ccccCCCCCCcccCcchHhHHHHHHHHHhCChHHHH----HHHHHHHHhc
Q 043003 302 ITK---DPKHLKLAELFDKPCFLGLL----AVKADNIAGLHANTHIPLVCGVQNRYELTGDEQSMA----MGTFFMDIIN 370 (855)
Q Consensus 302 ~TG---d~ryL~LA~~F~~~~~~~~l----a~~~d~l~g~HanthiP~~~G~a~~Y~~TGD~~y~~----aa~~fwd~V~ 370 (855)
.|| .+..+.+-+.|++-+ .|.+ .+.. ......+...-|.++=+++.|..- .++++ ..+-..++++
T Consensus 108 v~gvr~~~alp~l~~~~v~Gw-~D~~gGg~pWR~-q~~f~N~P~NgPa~I~~ar~~~~~--~krL~~AMK~~dWi~~~Li 183 (377)
T COG4833 108 VAGVRRRRALPKLTNQFVEGW-VDEDGGGIPWRK-QDQFFNAPANGPAGIFLARYPDQY--GKRLKRAMKMADWIDRTLI 183 (377)
T ss_pred ccceeccccchhHHHhhhhcc-ccccCCcccccc-cceeecCCCCCcceEEEeechHHH--HHHHHHHHHHHHHHHhhcc
Confidence 998 333444445554421 1211 1111 001112233556555455555332 23433 3444455567
Q ss_pred ccCeEeecCCCCCCCCCCCccccccCCcCccccchhhHHHHHHHHHHc-cCCcchHHHHHHHH
Q 043003 371 SSHSYATGGTSHQEFWTDPKRIATALSAETEESCTTYNMLKVSRYLFK-WTKQVTYADYYERA 432 (855)
Q Consensus 371 ~~~~Y~TGG~g~~E~f~~~~~l~~~l~~~~~ETCat~nmlkl~~~Lf~-~tgd~~YaD~~ERa 432 (855)
+...+|--|+-..|+-...++- ...||.-- .++ |..+-.|.+ .+.+++|.|.+-++
T Consensus 184 d~DGlV~DGi~~ledGt~lvr~----~~tYcQGV-~IG-le~~L~Lr~~~a~~A~Y~a~~h~~ 240 (377)
T COG4833 184 DPDGLVFDGIKALEDGTSLVRA----QYTYCQGV-VIG-LETELALRTGPAARARYCARVHRL 240 (377)
T ss_pred CCCcchhhhhhhhccCchhhee----ecccccee-Eee-chhhhhhhcCchHHHHHHHHHHHH
Confidence 7777777787766654332210 01222221 122 445555555 56677888777654
No 52
>PLN02420 endoglucanase
Probab=78.22 E-value=27 Score=41.88 Aligned_cols=168 Identities=11% Similarity=0.074 Sum_probs=83.5
Q ss_pred HHHhcCCCCCC----CCCCCcccCCccc-c-cchhhHHHHHHHHHHHh--------CCChHHHHHHHHHHHHHHHHHhhC
Q 043003 141 FRKTAGLPTPG----APYGGWEDQKMEL-R-GHFLGHYLSATAMAWAS--------TRNETVKQKMDAVMSVLSECQKKI 206 (855)
Q Consensus 141 FR~~AGl~~~g----~~~gGWe~~dsdl-r-GH~~Gh~LsA~A~~~a~--------t~D~~L~~k~d~~Vd~L~~~Q~~~ 206 (855)
+|..++++... .-.|||...+ |- + +--.+.-+..+++.|.. .+-+.+++.++.-+|.|.+||...
T Consensus 69 Wr~~s~~~Dg~~~~~DlsGGwyDAG-D~~Kf~~p~a~t~~~L~w~~~ef~d~~~~~g~~~d~Ldeikw~lD~llk~~~~~ 147 (525)
T PLN02420 69 WRDHSGLTDGLEQGVDLVGGYHDAG-DHVKFGLPMAFTVTMLSWSVIEYGDQLASTGELSHALEAIKWGTDYFIKAHTSP 147 (525)
T ss_pred ccccCcCcCCCcCcccCCCcceecC-ccceecchHHHHHHHHHHHHHHHHHhhhhcCCcHHHHHHHHHHHHHHHHhCcCC
Confidence 66666665311 1348886543 21 0 01123333334433332 234788999999999999999721
Q ss_pred -------CCccccc----CCchhhhhhhccccccc-----cchh-hHHHHHHHHHHHHHhCC------hhHHHHHHHHHH
Q 043003 207 -------GTGYLSA----FPSEFFDRLENLVYVWA-----PYYT-IHKIMAGLLDQYTLANN------GQALNITIWMAD 263 (855)
Q Consensus 207 -------~DGYL~a----~~~~~~~r~~~l~~~w~-----pyy~-~HkI~aGLld~Y~~TG~------~kaL~ia~r~AD 263 (855)
+||=..- -|++. ...|.+.. |--. .-.+-|+|-.+++.-.+ ++.|+.|+++-+
T Consensus 148 ~~~~~qvGdg~~DH~~w~~Pe~~----~~~R~~~~i~~~~pgsd~aa~~AAALA~AS~vfk~~D~~YA~~~L~~Ak~ly~ 223 (525)
T PLN02420 148 NVLWAEVGDGDTDHYCWQRPEDM----TTSRRAFKIDENNPGSDIAGETAAAMAAASIVFRSTNPHYSHLLLHHAQQLFE 223 (525)
T ss_pred CceEEeeCCCCcccccccChhhc----cccCceEEecCCCCccHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence 2221110 01110 01111110 1000 11233555556666554 368999999888
Q ss_pred HHHHHhhhhhhccch-hhh---cccccccccchHHHHHHHHHhcCCHHHHHHHHhcc
Q 043003 264 YFNTRVQNLIARSSL-ERH---YQTLNDESGGMNDVLYKLYGITKDPKHLKLAELFD 316 (855)
Q Consensus 264 ~~~~r~~~~~~~~~~-~~~---~~~l~~E~GGmneaL~~LY~~TGd~ryL~LA~~F~ 316 (855)
|..+.-+..-..... ... +.....| +.-+-+|||+.|||++||+.|....
T Consensus 224 fA~~~~g~y~~~~~~~~g~Y~s~s~y~DE---l~WAAawLY~ATgd~~Yl~~a~~~~ 277 (525)
T PLN02420 224 FGDKYRGKYDESLKVVKSYYASVSGYMDE---LLWGATWLYRATDNEHYMSYVVDMA 277 (525)
T ss_pred HHHhcCCccCCCCcccCCCCCCcCcccHH---HHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 887532211000000 000 0001122 4457799999999999999886543
No 53
>PLN02613 endoglucanase
Probab=76.37 E-value=23 Score=42.31 Aligned_cols=121 Identities=12% Similarity=0.117 Sum_probs=66.8
Q ss_pred CChHHHHHHHHHHHHHHHHHhh-------CCCcccc-cC---Cchhhhhhhccccccc-----cchh-hHHHHHHHHHHH
Q 043003 184 RNETVKQKMDAVMSVLSECQKK-------IGTGYLS-AF---PSEFFDRLENLVYVWA-----PYYT-IHKIMAGLLDQY 246 (855)
Q Consensus 184 ~D~~L~~k~d~~Vd~L~~~Q~~-------~~DGYL~-a~---~~~~~~r~~~l~~~w~-----pyy~-~HkI~aGLld~Y 246 (855)
+.+.+++.++.-.|.|.+||.. .+||-.. .+ |++. ...|.+.. |--. .-.+-|+|..++
T Consensus 110 ~~~d~ldeikw~lD~llkm~~~~~~~~~QVGdg~~dH~~W~~Pe~~----~~~R~~~~~t~~~pgTd~a~~~AAALAaas 185 (498)
T PLN02613 110 QLGYLRSAIRWGTDFILRAHTSPTTLYTQVGDGNADHQCWERPEDM----DTPRTLYKITSSSPGSEAAGEAAAALAAAS 185 (498)
T ss_pred CchHHHHHHHHHHHHHHHhccCCCeEEEEeCCCCccccccCCcccc----CCCCeeEecCCCCCccHHHHHHHHHHHHHH
Confidence 4578999999999999999862 1344211 00 1110 00111111 1000 112345666666
Q ss_pred HHhCC------hhHHHHHHHHHHHHHHHhhhhhhccchhhhc----ccccccccchHHHHHHHHHhcCCHHHHHHHHhc
Q 043003 247 TLANN------GQALNITIWMADYFNTRVQNLIARSSLERHY----QTLNDESGGMNDVLYKLYGITKDPKHLKLAELF 315 (855)
Q Consensus 247 ~~TG~------~kaL~ia~r~AD~~~~r~~~~~~~~~~~~~~----~~l~~E~GGmneaL~~LY~~TGd~ryL~LA~~F 315 (855)
+.-.+ ++.|+.|+++-+|..+.-+. +...... .....| +.-+-+|||+.|||++||+.++..
T Consensus 186 ~vfk~~D~~yA~~~L~~Ak~ly~~a~~~~g~----y~~~~~~y~s~s~~~DE---l~WAAawLy~aTGd~~Yl~~~~~~ 257 (498)
T PLN02613 186 LVFKDVDSSYSSKLLNHARSLFEFADKYRGS----YQASCPFYCSYSGYQDE---LLWAAAWLYKATGEKKYLNYVISN 257 (498)
T ss_pred HhcccCCHHHHHHHHHHHHHHHHHHHhCCCC----cCCCCCcccccCccchH---HHHHHHHHHHHhCCHHHHHHHHhc
Confidence 66554 36899999998888764211 1110000 001112 345778999999999999987654
No 54
>PLN00119 endoglucanase
Probab=74.36 E-value=44 Score=39.83 Aligned_cols=125 Identities=8% Similarity=-0.088 Sum_probs=67.1
Q ss_pred ChHHHHHHHHHHHHHHHHHhhCCCcccccCC-c--hhhhhhhc------cccccc-----cc-hhhHHHHHHHHHHHHHh
Q 043003 185 NETVKQKMDAVMSVLSECQKKIGTGYLSAFP-S--EFFDRLEN------LVYVWA-----PY-YTIHKIMAGLLDQYTLA 249 (855)
Q Consensus 185 D~~L~~k~d~~Vd~L~~~Q~~~~DGYL~a~~-~--~~~~r~~~------l~~~w~-----py-y~~HkI~aGLld~Y~~T 249 (855)
-+.+++.++.-.|.|.+||. .+|.+-.-- . .....|.. .|.++. |= -..-.+-|+|..+++.-
T Consensus 116 ~~~~lde~kw~~Dyllk~~~--~~~~~y~qVgdg~~DH~~W~~Pe~~~~~R~~y~i~~~~pgSd~a~~~AAAlA~as~vf 193 (489)
T PLN00119 116 LGNALAALKWATDYLIKAHP--QPNVLYGQVGDGNSDHACWMRPEDMTTPRTSYRIDAQHPGSDLAGETAAAMAAASIAF 193 (489)
T ss_pred cHHHHHHHHHHHHHHHHhcC--CCCeEEEEeccCCCcccccCChhhCCCcCceeecCCCCCchHHHHHHHHHHHHHHHHc
Confidence 35788888999999999997 444332110 0 00011211 111110 10 01123446666666665
Q ss_pred CC------hhHHHHHHHHHHHHHHHhhhhhhc-cchhhhcc---cccccccchHHHHHHHHHhcCCHHHHHHHHhc
Q 043003 250 NN------GQALNITIWMADYFNTRVQNLIAR-SSLERHYQ---TLNDESGGMNDVLYKLYGITKDPKHLKLAELF 315 (855)
Q Consensus 250 G~------~kaL~ia~r~AD~~~~r~~~~~~~-~~~~~~~~---~l~~E~GGmneaL~~LY~~TGd~ryL~LA~~F 315 (855)
.+ ++.|+.|+++-+|..+.-+. ... ........ ....| +.-+-+|||+.|||+.|++.++..
T Consensus 194 k~~D~~yA~~lL~~Ak~~y~fA~~~~g~-y~~~~~~~~g~Y~ss~~~DE---l~WAAawLY~aTgd~~Yl~~~~~~ 265 (489)
T PLN00119 194 APSDPAYASILIGHAKDLFEFAKAHPGL-YQNSIPNAGGFYASSGYEDE---LLWAAAWLHRATNDQTYLDYLTQA 265 (489)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHhCCCc-ccCCCCCCCCCCCCCchhhH---HHHHHHHHHHHhCCHHHHHHHHhc
Confidence 54 46899999998988764211 100 00000000 00112 445778999999999999987654
No 55
>KOG2430 consensus Glycosyl hydrolase, family 47 [Carbohydrate transport and metabolism]
Probab=73.75 E-value=22 Score=39.79 Aligned_cols=143 Identities=18% Similarity=0.357 Sum_probs=81.0
Q ss_pred CCCCcccCCcccccchhhHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhCCCcccccCCchhhhhhhccccccccc
Q 043003 153 PYGGWEDQKMELRGHFLGHYLSATAMAWASTRNETVKQKMDAVMSVLSECQKKIGTGYLSAFPSEFFDRLENLVYVWAPY 232 (855)
Q Consensus 153 ~~gGWe~~dsdlrGH~~Gh~LsA~A~~~a~t~D~~L~~k~d~~Vd~L~~~Q~~~~DGYL~a~~~~~~~r~~~l~~~w~py 232 (855)
+-|.|..-||.+ |--.--|-+=+-.+|...+|+.+.+|.+.--+.|.+ |++--|- |-. -.+|-|-
T Consensus 235 hsgdw~rkdsgi-gagidsyyey~lkayillgddsfldrfn~hydai~r--------yi~k~pi--~ld----vhihkp~ 299 (587)
T KOG2430|consen 235 HSGDWTRKDSGI-GAGIDSYYEYLLKAYILLGDDSFLDRFNKHYDAIKR--------YINKGPI--FLD----VHIHKPM 299 (587)
T ss_pred ccCcceecccCc-CcchHHHHHHHHHHhheeccHHHHHHHHHHHHHHHH--------HhcCCCe--EEE----Eecccch
Confidence 457898887765 333445666667778889999999999888887765 3332220 000 0123333
Q ss_pred hhhHHHHHHHHHHH----HHhCC-hhHHHHHHHHHHHHHHHhhh---hhhc--cchhhhcc--cccccccchHHHHHHHH
Q 043003 233 YTIHKIMAGLLDQY----TLANN-GQALNITIWMADYFNTRVQN---LIAR--SSLERHYQ--TLNDESGGMNDVLYKLY 300 (855)
Q Consensus 233 y~~HkI~aGLld~Y----~~TG~-~kaL~ia~r~AD~~~~r~~~---~~~~--~~~~~~~~--~l~~E~GGmneaL~~LY 300 (855)
-+..-.|.+|++.+ .+.|+ +.|+++ -..+...+.+ +.+. ...+-||. ++.+| ..|+-+-||
T Consensus 300 l~ar~~mdallaf~pglqvlkgdik~aie~----heml~qvikkh~flpeaft~df~vhwaehpirpe---faestyfly 372 (587)
T KOG2430|consen 300 LAARGFMDALLAFFPGLQVLKGDIKEAIEM----HEMLFQVIKKHKFLPEAFTHDFQVHWAEHPIRPE---FAESTYFLY 372 (587)
T ss_pred hhHhhHHHHHHHhCcchhhhccccHHHHHH----HHHHHHHHHHcccChHhhcccceeecccCCCChh---hhhhheeee
Confidence 33322334444322 12233 223333 3333332221 1111 11245673 56777 468999999
Q ss_pred HhcCCHHHHHHHHhccc
Q 043003 301 GITKDPKHLKLAELFDK 317 (855)
Q Consensus 301 ~~TGd~ryL~LA~~F~~ 317 (855)
+.|||+-||+.|+.+.+
T Consensus 373 kat~dp~yl~v~k~iid 389 (587)
T KOG2430|consen 373 KATGDPHYLEVAKQIID 389 (587)
T ss_pred cccCCchHHHHHHHHHH
Confidence 99999999999998765
No 56
>PF13243 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 3SAE_A 3SDV_A 3SDT_A 3SDQ_A 3SDU_A.
