Query 043004
Match_columns 295
No_of_seqs 145 out of 1180
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 20:48:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043004.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043004hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2koe_A Human cannabinoid recep 8.8 78 0.0027 18.7 0.1 17 180-196 8-24 (40)
2 2eki_A DRG 1, developmentally- 8.3 73 0.0025 23.9 -0.2 18 278-295 63-81 (93)
3 3arc_L Photosystem II reaction 7.2 4.6E+02 0.016 16.0 3.4 22 243-264 15-36 (37)
4 2ww9_C Protein transport prote 6.7 3.6E+02 0.012 19.9 2.9 34 17-50 48-81 (87)
5 2wb6_A AFV1-102; archaeal viru 5.7 2.1E+02 0.0072 21.5 1.2 13 137-149 41-53 (130)
6 2wwb_C SEC61BETA, protein tran 4.9 3.7E+02 0.013 20.1 2.2 26 25-50 65-90 (96)
7 4a9a_A Ribosome-interacting GT 4.2 2.1E+02 0.0072 26.4 0.4 13 283-295 358-370 (376)
8 1d4b_A CIDE B, human cell deat 3.5 84 0.0029 24.8 -2.6 21 140-160 95-121 (122)
9 1rkl_A Dolichyl-diphosphooligo 3.4 6.4E+02 0.022 15.4 2.0 17 211-227 2-18 (36)
10 2lat_A Dolichyl-diphosphooligo 3.4 7E+02 0.024 15.3 2.1 17 211-227 2-18 (37)
No 1
>2koe_A Human cannabinoid receptor 1 - helix 7/8 peptide; GPCR, HCB1, membrane protein, signaling protein; NMR {Homo sapiens}
Probab=8.76 E-value=78 Score=18.66 Aligned_cols=17 Identities=24% Similarity=0.550 Sum_probs=14.0
Q ss_pred HHHHHhhHHHHhhhhhH
Q 043004 180 VAILLTTLLYSVVYGYR 196 (295)
Q Consensus 180 ~~~~~Ns~VH~iMY~YY 196 (295)
+.+.+|+.+.|+.|+..
T Consensus 8 ~l~~~ns~lNPiIY~~~ 24 (40)
T 2koe_A 8 MLCLLNSTVNPIIYALR 24 (40)
T ss_dssp HHHHHHHHSSTTTTBTT
T ss_pred HHHHHHHHHHHHHHHHc
Confidence 46788999999999764
No 2
>2eki_A DRG 1, developmentally-regulated GTP-binding protein 1; protein NEDD3, neural precursor cell expressed developmentally DOWN-regulated protein 3; NMR {Homo sapiens}
Probab=8.27 E-value=73 Score=23.90 Aligned_cols=18 Identities=22% Similarity=0.370 Sum_probs=12.0
Q ss_pred hhhhccC-CCccccCCCCC
Q 043004 278 SAAEQSN-GGQMNLKDKDS 295 (295)
Q Consensus 278 ~k~~~~n-~~~~~~~~~~~ 295 (295)
+|.+.+. |.-+.|+|||+
T Consensus 63 aK~~~qrVgldh~L~d~DV 81 (93)
T 2eki_A 63 VKHNPQKVGKDHTLEDEDV 81 (93)
T ss_dssp SSSSSEEECSSCCCCSSEE
T ss_pred ccCCCEECCCCcEecCCCE
Confidence 4444333 88889999984
No 3
>3arc_L Photosystem II reaction center protein L; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_L* 3a0b_L* 3a0h_L* 2axt_L* 3bz1_L* 3bz2_L* 3kzi_L* 3prq_L* 3prr_L*
Probab=7.21 E-value=4.6e+02 Score=16.03 Aligned_cols=22 Identities=23% Similarity=0.445 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 043004 243 GAWTFNSVLNAVILLLFMNFYV 264 (295)
Q Consensus 243 ~~~~~~~~~~~s~l~LF~~Fy~ 264 (295)
....++.+......+||+++|.
