Query 043006
Match_columns 205
No_of_seqs 225 out of 2284
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 20:51:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043006.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043006hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ogq_A PGIP-2, polygalacturona 100.0 4.8E-32 1.6E-36 215.8 14.7 177 26-204 2-186 (313)
2 4eco_A Uncharacterized protein 100.0 4.3E-29 1.5E-33 215.9 12.2 177 27-205 27-318 (636)
3 3rgz_A Protein brassinosteroid 99.9 2.6E-27 9E-32 208.6 15.1 173 27-204 9-235 (768)
4 4ecn_A Leucine-rich repeat pro 99.9 2.5E-27 8.4E-32 210.2 10.6 172 27-205 266-561 (876)
5 4fcg_A Uncharacterized protein 99.9 6.3E-27 2.1E-31 187.4 8.3 175 26-204 23-218 (328)
6 3e6j_A Variable lymphocyte rec 99.9 2.3E-23 8E-28 158.6 15.1 155 50-205 9-172 (229)
7 2v9t_B SLIT homolog 2 protein 99.9 1.6E-22 5.6E-27 153.1 14.2 149 56-204 7-164 (220)
8 2o6s_A Variable lymphocyte rec 99.9 2.6E-22 9E-27 150.3 14.9 149 57-205 4-161 (208)
9 2v70_A SLIT-2, SLIT homolog 2 99.9 2E-22 6.9E-27 152.5 13.5 148 57-204 8-165 (220)
10 3m19_A Variable lymphocyte rec 99.9 6.6E-22 2.3E-26 152.4 13.4 132 73-204 60-191 (251)
11 3rgz_A Protein brassinosteroid 99.9 1.2E-21 4.1E-26 172.6 12.1 133 72-204 514-716 (768)
12 2o6q_A Variable lymphocyte rec 99.9 6.2E-21 2.1E-25 148.4 14.6 132 73-204 38-169 (270)
13 3m19_A Variable lymphocyte rec 99.8 2.6E-20 8.8E-25 143.4 14.4 134 72-205 35-168 (251)
14 4g8a_A TOLL-like receptor 4; l 99.8 1.8E-20 6.2E-25 160.7 13.6 134 72-205 52-186 (635)
15 3v47_A TOLL-like receptor 5B a 99.8 1.8E-20 6.3E-25 155.4 12.6 149 57-205 5-167 (455)
16 1ogq_A PGIP-2, polygalacturona 99.8 4.1E-21 1.4E-25 152.6 8.1 132 72-204 76-209 (313)
17 3rfs_A Internalin B, repeat mo 99.8 7.7E-20 2.6E-24 142.4 15.2 133 72-204 85-217 (272)
18 1w8a_A SLIT protein; signaling 99.8 3.1E-20 1.1E-24 137.6 11.9 128 75-205 11-139 (192)
19 3vq2_A TLR4, TOLL-like recepto 99.8 8.7E-20 3E-24 156.4 15.5 134 72-205 32-166 (606)
20 2xot_A Amphoterin-induced prot 99.8 6.6E-20 2.3E-24 148.4 13.6 148 57-205 15-176 (361)
21 2z80_A TOLL-like receptor 2, v 99.8 2.4E-20 8.1E-25 150.3 10.7 133 72-204 52-186 (353)
22 1ozn_A Reticulon 4 receptor; N 99.8 2E-19 6.7E-24 140.8 14.9 133 72-204 56-189 (285)
23 2z81_A CD282 antigen, TOLL-lik 99.8 4.1E-20 1.4E-24 156.7 10.6 146 59-205 3-161 (549)
24 4fcg_A Uncharacterized protein 99.8 5.7E-20 2E-24 146.9 10.5 130 72-203 127-288 (328)
25 2ell_A Acidic leucine-rich nuc 99.8 1.1E-19 3.8E-24 131.6 10.7 131 72-204 24-159 (168)
26 3rfs_A Internalin B, repeat mo 99.8 4.7E-19 1.6E-23 138.0 14.4 132 72-205 63-194 (272)
27 2z62_A TOLL-like receptor 4, v 99.8 3.5E-19 1.2E-23 138.8 13.6 134 72-205 28-162 (276)
28 3oja_B Anopheles plasmodium-re 99.8 1.3E-19 4.4E-24 155.5 11.9 161 45-205 4-184 (597)
29 3v47_A TOLL-like receptor 5B a 99.8 2.2E-19 7.6E-24 148.9 12.9 134 72-205 275-408 (455)
30 1ozn_A Reticulon 4 receptor; N 99.8 4.6E-19 1.6E-23 138.7 13.6 133 72-204 80-213 (285)
31 2id5_A Lingo-1, leucine rich r 99.8 2.9E-19 9.8E-24 149.3 13.2 133 72-204 32-164 (477)
32 2v9t_B SLIT homolog 2 protein 99.8 6.6E-19 2.2E-23 133.2 13.9 128 75-205 14-141 (220)
33 2je0_A Acidic leucine-rich nuc 99.8 1E-19 3.5E-24 129.2 8.6 128 72-201 17-149 (149)
34 2o6q_A Variable lymphocyte rec 99.8 9.5E-19 3.3E-23 136.0 14.8 132 73-204 86-217 (270)
35 2z66_A Variable lymphocyte rec 99.8 3.8E-19 1.3E-23 140.4 12.5 133 72-204 126-260 (306)
36 2wfh_A SLIT homolog 2 protein 99.8 8.5E-19 2.9E-23 130.0 13.3 125 76-204 14-138 (193)
37 3e6j_A Variable lymphocyte rec 99.8 9.1E-19 3.1E-23 133.2 13.8 135 62-205 14-148 (229)
38 4b8c_D Glucose-repressible alc 99.8 6.2E-20 2.1E-24 160.7 8.3 173 27-205 129-329 (727)
39 1p9a_G Platelet glycoprotein I 99.8 2.7E-18 9.1E-23 135.0 15.7 131 72-204 77-207 (290)
40 3t6q_A CD180 antigen; protein- 99.8 8.4E-19 2.9E-23 150.3 13.9 134 72-205 33-166 (606)
41 3zyi_A Leucine-rich repeat-con 99.8 7.2E-19 2.5E-23 146.1 12.8 133 72-204 75-208 (452)
42 1p9a_G Platelet glycoprotein I 99.8 1.3E-18 4.4E-23 136.8 13.3 130 72-205 55-185 (290)
43 3zyj_A Leucine-rich repeat-con 99.8 1.6E-18 5.6E-23 143.5 14.3 133 72-204 64-197 (440)
44 1w8a_A SLIT protein; signaling 99.8 8.1E-19 2.8E-23 130.0 10.6 129 57-185 5-143 (192)
45 2o6r_A Variable lymphocyte rec 99.8 4.9E-18 1.7E-22 123.9 14.5 132 58-204 5-136 (177)
46 2xwt_C Thyrotropin receptor; s 99.8 9.4E-19 3.2E-23 133.6 10.9 132 72-205 31-169 (239)
47 2v70_A SLIT-2, SLIT homolog 2 99.8 3.2E-18 1.1E-22 129.4 13.6 128 75-205 14-142 (220)
48 2z66_A Variable lymphocyte rec 99.8 1.2E-18 4.1E-23 137.5 11.6 133 72-204 101-235 (306)
49 3o6n_A APL1; leucine-rich repe 99.8 9.4E-19 3.2E-23 142.7 11.2 134 72-205 45-178 (390)
50 1xku_A Decorin; proteoglycan, 99.8 5.3E-18 1.8E-22 135.3 15.1 146 57-205 28-184 (330)
51 3j0a_A TOLL-like receptor 5; m 99.8 1.5E-18 5.1E-23 154.3 13.1 144 60-205 14-161 (844)
52 2z63_A TOLL-like receptor 4, v 99.8 3.2E-18 1.1E-22 145.5 14.2 134 72-205 28-162 (570)
53 1ziw_A TOLL-like receptor 3; i 99.8 1.8E-18 6.3E-23 150.1 13.0 133 72-204 25-157 (680)
54 4ezg_A Putative uncharacterize 99.8 2E-18 6.8E-23 128.2 11.1 127 72-204 66-193 (197)
55 2o6r_A Variable lymphocyte rec 99.8 2.9E-18 9.9E-23 125.1 11.3 114 72-185 28-141 (177)
56 3vq2_A TLR4, TOLL-like recepto 99.8 1.3E-18 4.5E-23 149.1 10.7 131 73-204 425-557 (606)
57 2ft3_A Biglycan; proteoglycan, 99.8 6E-18 2E-22 135.1 13.8 144 57-204 30-184 (332)
58 4ezg_A Putative uncharacterize 99.8 2.1E-18 7.1E-23 128.1 10.3 128 72-205 44-172 (197)
59 4eco_A Uncharacterized protein 99.8 1.4E-19 4.9E-24 156.4 4.5 131 72-204 206-365 (636)
60 2z62_A TOLL-like receptor 4, v 99.8 3.3E-18 1.1E-22 133.2 11.6 133 72-204 52-189 (276)
61 2z7x_B TOLL-like receptor 1, v 99.8 6.9E-18 2.4E-22 142.2 12.9 132 72-204 324-480 (520)
62 4g8a_A TOLL-like receptor 4; l 99.7 1.1E-17 3.6E-22 143.4 13.3 134 72-205 445-580 (635)
63 2o6s_A Variable lymphocyte rec 99.7 4E-17 1.4E-21 122.0 14.7 128 75-205 10-137 (208)
64 1wwl_A Monocyte differentiatio 99.7 1.2E-18 4.2E-23 138.1 6.3 133 72-205 121-266 (312)
65 2id5_A Lingo-1, leucine rich r 99.7 9.5E-18 3.2E-22 140.0 11.8 133 72-204 56-188 (477)
66 2z63_A TOLL-like receptor 4, v 99.7 7.9E-18 2.7E-22 143.0 11.2 133 73-205 397-531 (570)
67 3a79_B TLR6, VLRB.59, TOLL-lik 99.7 1.8E-17 6.2E-22 141.1 13.5 133 71-204 352-509 (562)
68 3oja_A Leucine-rich immune mol 99.7 1.1E-17 3.8E-22 140.4 11.9 141 60-205 109-250 (487)
69 2z80_A TOLL-like receptor 2, v 99.7 5.7E-18 2E-22 136.3 8.7 132 72-204 76-210 (353)
70 4ecn_A Leucine-rich repeat pro 99.7 2.3E-18 7.9E-23 153.0 6.7 130 72-204 448-607 (876)
71 1xku_A Decorin; proteoglycan, 99.7 3.8E-17 1.3E-21 130.3 12.8 128 74-205 147-276 (330)
72 2wfh_A SLIT homolog 2 protein 99.7 3.2E-17 1.1E-21 121.5 11.5 123 58-181 8-139 (193)
73 2z7x_B TOLL-like receptor 1, v 99.7 1.5E-17 5.1E-22 140.2 10.8 127 72-204 21-150 (520)
74 1wwl_A Monocyte differentiatio 99.7 3.8E-18 1.3E-22 135.3 6.7 131 72-205 149-287 (312)
75 2xot_A Amphoterin-induced prot 99.7 1E-17 3.6E-22 135.4 9.2 132 72-204 64-201 (361)
76 3t6q_A CD180 antigen; protein- 99.7 3.7E-17 1.3E-21 140.1 12.5 134 72-205 57-192 (606)
77 1a9n_A U2A', U2A'; complex (nu 99.7 2.7E-17 9.1E-22 120.0 9.7 127 72-204 19-152 (176)
78 3zyj_A Leucine-rich repeat-con 99.7 6E-17 2E-21 134.1 13.0 131 72-204 112-267 (440)
79 2ft3_A Biglycan; proteoglycan, 99.7 5.6E-17 1.9E-21 129.5 12.0 132 73-205 124-277 (332)
80 3o53_A Protein LRIM1, AGAP0063 99.7 3.2E-17 1.1E-21 130.2 10.4 130 72-205 120-250 (317)
81 3zyi_A Leucine-rich repeat-con 99.7 9.8E-17 3.3E-21 133.2 13.5 131 72-204 123-278 (452)
82 3o6n_A APL1; leucine-rich repe 99.7 1.3E-16 4.3E-21 130.0 14.0 129 72-204 69-198 (390)
83 3oja_B Anopheles plasmodium-re 99.7 1.1E-16 3.6E-21 137.5 14.0 130 72-204 75-204 (597)
84 4glp_A Monocyte differentiatio 99.7 1.2E-17 4.2E-22 132.2 7.3 129 72-204 145-284 (310)
85 2je0_A Acidic leucine-rich nuc 99.7 3.2E-17 1.1E-21 116.2 8.7 109 95-205 16-126 (149)
86 3a79_B TLR6, VLRB.59, TOLL-lik 99.7 7.5E-17 2.6E-21 137.3 12.4 127 72-204 52-181 (562)
87 2z81_A CD282 antigen, TOLL-lik 99.7 2.3E-17 7.8E-22 139.8 8.7 132 72-203 50-183 (549)
88 1ziw_A TOLL-like receptor 3; i 99.7 5.7E-17 1.9E-21 140.7 11.0 134 72-205 49-184 (680)
89 3g39_A Variable lymphocyte rec 99.7 1.9E-16 6.3E-21 115.0 11.9 106 75-183 12-117 (170)
90 2ell_A Acidic leucine-rich nuc 99.7 1E-16 3.6E-21 115.8 10.1 108 95-205 23-133 (168)
91 4glp_A Monocyte differentiatio 99.7 2.1E-17 7.1E-22 130.9 6.6 133 73-205 92-264 (310)
92 3oja_A Leucine-rich immune mol 99.7 3.1E-17 1.1E-21 137.7 7.9 129 72-204 58-203 (487)
93 1h6t_A Internalin B; cell adhe 99.7 3E-16 1E-20 123.3 13.0 123 72-204 68-190 (291)
94 3j0a_A TOLL-like receptor 5; m 99.7 1E-16 3.6E-21 142.5 10.8 132 72-203 48-185 (844)
95 1xeu_A Internalin C; cellular 99.7 4.7E-16 1.6E-20 120.5 13.1 122 72-204 63-184 (263)
96 1h6u_A Internalin H; cell adhe 99.7 4.9E-16 1.7E-20 123.0 13.2 122 73-204 86-207 (308)
97 2r9u_A Variable lymphocyte rec 99.7 4.2E-16 1.4E-20 113.6 11.8 108 75-186 15-122 (174)
98 2xwt_C Thyrotropin receptor; s 99.7 6.9E-17 2.4E-21 123.2 7.8 132 72-204 55-217 (239)
99 1dce_A Protein (RAB geranylger 99.7 2.1E-16 7E-21 134.9 11.3 122 73-199 442-567 (567)
100 3cvr_A Invasion plasmid antige 99.7 1.7E-16 5.8E-21 135.2 10.6 132 52-204 35-172 (571)
101 4fmz_A Internalin; leucine ric 99.7 3.2E-16 1.1E-20 125.5 11.0 126 72-205 221-346 (347)
