Query 043004
Match_columns 295
No_of_seqs 145 out of 1180
Neff 6.6
Searched_HMMs 13730
Date Mon Mar 25 20:48:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043004.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/043004hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1vf5c3 f.23.23.1 (C:250-286) 19.3 19 0.0014 20.9 1.1 15 139-153 17-31 (37)
2 d1q90a3 f.23.23.1 (A:248-292) 12.5 19 0.0014 21.8 -0.2 15 138-152 15-29 (45)
3 d1ni3a2 d.15.10.2 (A:307-388) 6.9 41 0.003 22.9 -0.3 13 283-295 66-78 (82)
4 d1jala2 d.15.10.2 (A:279-363) 5.7 79 0.0058 21.6 0.7 13 283-295 66-78 (85)
5 d2bnma2 b.82.1.10 (A:77-198) H 4.8 81 0.0059 22.2 0.2 6 289-294 89-94 (122)
6 d2e74e1 f.23.24.1 (E:1-32) Pet 3.5 3.7E+02 0.027 14.1 2.4 11 249-259 5-15 (32)
7 d1k8kf_ d.198.2.1 (F:) ARPC4 ( 3.3 1.3E+02 0.0092 23.0 0.2 22 143-164 99-125 (167)
8 d1xlya_ a.232.1.1 (A:) RNA-bin 3.1 2.3E+02 0.017 22.2 1.7 23 127-149 17-39 (232)
9 d1pd3a_ a.30.3.1 (A:) Nonstruc 2.9 2.2E+02 0.016 17.1 1.0 13 210-222 34-46 (54)
10 d1o5ua_ b.82.1.8 (A:) Hypothet 2.8 1.5E+02 0.011 19.7 0.1 14 282-295 51-64 (88)
No 1
>d1vf5c3 f.23.23.1 (C:250-286) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Mastigocladus laminosus [TaxId: 83541]}
Probab=19.28 E-value=19 Score=20.91 Aligned_cols=15 Identities=27% Similarity=0.565 Sum_probs=11.7
Q ss_pred hhhhHHHHhccCcee
Q 043004 139 LLRTFFSILKHRKLT 153 (295)
Q Consensus 139 l~DTvf~VLrK~~ls 153 (295)
.+--+++||+|||+-
T Consensus 17 ~laQi~lVlKKKQ~E 31 (37)
T d1vf5c3 17 MLAQLMLILKKKQVE 31 (37)
T ss_dssp HHHHHHHHHHTGGGC
T ss_pred HHHHHHHHHHHHHHH
Confidence 456778999998863
No 2
>d1q90a3 f.23.23.1 (A:248-292) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=12.55 E-value=19 Score=21.79 Aligned_cols=15 Identities=27% Similarity=0.510 Sum_probs=11.5
Q ss_pred hhhhhHHHHhccCce
Q 043004 138 HLLRTFFSILKHRKL 152 (295)
Q Consensus 138 El~DTvf~VLrK~~l 152 (295)
-.+--+|+||+|||.
T Consensus 15 v~laQi~LVLKKKQf 29 (45)
T d1q90a3 15 VLLTQVLLVLKKKQF 29 (45)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 346678999999775
No 3
>d1ni3a2 d.15.10.2 (A:307-388) YchF GTP-binding protein, C-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}
Probab=6.90 E-value=41 Score=22.95 Aligned_cols=13 Identities=15% Similarity=0.345 Sum_probs=10.9
Q ss_pred cCCCccccCCCCC
Q 043004 283 SNGGQMNLKDKDS 295 (295)
Q Consensus 283 ~n~~~~~~~~~~~ 295 (295)
..|+.-.++|||+
T Consensus 66 ~eGKdYiv~DGDV 78 (82)
T d1ni3a2 66 TKGKEYVMESGDI 78 (82)
T ss_dssp EEETTCBCCTTCE
T ss_pred hcCCcceEeCCcE
Confidence 4488999999995
No 4
>d1jala2 d.15.10.2 (A:279-363) YchF GTP-binding protein, C-terminal domain {Haemophilus influenzae [TaxId: 727]}
Probab=5.71 E-value=79 Score=21.56 Aligned_cols=13 Identities=23% Similarity=0.330 Sum_probs=11.0
Q ss_pred cCCCccccCCCCC
Q 043004 283 SNGGQMNLKDKDS 295 (295)
Q Consensus 283 ~n~~~~~~~~~~~ 295 (295)
..|+.-.++|||+
T Consensus 66 ~eGKdYiv~DGDi 78 (85)
T d1jala2 66 LEGKDYIVQDGDV 78 (85)
T ss_dssp EECTTCBCCTTCE
