Query 043004
Match_columns 295
No_of_seqs 145 out of 1180
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 11:49:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043004.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043004hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00251 fatty acid elongase; 100.0 1E-67 2.2E-72 487.3 16.3 254 12-275 6-270 (272)
2 PF01151 ELO: GNS1/SUR4 family 100.0 1.3E-66 2.9E-71 475.9 20.6 236 26-275 2-250 (250)
3 KOG3071 Fatty acyl-CoA elongas 100.0 1.8E-63 4E-68 455.6 17.2 254 7-279 3-270 (274)
4 KOG3072 Long chain fatty acid 100.0 3.3E-62 7.2E-67 444.1 8.9 242 15-271 23-269 (282)
5 KOG3071 Fatty acyl-CoA elongas 41.9 43 0.00092 31.4 4.6 71 210-285 199-272 (274)
6 KOG3187 Protein tyrosine phosp 32.0 4E+02 0.0086 24.3 15.0 78 133-210 54-140 (223)
7 KOG2934 Uncharacterized conser 21.2 69 0.0015 28.2 2.0 33 184-219 79-114 (204)
8 PHA02650 hypothetical protein; 16.2 4.6E+02 0.0099 20.0 5.2 21 250-270 56-76 (81)
9 PF06210 DUF1003: Protein of u 14.5 6.4E+02 0.014 20.1 7.4 56 27-88 1-56 (108)
10 COG5593 Nucleic-acid-binding p 11.8 1.6E+02 0.0034 30.6 2.1 19 258-276 657-675 (821)
No 1
>PTZ00251 fatty acid elongase; Provisional
Probab=100.00 E-value=1e-67 Score=487.32 Aligned_cols=254 Identities=17% Similarity=0.251 Sum_probs=212.5
Q ss_pred CCCcccccccCcCCCC-CChHHHHHHHHHHHHHHhhhhhhhccccCCCCCCC-CCChhHHHHHHHHHHHHHHHHHHHHHH
Q 043004 12 HPTVVNFRWNNAQSWG-STWSFLFAAISTYVVAATFLHVFLNLVLPRNRRIP-LGPIPAIHSLAITLISVVTFVGILLST 89 (295)
Q Consensus 12 ~~~~~~F~~~~~~~~m-~~~~~~~~i~~~Yl~~V~~l~~~~~~~M~~Rkp~~-Lk~~l~~~N~~l~~~S~~~~~~~~~~~ 89 (295)
+-.+.+|+-++.++|+ +||++++.++++|+++|+.++..|+..||+|||++ ||+++++||++|+++|+++++++++..
T Consensus 6 ~~~~~~f~~~~~~~wl~~~~~~~~~i~~~Yl~~V~~Gp~~M~~~~~~Rkp~~~Lr~~l~~yNl~l~v~s~~~~~~~~~~~ 85 (272)
T PTZ00251 6 NYGINHYDGHAVQKWLASNVDICVYIAAAYLTFVFKGPQLVDAIFHGNPPVPLIKKCWALWNIGLSVFSMYGVYRVVPPL 85 (272)
T ss_pred ccccccCCcHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhhccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567899988888887 99999999999999999954444433345799999 999999999999999999999998776
Q ss_pred HHhhhhccccccccccCCceeeccCCCCCC-CCccchhhHHHHHHHhhhhhhhhHHHHhccCceeeEEEeccchhhhhhh
Q 043004 90 AAEIRETSWSWRRTHTTAFQWLLCFPLGTR-PSGRVFFWSYVFYLSRFLHLLRTFFSILKHRKLTFFQLFNQSMLICMSF 168 (295)
Q Consensus 90 ~~~~~~~~~~~~~~~~~g~~~~~C~~~~~~-~~~~~~~~~~lf~lSK~~El~DTvf~VLrK~~lsFLHvYHH~~~~~~~w 168 (295)
+.... +.|+.+..|+..+++ .++++++|+|+|++||++||+||+|+||||||+||||||||++|++++|