Probab=73.53 E-value=3.5 Score=37.87 Aligned_cols=79 Identities=14% Similarity=0.081 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhCCCcccccCCchhhhhhhccccccccchhhHHHHHHHHHHHHHhC
Q 043003 171 HYLSATAMAWASTRNETVKQKMDAVMSVLSECQKKIGTGYLSAFPSEFFDRLENLVYVWAPYYTIHKIMAGLLDQYTLAN 250 (855)
Q Consensus 171 h~LsA~A~~~a~t~D~~L~~k~d~~Vd~L~~~Q~~~~DGYL~a~~~~~~~r~~~l~~~w~pyy~~HkI~aGLld~Y~~TG 250 (855)
-...+++.++...+++...+.+++.++.|.++|. +||-.+..+.+. .+++-+. +....+++
T Consensus 27 ~~t~~~~~al~~~~~~~~~~ai~ka~~~l~~~Q~--~dG~w~~~~~~~------------~~~t~~~-----~~~l~~~~ 87 (109)
T PF13243_consen 27 FVTAALILALAAAGDAAVDEAIKKAIDWLLSHQN--PDGGWGYSGGEY------------VSMTAAA-----IAALALAG 87 (109)
T ss_dssp --------------TS-SSBSSHHHHHHHHH-----TTS--S-TS--H------------HHHHHHH-----HHHHHHHH
T ss_pred cccccccccccccCCCCcHHHHHHHHHHHHHhcC--CCCCCCCcCCCC------------HHHHHHH-----HHHHHHhC
Confidence 4445556666667788999999999999999999 898655332110 1233222 22333334
Q ss_pred ChhHHHHHHHHHHHHHHH
Q 043003 251 NGQALNITIWMADYFNTR 268 (855)
Q Consensus 251 ~~kaL~ia~r~AD~~~~r 268 (855)
...-.+.+.|..+||.++
T Consensus 88 ~~~~~~~~~r~~~wi~~~ 105 (109)
T PF13243_consen 88 VYPDDEAVERGLEWILSH 105 (109)
T ss_dssp TT--HHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHc
Confidence 444566678888898865
No 57
>COG4403 LcnDR2 Lantibiotic modifying enzyme [Defense mechanisms]
Probab=72.00 E-value=63 Score=40.78 Aligned_cols=155 Identities=18% Similarity=0.207 Sum_probs=88.4
Q ss_pred HHHhCCChHHHHHHHHHHHHHHHHHh-hCCCcccccCCchhhhhhhccccccccchhhHHHHHHHHHHHHHhCChhHHHH
Q 043003 179 AWASTRNETVKQKMDAVMSVLSECQK-KIGTGYLSAFPSEFFDRLENLVYVWAPYYTIHKIMAGLLDQYTLANNGQALNI 257 (855)
Q Consensus 179 ~~a~t~D~~L~~k~d~~Vd~L~~~Q~-~~~DGYL~a~~~~~~~r~~~l~~~w~pyy~~HkI~aGLld~Y~~TG~~kaL~i 257 (855)
+...|+...+++.+.+++..+.+.-+ .+-+==++++. +.=. ++-||.-.|.++++..+..-
T Consensus 659 L~~vtgk~~Y~~ia~~~L~~~~~sv~~~~~~~~iga~~-----------G~~g-------~~yal~~I~~~~~~~~l~~~ 720 (963)
T COG4403 659 LALVTGKDYYKEIAIKALQDSRKSVNNNLNPINIGAFT-----------GLSG-------YFYALWKIYSVTRDNYLIQS 720 (963)
T ss_pred HHHhcChHHHHHHHHHHHHHHHHhhhhccCCccccccc-----------ccch-------hhhhhHHHHHhcccHHHHHH
Confidence 33468999999998887777665433 11111112221 1111 12245667888999999998
Q ss_pred HHHHHHHHHHHhhhhhhccchhhhcccccccccchHHHHHHHHHhcCCHHHHHHHHhccccccccccccccCC----CCC
Q 043003 258 TIWMADYFNTRVQNLIARSSLERHYQTLNDESGGMNDVLYKLYGITKDPKHLKLAELFDKPCFLGLLAVKADN----IAG 333 (855)
Q Consensus 258 a~r~AD~~~~r~~~~~~~~~~~~~~~~l~~E~GGmneaL~~LY~~TGd~ryL~LA~~F~~~~~~~~la~~~d~----l~g 333 (855)
+.+.+-++...... .+....+++- .|..-+|+.+|+.|.++|.|++|.-.-+..+-+ ..+.|. +.|
T Consensus 721 ~~~~i~~le~~v~~-------~~~~d~i~Gl-~g~i~~L~~iYk~~~epk~l~~ais~~~~l~~~--~v~~d~s~~~l~g 790 (963)
T COG4403 721 AENSIRHLEILVQK-------SKDPDFINGL-AGVICVLVSIYKLTDEPKFLELAISLGRILMEK--IVGNDSSETVLLG 790 (963)
T ss_pred HHHHHHHHHHHHhh-------ccCcchhhcc-HHHHHHHHHHHhhccchHHHHHHHHHHHHHHHH--hhccccccceecc
Confidence 88888866554321 0011111111 135568999999999999999997664322100 011221 111
Q ss_pred -CcccCcchHhHHHHHHHHHhCChHHHHHHH
Q 043003 334 -LHANTHIPLVCGVQNRYELTGDEQSMAMGT 363 (855)
Q Consensus 334 -~HanthiP~~~G~a~~Y~~TGD~~y~~aa~ 363 (855)
-|-.+ -++..++.+|++|||+.+++..+
T Consensus 791 fshg~s--gi~~tL~~ly~~T~e~~l~~~i~ 819 (963)
T COG4403 791 FSHGAS--GIILTLLKLYEATGEESLLKKIK 819 (963)
T ss_pred cccchH--HHHHHHHHHHHhcCcHHHHHHHH
Confidence 12211 12345678899999999977655
No 58
>PF15095 IL33: Interleukin 33; PDB: 2KLL_A.
Probab=71.83 E-value=31 Score=36.63 Aligned_cols=84 Identities=18% Similarity=0.179 Sum_probs=46.1
Q ss_pred cceEEEEEEcCCCCCcccccccccCCcce--ecCCCCCCCcceecccCCcceEE---ecCCCCceEEEeecCCCCCCeEE
Q 043003 697 DANATFRLIGNDQRPINFTTVKNVISKQV--MFEPFDFPGKLLMQQGNNDSLVI---ANNPGNSVFQVNAGLDGKPDTVS 771 (855)
Q Consensus 697 ~~~~~fr~~~~~~~~~~~~~p~~~~g~~v--~lepfd~Pg~~v~~~~~~~~l~v---~~~~~~s~f~~vpgl~g~~~~vs 771 (855)
-=-..||.+.....| -.+.-+.+|+.+ .|.|-....-.+--...|+++.+ ++..+|+.|.+.--- ....||
T Consensus 157 KDKVLlryYeSq~pS--~esgdgvDGk~LMVnlSPtkdkDf~LHAN~keHSVeLqKcE~~lpdQaff~lh~~--ss~~vs 232 (268)
T PF15095_consen 157 KDKVLLRYYESQCPS--SESGDGVDGKKLMVNLSPTKDKDFLLHANNKEHSVELQKCENPLPDQAFFVLHKK--SSECVS 232 (268)
T ss_dssp ---EEEEEEE----T--TTS----S---EEEEEESS--SSEEEEEETTTTEEEEEE--SS--TTT-EEEEE---SSS-EE
T ss_pred cceEEEEeccCCCCc--ccCCCCccceEEEEEcCCccchheEEecCCccceeeeeecCCCCCcceeEEEecC--CCceeE
Confidence 445778876443322 133445677766 67888888877766667778887 354699888887433 357999
Q ss_pred EeecCCCCeEEEe
Q 043003 772 LESVSRKGCFVFS 784 (855)
Q Consensus 772 les~~~pg~~~~~ 784 (855)
||-.|+||.|+-+
T Consensus 233 feck~~pg~~igv 245 (268)
T PF15095_consen 233 FECKNNPGVFIGV 245 (268)
T ss_dssp EEESSSTTEEEEE
T ss_pred EEecCCCceEEee
Confidence 9999999999965
No 59
>PF05147 LANC_like: Lanthionine synthetase C-like protein; InterPro: IPR007822 The LanC-like protein superfamily encompasses a highly divergent group of peptide-modifying enzymes, including the eukaryotic and bacterial lanthionine synthetase C-like proteins (LanC) [, , ]; subtilin biosynthesis protein SpaC from Bacillus subtilis [, ]; epidermin biosynthesis protein EpiC from Staphylococcus epidermidis []; nisin biosynthesis protein NisC from Lactococcus lactis [, , ]; GCR2 from Arabidopsis thaliana []; and many others. The 3D structure of the lantibiotic cyclase from L. lactis has been determined by X-ray crystallography to 2.5A resolution []. The globular structure is characterised by an all-alpha fold, in which an outer ring of helices envelops an inner toroid composed of 7 shorter, hydrophobic helices. This 7-fold hyrophobic periodicity has led several authors to claim various members of the family, including eukaryotic LanC-1 and GCR2, to be novel G protein-coupled receptors [, ]; some of these claims have since been corrected [, , ]. ; PDB: 3E6U_D 3E73_B 2G0D_A 2G02_A.
Probab=71.04 E-value=14 Score=40.82 Aligned_cols=132 Identities=14% Similarity=0.158 Sum_probs=77.2
Q ss_pred hHHHHHHHHHHH-----hCCChHHHHHHHHHHHHHHHHHhhCCCcccccCCchhhhhhhccccccccchhhHH-HHHHHH
Q 043003 170 GHYLSATAMAWA-----STRNETVKQKMDAVMSVLSECQKKIGTGYLSAFPSEFFDRLENLVYVWAPYYTIHK-IMAGLL 243 (855)
Q Consensus 170 Gh~LsA~A~~~a-----~t~D~~L~~k~d~~Vd~L~~~Q~~~~DGYL~a~~~~~~~r~~~l~~~w~pyy~~Hk-I~aGLl 243 (855)
.|=+++.+++++ .+++++.++.+..+++.+.+.+....++|......+...+ +.. ||.|=. |..++.
