Query 043006
Match_columns 205
No_of_seqs 225 out of 2284
Neff 9.8
Searched_HMMs 46136
Date Fri Mar 29 11:51:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043006.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043006hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 99.9 4.5E-26 9.7E-31 206.4 16.7 175 28-204 27-224 (968)
2 PLN03150 hypothetical protein; 99.8 8.3E-19 1.8E-23 151.8 13.2 156 27-185 369-532 (623)
3 PLN00113 leucine-rich repeat r 99.8 1.3E-18 2.9E-23 158.0 10.3 132 73-204 141-272 (968)
4 KOG0617 Ras suppressor protein 99.7 1.6E-18 3.5E-23 123.8 -2.5 130 71-204 32-162 (264)
5 PLN03150 hypothetical protein; 99.6 9.5E-15 2.1E-19 126.7 9.4 107 97-203 419-526 (623)
6 KOG0617 Ras suppressor protein 99.6 5.1E-17 1.1E-21 116.1 -4.7 130 72-205 56-186 (264)
7 KOG0472 Leucine-rich repeat pr 99.5 1.1E-14 2.3E-19 116.3 0.6 130 73-205 389-541 (565)
8 KOG4194 Membrane glycoprotein 99.5 5.6E-15 1.2E-19 122.7 -1.3 132 72-204 269-428 (873)
9 KOG0444 Cytoskeletal regulator 99.4 1.7E-14 3.7E-19 121.1 -0.0 130 72-205 103-258 (1255)
10 KOG4194 Membrane glycoprotein 99.4 6.6E-14 1.4E-18 116.4 2.6 132 73-204 198-329 (873)
11 KOG0472 Leucine-rich repeat pr 99.4 9.8E-15 2.1E-19 116.5 -3.6 126 72-204 183-309 (565)
12 KOG0444 Cytoskeletal regulator 99.3 1.5E-13 3.3E-18 115.5 -1.5 128 73-204 56-185 (1255)
13 PF14580 LRR_9: Leucine-rich r 99.3 3.7E-12 8.1E-17 93.1 5.2 122 72-199 19-147 (175)
14 PRK15370 E3 ubiquitin-protein 99.3 1.4E-10 2.9E-15 102.2 15.0 118 73-205 179-296 (754)
15 KOG0532 Leucine-rich repeat (L 99.3 3.5E-13 7.5E-18 111.7 -1.1 127 72-205 121-247 (722)
16 PRK15387 E3 ubiquitin-protein 99.3 2.1E-11 4.5E-16 107.1 8.9 56 145-205 403-458 (788)
17 KOG0618 Serine/threonine phosp 99.3 2.8E-13 6E-18 117.6 -3.1 127 72-203 359-487 (1081)
18 PF14580 LRR_9: Leucine-rich r 99.2 7.1E-12 1.5E-16 91.6 4.6 108 92-205 15-126 (175)
19 cd00116 LRR_RI Leucine-rich re 99.2 2.3E-12 5.1E-17 103.1 2.3 132 72-203 81-232 (319)
20 KOG1259 Nischarin, modulator o 99.2 1.4E-12 3.1E-17 101.1 -0.5 128 71-205 283-412 (490)
21 cd00116 LRR_RI Leucine-rich re 99.2 5.9E-12 1.3E-16 100.8 2.3 132 73-204 138-290 (319)
22 PRK15370 E3 ubiquitin-protein 99.2 6.3E-11 1.4E-15 104.3 7.3 119 73-204 242-379 (754)
23 PLN03210 Resistant to P. syrin 99.1 6.3E-10 1.4E-14 103.1 10.6 126 72-202 778-903 (1153)
24 PLN03210 Resistant to P. syrin 99.1 1E-09 2.3E-14 101.6 11.8 124 74-202 591-714 (1153)
25 PF13855 LRR_8: Leucine rich r 99.1 6.5E-11 1.4E-15 71.7 2.5 60 145-204 2-61 (61)
26 KOG4237 Extracellular matrix p 99.1 1E-11 2.2E-16 99.2 -1.7 130 72-203 67-199 (498)
27 PRK15387 E3 ubiquitin-protein 99.0 9.9E-10 2.1E-14 96.7 9.1 116 73-205 223-355 (788)
28 PF13855 LRR_8: Leucine rich r 99.0 4.1E-10 8.9E-15 68.2 3.8 59 97-155 2-60 (61)
29 KOG0618 Serine/threonine phosp 99.0 8.7E-11 1.9E-15 102.4 -0.4 127 72-202 383-510 (1081)
30 COG4886 Leucine-rich repeat (L 99.0 2.7E-10 5.8E-15 94.1 2.3 102 73-178 117-219 (394)
31 PF08263 LRRNT_2: Leucine rich 98.9 1.4E-09 3.1E-14 60.9 4.1 40 29-68 2-43 (43)
32 KOG0532 Leucine-rich repeat (L 98.9 4.2E-11 9.1E-16 99.6 -4.2 122 77-205 103-224 (722)
33 COG4886 Leucine-rich repeat (L 98.9 8.9E-10 1.9E-14 91.0 3.2 105 94-202 114-219 (394)
34 KOG1259 Nischarin, modulator o 98.8 5.2E-10 1.1E-14 87.0 -0.4 107 92-204 280-386 (490)
35 KOG4237 Extracellular matrix p 98.8 4.9E-10 1.1E-14 89.7 -1.5 125 77-204 51-176 (498)
36 KOG1859 Leucine-rich repeat pr 98.5 6E-10 1.3E-14 95.4 -8.3 125 73-204 165-291 (1096)
37 KOG4658 Apoptotic ATPase [Sign 98.5 5.3E-08 1.1E-12 87.4 2.7 107 72-179 545-653 (889)
38 PF12799 LRR_4: Leucine Rich r 98.5 1.5E-07 3.2E-12 52.8 3.0 37 144-181 1-37 (44)
39 KOG3207 Beta-tubulin folding c 98.4 5.4E-08 1.2E-12 79.1 0.9 62 142-204 244-313 (505)
40 KOG4579 Leucine-rich repeat (L 98.4 1E-08 2.2E-13 71.1 -2.8 113 72-188 27-142 (177)
41 KOG0531 Protein phosphatase 1, 98.4 5.1E-08 1.1E-12 81.2 -0.1 124 74-204 74-198 (414)
42 KOG4658 Apoptotic ATPase [Sign 98.4 2.9E-07 6.4E-12 82.8 4.5 126 73-201 524-651 (889)
43 KOG4579 Leucine-rich repeat (L 98.4 1.6E-08 3.6E-13 70.1 -2.8 112 71-186 52-164 (177)
44 KOG3207 Beta-tubulin folding c 98.3 9.3E-08 2E-12 77.7 0.1 131 72-204 197-338 (505)
45 PF12799 LRR_4: Leucine Rich r 98.3 5.8E-07 1.3E-11 50.4 3.2 37 120-157 1-37 (44)
46 KOG1859 Leucine-rich repeat pr 98.2 2.8E-08 6.1E-13 85.4 -5.3 102 97-204 165-266 (1096)
47 KOG0531 Protein phosphatase 1, 98.2 3.4E-07 7.3E-12 76.3 0.8 107 93-205 69-175 (414)
48 KOG1909 Ran GTPase-activating 98.2 5.8E-07 1.3E-11 71.2 1.5 133 72-204 92-282 (382)
49 KOG1644 U2-associated snRNP A' 98.0 1.2E-05 2.5E-10 59.5 5.0 102 73-177 43-149 (233)
50 KOG1644 U2-associated snRNP A' 97.9 1.8E-05 4E-10 58.5 5.3 102 97-201 43-149 (233)
51 KOG1909 Ran GTPase-activating 97.9 4E-06 8.7E-11 66.6 0.6 133 72-204 157-310 (382)
52 PRK15386 type III secretion pr 97.8 0.00013 2.9E-09 60.1 7.8 13 169-181 157-169 (426)
53 KOG3665 ZYG-1-like serine/thre 97.6 4.9E-05 1.1E-09 67.1 3.9 107 95-204 147-262 (699)
54 KOG2739 Leucine-rich acidic nu 97.6 4.7E-05 1E-09 58.3 2.8 64 116-181 61-129 (260)
55 KOG2120 SCF ubiquitin ligase, 97.4 1.3E-05 2.8E-10 62.8 -2.3 59 142-202 311-373 (419)
56 KOG2982 Uncharacterized conser 97.4 5.6E-05 1.2E-09 59.3 0.9 37 167-204 223-261 (418)
57 PRK15386 type III secretion pr 97.3 0.00042 9.1E-09 57.3 5.5 95 72-178 72-187 (426)
58 KOG3665 ZYG-1-like serine/thre 97.3 6.7E-05 1.5E-09 66.2 1.0 106 96-203 122-231 (699)
59 KOG2739 Leucine-rich acidic nu 97.3 0.00015 3.3E-09 55.6 2.6 82 119-204 42-128 (260)
60 COG5238 RNA1 Ran GTPase-activa 97.3 0.00021 4.6E-09 55.5 3.4 38 72-109 92-133 (388)
61 KOG2982 Uncharacterized conser 97.2 5.8E-05 1.2E-09 59.3 -0.9 86 95-180 70-158 (418)
62 COG5238 RNA1 Ran GTPase-activa 96.9 0.0014 2.9E-08 51.2 3.8 112 90-205 86-227 (388)
63 KOG2123 Uncharacterized conser 96.8 4.1E-05 8.8E-10 59.5 -4.4 97 73-174 20-123 (388)
64 PF13306 LRR_5: Leucine rich r 96.8 0.0063 1.4E-07 41.8 6.8 116 72-194 12-128 (129)
65 KOG2120 SCF ubiquitin ligase, 96.8 3.1E-05 6.6E-10 60.8 -5.7 56 74-129 187-243 (419)
66 PF00560 LRR_1: Leucine Rich R 96.7 0.00055 1.2E-08 32.1 0.3 19 170-189 2-20 (22)
67 PF13306 LRR_5: Leucine rich r 96.4 0.014 3E-07 40.1 6.4 106 91-202 7-113 (129)
68 PF00560 LRR_1: Leucine Rich R 96.4 0.0021 4.5E-08 30.1 1.5 18 98-116 2-19 (22)
69 KOG0473 Leucine-rich repeat pr 96.2 9E-05 2E-09 56.3 -5.9 84 71-157 41-124 (326)
70 KOG2123 Uncharacterized conser 95.8 0.00036 7.9E-09 54.4 -4.3 99 95-198 18-123 (388)
71 PF13504 LRR_7: Leucine rich r 95.3 0.0094 2E-07 25.9 1.1 13 169-181 2-14 (17)
72 KOG0473 Leucine-rich repeat pr 94.9 0.00034 7.4E-09 53.2 -7.0 89 90-181 36-124 (326)
73 smart00369 LRR_TYP Leucine-ric 92.8 0.12 2.6E-06 24.9 2.2 18 168-186 2-19 (26)
74 smart00370 LRR Leucine-rich re 92.8 0.12 2.6E-06 24.9 2.2 18 168-186 2-19 (26)
75 KOG3864 Uncharacterized conser 90.6 0.041 8.9E-07 41.1 -1.4 34 73-106 102-135 (221)
76 PF13516 LRR_6: Leucine Rich r 90.1 0.041 8.8E-07 26.1 -1.2 13 169-181 3-15 (24)
77 smart00365 LRR_SD22 Leucine-ri 88.4 0.46 1E-05 23.1 1.8 13 192-204 2-14 (26)
78 smart00364 LRR_BAC Leucine-ric 86.9 0.43 9.3E-06 23.2 1.2 18 168-186 2-19 (26)
79 KOG1947 Leucine rich repeat pr 86.9 0.29 6.2E-06 41.2 1.0 37 143-179 242-280 (482)
80 KOG4308 LRR-containing protein 86.1 0.0056 1.2E-07 52.0 -9.6 132 73-204 145-302 (478)
81 smart00368 LRR_RI Leucine rich 85.5 0.77 1.7E-05 22.6 1.8 12 193-204 3-14 (28)
82 KOG3864 Uncharacterized conser 83.5 0.42 9.2E-06 35.8 0.4 81 97-177 102-185 (221)
83 KOG1947 Leucine rich repeat pr 80.5 0.41 8.8E-06 40.3 -0.7 89 92-180 210-307 (482)
84 KOG3763 mRNA export factor TAP 64.4 3.5 7.7E-05 35.6 1.2 61 95-158 217-284 (585)
85 PF07172 GRP: Glycine rich pro 47.6 15 0.00033 24.0 1.8 13 1-13 1-13 (95)
86 PF02950 Conotoxin: Conotoxin; 46.2 7.4 0.00016 23.9 0.2 15 1-15 1-15 (75)
87 smart00367 LRR_CC Leucine-rich 45.8 16 0.00034 17.2 1.3 12 168-179 2-13 (26)
88 KOG4308 LRR-containing protein 44.4 1 2.2E-05 38.6 -5.1 109 97-205 88-217 (478)
89 KOG3763 mRNA export factor TAP 43.3 14 0.00031 32.1 1.5 65 118-184 216-286 (585)
90 TIGR00864 PCC polycystin catio 36.4 24 0.00052 36.8 2.0 32 102-133 1-32 (2740)
91 PF13956 Ibs_toxin: Toxin Ibs, 32.8 25 0.00054 15.3 0.7 11 1-11 2-12 (19)
92 KOG4242 Predicted myosin-I-bin 30.6 35 0.00076 29.3 1.8 16 122-137 216-231 (553)
93 PF13260 DUF4051: Protein of u 28.1 1E+02 0.0022 17.3 2.8 15 29-43 30-44 (54)
94 KOG4341 F-box protein containi 27.1 36 0.00078 28.8 1.4 13 142-154 370-382 (483)
95 TIGR00864 PCC polycystin catio 23.8 53 0.0012 34.5 2.0 33 78-110 1-33 (2740)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.94 E-value=4.5e-26 Score=206.44 Aligned_cols=175 Identities=33% Similarity=0.583 Sum_probs=124.3
Q ss_pred ChhhHHHHHHHHhccccCCCCcCCCCCCCCCCCcccceeeCCCCCcEEEEEcCCCCccccCCccccCCCCCCEEEccCCc
Q 043006 28 ITTDQSALLAFKAHVVDYRSALANNWAMSSPICNWIGISCGLPHQRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNN 107 (205)
Q Consensus 28 ~~~~~~~l~~~~~~~~~~~~~~~~~w~~~~~~c~w~gv~c~~~~~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~ 107 (205)
.+.|+.+|++||+.+. ++.....+|+...++|.|.|+.|+. .++|+.|+++++.+.|.+|..+..+++|++|++++|.