T Consensus 86 ~~~~~----------~~g~~~~~C~~~~~~~~~~~~~~~~~~f~lsK~~El~DTvF~VLRKKqvsFLHvYHH~~~~~~~w 155 (272)
T PTZ00251 86 LNNLR----------KYGLHDTLCTFREDEFYTGKVGVAMGLFSISKVPEFGDTFFLIMGGKKLPFLSWFHHVTIFLYAW 155 (272)
T ss_pred HHHHH----------hcCcceeeecCCCCcchhHHHHHHHHHHHHHHHHHHHhHhhhhhcCCCchHHHHHHHHHHHHHHH
Confidence 54321 257778889865544 3578999999999999999999999999999999999999999999999
Q ss_pred eeeeeccchhHHHHHHhhHHHHhhhhhHHHhhcCCCC---cccccchhhhhHHHHHHHHHHhhhhhhhc---cCCCCCch
Q 043004 169 LWLEFSQSFQVVAILLTTLLYSVVYGYRFWTAIGLPS---ACFPFVVNCQVVLLVCNLICHFGVLLLHV---LKGGCNGI 242 (295)
Q Consensus 169 ~~~~~~~~~~~~~~~~Ns~VH~iMY~YY~lsa~g~~~---~wk~~IT~lQivQFv~~~~~~~~~~~~~~---~~~~C~~~ 242 (295)
..+..+.+...+++++|++||++||+||+++|+|+|+ ||||+||.+||+||+++++++.+.++... .+++|+++
T Consensus 156 ~~~~~g~~~~~~~~~lNs~VH~iMY~YY~lsa~g~~~~~~~~kk~IT~lQi~Qfv~~~~~~~~~~~~~~~~~~~~~C~~~ 235 (272)
T PTZ00251 156 MSYQQGSSIWICAAAMNYFVHSIMYFYFALSEAGFKKLVKPFAMYITLLQITQMVGGLFVSGYVIVQKLTKGDPKGCSGT 235 (272)
T ss_pred HHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCc
Confidence 9886555555567999999999999999999999983 48999999999999999999888876421 13479986
Q ss_pred H-HHHHH-HHHHHHHHHHHHHHHHHHcccCCCCCC
Q 043004 243 G-AWTFN-SVLNAVILLLFMNFYVKMYLRNKKIGD 275 (295)
Q Consensus 243 ~-~~~~~-~~~~~s~l~LF~~Fy~k~Y~~k~~~~~ 275 (295)
. ..... .++++||++||+|||+|+|.+|+++++
T Consensus 236 ~~~~~~~~~~~~~s~l~LF~~Fy~~~Y~~~~~~~~ 270 (272)
T PTZ00251 236 TMATARGQLMIYIFNFYLFSEMFVKGYVLPRKAKA 270 (272)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCC
Confidence 5 44444 448899999999999999988755543
No 2
>PF01151 ELO: GNS1/SUR4 family; InterPro: IPR002076 This group of eukaryotic integral membrane proteins are evolutionary related, but exact function has not yet clearly been established. The proteins have from 290 to 435 amino acid residues. Structurally, they seem to be formed of three sections: a N-terminal region with two transmembrane domains, a central hydrophilic loop and a C-terminal region that contains from one to three transmembrane domains. Members of this family are involved in long chain fatty acid elongation systems that produce the 26-carbon precursors for ceramide and sphingolipid synthesis []. Predicted to be integral membrane proteins, in eukaryotes they are probably located on the endoplasmic reticulum. Yeast ELO3 (P40319 from SWISSPROT) affects plasma membrane H+-ATPase activity, and may act on a glucose-signalling pathway that controls the expression of several genes that are transcriptionally regulated by glucose such as PMA1 []. ; GO: 0016021 integral to membrane