T Consensus 166 aHG~~Gi~~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~---WC~G~~Gi~~~~~ 238 (355)
T PF05147_consen 166 AHGIAGILYALLRLYKKGTKDPEYLKLIEQILNFLLKHFNTDDGGWPDNRNNSNYKS----RPS---WCYGSPGILLALL 238 (355)
T ss_dssp TTSHHHHHHHHCHCCHHT--HHHHHHCHHHHHHHHHHC--TGCCT--SECTHHHHHC------S---SSSSHHHHHHHHH
T ss_pred cccHHHHHHHHHHhhhcccCchhHHHHHHHHHHHHHHhcCcccCCCCCCCCcccccc----ccc---cccCcHHHHHHHH
Confidence 455555444443 6678999999999999999988644556443332211100 122 343311 445567
Q ss_pred HHHHHhCChhHHHHHHHHHHHHHHHhhhhhhccchhhhcccc-cccccchHHHHHHHHHhcCCHHHHHHHHhccc
Q 043003 244 DQYTLANNGQALNITIWMADYFNTRVQNLIARSSLERHYQTL-NDESGGMNDVLYKLYGITKDPKHLKLAELFDK 317 (855)
Q Consensus 244 d~Y~~TG~~kaL~ia~r~AD~~~~r~~~~~~~~~~~~~~~~l-~~E~GGmneaL~~LY~~TGd~ryL~LA~~F~~ 317 (855)
.+++..+++...+.+.+.+..+.++-.. ..-..+ |+- .|+.+.|..+|+.|++++|.+.|+.+.+
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~lCHG~-aG~~~~l~~~~~~~~~~~~~~~~~~~~~ 304 (355)
T PF05147_consen 239 KAYKILDDEEYDEEAEQALESILQKGLF--------LNNPSLCHGT-AGILEILLDLYKYTGDEEYKELANKLIQ 304 (355)
T ss_dssp HHHHHCT-HHHHHHHHHHHHHHHHH-TC--------TTSS-STTSH-HHHHHHHHHHHHHH--HCCHHHHHHHHH
T ss_pred HHHHhhchHHHHHHHHHHHHHHHHcccc--------CCCCceeCch-HHhHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 7889999999999998888776652100 000111 222 2688899999999999999999988854
No 60
>KOG2431 consensus 1, 2-alpha-mannosidase [Carbohydrate transport and metabolism]
Probab=66.67 E-value=8.3 Score=44.28 Aligned_cols=80 Identities=24% Similarity=0.262 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHhhh--hhhccch---------hhhcc--cccccccchHHHHHHHHHhc
Q 043003 237 KIMAGLLDQYTLANNGQALNITIWMADYFNTRVQN--LIARSSL---------ERHYQ--TLNDESGGMNDVLYKLYGIT 303 (855)
Q Consensus 237 kI~aGLld~Y~~TG~~kaL~ia~r~AD~~~~r~~~--~~~~~~~---------~~~~~--~l~~E~GGmneaL~~LY~~T 303 (855)
-++-||+.+|-++|++-.|+.|+.++|-+...|+. .++ +++ ..+|. ....|.-.+.+-+-.|-++|
T Consensus 179 RvLGGLLSayHLsg~~~~L~kA~dlgdrLl~AF~sps~IP-ysdVnL~~~~A~~p~~~~~SStaEvttiQlEfr~Ls~lt 257 (546)
T KOG2431|consen 179 RVLGGLLSAYHLSGDEMFLNKAEDLGDRLLPAFSSPSPIP-YSDVNLGTGTAHPPRWTGDSSTAEVTTIQLEFRYLSRLT 257 (546)
T ss_pred HHHhhhhhhhccccchhHHHHHHHHHHHHHHhhcCCCCCC-cceeecCCCcccCCCCCCccchhhheeeeeeHHHHHhhc
Confidence 36789999999999999999999999999888742 111 111 01221 11123333445567789999
Q ss_pred CCHHHHHHHHhccc
Q 043003 304 KDPKHLKLAELFDK 317 (855)
Q Consensus 304 Gd~ryL~LA~~F~~ 317 (855)
||++|-++|.+..+
T Consensus 258 gd~kY~~~a~kv~e 271 (546)
T KOG2431|consen 258 GDPKYEELAEKVTE 271 (546)
T ss_pred CCchHHHHHHHHHH
Confidence 99999999988653
No 61
>PF05592 Bac_rhamnosid: Bacterial alpha-L-rhamnosidase; InterPro: IPR008902 This entry consists of bacterial rhamnosidase A and B enzymes. L-Rhamnose is abundant in biomass as a common constituent of glycolipids and glycosides, such as plant pigments, pectic polysaccharides, gums or biosurfactants. Some rhamnosides are important bioactive compounds. For example, terpenyl glycosides, the glycosidic precursor of aromatic terpenoids, act as important flavouring substances in grapes. Other rhamnosides act as cytotoxic rhamnosylated terpenoids, as signal substances in plants or play a role in the antigenicity of pathogenic bacteria [].; PDB: 2OKX_B 3CIH_A.
Probab=66.42 E-value=55 Score=38.74 Aligned_cols=137 Identities=16% Similarity=0.117 Sum_probs=73.5
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhCCCcccccC-CchhhhhhhccccccccchhhHHHHHHHHHHHHHhCC
Q 043003 173 LSATAMAWASTRNETVKQKMDAVMSVLSECQKKIGTGYLSAF-PSEFFDRLENLVYVWAPYYTIHKIMAGLLDQYTLANN 251 (855)
Q Consensus 173 LsA~A~~~a~t~D~~L~~k~d~~Vd~L~~~Q~~~~DGYL~a~-~~~~~~r~~~l~~~w~pyy~~HkI~aGLld~Y~~TG~ 251 (855)
+++.+.+ ...+|.+| ++..|+.+...|. ++|.+... |... ....-.|-|..+.|.. +-++|+++||
T Consensus 156 ~~~~~~~-~~~~~~~l---~~~~l~~~~~~q~--~~G~~p~~~P~~~------~~~~~~~~w~l~~i~~-~~~~y~~tGD 222 (509)
T PF05592_consen 156 VSALTAY-YSFGDAAL---YRKWLRDFADSQR--PDGLLPSVAPSYG------GGGFGIPDWSLAWIII-PWDYYLYTGD 222 (509)
T ss_dssp HHHHHHH-CCT--HHH---HHHHHHHHHGGTT--TSTT-SSBSS---------SSGGGBHHHHHHHHHH-HHHHHHHHT-
T ss_pred HHHHHHH-HhCCcHHH---HHHHHHHHHHhhc--ccCCceEEecccC------CCCCCCccHHHHHHHH-HHHHHHHhCC
Confidence 3444433 34456544 6678888899999 89988753 3211 0111224455566655 6799999999
Q ss_pred hhHH----HHHHHHHHHHHHHhhh-h--hhccchhhhcc----ccccccc----------chHHHHHHHHHhcCCH----
Q 043003 252 GQAL----NITIWMADYFNTRVQN-L--IARSSLERHYQ----TLNDESG----------GMNDVLYKLYGITKDP---- 306 (855)
Q Consensus 252 ~kaL----~ia~r~AD~~~~r~~~-~--~~~~~~~~~~~----~l~~E~G----------GmneaL~~LY~~TGd~---- 306 (855)
.+++ +.++++.||+.....+ + +..... .-|. ......+ .....+++|.++.|++
T Consensus 223 ~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~DW~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~lA~~lg~~~~a~ 301 (509)
T PF05592_consen 223 REFLEEYYPAMKRYLDYLERRVDDGLDGLPGWGF-GDWLAPGNDGDGPTPGATITNALYYYALRAAAELAEALGKDEDAA 301 (509)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTB-TSSB-CCSB---S-SS----TT---SCCEEHHHHHHHHHHHHHHHHHHHCT-HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCccccCCCCCce-eecCCccCcccccchHHHHHHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 8655 5677888888776554 0 111100 0121 0111111 1235678899999985
Q ss_pred HHHHHHHhccc---cccccc
Q 043003 307 KHLKLAELFDK---PCFLGL 323 (855)
Q Consensus 307 ryL~LA~~F~~---~~~~~~ 323 (855)
+|.++|+.+.. ..|+++
T Consensus 302 ~y~~~a~~lk~a~~~~~~d~ 321 (509)
T PF05592_consen 302 EYRARAERLKAAINRHFWDP 321 (509)
T ss_dssp HHHHHHHHHHHHHHHHCEET
T ss_pred HHHHHHHHHHHHHHHhccCc
Confidence 78888887643 445544
No 62
>PLN03009 cellulase
Probab=66.09 E-value=35 Score=40.78 Aligned_cols=125 Identities=12% Similarity=-0.034 Sum_probs=67.1
Q ss_pred CChHHHHHHHHHHHHHHHHHhhCCCcccccC-Cchhh--hhhh------ccccccc-----cch-hhHHHHHHHHHHHHH
Q 043003 184 RNETVKQKMDAVMSVLSECQKKIGTGYLSAF-PSEFF--DRLE------NLVYVWA-----PYY-TIHKIMAGLLDQYTL 248 (855)
Q Consensus 184 ~D~~L~~k~d~~Vd~L~~~Q~~~~DGYL~a~-~~~~~--~r~~------~l~~~w~-----pyy-~~HkI~aGLld~Y~~ 248 (855)
+-+.+++.++.-+|.|.+||. .+|-+-.- -...+ ..|. ..|.+.. |=- ..-.+-|+|..+++.
T Consensus 111 ~~~diLdeikw~~D~llkm~~--~~~~~y~qVg~~~~Dh~~W~~Pe~~~~~R~~~~is~~~p~sd~a~~~AAalA~as~v 188 (495)
T PLN03009 111 ELRNSLVAIRWATDYLLKTVS--QPNRIFVQVGDPIADHNCWERPEDMDTPRTVYAVNAPNPASDVAGETAAALAASSMA 188 (495)
T ss_pred ccHHHHHHHHHHHHHHHHccc--CcCeEEEEeCCCCCCcccCcChhhcCCCCeEEEecCCCCccHHHHHHHHHHHHHHHh
Confidence 346788888889999999987 44432210 00000 0111 1111110 000 023445666667776
Q ss_pred hCC------hhHHHHHHHHHHHHHHHhhhhhhccch-hhhccc-------ccccccchHHHHHHHHHhcCCHHHHHHHHh
Q 043003 249 ANN------GQALNITIWMADYFNTRVQNLIARSSL-ERHYQT-------LNDESGGMNDVLYKLYGITKDPKHLKLAEL 314 (855)
Q Consensus 249 TG~------~kaL~ia~r~AD~~~~r~~~~~~~~~~-~~~~~~-------l~~E~GGmneaL~~LY~~TGd~ryL~LA~~ 314 (855)
-.+ ++.|+.|+++-+|..+.-+.. ..-.. ...... ...| +.-+-+|||+.|||++||+-++.
T Consensus 189 fk~~D~~YA~~ll~~Ak~ly~~a~~~~g~y-~~~~~~~~g~~~~Y~~~s~~~DE---~~WAAawLy~aTgd~~Yl~~~~~ 264 (495)
T PLN03009 189 FRSSDPGYSETLLRNAIKTFQFADMYRGAY-SDNDDIKDGVCPFYCDFDGYQDE---LLWGAAWLRRASGDDSYLNYIEN 264 (495)
T ss_pred ccccCHHHHHHHHHHHHHHHHHHHHcCCCc-cCCccccCccccCcCCcccccHH---HHHHHHHHHHHhCCHHHHHHHHH
Confidence 654 368899999989887642211 00000 000000 1122 44577899999999999998764
No 63
>KOG2204 consensus Mannosyl-oligosaccharide alpha-1,2-mannosidase and related glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=64.61 E-value=32 Score=41.12 Aligned_cols=182 Identities=21% Similarity=0.220 Sum_probs=92.5
Q ss_pred HhCCChHHHHHHHHHHHHHHHHHhhCCCcccccC--Cchhhhhhhc-------cccccccchhhHHHHHHHHHHHHHhCC
Q 043003 181 ASTRNETVKQKMDAVMSVLSECQKKIGTGYLSAF--PSEFFDRLEN-------LVYVWAPYYTIHKIMAGLLDQYTLANN 251 (855)
Q Consensus 181 a~t~D~~L~~k~d~~Vd~L~~~Q~~~~DGYL~a~--~~~~~~r~~~-------l~~~w~pyy~~HkI~aGLld~Y~~TG~ 251 (855)
..|+|+.+.+|+..|.+.|.+.-. ++|-...| |... +|.. +-+.|=+| |+.++..+|+
T Consensus 344 ~ltg~P~~~ekv~~IRk~l~k~ek--P~GLypnYinP~sg--~wgq~~tslg~lgDSfyey---------llK~wl~s~k 410 (625)
T KOG2204|consen 344 KLTGNPTFAEKVVKIRKVLNKSEK--PHGLYPNYINPSSG--EWGQHHTSLGALGDSFYEY---------LLKAWLQSDK 410 (625)
T ss_pred hccCCchHHHHHHHHHHHHHhhcC--CCCCCcccccCCCC--chhhHHhHHhhhhhhHHHH---------HHHHHhhcCC
Confidence 468999999999999999999888 77744333 1111 2322 22332222 5567777777
Q ss_pred hhHHHHHHHHHHHHHHHhhh-hhh-----------ccchhhh-ccc--ccccccchHHHHHHHHHhcCC-----HHHHHH
Q 043003 252 GQALNITIWMADYFNTRVQN-LIA-----------RSSLERH-YQT--LNDESGGMNDVLYKLYGITKD-----PKHLKL 311 (855)
Q Consensus 252 ~kaL~ia~r~AD~~~~r~~~-~~~-----------~~~~~~~-~~~--l~~E~GGmneaL~~LY~~TGd-----~ryL~L 311 (855)
.. .-+.+|.+=...-+.. ++. .+...+. ..+ +.|--||| ..|-.++++ ++|++|
T Consensus 411 Td--~eak~my~~am~Ai~~~li~~S~~s~ltyi~e~~~g~lehKm~hlacf~gGm----~algA~~~~~~~~~~~y~el 484 (625)
T KOG2204|consen 411 TD--CEAKGMYEDAMIAIEKYLIFKSDGSGLTYISEWNGGGLEHKMGHLACFAGGM----FALGAIKGDTVGSSKHYLEL 484 (625)
T ss_pred cc--hHHHHhHHHHHHHHHhhheeccCCCCeEEEEecCCCchhhhhchhhcccccc----eeeccccCCCcchhHHHHHH
Confidence 65 3333333222211111 111 0111011 011 22333444 334455544 589999
Q ss_pred HHhccccc---c------ccccccc----cCCCCCCcc---cCcch-HhHHHHHHHHHhCChHHHHHHHHHHHHhcccCe
Q 043003 312 AELFDKPC---F------LGLLAVK----ADNIAGLHA---NTHIP-LVCGVQNRYELTGDEQSMAMGTFFMDIINSSHS 374 (855)
Q Consensus 312 A~~F~~~~---~------~~~la~~----~d~l~g~Ha---nthiP-~~~G~a~~Y~~TGD~~y~~aa~~fwd~V~~~~~ 374 (855)
+.-..++| | ++|.+.. ++...-.+. +=--| ++.+.--+|++|||++|++..-.-.+.+. ++.
T Consensus 485 ~~eia~TchesY~rt~T~lgpesf~fn~~~ea~~~r~~EsyyILrpEviEs~fYlwRlT~d~kyR~wgweavqale-k~c 563 (625)
T KOG2204|consen 485 GGEIATTCHESYTRTTTKLGPESFWFNHGVEAFAVRKVESYYILRPEVIESYFYLWRLTGDQKYRSWGWEAVQALE-KYC 563 (625)
T ss_pred hHHHHHHHHHHHhccccccChhhhcccCccchhhhhcccceeecCHHHHHHHHHHhhhcCChhHHHHHHHHHHHHH-Hhc
Confidence 98765422 1 1111100 000000000 00112 24677888999999999998766666665 455
Q ss_pred EeecCCCC
Q 043003 375 YATGGTSH 382 (855)
Q Consensus 375 Y~TGG~g~ 382 (855)
-+.+|.+.