T Consensus 27 ~~~~~~~l~~~~~~~~-~~~~~~~~w~~~~~~c~w~gv~c~~-~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~ 104 (968)
T PLN00113 27 HAEELELLLSFKSSIN-DPLKYLSNWNSSADVCLWQGITCNN-SSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQ 104 (968)
T ss_pred CHHHHHHHHHHHHhCC-CCcccCCCCCCCCCCCcCcceecCC-CCcEEEEEecCCCccccCChHHhCCCCCCEEECCCCc
Confidence 3579999999999996 5666778998888999999999984 4689999999999999888889999999999999999
Q ss_pred cccccccccC-CCCCCcEEEcccCcCCCCC----------------------CccccCCCCCCEEEcccccCCCCCchhc
Q 043006 108 FHGHLAHELG-QLRRLRFISFTFNKLSGSI----------------------PTWIGVLSKLRILSLCNNSLTGLIPNSL 164 (205)
Q Consensus 108 ~~~~~p~~~~-~l~~L~~L~l~~n~l~~~~----------------------p~~~~~l~~L~~l~l~~n~l~~~~p~~~ 164 (205)
+++.+|..+. .+++|++|++++|.+++.+ |..++.+++|++|++++|.+.+.+|..+
T Consensus 105 ~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~ 184 (968)
T PLN00113 105 LSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSL 184 (968)
T ss_pred cCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhh
Confidence 8887876644 6666666666666665444 4444455555555555555555555555
Q ss_pred cCCCCCCeeecccCcCcccCChhhcCCCCCCEEEccCCCC
Q 043006 165 FNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNL 204 (205)
Q Consensus 165 ~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l 204 (205)
..+++|++|++++|.+.+.+|..++++++|++|++++|.+
T Consensus 185 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l 224 (968)
T PLN00113 185 TNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNL 224 (968)
T ss_pred hhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCcc
Confidence 5555555555555555555555555555555555555543
No 2
>PLN03150 hypothetical protein; Provisional
Probab=99.80 E-value=8.3e-19 Score=151.83 Aligned_cols=156 Identities=28% Similarity=0.440 Sum_probs=131.3
Q ss_pred CChhhHHHHHHHHhccccCCCCcCCCCCCCCC---CCcccceeeCCCC----CcEEEEEcCCCCccccCCccccCCCCCC
Q 043006 27 NITTDQSALLAFKAHVVDYRSALANNWAMSSP---ICNWIGISCGLPH----QRVTALNHLDMGLGGTIPSHLGNLLFLM 99 (205)
Q Consensus 27 ~~~~~~~~l~~~~~~~~~~~~~~~~~w~~~~~---~c~w~gv~c~~~~----~~l~~L~l~~~~l~~~~p~~l~~l~~L~ 99 (205)
..++|..+|..+|..+.. +. ..+|.+..+ .|.|.||.|.... ..++.|+++++.+.|.+|..+..+++|+
T Consensus 369 t~~~~~~aL~~~k~~~~~-~~--~~~W~g~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ip~~i~~L~~L~ 445 (623)
T PLN03150 369 TLLEEVSALQTLKSSLGL-PL--RFGWNGDPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDISKLRHLQ 445 (623)
T ss_pred cCchHHHHHHHHHHhcCC-cc--cCCCCCCCCCCcccccccceeeccCCCCceEEEEEECCCCCccccCCHHHhCCCCCC
Confidence 456799999999998863 22 237864321 1279999995321 3589999999999999999999999999
Q ss_pred EEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEcccccCCCCCchhccCC-CCCCeeecccC
Q 043006 100 SLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNL-SKLEMLDAMFN 178 (205)
Q Consensus 100 ~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~~~~l-~~L~~L~ls~n 178 (205)
.|++++|.++|.+|..++.+++|+.|++++|.++|.+|+.++++++|++|++++|+++|.+|..+... .++..+++.+|
T Consensus 446 ~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N 525 (623)
T PLN03150 446 SINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDN 525 (623)
T ss_pred EEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCC
Confidence 99999999999999999999999999999999999999999999999999999999999999988764 46778899988
Q ss_pred cCcccCC
Q 043006 179 VIDGSIP 185 (205)
Q Consensus 179 ~l~~~~p 185 (205)
......|
T Consensus 526 ~~lc~~p 532 (623)
T PLN03150 526 AGLCGIP 532 (623)
T ss_pred ccccCCC
Confidence 7654444
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.77 E-value=1.3e-18 Score=157.96 Aligned_cols=132 Identities=35% Similarity=0.530 Sum_probs=80.4
Q ss_pred cEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEcc
Q 043006 73 RVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSLC 152 (205)
Q Consensus 73 ~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~ 152 (205)
.+++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+.++++|++|+++
T Consensus 141 ~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~ 220 (968)
T PLN00113 141 NLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLG 220 (968)
T ss_pred CCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECc
Confidence 45555555555555556566666666666666666665666666666666666666666665566666666666666666
Q ss_pred cccCCCCCchhccCCCCCCeeecccCcCcccCChhhcCCCCCCEEEccCCCC
Q 043006 153 NNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNL 204 (205)
Q Consensus 153 ~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l 204 (205)
+|.+++.+|..+..+++|++|++++|.+.+.+|..++++++|++|++++|.+
T Consensus 221 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l 272 (968)
T PLN00113 221 YNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKL 272 (968)
T ss_pred CCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCee
Confidence 6666655666566666666666666666555555555555666666555543
No 4
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.67 E-value=1.6e-18 Score=123.77 Aligned_cols=130 Identities=27% Similarity=0.430 Sum_probs=112.9
Q ss_pred CCcEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEE
Q 043006 71 HQRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILS 150 (205)
Q Consensus 71 ~~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~ 150 (205)
...++.|.+++|.++ .+|+.+..+.+|+.|++.+|+++ .+|.+++.++.|+.|++..|++. .+|..|+.++.|+.||
T Consensus 32 ~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levld 108 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLD 108 (264)
T ss_pred hhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhh
Confidence 367899999999998 78888999999999999999998 78999999999999999999998 8999999999999999
Q ss_pred cccccCCC-CCchhccCCCCCCeeecccCcCcccCChhhcCCCCCCEEEccCCCC
Q 043006 151 LCNNSLTG-LIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNL 204 (205)
Q Consensus 151 l~~n~l~~-~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l 204 (205)
+..|++.. .+|..|..+..|+-|++++|.+. .+|..++++++|+.|.+..|.+
T Consensus 109 ltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndl 162 (264)
T KOG0617|consen 109 LTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDL 162 (264)
T ss_pred ccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCch
Confidence 99998874 56777777777888888888876 7777788888888887777753
No 5
>PLN03150 hypothetical protein; Provisional
Probab=99.57 E-value=9.5e-15 Score=126.74 Aligned_cols=107 Identities=29% Similarity=0.513 Sum_probs=100.4
Q ss_pred CCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEcccccCCCCCchhccCCCCCCeeecc
Q 043006 97 FLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAM 176 (205)
Q Consensus 97 ~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~ls 176 (205)
.++.|+|++|.++|.+|..+..+++|+.|++++|.+.|.+|..++.+++|+.|++++|+++|.+|+.++.+++|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcCcccCChhhcCC-CCCCEEEccCCC
Q 043006 177 FNVIDGSIPSGIRNL-SNLFNLNLGYNN 203 (205)
Q Consensus 177 ~n~l~~~~p~~~~~l-~~L~~L~ls~N~ 203 (205)
+|.++|.+|..++.. .++..+++++|.
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCc
Confidence 999999999988764 467788988885
No 6
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.56 E-value=5.1e-17 Score=116.15 Aligned_cols=130 Identities=25% Similarity=0.419 Sum_probs=111.9
Q ss_pred CcEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCC-CCCCccccCCCCCCEEE
Q 043006 72 QRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLS-GSIPTWIGVLSKLRILS 150 (205)
Q Consensus 72 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~-~~~p~~~~~l~~L~~l~ 150 (205)
.+++.|++.+|.++ .+|.+++.+++|+.|+++.|.+. .+|..|+.++.|+.||+++|.+. ..+|..|..++.|+.|.
T Consensus 56 ~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlraly 133 (264)
T KOG0617|consen 56 KNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALY 133 (264)
T ss_pred hhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHH
Confidence 56788899999987 78889999999999999999987 78999999999999999988874 45787788888888889
Q ss_pred cccccCCCCCchhccCCCCCCeeecccCcCcccCChhhcCCCCCCEEEccCCCCC
Q 043006 151 LCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNLQ 205 (205)
Q Consensus 151 l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~ 205 (205)
++.|.+. .+|..++.+++|++|.+.+|.+- ++|..++.+..|++|.+++|.++
T Consensus 134 l~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~ 186 (264)
T KOG0617|consen 134 LGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT 186 (264)
T ss_pred hcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee
Confidence 9999888 77888888999999999888887 78888888888888888888753
No 7
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.46 E-value=1.1e-14 Score=116.32 Aligned_cols=130 Identities=32% Similarity=0.436 Sum_probs=113.5
Q ss_pred cEEEEEcCCCCcc-----------------------ccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEccc
Q 043006 73 RVTALNHLDMGLG-----------------------GTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTF 129 (205)
Q Consensus 73 ~l~~L~l~~~~l~-----------------------~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~ 129 (205)
-|+.++++.|++. +-+|..++.+++|+.|++++|.+. .+|.+++.+..||+++++.
T Consensus 389 ~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~ 467 (565)
T KOG0472|consen 389 IVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSF 467 (565)
T ss_pred ceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccc
Confidence 4888888888643 235556788899999999999987 7899999999999999999
Q ss_pred CcCCCCCCccccCCCCCCEEEcccccCCCCCchhccCCCCCCeeecccCcCcccCChhhcCCCCCCEEEccCCCCC
Q 043006 130 NKLSGSIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNLQ 205 (205)
Q Consensus 130 n~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~ 205 (205)
|+|. .+|..+..+..++.+-.++|++...-|..+.++.+|..||+.+|.+. .+|+.++++.+|++|++++|+|+
T Consensus 468 NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 468 NRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred cccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence 9998 88988888888888888889998666677999999999999999998 99999999999999999999874
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.45 E-value=5.6e-15 Score=122.70 Aligned_cols=132 Identities=26% Similarity=0.264 Sum_probs=86.0
Q ss_pred CcEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCC------
Q 043006 72 QRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSK------ 145 (205)
Q Consensus 72 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~------ 145 (205)
..+++|+++.|+++..-...+.+++.|+.|++++|.|...-+++|.-.++|+.|+++.|.++.-.+.+|..+..
T Consensus 269 ~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnL 348 (873)
T KOG4194|consen 269 EKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNL 348 (873)
T ss_pred cccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcc
Confidence 45777888888877655666777888888888888877666777777778888888888777333344444444
Q ss_pred ------------------CCEEEcccccCCCCCc---hhccCCCCCCeeecccCcCcccCCh-hhcCCCCCCEEEccCCC
Q 043006 146 ------------------LRILSLCNNSLTGLIP---NSLFNLSKLEMLDAMFNVIDGSIPS-GIRNLSNLFNLNLGYNN 203 (205)
Q Consensus 146 ------------------L~~l~l~~n~l~~~~p---~~~~~l~~L~~L~ls~n~l~~~~p~-~~~~l~~L~~L~ls~N~ 203 (205)
|++|||++|.+++.+. ..|.++++|+.|++.+|++. .||. .|..+.+|++|||.+|.
T Consensus 349 s~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk-~I~krAfsgl~~LE~LdL~~Na 427 (873)
T KOG4194|consen 349 SHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLK-SIPKRAFSGLEALEHLDLGDNA 427 (873)
T ss_pred cccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceee-ecchhhhccCcccceecCCCCc
Confidence 4555555554443332 23455666666666666665 4553 46667777777777775
Q ss_pred C
Q 043006 204 L 204 (205)
Q Consensus 204 l 204 (205)
|
T Consensus 428 i 428 (873)
T KOG4194|consen 428 I 428 (873)
T ss_pred c
Confidence 4
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.43 E-value=1.7e-14 Score=121.05 Aligned_cols=130 Identities=31% Similarity=0.408 Sum_probs=98.0
Q ss_pred CcEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccc-cCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEE
Q 043006 72 QRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHE-LGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILS 150 (205)
Q Consensus 72 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~-~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~ 150 (205)
..++.|+++.|.+. .+|..+...+.+-+|++++|+|. .+|.. |-+++.|-+||+++|++. .+|+.+..+..|++|.
T Consensus 103 ~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~ 179 (1255)
T KOG0444|consen 103 KDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLK 179 (1255)
T ss_pred ccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhh
Confidence 56778888888876 67777777778888888888887 56654 456777778888888887 7777777777777777
Q ss_pred cccccCC-------------------------CCCchhccCCCCCCeeecccCcCcccCChhhcCCCCCCEEEccCCCCC
Q 043006 151 LCNNSLT-------------------------GLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNLQ 205 (205)
Q Consensus 151 l~~n~l~-------------------------~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~ 205 (205)
|++|++. ..+|..+..+.+|+.+|+|.|++. .+|+.+-++++|+.|+||+|+|+
T Consensus 180 Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it 258 (1255)
T KOG0444|consen 180 LSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT 258 (1255)
T ss_pred cCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee
Confidence 7777654 125666667777888888888887 77888888888888888888764
No 10
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.42 E-value=6.6e-14 Score=116.45 Aligned_cols=132 Identities=23% Similarity=0.176 Sum_probs=72.5
Q ss_pred cEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEcc
Q 043006 73 RVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSLC 152 (205)
Q Consensus 73 ~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~ 152 (205)
.+..|.++.|+++..-+..|..+++|+.|++..|.+...-..+|..+++|+.|.+.+|.+.......|..+.++++|+|.