Probab=100.00 E-value=1.3e-66 Score=475.95 Aligned_cols=236 Identities=22% Similarity=0.414 Sum_probs=205.3
Q ss_pred CCCChHHHHHHHHHHHHHHhhhhhhhccccCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccc
Q 043004 26 WGSTWSFLFAAISTYVVAATFLHVFLNLVLPRNRRIPLGPIPAIHSLAITLISVVTFVGILLSTAAEIRETSWSWRRTHT 105 (295)
Q Consensus 26 ~m~~~~~~~~i~~~Yl~~V~~l~~~~~~~M~~Rkp~~Lk~~l~~~N~~l~~~S~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (295)
+++||++++.++++|+++|+.+++. ||+|||++||+++.+||++|+++|++++++++++...... +
T Consensus 2 l~~~~~~~~~~~~~Yl~~V~~g~~~----m~~Rkp~~Lk~~~~~~N~~l~~~S~~~~~~~~~~~~~~~~----------~ 67 (250)
T PF01151_consen 2 LMSNPWFPILIVVLYLLFVFLGPRF----MKNRKPFNLKTLIIVYNLFLVVFSAYMFYGILPALFSSLF----------K 67 (250)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHH----HhhCCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------h
Confidence 3599999999999999999765544 8999999999999999999999999999999986554321 2
Q ss_pred CCceeeccC----CCCCCCCccchhhHHHHHHHhhhhhhhhHHHHhccCceeeEEEeccchhhhhhheeeeeccchhHH-
Q 043004 106 TAFQWLLCF----PLGTRPSGRVFFWSYVFYLSRFLHLLRTFFSILKHRKLTFFQLFNQSMLICMSFLWLEFSQSFQVV- 180 (295)
Q Consensus 106 ~g~~~~~C~----~~~~~~~~~~~~~~~lf~lSK~~El~DTvf~VLrK~~lsFLHvYHH~~~~~~~w~~~~~~~~~~~~- 180 (295)
+|+.+..|+ +++....+++++|.|+|++||++|++||+|+||||||+||||||||++|++++|..++..++++.+
T Consensus 68 ~g~~~~~C~~~~~~~~~~~~~~~~~~~~~fylSK~~EllDTvflvLrkK~lsfLHvYHH~~~~~~~w~~~~~~~~~~~~~ 147 (250)
T PF01151_consen 68 GGLYSSFCQPVDFDPDSYSSGRVGFWYWLFYLSKYYELLDTVFLVLRKKQLSFLHVYHHASTLLYCWISYKYGPGGQIWF 147 (250)
T ss_pred cccccccccccCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHhhhhhhhhhhhheeeeccccchhH
Confidence 588888994 333445678999999999999999999999999999999999999999999999999999666655
Q ss_pred HHHHhhHHHHhhhhhHHHhhcCCC---CcccccchhhhhHHHHHHHHHHhhhhhhhcc-CCCC---CchH-HHHHHHHHH
Q 043004 181 AILLTTLLYSVVYGYRFWTAIGLP---SACFPFVVNCQVVLLVCNLICHFGVLLLHVL-KGGC---NGIG-AWTFNSVLN 252 (295)
Q Consensus 181 ~~~~Ns~VH~iMY~YY~lsa~g~~---~~wk~~IT~lQivQFv~~~~~~~~~~~~~~~-~~~C---~~~~-~~~~~~~~~ 252 (295)
++++|++||++||+||+++|+|.| +||||+||.+||+||+++++++.++++.+.. +.+| ++|. ....+.+++
T Consensus 148 ~~~~N~~VH~iMY~YY~l~a~g~~~~~~~~k~~IT~~Qi~QF~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~ 227 (250)
T PF01151_consen 148 IAALNSFVHVIMYSYYFLSALGIRKVPRWWKKYITSLQIVQFVIGIVHTVYALYYYFFPGGDCDTSGYPKFNAILGLVYY 227 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccchhHHHHHHhHHhhhhhHHHHHHHHHHhheeccCCCCCCcchhHHHHHHHHHHHH
Confidence 779999999999999999999998 4799999999999999999999988876443 3689 5654 455566699
