BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043006
(205 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 66.6 bits (161), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 47/129 (36%), Positives = 62/129 (48%), Gaps = 24/129 (18%)
Query: 84 LGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLR-------------------- 123
L GTIPS LG+L L L L LN G + EL ++ L
Sbjct: 427 LSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNC 486
Query: 124 ----FISFTFNKLSGSIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNV 179
+IS + N+L+G IP WIG L L IL L NNS +G IP L + L LD N+
Sbjct: 487 TNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNL 546
Query: 180 IDGSIPSGI 188
+G+IP+ +
Sbjct: 547 FNGTIPAAM 555
Score = 57.8 bits (138), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 55/122 (45%)
Query: 67 CGLPHQRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFIS 126
C P + L + G G IP L N L+SL L+ N G + LG L +LR +
Sbjct: 386 CQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLK 445
Query: 127 FTFNKLSGSIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPS 186
N L G IP + + L L L N LTG IP+ L N + L + N + G IP
Sbjct: 446 LWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPK 505
Query: 187 GI 188
I
Sbjct: 506 WI 507
Score = 57.4 bits (137), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 48/85 (56%), Gaps = 3/85 (3%)
Query: 80 LDMG---LGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSI 136
LDM L G IP +G++ +L L+L N+ G + E+G LR L + + NKL G I
Sbjct: 634 LDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRI 693
Query: 137 PTWIGVLSKLRILSLCNNSLTGLIP 161
P + L+ L + L NN+L+G IP
Sbjct: 694 PQAMSALTMLTEIDLSNNNLSGPIP 718
Score = 57.0 bits (136), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 52/102 (50%)
Query: 85 GGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLS 144
GG N +M LD++ N G++ E+G + L ++ N +SGSIP +G L
Sbjct: 618 GGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLR 677
Query: 145 KLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPS 186
L IL L +N L G IP ++ L+ L +D N + G IP
Sbjct: 678 GLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 719
Score = 56.6 bits (135), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 60/130 (46%), Gaps = 27/130 (20%)
Query: 86 GTIPSHLGNL-LFLMSLDLTLNNFHGHLAHELGQ-------------------------- 118
G +P L NL L++LDL+ NNF G + L Q
Sbjct: 354 GELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSN 413
Query: 119 LRRLRFISFTFNKLSGSIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFN 178
L + +FN LSG+IP+ +G LSKLR L L N L G IP L + LE L FN
Sbjct: 414 CSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFN 473
Query: 179 VIDGSIPSGI 188
+ G IPSG+
Sbjct: 474 DLTGEIPSGL 483
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 45/81 (55%)
Query: 108 FHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNL 167
+ GH + + F+ ++N LSG IP IG + L IL+L +N ++G IP+ + +L
Sbjct: 617 YGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDL 676
Query: 168 SKLEMLDAMFNVIDGSIPSGI 188
L +LD N +DG IP +
Sbjct: 677 RGLNILDLSSNKLDGRIPQAM 697
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 70/180 (38%), Gaps = 53/180 (29%)
Query: 62 WIGISCGLPHQRVTALNHLDMGLGGTIPSHL-GNLLFLMSLDLTLNNFHGHLAHELG--- 117
++G LP + + L+ + G IP L G L LDL+ N+F+G + G
Sbjct: 256 FVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCS 315
Query: 118 ----------------------QLRRLRFISFTFNKLSGSIPTWIGVLSK---------- 145
++R L+ + +FN+ SG +P + LS
Sbjct: 316 LLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSN 375
Query: 146 -----------------LRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGI 188
L+ L L NN TG IP +L N S+L L FN + G+IPS +
Sbjct: 376 NFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSL 435
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 43/95 (45%), Gaps = 3/95 (3%)
Query: 92 LGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSL 151
LG+ L LD++ N G + + L+ ++ + N+ G IP L L+ LSL
Sbjct: 216 LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSL 273
Query: 152 CNNSLTGLIPNSLFN-LSKLEMLDAMFNVIDGSIP 185
N TG IP+ L L LD N G++P