T Consensus 198 sL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~ 277 (873)
T KOG4194|consen 198 SLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLE 277 (873)
T ss_pred hheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecc
Confidence 45555555555553333344446666666666666553223344555555555555555442222334555556666666
Q ss_pred cccCCCCCchhccCCCCCCeeecccCcCcccCChhhcCCCCCCEEEccCCCC
Q 043006 153 NNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNL 204 (205)
Q Consensus 153 ~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l 204 (205)
.|+++..-...+.++.+|+.|++|+|.|....+.+|...++|++|+|++|+|
T Consensus 278 ~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i 329 (873)
T KOG4194|consen 278 TNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRI 329 (873)
T ss_pred cchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEecccccc
Confidence 6666644444555666666666666666655555566666666666666655
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.39 E-value=9.8e-15 Score=116.53 Aligned_cols=126 Identities=32% Similarity=0.346 Sum_probs=97.2
Q ss_pred CcEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCcccc-CCCCCCEEE
Q 043006 72 QRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIG-VLSKLRILS 150 (205)
Q Consensus 72 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~-~l~~L~~l~ 150 (205)
+++.++|...|-++ .+|+.++.+.+|..|+++.|.+. .+| +|.++..|+++.+..|+++ .+|..+. +++++.+||
T Consensus 183 ~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLD 258 (565)
T KOG0472|consen 183 KRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLD 258 (565)
T ss_pred HHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeee
Confidence 34555565555554 67777777777777777777776 566 6777777888888888777 6775544 788888889
Q ss_pred cccccCCCCCchhccCCCCCCeeecccCcCcccCChhhcCCCCCCEEEccCCCC
Q 043006 151 LCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNL 204 (205)
Q Consensus 151 l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l 204 (205)
++.|+++ .+|..++-+++|.+||+|+|.++ .+|.+++++ .|+.|-+-+|++
T Consensus 259 LRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPl 309 (565)
T KOG0472|consen 259 LRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPL 309 (565)
T ss_pred ccccccc-cCchHHHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCch
Confidence 8888888 77888888888888999988888 678788888 888888888875
No 12
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.31 E-value=1.5e-13 Score=115.48 Aligned_cols=128 Identities=28% Similarity=0.399 Sum_probs=93.0
Q ss_pred cEEEEEcCCCCccccCCccccCCCCCCEEEccCCcccc-ccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEc
Q 043006 73 RVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHG-HLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSL 151 (205)
Q Consensus 73 ~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~-~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l 151 (205)
.+++|.+.+|++. .+-.++..+++|+.+.++.|+++. -+|.++..+..|.+||++.|++. ..|..+-..+++.+|+|
T Consensus 56 kLEHLs~~HN~L~-~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNL 133 (1255)
T KOG0444|consen 56 KLEHLSMAHNQLI-SVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNL 133 (1255)
T ss_pred hhhhhhhhhhhhH-hhhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEc
Confidence 4556666666655 344456666666666776666652 35777777888888888888887 77777777778888888
Q ss_pred ccccCCCCCch-hccCCCCCCeeecccCcCcccCChhhcCCCCCCEEEccCCCC
Q 043006 152 CNNSLTGLIPN-SLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNL 204 (205)
Q Consensus 152 ~~n~l~~~~p~-~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l 204 (205)
++|++. .+|. .+.++..|-+||+|+|++. .+|+++.++..|+.|+|++|++
T Consensus 134 S~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL 185 (1255)
T KOG0444|consen 134 SYNNIE-TIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPL 185 (1255)
T ss_pred ccCccc-cCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChh
Confidence 888887 5554 4557778888888888887 7788888888888888888865
No 13
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.29 E-value=3.7e-12 Score=93.08 Aligned_cols=122 Identities=30% Similarity=0.313 Sum_probs=51.7
Q ss_pred CcEEEEEcCCCCccccCCcccc-CCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccc-cCCCCCCEE
Q 043006 72 QRVTALNHLDMGLGGTIPSHLG-NLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWI-GVLSKLRIL 149 (205)
Q Consensus 72 ~~l~~L~l~~~~l~~~~p~~l~-~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~-~~l~~L~~l 149 (205)
.+++.|++.+|.++. +. .+. .+.+|+.|++++|.++ .++ .+..++.|++|++++|+++ .+++.+ ..+++|++|
T Consensus 19 ~~~~~L~L~~n~I~~-Ie-~L~~~l~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L 93 (175)
T PF14580_consen 19 VKLRELNLRGNQIST-IE-NLGATLDKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQEL 93 (175)
T ss_dssp -------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS----S-CHHHHHH-TT--EE
T ss_pred ccccccccccccccc-cc-chhhhhcCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCC-ccccchHHhCCcCCEE
Confidence 357889999999873 32 354 4778999999999998 444 4778899999999999998 565544 468999999
Q ss_pred EcccccCCCCC-chhccCCCCCCeeecccCcCcccCCh----hhcCCCCCCEEEc
Q 043006 150 SLCNNSLTGLI-PNSLFNLSKLEMLDAMFNVIDGSIPS----GIRNLSNLFNLNL 199 (205)
Q Consensus 150 ~l~~n~l~~~~-p~~~~~l~~L~~L~ls~n~l~~~~p~----~~~~l~~L~~L~l 199 (205)
++++|++...- -..+..+++|+.|++.+|.+. ..+. .+..+++|+.||-
T Consensus 94 ~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~-~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 94 YLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC-EKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp E-TTS---SCCCCGGGGG-TT--EEE-TT-GGG-GSTTHHHHHHHH-TT-SEETT
T ss_pred ECcCCcCCChHHhHHHHcCCCcceeeccCCccc-chhhHHHHHHHHcChhheeCC
Confidence 99999987421 145678899999999999998 4454 3567889988874
No 14
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.28 E-value=1.4e-10 Score=102.25 Aligned_cols=118 Identities=27% Similarity=0.369 Sum_probs=82.0
Q ss_pred cEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEcc
Q 043006 73 RVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSLC 152 (205)
Q Consensus 73 ~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~ 152 (205)
+.+.|++++++++ .+|..+. +.++.|++++|.++ .+|..+. .+|++|++++|.++ .+|..+. ++|+.|+++
T Consensus 179 ~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls 249 (754)
T PRK15370 179 NKTELRLKILGLT-TIPACIP--EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELS 249 (754)
T ss_pred CceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECc
Confidence 3467777777776 4665553 46888888888888 5676543 57888888888887 6676543 467788888
Q ss_pred cccCCCCCchhccCCCCCCeeecccCcCcccCChhhcCCCCCCEEEccCCCCC
Q 043006 153 NNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNLQ 205 (205)
Q Consensus 153 ~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~ 205 (205)
+|.+. .+|..+. .+|+.|++++|+++ .+|..+. ++|+.|++++|+|+
T Consensus 250 ~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt 296 (754)
T PRK15370 250 INRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIR 296 (754)
T ss_pred CCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCccc
Confidence 88777 5565553 46777888877777 5666443 46777777777653
No 15
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.28 E-value=3.5e-13 Score=111.75 Aligned_cols=127 Identities=31% Similarity=0.432 Sum_probs=110.9
Q ss_pred CcEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEc
Q 043006 72 QRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSL 151 (205)
Q Consensus 72 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l 151 (205)
..++.++++.|.+. .+|..++.++ |+.|-+++|+++ .+|..++.+.+|..|+.+.|.+. .+|..++.+.+|+.+.+
T Consensus 121 ~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~v 196 (722)
T KOG0532|consen 121 EALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNV 196 (722)
T ss_pred hHHHHhhhccchhh-cCChhhhcCc-ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHH
Confidence 45677888888887 6787787776 888899999987 78888888888999999999988 88888999999999999
Q ss_pred ccccCCCCCchhccCCCCCCeeecccCcCcccCChhhcCCCCCCEEEccCCCCC
Q 043006 152 CNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNLQ 205 (205)
Q Consensus 152 ~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~ 205 (205)
..|++. .+|+.+..++ |..||+|.|+++ .+|-.|.+|+.|++|-|.+|.++
T Consensus 197 rRn~l~-~lp~El~~Lp-Li~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 197 RRNHLE-DLPEELCSLP-LIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred hhhhhh-hCCHHHhCCc-eeeeecccCcee-ecchhhhhhhhheeeeeccCCCC
Confidence 999998 6788888666 899999999998 99999999999999999999874
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.26 E-value=2.1e-11 Score=107.14 Aligned_cols=56 Identities=30% Similarity=0.335 Sum_probs=40.1
Q ss_pred CCCEEEcccccCCCCCchhccCCCCCCeeecccCcCcccCChhhcCCCCCCEEEccCCCCC
Q 043006 145 KLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNLQ 205 (205)
Q Consensus 145 ~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~ 205 (205)
+|+.|++++|.++ .+|.. ..+|+.|++++|+++ .+|..++++++|+.+++++|+|+
T Consensus 403 ~L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls 458 (788)
T PRK15387 403 ELKELMVSGNRLT-SLPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLS 458 (788)
T ss_pred CCCEEEccCCcCC-CCCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCC
Confidence 4455555555555 23432 235677788888887 78888999999999999999875
No 17
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.25 E-value=2.8e-13 Score=117.56 Aligned_cols=127 Identities=26% Similarity=0.352 Sum_probs=107.8
Q ss_pred CcEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccc-cCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEE
Q 043006 72 QRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHE-LGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILS 150 (205)
Q Consensus 72 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~-~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~ 150 (205)
..++.|++.+|.++...-+.+.++++|+.|++++|++. .+|.. +.++..|+.|++++|+++ .+|..+..+..|++|.
T Consensus 359 ~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ 436 (1081)
T KOG0618|consen 359 AALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN-SFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLR 436 (1081)
T ss_pred HHHHHHHHhcCcccccchhhhccccceeeeeecccccc-cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHh
Confidence 45778899999999888778999999999999999997 56654 678899999999999999 8999999999999999
Q ss_pred cccccCCCCCchhccCCCCCCeeecccCcCcc-cCChhhcCCCCCCEEEccCCC
Q 043006 151 LCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDG-SIPSGIRNLSNLFNLNLGYNN 203 (205)
Q Consensus 151 l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~-~~p~~~~~l~~L~~L~ls~N~ 203 (205)
..+|++. .+| .+..++.|+.+|+|.|+++. .+|... .-++|++||+++|.
T Consensus 437 ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~-p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 437 AHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEAL-PSPNLKYLDLSGNT 487 (1081)
T ss_pred hcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhC-CCcccceeeccCCc
Confidence 9999999 778 68899999999999999972 344322 22789999999995
No 18
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.25 E-value=7.1e-12 Score=91.61 Aligned_cols=108 Identities=27% Similarity=0.365 Sum_probs=41.6
Q ss_pred ccCCCCCCEEEccCCccccccccccC-CCCCCcEEEcccCcCCCCCCccccCCCCCCEEEcccccCCCCCchhc-cCCCC
Q 043006 92 LGNLLFLMSLDLTLNNFHGHLAHELG-QLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSLCNNSLTGLIPNSL-FNLSK 169 (205)
Q Consensus 92 l~~l~~L~~L~l~~n~~~~~~p~~~~-~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~~-~~l~~ 169 (205)
+.+..++++|++++|.|+ .+. .++ .+.+|+.|++++|.++ .++ .+..++.|++|++++|.++. +++.+ ..+++
T Consensus 15 ~~n~~~~~~L~L~~n~I~-~Ie-~L~~~l~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~ 89 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQIS-TIE-NLGATLDKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRISS-ISEGLDKNLPN 89 (175)
T ss_dssp -----------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS---S--CHHHHHH-TT
T ss_pred cccccccccccccccccc-ccc-chhhhhcCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCCc-cccchHHhCCc
Confidence 344557899999999998 443 354 5789999999999998 554 57789999999999999994 44444 46899
Q ss_pred CCeeecccCcCcccCC--hhhcCCCCCCEEEccCCCCC
Q 043006 170 LEMLDAMFNVIDGSIP--SGIRNLSNLFNLNLGYNNLQ 205 (205)
Q Consensus 170 L~~L~ls~n~l~~~~p--~~~~~l~~L~~L~ls~N~l~ 205 (205)
|++|++++|++.. +- ..++.+++|+.|++.+|+++
T Consensus 90 L~~L~L~~N~I~~-l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 90 LQELYLSNNKISD-LNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp --EEE-TTS---S-CCCCGGGGG-TT--EEE-TT-GGG
T ss_pred CCEEECcCCcCCC-hHHhHHHHcCCCcceeeccCCccc
Confidence 9999999999973 22 34778999999999999863
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.25 E-value=2.3e-12 Score=103.09 Aligned_cols=132 Identities=29% Similarity=0.319 Sum_probs=56.1
Q ss_pred CcEEEEEcCCCCccccCCccccCCCC---CCEEEccCCcccc----ccccccCCC-CCCcEEEcccCcCCCC----CCcc
Q 043006 72 QRVTALNHLDMGLGGTIPSHLGNLLF---LMSLDLTLNNFHG----HLAHELGQL-RRLRFISFTFNKLSGS----IPTW 139 (205)
Q Consensus 72 ~~l~~L~l~~~~l~~~~p~~l~~l~~---L~~L~l~~n~~~~----~~p~~~~~l-~~L~~L~l~~n~l~~~----~p~~ 139 (205)
.+++.|+++++.+.+..+..+..+.. |++|++++|.+++ .+...+..+ ++|+.+++++|.+++. ++..
T Consensus 81 ~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~ 160 (319)
T cd00116 81 CGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKA 160 (319)
T ss_pred CceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHH
Confidence 34555555555554333333333333 5555555555441 112223333 4555555555555421 1122
Q ss_pred ccCCCCCCEEEcccccCCCC----CchhccCCCCCCeeecccCcCccc----CChhhcCCCCCCEEEccCCC
Q 043006 140 IGVLSKLRILSLCNNSLTGL----IPNSLFNLSKLEMLDAMFNVIDGS----IPSGIRNLSNLFNLNLGYNN 203 (205)
Q Consensus 140 ~~~l~~L~~l~l~~n~l~~~----~p~~~~~l~~L~~L~ls~n~l~~~----~p~~~~~l~~L~~L~ls~N~ 203 (205)
+..+++|++|++++|.+++. ++..+...++|+.|++++|.+++. ++..+.++++|++|++++|.
T Consensus 161 ~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~ 232 (319)
T cd00116 161 LRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNN 232 (319)
T ss_pred HHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCc
Confidence 33344455555555544421 122223334455555555544321 12223344445555554444
No 20
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.22 E-value=1.4e-12 Score=101.08 Aligned_cols=128 Identities=27% Similarity=0.286 Sum_probs=108.1
Q ss_pred CCcEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEE
Q 043006 71 HQRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILS 150 (205)
Q Consensus 71 ~~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~ 150 (205)
+..++.+|+++|.++ .++.+..-++.+++|+++.|.+. .+.. +..+.+|+.||+++|.++ .+..+..++.+.++|.
T Consensus 283 Wq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v~n-La~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~ 358 (490)
T KOG1259|consen 283 WQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TVQN-LAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLK 358 (490)
T ss_pred Hhhhhhccccccchh-hhhhhhhhccceeEEecccccee-eehh-hhhcccceEeecccchhH-hhhhhHhhhcCEeeee
Confidence 356889999999997 78888888999999999999997 4443 778899999999999998 7777778889999999
Q ss_pred cccccCCCCCchhccCCCCCCeeecccCcCcccCC--hhhcCCCCCCEEEccCCCCC
Q 043006 151 LCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIP--SGIRNLSNLFNLNLGYNNLQ 205 (205)
Q Consensus 151 l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p--~~~~~l~~L~~L~ls~N~l~ 205 (205)
+++|.+... ..+..+.+|..||+++|+|. ..- ..+++++.|+++.+.+|+++
T Consensus 359 La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie-~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 359 LAQNKIETL--SGLRKLYSLVNLDLSSNQIE-ELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred hhhhhHhhh--hhhHhhhhheeccccccchh-hHHHhcccccccHHHHHhhcCCCcc
Confidence 999988732 34677889999999999997 333 35889999999999999874
No 21
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.20 E-value=5.9e-12 Score=100.78 Aligned_cols=132 Identities=23% Similarity=0.214 Sum_probs=65.7
Q ss_pred cEEEEEcCCCCcccc----CCccccCCCCCCEEEccCCccccc----cccccCCCCCCcEEEcccCcCCCC----CCccc
Q 043006 73 RVTALNHLDMGLGGT----IPSHLGNLLFLMSLDLTLNNFHGH----LAHELGQLRRLRFISFTFNKLSGS----IPTWI 140 (205)
Q Consensus 73 ~l~~L~l~~~~l~~~----~p~~l~~l~~L~~L~l~~n~~~~~----~p~~~~~l~~L~~L~l~~n~l~~~----~p~~~ 140 (205)
+++.+++++|.+++. ++..+..+++|++|++++|.+++. ++..+..+++|++|++++|.+++. ++..+
T Consensus 138 ~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~ 217 (319)
T cd00116 138 ALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETL 217 (319)
T ss_pred CceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHh
Confidence 455555555555421 222344444555666655555521 222233345666666666655422 12234
Q ss_pred cCCCCCCEEEcccccCCCCCchhcc-----CCCCCCeeecccCcCc----ccCChhhcCCCCCCEEEccCCCC
Q 043006 141 GVLSKLRILSLCNNSLTGLIPNSLF-----NLSKLEMLDAMFNVID----GSIPSGIRNLSNLFNLNLGYNNL 204 (205)
Q Consensus 141 ~~l~~L~~l~l~~n~l~~~~p~~~~-----~l~~L~~L~ls~n~l~----~~~p~~~~~l~~L~~L~ls~N~l 204 (205)
..+++|++|++++|.+++.....+. ..+.|+.|++++|.++ ..+...+..+++|+++++++|.+
T Consensus 218 ~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l 290 (319)
T cd00116 218 ASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKF 290 (319)
T ss_pred cccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCC
Confidence 4455666666666666542121111 1256666666666664 12233344556666777776665
No 22
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.17 E-value=6.3e-11 Score=104.30 Aligned_cols=119 Identities=27% Similarity=0.399 Sum_probs=75.1
Q ss_pred cEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCcccc-----------
Q 043006 73 RVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIG----------- 141 (205)
Q Consensus 73 ~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~----------- 141 (205)
.++.|++++|.+. .+|..+. ..|++|++++|+++ .+|..+. ++|++|++++|+++ .+|..+.
T Consensus 242 ~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp~sL~~L~Ls~N 314 (754)
T PRK15370 242 TIQEMELSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIR-TLPAHLPSGITHLNVQSN 314 (754)
T ss_pred cccEEECcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCccc-cCcccchhhHHHHHhcCC
Confidence 5778888888876 5666554 36778888887777 4665443 46777777777776 4443221
Q ss_pred --------CCCCCCEEEcccccCCCCCchhccCCCCCCeeecccCcCcccCChhhcCCCCCCEEEccCCCC
Q 043006 142 --------VLSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNL 204 (205)
Q Consensus 142 --------~l~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l 204 (205)
..++|+.|++++|.+++ +|..+. ++|+.|++++|+++ .+|..+. ++|+.|++++|+|
T Consensus 315 ~Lt~LP~~l~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~L 379 (754)
T PRK15370 315 SLTALPETLPPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNAL 379 (754)
T ss_pred ccccCCccccccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcC
Confidence 11356666666666653 454332 56777777777776 5665442 4677777777765
No 23
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.09 E-value=6.3e-10 Score=103.08 Aligned_cols=126 Identities=18% Similarity=0.139 Sum_probs=99.1
Q ss_pred CcEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEc
Q 043006 72 QRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSL 151 (205)
Q Consensus 72 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l 151 (205)
..++.|++++|...+.+|..+.++++|+.|++++|...+.+|..+ .+++|+.|++++|..-..+|.. .++|++|++
T Consensus 778 ~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~L 853 (1153)
T PLN03210 778 PSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNL 853 (1153)
T ss_pred ccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccccCEeEC
Confidence 467888888887777888888899999999998876555777665 6888999999887654455543 367889999
Q ss_pred ccccCCCCCchhccCCCCCCeeecccCcCcccCChhhcCCCCCCEEEccCC
Q 043006 152 CNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYN 202 (205)
Q Consensus 152 ~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~N 202 (205)
++|.++ .+|..+..+++|+.|++++|+--..+|..+..+++|+.++++++
T Consensus 854 s~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C 903 (1153)
T PLN03210 854 SRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDC 903 (1153)
T ss_pred CCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCC
Confidence 999888 67888889999999999885433367877788888888888776
No 24
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.09 E-value=1e-09 Score=101.64 Aligned_cols=124 Identities=28% Similarity=0.312 Sum_probs=58.4
Q ss_pred EEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEccc
Q 043006 74 VTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSLCN 153 (205)
Q Consensus 74 l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~ 153 (205)
++.|.+.++.+. .+|..+ .+.+|++|++++|.+. .++..+..+++|+.++++++.....+|. +..+++|++|++++
T Consensus 591 Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~ 666 (1153)
T PLN03210 591 LRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSD 666 (1153)
T ss_pred cEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecC
Confidence 444444444432 334333 2345555555555554 3444444555555555554433224442 44455555555555
Q ss_pred ccCCCCCchhccCCCCCCeeecccCcCcccCChhhcCCCCCCEEEccCC
Q 043006 154 NSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYN 202 (205)
Q Consensus 154 n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~N 202 (205)
|.....+|..+..+++|+.|++++|...+.+|..+ ++++|+.|++++|
T Consensus 667 c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc 714 (1153)
T PLN03210 667 CSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGC 714 (1153)
T ss_pred CCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCC
Confidence 54334455555555555555555543333444433 3444444444443
No 25
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.08 E-value=6.5e-11 Score=71.70 Aligned_cols=60 Identities=43% Similarity=0.544 Sum_probs=34.6
Q ss_pred CCCEEEcccccCCCCCchhccCCCCCCeeecccCcCcccCChhhcCCCCCCEEEccCCCC
Q 043006 145 KLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNL 204 (205)
Q Consensus 145 ~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l 204 (205)
+|+++++++|+++...+..|..+++|++|++++|.++...|..|.++++|++|++++|+|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 455566666665543334555566666666666666544444556666666666666653
No 26
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.07 E-value=1e-11 Score=99.21 Aligned_cols=130 Identities=25% Similarity=0.260 Sum_probs=113.5
Q ss_pred CcEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEccc-CcCCCCCC-ccccCCCCCCEE
Q 043006 72 QRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTF-NKLSGSIP-TWIGVLSKLRIL 149 (205)
Q Consensus 72 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~-n~l~~~~p-~~~~~l~~L~~l 149 (205)
...+.|++..|.|+..-|..|+.+++|++|||+.|+|+..-|+.|..++++..|-+-+ |+|+ .+| ..|.++.+++.|
T Consensus 67 ~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~gL~slqrL 145 (498)
T KOG4237|consen 67 PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAFGGLSSLQRL 145 (498)
T ss_pred CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhhHHHHHHH
Confidence 5678999999999966667899999999999999999988899999999888776655 9999 666 568999999999
Q ss_pred EcccccCCCCCchhccCCCCCCeeecccCcCcccCCh-hhcCCCCCCEEEccCCC
Q 043006 150 SLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPS-GIRNLSNLFNLNLGYNN 203 (205)
Q Consensus 150 ~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~-~~~~l~~L~~L~ls~N~ 203 (205)
.+.-|++.-..++.|..++++..|.+.+|.+. .++. .+..+.+++.+.+..|.