Q ss_pred HHHHHHHHHHHHHHcccCCCCCC
Q 043004 253 AVILLLFMNFYVKMYLRNKKIGD 275 (295)
Q Consensus 253 ~s~l~LF~~Fy~k~Y~~k~~~~~ 275 (295)
+|+++||.|||+|+|.+|++|||
T Consensus 228 ~s~l~LF~~Fy~~~Y~~~~~~k~ 250 (250)
T PF01151_consen 228 VSYLYLFINFYIKSYIKKKKKKK 250 (250)
T ss_pred HHHHHHHHHHHHHHhCcCCCCCC
Confidence 99999999999999998877764
No 3
>KOG3071 consensus Fatty acyl-CoA elongase/Polyunsaturated fatty acid specific elongation enzyme [Lipid transport and metabolism]
Probab=100.00 E-value=1.8e-63 Score=455.59 Aligned_cols=254 Identities=31% Similarity=0.545 Sum_probs=220.8
Q ss_pred hhhhcCCCcccccccCcC----CCCCChHHHHHHHHHHHHHHhhhhhhhccccCCCCCCCCCChhHHHHHHHHHHHHHHH
Q 043004 7 YWLSEHPTVVNFRWNNAQ----SWGSTWSFLFAAISTYVVAATFLHVFLNLVLPRNRRIPLGPIPAIHSLAITLISVVTF 82 (295)
Q Consensus 7 ~~~~~~~~~~~F~~~~~~----~~m~~~~~~~~i~~~Yl~~V~~l~~~~~~~M~~Rkp~~Lk~~l~~~N~~l~~~S~~~~ 82 (295)
|+..++|.+.+|+|.+++ +++++++++..++.+|+ +|..+||. +|+||||++||.++.+||++|++.|++++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~v~~~~l~s~~~~~~il~~yl-~v~~~G~~---~m~nrkp~~l~~~~~vyN~~~vl~s~~i~ 78 (274)
T KOG3071|consen 3 YPLAEHPLIDNFRWSPDDRVRSPLLSSPWPLLSILLAYL-FVLKLGPK---LMRNRKPLKLRGLSQVYNLGQVLLSAAIF 78 (274)
T ss_pred chhhhchHHHHhcCCCCccccchhccCcHHHHHHHHHHH-HHHHhcHh---hhccCCCchHHHHHHHHHHHHHHHHHHHH
Confidence 788999999999999886 45799999999999999 77788888 49999999999999999999999999976
Q ss_pred HHHHHHHHHhhhhccccccccccCCceeeccCCCCCCCCccchhhHHHHHHHhhhhhhhhHHHHhcc--CceeeEEEecc
Q 043004 83 VGILLSTAAEIRETSWSWRRTHTTAFQWLLCFPLGTRPSGRVFFWSYVFYLSRFLHLLRTFFSILKH--RKLTFFQLFNQ 160 (295)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~C~~~~~~~~~~~~~~~~lf~lSK~~El~DTvf~VLrK--~~lsFLHvYHH 160 (295)
.+........ ...++....|+|.+++.++++.+|+|+||+||+.||+||+|+|||| ||+||||+|||
T Consensus 79 ~~~~~~~~~~-----------~~y~l~c~~~~~~~~~~~~r~~~~~~~yylsKflel~DTvFfVLRKk~rqlsFLHvyHH 147 (274)
T KOG3071|consen 79 LEGELWRWLK-----------TAYNLRCQPCFPSDHEPKLRERFWSYLYYLSKFLELLDTVFFVLRKKDRQLSFLHVYHH 147 (274)
T ss_pred HHHHHHhhhc-----------cccceEEEecCCCCCCcceeehHHHHHHHHHHHHHHHhheeeEEEccCCceEEEEEEec
Confidence 6555433211 1246677778888888899999999999999999999999999999 99999999999
Q ss_pred chhhhhhheeeeeccch-hHHHHHHhhHHHHhhhhhHHHhhcCCCC----cccccchhhhhHHHHHHHHHHhhh-hhhhc
Q 043004 161 SMLICMSFLWLEFSQSF-QVVAILLTTLLYSVVYGYRFWTAIGLPS----ACFPFVVNCQVVLLVCNLICHFGV-LLLHV 234 (295)
Q Consensus 161 ~~~~~~~w~~~~~~~~~-~~~~~~~Ns~VH~iMY~YY~lsa~g~~~----~wk~~IT~lQivQFv~~~~~~~~~-~~~~~ 234 (295)
++|+..+|.++++.+++ +++.+.+|++||+|||+||+++|+|+++ |||+++|.+|++||++..++..++ ++.