T Consensus 564 r~~~G~~g 571 (625)
T KOG2204|consen 564 RVAKGYSG 571 (625)
T ss_pred ccccchhh
Confidence 56666653
No 64
>PLN02308 endoglucanase
Probab=61.79 E-value=57 Score=38.94 Aligned_cols=125 Identities=10% Similarity=-0.011 Sum_probs=66.9
Q ss_pred hHHHHHHHHHHHHHHHHHhhCCCcccccCC-ch--hhhhhh---c---cccccc-----cc-hhhHHHHHHHHHHHHHhC
Q 043003 186 ETVKQKMDAVMSVLSECQKKIGTGYLSAFP-SE--FFDRLE---N---LVYVWA-----PY-YTIHKIMAGLLDQYTLAN 250 (855)
Q Consensus 186 ~~L~~k~d~~Vd~L~~~Q~~~~DGYL~a~~-~~--~~~r~~---~---l~~~w~-----py-y~~HkI~aGLld~Y~~TG 250 (855)
+.+++.++.-.|.|.+||. +||.+-.-- .. ....|. . .|.+.. |= -..-.+-|+|..++++-.
T Consensus 112 ~~~ldeikw~~D~llkm~~--~~~~vy~qVg~~~~dh~~W~~Pe~~~~~R~~y~~~~~~pgSd~a~~~AAAlA~as~vf~ 189 (492)
T PLN02308 112 ENAVKAVKWATDYLMKATA--IPNVVYVQVGDAYSDHNCWERPEDMDTLRTVYKIDPSHPGSDVAGETAAALAAASIVFR 189 (492)
T ss_pred HHHHHHHHHHHHHHHHhcC--CCCeEEEEecCCCCCccCCCChhHcCCcceEEecCCCCCcchHHHHHHHHHHHHHHhcc
Confidence 4567778888999999998 665542110 00 001111 1 111110 10 012234466666777765
Q ss_pred C------hhHHHHHHHHHHHHHHHhhhhhhccchh--hhc---ccccccccchHHHHHHHHHhcCCHHHHHHHHhc
Q 043003 251 N------GQALNITIWMADYFNTRVQNLIARSSLE--RHY---QTLNDESGGMNDVLYKLYGITKDPKHLKLAELF 315 (855)
Q Consensus 251 ~------~kaL~ia~r~AD~~~~r~~~~~~~~~~~--~~~---~~l~~E~GGmneaL~~LY~~TGd~ryL~LA~~F 315 (855)
+ ++.|+.|+++-+|..+.-+......... ... .....| +.-+-+|||+.|||++||+.++..
T Consensus 190 ~~D~~YA~~lL~~Ak~ly~fa~~~~g~y~~~~~~~~~~~Y~~~s~~~DE---l~WAAawLy~ATgd~~Yl~~~~~~ 262 (492)
T PLN02308 190 KRDPAYSRLLLDRAVRVFAFADKYRGAYSSSLHAAVCPFYCDFNGYQDE---LLWGAAWLHKASRRREYREYIVKN 262 (492)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHcCCcccCCCCcccCCCcCCCCcccHH---HHHHHHHHHHHhCCHHHHHHHHHH
Confidence 3 4689999999998887432110000000 000 001122 345778999999999999977653
No 65
>PF06917 Pectate_lyase_2: Periplasmic pectate lyase; InterPro: IPR010702 This family consists of several Enterobacterial periplasmic pectate lyase proteins. A major virulence determinant of the plant-pathogenic enterobacterium Erwinia chrysanthemi is the production of pectate lyase enzymes that degrade plant cell walls [].; GO: 0016837 carbon-oxygen lyase activity, acting on polysaccharides, 0045490 pectin catabolic process, 0005737 cytoplasm; PDB: 2V8J_A 2V8K_A 2V8I_A.
Probab=59.91 E-value=33 Score=40.54 Aligned_cols=87 Identities=15% Similarity=0.217 Sum_probs=52.8
Q ss_pred hhHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhCCCcccccCCchhhhhhhccccccccchhhHHHHHHHHHHHHH
Q 043003 169 LGHYLSATAMAWASTRNETVKQKMDAVMSVLSECQKKIGTGYLSAFPSEFFDRLENLVYVWAPYYTIHKIMAGLLDQYTL 248 (855)
Q Consensus 169 ~Gh~LsA~A~~~a~t~D~~L~~k~d~~Vd~L~~~Q~~~~DGYL~a~~~~~~~r~~~l~~~w~pyy~~HkI~aGLld~Y~~ 248 (855)
-++||=+++.+|..++|++|.+.+..|...+ +=|=|+...... .+.+.-...-.|| +++ ++++.|++
T Consensus 386 ~~~yll~~vra~~~s~D~~Lw~~~~~m~~~~-------gLGdig~~~~~~-~~~~~~~~~~sp~----~L~-allEL~~a 452 (557)
T PF06917_consen 386 DPDYLLPYVRAYRLSRDPELWDLARTMAHHF-------GLGDIGNAAGKE-PRVNMQTDNASPY----LLF-ALLELYQA 452 (557)
T ss_dssp -HHHHHHHHHHHHHS--HHHHHHHHHHHHHT-------T-EE-TTBTTBS--EE-TT-----HH----HHH-HHHHHHHH
T ss_pred chhHhHHHHHHHHcCCCHHHHHHHHHHHhhc-------CcccccCccccc-cccccCCCCCCHH----HHH-HHHHHHHH
Confidence 4799999999999999999988777666532 345555433210 0111112333454 234 57799999
Q ss_pred hCChhHHHHHHHHHHHHHHH
Q 043003 249 ANNGQALNITIWMADYFNTR 268 (855)
Q Consensus 249 TG~~kaL~ia~r~AD~~~~r 268 (855)
|++++.|+.|.++++-+.++
T Consensus 453 tq~~~~l~lA~~~g~~l~~~ 472 (557)
T PF06917_consen 453 TQDARYLELADQVGENLFEQ 472 (557)
T ss_dssp H--HHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999988765
No 66
>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family. Members of this family are isozymes of pectate lyase (EC 4.2.2.2), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.
Probab=58.76 E-value=69 Score=35.67 Aligned_cols=126 Identities=12% Similarity=0.068 Sum_probs=66.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHhccc-------cccccccccccCCCCCCcccCcchH--------hHHHHHHHHHhC----
Q 043003 294 DVLYKLYGITKDPKHLKLAELFDK-------PCFLGLLAVKADNIAGLHANTHIPL--------VCGVQNRYELTG---- 354 (855)
Q Consensus 294 eaL~~LY~~TGd~ryL~LA~~F~~-------~~~~~~la~~~d~l~g~HanthiP~--------~~G~a~~Y~~TG---- 354 (855)
.-|+++|+.|+|++|.+.+.+=.+ +. +-.. +.+++.+ +...||+. +.-+..+++..+
T Consensus 51 ~fLa~~y~~t~d~~y~~A~~rgld~LL~aQypn--GGWP-Qf~p~~~-~Y~~~ITfND~am~~vl~lL~~i~~~~~~~~~ 126 (290)
T TIGR02474 51 RYLAQVYQQEKNAKYRDAARKGIEYLLKAQYPN--GGWP-QFYPLKG-GYSDAITYNDNAMVNVLTLLDDIANGKDPFDV 126 (290)
T ss_pred HHHHHHHHhcCchhHHHHHHHHHHHHHhhhCCC--CCcC-cccCCcC-CcccccccCcHHHHHHHHHHHHHHhccCCccc
Confidence 478999999999999999876322 10 0000 0111111 22344443 122223343222
Q ss_pred -----ChHHHHHHHHHHHHhcccCeEeecCC-CCC-----C-CC----CCCccccccCCcCccccchhhHHHHHHHHHHc
Q 043003 355 -----DEQSMAMGTFFMDIINSSHSYATGGT-SHQ-----E-FW----TDPKRIATALSAETEESCTTYNMLKVSRYLFK 418 (855)
Q Consensus 355 -----D~~y~~aa~~fwd~V~~~~~Y~TGG~-g~~-----E-~f----~~~~~l~~~l~~~~~ETCat~nmlkl~~~Lf~ 418 (855)
.++.+.+.++..+.+.+.+.- .||. +.+ | -+ .-.++++. -.+.||+..+ +.|..
T Consensus 127 ~~~~~~~r~~~Ai~Rgid~ILktQ~~-~gg~~t~Wg~Qyd~~tl~Pa~AR~yE~pS---ls~~ES~~iv------~~LM~ 196 (290)
T TIGR02474 127 FPDSTRTRAKTAVTKGIECILKTQVV-QNGKLTVWCQQHDALTLQPKKARAYELPS---LSSSESVGIL------LFLMT 196 (290)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhhcc-cCCcCCchhhccCccccccccccccCCcc---cccccHHHHH------HHHhc
Confidence 257788999999999865543 3433 221 1 11 11222222 3455665543 44444
Q ss_pred cC-CcchHHHHHHHHH
Q 043003 419 WT-KQVTYADYYERAL 433 (855)
Q Consensus 419 ~t-gd~~YaD~~ERaL 433 (855)
+. +++++.+-+|-++
T Consensus 197 ~~~ps~~i~~ai~~A~ 212 (290)
T TIGR02474 197 QPNPSAEIKEAIRAGV 212 (290)
T ss_pred CCCCCHHHHHHHHHHH
Confidence 44 7888888887665
No 67
>TIGR03463 osq_cycl 2,3-oxidosqualene cyclase. This model identifies 2,3-oxidosqualene cyclases from Stigmatella aurantiaca which produces cycloartenol, and Gemmata obscuriglobus and Methylococcus capsulatus which each produce the closely related sterol, lanosterol.
Probab=57.44 E-value=94 Score=38.35 Aligned_cols=109 Identities=15% Similarity=0.141 Sum_probs=65.1
Q ss_pred CCCCcccCC-------cccccchhhHHHHHHHHHHHhCC---ChHHHHHHHHHHHHHHHHHhhCCCcccccCCchhhhhh
Q 043003 153 PYGGWEDQK-------MELRGHFLGHYLSATAMAWASTR---NETVKQKMDAVMSVLSECQKKIGTGYLSAFPSEFFDRL 222 (855)
Q Consensus 153 ~~gGWe~~d-------sdlrGH~~Gh~LsA~A~~~a~t~---D~~L~~k~d~~Vd~L~~~Q~~~~DGYL~a~~~~~~~r~ 222 (855)
..|||-|.+ +|- ++.-|+|+..+-.... +..-.+++...|+.|..+|. .||=.++|....-.+|
T Consensus 357 ~~GGW~f~~~~~~~pdsD~----Ta~~L~Al~~~~~~~~~~~~~~~~~~l~~av~~Ll~~Qn--~dGGw~~y~~~~~~~~ 430 (634)
T TIGR03463 357 AKGGWCFSDGDHGWPVSDC----TAEALSASLVLEPLGLNPEERVPQARLQDAVEFILSRQN--EDGGFGTYERQRGPRV 430 (634)
T ss_pred CCCccccccCCCCCCcccc----HHHHHHHHHHHhhcCCcccccccHHHHHHHHHHHHHhcC--CCCCEeccCCCCcHHH
Confidence 348887763 443 5777888765532111 11345789999999999999 7887777753211122
Q ss_pred -hc----------cccccccchhhHHHHHHHHHHHHHh-C---ChhHHHHHHHHHHHHHHHh
Q 043003 223 -EN----------LVYVWAPYYTIHKIMAGLLDQYTLA-N---NGQALNITIWMADYFNTRV 269 (855)
Q Consensus 223 -~~----------l~~~w~pyy~~HkI~aGLld~Y~~T-G---~~kaL~ia~r~AD~~~~r~ 269 (855)
+. ..+.=-+.+|.|-|++ |. .+... . .++....+.|.++|+.+.-
T Consensus 431 l~~~~~~~~f~~~~~d~~~~d~Ta~~l~a-L~-~~~~~~~~~~~~~i~~ai~rav~~L~~~Q 490 (634)
T TIGR03463 431 LELLNPSEMFSTCMTDVSYVECTSSCLQA-LA-AWRKHHPHVPDGRITRAISRGVRFLRSRQ 490 (634)
T ss_pred HhcCChHHhhcccccCCCcCcHHHHHHHH-HH-HHhhcCcchhhhHHHHHHHHHHHHHHHhc
Confidence 10 1121136889988875 53 33322 2 2345566788889987653
No 68
>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family. Members of this family are isozymes of pectate lyase (EC 4.2.2.2), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.
Probab=56.36 E-value=73 Score=35.48 Aligned_cols=90 Identities=11% Similarity=0.007 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhCCCcccccCCchhhhhhhccccccccch---hhHHHHHHHHHHHH
Q 043003 171 HYLSATAMAWASTRNETVKQKMDAVMSVLSECQKKIGTGYLSAFPSEFFDRLENLVYVWAPYY---TIHKIMAGLLDQYT 247 (855)
Q Consensus 171 h~LsA~A~~~a~t~D~~L~~k~d~~Vd~L~~~Q~~~~DGYL~a~~~~~~~r~~~l~~~w~pyy---~~HkI~aGLld~Y~ 247 (855)
-=|.=++.+|..++|+..++.+.+-|+.|.++|- ++|=...|... ...-..+-+|+ +.|-|+. |.+.++
T Consensus 48 ~e~~fLa~~y~~t~d~~y~~A~~rgld~LL~aQy--pnGGWPQf~p~-----~~~Y~~~ITfND~am~~vl~l-L~~i~~ 119 (290)
T TIGR02474 48 TEIRYLAQVYQQEKNAKYRDAARKGIEYLLKAQY--PNGGWPQFYPL-----KGGYSDAITYNDNAMVNVLTL-LDDIAN 119 (290)
T ss_pred HHHHHHHHHHHhcCchhHHHHHHHHHHHHHhhhC--CCCCcCcccCC-----cCCcccccccCcHHHHHHHHH-HHHHHh
Confidence 3455578889999999999999999999999999 66533332211 00001111222 2344433 555555
Q ss_pred HhC---------ChhHHHHHHHHHHHHHHH
Q 043003 248 LAN---------NGQALNITIWMADYFNTR 268 (855)
Q Consensus 248 ~TG---------~~kaL~ia~r~AD~~~~r 268 (855)
.-+ .+++...+.|..|||.+.