T Consensus 15 TSLy~GLLlifvlavlFssyff 36 (37)
T 3arc_L 15 TSLYLGLLLILVLALLFSSYFF 36 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhhhhcc
Confidence 3566676677788899999875
No 4
>2ww9_C Protein transport protein SEB2; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_C
Probab=6.65 E-value=3.6e+02 Score=19.87 Aligned_cols=34 Identities=9% Similarity=0.171 Sum_probs=19.4
Q ss_pred cccccCcCCCCCChHHHHHHHHHHHHHHhhhhhh
Q 043004 17 NFRWNNAQSWGSTWSFLFAAISTYVVAATFLHVF 50 (295)
Q Consensus 17 ~F~~~~~~~~m~~~~~~~~i~~~Yl~~V~~l~~~ 50 (295)
.|-.+++.-+=-+|..++.++++|+.+|+.|..+
T Consensus 48 rfYtdds~GlKV~P~~VLv~sl~FIa~VilLHI~ 81 (87)
T 2ww9_C 48 KLYTDEANGFRVDSLVVLFLSVGFIFSVIALHLL 81 (87)
T ss_dssp ----------CCCHHHHHHHHHHHHHHHHHC---
T ss_pred HHhhcCCCceEEcCeeehhhHHHHHHHHHHHHHh
Confidence 3434444444489999999999999999988765
No 5
>2wb6_A AFV1-102; archaeal virus, viral protein; 1.95A {Acidianus filamentous virus 1}
Probab=5.71 E-value=2.1e+02 Score=21.49 Aligned_cols=13 Identities=15% Similarity=0.506 Sum_probs=12.0
Q ss_pred hhhhhhHHHHhcc
Q 043004 137 LHLLRTFFSILKH 149 (295)
Q Consensus 137 ~El~DTvf~VLrK 149 (295)
.||+|..|+|..|
T Consensus 41 sefldsmflviek 53 (130)
T 2wb6_A 41 SEFLDSMFLVIEK 53 (130)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHH
Confidence 5999999999988
No 6
>2wwb_C SEC61BETA, protein transport protein SEC61 subunit beta; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris}
Probab=4.92 E-value=3.7e+02 Score=20.11 Aligned_cols=26 Identities=8% Similarity=0.134 Sum_probs=21.8
Q ss_pred CCCCChHHHHHHHHHHHHHHhhhhhh
Q 043004 25 SWGSTWSFLFAAISTYVVAATFLHVF 50 (295)
Q Consensus 25 ~~m~~~~~~~~i~~~Yl~~V~~l~~~ 50 (295)
-+=-+|..++.+.+++.++|+.|..+
T Consensus 65 GlKV~P~~VLv~sl~Fi~~Vi~Lhi~ 90 (96)
T 2wwb_C 65 GLKVGPVPVLVMSLLFIASVFMLHIW 90 (96)
T ss_dssp CCCCSSCSHHHHHHHHHHHHHHHSCS
T ss_pred ceEECCEEehhhHHHHHHHHHHHHHh
Confidence 34478999999999999999988766
No 7
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=4.18 E-value=2.1e+02 Score=26.43 Aligned_cols=13 Identities=31% Similarity=0.232 Sum_probs=11.2
Q ss_pred cCCCccccCCCCC
Q 043004 283 SNGGQMNLKDKDS 295 (295)
Q Consensus 283 ~n~~~~~~~~~~~ 295 (295)
.-|+...|+|||+
T Consensus 358 ~eGkdyvv~DGDV 370 (376)
T 4a9a_A 358 YVGLSHILEDEDV 370 (376)
T ss_dssp EECTTCBCCTTCE
T ss_pred ccCCCcEEcCCCE
Confidence 3499999999995
No 8
>1d4b_A CIDE B, human cell death-inducing effector B; alpha/beta roll, apoptosis; NMR {Homo sapiens} SCOP: d.15.2.1
Probab=3.47 E-value=84 Score=24.78 Aligned_cols=21 Identities=10% Similarity=0.138 Sum_probs=14.8
Q ss_pred hhhHHHHhccC------ceeeEEEecc
Q 043004 140 LRTFFSILKHR------KLTFFQLFNQ 160 (295)
Q Consensus 140 ~DTvf~VLrK~------~lsFLHvYHH 160 (295)
=+|.|+||++. +...||--||
T Consensus 95 ~nT~lmvL~~gq~W~p~~~~~~~~~~~ 121 (122)
T 1d4b_A 95 DDTCLMVLQSGQSWSPTRSGVLHHHHH 121 (122)
T ss_dssp SCCCCCEECSSCCCCCCCCSCCTTCCC
T ss_pred CCCEEEEecCCCcccCCCcceeeeccC
Confidence 57889999982 4566775555
No 9
>1rkl_A Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 4 kDa subunit; membrane protein; NMR {Synthetic} SCOP: f.23.30.1
Probab=3.43 E-value=6.4e+02 Score=15.36 Aligned_cols=17 Identities=12% Similarity=0.022 Sum_probs=11.1
Q ss_pred chhhhhHHHHHHHHHHh
Q 043004 211 VVNCQVVLLVCNLICHF 227 (295)
Q Consensus 211 IT~lQivQFv~~~~~~~ 227 (295)
||--|+-+|...+....
T Consensus 2 IsD~qL~~lan~lG~~~ 18 (36)
T 1rkl_A 2 ISDEQLNSLAITFGIVM 18 (36)
T ss_dssp CSSCGGGHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHH
Confidence 56677777776555543
No 10
>2lat_A Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 4; membrane protein, oligosaccharyltransferase, integral membra protein; NMR {Homo sapiens}
Probab=3.39 E-value=7e+02 Score=15.28 Aligned_cols=17 Identities=12% Similarity=0.239 Sum_probs=10.6
Q ss_pred chhhhhHHHHHHHHHHh
Q 043004 211 VVNCQVVLLVCNLICHF 227 (295)
Q Consensus 211 IT~lQivQFv~~~~~~~ 227 (295)
||--|+-+|+..+....
T Consensus 2 IsD~qL~~lan~lG~~~ 18 (37)
T 2lat_A 2 ITDVQLAIFANMLGVSL 18 (37)
T ss_dssp CSCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHH
Confidence 56667777776555443
Done!