T Consensus 148 ~~m~~~~~~~l~~~~~g~~~~~~~lNs~VHviMY~YYflsa~G~~v~~~lWWkky~t~vQlvqf~~~~~~~~~~~~~~-- 225 (274)
T KOG3071|consen 148 GVMAFLSYLWLKFYGGGHGFFAILLNSFVHVIMYGYYFLSAFGPRVQWYLWWKKYITIVQLVQFLILFVHTLYVHLFK-- 225 (274)
T ss_pred chHHHhhhheeEEeCCceeeeeeehhhhHHHHHHHHHHHHhhCcCccccchHHHHHHHHHHHHHHHHHHHHhheeeec--
Confidence 99999999999998854 5559999999999999999999999996 689999999999999999998887 553
Q ss_pred cCCCCCchHH-HHHH-HHHHHHHHHHHHHHHHHHcccCCCCCCcchh
Q 043004 235 LKGGCNGIGA-WTFN-SVLNAVILLLFMNFYVKMYLRNKKIGDASSA 279 (295)
Q Consensus 235 ~~~~C~~~~~-~~~~-~~~~~s~l~LF~~Fy~k~Y~~k~~~~~~~~k 279 (295)
++|..|.+ +++. .+..++|++||+|||+|+|+|+++++.++++
T Consensus 226 --~~c~~~~~~~~~~~~~~~~~~l~LF~nFY~~tY~k~~~~~~~~~~ 270 (274)
T KOG3071|consen 226 --PGCCFGIGAWAFNGSVINVSFLLLFSNFYIKTYKKPKKKKAKKKA 270 (274)
T ss_pred --CCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhhhh
Confidence 68999866 6665 4478899999999999999887666654333
No 4
>KOG3072 consensus Long chain fatty acid elongase [Lipid transport and metabolism]
Probab=100.00 E-value=3.3e-62 Score=444.08 Aligned_cols=242 Identities=16% Similarity=0.259 Sum_probs=217.7
Q ss_pred cccccccCcCCCC-CChHHHHHHHHHHHHHHhhhhhhhccccCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043004 15 VVNFRWNNAQSWG-STWSFLFAAISTYVVAATFLHVFLNLVLPRNRRIPLGPIPAIHSLAITLISVVTFVGILLSTAAEI 93 (295)
Q Consensus 15 ~~~F~~~~~~~~m-~~~~~~~~i~~~Yl~~V~~l~~~~~~~M~~Rkp~~Lk~~l~~~N~~l~~~S~~~~~~~~~~~~~~~ 93 (295)
..+|+.++...+| ++|...+.++++|+++|++++.. |+|||||+|++++.+||.++++||+.+++.+.+..+..+
T Consensus 23 ~~~F~~~~~~~~~~~~~~~si~is~~Y~v~if~~q~f----M~~RkpF~L~~pL~lWn~~La~FSi~g~lr~~~~~~~~~ 98 (282)
T KOG3072|consen 23 ETGFDSESVVKFFQEHWPLSIHISIAYLVLIFGGQNF----MKNRKPFQLTKPLNLWNFCLAAFSILGALRTIPEFLAVF 98 (282)
T ss_pred cCCCchHHHHHHHHhccchhHHHHHHHHHHHHHHHHH----HhcCCCCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666667888 88888999999999999998877 899999999999999999999999999999999887664
Q ss_pred hhccccccccccCCceeeccCCCCCCCCccchhhHHHHHHHhhhhhhhhHHHHhccCceeeEEEeccchhhhhhheeeee
Q 043004 94 RETSWSWRRTHTTAFQWLLCFPLGTRPSGRVFFWSYVFYLSRFLHLLRTFFSILKHRKLTFFQLFNQSMLICMSFLWLEF 173 (295)
Q Consensus 94 ~~~~~~~~~~~~~g~~~~~C~~~~~~~~~~~~~~~~lf~lSK~~El~DTvf~VLrK~~lsFLHvYHH~~~~~~~w~~~~~ 173 (295)
+. +|+..+.|++.+.. .+..++|+|+|.+||..|++||+|+||||||++|||||||+++++++|+++..