T Consensus 120 ~~~~~~~~~~~~~~r~~~Ai~Rgid~ILkt 149 (290)
T TIGR02474 120 GKDPFDVFPDSTRTRAKTAVTKGIECILKT 149 (290)
T ss_pred ccCCcccccHHHHHHHHHHHHHHHHHHHHh
Confidence 333 268899999999998864
No 69
>cd02892 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. This group contains bacterial SQCY which catalyzes the convertion of squalene to hopene or diplopterol and eukaryotic OSQCY which transforms the 2,3-epoxide of squalene to compounds such as, lanosterol in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain.
Probab=53.50 E-value=87 Score=38.53 Aligned_cols=107 Identities=18% Similarity=0.120 Sum_probs=61.9
Q ss_pred CCCcccC-------CcccccchhhHHHHHHHHHHHhCC--ChHHHHHHHHHHHHHHHHHhhCCCcccccCCchhhhh-hh
Q 043003 154 YGGWEDQ-------KMELRGHFLGHYLSATAMAWASTR--NETVKQKMDAVMSVLSECQKKIGTGYLSAFPSEFFDR-LE 223 (855)
Q Consensus 154 ~gGWe~~-------dsdlrGH~~Gh~LsA~A~~~a~t~--D~~L~~k~d~~Vd~L~~~Q~~~~DGYL~a~~~~~~~r-~~ 223 (855)
.|||-|. |+|. ++.-|.|+..+....+ +..-.+.++..|+.|.++|. +||-+.+|....-.. ++
T Consensus 359 ~GGW~fs~~~~~~pd~d~----Ta~~l~AL~~~~~~~~~~~~~~~~~i~~Av~wLl~~Qn--~dGgf~~y~~~~~~~~~~ 432 (634)
T cd02892 359 KGGWAFSTANQGYPDSDD----TAEALKALLRLQELPPFGEKVSRERLYDAVDWLLGMQN--SNGGFAAFEPDNTYHWLE 432 (634)
T ss_pred CCCCCCCCCCCCCCCcCc----hHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHhccC--CCCCEeeecCCCchhhHh
Confidence 4888774 3443 5777777766554432 45677899999999999999 898887764211011 11
Q ss_pred ccc--ccc--------ccchhhHHHHHHHHHHHHHhCCh---hHHHHHHHHHHHHHHH
Q 043003 224 NLV--YVW--------APYYTIHKIMAGLLDQYTLANNG---QALNITIWMADYFNTR 268 (855)
Q Consensus 224 ~l~--~~w--------~pyy~~HkI~aGLld~Y~~TG~~---kaL~ia~r~AD~~~~r 268 (855)
++. ..+ -+-+|.+-+++ |. ......+. +..+.+.|..+|+.+.
T Consensus 433 ~~~p~e~~g~~~~d~~~~~~Ta~~l~a-L~-~~~~~~~~~r~~i~~~i~rAv~~L~~~ 488 (634)
T cd02892 433 NLNPFEDFGDIMIDPPYVECTGSVLEA-LG-LFGKLYPGHRREIDPAIRRAVKYLLRE 488 (634)
T ss_pred hcCchhhhcccccCCCCcchHHHHHHH-HH-HhcccCcchHHHHHHHHHHHHHHHHHc
Confidence 100 001 13456665543 42 22212221 3456788888888764
No 70
>PF00759 Glyco_hydro_9: Glycosyl hydrolase family 9; InterPro: IPR001701 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 9 GH9 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family E. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1RQ5_A 1CLC_A 3H7L_B 1K72_B 1G87_B 1GA2_A 1KFG_A 1UT9_A 2YIK_A 3RX5_A ....
Probab=49.84 E-value=88 Score=36.35 Aligned_cols=33 Identities=33% Similarity=0.488 Sum_probs=26.0
Q ss_pred HHHHHH---HhCChHHHHHHHHHHHHhcccC----eEeec
Q 043003 346 VQNRYE---LTGDEQSMAMGTFFMDIINSSH----SYATG 378 (855)
Q Consensus 346 ~a~~Y~---~TGD~~y~~aa~~fwd~V~~~~----~Y~TG 378 (855)
++..|+ .+++++|++.++.-.+.|.... +|+||
T Consensus 332 l~~~~~~~~~~~~~~y~~~a~~qldyiLG~Np~~~SyV~G 371 (444)
T PF00759_consen 332 LALAYAKYDLTGDQEYRDFAQSQLDYILGRNPFGQSYVTG 371 (444)
T ss_dssp HHHHHHHTCHCHHHHHHHHHHHHHHHHHTTSTT--BSBTT
T ss_pred HHHHHHhcccCChHHHHHHHHHHhhhhcCcCCCCceeeec
Confidence 455677 9999999999999999876543 66775
No 71
>cd02889 SQCY Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. Bacterial SQCY catalyzes the convertion of squalene to hopene or diplopterol. Eukaryotic OSQCY transforms the 2,3-epoxide of squalene to compounds such as, lanosterol (a metabolic precursor of cholesterol and steroid hormones) in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain. This group also contains SQCY-like archael sequences and some bacterial SQCY's which lack this minor domain.
Probab=48.64 E-value=1.3e+02 Score=33.35 Aligned_cols=143 Identities=13% Similarity=-0.010 Sum_probs=72.7
Q ss_pred HHHHHHHHhhhhccccchhhHhHHHhcCCCCCCCCCCCcccCCccc---ccchhhHHHHHHHHHHHhC--CChHHHHHHH
Q 043003 119 WRAQQTNLEYLVMLDVDRLVWSFRKTAGLPTPGAPYGGWEDQKMEL---RGHFLGHYLSATAMAWAST--RNETVKQKMD 193 (855)
Q Consensus 119 ~~~~~~~~~yll~ld~drLL~nFR~~AGl~~~g~~~gGWe~~dsdl---rGH~~Gh~LsA~A~~~a~t--~D~~L~~k~d 193 (855)
.+..+..++||+......+-..+ ++.- +..+-|||.+..... ..-.++.-+.+++.+.... ++....+.++
T Consensus 45 ~~~~~ka~~~l~~~q~~~~~~~~---~~~~-~~~~~Ggw~y~~~~~~~~~~~~Ta~~l~al~~~~~~~~~~~~~~~~~i~ 120 (348)
T cd02889 45 DPALKKALEWLLKSQIRDNPDDW---KVKY-RHLRKGGWAFSTANQGYPDSDDTAEALKALLRLQKKPPDGKKVSRERLY 120 (348)
T ss_pred CHHHHHHHHHHHhcCCCCCCCch---hhcC-CCCCCCcCcccCcCCCCCCCCChHHHHHHHHHhhccCcccchhhHHHHH
Confidence 45666777787764321100000 0000 112336776543110 0012456666666554444 2467788999
Q ss_pred HHHHHHHHHHhhCCCcccccCCchhhhhhhc-----cc----cccccchhhHHHHHHHHHHHHHhCC--hhHHHHHHHHH
Q 043003 194 AVMSVLSECQKKIGTGYLSAFPSEFFDRLEN-----LV----YVWAPYYTIHKIMAGLLDQYTLANN--GQALNITIWMA 262 (855)
Q Consensus 194 ~~Vd~L~~~Q~~~~DGYL~a~~~~~~~r~~~-----l~----~~w~pyy~~HkI~aGLld~Y~~TG~--~kaL~ia~r~A 262 (855)
..++.|.++|+ +||.+..+....-.+|.+ .. +.-.+.+|.|-+++ |...-....+ ++..+.+.+.+
T Consensus 121 ~a~~~L~~~Q~--~dG~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ta~~l~a-L~~~~~~~~~~~~~~~~~i~~a~ 197 (348)
T cd02889 121 DAVDWLLSMQN--SNGGFAAFEPDNTYKYLELIPEVDGDIMIDPPYVECTGSVLEA-LGLFGKLYPEHRREIDPAIRRAV 197 (348)
T ss_pred HHHHHHHHhcc--CCCCEeeecCCccHHHHhcCchhhcCCccCCCCcchHHHHHHH-HHHhhhcCCchHHHHHHHHHHHH
Confidence 99999999999 898877654321111200 00 11124667766543 5332222111 23456778888
Q ss_pred HHHHHH
Q 043003 263 DYFNTR 268 (855)
Q Consensus 263 D~~~~r 268 (855)
+|+.+.
T Consensus 198 ~~L~~~ 203 (348)
T cd02889 198 KYLERE 203 (348)
T ss_pred HHHHHh
Confidence 887654
No 72
>KOG2787 consensus Lanthionine synthetase C-like protein 1 [Defense mechanisms]
Probab=48.59 E-value=35 Score=38.31 Aligned_cols=109 Identities=22% Similarity=0.209 Sum_probs=67.3
Q ss_pred hhHHHHHHHHHHHHHHH-hh--hhhh--ccchhh--hcccccccccchHHHHHHHHHhcCCHHHHHHHHhc----ccccc
Q 043003 252 GQALNITIWMADYFNTR-VQ--NLIA--RSSLER--HYQTLNDESGGMNDVLYKLYGITKDPKHLKLAELF----DKPCF 320 (855)
Q Consensus 252 ~kaL~ia~r~AD~~~~r-~~--~~~~--~~~~~~--~~~~l~~E~GGmneaL~~LY~~TGd~ryL~LA~~F----~~~~~ 320 (855)
+..++.+++-.||+.+. |. +... +...++ ||. |... ||...|++.|++-++++||+.|..- +++.+
T Consensus 241 ~~~~~dVK~sldym~~~rfpsGNyP~s~~~~~drLVhWc--HGAp-Gv~~~L~kAy~VF~Eekyl~aa~ecadvVW~rGl 317 (403)
T KOG2787|consen 241 PALLKDVKGSLDYMIQNRFPSGNYPSSEGNKRDRLVHWC--HGAP-GVAYTLAKAYQVFKEEKYLEAAMECADVVWKRGL 317 (403)
T ss_pred hhHHHhhhhHHHHHHHccCCCCCCCcccCCCcceeeeec--cCCc-hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhh
Confidence 35688889999998864 32 1110 111111 342 2211 6899999999999999999887653 33333
Q ss_pred ccccccccCCCCCCcccCcchHhHHHHHHHHHhCChHHHHHHHHHHHHhcc
Q 043003 321 LGLLAVKADNIAGLHANTHIPLVCGVQNRYELTGDEQSMAMGTFFMDIINS 371 (855)
Q Consensus 321 ~~~la~~~d~l~g~HanthiP~~~G~a~~Y~~TGD~~y~~aa~~fwd~V~~ 371 (855)
+ .++...-.|.--| ..-+.-+|++|+|.+|+--|..|-..+.+
T Consensus 318 L---kkg~GichGvaGN-----aYvFLsLyRLT~d~kYlyRA~kFae~lld 360 (403)
T KOG2787|consen 318 L---KKGVGICHGVAGN-----AYVFLSLYRLTGDMKYLYRAKKFAEWLLD 360 (403)
T ss_pred h---hcCCcccccccCc-----hhhhHhHHHHcCcHHHHHHHHHHHHHHHh
Confidence 2 2222111111111 12356789999999999999999998875
No 73
>TIGR01787 squalene_cyclas squalene/oxidosqualene cyclases. This family of enzymes catalyzes the cyclization of the triterpenes squalene or 2-3-oxidosqualene to a variety of products including hopene, lanosterol, cycloartenol, amyrin, lupeol and isomultiflorenol.
Probab=45.82 E-value=73 Score=39.15 Aligned_cols=80 Identities=15% Similarity=0.160 Sum_probs=49.3
Q ss_pred CChHHHHHHHHHHHHHHHHHhhCCCcccccCCchhhhh-hhcc------ccc-cc---cchhhHHHHHHHHHHHHHhCCh
Q 043003 184 RNETVKQKMDAVMSVLSECQKKIGTGYLSAFPSEFFDR-LENL------VYV-WA---PYYTIHKIMAGLLDQYTLANNG 252 (855)
Q Consensus 184 ~D~~L~~k~d~~Vd~L~~~Q~~~~DGYL~a~~~~~~~r-~~~l------~~~-w~---pyy~~HkI~aGLld~Y~~TG~~ 252 (855)
+++...++++..|+.|.++|. +||-.++|....... ++.+ .+. .. +-+|+|-|++ |. .+.. ..+
T Consensus 382 ~~~~~~~~l~~a~~~Ll~~Qn--~dGGw~ay~~~~~~~~l~~l~p~e~f~d~~~d~~~~~~T~~~l~a-L~-~~~~-r~~ 456 (621)
T TIGR01787 382 DEHVKRDRLRDAVNWILGMQS--SNGGFAAYDPDNTGEWLELLNPSEVFGDIMIDPPYVDVTARVIQA-LG-AFGH-RAD 456 (621)
T ss_pred cccccHHHHHHHHHHHHHHcC--CCCCEeeeccccchHHHHHhcchhhhccccccCCCCchHHHHHHH-HH-HhcC-ccH
Confidence 456677889999999999999 899888875211100 1111 111 11 2378877765 53 2221 113
Q ss_pred hHHHHHHHHHHHHHHH
Q 043003 253 QALNITIWMADYFNTR 268 (855)
Q Consensus 253 kaL~ia~r~AD~~~~r 268 (855)
+..+.+.|..+|+.+.