102 1h6u_A Internalin H; cell adhe 99.7 1.1E-15 3.7E-20 121.1 13.9 124 72-205 63-186 (308)
103 1h6t_A Internalin B; cell adhe 99.7 1.7E-15 6E-20 119.0 13.2 124 72-205 46-169 (291)
104 1xeu_A Internalin C; cellular 99.7 7.6E-16 2.6E-20 119.4 11.0 123 72-205 41-163 (263)
105 4b8c_D Glucose-repressible alc 99.6 1.9E-17 6.6E-22 145.0 1.7 113 72-188 224-336 (727)
106 1m9s_A Internalin B; cell inva 99.6 1.5E-15 5E-20 130.5 13.2 123 72-204 65-187 (605)
107 3o53_A Protein LRIM1, AGAP0063 99.6 3.8E-16 1.3E-20 124.0 9.0 128 72-205 99-227 (317)
108 3g39_A Variable lymphocyte rec 99.6 1.4E-15 4.8E-20 110.4 11.1 85 73-157 31-115 (170)
109 2r9u_A Variable lymphocyte rec 99.6 3.5E-15 1.2E-19 108.7 11.7 103 99-204 15-117 (174)
110 4fmz_A Internalin; leucine ric 99.6 3.6E-15 1.2E-19 119.4 12.6 126 72-205 199-324 (347)
111 1dce_A Protein (RAB geranylger 99.6 1.7E-15 5.7E-20 129.3 10.8 104 97-205 442-546 (567)
112 1ds9_A Outer arm dynein; leuci 99.6 2.5E-18 8.7E-23 127.8 -6.7 122 72-198 48-180 (198)
113 1m9s_A Internalin B; cell inva 99.6 4.7E-15 1.6E-19 127.4 12.2 123 72-204 87-209 (605)
114 1a9n_A U2A', U2A'; complex (nu 99.6 2.1E-15 7.3E-20 109.8 8.1 110 91-205 14-126 (176)
115 3cvr_A Invasion plasmid antige 99.6 5.8E-15 2E-19 125.8 11.8 118 72-205 100-243 (571)
116 1o6v_A Internalin A; bacterial 99.6 9.6E-15 3.3E-19 121.7 12.9 122 73-204 244-365 (466)
117 1o6v_A Internalin A; bacterial 99.6 5.7E-15 2E-19 123.0 11.5 123 72-204 265-387 (466)
118 2ast_B S-phase kinase-associat 99.6 1E-16 3.4E-21 127.9 0.4 58 73-130 94-152 (336)
119 2ast_B S-phase kinase-associat 99.6 4.7E-16 1.6E-20 124.0 3.2 130 72-202 70-205 (336)
120 2ca6_A RAN GTPase-activating p 99.6 3.3E-16 1.1E-20 127.4 2.2 134 72-205 159-316 (386)
121 3bz5_A Internalin-J, INLJ; leu 99.6 4.3E-14 1.5E-18 117.7 13.4 120 72-205 64-183 (457)
122 2ca6_A RAN GTPase-activating p 99.6 3.6E-16 1.2E-20 127.3 0.3 109 96-204 159-286 (386)
123 4ay9_X Follicle-stimulating ho 99.5 2.1E-14 7.3E-19 115.4 10.1 145 59-204 8-166 (350)
124 2ifg_A High affinity nerve gro 99.5 2.8E-14 9.5E-19 114.4 10.7 101 78-181 14-116 (347)
125 3bz5_A Internalin-J, INLJ; leu 99.5 8.9E-14 3.1E-18 115.8 13.5 120 72-204 106-245 (457)
126 1jl5_A Outer protein YOPM; leu 99.5 8.7E-14 3E-18 115.7 13.2 119 72-204 131-249 (454)
127 3g06_A SSPH2 (leucine-rich rep 99.5 1.1E-14 3.6E-19 125.5 7.4 96 74-181 42-154 (622)
128 1jl5_A Outer protein YOPM; leu 99.5 3.8E-15 1.3E-19 124.0 3.9 122 72-204 11-165 (454)
129 1ds9_A Outer arm dynein; leuci 99.5 5.3E-17 1.8E-21 120.6 -6.6 126 73-204 19-152 (198)
130 3goz_A Leucine-rich repeat-con 99.5 2.3E-15 7.8E-20 121.6 2.4 133 73-205 52-209 (362)
131 3g06_A SSPH2 (leucine-rich rep 99.5 1.4E-13 4.8E-18 118.5 13.3 77 120-205 221-297 (622)
132 2ifg_A High affinity nerve gro 99.5 1.1E-13 3.7E-18 111.0 11.0 84 73-157 32-116 (347)
133 3goz_A Leucine-rich repeat-con 99.5 5.4E-15 1.8E-19 119.4 3.4 134 72-205 22-180 (362)
134 1z7x_W Ribonuclease inhibitor; 99.5 1.7E-15 5.9E-20 125.5 -1.6 134 72-205 256-411 (461)
135 1z7x_W Ribonuclease inhibitor; 99.4 5.5E-14 1.9E-18 116.4 0.6 131 73-203 86-238 (461)
136 4ay9_X Follicle-stimulating ho 99.4 2.4E-12 8.2E-17 103.5 9.7 124 76-202 13-138 (350)
137 3un9_A NLR family member X1; l 99.3 1.7E-13 5.7E-18 111.3 0.4 134 72-205 101-252 (372)
138 3un9_A NLR family member X1; l 99.2 5.9E-13 2E-17 108.0 -1.9 134 72-205 72-224 (372)
139 3ogk_B Coronatine-insensitive 99.1 2.5E-12 8.6E-17 109.6 -1.8 133 73-205 379-526 (592)
140 3rw6_A Nuclear RNA export fact 99.1 4.4E-12 1.5E-16 98.1 -0.8 80 117-198 167-257 (267)
141 3ogk_B Coronatine-insensitive 99.0 7.1E-11 2.4E-15 100.7 2.9 64 94-157 162-233 (592)
142 3sb4_A Hypothetical leucine ri 99.0 2.1E-09 7.3E-14 85.4 9.7 84 119-204 225-309 (329)
143 1io0_A Tropomodulin; LRR prote 98.9 1E-10 3.5E-15 85.7 0.1 113 92-204 32-163 (185)
144 2p1m_B Transport inhibitor res 98.8 8.7E-11 3E-15 100.1 -3.5 131 73-204 373-518 (594)
145 2ra8_A Uncharacterized protein 98.8 2.5E-09 8.4E-14 86.4 3.1 131 72-205 172-320 (362)
146 3sb4_A Hypothetical leucine ri 98.8 2.4E-08 8.3E-13 79.3 8.7 103 95-199 225-328 (329)
147 2p1m_B Transport inhibitor res 98.7 1.3E-09 4.5E-14 92.8 0.8 131 72-202 105-245 (594)
148 3rw6_A Nuclear RNA export fact 98.7 1.7E-08 5.6E-13 78.0 5.0 80 93-174 167-257 (267)
149 1io0_A Tropomodulin; LRR prote 98.6 4.8E-09 1.6E-13 76.7 0.8 110 72-181 36-164 (185)
150 2ra8_A Uncharacterized protein 98.5 7.7E-08 2.6E-12 77.6 4.4 131 72-205 139-292 (362)
151 3e4g_A ATP synthase subunit S, 98.3 2.1E-07 7.3E-12 67.2 3.0 92 88-179 53-150 (176)
152 4fdw_A Leucine rich hypothetic 98.3 4.1E-06 1.4E-10 68.4 9.8 87 114-203 265-356 (401)
153 4fdw_A Leucine rich hypothetic 98.3 6.8E-06 2.3E-10 67.1 10.9 125 74-201 159-309 (401)
154 3e4g_A ATP synthase subunit S, 98.3 4E-07 1.4E-11 65.8 2.8 86 72-157 61-153 (176)
155 1pgv_A TMD-1, tropomodulin TMD 97.6 1.2E-05 4.3E-10 59.0 1.2 14 144-157 98-111 (197)
156 4gt6_A Cell surface protein; l 97.6 0.00051 1.8E-08 55.6 10.0 83 115-202 306-388 (394)
157 3rfe_A Platelet glycoprotein I 97.4 0.00032 1.1E-08 47.9 6.0 57 123-181 11-68 (130)
158 4gt6_A Cell surface protein; l 97.4 0.0014 4.7E-08 53.0 10.6 109 90-203 259-368 (394)
159 4fs7_A Uncharacterized protein 97.3 0.0022 7.6E-08 51.8 10.5 84 115-202 292-376 (394)
160 3rfe_A Platelet glycoprotein I 97.3 0.00073 2.5E-08 46.1 6.3 56 76-133 12-68 (130)
161 4h09_A Hypothetical leucine ri 97.3 0.002 6.8E-08 51.6 9.9 105 92-200 236-341 (379)
162 1pgv_A TMD-1, tropomodulin TMD 97.1 0.00028 9.6E-09 51.8 2.8 85 118-202 39-136 (197)
163 4fs7_A Uncharacterized protein 97.0 0.0015 5.1E-08 52.8 6.6 102 91-197 292-393 (394)
164 4h09_A Hypothetical leucine ri 96.9 0.0056 1.9E-07 49.0 9.7 115 73-192 241-356 (379)
165 2lz0_A Uncharacterized protein 56.4 21 0.00072 22.4 4.6 40 113-153 13-52 (100)
166 3ox7_P MH027; urokinase-type p 32.3 11 0.00037 16.3 0.2 9 58-66 6-14 (23)
No 1
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.98 E-value=4.8e-32 Score=215.79 Aligned_cols=177 Identities=28% Similarity=0.482 Sum_probs=164.4
Q ss_pred CCChhhHHHHHHHHhccccCCCCcCCCCCCCCCCCc--ccceeeCCCC--CcEEEEEcCCCCccc--cCCccccCCCCCC
Q 043006 26 KNITTDQSALLAFKAHVVDYRSALANNWAMSSPICN--WIGISCGLPH--QRVTALNHLDMGLGG--TIPSHLGNLLFLM 99 (205)
Q Consensus 26 ~~~~~~~~~l~~~~~~~~~~~~~~~~~w~~~~~~c~--w~gv~c~~~~--~~l~~L~l~~~~l~~--~~p~~l~~l~~L~ 99 (205)
.|.++|+.||++||+.+. ++. .+.+|..+.++|. |.||.|+... ++|+.|+++++.+.+ .+|+.+..+++|+
T Consensus 2 ~c~~~~~~aL~~~k~~~~-~~~-~l~~W~~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~ 79 (313)
T 1ogq_A 2 LCNPQDKQALLQIKKDLG-NPT-TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLN 79 (313)
T ss_dssp CSCHHHHHHHHHHHHHTT-CCG-GGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCS
T ss_pred CCCHHHHHHHHHHHHhcC-Ccc-cccCCCCCCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccChhHhCCCCCC
Confidence 488999999999999996 554 6889988888998 9999998544 789999999999999 8999999999999
Q ss_pred EEEccC-CccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEcccccCCCCCchhccCCCCCCeeecccC
Q 043006 100 SLDLTL-NNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFN 178 (205)
Q Consensus 100 ~L~l~~-n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~ls~n 178 (205)
+|++++ |.+.+.+|..+..+++|++|++++|.+++.+|..+..+++|++|++++|.+++.+|..+..+++|++|++++|
T Consensus 80 ~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N 159 (313)
T 1ogq_A 80 FLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGN 159 (313)
T ss_dssp EEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSS
T ss_pred eeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCC
Confidence 999995 9999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcccCChhhcCCC-CCCEEEccCCCC
Q 043006 179 VIDGSIPSGIRNLS-NLFNLNLGYNNL 204 (205)
Q Consensus 179 ~l~~~~p~~~~~l~-~L~~L~ls~N~l 204 (205)
.+++.+|..+++++ +|++|++++|.+
T Consensus 160 ~l~~~~p~~l~~l~~~L~~L~L~~N~l 186 (313)
T 1ogq_A 160 RISGAIPDSYGSFSKLFTSMTISRNRL 186 (313)
T ss_dssp CCEEECCGGGGCCCTTCCEEECCSSEE
T ss_pred cccCcCCHHHhhhhhcCcEEECcCCee
Confidence 99999999999998 999999999975
No 2
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.96 E-value=4.3e-29 Score=215.91 Aligned_cols=177 Identities=21% Similarity=0.305 Sum_probs=156.0
Q ss_pred CChhhHHHHHHHHhccccCCCCcC-------CCCCCCCCCCcc---cceeeCCCCCcEEEEEcCCCCccccCCccccCCC
Q 043006 27 NITTDQSALLAFKAHVVDYRSALA-------NNWAMSSPICNW---IGISCGLPHQRVTALNHLDMGLGGTIPSHLGNLL 96 (205)
Q Consensus 27 ~~~~~~~~l~~~~~~~~~~~~~~~-------~~w~~~~~~c~w---~gv~c~~~~~~l~~L~l~~~~l~~~~p~~l~~l~ 96 (205)
...+|+.||.++|+++.++.|... .+|+.+.++|.| .||+|+.. ++|+.|+++++++.|.+|+.+..++
T Consensus 27 ~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~~~~c~w~~~~GV~C~~~-~~V~~L~L~~~~l~g~lp~~l~~L~ 105 (636)
T 4eco_A 27 EYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNSN-GRVTGLSLEGFGASGRVPDAIGQLT 105 (636)
T ss_dssp HHHHHHHHHHHHHHHTTGGGCCCCC------CCCCCSSCGGGTTCCTTEEECTT-CCEEEEECTTSCCEEEECGGGGGCT
T ss_pred hHHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCCCCcccccCCCCeEEcCC-CCEEEEEecCcccCCcCChHHhcCc
Confidence 345799999999999987777643 389988999999 99999854 8999999999999999999999999
Q ss_pred CCCEEEccCCc---------------------------------------------------------------------
Q 043006 97 FLMSLDLTLNN--------------------------------------------------------------------- 107 (205)
Q Consensus 97 ~L~~L~l~~n~--------------------------------------------------------------------- 107 (205)
+|++|++++|.