Sbjct: 274 AENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVP 308
Score = 36.2 bits (82), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 61/153 (39%), Gaps = 32/153 (20%)
Query: 66 SCGLPH-QRVTALNHLDMG---LGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRR 121
S G+P +AL HLD+ L G + L L+++ N F G + L+
Sbjct: 210 STGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKS 267
Query: 122 LRFISFTFNKLSGSIPTWI-GVLSKLRILSLCNNSLTGLIP------------------- 161
L+++S NK +G IP ++ G L L L N G +P
Sbjct: 268 LQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNF 327
Query: 162 ------NSLFNLSKLEMLDAMFNVIDGSIPSGI 188
++L + L++LD FN G +P +
Sbjct: 328 SGELPMDTLLKMRGLKVLDLSFNEFSGELPESL 360
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 66.6 bits (161), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 47/129 (36%), Positives = 62/129 (48%), Gaps = 24/129 (18%)
Query: 84 LGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLR-------------------- 123
L GTIPS LG+L L L L LN G + EL ++ L
Sbjct: 430 LSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNC 489
Query: 124 ----FISFTFNKLSGSIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNV 179
+IS + N+L+G IP WIG L L IL L NNS +G IP L + L LD N+
Sbjct: 490 TNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNL 549
Query: 180 IDGSIPSGI 188
+G+IP+ +
Sbjct: 550 FNGTIPAAM 558
Score = 57.8 bits (138), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 55/122 (45%)
Query: 67 CGLPHQRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFIS 126
C P + L + G G IP L N L+SL L+ N G + LG L +LR +
Sbjct: 389 CQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLK 448
Query: 127 FTFNKLSGSIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPS 186
N L G IP + + L L L N LTG IP+ L N + L + N + G IP
Sbjct: 449 LWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPK 508
Query: 187 GI 188
I
Sbjct: 509 WI 510
Score = 57.4 bits (137), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 48/85 (56%), Gaps = 3/85 (3%)
Query: 80 LDMG---LGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSI 136
LDM L G IP +G++ +L L+L N+ G + E+G LR L + + NKL G I
Sbjct: 637 LDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRI 696
Query: 137 PTWIGVLSKLRILSLCNNSLTGLIP 161
P + L+ L + L NN+L+G IP
Sbjct: 697 PQAMSALTMLTEIDLSNNNLSGPIP 721
Score = 57.0 bits (136), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 52/102 (50%)
Query: 85 GGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLS 144
GG N +M LD++ N G++ E+G + L ++ N +SGSIP +G L
Sbjct: 621 GGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLR 680
Query: 145 KLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPS 186
L IL L +N L G IP ++ L+ L +D N + G IP
Sbjct: 681 GLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 722
Score = 57.0 bits (136), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 60/130 (46%), Gaps = 27/130 (20%)
Query: 86 GTIPSHLGNL-LFLMSLDLTLNNFHGHLAHELGQ-------------------------- 118
G +P L NL L++LDL+ NNF G + L Q
Sbjct: 357 GELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSN 416
Query: 119 LRRLRFISFTFNKLSGSIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFN 178
L + +FN LSG+IP+ +G LSKLR L L N L G IP L + LE L FN
Sbjct: 417 CSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFN 476
Query: 179 VIDGSIPSGI 188
+ G IPSG+
Sbjct: 477 DLTGEIPSGL 486
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 45/81 (55%)
Query: 108 FHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNL 167
+ GH + + F+ ++N LSG IP IG + L IL+L +N ++G IP+ + +L
Sbjct: 620 YGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDL 679
Query: 168 SKLEMLDAMFNVIDGSIPSGI 188
L +LD N +DG IP +
Sbjct: 680 RGLNILDLSSNKLDGRIPQAM 700
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 70/180 (38%), Gaps = 53/180 (29%)
Query: 62 WIGISCGLPHQRVTALNHLDMGLGGTIPSHL-GNLLFLMSLDLTLNNFHGHLAHELG--- 117
++G LP + + L+ + G IP L G L LDL+ N+F+G + G
Sbjct: 259 FVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCS 318
Query: 118 ----------------------QLRRLRFISFTFNKLSGSIPTWIGVLSK---------- 145
++R L+ + +FN+ SG +P + LS