T Consensus 457 ~~~~~i~rAl~~L~~~ 472 (621)
T TIGR01787 457 EIRNVLERALEYLRRE 472 (621)
T ss_pred hHHHHHHHHHHHHHHh
Confidence 4567888999998864
No 74
>KOG2430 consensus Glycosyl hydrolase, family 47 [Carbohydrate transport and metabolism]
Probab=45.49 E-value=2.4e+02 Score=31.98 Aligned_cols=183 Identities=15% Similarity=0.209 Sum_probs=99.9
Q ss_pred chhhHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHhhh---hhhccch---hhhccccccccc-ch---HHHHHHHHH
Q 043003 232 YYTIHKIMAGLLDQYTLANNGQALNITIWMADYFNTRVQN---LIARSSL---ERHYQTLNDESG-GM---NDVLYKLYG 301 (855)
Q Consensus 232 yy~~HkI~aGLld~Y~~TG~~kaL~ia~r~AD~~~~r~~~---~~~~~~~---~~~~~~l~~E~G-Gm---neaL~~LY~ 301 (855)
-|.+-+|+. ..+.-+.||.+-.-+.|.|..|++.+.-.+ +. +... ..-|..-..-.| || -|-+.+.|-
T Consensus 185 ac~gtlile-faals~~tg~~ifee~arkaldflwekr~rss~l~-g~~inihsgdw~rkdsgigagidsyyey~lkayi 262 (587)
T KOG2430|consen 185 ACAGTLILE-FAALSRFTGAPIFEEKARKALDFLWEKRHRSSDLM-GTTINIHSGDWTRKDSGIGAGIDSYYEYLLKAYI 262 (587)
T ss_pred hccchhhhh-HHHHhhccCChhhHHHHHHHHHHHHHHhccccccc-ceeEEeccCcceecccCcCcchHHHHHHHHHHhh
Confidence 466777763 334567899999999999999999864321 11 0011 011311111111 44 367788899
Q ss_pred hcCCHHHHHHHHhccc--cccccccccccCCCCCCcccCcchHh--HHHHHH--------HHHhCChHH-HHHHHHHHHH
Q 043003 302 ITKDPKHLKLAELFDK--PCFLGLLAVKADNIAGLHANTHIPLV--CGVQNR--------YELTGDEQS-MAMGTFFMDI 368 (855)
Q Consensus 302 ~TGd~ryL~LA~~F~~--~~~~~~la~~~d~l~g~HanthiP~~--~G~a~~--------Y~~TGD~~y-~~aa~~fwd~ 368 (855)
+-||+.||+--....+ .++.. ..++ -.-.+-|.|.+ -|..+. -.+.||-+- .+.-+-.++.
T Consensus 263 llgddsfldrfn~hydai~ryi~-----k~pi-~ldvhihkp~l~ar~~mdallaf~pglqvlkgdik~aie~heml~qv 336 (587)
T KOG2430|consen 263 LLGDDSFLDRFNKHYDAIKRYIN-----KGPI-FLDVHIHKPMLAARGFMDALLAFFPGLQVLKGDIKEAIEMHEMLFQV 336 (587)
T ss_pred eeccHHHHHHHHHHHHHHHHHhc-----CCCe-EEEEecccchhhHhhHHHHHHHhCcchhhhccccHHHHHHHHHHHHH
Confidence 9999999973322211 01100 0000 00113455654 232221 134566433 3445556666
Q ss_pred hcccCeEeecCCCCCCCCCCCccccccCCcCccccchhhHHHHHHHHHHccCCcchHHHHHHHHHhh
Q 043003 369 INSSHSYATGGTSHQEFWTDPKRIATALSAETEESCTTYNMLKVSRYLFKWTKQVTYADYYERALTN 435 (855)
Q Consensus 369 V~~~~~Y~TGG~g~~E~f~~~~~l~~~l~~~~~ETCat~nmlkl~~~Lf~~tgd~~YaD~~ERaLyN 435 (855)
+.+++. . -|.|..+.. ...+|.----+...++..|++.|||+.|..+.-..+=|
T Consensus 337 ikkh~f-l------peaft~df~------vhwaehpirpefaestyflykat~dp~yl~v~k~iidn 390 (587)
T KOG2430|consen 337 IKKHKF-L------PEAFTHDFQ------VHWAEHPIRPEFAESTYFLYKATGDPHYLEVAKQIIDN 390 (587)
T ss_pred HHHccc-C------hHhhcccce------eecccCCCChhhhhhheeeecccCCchHHHHHHHHHHH
Confidence 654433 2 255554432 23455555555666778899999999999988776654
No 75
>PF09492 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 Members of this family are isozymes of pectate lyase (4.2.2.2 from EC), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.; PDB: 1R76_A 1GXM_B 1GXN_A 1GXO_A.
Probab=45.21 E-value=87 Score=34.88 Aligned_cols=93 Identities=12% Similarity=0.028 Sum_probs=57.0
Q ss_pred hHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhCCCcccccCCchh-hhhhhccccccccchhhHHHHHHHHHHHHH
Q 043003 170 GHYLSATAMAWASTRNETVKQKMDAVMSVLSECQKKIGTGYLSAFPSEF-FDRLENLVYVWAPYYTIHKIMAGLLDQYTL 248 (855)
Q Consensus 170 Gh~LsA~A~~~a~t~D~~L~~k~d~~Vd~L~~~Q~~~~DGYL~a~~~~~-~~r~~~l~~~w~pyy~~HkI~aGLld~Y~~ 248 (855)
-.=|.=++.+|..|+|+++++-+.+-|+.|.++|-. ..||=.-||... ....--.+|. + +.+.|.. |.+.++.
T Consensus 42 ~~ei~fLa~~y~~t~d~~y~~A~~kgl~ylL~aQyp-nGGWPQ~yP~~~~Y~~~ITfNDd-a---m~~vl~l-L~~v~~~ 115 (289)
T PF09492_consen 42 TTEIRFLARVYQATKDPRYREAFLKGLDYLLKAQYP-NGGWPQFYPLRGGYHDHITFNDD-A---MVNVLEL-LRDVAEG 115 (289)
T ss_dssp HHHHHHHHHHHHHCG-HHHHHHHHHHHHHHHHHS-T-TS--BSECS--SGGGGSEE-GGG-H---HHHHHHH-HHHHHCT
T ss_pred HHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhhCC-CCCCCccCCCCCCCCCceEEccH-H---HHHHHHH-HHHHHhh
Confidence 445667899999999999999999999999999983 224444444210 0000001110 0 1222222 5677777
Q ss_pred hCCh---------hHHHHHHHHHHHHHHH
Q 043003 249 ANNG---------QALNITIWMADYFNTR 268 (855)
Q Consensus 249 TG~~---------kaL~ia~r~AD~~~~r 268 (855)
.++- ++.+.+.|-.|+|.+.
T Consensus 116 ~~~~~~v~~~~~~r~~~A~~kgi~ciL~t 144 (289)
T PF09492_consen 116 KGDFAFVDESLRARARAAVDKGIDCILKT 144 (289)
T ss_dssp -TTSTTS-HHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCccccCHHHHHHHHHHHHHHHHHHHHH
Confidence 7766 8999999999999875
No 76
>PF09492 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 Members of this family are isozymes of pectate lyase (4.2.2.2 from EC), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.; PDB: 1R76_A 1GXM_B 1GXN_A 1GXO_A.
Probab=43.42 E-value=49 Score=36.77 Aligned_cols=127 Identities=21% Similarity=0.220 Sum_probs=62.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHhccccccccccccccC--------CC-CCCc----ccCcchH-hHH-HHHHHHHhCCh--
Q 043003 294 DVLYKLYGITKDPKHLKLAELFDKPCFLGLLAVKAD--------NI-AGLH----ANTHIPL-VCG-VQNRYELTGDE-- 356 (855)
Q Consensus 294 eaL~~LY~~TGd~ryL~LA~~F~~~~~~~~la~~~d--------~l-~g~H----anthiP~-~~G-~a~~Y~~TGD~-- 356 (855)
.-|+++|..|+|++|++.+.+=.+ | .|..+.+ ++ .+.| .|+.+-+ ++- +...++-.++-
T Consensus 46 ~fLa~~y~~t~d~~y~~A~~kgl~--y--lL~aQypnGGWPQ~yP~~~~Y~~~ITfNDdam~~vl~lL~~v~~~~~~~~~ 121 (289)
T PF09492_consen 46 RFLARVYQATKDPRYREAFLKGLD--Y--LLKAQYPNGGWPQFYPLRGGYHDHITFNDDAMVNVLELLRDVAEGKGDFAF 121 (289)
T ss_dssp HHHHHHHHHCG-HHHHHHHHHHHH--H--HHHHS-TTS--BSECS--SGGGGSEE-GGGHHHHHHHHHHHHHCT-TTSTT
T ss_pred HHHHHHHHHhCChHHHHHHHHHHH--H--HHHhhCCCCCCCccCCCCCCCCCceEEccHHHHHHHHHHHHHHhhcCCccc
Confidence 478999999999999998875221 0 0001100 01 1122 2332221 111 22334445554
Q ss_pred -------HHHHHHHHHHHHhcccCeEeecCCCC-----CCC-----CCCCccccccCCcCccccchhhHHHHHHHHHHcc
Q 043003 357 -------QSMAMGTFFMDIINSSHSYATGGTSH-----QEF-----WTDPKRIATALSAETEESCTTYNMLKVSRYLFKW 419 (855)
Q Consensus 357 -------~y~~aa~~fwd~V~~~~~Y~TGG~g~-----~E~-----f~~~~~l~~~l~~~~~ETCat~nmlkl~~~Lf~~ 419 (855)
+++++..+..+.+.+.++-+-|=... +|. +.-.+++|. -.+.||+.. .+.|..+
T Consensus 122 v~~~~~~r~~~A~~kgi~ciL~tQi~~~g~~t~W~qQhD~~Tl~Pa~AR~yE~pS---ls~~ES~~i------v~~LM~~ 192 (289)
T PF09492_consen 122 VDESLRARARAAVDKGIDCILKTQIRQNGKLTAWCQQHDEVTLQPAWARAYEPPS---LSGSESVGI------VRFLMSL 192 (289)
T ss_dssp S-HHHHHHHHHHHHHHHHHHHHHS-EETTEE----SEE-TTT-SB---STT--SS---EECCCHHHH------HHHHCTS
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHcccCCCCCchhhccCcccccccccccCCCcc---cccccHHHH------HHHHhcC
Confidence 77899999999999888766443332 121 122233332 345555544 3444455
Q ss_pred C-CcchHHHHHHHHH
Q 043003 420 T-KQVTYADYYERAL 433 (855)
Q Consensus 420 t-gd~~YaD~~ERaL 433 (855)
. +.+++.+-+|.++
T Consensus 193 ~~ps~~v~~aI~~Av 207 (289)
T PF09492_consen 193 PNPSPEVLAAIEAAV 207 (289)
T ss_dssp SS--HHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
Confidence 4 5677777777664
No 77
>PF13249 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 1O6Q_B 1H35_C 1H3A_C 1SQC_A 1UMP_A 1O6H_C 1O79_B 1GSZ_C 1H37_C ....
Probab=42.49 E-value=75 Score=28.93 Aligned_cols=61 Identities=16% Similarity=0.047 Sum_probs=36.6
Q ss_pred HHHH--HHHHHHHHhhCCCcccccCCchhhhhhhccccccccchhhHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHH
Q 043003 192 MDAV--MSVLSECQKKIGTGYLSAFPSEFFDRLENLVYVWAPYYTIHKIMAGLLDQYTLANNGQALNITIWMADYFNTR 268 (855)
Q Consensus 192 ~d~~--Vd~L~~~Q~~~~DGYL~a~~~~~~~r~~~l~~~w~pyy~~HkI~aGLld~Y~~TG~~kaL~ia~r~AD~~~~r 268 (855)
.+++ ++.|.++|. +||-++..+.... .+ .+++ ..+| .+....|.++..+.+.+.++|+.+.
T Consensus 42 ~~~~~~~~~L~~~q~--~dGg~~~~~~~~~------~~---~~~t----~~~l-~~l~~~~~~~~~~~~~~a~~~l~~~ 104 (113)
T PF13249_consen 42 RDRAAAVEWLLSQQN--PDGGWGSNPDGGP------PD---VYTT----YVAL-AALELLGRPDDEEAVRKAVDWLLSC 104 (113)
T ss_dssp HHHHHHHHHHHHHB---TTSGBBSSTTTT-------BS---HHHH----HHHH-HHHHHHT-GGCHTTHCCHHHHHHHT
T ss_pred HHHHHHHHHHHHhCC--CCCCccCCCCCCC------cc---HHHH----HHHH-HHHHHcCCCcccHHHHHHHHHHHHh
Confidence 5555 999999999 8988877653110 01 1222 2233 3445566666577888888998763
No 78
>COG1339 Transcriptional regulator of a riboflavin/FAD biosynthetic operon [Transcription / Coenzyme metabolism]
Probab=36.25 E-value=37 Score=35.62 Aligned_cols=47 Identities=21% Similarity=0.345 Sum_probs=35.6
Q ss_pred EEeecCCcCCC-------CceEEECCccccCCCCCCeEEE-EeecCCCCEEEEEecceeEEE
Q 043003 556 NLRIPFWANPN-------GGKATLNKDNLQIPSPGNFLSV-TRAWSPDEKLFIQLPINLRTE 609 (855)
Q Consensus 556 ~LRIP~Wa~~~-------~~~i~VNG~~~~~~~~ggY~~I-~R~Wk~GD~V~L~LPm~lr~~ 609 (855)
-+|||+|-.++ -+.++|||. .|.+++ +|+-.+.|+|++-=|+.+|-+
T Consensus 145 gi~Iegf~~~~RtfG~v~~yp~~Ingi-------~gaiV~P~rT~h~~dviEIIapv~LR~~ 199 (214)
T COG1339 145 GIRIEGFKTEDRTFGGVKAYPCKINGI-------EGAIVIPERTHHPTDVIEIIAPVKLRDE 199 (214)
T ss_pred CEeeCCCCCCCceeccEEEEEEEEcCc-------ceEEEeeccccCCcceEEEEccHhHHHH
Confidence 47899997531 267889983 235555 788888999999999999865
No 79
>cd00100 IL1 Interleukin-1 homologes; Cytokines with various biological functions. Interleukin 1 alpha and beta are also known as hematopoietin and catabolin. This family also contains interleukin-1 receptor antagonists (inhibitors).