T Consensus 99 ~~----------~Gf~~s~C~~~~~~-~~~~~fW~~~fvlSK~~ElgDT~FiVLRKrPliFlHWYHHi~~~iy~~~~y~~ 167 (282)
T KOG3072|consen 99 RA----------AGFKGSYCDANNLG-LSVSGFWSWLFVLSKAPELGDTIFIVLRKRPLIFLHWYHHILVLIYAWHSYIE 167 (282)
T ss_pred Hh----------hhhheeeeecccCC-cchHHHHHHHHHHHhhhhhhceeEEEeccCccEEEechhhheeeeeeeeeccc
Confidence 33 79999999997633 36889999999999999999999999999999999999999999999999999
Q ss_pred ccchhHHHHHHhhHHHHhhhhhHHHhhcCCCC-cc-cccchhhhhHHHHHHHHHHhhhhhhhccCC-CCCc-hHHHHHHH
Q 043004 174 SQSFQVVAILLTTLLYSVVYGYRFWTAIGLPS-AC-FPFVVNCQVVLLVCNLICHFGVLLLHVLKG-GCNG-IGAWTFNS 249 (295)
Q Consensus 174 ~~~~~~~~~~~Ns~VH~iMY~YY~lsa~g~~~-~w-k~~IT~lQivQFv~~~~~~~~~~~~~~~~~-~C~~-~~~~~~~~ 249 (295)
..+.++|++.||.+||++||+||+++|+|+|+ ++ .+.||.+||+||+++...+..+.+.+.+++ .|+. +++..+++
T Consensus 168 ~~a~~rw~i~mNy~vHa~MY~YY~lrsl~ir~Pk~vam~iTtlQi~Qm~i~~~i~~~v~~~~~~~~~~c~~s~~~~~l~~ 247 (282)
T KOG3072|consen 168 KVAWGRWFIWMNYLVHAFMYSYYALRSLGIRLPKSVAMAITTLQIVQMVIGCYIGTHVYYVKHTHQLLCQQSYKNLSLCF 247 (282)
T ss_pred CCcCceEEEEEehhHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHheeeEEEEEEecCCeeeeeeccchhhHH
Confidence 99999999999999999999999999999995 44 899999999999999998887766554433 3997 57888888
Q ss_pred HHHHHHHHHHHHHHHHHcccCC
Q 043004 250 VLNAVILLLFMNFYVKMYLRNK 271 (295)
Q Consensus 250 ~~~~s~l~LF~~Fy~k~Y~~k~ 271 (295)
++|++|++||+|||.++|++|.