T Consensus 146 llNan~i~Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 146 LLNANHINCIRQDALRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNP 199 (498)
T ss_pred hcChhhhcchhHHHHHHhhhcchhcccchhhh-hhccccccchhccchHhhhcCc
Confidence 99999999777888999999999999999998 7777 67888888888888876
No 27
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.04 E-value=9.9e-10 Score=96.75 Aligned_cols=116 Identities=28% Similarity=0.278 Sum_probs=73.6
Q ss_pred cEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEcc
Q 043006 73 RVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSLC 152 (205)
Q Consensus 73 ~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~ 152 (205)
.++.|++.+|.++ .+|.. +++|++|++++|+++ .+|.. .++|+.|++++|.++ .+|.. .++|+.|+++
T Consensus 223 ~L~~L~L~~N~Lt-~LP~l---p~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~Ls~N~L~-~Lp~l---p~~L~~L~Ls 290 (788)
T PRK15387 223 HITTLVIPDNNLT-SLPAL---PPELRTLEVSGNQLT-SLPVL---PPGLLELSIFSNPLT-HLPAL---PSGLCKLWIF 290 (788)
T ss_pred CCCEEEccCCcCC-CCCCC---CCCCcEEEecCCccC-cccCc---ccccceeeccCCchh-hhhhc---hhhcCEEECc
Confidence 4666777777666 34432 356777777777776 44532 356667777777666 45542 2457777888
Q ss_pred cccCCCCCchhccCCCCCCeeecccCcCcccCCh---hhcC-------------C-CCCCEEEccCCCCC
Q 043006 153 NNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPS---GIRN-------------L-SNLFNLNLGYNNLQ 205 (205)
Q Consensus 153 ~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~---~~~~-------------l-~~L~~L~ls~N~l~ 205 (205)
+|+++ .+|. ..++|+.|++++|.++ .+|. .+.. + .+|++|++++|+|+
T Consensus 291 ~N~Lt-~LP~---~p~~L~~LdLS~N~L~-~Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N~Ls 355 (788)
T PRK15387 291 GNQLT-SLPV---LPPGLQELSVSDNQLA-SLPALPSELCKLWAYNNQLTSLPTLPSGLQELSVSDNQLA 355 (788)
T ss_pred CCccc-cccc---cccccceeECCCCccc-cCCCCcccccccccccCccccccccccccceEecCCCccC
Confidence 88777 4454 2467899999999888 3443 1111 1 36888888888874
No 28
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.00 E-value=4.1e-10 Score=68.15 Aligned_cols=59 Identities=31% Similarity=0.375 Sum_probs=26.5
Q ss_pred CCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEccccc
Q 043006 97 FLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSLCNNS 155 (205)
Q Consensus 97 ~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~n~ 155 (205)
+|++|++++|+++...+..|..+++|++|++++|.++...|..|..+++|+++++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 34445555554442222334444445555554444443333344444444444444443
No 29
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.96 E-value=8.7e-11 Score=102.37 Aligned_cols=127 Identities=25% Similarity=0.289 Sum_probs=101.3
Q ss_pred CcEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEc
Q 043006 72 QRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSL 151 (205)
Q Consensus 72 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l 151 (205)
.+++.|++++|.++..-...+.++..|++|++++|.++ .+|.++..+..|++|...+|++. ..| .+..++.|+.+|+
T Consensus 383 ~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDl 459 (1081)
T KOG0618|consen 383 KHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDL 459 (1081)
T ss_pred cceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEec
Confidence 68999999999998443456888999999999999998 89999999999999999999999 889 7889999999999
Q ss_pred ccccCCCC-CchhccCCCCCCeeecccCcCcccCChhhcCCCCCCEEEccCC
Q 043006 152 CNNSLTGL-IPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYN 202 (205)
Q Consensus 152 ~~n~l~~~-~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~N 202 (205)
+.|+++.. +|... ..++|++||+++|.-...--..+..++++...+++-|
T Consensus 460 S~N~L~~~~l~~~~-p~p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~ 510 (1081)
T KOG0618|consen 460 SCNNLSEVTLPEAL-PSPNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLN 510 (1081)
T ss_pred ccchhhhhhhhhhC-CCcccceeeccCCcccccchhhhHHhhhhhheecccC
Confidence 99999853 33322 3389999999999732122233555666665555544
No 30
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.96 E-value=2.7e-10 Score=94.14 Aligned_cols=102 Identities=33% Similarity=0.451 Sum_probs=59.5
Q ss_pred cEEEEEcCCCCccccCCccccCCC-CCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEc
Q 043006 73 RVTALNHLDMGLGGTIPSHLGNLL-FLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSL 151 (205)
Q Consensus 73 ~l~~L~l~~~~l~~~~p~~l~~l~-~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l 151 (205)
.++.+++.++.++ .+|+....+. +|+.|++++|.+. .+|..+..++.|+.|+++.|.++ .+|...+..+.|+.+++
T Consensus 117 ~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~l 193 (394)
T COG4886 117 NLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDL 193 (394)
T ss_pred ceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhheec
Confidence 4666777777766 5555555553 6777777777766 45445566666666666666666 55554445566666666
Q ss_pred ccccCCCCCchhccCCCCCCeeecccC
Q 043006 152 CNNSLTGLIPNSLFNLSKLEMLDAMFN 178 (205)
Q Consensus 152 ~~n~l~~~~p~~~~~l~~L~~L~ls~n 178 (205)
++|+++ .+|........|+++.+++|
T Consensus 194 s~N~i~-~l~~~~~~~~~L~~l~~~~N 219 (394)
T COG4886 194 SGNKIS-DLPPEIELLSALEELDLSNN 219 (394)
T ss_pred cCCccc-cCchhhhhhhhhhhhhhcCC
Confidence 666665 33443333333444444444
No 31
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=98.94 E-value=1.4e-09 Score=60.85 Aligned_cols=40 Identities=38% Similarity=0.772 Sum_probs=31.1
Q ss_pred hhhHHHHHHHHhccccCCCCcCCCCCCC--CCCCcccceeeC
Q 043006 29 TTDQSALLAFKAHVVDYRSALANNWAMS--SPICNWIGISCG 68 (205)
Q Consensus 29 ~~~~~~l~~~~~~~~~~~~~~~~~w~~~--~~~c~w~gv~c~ 68 (205)
++|+++|++||+.+..++...+.+|+.. .++|.|.||+|+
T Consensus 2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~~~~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNNDPSGVLSSWNPSSDSDPCSWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT-SC-CCCTT--TT--S-CCCSTTEEE-
T ss_pred cHHHHHHHHHHHhcccccCcccccCCCcCCCCCeeeccEEeC
Confidence 5799999999999987777789999987 699999999995
No 32
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.90 E-value=4.2e-11 Score=99.61 Aligned_cols=122 Identities=31% Similarity=0.456 Sum_probs=90.9
Q ss_pred EEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEcccccC
Q 043006 77 LNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSLCNNSL 156 (205)
Q Consensus 77 L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~n~l 156 (205)
+.+..|.+- .+|..+.++..|++++|+.|+++ .+|..+..++ |+.|-+++|+++ .+|+.++....|..+|.+.|.+
T Consensus 103 liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei 178 (722)
T KOG0532|consen 103 LILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEI 178 (722)
T ss_pred HHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecCccc-cCCcccccchhHHHhhhhhhhh
Confidence 333334443 56777778888888888888887 6676665543 777888888887 7888888778888888888888
Q ss_pred CCCCchhccCCCCCCeeecccCcCcccCChhhcCCCCCCEEEccCCCCC
Q 043006 157 TGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNLQ 205 (205)
Q Consensus 157 ~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~ 205 (205)
. .+|..++.+.+|+.|.+..|++. .+|..+..+ .|..||+|.|+++
T Consensus 179 ~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis 224 (722)
T KOG0532|consen 179 Q-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS 224 (722)
T ss_pred h-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee
Confidence 8 66777888888888888888887 778777744 5677888888763
No 33
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.89 E-value=8.9e-10 Score=91.03 Aligned_cols=105 Identities=37% Similarity=0.464 Sum_probs=53.8
Q ss_pred CCCCCCEEEccCCccccccccccCCCC-CCcEEEcccCcCCCCCCccccCCCCCCEEEcccccCCCCCchhccCCCCCCe
Q 043006 94 NLLFLMSLDLTLNNFHGHLAHELGQLR-RLRFISFTFNKLSGSIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLEM 172 (205)
Q Consensus 94 ~l~~L~~L~l~~n~~~~~~p~~~~~l~-~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~~~~l~~L~~ 172 (205)
.++.++.+++.+|.++ .+|.....+. +|+.|++++|.+. .+|..+..+++|+.|++++|+++ .+|......+.|+.
T Consensus 114 ~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~ 190 (394)
T COG4886 114 ELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNN 190 (394)
T ss_pred cccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhh
Confidence 3344555555555555 4444444442 5555555555555 44444555555555555555555 33433334555555
Q ss_pred eecccCcCcccCChhhcCCCCCCEEEccCC
Q 043006 173 LDAMFNVIDGSIPSGIRNLSNLFNLNLGYN 202 (205)
Q Consensus 173 L~ls~n~l~~~~p~~~~~l~~L~~L~ls~N 202 (205)
|++++|.+. .+|........|+.+.+++|
T Consensus 191 L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N 219 (394)
T COG4886 191 LDLSGNKIS-DLPPEIELLSALEELDLSNN 219 (394)
T ss_pred eeccCCccc-cCchhhhhhhhhhhhhhcCC
Confidence 555555555 45544334444555555555
No 34
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.82 E-value=5.2e-10 Score=87.02 Aligned_cols=107 Identities=25% Similarity=0.347 Sum_probs=82.2
Q ss_pred ccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEcccccCCCCCchhccCCCCCC
Q 043006 92 LGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLE 171 (205)
Q Consensus 92 l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~~~~l~~L~ 171 (205)
+...+.|+++|+++|.|+ .+..+..-.+.++.|+++.|.+. .+. .+..+++|+.||+++|.++ .+...-..+-+.+
T Consensus 280 ~dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v~-nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIK 355 (490)
T KOG1259|consen 280 ADTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TVQ-NLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIK 355 (490)
T ss_pred cchHhhhhhccccccchh-hhhhhhhhccceeEEecccccee-eeh-hhhhcccceEeecccchhH-hhhhhHhhhcCEe
Confidence 344567888999999988 66666667788999999999887 333 3778889999999999888 3333334566788
Q ss_pred eeecccCcCcccCChhhcCCCCCCEEEccCCCC
Q 043006 172 MLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNL 204 (205)
Q Consensus 172 ~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l 204 (205)
.|.++.|.+. --..++++-+|..||+++|+|
T Consensus 356 tL~La~N~iE--~LSGL~KLYSLvnLDl~~N~I 386 (490)
T KOG1259|consen 356 TLKLAQNKIE--TLSGLRKLYSLVNLDLSSNQI 386 (490)
T ss_pred eeehhhhhHh--hhhhhHhhhhheeccccccch
Confidence 8889998886 334578888999999999987
No 35
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.79 E-value=4.9e-10 Score=89.73 Aligned_cols=125 Identities=26% Similarity=0.261 Sum_probs=102.7
Q ss_pred EEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEccc-cc
Q 043006 77 LNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSLCN-NS 155 (205)
Q Consensus 77 L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~-n~ 155 (205)
++-++.+++ .+|..+.. ..+.++|..|+|+...|..|+.+++|+.||++.|.|+...|+.|.+++++..+.+.+ |+
T Consensus 51 VdCr~~GL~-eVP~~LP~--~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~Nk 127 (498)
T KOG4237|consen 51 VDCRGKGLT-EVPANLPP--ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNK 127 (498)
T ss_pred EEccCCCcc-cCcccCCC--cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCc
Confidence 344455554 45654432 578899999999966667899999999999999999988899999999998888777 89
Q ss_pred CCCCCchhccCCCCCCeeecccCcCcccCChhhcCCCCCCEEEccCCCC
Q 043006 156 LTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNL 204 (205)
Q Consensus 156 l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l 204 (205)
++......|+++..++.|.+.-|++.-.....+..++++..|.+..|.+
T Consensus 128 I~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~ 176 (498)
T KOG4237|consen 128 ITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKI 176 (498)
T ss_pred hhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhh
Confidence 9966557899999999999999999855556789999999999988865
No 36
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.54 E-value=6e-10 Score=95.36 Aligned_cols=125 Identities=29% Similarity=0.356 Sum_probs=98.1
Q ss_pred cEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCcc-ccCCCCCCEEEc
Q 043006 73 RVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTW-IGVLSKLRILSL 151 (205)
Q Consensus 73 ~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~-~~~l~~L~~l~l 151 (205)
.+...++++|.+. .++.++.-++.+++|+|++|++.. .. .+..++.|++||+++|.+. .+|.- ...+. |+.|.+
T Consensus 165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~-v~-~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~l 239 (1096)
T KOG1859|consen 165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTK-VD-NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNL 239 (1096)
T ss_pred hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhh-hH-HHHhcccccccccccchhc-cccccchhhhh-heeeee
Confidence 4567788888887 778888889999999999999984 33 6788999999999999998 66642 33444 999999
Q ss_pred ccccCCCCCchhccCCCCCCeeecccCcCcccC-ChhhcCCCCCCEEEccCCCC
Q 043006 152 CNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSI-PSGIRNLSNLFNLNLGYNNL 204 (205)
Q Consensus 152 ~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~-p~~~~~l~~L~~L~ls~N~l 204 (205)
++|-++.. ..+.++++|+.||+++|-+.+-- -.-++.+..|+.|.|.+|++
T Consensus 240 rnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 240 RNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred cccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 99988833 35678899999999999887321 11256778888999999975
No 37
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.51 E-value=5.3e-08 Score=87.45 Aligned_cols=107 Identities=25% Similarity=0.306 Sum_probs=76.2
Q ss_pred CcEEEEEcCCCC--ccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEE
Q 043006 72 QRVTALNHLDMG--LGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRIL 149 (205)
Q Consensus 72 ~~l~~L~l~~~~--l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l 149 (205)
+.+++|-+.+|. +....+..|..++.|++||+++|.--+.+|..++.+-+|++|+++++.+. .+|.++.++..|.+|
T Consensus 545 ~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~L 623 (889)
T KOG4658|consen 545 PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYL 623 (889)
T ss_pred CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhhee
Confidence 456677776665 33222233666788888888877766678888888888888888888887 788888888888888
Q ss_pred EcccccCCCCCchhccCCCCCCeeecccCc
Q 043006 150 SLCNNSLTGLIPNSLFNLSKLEMLDAMFNV 179 (205)
Q Consensus 150 ~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~ 179 (205)
++..+.....+|.....+++|++|.+..-.