Sbjct: 319 LLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSN 378
Query: 146 -----------------LRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGI 188
L+ L L NN TG IP +L N S+L L FN + G+IPS +
Sbjct: 379 NFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSL 438
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 43/95 (45%), Gaps = 3/95 (3%)
Query: 92 LGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSL 151
LG+ L LD++ N G + + L+ ++ + N+ G IP L L+ LSL
Sbjct: 219 LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSL 276
Query: 152 CNNSLTGLIPNSLFN-LSKLEMLDAMFNVIDGSIP 185
N TG IP+ L L LD N G++P
Sbjct: 277 AENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVP 311
Score = 36.2 bits (82), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 61/153 (39%), Gaps = 32/153 (20%)
Query: 66 SCGLPH-QRVTALNHLDMG---LGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRR 121
S G+P +AL HLD+ L G + L L+++ N F G + L+
Sbjct: 213 STGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKS 270
Query: 122 LRFISFTFNKLSGSIPTWI-GVLSKLRILSLCNNSLTGLIP------------------- 161
L+++S NK +G IP ++ G L L L N G +P
Sbjct: 271 LQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNF 330
Query: 162 ------NSLFNLSKLEMLDAMFNVIDGSIPSGI 188
++L + L++LD FN G +P +
Sbjct: 331 SGELPMDTLLKMRGLKVLDLSFNEFSGELPESL 363
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 54/101 (53%), Gaps = 2/101 (1%)
Query: 84 LGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVL 143
+ G IP L + L++LD + N G L + L L I+F N++SG+IP G
Sbjct: 113 VSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSF 172
Query: 144 SKL-RILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGS 183
SKL +++ N LTG IP + NL+ L +D N+++G
Sbjct: 173 SKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGD 212
Score = 50.4 bits (119), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 79/188 (42%), Gaps = 36/188 (19%)
Query: 31 DQSALLAFKAHVVDYRSALANNWAMSSPICN--WIGISCGLPHQRVTALNHLDMG----- 83
D+ ALL K + + ++W ++ CN W+G+ C Q +N+LD+
Sbjct: 7 DKQALLQIKKDLGN--PTTLSSWLPTTDCCNRTWLGVLCDTDTQ-TYRVNNLDLSGLNLP 63
Query: 84 -------------------------LGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQ 118
L G IP + L L L +T N G + L Q
Sbjct: 64 KPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQ 123
Query: 119 LRRLRFISFTFNKLSGSIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKL-EMLDAMF 177
++ L + F++N LSG++P I L L ++ N ++G IP+S + SKL +
Sbjct: 124 IKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISR 183
Query: 178 NVIDGSIP 185
N + G IP
Sbjct: 184 NRLTGKIP 191
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 46/104 (44%), Gaps = 2/104 (1%)
Query: 84 LGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVL 143
L G IP NL L +DL+ N G + G + + I N L+ + +G+
Sbjct: 186 LTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL-GKVGLS 243
Query: 144 SKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSG 187
L L L NN + G +P L L L L+ FN + G IP G
Sbjct: 244 KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG 287
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 31.2 bits (69), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 44/99 (44%), Gaps = 3/99 (3%)
Query: 68 GLPHQRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISF 127
G+P VT L +LD +P L N L +DL+ N + +L +
Sbjct: 28 GIPRD-VTEL-YLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLIL 85
Query: 128 TFNKLSGSIPTWIGVLSKLRILSLCNNSLTGLIPNSLFN 166
++N+L P L LR+LSL N ++ ++P FN
Sbjct: 86 SYNRLRCIPPRTFDGLKSLRLLSLHGNDIS-VVPEGAFN 123
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 30.8 bits (68), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 46/109 (42%), Gaps = 11/109 (10%)
Query: 66 SCGLPHQRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFI 125
S L ++T + H D+ NL L+ +N G + LG L L
Sbjct: 56 SLDLSFNKITYIGHGDL-------RACANLQVLILKSSRINTIEGDAFYSLGSLEHL--- 105
Query: 126 SFTFNKLSGSIPTWIGVLSKLRILSLCNNSLTGLIPNSLF-NLSKLEML 173
+ N LS +W G LS L+ L+L N L SLF NL+ L+ L
Sbjct: 106 DLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTL 154