T Consensus 106 ~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~ 185 (636)
T 4eco_A 106 ELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKD 185 (636)
T ss_dssp TCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCCT
T ss_pred cceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCccccccccccccchhh
Confidence 99999999884
Q ss_pred ---------cccccccccCCCCCCcEEEcccCcCCCC-----------------CCcccc--CCCCCCEEEcccccCCCC
Q 043006 108 ---------FHGHLAHELGQLRRLRFISFTFNKLSGS-----------------IPTWIG--VLSKLRILSLCNNSLTGL 159 (205)
Q Consensus 108 ---------~~~~~p~~~~~l~~L~~L~l~~n~l~~~-----------------~p~~~~--~l~~L~~l~l~~n~l~~~ 159 (205)
+++ +|..++.+++|++|++++|.+++. +|+.++ ++++|++|++++|.+.+.
T Consensus 186 l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~ 264 (636)
T 4eco_A 186 TQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTK 264 (636)
T ss_dssp TTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSS
T ss_pred hhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCcc
Confidence 344 788899999999999999999975 999988 999999999999999999
Q ss_pred CchhccCCCCCCeeecccCc-Ccc-cCChhhcCC------CCCCEEEccCCCCC
Q 043006 160 IPNSLFNLSKLEMLDAMFNV-IDG-SIPSGIRNL------SNLFNLNLGYNNLQ 205 (205)
Q Consensus 160 ~p~~~~~l~~L~~L~ls~n~-l~~-~~p~~~~~l------~~L~~L~ls~N~l~ 205 (205)
+|..+..+++|++|++++|+ ++| .+|..++++ ++|++|++++|.++
T Consensus 265 ~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~ 318 (636)
T 4eco_A 265 LPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK 318 (636)
T ss_dssp CCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS
T ss_pred ChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC
Confidence 99999999999999999998 888 788777665 78888888888763
No 3
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.95 E-value=2.6e-27 Score=208.59 Aligned_cols=173 Identities=25% Similarity=0.354 Sum_probs=132.1
Q ss_pred CChhhHHHHHHHHhccccCCCCcCCCCCCCCCCCcccceeeCCCCCcEEEEEcCCCCcccc---CC--------------
Q 043006 27 NITTDQSALLAFKAHVVDYRSALANNWAMSSPICNWIGISCGLPHQRVTALNHLDMGLGGT---IP-------------- 89 (205)
Q Consensus 27 ~~~~~~~~l~~~~~~~~~~~~~~~~~w~~~~~~c~w~gv~c~~~~~~l~~L~l~~~~l~~~---~p-------------- 89 (205)
..++|+.||++||+.+. ++. .+.+|..+.+||.|.||+|+ .++|+.|+++++.+.|. +|
T Consensus 9 ~~~~~~~all~~k~~~~-~~~-~l~~W~~~~~~C~w~gv~C~--~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~ 84 (768)
T 3rgz_A 9 SLYREIHQLISFKDVLP-DKN-LLPDWSSNKNPCTFDGVTCR--DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFL 84 (768)
T ss_dssp CHHHHHHHHHHHHTTCS-CTT-SSTTCCTTSCGGGSTTEEEE--TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEEC
T ss_pred CCHHHHHHHHHHHhhCC-Ccc-cccCCCCCCCCcCCcceEEC--CCcEEEEECCCCCcCCccCccChhHhccCcccccCC
Confidence 45789999999999997 666 78999988899999999998 48999999999998876 43
Q ss_pred ---------ccccCCCCCCEEEccCCcccccccc--ccCCCCCCcEEEcccCcCCCCCCccc-cCCCCCCEEEcccccCC
Q 043006 90 ---------SHLGNLLFLMSLDLTLNNFHGHLAH--ELGQLRRLRFISFTFNKLSGSIPTWI-GVLSKLRILSLCNNSLT 157 (205)
Q Consensus 90 ---------~~l~~l~~L~~L~l~~n~~~~~~p~--~~~~l~~L~~L~l~~n~l~~~~p~~~-~~l~~L~~l~l~~n~l~ 157 (205)
..+..+++|++|++++|.++|.+|. .++.+++|++|++++|.+.+..|..+ .++++|++|++++|.++
T Consensus 85 ~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~ 164 (768)
T 3rgz_A 85 SNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSIS 164 (768)
T ss_dssp TTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCE
T ss_pred cCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccC
Confidence 4677788888888888888887877 78888888888888888877777654 67777777777777777
Q ss_pred CCCchh---cc----------------------CCCCCCeeecccCcCcccCChhhcCCCCCCEEEccCCCC
Q 043006 158 GLIPNS---LF----------------------NLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNL 204 (205)
Q Consensus 158 ~~~p~~---~~----------------------~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l 204 (205)
+..|.. +. .+++|++|++++|.+++.+|. ++++++|++|++++|.+
T Consensus 165 ~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l 235 (768)
T 3rgz_A 165 GANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKL 235 (768)
T ss_dssp EETHHHHHHTTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCC
T ss_pred CcCChhhhhhccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcC
Confidence 655544 33 445555555555555555554 66666666666666655
No 4
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.94 E-value=2.5e-27 Score=210.19 Aligned_cols=172 Identities=26% Similarity=0.383 Sum_probs=145.7
Q ss_pred CChhhHHHHHHHHhccccCCCCcCCCCCCCC-----CC--Ccc------------cceeeCCCCCcEEEEEcCCCCcccc
Q 043006 27 NITTDQSALLAFKAHVVDYRSALANNWAMSS-----PI--CNW------------IGISCGLPHQRVTALNHLDMGLGGT 87 (205)
Q Consensus 27 ~~~~~~~~l~~~~~~~~~~~~~~~~~w~~~~-----~~--c~w------------~gv~c~~~~~~l~~L~l~~~~l~~~ 87 (205)
...+|+.||++||+++.++ +|..+. ++ |.| .||.|+. .++|+.|+++++++.|.
T Consensus 266 ~~~~d~~ALl~~k~~l~~~------~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls~~~L~G~ 338 (876)
T 4ecn_A 266 EYIKDYKALKAIWEALDGK------NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLSLAGFGAKGR 338 (876)
T ss_dssp HHHHHHHHHHHHHHHTTGG------GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEECTTTCCEEE
T ss_pred cchHHHHHHHHHHHHcCCC------CCCcCCCcccccCCccccccccccccccCcCceEecC-CCCEEEEECccCCCCCc
Confidence 4568999999999999744 454332 44 999 9999985 48999999999999999
Q ss_pred CCccccCCCCCCEEEc-cCCccccc-------------------------------------------------------
Q 043006 88 IPSHLGNLLFLMSLDL-TLNNFHGH------------------------------------------------------- 111 (205)
Q Consensus 88 ~p~~l~~l~~L~~L~l-~~n~~~~~------------------------------------------------------- 111 (205)
+|+.+.++++|++|++ ++|.++|.
T Consensus 339 ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~i~ 418 (876)
T 4ecn_A 339 VPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIK 418 (876)
T ss_dssp ECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCCCC
T ss_pred CchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCccccccc
Confidence 9999999999999999 77765443
Q ss_pred ---------------------cccccCCCCCCcEEEcccCcCCC-----------------CCCcccc--CCCCCCEEEc
Q 043006 112 ---------------------LAHELGQLRRLRFISFTFNKLSG-----------------SIPTWIG--VLSKLRILSL 151 (205)
Q Consensus 112 ---------------------~p~~~~~l~~L~~L~l~~n~l~~-----------------~~p~~~~--~l~~L~~l~l 151 (205)
+|..++.+++|++|++++|.+++ .+|+.++ ++++|++|++
T Consensus 419 ~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~L 498 (876)
T 4ecn_A 419 KDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVEL 498 (876)
T ss_dssp CCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEE
T ss_pred cccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEEC
Confidence 78888999999999999999997 3898887 9999999999
Q ss_pred ccccCCCCCchhccCCCCCCeeecccCc-Ccc-cCChhhcCCC-------CCCEEEccCCCCC
Q 043006 152 CNNSLTGLIPNSLFNLSKLEMLDAMFNV-IDG-SIPSGIRNLS-------NLFNLNLGYNNLQ 205 (205)
Q Consensus 152 ~~n~l~~~~p~~~~~l~~L~~L~ls~n~-l~~-~~p~~~~~l~-------~L~~L~ls~N~l~ 205 (205)
++|.+.+.+|..+..+++|+.|++++|+ ++| .+|..+++++ +|++|++++|.++
T Consensus 499 s~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~ 561 (876)
T 4ecn_A 499 YNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE 561 (876)
T ss_dssp ESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC
T ss_pred cCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC
Confidence 9999999999999999999999999998 887 6777665544 7788888777763
No 5
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.94 E-value=6.3e-27 Score=187.41 Aligned_cols=175 Identities=22% Similarity=0.302 Sum_probs=139.6
Q ss_pred CCChhhHHHHHHHHhccccCCCCcCCCC----CCCCCCCcccceeeC--------CCCCcEEEEEcCCCCccccCCcccc
Q 043006 26 KNITTDQSALLAFKAHVVDYRSALANNW----AMSSPICNWIGISCG--------LPHQRVTALNHLDMGLGGTIPSHLG 93 (205)
Q Consensus 26 ~~~~~~~~~l~~~~~~~~~~~~~~~~~w----~~~~~~c~w~gv~c~--------~~~~~l~~L~l~~~~l~~~~p~~l~ 93 (205)
....+|+.+|++||..+..++......| ....++|.|.|+.|. ....+++.|+++++.++ .+|+.+.
T Consensus 23 ~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp~~l~ 101 (328)
T 4fcg_A 23 TALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAF 101 (328)
T ss_dssp CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCCSCGG
T ss_pred ccCchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hcChhhh
Confidence 4566899999999998876776667788 455689999999994 12367889999999987 7888888
Q ss_pred CCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEcccccCCCCCchhccC-------
Q 043006 94 NLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSLCNNSLTGLIPNSLFN------- 166 (205)
Q Consensus 94 ~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~~~~------- 166 (205)
.+++|++|++++|.++ .+|..+..+++|++|++++|.++ .+|..+..+++|++|++++|++.+.+|..+..