T Consensus 624 nl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 624 NLEVTGRLESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred ccccccccccccchhhhcccccEEEeeccc
Confidence 888776554556666667888888776544
No 38
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.47 E-value=1.5e-07 Score=52.80 Aligned_cols=37 Identities=41% Similarity=0.489 Sum_probs=25.9
Q ss_pred CCCCEEEcccccCCCCCchhccCCCCCCeeecccCcCc
Q 043006 144 SKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVID 181 (205)
Q Consensus 144 ~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~ 181 (205)
++|++|++++|+++ .+|..+..+++|+.|++++|+++
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 46777777777777 55666777777777777777776
No 39
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.44 E-value=5.4e-08 Score=79.05 Aligned_cols=62 Identities=27% Similarity=0.289 Sum_probs=38.3
Q ss_pred CCCCCCEEEcccccCCCCCc--hhccCCCCCCeeecccCcCccc-CChh-----hcCCCCCCEEEccCCCC
Q 043006 142 VLSKLRILSLCNNSLTGLIP--NSLFNLSKLEMLDAMFNVIDGS-IPSG-----IRNLSNLFNLNLGYNNL 204 (205)
Q Consensus 142 ~l~~L~~l~l~~n~l~~~~p--~~~~~l~~L~~L~ls~n~l~~~-~p~~-----~~~l~~L~~L~ls~N~l 204 (205)
.+..|+.|||++|++- ..+ ...+.++.|+.|+++.+.+... +|+. ...+++|++|+++.|+|
T Consensus 244 i~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I 313 (505)
T KOG3207|consen 244 ILQTLQELDLSNNNLI-DFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNI 313 (505)
T ss_pred hhhHHhhccccCCccc-ccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCcc
Confidence 3455777777777665 223 3455677777777777776522 3332 23566788888888776
No 40
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.44 E-value=1e-08 Score=71.12 Aligned_cols=113 Identities=22% Similarity=0.266 Sum_probs=90.0
Q ss_pred CcEEEEEcCCCCcc--ccCCccccCCCCCCEEEccCCccccccccccCC-CCCCcEEEcccCcCCCCCCccccCCCCCCE
Q 043006 72 QRVTALNHLDMGLG--GTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQ-LRRLRFISFTFNKLSGSIPTWIGVLSKLRI 148 (205)
Q Consensus 72 ~~l~~L~l~~~~l~--~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~-l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~ 148 (205)
.....++++.+.+- ...+..+....+|+..++++|.+. ..|+.|.. .+..+++++++|.++ .+|+.+..++.|+.
T Consensus 27 kE~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~ 104 (177)
T KOG4579|consen 27 KELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRS 104 (177)
T ss_pred HHhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhh
Confidence 44566788888654 123344566678888899999998 56766654 458899999999999 89988999999999
Q ss_pred EEcccccCCCCCchhccCCCCCCeeecccCcCcccCChhh
Q 043006 149 LSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGI 188 (205)
Q Consensus 149 l~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~ 188 (205)
++++.|++. ..|+.+..+.++..|+..+|.+. ++|-.+
T Consensus 105 lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl 142 (177)
T KOG4579|consen 105 LNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDL 142 (177)
T ss_pred cccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHH
Confidence 999999999 66888888999999999999887 777653
No 41
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.40 E-value=5.1e-08 Score=81.24 Aligned_cols=124 Identities=29% Similarity=0.408 Sum_probs=72.8
Q ss_pred EEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEccc
Q 043006 74 VTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSLCN 153 (205)
Q Consensus 74 l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~ 153 (205)
+..+++..|.+.. +-..+..++.++.+++.+|.+.+ +...+..+.+|++|++++|.|+.. . .+..++.|+.|++.+
T Consensus 74 l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~i-~-~l~~l~~L~~L~l~~ 149 (414)
T KOG0531|consen 74 LKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITKL-E-GLSTLTLLKELNLSG 149 (414)
T ss_pred HHhhccchhhhhh-hhcccccccceeeeeccccchhh-cccchhhhhcchheeccccccccc-c-chhhccchhhheecc
Confidence 3344455555542 22335666677777777777763 333255677777777777777632 2 244555577777777
Q ss_pred ccCCCCCchhccCCCCCCeeecccCcCcccCChh-hcCCCCCCEEEccCCCC
Q 043006 154 NSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSG-IRNLSNLFNLNLGYNNL 204 (205)
Q Consensus 154 n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~-~~~l~~L~~L~ls~N~l 204 (205)
|.++.. ..+..++.|+.+++++|.+. .+... ...+.+++.+++.+|.+
T Consensus 150 N~i~~~--~~~~~l~~L~~l~l~~n~i~-~ie~~~~~~~~~l~~l~l~~n~i 198 (414)
T KOG0531|consen 150 NLISDI--SGLESLKSLKLLDLSYNRIV-DIENDELSELISLEELDLGGNSI 198 (414)
T ss_pred Ccchhc--cCCccchhhhcccCCcchhh-hhhhhhhhhccchHHHhccCCch
Confidence 777622 23444667777777777776 33332 35566666666666654
No 42
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.39 E-value=2.9e-07 Score=82.77 Aligned_cols=126 Identities=25% Similarity=0.251 Sum_probs=95.5
Q ss_pred cEEEEEcCCCCccccCCccccCCCCCCEEEccCCc--cccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEE
Q 043006 73 RVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNN--FHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILS 150 (205)
Q Consensus 73 ~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~--~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~ 150 (205)
.++...+-++.+. .++.... .+.|+.|-+..|. +....+..|..++.|+.||+++|.=-+.+|..++.+-+|++|+
T Consensus 524 ~~rr~s~~~~~~~-~~~~~~~-~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~ 601 (889)
T KOG4658|consen 524 SVRRMSLMNNKIE-HIAGSSE-NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLD 601 (889)
T ss_pred heeEEEEeccchh-hccCCCC-CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhccc
Confidence 4555555556554 2222222 2368888888886 4422333477899999999998876668999999999999999
Q ss_pred cccccCCCCCchhccCCCCCCeeecccCcCcccCChhhcCCCCCCEEEccC
Q 043006 151 LCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGY 201 (205)
Q Consensus 151 l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~ 201 (205)
+++..+. .+|..+..++.|.+|++..+.-...+|.....+.+|++|.+..
T Consensus 602 L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~ 651 (889)
T KOG4658|consen 602 LSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPR 651 (889)
T ss_pred ccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeec
Confidence 9999999 8899999999999999998876656677677799999988754
No 43
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.39 E-value=1.6e-08 Score=70.13 Aligned_cols=112 Identities=22% Similarity=0.276 Sum_probs=86.7
Q ss_pred CCcEEEEEcCCCCccccCCccccC-CCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEE
Q 043006 71 HQRVTALNHLDMGLGGTIPSHLGN-LLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRIL 149 (205)
Q Consensus 71 ~~~l~~L~l~~~~l~~~~p~~l~~-l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l 149 (205)
..+++.+++++|.+. .+|+.|.. ++.++.+++++|.++ .+|..+..++.|+.++++.|.+. ..|..+..+.++..|
T Consensus 52 ~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~L 128 (177)
T KOG4579|consen 52 GYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDML 128 (177)
T ss_pred CceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHh
Confidence 367889999999998 56655544 558999999999998 78999999999999999999998 889888889999999
Q ss_pred EcccccCCCCCchhccCCCCCCeeecccCcCcccCCh
Q 043006 150 SLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPS 186 (205)
Q Consensus 150 ~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~ 186 (205)
+..+|.+- .+|-.+.--...-..++.++.+.+.-+.
T Consensus 129 ds~~na~~-eid~dl~~s~~~al~~lgnepl~~~~~~ 164 (177)
T KOG4579|consen 129 DSPENARA-EIDVDLFYSSLPALIKLGNEPLGDETKK 164 (177)
T ss_pred cCCCCccc-cCcHHHhccccHHHHHhcCCcccccCcc
Confidence 99999887 6664433222223345566666655443
No 44
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.34 E-value=9.3e-08 Score=77.72 Aligned_cols=131 Identities=25% Similarity=0.246 Sum_probs=86.6
Q ss_pred CcEEEEEcCCCCccc-cCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCC--ccccCCCCCCE
Q 043006 72 QRVTALNHLDMGLGG-TIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIP--TWIGVLSKLRI 148 (205)
Q Consensus 72 ~~l~~L~l~~~~l~~-~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p--~~~~~l~~L~~ 148 (205)
.+++.|.+++|+++- .+...+..++.|+.|++..|.....-.....-+..|+.|++++|.+- ..+ ...+.++.|..
T Consensus 197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~~ 275 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGYKVGTLPGLNQ 275 (505)
T ss_pred hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccc-ccccccccccccchhh
Confidence 455666666666552 23334455667777777777422222223344678899999999886 445 45678899999
Q ss_pred EEcccccCCCC-Cchh-----ccCCCCCCeeecccCcCcccCCh--hhcCCCCCCEEEccCCCC
Q 043006 149 LSLCNNSLTGL-IPNS-----LFNLSKLEMLDAMFNVIDGSIPS--GIRNLSNLFNLNLGYNNL 204 (205)
Q Consensus 149 l~l~~n~l~~~-~p~~-----~~~l~~L~~L~ls~n~l~~~~p~--~~~~l~~L~~L~ls~N~l 204 (205)
|+++.+.+... +|+. ...+++|++|++..|++. .++. .+..+.+|+.|.+..|.+
T Consensus 276 Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~-~w~sl~~l~~l~nlk~l~~~~n~l 338 (505)
T KOG3207|consen 276 LNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR-DWRSLNHLRTLENLKHLRITLNYL 338 (505)
T ss_pred hhccccCcchhcCCCccchhhhcccccceeeecccCccc-cccccchhhccchhhhhhcccccc
Confidence 99999988742 2322 346789999999999996 5553 355666777777777765
No 45
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.33 E-value=5.8e-07 Score=50.38 Aligned_cols=37 Identities=24% Similarity=0.495 Sum_probs=26.8
Q ss_pred CCCcEEEcccCcCCCCCCccccCCCCCCEEEcccccCC
Q 043006 120 RRLRFISFTFNKLSGSIPTWIGVLSKLRILSLCNNSLT 157 (205)
Q Consensus 120 ~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~n~l~ 157 (205)
++|++|++++|+++ .+|..+.++++|++|++++|+++
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 36777888888887 66766778888888888888777
No 46
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.24 E-value=2.8e-08 Score=85.38 Aligned_cols=102 Identities=28% Similarity=0.422 Sum_probs=78.2
Q ss_pred CCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEcccccCCCCCchhccCCCCCCeeecc
Q 043006 97 FLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAM 176 (205)
Q Consensus 97 ~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~ls 176 (205)
.|.+.+++.|.+. .+..++.-++.++.|++++|+++.. . .+..++.|++||++.|.+. .+|..-..-..|..|.+.
T Consensus 165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v-~-~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~lr 240 (1096)
T KOG1859|consen 165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV-D-NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNLR 240 (1096)
T ss_pred hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh-H-HHHhcccccccccccchhc-cccccchhhhhheeeeec
Confidence 4556677777776 5566666778899999999999833 3 7888999999999999999 556432222349999999
Q ss_pred cCcCcccCChhhcCCCCCCEEEccCCCC
Q 043006 177 FNVIDGSIPSGIRNLSNLFNLNLGYNNL 204 (205)
Q Consensus 177 ~n~l~~~~p~~~~~l~~L~~L~ls~N~l 204 (205)
+|.++ ++ ..+.++++|+.||+++|-|
T Consensus 241 nN~l~-tL-~gie~LksL~~LDlsyNll 266 (1096)
T KOG1859|consen 241 NNALT-TL-RGIENLKSLYGLDLSYNLL 266 (1096)
T ss_pred ccHHH-hh-hhHHhhhhhhccchhHhhh
Confidence 99997 43 3478999999999999965
No 47
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.22 E-value=3.4e-07 Score=76.35 Aligned_cols=107 Identities=29% Similarity=0.392 Sum_probs=86.6
Q ss_pred cCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEcccccCCCCCchhccCCCCCCe
Q 043006 93 GNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLEM 172 (205)
Q Consensus 93 ~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~~~~l~~L~~ 172 (205)
..+..++.+.++.|.+. .+-..+..+++|+.+++.+|.+. .+...+..+++|+++++++|.++... .+..++.|+.
T Consensus 69 ~~l~~l~~l~l~~n~i~-~~~~~l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~ 144 (414)
T KOG0531|consen 69 ESLTSLKELNLRQNLIA-KILNHLSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKE 144 (414)
T ss_pred HHhHhHHhhccchhhhh-hhhcccccccceeeeeccccchh-hcccchhhhhcchheecccccccccc--chhhccchhh
Confidence 34567778889999887 34445778899999999999998 55554778999999999999999553 3667778999
Q ss_pred eecccCcCcccCChhhcCCCCCCEEEccCCCCC
Q 043006 173 LDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNLQ 205 (205)
Q Consensus 173 L~ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~ 205 (205)
|++++|.++ .+.. +..+.+|+.+++++|.++
T Consensus 145 L~l~~N~i~-~~~~-~~~l~~L~~l~l~~n~i~ 175 (414)
T KOG0531|consen 145 LNLSGNLIS-DISG-LESLKSLKLLDLSYNRIV 175 (414)
T ss_pred heeccCcch-hccC-CccchhhhcccCCcchhh
Confidence 999999998 5443 566899999999999863
No 48
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.19 E-value=5.8e-07 Score=71.23 Aligned_cols=133 Identities=17% Similarity=0.159 Sum_probs=74.2
Q ss_pred CcEEEEEcCCCCccccCCc----cccCCCCCCEEEccCCccccccc-------------cccCCCCCCcEEEcccCcCCC
Q 043006 72 QRVTALNHLDMGLGGTIPS----HLGNLLFLMSLDLTLNNFHGHLA-------------HELGQLRRLRFISFTFNKLSG 134 (205)
Q Consensus 72 ~~l~~L~l~~~~l~~~~p~----~l~~l~~L~~L~l~~n~~~~~~p-------------~~~~~l~~L~~L~l~~n~l~~ 134 (205)
++++.++|++|.+...-++ -+...+.|++|.+.+|.+...-. .....-+.|+.+...+|++..
T Consensus 92 ~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen 171 (382)
T KOG1909|consen 92 PKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLEN 171 (382)
T ss_pred CceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccccc
Confidence 4788888888877644332 34446677777777777652111 112233455555555555431
Q ss_pred C--------------------------------CCccccCCCCCCEEEcccccCCCC----CchhccCCCCCCeeecccC
Q 043006 135 S--------------------------------IPTWIGVLSKLRILSLCNNSLTGL----IPNSLFNLSKLEMLDAMFN 178 (205)
Q Consensus 135 ~--------------------------------~p~~~~~l~~L~~l~l~~n~l~~~----~p~~~~~l~~L~~L~ls~n 178 (205)
. +...+..+++|+.||+..|-|+.. +...+..+++|+.+++++|
T Consensus 172 ~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dc 251 (382)
T KOG1909|consen 172 GGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDC 251 (382)
T ss_pred ccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccc
Confidence 1 112344566677777777766531 2334555666777777777
Q ss_pred cCcccCCh----hh-cCCCCCCEEEccCCCC
Q 043006 179 VIDGSIPS----GI-RNLSNLFNLNLGYNNL 204 (205)
Q Consensus 179 ~l~~~~p~----~~-~~l~~L~~L~ls~N~l 204 (205)
.+...-.. .+ ...++|+.+.+.+|.|
T Consensus 252 ll~~~Ga~a~~~al~~~~p~L~vl~l~gNeI 282 (382)
T KOG1909|consen 252 LLENEGAIAFVDALKESAPSLEVLELAGNEI 282 (382)
T ss_pred ccccccHHHHHHHHhccCCCCceeccCcchh
Confidence 66532221 22 2356677777777765
No 49
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.99 E-value=1.2e-05 Score=59.54 Aligned_cols=102 Identities=23% Similarity=0.190 Sum_probs=68.3
Q ss_pred cEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCC--ccccCCCCCCEEE
Q 043006 73 RVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIP--TWIGVLSKLRILS 150 (205)
Q Consensus 73 ~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p--~~~~~l~~L~~l~ 150 (205)
....+|+++|.+. .+ ..|..+++|.+|.+.+|.|+..-|.--.-+++|+.|.+.+|.+. .+. +.+..+|.|++|.