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 30.4 bits (67), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 46/109 (42%), Gaps = 11/109 (10%)
Query: 66 SCGLPHQRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFI 125
S L ++T + H D+ NL L+ +N G + LG L L
Sbjct: 30 SLDLSFNKITYIGHGDL-------RACANLQVLILKSSRINTIEGDAFYSLGSLEHL--- 79
Query: 126 SFTFNKLSGSIPTWIGVLSKLRILSLCNNSLTGLIPNSLF-NLSKLEML 173
+ N LS +W G LS L+ L+L N L SLF NL+ L+ L
Sbjct: 80 DLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTL 128
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 30.4 bits (67), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 25/54 (46%)
Query: 98 LMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSL 151
L LDL+ NN H L LR++S +N + P LS LR LSL
Sbjct: 250 LTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQRLSPRSFYGLSNLRYLSL 303
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Query: 90 SHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRIL 149
S L + L +L LT N + L L + ++N LS +W LS L L
Sbjct: 70 SDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFL 129
Query: 150 SLCNNSLTGLIPNSLFN-LSKLEML 173
+L N L SLF+ L+KL++L
Sbjct: 130 NLLGNPYKTLGETSLFSHLTKLQIL 154
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 28.5 bits (62), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Query: 90 SHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRIL 149
S L + L +L LT N + L L + ++N LS +W LS L L
Sbjct: 44 SDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFL 103
Query: 150 SLCNNSLTGLIPNSLFN-LSKLEML 173
+L N L SLF+ L+KL++L
Sbjct: 104 NLLGNPYKTLGETSLFSHLTKLQIL 128
>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
Length = 279
Score = 28.5 bits (62), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 2/80 (2%)
Query: 107 NFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSLCNNSLTGLIPNSLFN 166
N +H L L I F NKL G + KL+ L+L +N L +P+ +F+
Sbjct: 157 NIEEMPSHLFDDLENLESIEFGSNKLRQMPRGIFGKMPKLKQLNLASNQLKS-VPDGIFD 215
Query: 167 -LSKLEMLDAMFNVIDGSIP 185
L+ L+ + N D S P
Sbjct: 216 RLTSLQKIWLHTNPWDCSCP 235
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 27.3 bits (59), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 40/94 (42%), Gaps = 10/94 (10%)
Query: 84 LGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVL 143
LG T+P+ L LD++ N L L L+ + N+L P +
Sbjct: 95 LGQTLPA-------LTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPT 147
Query: 144 SKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMF 177
KL LSL NN LT L P L N LE LD +
Sbjct: 148 PKLEKLSLANNQLTEL-PAGLLN--GLENLDTLL 178
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 27.3 bits (59), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 41/94 (43%), Gaps = 10/94 (10%)
Query: 84 LGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVL 143
LG T+P+ L LD++ N L L L+ + N+L P +
Sbjct: 95 LGQTLPA-------LTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPT 147
Query: 144 SKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMF 177
KL LSL NN+LT L P L N LE LD +
Sbjct: 148 PKLEKLSLANNNLTEL-PAGLLN--GLENLDTLL 178
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 27.3 bits (59), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 41/94 (43%), Gaps = 10/94 (10%)
Query: 84 LGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVL 143
LG T+P+ L LD++ N L L L+ + N+L P +
Sbjct: 95 LGQTLPA-------LTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPT 147
Query: 144 SKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMF 177
KL LSL NN+LT L P L N LE LD +
Sbjct: 148 PKLEKLSLANNNLTEL-PAGLLN--GLENLDTLL 178
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 27.3 bits (59), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 41/94 (43%), Gaps = 10/94 (10%)
Query: 84 LGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVL 143
LG T+P+ L LD++ N L L L+ + N+L P +
Sbjct: 96 LGQTLPA-------LTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPT 148
Query: 144 SKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMF 177
KL LSL NN+LT L P L N LE LD +
Sbjct: 149 PKLEKLSLANNNLTEL-PAGLLN--GLENLDTLL 179