T Consensus 102 ~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~ 179 (328)
T 4fcg_A 102 RLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEH 179 (328)
T ss_dssp GGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCE
T ss_pred hCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhh
Confidence 8889999999999888 78888888888888888888888 77888888888888888888777777766543
Q ss_pred --CCCCCeeecccCcCcccCChhhcCCCCCCEEEccCCCC
Q 043006 167 --LSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNL 204 (205)
Q Consensus 167 --l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l 204 (205)
+++|++|++++|.++ .+|..++++++|++|++++|.+
T Consensus 180 ~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l 218 (328)
T 4fcg_A 180 QGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPL 218 (328)
T ss_dssp EESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCC
T ss_pred ccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCC
Confidence 777777777777776 6777677777777777777765
No 6
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.91 E-value=2.3e-23 Score=158.60 Aligned_cols=155 Identities=21% Similarity=0.193 Sum_probs=134.7
Q ss_pred CCCCCCCCCCCcccceeeCCCC---------CcEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCC
Q 043006 50 ANNWAMSSPICNWIGISCGLPH---------QRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLR 120 (205)
Q Consensus 50 ~~~w~~~~~~c~w~gv~c~~~~---------~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~ 120 (205)
...|......|+|.+|.|.... ..++.|++++|.+.+..|..+..+++|++|++++|.++...+..|..++
T Consensus 9 ~~~~~~~~~~Cs~~~v~c~~~~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~ 88 (229)
T 3e6j_A 9 HSAACPSQCSCSGTTVDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLT 88 (229)
T ss_dssp --CCCCTTCEEETTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred hhccCCCCCEEeCCEeEccCCCcCccCCCCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCC
Confidence 3456667789999999997422 5689999999999988888999999999999999999855556678999
Q ss_pred CCcEEEcccCcCCCCCCccccCCCCCCEEEcccccCCCCCchhccCCCCCCeeecccCcCcccCChhhcCCCCCCEEEcc
Q 043006 121 RLRFISFTFNKLSGSIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLG 200 (205)
Q Consensus 121 ~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls 200 (205)
+|++|++++|.+++..+..+..+++|++|++++|.++ .+|..+..+++|++|++++|.+++..+..+..+++|+.|+++
T Consensus 89 ~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~ 167 (229)
T 3e6j_A 89 QLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLF 167 (229)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEee
Confidence 9999999999999655666889999999999999999 789899999999999999999995555668899999999999
Q ss_pred CCCCC
Q 043006 201 YNNLQ 205 (205)
Q Consensus 201 ~N~l~ 205 (205)
+|+++
T Consensus 168 ~N~~~ 172 (229)
T 3e6j_A 168 GNPWD 172 (229)
T ss_dssp TSCBC
T ss_pred CCCcc
Confidence 99864
No 7
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.89 E-value=1.6e-22 Score=153.06 Aligned_cols=149 Identities=17% Similarity=0.190 Sum_probs=131.3
Q ss_pred CCCCCcccceeeCCCC---------CcEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEE
Q 043006 56 SSPICNWIGISCGLPH---------QRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFIS 126 (205)
Q Consensus 56 ~~~~c~w~gv~c~~~~---------~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ 126 (205)
....|.|..+.|.... ..++.|++++|.+.+..+..+..+++|++|++++|.+++..|..|..+++|++|+
T Consensus 7 ~~C~C~~~~v~c~~~~l~~iP~~l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~ 86 (220)
T 2v9t_B 7 AACTCSNNIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLV 86 (220)
T ss_dssp TTSEEETTEEECTTSCCSSCCSSCCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEE
T ss_pred CCCEECCCEEEcCCCCcCcCCCccCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEE
Confidence 3455788888886422 4689999999999977777899999999999999999987799999999999999
Q ss_pred cccCcCCCCCCccccCCCCCCEEEcccccCCCCCchhccCCCCCCeeecccCcCcccCChhhcCCCCCCEEEccCCCC
Q 043006 127 FTFNKLSGSIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNL 204 (205)
Q Consensus 127 l~~n~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l 204 (205)
+++|.++...+..+..+++|++|++++|.+++..|..|..+++|++|++++|.+++..+..+..+++|+.|++++|++
T Consensus 87 Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 87 LYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred CCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence 999999944445578999999999999999988889999999999999999999966666789999999999999986
No 8
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.89 E-value=2.6e-22 Score=150.34 Aligned_cols=149 Identities=19% Similarity=0.176 Sum_probs=127.8
Q ss_pred CCCCcccceeeCCCC---------CcEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEc
Q 043006 57 SPICNWIGISCGLPH---------QRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISF 127 (205)
Q Consensus 57 ~~~c~w~gv~c~~~~---------~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l 127 (205)
...|.|.++.|.... .+++.|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus 4 ~C~C~~~~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 83 (208)
T 2o6s_A 4 RCSCSGTTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNL 83 (208)
T ss_dssp TCEEETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCEECCCEEEecCCCccCCCCCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEEC
Confidence 456789999996422 46899999999999766667889999999999999999655556789999999999
Q ss_pred ccCcCCCCCCccccCCCCCCEEEcccccCCCCCchhccCCCCCCeeecccCcCcccCChhhcCCCCCCEEEccCCCCC
Q 043006 128 TFNKLSGSIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNLQ 205 (205)
Q Consensus 128 ~~n~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~ 205 (205)
++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+.++++|++|++++|+++
T Consensus 84 s~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 161 (208)
T 2o6s_A 84 STNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD 161 (208)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred CCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee
Confidence 999999555566889999999999999999776677889999999999999999555556889999999999999763
No 9
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.89 E-value=2e-22 Score=152.54 Aligned_cols=148 Identities=20% Similarity=0.188 Sum_probs=130.9
Q ss_pred CCCCcccceeeCCCC---------CcEEEEEcCCCCccccCC-ccccCCCCCCEEEccCCccccccccccCCCCCCcEEE
Q 043006 57 SPICNWIGISCGLPH---------QRVTALNHLDMGLGGTIP-SHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFIS 126 (205)
Q Consensus 57 ~~~c~w~gv~c~~~~---------~~l~~L~l~~~~l~~~~p-~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ 126 (205)
...|.|..+.|.... ..++.|++++|.+++..| ..+..+++|++|++++|.+++..+..|..+++|++|+
T Consensus 8 ~C~C~~~~l~~s~n~l~~iP~~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~ 87 (220)
T 2v70_A 8 KCRCEGTTVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEIL 87 (220)
T ss_dssp TCEEETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred CCEECCCEeEeCCCCcccCccCCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEE
Confidence 345678888886421 357899999999997755 4578999999999999999977777899999999999
Q ss_pred cccCcCCCCCCccccCCCCCCEEEcccccCCCCCchhccCCCCCCeeecccCcCcccCChhhcCCCCCCEEEccCCCC
Q 043006 127 FTFNKLSGSIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNL 204 (205)
Q Consensus 127 l~~n~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l 204 (205)
+++|.+++..|..+..+++|++|++++|.+++..|..+..+++|++|++++|.+++..|..+..+++|+.|++++|++
T Consensus 88 Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 165 (220)
T 2v70_A 88 LTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPF 165 (220)
T ss_dssp CCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCE
T ss_pred CCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCC
Confidence 999999977777799999999999999999988899999999999999999999977788999999999999999986
No 10
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.88 E-value=6.6e-22 Score=152.38 Aligned_cols=132 Identities=21% Similarity=0.168 Sum_probs=63.9
Q ss_pred cEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEcc
Q 043006 73 RVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSLC 152 (205)
Q Consensus 73 ~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~ 152 (205)
+++.|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|+++
T Consensus 60 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls 139 (251)
T 3m19_A 60 KLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLN 139 (251)
T ss_dssp TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred cCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECc
Confidence 34444444444444334444444444444444444443333334444555555555555543222334445555555555
Q ss_pred cccCCCCCchhccCCCCCCeeecccCcCcccCChhhcCCCCCCEEEccCCCC
Q 043006 153 NNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNL 204 (205)
Q Consensus 153 ~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l 204 (205)
+|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|++
T Consensus 140 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 191 (251)
T 3m19_A 140 TNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQF 191 (251)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCB
T ss_pred CCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCce
Confidence 5555544333455555555555555555533333455555555555555544
No 11
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.86 E-value=1.2e-21 Score=172.60 Aligned_cols=133 Identities=34% Similarity=0.564 Sum_probs=108.5
Q ss_pred CcEEEEEcCCCCccccCCccccCCCCCCEEEccCCcccccccccc-----------------------------------
Q 043006 72 QRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHEL----------------------------------- 116 (205)
Q Consensus 72 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~----------------------------------- 116 (205)
.+++.|++++|.+.|.+|..+..+++|++|++++|.++|.+|..+
T Consensus 514 ~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 593 (768)
T 3rgz_A 514 ENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNL 593 (768)
T ss_dssp TTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEE
T ss_pred CCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccc
Confidence 457777777777777777777777778888887777776665432
Q ss_pred -----------------------------------CCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEcccccCCCCCc
Q 043006 117 -----------------------------------GQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSLCNNSLTGLIP 161 (205)
Q Consensus 117 -----------------------------------~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p 161 (205)
..+++|++|++++|+++|.+|..++.+++|+.|++++|+++|.+|
T Consensus 594 ~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip 673 (768)
T 3rgz_A 594 LEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIP 673 (768)
T ss_dssp EECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCC
T ss_pred cccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCC
Confidence 234667888888888888888888888889999999999988888
Q ss_pred hhccCCCCCCeeecccCcCcccCChhhcCCCCCCEEEccCCCC
Q 043006 162 NSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNL 204 (205)
Q Consensus 162 ~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l 204 (205)
..++.+++|+.||+++|+++|.+|..++++++|++||+++|++
T Consensus 674 ~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l 716 (768)
T 3rgz_A 674 DEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNL 716 (768)
T ss_dssp GGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEE
T ss_pred hHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcc
Confidence 8888888999999999999888898888888899999998875
No 12
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.86 E-value=6.2e-21 Score=148.43 Aligned_cols=132 Identities=25% Similarity=0.187 Sum_probs=80.0
Q ss_pred cEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEcc
Q 043006 73 RVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSLC 152 (205)
Q Consensus 73 ~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~ 152 (205)
.++.|++++|.+.+..+..+..+++|++|++++|.++...+..|..+++|++|++++|.+++..+..+..+++|++|+++
T Consensus 38 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 117 (270)
T 2o6q_A 38 DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLD 117 (270)
T ss_dssp TCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECC
T ss_pred CCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECC
Confidence 46777888877775555567777777777777777764333345666777777777777664333445566666666666
Q ss_pred cccCCCCCchhccCCCCCCeeecccCcCcccCChhhcCCCCCCEEEccCCCC
Q 043006 153 NNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNL 204 (205)
Q Consensus 153 ~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l 204 (205)
+|.+++..|..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+
T Consensus 118 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l 169 (270)
T 2o6q_A 118 RNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQL 169 (270)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcC
Confidence 6666655445555555555555555555532222344555555555555543
No 13
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.85 E-value=2.6e-20 Score=143.44 Aligned_cols=134 Identities=25% Similarity=0.242 Sum_probs=121.5
Q ss_pred CcEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEc
Q 043006 72 QRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSL 151 (205)
Q Consensus 72 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l 151 (205)
..++.|++++|.+.+..+..+..+++|++|++++|.+++..|..+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus 35 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 114 (251)
T 3m19_A 35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYL 114 (251)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEc
Confidence 56899999999999888888999999999999999999877778999999999999999999666677899999999999
Q ss_pred ccccCCCCCchhccCCCCCCeeecccCcCcccCChhhcCCCCCCEEEccCCCCC
Q 043006 152 CNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNLQ 205 (205)
Q Consensus 152 ~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~ 205 (205)
++|.+++..+..+..+++|++|++++|.+++..+..++.+++|++|++++|+++
T Consensus 115 ~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 168 (251)
T 3m19_A 115 GGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ 168 (251)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred CCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCC
Confidence 999999776677889999999999999999555557899999999999999874
No 14
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.84 E-value=1.8e-20 Score=160.68 Aligned_cols=134 Identities=22% Similarity=0.166 Sum_probs=121.1
Q ss_pred CcEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEc
Q 043006 72 QRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSL 151 (205)
Q Consensus 72 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l 151 (205)
..++.|++++|.+++..+..|.++++|++|++++|.+++..|..|..+++|++|++++|++++..+..|.++++|++|++
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L 131 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 131 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence 46899999999999777788999999999999999999766778999999999999999999555567999999999999
Q ss_pred ccccCCCCCchhccCCCCCCeeecccCcCcc-cCChhhcCCCCCCEEEccCCCCC
Q 043006 152 CNNSLTGLIPNSLFNLSKLEMLDAMFNVIDG-SIPSGIRNLSNLFNLNLGYNNLQ 205 (205)
Q Consensus 152 ~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~-~~p~~~~~l~~L~~L~ls~N~l~ 205 (205)
++|++++..+..|+.+++|++|++++|.+++ .+|..++.+++|++|++++|+|+
T Consensus 132 s~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~ 186 (635)
T 4g8a_A 132 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 186 (635)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred CCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccc
Confidence 9999997766779999999999999999974 46788899999999999999874
No 15
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.84 E-value=1.8e-20 Score=155.39 Aligned_cols=149 Identities=19% Similarity=0.231 Sum_probs=128.2
Q ss_pred CCCCcccc--eeeCCCC--------CcEEEEEcCCCCccccCCccccCCCCCCEEEccCCcccccc-ccccCCCCCCcEE
Q 043006 57 SPICNWIG--ISCGLPH--------QRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHL-AHELGQLRRLRFI 125 (205)
Q Consensus 57 ~~~c~w~g--v~c~~~~--------~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~-p~~~~~l~~L~~L 125 (205)
...|.|.+ +.|.... .++++|++++|.+++..|..+..+++|++|++++|.+.+.+ +..|..+++|++|
T Consensus 5 ~~~c~~~~~~~~c~~~~l~~lp~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L 84 (455)
T 3v47_A 5 TSECSVIGYNAICINRGLHQVPELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIIL 84 (455)
T ss_dssp --CCEEETTEEECCSSCCSSCCCCCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEE
T ss_pred cceeEEEccccCcCCCCcccCCCCCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEE
Confidence 34555555 6665322 57999999999999888999999999999999999997666 5568999999999
Q ss_pred EcccCcCCCCCCccccCCCCCCEEEcccccCCCCCchh--ccCCCCCCeeecccCcCcccCChh-hcCCCCCCEEEccCC
Q 043006 126 SFTFNKLSGSIPTWIGVLSKLRILSLCNNSLTGLIPNS--LFNLSKLEMLDAMFNVIDGSIPSG-IRNLSNLFNLNLGYN 202 (205)
Q Consensus 126 ~l~~n~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~--~~~l~~L~~L~ls~n~l~~~~p~~-~~~l~~L~~L~ls~N 202 (205)
++++|.+++..|..+.++++|++|++++|.+++.+|.. +..+++|++|++++|.+++..|.. ++++++|++|++++|
T Consensus 85 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n 164 (455)
T 3v47_A 85 KLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFN 164 (455)
T ss_dssp ECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTC
T ss_pred eCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCC
Confidence 99999999778999999999999999999999866655 889999999999999999777876 789999999999999
Q ss_pred CCC
Q 043006 203 NLQ 205 (205)
Q Consensus 203 ~l~ 205 (205)
.++
T Consensus 165 ~l~ 167 (455)
T 3v47_A 165 KVK 167 (455)
T ss_dssp CBS
T ss_pred ccc
Confidence 863
No 16
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.84 E-value=4.1e-21 Score=152.61 Aligned_cols=132 Identities=30% Similarity=0.407 Sum_probs=99.4
Q ss_pred CcEEEEEcCC-CCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEE
Q 043006 72 QRVTALNHLD-MGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILS 150 (205)
Q Consensus 72 ~~l~~L~l~~-~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~ 150 (205)
..++.|++++ |.+.+.+|..+..+++|++|++++|.+++.+|..+..+++|++|++++|.+++.+|..+..+++|++|+
T Consensus 76 ~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 155 (313)