Probab=35.73 E-value=2.2e+02 Score=28.48 Aligned_cols=30 Identities=13% Similarity=0.136 Sum_probs=21.7
Q ss_pred CeEEEeecCCCCeEEEeccccCCCceEEEeec
Q 043003 768 DTVSLESVSRKGCFVFSDVNLKAGTALKLNCQ 799 (855)
Q Consensus 768 ~~vsles~~~pg~~~~~~~~~~~g~~~~~~~~ 799 (855)
.+.+|||+.+||+|+... ......|.+...
T Consensus 103 ~~~~FeSaa~PgWfIsTs--~~~~~PV~l~~~ 132 (144)
T cd00100 103 NKNYFESAAFPNWFIATK--QEEDKPVFLANG 132 (144)
T ss_pred CceEEEEccCCCcEEEec--ccCCeEEEeecC
Confidence 499999999999999742 223456776543
No 80
>TIGR03463 osq_cycl 2,3-oxidosqualene cyclase. This model identifies 2,3-oxidosqualene cyclases from Stigmatella aurantiaca which produces cycloartenol, and Gemmata obscuriglobus and Methylococcus capsulatus which each produce the closely related sterol, lanosterol.
Probab=33.43 E-value=2.8e+02 Score=34.35 Aligned_cols=82 Identities=18% Similarity=0.162 Sum_probs=51.9
Q ss_pred hhHHHHHHHHHHHhCC---ChHHHHHHHHHHHHHHHHHhhCCCcccccCCchhhhhhhccccccccchhhHHHHHHHHHH
Q 043003 169 LGHYLSATAMAWASTR---NETVKQKMDAVMSVLSECQKKIGTGYLSAFPSEFFDRLENLVYVWAPYYTIHKIMAGLLDQ 245 (855)
Q Consensus 169 ~Gh~LsA~A~~~a~t~---D~~L~~k~d~~Vd~L~~~Q~~~~DGYL~a~~~~~~~r~~~l~~~w~pyy~~HkI~aGLld~ 245 (855)
+++-|+|++....... .+++.+.+++.|+.|.+.|. +||-.... |. ....|-|.+-++ ||.
T Consensus 453 Ta~~l~aL~~~~~~~~~~~~~~i~~ai~rav~~L~~~Q~--~dGsW~g~-------Wg----~~~~Y~T~~al~-aL~-- 516 (634)
T TIGR03463 453 TSSCLQALAAWRKHHPHVPDGRITRAISRGVRFLRSRQR--EDGSFPGS-------WG----VCFTYGTFHGVM-GLR-- 516 (634)
T ss_pred HHHHHHHHHHHhhcCcchhhhHHHHHHHHHHHHHHHhcC--CCCCcccc-------CC----CCCcHHHHHHHH-HHH--
Confidence 5788888887654333 25677889999999999999 77644221 21 112444554433 342
Q ss_pred HHHhCChhHHHHHHHHHHHHHHH
Q 043003 246 YTLANNGQALNITIWMADYFNTR 268 (855)
Q Consensus 246 Y~~TG~~kaL~ia~r~AD~~~~r 268 (855)
..|.+.--+.+.|.++|+.+.
T Consensus 517 --~~G~~~~~~~i~rA~~~Ll~~ 537 (634)
T TIGR03463 517 --AAGASPDDMALQRAAAWLRSY 537 (634)
T ss_pred --HcCCCcCcHHHHHHHHHHHHc
Confidence 345544447788889998864
No 81
>TIGR01507 hopene_cyclase squalene-hopene cyclase. SHC is an essential prokaryotic gene in hopanoid (triterpenoid) biosynthesis. Squalene hopene cyclase, an integral membrane protein, directly cyclizes squalene into hopanoid products.
Probab=33.21 E-value=1.7e+02 Score=36.13 Aligned_cols=103 Identities=16% Similarity=0.114 Sum_probs=61.2
Q ss_pred CCCcccCC-------cccccchhhHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhCCCcccccCCchh-hhhhhcc
Q 043003 154 YGGWEDQK-------MELRGHFLGHYLSATAMAWASTRNETVKQKMDAVMSVLSECQKKIGTGYLSAFPSEF-FDRLENL 225 (855)
Q Consensus 154 ~gGWe~~d-------sdlrGH~~Gh~LsA~A~~~a~t~D~~L~~k~d~~Vd~L~~~Q~~~~DGYL~a~~~~~-~~r~~~l 225 (855)
.|||-|.+ +|- +..-|.|+..+ ....++...+.+++-|+.|...|. .||..++|.... ..-++.+
T Consensus 365 ~GGW~f~~~~~~~pd~dd----Ta~~L~AL~~~-~~~~~~~~~~~i~ra~~wLl~~Qn--~dGgw~af~~~~~~~~l~~~ 437 (635)
T TIGR01507 365 PGGWAFQFDNVYYPDVDD----TAVVVWALNGL-RLPDERRRRDAMTKAFRWIAGMQS--SNGGWGAFDVDNTSDLLNHI 437 (635)
T ss_pred CCccCCCCCCCCCCCchh----HHHHHHHHHHc-CCCccccchHHHHHHHHHHHHhcC--CCCCEecccCCcchhHHhcC
Confidence 58887753 221 45667777654 223456777899999999999999 999998874211 0101111
Q ss_pred c--------cccccchhhHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHH
Q 043003 226 V--------YVWAPYYTIHKIMAGLLDQYTLANNGQALNITIWMADYFNTR 268 (855)
Q Consensus 226 ~--------~~w~pyy~~HkI~aGLld~Y~~TG~~kaL~ia~r~AD~~~~r 268 (855)
. +.=.+=+|+|.+++ | ...|..+.-+.+.|..+|+.+.
T Consensus 438 ~f~d~~~~~D~~~~d~Ta~~l~a-l----~~~g~~~~~~~i~rav~~L~~~ 483 (635)
T TIGR01507 438 PFCDFGAVTDPPTADVTARVLEC-L----GSFGYDDAWPVIERAVEYLKRE 483 (635)
T ss_pred CccccccccCCCCccHHHHHHHH-H----HHhCCCchhHHHHHHHHHHHHc
Confidence 0 10012246665543 3 3344444456778888888764
No 82
>COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) [Translation, ribosomal structure and biogenesis]
Probab=32.02 E-value=79 Score=29.76 Aligned_cols=36 Identities=17% Similarity=0.182 Sum_probs=26.7
Q ss_pred CceEEECCccccCCCCCCeEEEEeecCCCCEEEEEecceeEEEec
Q 043003 567 GGKATLNKDNLQIPSPGNFLSVTRAWSPDEKLFIQLPINLRTEAI 611 (855)
Q Consensus 567 ~~~i~VNG~~~~~~~~ggY~~I~R~Wk~GD~V~L~LPm~lr~~~~ 611 (855)
+-.|.|||+.++... .=+.||+|+|.|.-......+
T Consensus 33 ~GrV~vNG~~aKpS~---------~VK~GD~l~i~~~~~~~~v~V 68 (100)
T COG1188 33 GGRVKVNGQRAKPSK---------EVKVGDILTIRFGNKEFTVKV 68 (100)
T ss_pred CCeEEECCEEccccc---------ccCCCCEEEEEeCCcEEEEEE
Confidence 458999999885422 226899999999877776554
No 83
>PF13243 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 3SAE_A 3SDV_A 3SDT_A 3SDQ_A 3SDU_A.
Probab=31.67 E-value=20 Score=32.74 Aligned_cols=59 Identities=12% Similarity=0.033 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHhhCCCcccccCCchhhhhhhccccccccchhhHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHh
Q 043003 192 MDAVMSVLSECQKKIGTGYLSAFPSEFFDRLENLVYVWAPYYTIHKIMAGLLDQYTLANNGQALNITIWMADYFNTRV 269 (855)
Q Consensus 192 ~d~~Vd~L~~~Q~~~~DGYL~a~~~~~~~r~~~l~~~w~pyy~~HkI~aGLld~Y~~TG~~kaL~ia~r~AD~~~~r~ 269 (855)
|+..|+.|.+.|. +||..+.. +.. . .+. .++++.++...++.+..+.+.|.++|+.++-
T Consensus 1 i~~~~~~l~~~Q~--~dG~W~~~-------~~~--~---~~~-----t~~~~~al~~~~~~~~~~ai~ka~~~l~~~Q 59 (109)
T PF13243_consen 1 IKRAAEWLLSQQN--PDGSWGYN-------WGS--D---VFV-----TAALILALAAAGDAAVDEAIKKAIDWLLSHQ 59 (109)
T ss_dssp -----------------------------------------------------------TS-SSBSSHHHHHHHHH--
T ss_pred Ccccccccccccc--cccccccc-------ccc--c---ccc-----cccccccccccCCCCcHHHHHHHHHHHHHhc
Confidence 4678899999999 89877421 110 0 111 2234456666688889999999999999864
No 84
>PF05726 Pirin_C: Pirin C-terminal cupin domain; InterPro: IPR008778 This entry represents C-terminal domain of Pirin proteins from both eukaryotes and prokaryotes. The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures []. Pirin is composed of two structurally similar domains arranged face to face. The N-terminal domain additionally features four beta-strands, and the C-terminal domain also includes four additional -strands and a short alpha-helix. Although the two domains are similar, the C-terminal domain of Pirin differs from the N-terminal domain as it does not contain a metal binding site and its sequence does not contain the conserved metal-coordinating residues []. Pirin is confirmed to be a member of the cupin superfamily on the basis of primary sequence and structural similarity. The presence of a metal binding site in the N-terminal beta-barrel of Pirin, may be significant in its role in regulating NFI DNA replication and NF-kappaB transcription factor activity []. Pirin structure has been found to closely resemble members of the cupin superfamily. Pirin contains the two characteristic sequences of the cupin superfamily, namely PG-(X)5-HXH-(X)4-E-(X)6-G and G-(X)5-PXG-(X)2-H-(X)3-N separated by a variable stretch of 15-50 amino acids. These motifs are best conserved in the N-terminal where the conserved histidine and glutamic acid residues correspond to the metal-coordinating residues. The C-terminal domain motifs lack the metal binding residues normally associated with the cupin fold []. Pirin was identified to be a metal-binding protein [], and was found that the metal-binding residues of Pirins are highly conserved across mammals, plants, fungi, and prokaryotic organisms. Pirin acts as a cofactor for the transcription factor NFI, the regulatory mechanism of which is generally believed to require the assistance of a metal ion []. Structural data supports the hypothesis that the bound iron of Pirin may participate in this transcriptional regulation by enhancing and stabilising the formation of the p50,Bcl3,DNA complex []. Metals have been implicated directly or indirectly in the NF-kappaB family of transcription factors that control expression of a number of early response genes associated with inflammatory responses, cell growth, cell cycle progression, and neoplastic transformation []. However, most metal-dependent transcription factors are DNA-binding proteins that bind to specific sequences when the metal binds to the protein. Pirin, on the other hand, appears to function differently and bind to the transcription factor DNA complex [].; PDB: 1J1L_A 3ACL_A 2P17_A.
Probab=30.60 E-value=1.1e+02 Score=28.38 Aligned_cols=52 Identities=10% Similarity=0.289 Sum_probs=32.7
Q ss_pred eEEECCccccCCCCCCeEEEEeecCCCCEEEEEec-ceeEEE-----ecCCCcccccCeEEEeecceeEEe
Q 043003 569 KATLNKDNLQIPSPGNFLSVTRAWSPDEKLFIQLP-INLRTE-----AIKDDRPQYASLQAIFYGPYLLAG 633 (855)
Q Consensus 569 ~i~VNG~~~~~~~~ggY~~I~R~Wk~GD~V~L~LP-m~lr~~-----~~~d~~~~~~~~vAv~rGPlVla~ 633 (855)
.+.|||+... ..++..+.++ +||.|+|+-. -..|+. +++.- -+.|||+|+.-
T Consensus 30 ~~~v~~~~~~-~~~~~~~~l~----~g~~i~~~a~~~~a~~lll~GePl~Ep--------i~~~GpFVmnt 87 (104)
T PF05726_consen 30 SVEVGGEEDP-LEAGQLVVLE----DGDEIELTAGEEGARFLLLGGEPLNEP--------IVQYGPFVMNT 87 (104)
T ss_dssp EEEETTTTEE-EETTEEEEE-----SECEEEEEESSSSEEEEEEEE----S----------EEETTEEESS
T ss_pred cEEECCCcce-ECCCcEEEEC----CCceEEEEECCCCcEEEEEEccCCCCC--------EEEECCcccCC
Confidence 4677877611 1256677776 8899999998 677764 33321 47899999853
No 85
>KOG2429 consensus Glycosyl hydrolase, family 47 [Carbohydrate transport and metabolism]
Probab=30.34 E-value=1.4e+02 Score=36.08 Aligned_cols=27 Identities=26% Similarity=0.364 Sum_probs=23.3
Q ss_pred hHHHHHHHHHHccCCcchHHHHHHHHH
Q 043003 407 YNMLKVSRYLFKWTKQVTYADYYERAL 433 (855)
Q Consensus 407 ~nmlkl~~~Lf~~tgd~~YaD~~ERaL 433 (855)
-+++.++-.||+.|+|+.|.+.=|-.+
T Consensus 374 PElvEStyyLYrATkdp~yL~vG~~~l 400 (622)
T KOG2429|consen 374 PELVESTYYLYRATKDPFYLHVGEDML 400 (622)
T ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 378899999999999999999887655
No 86
>PHA02651 IL-1 receptor antagonist; Provisional
Probab=30.13 E-value=53 Score=33.49 Aligned_cols=40 Identities=23% Similarity=0.253 Sum_probs=24.9
Q ss_pred eEEEeecCCCCCCeEEEeecCCCCeEEEeccccCCCceEEEee
Q 043003 756 VFQVNAGLDGKPDTVSLESVSRKGCFVFSDVNLKAGTALKLNC 798 (855)
Q Consensus 756 ~f~~vpgl~g~~~~vsles~~~pg~~~~~~~~~~~g~~~~~~~ 798 (855)
.|.+--.=.| .+.+|||+.+||||+.... -.....|.+.-
T Consensus 105 RFlFyr~~sG--~tstFESaafPgWfIsTs~-~e~~~PV~Lt~ 144 (165)
T PHA02651 105 RFAFIRSDNG--HTSTFESVAFPGWFLCTSS-GDGIEPVGLTY 144 (165)
T ss_pred eEEEEEccCC--CceEEEecCCCCcEEEecc-ccCCcceEeec
Confidence 3443333345 4999999999999997521 11124677754
No 87
>PLN03012 Camelliol C synthase
Probab=26.26 E-value=3.9e+02 Score=33.82 Aligned_cols=82 Identities=12% Similarity=0.050 Sum_probs=49.2
Q ss_pred hhHHHHHHHHHHHhCCC---hHHHHHHHHHHHHHHHHHhhCCCcccccCCchhhhhhhccccccccchhhHHHHHHHHHH
Q 043003 169 LGHYLSATAMAWASTRN---ETVKQKMDAVMSVLSECQKKIGTGYLSAFPSEFFDRLENLVYVWAPYYTIHKIMAGLLDQ 245 (855)
Q Consensus 169 ~Gh~LsA~A~~~a~t~D---~~L~~k~d~~Vd~L~~~Q~~~~DGYL~a~~~~~~~r~~~l~~~w~pyy~~HkI~aGLld~ 245 (855)
+++-|+|+++.-....+ ++....+..-|+.|.+.|+ +||=.. .+|. +=-.|.|..-+ .||
T Consensus 566 Ta~~l~aL~~f~~~~~~~r~~~i~~~i~rAv~~L~~~Q~--~DGsW~-------G~Wg----v~y~YgT~~aL-~aL--- 628 (759)
T PLN03012 566 TSSAIQALILFKQLYPDHRTEEINAFIKKAAEYIENIQM--LDGSWY-------GNWG----ICFTYGTWFAL-AGL--- 628 (759)
T ss_pred HHHHHHHHHHHhhhCcccchhhhHHHHHHHHHHHHHhcC--CCCCCc-------cccc----ccCCcHHHHHH-HHH---
Confidence 67778888775443333 4567899999999999999 776222 1121 11135555333 334
Q ss_pred HHHhCChhH-HHHHHHHHHHHHHH
Q 043003 246 YTLANNGQA-LNITIWMADYFNTR 268 (855)
Q Consensus 246 Y~~TG~~ka-L~ia~r~AD~~~~r 268 (855)
.+.|..-. -+.+.|.++|+.+.