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 27.3 bits (59), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 40/94 (42%), Gaps = 10/94 (10%)
Query: 84 LGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVL 143
LG T+P+ L LD++ N L L L+ + N+L P +
Sbjct: 95 LGQTLPA-------LTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPT 147
Query: 144 SKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMF 177
KL LSL NN LT L P L N LE LD +
Sbjct: 148 PKLEKLSLANNQLTEL-PAGLLN--GLENLDTLL 178
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 27.3 bits (59), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 41/94 (43%), Gaps = 10/94 (10%)
Query: 84 LGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVL 143
LG T+P+ L LD++ N L L L+ + N+L P +
Sbjct: 95 LGQTLPA-------LTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPT 147
Query: 144 SKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMF 177
KL LSL NN+LT L P L N LE LD +
Sbjct: 148 PKLEKLSLANNNLTEL-PAGLLN--GLENLDTLL 178
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 27.3 bits (59), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 41/94 (43%), Gaps = 10/94 (10%)
Query: 84 LGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVL 143
LG T+P+ L LD++ N L L L+ + N+L P +
Sbjct: 95 LGQTLPA-------LTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPT 147
Query: 144 SKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMF 177
KL LSL NN+LT L P L N LE LD +
Sbjct: 148 PKLEKLSLANNNLTEL-PAGLLN--GLENLDTLL 178
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 27.3 bits (59), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 40/94 (42%), Gaps = 10/94 (10%)
Query: 84 LGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVL 143
LG T+P+ L LD++ N L L L+ + N+L P +
Sbjct: 95 LGQTLPA-------LTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPT 147
Query: 144 SKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMF 177
KL LSL NN LT L P L N LE LD +
Sbjct: 148 PKLEKLSLANNQLTEL-PAGLLN--GLENLDTLL 178
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 27.3 bits (59), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 40/94 (42%), Gaps = 10/94 (10%)
Query: 84 LGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVL 143
LG T+P+ L LD++ N L L L+ + N+L P +
Sbjct: 95 LGQTLPA-------LTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPT 147
Query: 144 SKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMF 177
KL LSL NN LT L P L N LE LD +
Sbjct: 148 PKLEKLSLANNQLTEL-PAGLLN--GLENLDTLL 178
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 27.3 bits (59), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 40/94 (42%), Gaps = 10/94 (10%)
Query: 84 LGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVL 143
LG T+P+ L LD++ N L L L+ + N+L P +
Sbjct: 95 LGQTLPA-------LTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPT 147
Query: 144 SKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMF 177
KL LSL NN LT L P L N LE LD +
Sbjct: 148 PKLEKLSLANNDLTEL-PAGLLN--GLENLDTLL 178
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 27.3 bits (59), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 43/83 (51%), Gaps = 6/83 (7%)
Query: 94 NLLFLMSLDLTLN---NFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILS 150
+L++L L+L+ N G + HEL +L+ ++ + +L+ P L+ LR+L+
Sbjct: 246 HLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVG---GQLAVVEPYAFRGLNYLRVLN 302
Query: 151 LCNNSLTGLIPNSLFNLSKLEML 173
+ N LT L + ++ LE L
Sbjct: 303 VSGNQLTTLEESVFHSVGNLETL 325
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.326 0.139 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,201,599
Number of Sequences: 62578
Number of extensions: 193882
Number of successful extensions: 557
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 474
Number of HSP's gapped (non-prelim): 53
length of query: 205
length of database: 14,973,337
effective HSP length: 94
effective length of query: 111
effective length of database: 9,091,005
effective search space: 1009101555
effective search space used: 1009101555
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 49 (23.5 bits)