T 1ogq_A 76 PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGIT 155 (313)
T ss_dssp TTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEE
T ss_pred CCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEE
Confidence 5677888884 778777888888888888888888888777777777788888888888888777777777788888888
Q ss_pred cccccCCCCCchhccCCC-CCCeeecccCcCcccCChhhcCCCCCCEEEccCCCC
Q 043006 151 LCNNSLTGLIPNSLFNLS-KLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNL 204 (205)
Q Consensus 151 l~~n~l~~~~p~~~~~l~-~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l 204 (205)
+++|.+++.+|..+..++ +|++|++++|.+++.+|..++.++ |++|++++|.+
T Consensus 156 L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l 209 (313)
T 1ogq_A 156 FDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNML 209 (313)
T ss_dssp CCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEE
T ss_pred CcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcc
Confidence 888887777777777776 777777777777766666665554 66666655543
No 17
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.84 E-value=7.7e-20 Score=142.41 Aligned_cols=133 Identities=20% Similarity=0.160 Sum_probs=108.4
Q ss_pred CcEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEc
Q 043006 72 QRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSL 151 (205)
Q Consensus 72 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l 151 (205)
.+++.|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus 85 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 164 (272)
T 3rfs_A 85 TNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDL 164 (272)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEEC
Confidence 67888888888888666666788888888888888888666666788888888888888888555566788888888999
Q ss_pred ccccCCCCCchhccCCCCCCeeecccCcCcccCChhhcCCCCCCEEEccCCCC
Q 043006 152 CNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNL 204 (205)
Q Consensus 152 ~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l 204 (205)
++|++++..+..+..+++|++|++++|.+++..|..++++++|++|++++|++
T Consensus 165 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (272)
T 3rfs_A 165 SYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW 217 (272)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCc
Confidence 88888877666678888899999999988866666678888899999988875
No 18
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.83 E-value=3.1e-20 Score=137.62 Aligned_cols=128 Identities=24% Similarity=0.316 Sum_probs=106.9
Q ss_pred EEEEcCCCCccccCCccccCCCCCCEEEccCCcccccccc-ccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEccc
Q 043006 75 TALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAH-ELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSLCN 153 (205)
Q Consensus 75 ~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~-~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~ 153 (205)
+.+++++++++ .+|..+.. .+++|++++|.+++..+. .+..+++|++|++++|.+++..|..+..+++|++|++++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 35667777774 67766544 889999999999855443 378899999999999999977788899999999999999
Q ss_pred ccCCCCCchhccCCCCCCeeecccCcCcccCChhhcCCCCCCEEEccCCCCC
Q 043006 154 NSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNLQ 205 (205)
Q Consensus 154 n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~ 205 (205)
|++++..|..+..+++|++|++++|++++..|..+..+++|++|++++|+++
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 9999877777888999999999999999888888889999999999999864
No 19
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.83 E-value=8.7e-20 Score=156.40 Aligned_cols=134 Identities=22% Similarity=0.213 Sum_probs=123.5
Q ss_pred CcEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEc
Q 043006 72 QRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSL 151 (205)
Q Consensus 72 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l 151 (205)
.+++.|++++|.+++..+..+.++++|++|++++|.+++..|..|..+++|++|++++|.+++..|..+.++++|++|++
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 111 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVA 111 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEEC
T ss_pred CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEc
Confidence 67999999999999888889999999999999999999777888999999999999999999777999999999999999
Q ss_pred ccccCCCCCchhccCCCCCCeeecccCcCcc-cCChhhcCCCCCCEEEccCCCCC
Q 043006 152 CNNSLTGLIPNSLFNLSKLEMLDAMFNVIDG-SIPSGIRNLSNLFNLNLGYNNLQ 205 (205)
Q Consensus 152 ~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~-~~p~~~~~l~~L~~L~ls~N~l~ 205 (205)
++|.+++..|..+..+++|++|++++|.+.+ .+|..++++++|++|++++|.++
T Consensus 112 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~ 166 (606)
T 3vq2_A 112 VETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQ 166 (606)
T ss_dssp TTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCC
T ss_pred cCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcce
Confidence 9999997777889999999999999999985 67999999999999999999874
No 20
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.83 E-value=6.6e-20 Score=148.35 Aligned_cols=148 Identities=22% Similarity=0.249 Sum_probs=125.5
Q ss_pred CCCCcccceeeCCCC---------CcEEEEEcCCCCccccCCcccc-CCCCCCEEEccCCccccccccccCCCCCCcEEE
Q 043006 57 SPICNWIGISCGLPH---------QRVTALNHLDMGLGGTIPSHLG-NLLFLMSLDLTLNNFHGHLAHELGQLRRLRFIS 126 (205)
Q Consensus 57 ~~~c~w~gv~c~~~~---------~~l~~L~l~~~~l~~~~p~~l~-~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ 126 (205)
...|.+..+.|.... ..++.|++++|.+++..+..+. .+++|++|++++|.+++..+..|..+++|++|+
T Consensus 15 ~C~C~~~~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~ 94 (361)
T 2xot_A 15 NCLCASNILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLD 94 (361)
T ss_dssp TCEEETTEEECCSSCCSSCCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred CCEECCCEEEeCCCCcCccCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEE
Confidence 345667777775321 4578999999999977777777 899999999999999977677899999999999
Q ss_pred cccCcCCCCCCccccCCCCCCEEEcccccCCCCCchhccCCCCCCeeecccCcCcccCChhh----cCCCCCCEEEccCC
Q 043006 127 FTFNKLSGSIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGI----RNLSNLFNLNLGYN 202 (205)
Q Consensus 127 l~~n~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~----~~l~~L~~L~ls~N 202 (205)
+++|.+++..+..+..+++|++|++++|.+++..|..|..+++|+.|++++|.++ .+|..+ ..+++|+.|++++|
T Consensus 95 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~~~~l~~L~~L~L~~N 173 (361)
T 2xot_A 95 LSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSN 173 (361)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-SCCGGGTC----CTTCCEEECCSS
T ss_pred CCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCC-eeCHHHhcCcccCCcCCEEECCCC
Confidence 9999999666667899999999999999999887888999999999999999998 567654 57899999999999
Q ss_pred CCC
Q 043006 203 NLQ 205 (205)
Q Consensus 203 ~l~ 205 (205)
+|+
T Consensus 174 ~l~ 176 (361)
T 2xot_A 174 KLK 176 (361)
T ss_dssp CCC
T ss_pred CCC
Confidence 874
No 21
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.83 E-value=2.4e-20 Score=150.30 Aligned_cols=133 Identities=23% Similarity=0.244 Sum_probs=90.5
Q ss_pred CcEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEc
Q 043006 72 QRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSL 151 (205)
Q Consensus 72 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l 151 (205)
.+++.|++++|.+++..+..+..+++|++|++++|.+++..|..+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus 52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 131 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNL 131 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEEC
T ss_pred ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEEC
Confidence 36777888888777655556777778888888888777655666777777777777777777333333677777777777
Q ss_pred ccccCCCCCc-hhccCCCCCCeeecccCc-CcccCChhhcCCCCCCEEEccCCCC
Q 043006 152 CNNSLTGLIP-NSLFNLSKLEMLDAMFNV-IDGSIPSGIRNLSNLFNLNLGYNNL 204 (205)
Q Consensus 152 ~~n~l~~~~p-~~~~~l~~L~~L~ls~n~-l~~~~p~~~~~l~~L~~L~ls~N~l 204 (205)
++|++++..+ ..+..+++|++|++++|. +.+..|..++++++|++|++++|.+
T Consensus 132 ~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l 186 (353)
T 2z80_A 132 LGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDL 186 (353)
T ss_dssp TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTC
T ss_pred CCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCc
Confidence 7777773322 256667777777777763 4433445566666677777766654
No 22
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.82 E-value=2e-19 Score=140.79 Aligned_cols=133 Identities=24% Similarity=0.186 Sum_probs=74.2
Q ss_pred CcEEEEEcCCCCccccCCccccCCCCCCEEEccCCc-cccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEE
Q 043006 72 QRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNN-FHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILS 150 (205)
Q Consensus 72 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~-~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~ 150 (205)
.+++.|++++|.+++..|..+..+++|++|++++|. ++...|..+..+++|++|++++|.+++..|..+..+++|++|+
T Consensus 56 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 135 (285)
T 1ozn_A 56 RNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLY 135 (285)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEE
Confidence 345555555555555445555555555555555554 4433344555555666666666655544455555566666666
Q ss_pred cccccCCCCCchhccCCCCCCeeecccCcCcccCChhhcCCCCCCEEEccCCCC
Q 043006 151 LCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNL 204 (205)
Q Consensus 151 l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l 204 (205)
+++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+
T Consensus 136 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 189 (285)
T 1ozn_A 136 LQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRV 189 (285)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred CCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcc
Confidence 666666544444455566666666666666533333455566666666666654
No 23
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.82 E-value=4.1e-20 Score=156.67 Aligned_cols=146 Identities=21% Similarity=0.202 Sum_probs=122.7
Q ss_pred CCcccceeeCCC-----------CCcEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEc
Q 043006 59 ICNWIGISCGLP-----------HQRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISF 127 (205)
Q Consensus 59 ~c~w~gv~c~~~-----------~~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l 127 (205)
.|.|.|+ |+.. ...+++|++++|.+++..|..+..+++|++|++++|.+++..|..|..+++|++|++
T Consensus 3 ~C~~~~~-c~~~~~~l~~ip~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L 81 (549)
T 2z81_A 3 SCDASGV-CDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDL 81 (549)
T ss_dssp EECTTSE-EECTTSCCSSCCSCCCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred cCCCCce-EECCCCccccccccCCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEEC
Confidence 4777776 6422 147899999999999888888999999999999999999777788999999999999
Q ss_pred ccCcCCCCCCccccCCCCCCEEEcccccCCC-CCchhccCCCCCCeeecccCcCcccCC-hhhcCCCCCCEEEccCCCCC
Q 043006 128 TFNKLSGSIPTWIGVLSKLRILSLCNNSLTG-LIPNSLFNLSKLEMLDAMFNVIDGSIP-SGIRNLSNLFNLNLGYNNLQ 205 (205)
Q Consensus 128 ~~n~l~~~~p~~~~~l~~L~~l~l~~n~l~~-~~p~~~~~l~~L~~L~ls~n~l~~~~p-~~~~~l~~L~~L~ls~N~l~ 205 (205)
++|.+++..|..++.+++|++|++++|.+++ ..|..+..+++|++|++++|.+.+.+| ..++++++|++|++++|.++
T Consensus 82 s~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~ 161 (549)
T 2z81_A 82 SDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLR 161 (549)
T ss_dssp TTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC
T ss_pred CCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCccc
Confidence 9999996666679999999999999999986 456778889999999999998555665 46888888999999888763
No 24
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.82 E-value=5.7e-20 Score=146.95 Aligned_cols=130 Identities=20% Similarity=0.139 Sum_probs=67.3
Q ss_pred CcEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccc--------------------------------cCCC
Q 043006 72 QRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHE--------------------------------LGQL 119 (205)
Q Consensus 72 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~--------------------------------~~~l 119 (205)
.+++.|++++|.+. .+|..+..+++|++|++++|++.+.+|.. +..+
T Consensus 127 ~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l 205 (328)
T 4fcg_A 127 AGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANL 205 (328)
T ss_dssp TTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGC
T ss_pred CCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCC
Confidence 45566666666665 55555555556666666555544444443 3444
Q ss_pred CCCcEEEcccCcCCCCCCccccCCCCCCEEEcccccCCCCCchhccCCCCCCeeecccCcCcccCChhhcCCCCCCEEEc
Q 043006 120 RRLRFISFTFNKLSGSIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNL 199 (205)
Q Consensus 120 ~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l 199 (205)
++|++|++++|.++ .+|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|++.+.+|..++++++|++|++
T Consensus 206 ~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L 284 (328)
T 4fcg_A 206 QNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDL 284 (328)
T ss_dssp TTCCEEEEESSCCC-CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEEC
T ss_pred CCCCEEEccCCCCC-cCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeC
Confidence 44444444444444 33434444444555555554444444544555555555555555555455555555555555555
Q ss_pred cCCC
Q 043006 200 GYNN 203 (205)
Q Consensus 200 s~N~ 203 (205)
++|+
T Consensus 285 ~~n~ 288 (328)
T 4fcg_A 285 RGCV 288 (328)
T ss_dssp TTCT
T ss_pred CCCC
Confidence 5544
No 25
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.81 E-value=1.1e-19 Score=131.58 Aligned_cols=131 Identities=21% Similarity=0.162 Sum_probs=116.9
Q ss_pred CcEEEEEcCCCCcc-ccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEE
Q 043006 72 QRVTALNHLDMGLG-GTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILS 150 (205)
Q Consensus 72 ~~l~~L~l~~~~l~-~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~ 150 (205)
.+++.|++++|.+. +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 67999999999998 78898899999999999999999854 6789999999999999999977888888899999999
Q ss_pred cccccCCCCC-chhccCCCCCCeeecccCcCcccCC---hhhcCCCCCCEEEccCCCC
Q 043006 151 LCNNSLTGLI-PNSLFNLSKLEMLDAMFNVIDGSIP---SGIRNLSNLFNLNLGYNNL 204 (205)
Q Consensus 151 l~~n~l~~~~-p~~~~~l~~L~~L~ls~n~l~~~~p---~~~~~l~~L~~L~ls~N~l 204 (205)
+++|.+++.. +..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence 9999999642 2788999999999999999994433 3789999999999999976
No 26
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.81 E-value=4.7e-19 Score=137.97 Aligned_cols=132 Identities=26% Similarity=0.227 Sum_probs=118.3
Q ss_pred CcEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEc
Q 043006 72 QRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSL 151 (205)
Q Consensus 72 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l 151 (205)
..++.|++++|.+.+ + +.+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus 63 ~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 140 (272)
T 3rfs_A 63 PNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNL 140 (272)
T ss_dssp TTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEEC
Confidence 689999999999986 3 47899999999999999999766777899999999999999999666677899999999999
Q ss_pred ccccCCCCCchhccCCCCCCeeecccCcCcccCChhhcCCCCCCEEEccCCCCC
Q 043006 152 CNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNLQ 205 (205)
Q Consensus 152 ~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~ 205 (205)
++|.+++..|..+..+++|++|++++|.+++..+..++.+++|++|++++|.++
T Consensus 141 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 194 (272)
T 3rfs_A 141 AHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK 194 (272)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred CCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCC
Confidence 999999777777889999999999999999666666889999999999999874
No 27
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.81 E-value=3.5e-19 Score=138.77 Aligned_cols=134 Identities=22% Similarity=0.166 Sum_probs=103.1
Q ss_pred CcEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEc
Q 043006 72 QRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSL 151 (205)
Q Consensus 72 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l 151 (205)
..++.|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 45788888888887666667788888888888888887655666777888888888888887666677778888888888
Q ss_pred ccccCCCCCchhccCCCCCCeeecccCcCcc-cCChhhcCCCCCCEEEccCCCCC
Q 043006 152 CNNSLTGLIPNSLFNLSKLEMLDAMFNVIDG-SIPSGIRNLSNLFNLNLGYNNLQ 205 (205)
Q Consensus 152 ~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~-~~p~~~~~l~~L~~L~ls~N~l~ 205 (205)
++|.+++..+..+..+++|++|++++|.+++ .+|..++++++|++|++++|+++
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~ 162 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 162 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCC
Confidence 8888876655567778888888888888874 35777888888888888888763
No 28
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.81 E-value=1.3e-19 Score=155.54 Aligned_cols=161 Identities=14% Similarity=0.090 Sum_probs=114.1
Q ss_pred CCCCcCCCCCCCCCCCc----ccceeeCC----------------CCCcEEEEEcCCCCccccCCccccCCCCCCEEEcc
Q 043006 45 YRSALANNWAMSSPICN----WIGISCGL----------------PHQRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLT 104 (205)
Q Consensus 45 ~~~~~~~~w~~~~~~c~----w~gv~c~~----------------~~~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~ 104 (205)
+.+..+..|.++.+||. |.++.|+. ....++.++++++.+....+..+..+++|++|+++
T Consensus 4 ~~~~~l~~~~~~~~C~~~~~~~~c~~~~~~i~~~~~~~~~~~~~l~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~ 83 (597)
T 3oja_B 4 QQRYNVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLN 83 (597)
T ss_dssp -------CCCSEECCCCC--CCSEEECSCEECSSCCCCEESCSSGGGCCCSEEEESSCEESEECTHHHHHCCCCSEEECT
T ss_pred cccccccCCCCCCcCcccCcCceeEecCceecccccccccCcccccCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECC
Confidence 44445677877666653 55544431 00345677888887765444446778888888888
Q ss_pred CCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEcccccCCCCCchhccCCCCCCeeecccCcCcccC
Q 043006 105 LNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSI 184 (205)
Q Consensus 105 ~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~ 184 (205)
+|.+++..|..|..+++|++|++++|.+++..|..++.+++|++|++++|.+++..+..|..+++|++|++++|.+++..