T Consensus 248 ~my~syfvLf~~Ff~~aYi~~g 269 (282)
T KOG3072|consen 248 LMYISYFVLFANFFYQAYIKKG 269 (282)
T ss_pred HHHHHHHHHHHHHHHHHHhhhc
Confidence 9999999999999999999984
No 5
>KOG3071 consensus Fatty acyl-CoA elongase/Polyunsaturated fatty acid specific elongation enzyme [Lipid transport and metabolism]
Probab=41.91 E-value=43 Score=31.44 Aligned_cols=71 Identities=18% Similarity=0.236 Sum_probs=47.0
Q ss_pred cchhhhhHHHHHHHHHHhhhhhhhccCCCCCch-HHHHHH-HHHH-HHHHHHHHHHHHHHcccCCCCCCcchhhhccCC
Q 043004 210 FVVNCQVVLLVCNLICHFGVLLLHVLKGGCNGI-GAWTFN-SVLN-AVILLLFMNFYVKMYLRNKKIGDASSAAEQSNG 285 (295)
Q Consensus 210 ~IT~lQivQFv~~~~~~~~~~~~~~~~~~C~~~-~~~~~~-~~~~-~s~l~LF~~Fy~k~Y~~k~~~~~~~~k~~~~n~ 285 (295)
+.|-+|++||+..++...+.... .=-.| -..... .... .++.+.|.--|.+=|.+.=+|+++++++...|+
T Consensus 199 Wkky~t~vQlvqf~~~~~~~~~~-----~~~~~~c~~~~~~~~~~~~~~~~~~l~LF~nFY~~tY~k~~~~~~~~~~~~ 272 (274)
T KOG3071|consen 199 WKKYITIVQLVQFLILFVHTLYV-----HLFKPGCCFGIGAWAFNGSVINVSFLLLFSNFYIKTYKKPKKKKAKKKASA 272 (274)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhe-----eeecCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhhhhcc
Confidence 67999999999998886654431 01112 233333 4444 688999999999999998777665444444443
No 6
>KOG3187 consensus Protein tyrosine phosphatase-like protein PTPLA (contains Pro instead of catalytic Arg) [General function prediction only]
Probab=32.00 E-value=4e+02 Score=24.30 Aligned_cols=78 Identities=15% Similarity=0.261 Sum_probs=50.7
Q ss_pred HHhhhhhhhhHHHHh---ccCc-eeeEEEeccchhhhhhheeeeeccchh--HHHHHHhhHHHHhhhhhHHHhhcCCCC-
Q 043004 133 LSRFLHLLRTFFSIL---KHRK-LTFFQLFNQSMLICMSFLWLEFSQSFQ--VVAILLTTLLYSVVYGYRFWTAIGLPS- 205 (295)
Q Consensus 133 lSK~~El~DTvf~VL---rK~~-lsFLHvYHH~~~~~~~w~~~~~~~~~~--~~~~~~Ns~VH~iMY~YY~lsa~g~~~- 205 (295)
+.--.-++|.+.... +-++ +++.|+-|-..+++..-+.....++.. .....+=+..-.+=|+||+.+.+|-.|
T Consensus 54 ~~Qtla~lEi~~~~~g~v~S~~v~t~~Qv~sRl~il~~i~~~~~~~~~~~~~~~l~~~ws~tEIiRY~fY~f~~~~~~p~ 133 (223)
T KOG3187|consen 54 FCQTLALLEIINASFGLVKSSPVVTLFQVSSRLFILWGIFHMCSIIQASAVVFFLLIAWSLTEIIRYSFYAFNLLGVLPK 133 (223)
T ss_pred HHHHHHHHHHHHHHhccccCCceeeeeeecccceehhhhhhccchhhccchHHHHHHHHHHHHHHHHHHHHHHhccCCch
Confidence 333344455554443 3333 577899888887777666666555332 335557788889999999999998865
Q ss_pred --ccccc
Q 043004 206 --ACFPF 210 (295)
Q Consensus 206 --~wk~~ 210 (295)
.|-||
T Consensus 134 ~l~wlRY 140 (223)
T KOG3187|consen 134 LLTWLRY 140 (223)
T ss_pred hhhHhhh
Confidence 25554
No 7