T Consensus 43 ~~d~iDLtdNdl~-~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~-~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 43 QFDAIDLTDNDLR-KL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQ-ELGDLDPLASCPKLEYLT 119 (233)
T ss_pred ccceecccccchh-hc-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchh-hhhhcchhccCCccceee
Confidence 4567788888775 22 23666778888888888888443432233567888888888876 332 3466778888888
Q ss_pred cccccCCCCC---chhccCCCCCCeeeccc
Q 043006 151 LCNNSLTGLI---PNSLFNLSKLEMLDAMF 177 (205)
Q Consensus 151 l~~n~l~~~~---p~~~~~l~~L~~L~ls~ 177 (205)
+-+|+.+..- --.+..+|+|+.||++.
T Consensus 120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred ecCCchhcccCceeEEEEecCcceEeehhh
Confidence 8888777321 12355678888888765
No 50
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.95 E-value=1.8e-05 Score=58.52 Aligned_cols=102 Identities=27% Similarity=0.324 Sum_probs=78.1
Q ss_pred CCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEcccccCCCCC-chhccCCCCCCeeec
Q 043006 97 FLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSLCNNSLTGLI-PNSLFNLSKLEMLDA 175 (205)
Q Consensus 97 ~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~-p~~~~~l~~L~~L~l 175 (205)
....+||++|.+. .++ .|..++.|.+|.+.+|.|+...|.--..+++|+.|.+.+|++...- -+.+..+|.|++|.+
T Consensus 43 ~~d~iDLtdNdl~-~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 43 QFDAIDLTDNDLR-KLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred ccceecccccchh-hcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence 5678999999986 333 4778999999999999999444443445688999999999988321 134667899999999
Q ss_pred ccCcCcccCCh----hhcCCCCCCEEEccC
Q 043006 176 MFNVIDGSIPS----GIRNLSNLFNLNLGY 201 (205)
Q Consensus 176 s~n~l~~~~p~----~~~~l~~L~~L~ls~ 201 (205)
-+|.+. ..+. .+..+++|+.||.+.
T Consensus 121 l~Npv~-~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 121 LGNPVE-HKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred cCCchh-cccCceeEEEEecCcceEeehhh
Confidence 999887 3333 357889999999753
No 51
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.86 E-value=4e-06 Score=66.60 Aligned_cols=133 Identities=19% Similarity=0.174 Sum_probs=97.3
Q ss_pred CcEEEEEcCCCCcccc----CCccccCCCCCCEEEccCCccccc----cccccCCCCCCcEEEcccCcCCCC----CCcc
Q 043006 72 QRVTALNHLDMGLGGT----IPSHLGNLLFLMSLDLTLNNFHGH----LAHELGQLRRLRFISFTFNKLSGS----IPTW 139 (205)
Q Consensus 72 ~~l~~L~l~~~~l~~~----~p~~l~~l~~L~~L~l~~n~~~~~----~p~~~~~l~~L~~L~l~~n~l~~~----~p~~ 139 (205)
..++++..+.|++... +...+...+.|+.+.++.|.|... +-..+..+++|+.||+.+|.|+.. +...
T Consensus 157 ~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Laka 236 (382)
T KOG1909|consen 157 PKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKA 236 (382)
T ss_pred cceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHH
Confidence 6788888888876521 333455567888899988887621 223467789999999999999733 2355
Q ss_pred ccCCCCCCEEEcccccCCCCCchhc-----cCCCCCCeeecccCcCccc----CChhhcCCCCCCEEEccCCCC
Q 043006 140 IGVLSKLRILSLCNNSLTGLIPNSL-----FNLSKLEMLDAMFNVIDGS----IPSGIRNLSNLFNLNLGYNNL 204 (205)
Q Consensus 140 ~~~l~~L~~l~l~~n~l~~~~p~~~-----~~l~~L~~L~ls~n~l~~~----~p~~~~~l~~L~~L~ls~N~l 204 (205)
+..+++|+.++++.|.+...-...+ ...|+|+++.+.+|.++.. +-..+...+.|+.|++++|.+
T Consensus 237 L~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 237 LSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred hcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 6778899999999999885433222 2468999999999999732 223456688899999999986
No 52
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.75 E-value=0.00013 Score=60.12 Aligned_cols=13 Identities=15% Similarity=-0.181 Sum_probs=7.3
Q ss_pred CCCeeecccCcCc
Q 043006 169 KLEMLDAMFNVID 181 (205)
Q Consensus 169 ~L~~L~ls~n~l~ 181 (205)
+|++|++++|...
T Consensus 157 SLk~L~Is~c~~i 169 (426)
T PRK15386 157 SLKTLSLTGCSNI 169 (426)
T ss_pred cccEEEecCCCcc
Confidence 4566666655543
No 53
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.64 E-value=4.9e-05 Score=67.10 Aligned_cols=107 Identities=23% Similarity=0.230 Sum_probs=61.7
Q ss_pred CCCCCEEEccCCccccc-cccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEcccccCCC-CCchhccCCCCCCe
Q 043006 95 LLFLMSLDLTLNNFHGH-LAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSLCNNSLTG-LIPNSLFNLSKLEM 172 (205)
Q Consensus 95 l~~L~~L~l~~n~~~~~-~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~n~l~~-~~p~~~~~l~~L~~ 172 (205)
||.|+.|.+.+-.+... ...-..++++|..||+++..++ .+ .+++++++|+.|.+.+=.+.. ..-..+..+++|+.
T Consensus 147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~-nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~v 224 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS-NL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRV 224 (699)
T ss_pred CcccceEEecCceecchhHHHHhhccCccceeecCCCCcc-Cc-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCe
Confidence 56677777766555321 1122345667777777777766 33 556677777777766544442 11134566777777
Q ss_pred eecccCcCcccCC---h----hhcCCCCCCEEEccCCCC
Q 043006 173 LDAMFNVIDGSIP---S----GIRNLSNLFNLNLGYNNL 204 (205)
Q Consensus 173 L~ls~n~l~~~~p---~----~~~~l~~L~~L~ls~N~l 204 (205)
||+|..... ..+ . .-..+++|+.||.|++.+
T Consensus 225 LDIS~~~~~-~~~~ii~qYlec~~~LpeLrfLDcSgTdi 262 (699)
T KOG3665|consen 225 LDISRDKNN-DDTKIIEQYLECGMVLPELRFLDCSGTDI 262 (699)
T ss_pred eeccccccc-cchHHHHHHHHhcccCccccEEecCCcch
Confidence 777765543 222 1 113467777777777654
No 54
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.59 E-value=4.7e-05 Score=58.35 Aligned_cols=64 Identities=22% Similarity=0.375 Sum_probs=31.3
Q ss_pred cCCCCCCcEEEcccC--cCCCCCCccccCCCCCCEEEcccccCCCCCchh---ccCCCCCCeeecccCcCc
Q 043006 116 LGQLRRLRFISFTFN--KLSGSIPTWIGVLSKLRILSLCNNSLTGLIPNS---LFNLSKLEMLDAMFNVID 181 (205)
Q Consensus 116 ~~~l~~L~~L~l~~n--~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~---~~~l~~L~~L~ls~n~l~ 181 (205)
+..+++|+.|.++.| ++.+.++...-.+++|+++++++|++.. +.. +..+.+|..|++.+|..+
T Consensus 61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~pl~~l~nL~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 61 FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLRPLKELENLKSLDLFNCSVT 129 (260)
T ss_pred CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccchhhhhcchhhhhcccCCcc
Confidence 344555566666655 3343333333344566666666665551 111 223344555555555544
No 55
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.41 E-value=1.3e-05 Score=62.78 Aligned_cols=59 Identities=19% Similarity=0.133 Sum_probs=43.2
Q ss_pred CCCCCCEEEcccc-cCCCCCchhccCCCCCCeeecccCcCcccCChh---hcCCCCCCEEEccCC
Q 043006 142 VLSKLRILSLCNN-SLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSG---IRNLSNLFNLNLGYN 202 (205)
Q Consensus 142 ~l~~L~~l~l~~n-~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~---~~~l~~L~~L~ls~N 202 (205)
.+++|.+|||+.| .++...-..|..++-|++|.++.|+. .+|.. +...++|.+||+.+.
T Consensus 311 rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 311 RCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred hCCceeeeccccccccCchHHHHHHhcchheeeehhhhcC--CChHHeeeeccCcceEEEEeccc
Confidence 4678888888877 45544455677888889999988875 36664 466778888887653
No 56
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.38 E-value=5.6e-05 Score=59.32 Aligned_cols=37 Identities=27% Similarity=0.367 Sum_probs=19.9
Q ss_pred CCCCCeeecccCcCcccCC--hhhcCCCCCCEEEccCCCC
Q 043006 167 LSKLEMLDAMFNVIDGSIP--SGIRNLSNLFNLNLGYNNL 204 (205)
Q Consensus 167 l~~L~~L~ls~n~l~~~~p--~~~~~l~~L~~L~ls~N~l 204 (205)
+|.+..|+++.|++. ... ..+.++++|..|.+++|++
T Consensus 223 ~p~~~~LnL~~~~id-swasvD~Ln~f~~l~dlRv~~~Pl 261 (418)
T KOG2982|consen 223 FPSLSCLNLGANNID-SWASVDALNGFPQLVDLRVSENPL 261 (418)
T ss_pred CCcchhhhhcccccc-cHHHHHHHcCCchhheeeccCCcc
Confidence 344445555555553 222 2355666666666666654
No 57
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.34 E-value=0.00042 Score=57.27 Aligned_cols=95 Identities=18% Similarity=0.206 Sum_probs=54.0
Q ss_pred CcEEEEEcCCCCccccCCccccCCCCCCEEEccCC-ccccccccccCCCCCCcEEEcccCcC--CCCCCccccCC-----
Q 043006 72 QRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLN-NFHGHLAHELGQLRRLRFISFTFNKL--SGSIPTWIGVL----- 143 (205)
Q Consensus 72 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n-~~~~~~p~~~~~l~~L~~L~l~~n~l--~~~~p~~~~~l----- 143 (205)
..++.|.++++.--..+|..+. ..|++|++++| .+. .+|. +|+.|++..+.. -+.+|.++..+
T Consensus 72 ~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~-sLP~------sLe~L~L~~n~~~~L~~LPssLk~L~I~~~ 142 (426)
T PRK15386 72 NELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEIS-GLPE------SVRSLEIKGSATDSIKNVPNGLTSLSINSY 142 (426)
T ss_pred CCCcEEEccCCCCcccCCchhh--hhhhheEccCccccc-cccc------ccceEEeCCCCCcccccCcchHhheecccc
Confidence 3567777766443234444332 36777777776 343 4443 345555554432 12455443322
Q ss_pred -------------CCCCEEEcccccCCCCCchhccCCCCCCeeecccC
Q 043006 144 -------------SKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFN 178 (205)
Q Consensus 144 -------------~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~ls~n 178 (205)
++|++|++++|... .+|..+. .+|+.|+++.+
T Consensus 143 n~~~~~~lp~~LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n 187 (426)
T PRK15386 143 NPENQARIDNLISPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIE 187 (426)
T ss_pred ccccccccccccCCcccEEEecCCCcc-cCccccc--ccCcEEEeccc
Confidence 37888999888765 3444333 58899998876
No 58
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.34 E-value=6.7e-05 Score=66.22 Aligned_cols=106 Identities=17% Similarity=0.257 Sum_probs=76.0
Q ss_pred CCCCEEEccCCccc-cccccccC-CCCCCcEEEcccCcCCCC-CCccccCCCCCCEEEcccccCCCCCchhccCCCCCCe
Q 043006 96 LFLMSLDLTLNNFH-GHLAHELG-QLRRLRFISFTFNKLSGS-IPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLEM 172 (205)
Q Consensus 96 ~~L~~L~l~~n~~~-~~~p~~~~-~l~~L~~L~l~~n~l~~~-~p~~~~~l~~L~~l~l~~n~l~~~~p~~~~~l~~L~~ 172 (205)
.+|++|++++...- ...|..++ -+|+|+.|.+.+-.+... .-.-..++++|..||+++.+++.. ..+.++++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 46888999886532 12233333 468999999988666422 224456889999999999999844 67889999999
Q ss_pred eecccCcCcc-cCChhhcCCCCCCEEEccCCC
Q 043006 173 LDAMFNVIDG-SIPSGIRNLSNLFNLNLGYNN 203 (205)
Q Consensus 173 L~ls~n~l~~-~~p~~~~~l~~L~~L~ls~N~ 203 (205)
|.+.+=.+.. ..-..+.++++|+.||+|...
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~ 231 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDK 231 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccc
Confidence 9888766651 111247789999999999753
No 59
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.33 E-value=0.00015 Score=55.62 Aligned_cols=82 Identities=26% Similarity=0.262 Sum_probs=58.5
Q ss_pred CCCCcEEEcccCcCCCCCCccccCCCCCCEEEcccc--cCCCCCchhccCCCCCCeeecccCcCcccCChh---hcCCCC
Q 043006 119 LRRLRFISFTFNKLSGSIPTWIGVLSKLRILSLCNN--SLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSG---IRNLSN 193 (205)
Q Consensus 119 l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~n--~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~---~~~l~~ 193 (205)
...|+.+.+.+..++ .+ ..+-.+++|+.|.++.| +.++.++-....+|+|+++++++|++. ++.. +..+.+
T Consensus 42 ~~~le~ls~~n~glt-t~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~--~lstl~pl~~l~n 117 (260)
T KOG2739|consen 42 FVELELLSVINVGLT-TL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK--DLSTLRPLKELEN 117 (260)
T ss_pred ccchhhhhhhcccee-ec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc--cccccchhhhhcc
Confidence 345555555555544 11 23557789999999999 777666655666799999999999997 3443 456778
Q ss_pred CCEEEccCCCC
Q 043006 194 LFNLNLGYNNL 204 (205)
Q Consensus 194 L~~L~ls~N~l 204 (205)
|..|++.+|..
T Consensus 118 L~~Ldl~n~~~ 128 (260)
T KOG2739|consen 118 LKSLDLFNCSV 128 (260)
T ss_pred hhhhhcccCCc
Confidence 88899988754
No 60
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.32 E-value=0.00021 Score=55.51 Aligned_cols=38 Identities=21% Similarity=0.347 Sum_probs=21.4
Q ss_pred CcEEEEEcCCCCccccCCcc----ccCCCCCCEEEccCCccc
Q 043006 72 QRVTALNHLDMGLGGTIPSH----LGNLLFLMSLDLTLNNFH 109 (205)
Q Consensus 72 ~~l~~L~l~~~~l~~~~p~~----l~~l~~L~~L~l~~n~~~ 109 (205)
++++.+++++|.+....|+. ++.-+.|++|.+++|.+.
T Consensus 92 p~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlG 133 (388)
T COG5238 92 PRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLG 133 (388)
T ss_pred CcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCC
Confidence 45666666666665444432 334455666666666553
No 61
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.19 E-value=5.8e-05 Score=59.26 Aligned_cols=86 Identities=29% Similarity=0.266 Sum_probs=55.7
Q ss_pred CCCCCEEEccCCccccc--cccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEcccccCCCC-CchhccCCCCCC
Q 043006 95 LLFLMSLDLTLNNFHGH--LAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSLCNNSLTGL-IPNSLFNLSKLE 171 (205)
Q Consensus 95 l~~L~~L~l~~n~~~~~--~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~n~l~~~-~p~~~~~l~~L~ 171 (205)
.+.++.+|+.+|.++.. +..-+..++.|++|+++.|.+...+-..-....+|+++.+.+..+.-. ....+..+|.++
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt 149 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT 149 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence 35678888888888742 223345678888888888887633222113556788888877766532 223445677788
Q ss_pred eeecccCcC
Q 043006 172 MLDAMFNVI 180 (205)
Q Consensus 172 ~L~ls~n~l 180 (205)
+|.+|.|++
T Consensus 150 elHmS~N~~ 158 (418)
T KOG2982|consen 150 ELHMSDNSL 158 (418)
T ss_pred hhhhccchh
Confidence 888887744
No 62
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.85 E-value=0.0014 Score=51.15 Aligned_cols=112 Identities=22% Similarity=0.186 Sum_probs=76.6
Q ss_pred ccccCCCCCCEEEccCCccccccccc----cCCCCCCcEEEcccCcCCCCCC-c-------------cccCCCCCCEEEc
Q 043006 90 SHLGNLLFLMSLDLTLNNFHGHLAHE----LGQLRRLRFISFTFNKLSGSIP-T-------------WIGVLSKLRILSL 151 (205)
Q Consensus 90 ~~l~~l~~L~~L~l~~n~~~~~~p~~----~~~l~~L~~L~l~~n~l~~~~p-~-------------~~~~l~~L~~l~l 151 (205)
+.+.+.++|+..++|.|.+....|.. ++..+.|.+|.+++|.+. .+. . -...-|.|+++..