T Consensus 84 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~ 163 (597)
T 3oja_B 84 DLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIE 163 (597)
T ss_dssp TSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCC
T ss_pred CCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCC
Confidence 88888766667888888888888888888666667788888888888888888554555678888888888888888767
Q ss_pred ChhhcCCCCCCEEEccCCCCC
Q 043006 185 PSGIRNLSNLFNLNLGYNNLQ 205 (205)
Q Consensus 185 p~~~~~l~~L~~L~ls~N~l~ 205 (205)
|..++++++|++|++++|.++
T Consensus 164 ~~~~~~l~~L~~L~L~~N~l~ 184 (597)
T 3oja_B 164 DDTFQATTSLQNLQLSSNRLT 184 (597)
T ss_dssp TTTTTTCTTCCEEECTTSCCS
T ss_pred hhhhhcCCcCcEEECcCCCCC
Confidence 777888888888888888763
No 29
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.81 E-value=2.2e-19 Score=148.86 Aligned_cols=134 Identities=19% Similarity=0.149 Sum_probs=123.8
Q ss_pred CcEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEc
Q 043006 72 QRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSL 151 (205)
Q Consensus 72 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l 151 (205)
..++.+++++|.+.+..|..+..+++|++|++++|.+++..|..+..+++|++|++++|.+++..|..+..+++|++|++
T Consensus 275 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 354 (455)
T 3v47_A 275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDL 354 (455)
T ss_dssp SCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEEC
T ss_pred cCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEEC
Confidence 57899999999999999999999999999999999999888889999999999999999999777888999999999999
Q ss_pred ccccCCCCCchhccCCCCCCeeecccCcCcccCChhhcCCCCCCEEEccCCCCC
Q 043006 152 CNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNLQ 205 (205)
Q Consensus 152 ~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~ 205 (205)
++|.+++..|..+..+++|++|++++|++++..+..+..+++|++|++++|+++
T Consensus 355 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 408 (455)
T 3v47_A 355 SYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 408 (455)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcc
Confidence 999999888999999999999999999999554556789999999999999874
No 30
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.81 E-value=4.6e-19 Score=138.71 Aligned_cols=133 Identities=23% Similarity=0.200 Sum_probs=65.5
Q ss_pred CcEEEEEcCCCC-ccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEE
Q 043006 72 QRVTALNHLDMG-LGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILS 150 (205)
Q Consensus 72 ~~l~~L~l~~~~-l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~ 150 (205)
..++.|++++|. +.+..|..+..+++|++|++++|.+++..|..+..+++|++|++++|.+++..+..+..+++|++|+
T Consensus 80 ~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 159 (285)
T 1ozn_A 80 ALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLF 159 (285)
T ss_dssp TTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEE
Confidence 345555555554 4433344455555555555555555544444455555555555555555533333344555555555
Q ss_pred cccccCCCCCchhccCCCCCCeeecccCcCcccCChhhcCCCCCCEEEccCCCC
Q 043006 151 LCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNL 204 (205)
Q Consensus 151 l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l 204 (205)
+++|.+++..+..+..+++|+.|++++|.+++..|..++++++|+.|++++|.+
T Consensus 160 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 213 (285)
T 1ozn_A 160 LHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNL 213 (285)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred CCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcC
Confidence 555555533333344445555555555554444444444444444444444443
No 31
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.81 E-value=2.9e-19 Score=149.25 Aligned_cols=133 Identities=20% Similarity=0.125 Sum_probs=103.3
Q ss_pred CcEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEc
Q 043006 72 QRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSL 151 (205)
Q Consensus 72 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l 151 (205)
..++.|++++|.+++..|..+..+++|++|++++|.+++..|..|..+++|++|++++|.+++..+..+.++++|++|++
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 111 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDI 111 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEEC
T ss_pred CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEEC
Confidence 46778888888888777778888888888888888888766777888888888888888887443445777888888888
Q ss_pred ccccCCCCCchhccCCCCCCeeecccCcCcccCChhhcCCCCCCEEEccCCCC
Q 043006 152 CNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNL 204 (205)
Q Consensus 152 ~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l 204 (205)
++|.+++..|..+..+++|++|++++|.+.+..|..+.++++|+.|++++|.+
T Consensus 112 s~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 164 (477)
T 2id5_A 112 SENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNL 164 (477)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCC
T ss_pred CCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcC
Confidence 88888877777777778888888888877766666677777777777777765
No 32
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.81 E-value=6.6e-19 Score=133.17 Aligned_cols=128 Identities=26% Similarity=0.257 Sum_probs=114.4
Q ss_pred EEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEcccc
Q 043006 75 TALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSLCNN 154 (205)
Q Consensus 75 ~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~n 154 (205)
+.+++++++++ .+|..+. +.+++|++++|.+++..+..|..+++|++|++++|.+++..|..+..+++|++|++++|
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 46789999987 6777665 68999999999999766678999999999999999999777899999999999999999
Q ss_pred cCCCCCchhccCCCCCCeeecccCcCcccCChhhcCCCCCCEEEccCCCCC
Q 043006 155 SLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNLQ 205 (205)
Q Consensus 155 ~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~ 205 (205)
.+++..+..|..+++|++|++++|.+++..|..+..+++|++|++++|+|+
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 141 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQ 141 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCC
Confidence 999665566789999999999999999777888999999999999999874
No 33
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.80 E-value=1e-19 Score=129.20 Aligned_cols=128 Identities=19% Similarity=0.153 Sum_probs=114.4
Q ss_pred CcEEEEEcCCCCcc-ccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEE
Q 043006 72 QRVTALNHLDMGLG-GTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILS 150 (205)
Q Consensus 72 ~~l~~L~l~~~~l~-~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~ 150 (205)
.+++.|++++|.+. +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 57899999999998 78999899999999999999999865 6788999999999999999977888888899999999
Q ss_pred cccccCCCC-CchhccCCCCCCeeecccCcCcccCC---hhhcCCCCCCEEEccC
Q 043006 151 LCNNSLTGL-IPNSLFNLSKLEMLDAMFNVIDGSIP---SGIRNLSNLFNLNLGY 201 (205)
Q Consensus 151 l~~n~l~~~-~p~~~~~l~~L~~L~ls~n~l~~~~p---~~~~~l~~L~~L~ls~ 201 (205)
+++|.+++. .|..+..+++|++|++++|.+++..+ ..++.+++|+.|++++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 999999963 34789999999999999999995544 4688999999999874
No 34
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.80 E-value=9.5e-19 Score=136.03 Aligned_cols=132 Identities=22% Similarity=0.230 Sum_probs=67.3
Q ss_pred cEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEcc
Q 043006 73 RVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSLC 152 (205)
Q Consensus 73 ~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~ 152 (205)
.++.|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|+++
T Consensus 86 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 165 (270)
T 2o6q_A 86 NLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLY 165 (270)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEec
Confidence 34445555554443333334445555555555555554334444555555555555555553222334555555555555
Q ss_pred cccCCCCCchhccCCCCCCeeecccCcCcccCChhhcCCCCCCEEEccCCCC
Q 043006 153 NNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNL 204 (205)
Q Consensus 153 ~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l 204 (205)
+|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|++
T Consensus 166 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 166 NNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp SSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCe
Confidence 5555544444455555566666666655532233355555666666666554
No 35
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.80 E-value=3.8e-19 Score=140.41 Aligned_cols=133 Identities=24% Similarity=0.285 Sum_probs=108.2
Q ss_pred CcEEEEEcCCCCccccCCccccCCCCCCEEEccCCcccc-ccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEE
Q 043006 72 QRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHG-HLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILS 150 (205)
Q Consensus 72 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~-~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~ 150 (205)
.+++.|++++|.+.+..+..+..+++|++|++++|.+++ ..|..+..+++|++|++++|.+++..|..+..+++|++|+
T Consensus 126 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 205 (306)
T 2z66_A 126 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 205 (306)
T ss_dssp TTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred cCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEE
Confidence 567788888888877777778888888888888888875 4677788888888888888888866677888888888888
Q ss_pred cccccCCCCCchhccCCCCCCeeecccCcCcccCChhhcCCC-CCCEEEccCCCC
Q 043006 151 LCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLS-NLFNLNLGYNNL 204 (205)
Q Consensus 151 l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~-~L~~L~ls~N~l 204 (205)
+++|.+++..+..+..+++|++|++++|.+++..|..+..++ +|++|++++|++
T Consensus 206 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~ 260 (306)
T 2z66_A 206 MSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260 (306)
T ss_dssp CTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCE
T ss_pred CCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCe
Confidence 888888876666778888888888888888877787787774 888888888875
No 36
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.80 E-value=8.5e-19 Score=130.03 Aligned_cols=125 Identities=25% Similarity=0.302 Sum_probs=108.2
Q ss_pred EEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEccccc
Q 043006 76 ALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSLCNNS 155 (205)
Q Consensus 76 ~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~n~ 155 (205)
.+++++++++ .+|..+. +.+++|++++|.++ .+|..+..+++|++|++++|.+++..+..|..+++|++|++++|.
T Consensus 14 ~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 14 VVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp EEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence 5677777776 5676554 58999999999998 788889999999999999999997667789999999999999999
Q ss_pred CCCCCchhccCCCCCCeeecccCcCcccCChhhcCCCCCCEEEccCCCC
Q 043006 156 LTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNL 204 (205)
Q Consensus 156 l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l 204 (205)
+++..|..|..+++|++|++++|.+++..+..+..+++|+.|++++|++
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred cCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCe
Confidence 9988788899999999999999999944444688999999999999976
No 37
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.80 E-value=9.1e-19 Score=133.15 Aligned_cols=135 Identities=24% Similarity=0.231 Sum_probs=117.3
Q ss_pred ccceeeCCCCCcEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCcccc
Q 043006 62 WIGISCGLPHQRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIG 141 (205)
Q Consensus 62 w~gv~c~~~~~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~ 141 (205)
|..-.|. .+.++.+++.++ .+|..+. +.|++|++++|.+++..|..+..+++|++|++++|.++...+..+.