>KOG2934 consensus Uncharacterized conserved protein, contains Josephin domain [General function prediction only]
Probab=21.16 E-value=69 Score=28.17 Aligned_cols=33 Identities=9% Similarity=-0.108 Sum_probs=26.6
Q ss_pred HhhHHHHhhhhhHHHhhcCCC-Ccc--cccchhhhhHHH
Q 043004 184 LTTLLYSVVYGYRFWTAIGLP-SAC--FPFVVNCQVVLL 219 (295)
Q Consensus 184 ~Ns~VH~iMY~YY~lsa~g~~-~~w--k~~IT~lQivQF 219 (295)
=|+-|.+||| ++..+|.+ +|| ++-+|.+-+.|-
T Consensus 79 Gnydvnvima---alq~~gl~avw~dRrrd~~~l~L~~v 114 (204)
T KOG2934|consen 79 GNYDVNVIMA---ALQQCGLEAVWLDRRRDVTALALSVV 114 (204)
T ss_pred CcccHHHHHH---HHHhcCceeeeccccCCcchhhhHHH
Confidence 4888999995 68899999 687 788888777653
No 8
>PHA02650 hypothetical protein; Provisional
Probab=16.16 E-value=4.6e+02 Score=20.02 Aligned_cols=21 Identities=38% Similarity=0.630 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHcccC
Q 043004 250 VLNAVILLLFMNFYVKMYLRN 270 (295)
Q Consensus 250 ~~~~s~l~LF~~Fy~k~Y~~k 270 (295)
+..+.++++|.-+|-|.+.|.
T Consensus 56 i~~v~i~~l~~flYLK~~~r~ 76 (81)
T PHA02650 56 IFSLIIVALFSFFVFKGYTRN 76 (81)
T ss_pred HHHHHHHHHHHHHHHHHhccc
Confidence 356678888888999988764
No 9
>PF06210 DUF1003: Protein of unknown function (DUF1003); InterPro: IPR010406 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=14.49 E-value=6.4e+02 Score=20.13 Aligned_cols=56 Identities=20% Similarity=0.309 Sum_probs=35.9
Q ss_pred CCChHHHHHHHHHHHHHHhhhhhhhccccCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHH
Q 043004 27 GSTWSFLFAAISTYVVAATFLHVFLNLVLPRNRRIPLGPIPAIHSLAITLISVVTFVGILLS 88 (295)
Q Consensus 27 m~~~~~~~~i~~~Yl~~V~~l~~~~~~~M~~Rkp~~Lk~~l~~~N~~l~~~S~~~~~~~~~~ 88 (295)
++||.+.+..++..++-+.. .-. ...+++|+--+ .++-|+++++.+++.+--++.+
T Consensus 1 ~GS~~Fi~~~~~~~~~Wi~~-N~~----~~~~~~fDpyP-FilLnl~lS~~Aa~~ap~Ilms 56 (108)
T PF06210_consen 1 GGSWTFIIIFTVFLAVWILL-NIL----APPRPAFDPYP-FILLNLVLSLEAAYQAPLILMS 56 (108)
T ss_pred CCcHHHHHHHHHHHHHHHHH-Hhh----ccccCCCCCcc-HHHHHHHHHHHHHHHHHHHHHH
Confidence 36777777766666555532 222 23335666544 6688999999999877666554
No 10
>COG5593 Nucleic-acid-binding protein possibly involved in ribosomal biogenesis [Translation, ribosomal structure and biogenesis]
Probab=11.76 E-value=1.6e+02 Score=30.61 Aligned_cols=19 Identities=16% Similarity=0.310 Sum_probs=14.8
Q ss_pred HHHHHHHHHcccCCCCCCc
Q 043004 258 LFMNFYVKMYLRNKKIGDA 276 (295)
Q Consensus 258 LF~~Fy~k~Y~~k~~~~~~ 276 (295)
.|.+||-+.|.+++.++++
T Consensus 657 ffy~~f~~k~~~gk~~k~~ 675 (821)
T COG5593 657 FFYQYFTKKTADGKGKKSN 675 (821)
T ss_pred HHHHHhhhhhccccccccc
Confidence 5788999999887766654
Done!