T Consensus 86 ~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlG-p~aG~rigkal~~la~nKKaa~kp~Le~vic 164 (388)
T COG5238 86 KALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLG-PIAGGRIGKALFHLAYNKKAADKPKLEVVIC 164 (388)
T ss_pred HHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCC-ccchhHHHHHHHHHHHHhhhccCCCceEEEe
Confidence 34667889999999999988665543 456688999999999875 222 1 1224478999999
Q ss_pred ccccCCCCCch----hccCCCCCCeeecccCcCcccCCh--------hhcCCCCCCEEEccCCCCC
Q 043006 152 CNNSLTGLIPN----SLFNLSKLEMLDAMFNVIDGSIPS--------GIRNLSNLFNLNLGYNNLQ 205 (205)
Q Consensus 152 ~~n~l~~~~p~----~~~~l~~L~~L~ls~n~l~~~~p~--------~~~~l~~L~~L~ls~N~l~ 205 (205)
..|++-..... .+..-..|+.+.+..|.|. |. .+..+.+|+.||++.|-++
T Consensus 165 grNRlengs~~~~a~~l~sh~~lk~vki~qNgIr---pegv~~L~~~gl~y~~~LevLDlqDNtft 227 (388)
T COG5238 165 GRNRLENGSKELSAALLESHENLKEVKIQQNGIR---PEGVTMLAFLGLFYSHSLEVLDLQDNTFT 227 (388)
T ss_pred ccchhccCcHHHHHHHHHhhcCceeEEeeecCcC---cchhHHHHHHHHHHhCcceeeeccccchh
Confidence 99987632111 1223356778888888775 32 2356778888888888654
No 63
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.85 E-value=4.1e-05 Score=59.54 Aligned_cols=97 Identities=28% Similarity=0.322 Sum_probs=68.3
Q ss_pred cEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCc--cccCCCCCCEEE
Q 043006 73 RVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPT--WIGVLSKLRILS 150 (205)
Q Consensus 73 ~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~--~~~~l~~L~~l~ 150 (205)
.+..|++=++++... ....+|+.|++|.|+.|.|+..-| +..++.|++|++..|.|. .+.+ -+.++++|+.|.
T Consensus 20 ~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HhhhhcccCCCccHH--HHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhhhHh
Confidence 345556656665532 123567788999999999884333 678899999999999887 5543 367889999999
Q ss_pred cccccCCCCCchh-----ccCCCCCCeee
Q 043006 151 LCNNSLTGLIPNS-----LFNLSKLEMLD 174 (205)
Q Consensus 151 l~~n~l~~~~p~~-----~~~l~~L~~L~ 174 (205)
|..|+-.|.-+.. +..+|+|+.||
T Consensus 95 L~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 95 LDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hccCCcccccchhHHHHHHHHcccchhcc
Confidence 9999877654432 44577777775
No 64
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.83 E-value=0.0063 Score=41.81 Aligned_cols=116 Identities=16% Similarity=0.180 Sum_probs=56.5
Q ss_pred CcEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEc
Q 043006 72 QRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSL 151 (205)
Q Consensus 72 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l 151 (205)
..++.+.+.. .+...-...+...+.|+.+.+..+ +...-...|..+.+++.+.+.. .+.......+..+++++.+++
T Consensus 12 ~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~ 88 (129)
T PF13306_consen 12 SNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDI 88 (129)
T ss_dssp TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEE
T ss_pred CCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccccccccc
Confidence 4677777764 455444556777778888888775 5533344577777888888865 443233455677888888888
Q ss_pred ccccCCCCCchhccCCCCCCeeecccCcCcccCC-hhhcCCCCC
Q 043006 152 CNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIP-SGIRNLSNL 194 (205)
Q Consensus 152 ~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p-~~~~~l~~L 194 (205)
..+ +...-...+... +++.+.+.. .+. .++ ..|.++++|
T Consensus 89 ~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~-~i~~~~F~~~~~l 128 (129)
T PF13306_consen 89 PSN-ITEIGSSSFSNC-NLKEINIPS-NIT-KIEENAFKNCTKL 128 (129)
T ss_dssp TTT--BEEHTTTTTT--T--EEE-TT-B-S-S----GGG-----
T ss_pred Ccc-ccEEchhhhcCC-CceEEEECC-Ccc-EECCccccccccC
Confidence 765 442223445555 788887765 333 233 345666555
No 65
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=96.77 E-value=3.1e-05 Score=60.78 Aligned_cols=56 Identities=13% Similarity=0.118 Sum_probs=23.8
Q ss_pred EEEEEcCCCCccc-cCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEccc
Q 043006 74 VTALNHLDMGLGG-TIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTF 129 (205)
Q Consensus 74 l~~L~l~~~~l~~-~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~ 129 (205)
++++|++...++- .+..-+....+|+.|.+.++.+...+-..+..-.+|+.+++++
T Consensus 187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm 243 (419)
T KOG2120|consen 187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSM 243 (419)
T ss_pred hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeecccc
Confidence 4445555444431 1112223333444445555544443333444444455555444
No 66
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.67 E-value=0.00055 Score=32.09 Aligned_cols=19 Identities=47% Similarity=0.525 Sum_probs=10.5
Q ss_pred CCeeecccCcCcccCChhhc
Q 043006 170 LEMLDAMFNVIDGSIPSGIR 189 (205)
Q Consensus 170 L~~L~ls~n~l~~~~p~~~~ 189 (205)
|++||+++|+++ .+|..++
T Consensus 2 L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp ESEEEETSSEES-EEGTTTT
T ss_pred ccEEECCCCcCE-eCChhhc
Confidence 455566666555 5555443
No 67
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.44 E-value=0.014 Score=40.06 Aligned_cols=106 Identities=23% Similarity=0.205 Sum_probs=61.1
Q ss_pred cccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEcccccCCCCCchhccCCCCC
Q 043006 91 HLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKL 170 (205)
Q Consensus 91 ~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~~~~l~~L 170 (205)
.+.+..+|+.+.+.. .+...-...|..+++|+.+.+..+ +.......+.++++++.+.+.+ .+...-...|..++++
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL 83 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence 456667899999885 455344556888889999999875 6633446688888999999976 4442333456678999
Q ss_pred CeeecccCcCcccCC-hhhcCCCCCCEEEccCC
Q 043006 171 EMLDAMFNVIDGSIP-SGIRNLSNLFNLNLGYN 202 (205)
Q Consensus 171 ~~L~ls~n~l~~~~p-~~~~~l~~L~~L~ls~N 202 (205)
+.+++..+ +. .++ ..+.+. +++.+.+..+
T Consensus 84 ~~i~~~~~-~~-~i~~~~f~~~-~l~~i~~~~~ 113 (129)
T PF13306_consen 84 KNIDIPSN-IT-EIGSSSFSNC-NLKEINIPSN 113 (129)
T ss_dssp CEEEETTT--B-EEHTTTTTT--T--EEE-TTB
T ss_pred cccccCcc-cc-EEchhhhcCC-CceEEEECCC
Confidence 99999776 44 333 346666 8888887653
No 68
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.41 E-value=0.0021 Score=30.07 Aligned_cols=18 Identities=33% Similarity=0.447 Sum_probs=9.5
Q ss_pred CCEEEccCCcccccccccc
Q 043006 98 LMSLDLTLNNFHGHLAHEL 116 (205)
Q Consensus 98 L~~L~l~~n~~~~~~p~~~ 116 (205)
|++|++++|+++ .+|..|
T Consensus 2 L~~Ldls~n~l~-~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSF 19 (22)
T ss_dssp ESEEEETSSEES-EEGTTT
T ss_pred ccEEECCCCcCE-eCChhh
Confidence 455555555555 455443
No 69
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=96.23 E-value=9e-05 Score=56.26 Aligned_cols=84 Identities=20% Similarity=0.123 Sum_probs=73.3
Q ss_pred CCcEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEE
Q 043006 71 HQRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILS 150 (205)
Q Consensus 71 ~~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~ 150 (205)
..+++.||++.|.+. .+...++.++++..|+++.|.+. .+|.++.....++.+++..|..+ ..|.+++..+.+++++
T Consensus 41 ~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e 117 (326)
T KOG0473|consen 41 FKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNE 117 (326)
T ss_pred cceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhh
Confidence 378999999999876 44556777889999999999987 78999999999999999999988 8899999999999999
Q ss_pred cccccCC
Q 043006 151 LCNNSLT 157 (205)
Q Consensus 151 l~~n~l~ 157 (205)
+-+|.+.
T Consensus 118 ~k~~~~~ 124 (326)
T KOG0473|consen 118 QKKTEFF 124 (326)
T ss_pred hccCcch
Confidence 9998876
No 70
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.84 E-value=0.00036 Score=54.39 Aligned_cols=99 Identities=23% Similarity=0.212 Sum_probs=74.7
Q ss_pred CCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEcccccCCCCCc--hhccCCCCCCe
Q 043006 95 LLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSLCNNSLTGLIP--NSLFNLSKLEM 172 (205)
Q Consensus 95 l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p--~~~~~l~~L~~ 172 (205)
+...+.|++=++.++. +. -...|+.|+.|.++-|+|+.. ..+..+++|++|+|..|.+.. +- ..+.++|+|+.
T Consensus 18 l~~vkKLNcwg~~L~D-Is-ic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~s-ldEL~YLknlpsLr~ 92 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDD-IS-ICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIES-LDELEYLKNLPSLRT 92 (388)
T ss_pred HHHhhhhcccCCCccH-HH-HHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhccccc-HHHHHHHhcCchhhh
Confidence 4456777877777762 22 135789999999999999833 347789999999999999984 33 34568999999
Q ss_pred eecccCcCcccCChh-----hcCCCCCCEEE
Q 043006 173 LDAMFNVIDGSIPSG-----IRNLSNLFNLN 198 (205)
Q Consensus 173 L~ls~n~l~~~~p~~-----~~~l~~L~~L~ 198 (205)
|.+..|.-.|.-+.. +.-+++|+.||
T Consensus 93 LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 93 LWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred HhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 999999888766543 45677877776
No 71
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=95.35 E-value=0.0094 Score=25.94 Aligned_cols=13 Identities=31% Similarity=0.314 Sum_probs=4.6
Q ss_pred CCCeeecccCcCc
Q 043006 169 KLEMLDAMFNVID 181 (205)
Q Consensus 169 ~L~~L~ls~n~l~ 181 (205)
+|+.|++++|+++
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 3444444444443
No 72
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=94.92 E-value=0.00034 Score=53.20 Aligned_cols=89 Identities=15% Similarity=0.103 Sum_probs=75.1
Q ss_pred ccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEcccccCCCCCchhccCCCC
Q 043006 90 SHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSK 169 (205)
Q Consensus 90 ~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~~~~l~~ 169 (205)
.++..+.+.+.||++.|++- .+...|+.++.+..++++.|.+. .+|..++....+..+++..|.++ ..|.+++..+.
T Consensus 36 ~ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~ 112 (326)
T KOG0473|consen 36 REIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPH 112 (326)
T ss_pred hhhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCC
Confidence 35667778899999999876 56667788888999999999988 78888888888888999888888 77888999999
Q ss_pred CCeeecccCcCc
Q 043006 170 LEMLDAMFNVID 181 (205)
Q Consensus 170 L~~L~ls~n~l~ 181 (205)
+++++.-.|.+.
T Consensus 113 ~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 113 PKKNEQKKTEFF 124 (326)
T ss_pred cchhhhccCcch
Confidence 999999888765
No 73
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=92.82 E-value=0.12 Score=24.87 Aligned_cols=18 Identities=33% Similarity=0.468 Sum_probs=10.2
Q ss_pred CCCCeeecccCcCcccCCh
Q 043006 168 SKLEMLDAMFNVIDGSIPS 186 (205)
Q Consensus 168 ~~L~~L~ls~n~l~~~~p~ 186 (205)
++|+.|++++|.+. .+|.
T Consensus 2 ~~L~~L~L~~N~l~-~lp~ 19 (26)
T smart00369 2 PNLRELDLSNNQLS-SLPP 19 (26)
T ss_pred CCCCEEECCCCcCC-cCCH
Confidence 45566666666665 4454
No 74
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=92.82 E-value=0.12 Score=24.87 Aligned_cols=18 Identities=33% Similarity=0.468 Sum_probs=10.2
Q ss_pred CCCCeeecccCcCcccCCh
Q 043006 168 SKLEMLDAMFNVIDGSIPS 186 (205)
Q Consensus 168 ~~L~~L~ls~n~l~~~~p~ 186 (205)
++|+.|++++|.+. .+|.
T Consensus 2 ~~L~~L~L~~N~l~-~lp~ 19 (26)
T smart00370 2 PNLRELDLSNNQLS-SLPP 19 (26)
T ss_pred CCCCEEECCCCcCC-cCCH
Confidence 45566666666665 4454
No 75
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.63 E-value=0.041 Score=41.11 Aligned_cols=34 Identities=24% Similarity=0.194 Sum_probs=15.0
Q ss_pred cEEEEEcCCCCccccCCccccCCCCCCEEEccCC
Q 043006 73 RVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLN 106 (205)
Q Consensus 73 ~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n 106 (205)
.|+.++-++..+...--..+..++.++.|.+.++
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~c 135 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANC 135 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccc
Confidence 3555555555544332233444444444444443
No 76
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=90.14 E-value=0.041 Score=26.05 Aligned_cols=13 Identities=46% Similarity=0.440 Sum_probs=5.3
Q ss_pred CCCeeecccCcCc
Q 043006 169 KLEMLDAMFNVID 181 (205)
Q Consensus 169 ~L~~L~ls~n~l~ 181 (205)
+|+.|++++|.++
T Consensus 3 ~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 3 NLETLDLSNNQIT 15 (24)
T ss_dssp T-SEEE-TSSBEH
T ss_pred CCCEEEccCCcCC
Confidence 4445555555444
No 77
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=88.39 E-value=0.46 Score=23.09 Aligned_cols=13 Identities=38% Similarity=0.580 Sum_probs=7.0
Q ss_pred CCCCEEEccCCCC
Q 043006 192 SNLFNLNLGYNNL 204 (205)
Q Consensus 192 ~~L~~L~ls~N~l 204 (205)
.+|+.|++++|.|
T Consensus 2 ~~L~~L~L~~NkI 14 (26)
T smart00365 2 TNLEELDLSQNKI 14 (26)
T ss_pred CccCEEECCCCcc
Confidence 3455555555554
No 78
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=86.92 E-value=0.43 Score=23.19 Aligned_cols=18 Identities=28% Similarity=0.435 Sum_probs=12.8
Q ss_pred CCCCeeecccCcCcccCCh
Q 043006 168 SKLEMLDAMFNVIDGSIPS 186 (205)
Q Consensus 168 ~~L~~L~ls~n~l~~~~p~ 186 (205)
++|+.|++++|+++ .+|+
T Consensus 2 ~~L~~L~vs~N~Lt-~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLT-SLPE 19 (26)
T ss_pred cccceeecCCCccc-cCcc
Confidence 35777778888777 6665
No 79
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=86.91 E-value=0.29 Score=41.23 Aligned_cols=37 Identities=24% Similarity=0.192 Sum_probs=15.3
Q ss_pred CCCCCEEEccccc-CCCCCchhcc-CCCCCCeeecccCc
Q 043006 143 LSKLRILSLCNNS-LTGLIPNSLF-NLSKLEMLDAMFNV 179 (205)
Q Consensus 143 l~~L~~l~l~~n~-l~~~~p~~~~-~l~~L~~L~ls~n~ 179 (205)
+.+|+.++++.+. ++...-..+. .+++|+.|.+.++.