T Consensus 629 -~a~g~~~~~~~~Irrav~fLls~ 651 (759)
T PLN03012 629 -AAAGKTFNDCEAIRKGVHFLLAA 651 (759)
T ss_pred -HHhCccCCCcHHHHHHHHHHHHh
Confidence 33343211 26778888999864
No 88
>TIGR01507 hopene_cyclase squalene-hopene cyclase. SHC is an essential prokaryotic gene in hopanoid (triterpenoid) biosynthesis. Squalene hopene cyclase, an integral membrane protein, directly cyclizes squalene into hopanoid products.
Probab=25.43 E-value=4.2e+02 Score=32.84 Aligned_cols=77 Identities=9% Similarity=-0.016 Sum_probs=48.0
Q ss_pred hhHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhCCCccc-ccCCchhhhhhhccccccccchhhHHHHHHHHHHHH
Q 043003 169 LGHYLSATAMAWASTRNETVKQKMDAVMSVLSECQKKIGTGYL-SAFPSEFFDRLENLVYVWAPYYTIHKIMAGLLDQYT 247 (855)
Q Consensus 169 ~Gh~LsA~A~~~a~t~D~~L~~k~d~~Vd~L~~~Q~~~~DGYL-~a~~~~~~~r~~~l~~~w~pyy~~HkI~aGLld~Y~ 247 (855)
+++-|+|++..- .+.. ...+++-|+.|.+.|+ +||.. +.+ .. + -.|.|++-++ ||.
T Consensus 454 Ta~~l~al~~~g---~~~~-~~~i~rav~~L~~~Q~--~dG~W~g~w--------g~-~---~~Y~T~~al~-aL~---- 510 (635)
T TIGR01507 454 TARVLECLGSFG---YDDA-WPVIERAVEYLKREQE--PDGSWFGRW--------GV-N---YLYGTGAVLS-ALK---- 510 (635)
T ss_pred HHHHHHHHHHhC---CCch-hHHHHHHHHHHHHccC--CCCCCccCC--------CC-c---cccHHHHHHH-HHH----
Confidence 567777776531 1222 7788999999999999 88853 432 11 1 1455554443 352
Q ss_pred HhCChhHHHHHHHHHHHHHHH
Q 043003 248 LANNGQALNITIWMADYFNTR 268 (855)
Q Consensus 248 ~TG~~kaL~ia~r~AD~~~~r 268 (855)
..|.+..-+.+.|.++|+.+.
T Consensus 511 ~~g~~~~~~~i~rAv~wL~~~ 531 (635)
T TIGR01507 511 AVGIDTREPYIQKALAWLESH 531 (635)
T ss_pred HcCCCcccHHHHHHHHHHHHh
Confidence 345544456788888998764
No 89
>smart00125 IL1 Interleukin-1 homologues. Cytokines with various biological functions. Interluekin 1 alpha and beta are also known as hematopoietin and catabolin.
Probab=24.29 E-value=5e+02 Score=26.15 Aligned_cols=61 Identities=16% Similarity=0.152 Sum_probs=35.0
Q ss_pred CCcceecCCCCCCCcceecccCCcceEEecCCCCceEEEeecCCCCCCeEEEeecCCCCeEEEeccccCCCceEEEee
Q 043003 721 ISKQVMFEPFDFPGKLLMQQGNNDSLVIANNPGNSVFQVNAGLDGKPDTVSLESVSRKGCFVFSDVNLKAGTALKLNC 798 (855)
Q Consensus 721 ~g~~v~lepfd~Pg~~v~~~~~~~~l~v~~~~~~s~f~~vpgl~g~~~~vsles~~~pg~~~~~~~~~~~g~~~~~~~ 798 (855)
+.+.+.||.-|.+..+ .. ..+..|..---=.| .+.+|||+.+||+|+... ......|.+-.
T Consensus 74 ~~P~LqLE~v~~~~~~-~~------------e~~~rFlFyk~~~G--~~~~FeSaa~PgWfIsTs--~~~~~PV~l~~ 134 (147)
T smart00125 74 DEPTLQLEMVDPPKYP-KK------------EMEKRFVFEKHEIG--NKVEFESAAHPNWFISTS--QEEDKPVFLGN 134 (147)
T ss_pred CeEEEEEEcccccccc-Cc------------CcceeEEEEEccCC--CceEEEEccCCCcEEEec--cccCceEEeec
Confidence 4456677766555432 11 12233444332234 489999999999999742 12344576654
No 90
>PF13464 DUF4115: Domain of unknown function (DUF4115)
Probab=22.83 E-value=5.1e+02 Score=22.51 Aligned_cols=25 Identities=8% Similarity=-0.008 Sum_probs=18.1
Q ss_pred eeeEEEEeecCCcCCCCceEEECCccccCC
Q 043003 551 VSSVLNLRIPFWANPNGGKATLNKDNLQIP 580 (855)
Q Consensus 551 ~~ftL~LRIP~Wa~~~~~~i~VNG~~~~~~ 580 (855)
.++.|.+--|+ +.+|++||+++...
T Consensus 38 ~~~~i~iGna~-----~v~v~~nG~~~~~~ 62 (77)
T PF13464_consen 38 EPFRIRIGNAG-----AVEVTVNGKPVDLL 62 (77)
T ss_pred CCEEEEEeCCC-----cEEEEECCEECCCC
Confidence 34666665553 68999999999863
No 91
>TIGR03000 plancto_dom_1 Planctomycetes uncharacterized domain TIGR03000. Domains described by this model are found, so far, only in the Planctomycetes (Pirellula sp. strain 1 and Gemmata obscuriglobus), in up to six proteins per genome, and may be duplicated within a protein. The function is unknown.
Probab=22.54 E-value=4.2e+02 Score=23.77 Aligned_cols=21 Identities=14% Similarity=0.401 Sum_probs=17.1
Q ss_pred eEEEEeecCCcCCCCceEEECCcccc
Q 043003 553 SVLNLRIPFWANPNGGKATLNKDNLQ 578 (855)
Q Consensus 553 ftL~LRIP~Wa~~~~~~i~VNG~~~~ 578 (855)
.+|.|.+| + +++|.|||++..
T Consensus 3 a~itv~vP--a---dAkl~v~G~~t~ 23 (75)
T TIGR03000 3 ATITVTLP--A---DAKLKVDGKETN 23 (75)
T ss_pred eEEEEEeC--C---CCEEEECCeEcc
Confidence 47888899 2 689999999865
No 92
>cd02889 SQCY Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. Bacterial SQCY catalyzes the convertion of squalene to hopene or diplopterol. Eukaryotic OSQCY transforms the 2,3-epoxide of squalene to compounds such as, lanosterol (a metabolic precursor of cholesterol and steroid hormones) in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain. This group also contains SQCY-like archael sequences and some bacterial SQCY's which lack this minor domain.
Probab=21.87 E-value=3.4e+02 Score=30.06 Aligned_cols=87 Identities=7% Similarity=-0.049 Sum_probs=45.5
Q ss_pred hCCC-hHHHHHHHHHHHHHHHHHh-hCCCcccccCCchhhhhhh--ccccccc-cchhhHHHHHHHHHHHHHh--CChhH
Q 043003 182 STRN-ETVKQKMDAVMSVLSECQK-KIGTGYLSAFPSEFFDRLE--NLVYVWA-PYYTIHKIMAGLLDQYTLA--NNGQA 254 (855)
Q Consensus 182 ~t~D-~~L~~k~d~~Vd~L~~~Q~-~~~DGYL~a~~~~~~~r~~--~l~~~w~-pyy~~HkI~aGLld~Y~~T--G~~ka 254 (855)
.++. ++..+.+++.++.|.++|. ..++|....++......|. .....|. ...|. .++.+|+.+.... |+...
T Consensus 37 ~~g~~~~~~~~~~ka~~~l~~~q~~~~~~~~~~~~~~~~~Ggw~y~~~~~~~~~~~~Ta-~~l~al~~~~~~~~~~~~~~ 115 (348)
T cd02889 37 EAGLAPEFDPALKKALEWLLKSQIRDNPDDWKVKYRHLRKGGWAFSTANQGYPDSDDTA-EALKALLRLQKKPPDGKKVS 115 (348)
T ss_pred HcCCCCccCHHHHHHHHHHHhcCCCCCCCchhhcCCCCCCCcCcccCcCCCCCCCCChH-HHHHHHHHhhccCcccchhh
Confidence 3444 5788899999999999993 1223322222111000110 0000010 01222 2334465555555 34667
Q ss_pred HHHHHHHHHHHHHHh
Q 043003 255 LNITIWMADYFNTRV 269 (855)
Q Consensus 255 L~ia~r~AD~~~~r~ 269 (855)
.+.+.+.++|+.+.-
T Consensus 116 ~~~i~~a~~~L~~~Q 130 (348)
T cd02889 116 RERLYDAVDWLLSMQ 130 (348)
T ss_pred HHHHHHHHHHHHHhc
Confidence 888999999999763
No 93
>COG1554 ATH1 Trehalose and maltose hydrolases (possible phosphorylases) [Carbohydrate transport and metabolism]
Probab=20.75 E-value=4.3e+02 Score=33.42 Aligned_cols=110 Identities=18% Similarity=0.237 Sum_probs=66.2
Q ss_pred CCCCCCcccCCcccccchhhHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhh-CCCcccccCCc--------hhhhh
Q 043003 151 GAPYGGWEDQKMELRGHFLGHYLSATAMAWASTRNETVKQKMDAVMSVLSECQKK-IGTGYLSAFPS--------EFFDR 221 (855)
Q Consensus 151 g~~~gGWe~~dsdlrGH~~Gh~LsA~A~~~a~t~D~~L~~k~d~~Vd~L~~~Q~~-~~DGYL~a~~~--------~~~~r 221 (855)
|+.|+|-.|+|+++ |+-. .++.+.-..-+..+.+=...|..||++ ...||.|+.+. +.-.+
T Consensus 345 GegY~GhvfWDTEi-------f~lP---~l~~t~P~vArnLL~YR~~~L~~Ak~nA~~~G~~GAlyPW~S~~~G~E~t~~ 414 (772)
T COG1554 345 GEGYGGHVFWDTEI-------FVLP---FLLFTDPEVARNLLLYRYNTLPGAKENAKKYGLKGALYPWESATDGDECTPE 414 (772)
T ss_pred ccccCCeeeecchH-------Hhhh---hhhccChHHHHHHHHHHHhcCHHHHHHHHHcCCCcccceeeecCCCCccCCc
Confidence 57899999999875 2222 233343444556667777788888863 36899998541 11122
Q ss_pred hhc--cccccccchh---hHH---HHHHHHHHHHHhCChhHH-----HHHHHHHHHHHHHhh
Q 043003 222 LEN--LVYVWAPYYT---IHK---IMAGLLDQYTLANNGQAL-----NITIWMADYFNTRVQ 270 (855)
Q Consensus 222 ~~~--l~~~w~pyy~---~Hk---I~aGLld~Y~~TG~~kaL-----~ia~r~AD~~~~r~~ 270 (855)
|+- .+..|.+++. .|. |-.++-.|+++|||++.| ++....|-+..+|..
T Consensus 415 w~~~~~~~~~~~~~~~~E~Hin~dIAyAv~~Y~q~TgD~~yl~~~G~evl~etArFW~srv~ 476 (772)
T COG1554 415 WEATFERTGWRVASSDREIHINADIAYAVWNYWQVTGDDSYLADCGLEVLLETARFWASRVH 476 (772)
T ss_pred ccccccccccccCccccceehhhHHHHHHHHHHhhcCcHHHHHhcCHHHHHHHHHHHHHHhe
Confidence 221 2223434332 444 333466788899999854 577777877777753
Done!