T Consensus 14 ~~~~~Cs-----~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~ 85 (229)
T 3e6j_A 14 PSQCSCS-----GTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFD 85 (229)
T ss_dssp CTTCEEE-----TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred CCCCEEe-----CCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcc
Confidence 3445564 246889998886 6777654 7899999999999988788899999999999999999844446679
Q ss_pred CCCCCCEEEcccccCCCCCchhccCCCCCCeeecccCcCcccCChhhcCCCCCCEEEccCCCCC
Q 043006 142 VLSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNLQ 205 (205)
Q Consensus 142 ~l~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~ 205 (205)
.+++|++|++++|.+++..+..+..+++|++|++++|.++ .+|..+.++++|++|++++|+|+
T Consensus 86 ~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~ 148 (229)
T 3e6j_A 86 SLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLK 148 (229)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCC
T ss_pred cCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCC
Confidence 9999999999999999776777889999999999999999 89999999999999999999874
No 38
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.80 E-value=6.2e-20 Score=160.73 Aligned_cols=173 Identities=20% Similarity=0.210 Sum_probs=118.9
Q ss_pred CChhhHHHHHHHHhccccCCCCcCCCCCCC-CCCCcccceeeCCCCCcEEEEEc------------------CCCCccc-
Q 043006 27 NITTDQSALLAFKAHVVDYRSALANNWAMS-SPICNWIGISCGLPHQRVTALNH------------------LDMGLGG- 86 (205)
Q Consensus 27 ~~~~~~~~l~~~~~~~~~~~~~~~~~w~~~-~~~c~w~gv~c~~~~~~l~~L~l------------------~~~~l~~- 86 (205)
..+.++.++.+++....+..+.....|... ...+.|.++.+.. ++++.+++ +.+.+.+
T Consensus 129 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~ 206 (727)
T 4b8c_D 129 LVDCTKQALMEMADTLTDSKTAKKQQPTGDSTPSGTATNSAVST--PLTPKIELFANGKDEANQALLQHKKLSQYSIDED 206 (727)
T ss_dssp ---CCCHHHHHHHHHHHHHHTTC---------------------------------------------------------
T ss_pred ccccchhhhhhhhhhcccccCcccCCCcCCCCccccCCCceecC--CccceEEeeCCCCCcchhhHhhcCccCcccccCc
Confidence 456778899999988876666666667433 3456787766543 33333333 3333332
Q ss_pred --------cCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEcccccCCC
Q 043006 87 --------TIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSLCNNSLTG 158 (205)
Q Consensus 87 --------~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~n~l~~ 158 (205)
..|..+..++.|++|++++|.+. .+|..+..+++|++|++++|.++ .+|..+..+++|++|+|++|.++
T Consensus 207 ~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~- 283 (727)
T 4b8c_D 207 DDIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT- 283 (727)
T ss_dssp ---------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-
T ss_pred cccccceecChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-
Confidence 23566888999999999999998 78888889999999999999999 99999999999999999999999
Q ss_pred CCchhccCCCCCCeeecccCcCcccCChhhcCCCCCCEEEccCCCCC
Q 043006 159 LIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNLQ 205 (205)
Q Consensus 159 ~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~ 205 (205)
.+|..++.+++|++|++++|.++ .+|..++++++|++|+|++|.|+
T Consensus 284 ~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~ 329 (727)
T 4b8c_D 284 SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLE 329 (727)
T ss_dssp SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCC
T ss_pred ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccC
Confidence 78999999999999999999997 89999999999999999999875
No 39
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.79 E-value=2.7e-18 Score=135.03 Aligned_cols=131 Identities=27% Similarity=0.201 Sum_probs=81.8
Q ss_pred CcEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEc
Q 043006 72 QRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSL 151 (205)
Q Consensus 72 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l 151 (205)
..++.|++++|.+. .+|..+..+++|++|++++|++++..|..|..+++|++|++++|++++..+..+..+++|++|++
T Consensus 77 ~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 155 (290)
T 1p9a_G 77 PVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL 155 (290)
T ss_dssp TTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEEC
Confidence 45566666666665 45555666666666666666666444455666666666666666666443444566666666666
Q ss_pred ccccCCCCCchhccCCCCCCeeecccCcCcccCChhhcCCCCCCEEEccCCCC
Q 043006 152 CNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNL 204 (205)
Q Consensus 152 ~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l 204 (205)
++|++++..+..+..+++|++|++++|.++ .+|..+....+|+.+++++|++
T Consensus 156 ~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 156 ANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp TTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCB
T ss_pred CCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCc
Confidence 666666443344556666666666666666 6666666666666677766654
No 40
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.79 E-value=8.4e-19 Score=150.28 Aligned_cols=134 Identities=19% Similarity=0.055 Sum_probs=111.5
Q ss_pred CcEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEc
Q 043006 72 QRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSL 151 (205)
Q Consensus 72 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l 151 (205)
..++.|++++|.+++..|..+.++++|++|++++|.+++..|..|..+++|++|++++|.+++..|..+..+++|++|++
T Consensus 33 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 112 (606)
T 3t6q_A 33 NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFF 112 (606)
T ss_dssp TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEEC
T ss_pred CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeec
Confidence 56889999999998877888999999999999999988777888889999999999999988777888888999999999
Q ss_pred ccccCCCCCchhccCCCCCCeeecccCcCcccCChhhcCCCCCCEEEccCCCCC
Q 043006 152 CNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNLQ 205 (205)
Q Consensus 152 ~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~ 205 (205)
++|.+++..|..+..+++|++|++++|.+++..+..+..+++|++|++++|.++
T Consensus 113 ~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 166 (606)
T 3t6q_A 113 IQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIH 166 (606)
T ss_dssp TTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCC
T ss_pred cccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCccc
Confidence 999888765677888888888888888888533233445888888888888763
No 41
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.79 E-value=7.2e-19 Score=146.11 Aligned_cols=133 Identities=24% Similarity=0.161 Sum_probs=102.9
Q ss_pred CcEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEc
Q 043006 72 QRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSL 151 (205)
Q Consensus 72 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l 151 (205)
..++.|++++|.+++..|..+..+++|++|++++|.+++..|..|..+++|++|++++|.+++..+..+..+++|++|++
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 154 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL 154 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence 57899999999999888889999999999999999999777788999999999999999999555566888999999999
Q ss_pred ccccCCCCCchhccCCCCCCeeecccCcCcccCCh-hhcCCCCCCEEEccCCCC
Q 043006 152 CNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPS-GIRNLSNLFNLNLGYNNL 204 (205)
Q Consensus 152 ~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~-~~~~l~~L~~L~ls~N~l 204 (205)
++|.+++..+..+..+++|++|++++|+..+.+|. .+..+++|++|++++|.+
T Consensus 155 ~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l 208 (452)
T 3zyi_A 155 RNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNI 208 (452)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred CCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcc
Confidence 99998865555666666666666666333334443 355555555555555544
No 42
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.79 E-value=1.3e-18 Score=136.83 Aligned_cols=130 Identities=31% Similarity=0.304 Sum_probs=91.3
Q ss_pred CcEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEc
Q 043006 72 QRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSL 151 (205)
Q Consensus 72 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l 151 (205)
.+++.|++++|.+++. +.. ..+++|++|++++|.++ .+|..+..+++|++|++++|++++..|..+..+++|++|++
T Consensus 55 ~~L~~L~L~~n~l~~~-~~~-~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L 131 (290)
T 1p9a_G 55 TRLTQLNLDRAELTKL-QVD-GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYL 131 (290)
T ss_dssp TTCCEEECTTSCCCEE-ECC-SCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEEC
T ss_pred CCCCEEECCCCccCcc-cCC-CCCCcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEEC
Confidence 4556666666665532 221 55666667777777666 56666777778888888888887555566778888888888
Q ss_pred ccccCCCCCchhccCCCCCCeeecccCcCcccCCh-hhcCCCCCCEEEccCCCCC
Q 043006 152 CNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPS-GIRNLSNLFNLNLGYNNLQ 205 (205)
Q Consensus 152 ~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~-~~~~l~~L~~L~ls~N~l~ 205 (205)
++|++++..+..|..+++|+.|++++|+++ .+|. .+.++++|++|++++|+|+
T Consensus 132 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~L~~N~l~ 185 (290)
T 1p9a_G 132 KGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLY 185 (290)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECTTSCCS-CCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CCCCCCccChhhcccccCCCEEECCCCcCC-ccCHHHhcCcCCCCEEECCCCcCC
Confidence 888888665566677888888888888887 4444 4567888888888888764
No 43
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.79 E-value=1.6e-18 Score=143.49 Aligned_cols=133 Identities=24% Similarity=0.162 Sum_probs=97.3
Q ss_pred CcEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEc
Q 043006 72 QRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSL 151 (205)
Q Consensus 72 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l 151 (205)
..++.|++++|.+.+..+..+..+++|++|++++|.+++..+..|..+++|++|++++|.++...+..+..+++|++|++
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 143 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL 143 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence 45788999999998777788888999999999999988766777888889999999999888444456888888888888
Q ss_pred ccccCCCCCchhccCCCCCCeeecccCcCcccCCh-hhcCCCCCCEEEccCCCC
Q 043006 152 CNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPS-GIRNLSNLFNLNLGYNNL 204 (205)
Q Consensus 152 ~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~-~~~~l~~L~~L~ls~N~l 204 (205)
++|.+++..+..+..+++|++|++++|+..+.++. .+.++++|++|++++|.+
T Consensus 144 ~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l 197 (440)
T 3zyj_A 144 RNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNL 197 (440)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCC
T ss_pred CCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcC
Confidence 88888855555566666666666666433323333 355555555555555544
No 44
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.78 E-value=8.1e-19 Score=129.95 Aligned_cols=129 Identities=21% Similarity=0.252 Sum_probs=113.0
Q ss_pred CCCCcccceeeCCCC---------CcEEEEEcCCCCccccCCc-cccCCCCCCEEEccCCccccccccccCCCCCCcEEE
Q 043006 57 SPICNWIGISCGLPH---------QRVTALNHLDMGLGGTIPS-HLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFIS 126 (205)
Q Consensus 57 ~~~c~w~gv~c~~~~---------~~l~~L~l~~~~l~~~~p~-~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ 126 (205)
...|.|..+.|.... ..++.|++++|.+.+..+. .+..+++|++|++++|.+++..|..|..+++|++|+
T Consensus 5 ~C~C~~~~l~~s~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 84 (192)
T 1w8a_A 5 MCHCEGTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQ 84 (192)
T ss_dssp TSEEETTEEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEE
T ss_pred CCEECCCEEEcCCCCcCcCccCCCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEE
Confidence 345678888886421 4789999999999866554 488999999999999999988899999999999999
Q ss_pred cccCcCCCCCCccccCCCCCCEEEcccccCCCCCchhccCCCCCCeeecccCcCcccCC
Q 043006 127 FTFNKLSGSIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIP 185 (205)
Q Consensus 127 l~~n~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p 185 (205)
+++|.+++..|..+..+++|++|++++|++++..|..+..+++|++|++++|.+++..+
T Consensus 85 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 85 LGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp CCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred CCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 99999997777889999999999999999999889999999999999999999886544
No 45
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.78 E-value=4.9e-18 Score=123.92 Aligned_cols=132 Identities=23% Similarity=0.251 Sum_probs=90.8
Q ss_pred CCCcccceeeCCCCCcEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCC
Q 043006 58 PICNWIGISCGLPHQRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIP 137 (205)
Q Consensus 58 ~~c~w~gv~c~~~~~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p 137 (205)
..|.|.++.|.. ++++ .+|..+. +.+++|++++|.+++..+..+..+++|++|++++|.+++..+
T Consensus 5 C~C~~~~l~~~~------------~~l~-~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 69 (177)
T 2o6r_A 5 CSCSGTEIRCNS------------KGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPD 69 (177)
T ss_dssp CEEETTEEECCS------------SCCS-SCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCT
T ss_pred CEeCCCEEEecC------------CCCc-cCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeCh
Confidence 446777777653 3333 3343332 477888888888775555556777888888888888874444
Q ss_pred ccccCCCCCCEEEcccccCCCCCchhccCCCCCCeeecccCcCcccCChhhcCCCCCCEEEccCCCC
Q 043006 138 TWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNL 204 (205)
Q Consensus 138 ~~~~~l~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l 204 (205)
..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|++
T Consensus 70 ~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 136 (177)
T 2o6r_A 70 GVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 136 (177)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred hHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCe
Confidence 5567788888888888888866556667778888888888888743333456778888888888875
No 46
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.78 E-value=9.4e-19 Score=133.63 Aligned_cols=132 Identities=17% Similarity=0.223 Sum_probs=110.1
Q ss_pred CcEEEEEcCCCCccccCCccccCCCCCCEEEccCCc-cccccccccCCCCCCcEEEccc-CcCCCCCCccccCCCCCCEE
Q 043006 72 QRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNN-FHGHLAHELGQLRRLRFISFTF-NKLSGSIPTWIGVLSKLRIL 149 (205)
Q Consensus 72 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~-~~~~~p~~~~~l~~L~~L~l~~-n~l~~~~p~~~~~l~~L~~l 149 (205)
..++.|++++|.+++..+..+..+++|++|++++|. ++...+..|..+++|++|++++ |.+++..+..+..+++|++|
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 478999999999997767788899999999999997 8755555788999999999998 99985555778899999999
Q ss_pred EcccccCCCCCchhccCCCCCC---eeecccC-cCcccCChhhcCCCCCC-EEEccCCCCC
Q 043006 150 SLCNNSLTGLIPNSLFNLSKLE---MLDAMFN-VIDGSIPSGIRNLSNLF-NLNLGYNNLQ 205 (205)
Q Consensus 150 ~l~~n~l~~~~p~~~~~l~~L~---~L~ls~n-~l~~~~p~~~~~l~~L~-~L~ls~N~l~ 205 (205)
++++|.+++ +|. +..+++|+ +|++++| .+++..+..+.++++|+ +|++++|.++
T Consensus 111 ~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~ 169 (239)
T 2xwt_C 111 GIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT 169 (239)
T ss_dssp EEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC
T ss_pred eCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc
Confidence 999999985 666 77888887 9999999 88744445688888898 8999888764
No 47
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.78 E-value=3.2e-18 Score=129.37 Aligned_cols=128 Identities=24% Similarity=0.217 Sum_probs=113.6