T ss_pred hhCCCCcEeCCCE
Confidence 4489999999995
No 5
>d2bnma2 b.82.1.10 (A:77-198) Hydroxypropylphosphonic acid epoxidase Fom4, C-terminal domain {Streptomyces wedmorensis [TaxId: 43759]}
Probab=4.78 E-value=81 Score=22.20 Aligned_cols=6 Identities=17% Similarity=-0.053 Sum_probs=2.2
Q ss_pred ccCCCC
Q 043004 289 NLKDKD 294 (295)
Q Consensus 289 ~~~~~~ 294 (295)
.|+.||
T Consensus 89 ~l~~GD 94 (122)
T d2bnma2 89 LLPTGA 94 (122)
T ss_dssp EECTTC
T ss_pred EEccCc
Confidence 333333
No 6
>d2e74e1 f.23.24.1 (E:1-32) PetL subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=3.50 E-value=3.7e+02 Score=14.12 Aligned_cols=11 Identities=36% Similarity=0.646 Sum_probs=6.2
Q ss_pred HHHHHHHHHHH
Q 043004 249 SVLNAVILLLF 259 (295)
Q Consensus 249 ~~~~~s~l~LF 259 (295)
.+.|+.|+.||
T Consensus 5 avfyivfialf 15 (32)
T d2e74e1 5 AVFYIVFIALF 15 (32)
T ss_dssp HHHHHHHHHHH
T ss_pred eeHHHHHHHHH
Confidence 34556666665
No 7
>d1k8kf_ d.198.2.1 (F:) ARPC4 (20 kDa subunit) {Cow (Bos taurus) [TaxId: 9913]}
Probab=3.29 E-value=1.3e+02 Score=22.97 Aligned_cols=22 Identities=18% Similarity=0.305 Sum_probs=16.9
Q ss_pred HHHHhccCc-----eeeEEEeccchhh
Q 043004 143 FFSILKHRK-----LTFFQLFNQSMLI 164 (295)
Q Consensus 143 vf~VLrK~~-----lsFLHvYHH~~~~ 164 (295)
-|.|||++| +|||=..+|.-.+
T Consensus 99 ~F~ILRrkPi~GYDISFLItn~h~e~m 125 (167)
T d1k8kf_ 99 NFFILRRKPVEGYDISFLITNFHTEQM 125 (167)
T ss_dssp TSTTBCSSCCTTCSEEEEEEHHHHHHS
T ss_pred hceeeeecCcCCCceeeeehhHHHHhh
Confidence 489999976 5888888886543
No 8
>d1xlya_ a.232.1.1 (A:) RNA-binding protein She2p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=3.10 E-value=2.3e+02 Score=22.24 Aligned_cols=23 Identities=35% Similarity=0.570 Sum_probs=20.3
Q ss_pred hHHHHHHHhhhhhhhhHHHHhcc
Q 043004 127 WSYVFYLSRFLHLLRTFFSILKH 149 (295)
Q Consensus 127 ~~~lf~lSK~~El~DTvf~VLrK 149 (295)
-.+--|+|.+++++.-.+-++||
T Consensus 17 ~~~s~YiS~yv~~LNk~I~~lRr 39 (232)
T d1xlya_ 17 ALLSRYLSSYIHVLNKFISHLRR 39 (232)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667999999999999999998
No 9
>d1pd3a_ a.30.3.1 (A:) Nonstructural protein ns2, Nep, M1-binding domain {Influenza A virus [TaxId: 11320]}
Probab=2.91 E-value=2.2e+02 Score=17.12 Aligned_cols=13 Identities=15% Similarity=0.123 Sum_probs=9.3
Q ss_pred cchhhhhHHHHHH
Q 043004 210 FVVNCQVVLLVCN 222 (295)
Q Consensus 210 ~IT~lQivQFv~~ 222 (295)
-||.+|-.|.++-
T Consensus 34 qitfmqalqllle 46 (54)
T d1pd3a_ 34 QITFMQALQLLLE 46 (54)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4778888887654
No 10
>d1o5ua_ b.82.1.8 (A:) Hypothetical protein TM1112 {Thermotoga maritima [TaxId: 2336]}
Probab=2.83 E-value=1.5e+02 Score=19.74 Aligned_cols=14 Identities=14% Similarity=0.311 Sum_probs=0.0
Q ss_pred ccCCCccccCCCCC
Q 043004 282 QSNGGQMNLKDKDS 295 (295)
Q Consensus 282 ~~n~~~~~~~~~~~ 295 (295)
+.||++..++.||+
T Consensus 51 ~~~G~~~~~~aGD~ 64 (88)
T d1o5ua_ 51 TEDGKKYVIEKGDL 64 (88)
T ss_dssp ETTCCEEEEETTCE
T ss_pred cCCCCEEEEeCCCE
Done!