T Consensus 242 ~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~ 280 (482)
T KOG1947|consen 242 CRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCS 280 (482)
T ss_pred cCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCC
Confidence 3445555555544 3322111111 24455555544444
No 80
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=86.08 E-value=0.0056 Score=52.05 Aligned_cols=132 Identities=24% Similarity=0.264 Sum_probs=77.1
Q ss_pred cEEEEEcCCCCccc----cCCccccCCCCCCEEEccCCcccc----cccccc----CCCCCCcEEEcccCcCCCCCC---
Q 043006 73 RVTALNHLDMGLGG----TIPSHLGNLLFLMSLDLTLNNFHG----HLAHEL----GQLRRLRFISFTFNKLSGSIP--- 137 (205)
Q Consensus 73 ~l~~L~l~~~~l~~----~~p~~l~~l~~L~~L~l~~n~~~~----~~p~~~----~~l~~L~~L~l~~n~l~~~~p--- 137 (205)
.++.+++..+.++. .+...+.....++.++++.|.+.. .++..+ ....++++|.+++|.++...-
T Consensus 145 ~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l 224 (478)
T KOG4308|consen 145 LLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALL 224 (478)
T ss_pred HHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHH
Confidence 44556666666553 244455556677777777777631 112222 245677778887777662111
Q ss_pred -ccccCCCC-CCEEEcccccCCCC----CchhccCC-CCCCeeecccCcCccc----CChhhcCCCCCCEEEccCCCC
Q 043006 138 -TWIGVLSK-LRILSLCNNSLTGL----IPNSLFNL-SKLEMLDAMFNVIDGS----IPSGIRNLSNLFNLNLGYNNL 204 (205)
Q Consensus 138 -~~~~~l~~-L~~l~l~~n~l~~~----~p~~~~~l-~~L~~L~ls~n~l~~~----~p~~~~~l~~L~~L~ls~N~l 204 (205)
..+...+. +..+++..|.+.+. +...+..+ ..++.++++.|.++.. ++..+..++.++++.++.|.+
T Consensus 225 ~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l 302 (478)
T KOG4308|consen 225 DEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPL 302 (478)
T ss_pred HHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcc
Confidence 12233344 56678888877643 22233444 5678888888888743 233445666778888888765
No 81
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=85.53 E-value=0.77 Score=22.57 Aligned_cols=12 Identities=42% Similarity=0.567 Sum_probs=6.9
Q ss_pred CCCEEEccCCCC
Q 043006 193 NLFNLNLGYNNL 204 (205)
Q Consensus 193 ~L~~L~ls~N~l 204 (205)
+|++|||++|.|
T Consensus 3 ~L~~LdL~~N~i 14 (28)
T smart00368 3 SLRELDLSNNKL 14 (28)
T ss_pred ccCEEECCCCCC
Confidence 455566666654
No 82
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.53 E-value=0.42 Score=35.85 Aligned_cols=81 Identities=19% Similarity=0.140 Sum_probs=57.7
Q ss_pred CCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCC-Ccccc-CCCCCCEEEcccc-cCCCCCchhccCCCCCCee
Q 043006 97 FLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSI-PTWIG-VLSKLRILSLCNN-SLTGLIPNSLFNLSKLEML 173 (205)
Q Consensus 97 ~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~-p~~~~-~l~~L~~l~l~~n-~l~~~~p~~~~~l~~L~~L 173 (205)
.++.+|-++..|...--..+..++.++.|.+.++.-.+.. -+-++ -.++|+.|++++| ++|..--..+..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 5788898988887655566778888888888877533211 11122 3479999999988 6886555667788888888
Q ss_pred eccc
Q 043006 174 DAMF 177 (205)
Q Consensus 174 ~ls~ 177 (205)
.+.+
T Consensus 182 ~l~~ 185 (221)
T KOG3864|consen 182 HLYD 185 (221)
T ss_pred HhcC
Confidence 7765
No 83
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=80.49 E-value=0.41 Score=40.31 Aligned_cols=89 Identities=20% Similarity=0.010 Sum_probs=44.1
Q ss_pred ccCCCCCCEEEccCC-ccccccc----cccCCCCCCcEEEcccCc-CCCCCCcccc-CCCCCCEEEccccc-CCCC-Cch
Q 043006 92 LGNLLFLMSLDLTLN-NFHGHLA----HELGQLRRLRFISFTFNK-LSGSIPTWIG-VLSKLRILSLCNNS-LTGL-IPN 162 (205)
Q Consensus 92 l~~l~~L~~L~l~~n-~~~~~~p----~~~~~l~~L~~L~l~~n~-l~~~~p~~~~-~l~~L~~l~l~~n~-l~~~-~p~ 162 (205)
....+.|+.|+++++ ......+ .....+++|+.++++.+. ++...-..+. .+++|++|.+.++. +++. +-.
T Consensus 210 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~ 289 (482)
T KOG1947|consen 210 ALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVS 289 (482)
T ss_pred HhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHH
Confidence 444556777776652 1110111 122334666777776665 4422222222 25677777765554 4422 112
Q ss_pred hccCCCCCCeeecccCcC
Q 043006 163 SLFNLSKLEMLDAMFNVI 180 (205)
Q Consensus 163 ~~~~l~~L~~L~ls~n~l 180 (205)
....++.|+.|+++++..
T Consensus 290 i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 290 IAERCPSLRELDLSGCHG 307 (482)
T ss_pred HHHhcCcccEEeeecCcc
Confidence 223556677777776654
No 84
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=64.38 E-value=3.5 Score=35.61 Aligned_cols=61 Identities=25% Similarity=0.193 Sum_probs=26.3
Q ss_pred CCCCCEEEccCCccccccc---cccCCCCCCcEEEcccC--cCCCCCCcccc--CCCCCCEEEcccccCCC
Q 043006 95 LLFLMSLDLTLNNFHGHLA---HELGQLRRLRFISFTFN--KLSGSIPTWIG--VLSKLRILSLCNNSLTG 158 (205)
Q Consensus 95 l~~L~~L~l~~n~~~~~~p---~~~~~l~~L~~L~l~~n--~l~~~~p~~~~--~l~~L~~l~l~~n~l~~ 158 (205)
.+.+..+.+++|++.. +. .--...++|.+|+|++| .+. ..+ ++. +...|++|.+.+|++..
T Consensus 217 ~p~i~sl~lsnNrL~~-Ld~~sslsq~apklk~L~LS~N~~~~~-~~~-el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYH-LDALSSLSQIAPKLKTLDLSHNHSKIS-SES-ELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred Ccceeeeecccchhhc-hhhhhHHHHhcchhheeecccchhhhc-chh-hhhhhcCCCHHHeeecCCcccc
Confidence 3445555555555541 11 00112345556666665 222 111 111 22345566666665553
No 85
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=47.61 E-value=15 Score=24.00 Aligned_cols=13 Identities=38% Similarity=0.460 Sum_probs=6.4
Q ss_pred CchHHHHHHHHHH
Q 043006 1 MRLSIFFVPMLLL 13 (205)
Q Consensus 1 m~~~~~~~~~~~~ 13 (205)
|+...++++.+++
T Consensus 1 MaSK~~llL~l~L 13 (95)
T PF07172_consen 1 MASKAFLLLGLLL 13 (95)
T ss_pred CchhHHHHHHHHH
Confidence 6655544444443
No 86
>PF02950 Conotoxin: Conotoxin; InterPro: IPR004214 Cone snail toxins, conotoxins, are small neurotoxic peptides with disulphide connectivity that target ion-channels or G-protein coupled receptors. Based on the number and pattern of disulphide bonds and biological activities, conotoxins can be classified into several families []. Omega, delta and kappa families of conotoxins have a knottin or inhibitor cysteine knot scaffold. The knottin scaffold is a very special disulphide-through-disulphide knot, in which the III-VI disulphide bond crosses the macrocycle formed by two other disulphide bonds (I-IV and II-V) and the interconnecting backbone segments, where I-VI indicates the six cysteine residues starting from the N terminus. The disulphide bonding network, as well as specific amino acids in inter-cysteine loops, provide the specificity of conotoxins []. The cysteine arrangements are the same for omega, delta and kappa families, even though omega conotoxins are calcium channel blockers, whereas delta conotoxins delay the inactivation of sodium channels, and kappa conotoxins are potassium channel blockers []. Mu conotoxins have two types of cysteine arrangements, but the knottin scaffold is not observed. Mu conotoxins target the voltage-gated sodium channels [], and are useful probes for investigating voltage-dependent sodium channels of excitable tissues []. Alpha conotoxins have two types of cysteine arrangements [], and are competitive nicotinic acetylcholine receptor antagonists. ; GO: 0008200 ion channel inhibitor activity, 0009405 pathogenesis, 0005576 extracellular region; PDB: 2EFZ_A 1FYG_A 1RMK_A 1DG0_A 1DFY_A 1DFZ_A 2JQC_A 2YYF_A 2JQB_A 1F3K_A ....
Probab=46.17 E-value=7.4 Score=23.90 Aligned_cols=15 Identities=27% Similarity=0.454 Sum_probs=0.0
Q ss_pred CchHHHHHHHHHHHH
Q 043006 1 MRLSIFFVPMLLLQY 15 (205)
Q Consensus 1 m~~~~~~~~~~~~~~ 15 (205)
|++..++++.++++.
T Consensus 1 mKLt~vliVavLllt 15 (75)
T PF02950_consen 1 MKLTCVLIVAVLLLT 15 (75)
T ss_dssp ---------------
T ss_pred CCcchHHHHHHHHHH
Confidence 566644444444433
No 87
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=45.81 E-value=16 Score=17.21 Aligned_cols=12 Identities=25% Similarity=0.077 Sum_probs=8.4
Q ss_pred CCCCeeecccCc
Q 043006 168 SKLEMLDAMFNV 179 (205)
Q Consensus 168 ~~L~~L~ls~n~ 179 (205)
++|++|++++|.
T Consensus 2 ~~L~~L~l~~C~ 13 (26)
T smart00367 2 PNLRELDLSGCT 13 (26)
T ss_pred CCCCEeCCCCCC
Confidence 567777777764
No 88
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=44.37 E-value=1 Score=38.55 Aligned_cols=109 Identities=25% Similarity=0.243 Sum_probs=74.3
Q ss_pred CCCEEEccCCcccccc----ccccCCCCCCcEEEcccCcCCCCCC----ccccCC-CCCCEEEcccccCCC----CCchh
Q 043006 97 FLMSLDLTLNNFHGHL----AHELGQLRRLRFISFTFNKLSGSIP----TWIGVL-SKLRILSLCNNSLTG----LIPNS 163 (205)
Q Consensus 97 ~L~~L~l~~n~~~~~~----p~~~~~l~~L~~L~l~~n~l~~~~p----~~~~~l-~~L~~l~l~~n~l~~----~~p~~ 163 (205)
.+..+.+.+|.+.... -..+....+|+.|++++|.+.+.-- +.+... ..+++|++..|.+++ .+++.
T Consensus 88 ~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~ 167 (478)
T KOG4308|consen 88 SLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAV 167 (478)
T ss_pred hHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHH
Confidence 4778888998887432 2345667889999999998873221 223333 567778888888875 34566
Q ss_pred ccCCCCCCeeecccCcCc--c--cCChhhc----CCCCCCEEEccCCCCC
Q 043006 164 LFNLSKLEMLDAMFNVID--G--SIPSGIR----NLSNLFNLNLGYNNLQ 205 (205)
Q Consensus 164 ~~~l~~L~~L~ls~n~l~--~--~~p~~~~----~l~~L~~L~ls~N~l~ 205 (205)
+.....++.++++.|.+. | .++..+. ...++++|++++|.++
T Consensus 168 L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t 217 (478)
T KOG4308|consen 168 LEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVT 217 (478)
T ss_pred HhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcC
Confidence 667788999999999874 1 1333333 4667888888887653
No 89
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=43.26 E-value=14 Score=32.11 Aligned_cols=65 Identities=20% Similarity=0.197 Sum_probs=40.7
Q ss_pred CCCCCcEEEcccCcCCCCCC--ccc-cCCCCCCEEEcccc--cCCCCCc-hhccCCCCCCeeecccCcCcccC
Q 043006 118 QLRRLRFISFTFNKLSGSIP--TWI-GVLSKLRILSLCNN--SLTGLIP-NSLFNLSKLEMLDAMFNVIDGSI 184 (205)
Q Consensus 118 ~l~~L~~L~l~~n~l~~~~p--~~~-~~l~~L~~l~l~~n--~l~~~~p-~~~~~l~~L~~L~ls~n~l~~~~ 184 (205)
+.+.+..+++++|++- .+. .++ ...|+|+.|+|++| .+..... ..++ ...|++|-+.+|.+...+
T Consensus 216 n~p~i~sl~lsnNrL~-~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k-~l~Leel~l~GNPlc~tf 286 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLY-HLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLK-GLPLEELVLEGNPLCTTF 286 (585)
T ss_pred CCcceeeeecccchhh-chhhhhHHHHhcchhheeecccchhhhcchhhhhhhc-CCCHHHeeecCCccccch
Confidence 4466778889999876 322 112 34588999999999 4442211 1222 344888889999886443
No 90
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=36.41 E-value=24 Score=36.76 Aligned_cols=32 Identities=19% Similarity=0.118 Sum_probs=23.3
Q ss_pred EccCCccccccccccCCCCCCcEEEcccCcCC
Q 043006 102 DLTLNNFHGHLAHELGQLRRLRFISFTFNKLS 133 (205)
Q Consensus 102 ~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~ 133 (205)
||++|+|+-.-+..|..+++|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 57788887444455777888888888888765
No 91
>PF13956 Ibs_toxin: Toxin Ibs, type I toxin-antitoxin system
Probab=32.78 E-value=25 Score=15.34 Aligned_cols=11 Identities=45% Similarity=0.769 Sum_probs=4.8
Q ss_pred CchHHHHHHHH
Q 043006 1 MRLSIFFVPML 11 (205)
Q Consensus 1 m~~~~~~~~~~ 11 (205)
|+.+.+++.++
T Consensus 2 Mk~vIIlvvLL 12 (19)
T PF13956_consen 2 MKLVIILVVLL 12 (19)
T ss_pred ceehHHHHHHH
Confidence 44444444433
No 92
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=30.62 E-value=35 Score=29.34 Aligned_cols=16 Identities=25% Similarity=0.316 Sum_probs=7.5
Q ss_pred CcEEEcccCcCCCCCC
Q 043006 122 LRFISFTFNKLSGSIP 137 (205)
Q Consensus 122 L~~L~l~~n~l~~~~p 137 (205)
+.+++++.|.....+|
T Consensus 216 lteldls~n~~Kddip 231 (553)
T KOG4242|consen 216 LTELDLSTNGGKDDIP 231 (553)
T ss_pred ccccccccCCCCccch
Confidence 4445555554444444
No 93
>PF13260 DUF4051: Protein of unknown function (DUF4051)
Probab=28.06 E-value=1e+02 Score=17.26 Aligned_cols=15 Identities=27% Similarity=0.434 Sum_probs=11.4
Q ss_pred hhhHHHHHHHHhccc
Q 043006 29 TTDQSALLAFKAHVV 43 (205)
Q Consensus 29 ~~~~~~l~~~~~~~~ 43 (205)
.+|++||++.+..+-
T Consensus 30 rqdrdallear~kl~ 44 (54)
T PF13260_consen 30 RQDRDALLEARNKLF 44 (54)
T ss_pred hhhHHHHHHHHHHHH
Confidence 378899998887653
No 94
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=27.12 E-value=36 Score=28.80 Aligned_cols=13 Identities=38% Similarity=0.536 Sum_probs=5.8
Q ss_pred CCCCCCEEEcccc
Q 043006 142 VLSKLRILSLCNN 154 (205)
Q Consensus 142 ~l~~L~~l~l~~n 154 (205)
+++.|+.+.++++
T Consensus 370 ~C~~lr~lslshc 382 (483)
T KOG4341|consen 370 NCPRLRVLSLSHC 382 (483)
T ss_pred CCchhccCChhhh
Confidence 3344444444433
No 95
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=23.80 E-value=53 Score=34.49 Aligned_cols=33 Identities=21% Similarity=0.156 Sum_probs=26.7
Q ss_pred EcCCCCccccCCccccCCCCCCEEEccCCcccc
Q 043006 78 NHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHG 110 (205)
Q Consensus 78 ~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~ 110 (205)
||++|.|...-+..|..+++|++|+|++|.+.-
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~C 33 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFEC 33 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCcccc
Confidence 578899885555677788999999999998863
Done!