Q ss_pred EEEEcCCCCccccCCccccCCCCCCEEEccCCccccccc-cccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEccc
Q 043006 75 TALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLA-HELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSLCN 153 (205)
Q Consensus 75 ~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p-~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~ 153 (205)
+.++++++.++ .+|..+.. .+++|++++|.+++..| ..|..+++|++|++++|.+++..+..+..+++|++|++++
T Consensus 14 ~~l~~s~n~l~-~iP~~~~~--~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHIPQ--YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCS-SCCSCCCT--TCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCcc-cCccCCCC--CCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 37899999997 57776643 57899999999996644 3478999999999999999976677899999999999999
Q ss_pred ccCCCCCchhccCCCCCCeeecccCcCcccCChhhcCCCCCCEEEccCCCCC
Q 043006 154 NSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNLQ 205 (205)
Q Consensus 154 n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~ 205 (205)
|.+++..|..|..+++|++|++++|.+++..|..+..+++|++|++++|+|+
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 142 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQIT 142 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCC
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCC
Confidence 9999888888999999999999999999777888999999999999999874
No 48
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.78 E-value=1.2e-18 Score=137.54 Aligned_cols=133 Identities=20% Similarity=0.225 Sum_probs=84.1
Q ss_pred CcEEEEEcCCCCccccCC-ccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCC-CCCccccCCCCCCEE
Q 043006 72 QRVTALNHLDMGLGGTIP-SHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSG-SIPTWIGVLSKLRIL 149 (205)
Q Consensus 72 ~~l~~L~l~~~~l~~~~p-~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~-~~p~~~~~l~~L~~l 149 (205)
.+++.|++++|.+.+..+ ..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++ ..|..+..+++|++|
T Consensus 101 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 180 (306)
T 2z66_A 101 EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL 180 (306)
T ss_dssp TTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEE
T ss_pred CCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEE
Confidence 344555555555543322 345556666666666666665555556666666666666666654 356666667777777
Q ss_pred EcccccCCCCCchhccCCCCCCeeecccCcCcccCChhhcCCCCCCEEEccCCCC
Q 043006 150 SLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNL 204 (205)
Q Consensus 150 ~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l 204 (205)
++++|.+++..|..+..+++|++|++++|.+++..+..+..+++|++|++++|++
T Consensus 181 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 235 (306)
T 2z66_A 181 DLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI 235 (306)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCC
T ss_pred ECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCC
Confidence 7777777766566666777777777777777644444566677777777777765
No 49
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.78 E-value=9.4e-19 Score=142.66 Aligned_cols=134 Identities=17% Similarity=0.143 Sum_probs=97.6
Q ss_pred CcEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEc
Q 043006 72 QRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSL 151 (205)
Q Consensus 72 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l 151 (205)
..++.++++++.++..-+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..|..+..+++|++|++
T Consensus 45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 124 (390)
T 3o6n_A 45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 124 (390)
T ss_dssp CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEEC
Confidence 45667777777776433333567778888888888887655667777888888888888887666666778888888888
Q ss_pred ccccCCCCCchhccCCCCCCeeecccCcCcccCChhhcCCCCCCEEEccCCCCC
Q 043006 152 CNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNLQ 205 (205)
Q Consensus 152 ~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~ 205 (205)
++|.++...+..+..+++|++|++++|.+++..|..++++++|++|++++|.++
T Consensus 125 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 178 (390)
T 3o6n_A 125 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT 178 (390)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCS
T ss_pred CCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCC
Confidence 888887443344577788888888888887655666777888888888887653
No 50
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.78 E-value=5.3e-18 Score=135.27 Aligned_cols=146 Identities=16% Similarity=0.198 Sum_probs=121.4
Q ss_pred CCCCcccceeeCCC---------CCcEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEc
Q 043006 57 SPICNWIGISCGLP---------HQRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISF 127 (205)
Q Consensus 57 ~~~c~w~gv~c~~~---------~~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l 127 (205)
...|.|..+.|... ...++.|++++|.+++..+..+..+++|++|++++|.+++..|..+..+++|++|++
T Consensus 28 ~c~c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 28 RCQCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 107 (330)
T ss_dssp TCEEETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCcCCCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence 34568888888632 156889999999999777778999999999999999999777889999999999999
Q ss_pred ccCcCCCCCCccccCCCCCCEEEcccccCCCCCchhccCCCCCCeeecccCcCc--ccCChhhcCCCCCCEEEccCCCCC
Q 043006 128 TFNKLSGSIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVID--GSIPSGIRNLSNLFNLNLGYNNLQ 205 (205)
Q Consensus 128 ~~n~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~--~~~p~~~~~l~~L~~L~ls~N~l~ 205 (205)
++|.++ .+|..+. ++|++|++++|.+++..+..+..+++|++|++++|.+. +..+..+.++++|++|++++|.++
T Consensus 108 s~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~ 184 (330)
T 1xku_A 108 SKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT 184 (330)
T ss_dssp CSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC
T ss_pred CCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc
Confidence 999998 7776554 78999999999998777777888889999999988885 356677788888888888887653
No 51
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.78 E-value=1.5e-18 Score=154.35 Aligned_cols=144 Identities=19% Similarity=0.119 Sum_probs=125.1
Q ss_pred CcccceeeCCCCCcEEEEEcCCCCccccCCccccCCCCCCEEEccCCcccccc-ccccCCCCCCcEEEcccCcCCCCCCc
Q 043006 60 CNWIGISCGLPHQRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHL-AHELGQLRRLRFISFTFNKLSGSIPT 138 (205)
Q Consensus 60 c~w~gv~c~~~~~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~-p~~~~~l~~L~~L~l~~n~l~~~~p~ 138 (205)
|.|..|.+ ...+++.|++++|.+++..|..+..+++|++|++++|...+.+ |..|..+++|++|++++|.+++..|.
T Consensus 14 ~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~ 91 (844)
T 3j0a_A 14 CNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPD 91 (844)
T ss_dssp CCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTT
T ss_pred CCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHh
Confidence 45666665 2378999999999999888999999999999999999766666 77899999999999999999988899
Q ss_pred cccCCCCCCEEEcccccCCCCCchh--ccCCCCCCeeecccCcCcccCC-hhhcCCCCCCEEEccCCCCC
Q 043006 139 WIGVLSKLRILSLCNNSLTGLIPNS--LFNLSKLEMLDAMFNVIDGSIP-SGIRNLSNLFNLNLGYNNLQ 205 (205)
Q Consensus 139 ~~~~l~~L~~l~l~~n~l~~~~p~~--~~~l~~L~~L~ls~n~l~~~~p-~~~~~l~~L~~L~ls~N~l~ 205 (205)
.+.++++|++|++++|.+++.+|.. +..+++|++|++++|.+++..| ..++++++|++|++++|.++
T Consensus 92 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~ 161 (844)
T 3j0a_A 92 AFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIF 161 (844)
T ss_dssp SSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCC
T ss_pred HccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCC
Confidence 9999999999999999999877765 8899999999999999986654 57899999999999999863
No 52
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.77 E-value=3.2e-18 Score=145.47 Aligned_cols=134 Identities=22% Similarity=0.166 Sum_probs=109.5
Q ss_pred CcEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEc
Q 043006 72 QRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSL 151 (205)
Q Consensus 72 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l 151 (205)
..++.|++++|.+++..+..+..+++|++|++++|.+++..|..|..+++|++|++++|.+++..|..+..+++|++|++
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccc
Confidence 46888888888888777778888888888888888888666677888888888888888888666677888888888888
Q ss_pred ccccCCCCCchhccCCCCCCeeecccCcCcc-cCChhhcCCCCCCEEEccCCCCC
Q 043006 152 CNNSLTGLIPNSLFNLSKLEMLDAMFNVIDG-SIPSGIRNLSNLFNLNLGYNNLQ 205 (205)
Q Consensus 152 ~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~-~~p~~~~~l~~L~~L~ls~N~l~ 205 (205)
++|.+++..+..+..+++|++|++++|.+++ .+|..++++++|++|++++|.++
T Consensus 108 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~ 162 (570)
T 2z63_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 162 (570)
T ss_dssp TTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCC
T ss_pred cccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccc
Confidence 8888886544467888888888888888875 46888888888888888888763
No 53
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.77 E-value=1.8e-18 Score=150.09 Aligned_cols=133 Identities=23% Similarity=0.215 Sum_probs=102.4
Q ss_pred CcEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEc
Q 043006 72 QRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSL 151 (205)
Q Consensus 72 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l 151 (205)
.++++|++++|.+++..+..+..+++|++|++++|.+++..|..+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 104 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL 104 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEEC
Confidence 56788888888887666667888888888888888887766777777888888888888887333345778888888888
Q ss_pred ccccCCCCCchhccCCCCCCeeecccCcCcccCChhhcCCCCCCEEEccCCCC
Q 043006 152 CNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNL 204 (205)
Q Consensus 152 ~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l 204 (205)
++|.+++..|..+..+++|++|++++|.+++..|..++++++|++|++++|.+
T Consensus 105 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l 157 (680)
T 1ziw_A 105 MSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKI 157 (680)
T ss_dssp CSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCC
T ss_pred CCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcc
Confidence 88888766666777888888888888888766677777788888888887765
No 54
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.77 E-value=2e-18 Score=128.22 Aligned_cols=127 Identities=20% Similarity=0.240 Sum_probs=101.1
Q ss_pred CcEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEc
Q 043006 72 QRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSL 151 (205)
Q Consensus 72 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l 151 (205)
.+++.|++++|.+. .++.+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..|..+..+++|++|++
T Consensus 66 ~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L 143 (197)
T 4ezg_A 66 HNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDL 143 (197)
T ss_dssp TTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEEC
T ss_pred CCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEc
Confidence 56888888888654 3346788888888888888888767778888888888888888888777788888888888888
Q ss_pred cccc-CCCCCchhccCCCCCCeeecccCcCcccCChhhcCCCCCCEEEccCCCC
Q 043006 152 CNNS-LTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNL 204 (205)
Q Consensus 152 ~~n~-l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l 204 (205)
++|. ++ .+| .+..+++|++|++++|.++ .++ .+.++++|++|++++|+|
T Consensus 144 ~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~-~~~-~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 144 SYNGAIT-DIM-PLKTLPELKSLNIQFDGVH-DYR-GIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp CSCTBCC-CCG-GGGGCSSCCEEECTTBCCC-CCT-TGGGCSSCCEEEECBC--
T ss_pred cCCCCcc-ccH-hhcCCCCCCEEECCCCCCc-ChH-HhccCCCCCEEEeeCccc
Confidence 8887 55 555 5788888888888888887 455 578888888999888876
No 55
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.77 E-value=2.9e-18 Score=125.15 Aligned_cols=114 Identities=22% Similarity=0.180 Sum_probs=99.8
Q ss_pred CcEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEc
Q 043006 72 QRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSL 151 (205)
Q Consensus 72 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l 151 (205)
..++.|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 107 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL 107 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEEC
Confidence 57899999999999766667889999999999999999655666789999999999999999665666889999999999
Q ss_pred ccccCCCCCchhccCCCCCCeeecccCcCcccCC
Q 043006 152 CNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIP 185 (205)
Q Consensus 152 ~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p 185 (205)
++|.+++..+..+..+++|++|++++|.+.+..|
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 108 DTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred cCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 9999996655667889999999999999986654
No 56
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.77 E-value=1.3e-18 Score=149.08 Aligned_cols=131 Identities=21% Similarity=0.237 Sum_probs=70.1
Q ss_pred cEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccc-cccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEc
Q 043006 73 RVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGH-LAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSL 151 (205)
Q Consensus 73 ~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~-~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l 151 (205)
.++.|++++|.+.+..|..+..+++|++|++++|.+++. +|..+..+++|++|++++|.+++..|..+..+++|++|++
T Consensus 425 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 504 (606)
T 3vq2_A 425 KLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNM 504 (606)
T ss_dssp TCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred cCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEEC
Confidence 445555555555544555555555555555555555542 4444555555555555555555444555555555555555
Q ss_pred ccccCCCCCchhccCCCCCCeeecccCcCcccCChhhcCCC-CCCEEEccCCCC
Q 043006 152 CNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLS-NLFNLNLGYNNL 204 (205)
Q Consensus 152 ~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~-~L~~L~ls~N~l 204 (205)
++|++++..|..+..+++|++|++++|+++ .+|..+..++ +|+++++++|++
T Consensus 505 s~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~ 557 (606)
T 3vq2_A 505 SHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSV 557 (606)
T ss_dssp CSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCC
T ss_pred CCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCc
Confidence 555555555555555555555555555555 4454455554 355555555554
No 57
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.77 E-value=6e-18 Score=135.13 Aligned_cols=144 Identities=19% Similarity=0.240 Sum_probs=119.3
Q ss_pred CCCCcccceeeCCCC---------CcEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEc
Q 043006 57 SPICNWIGISCGLPH---------QRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISF 127 (205)
Q Consensus 57 ~~~c~w~gv~c~~~~---------~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l 127 (205)
...|.|..+.|.... ..++.|++++|.+.+..|..+..+++|++|++++|.+++..|..+..+++|++|++
T Consensus 30 ~c~c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 30 GCHCHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp SCEEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred CCcccCCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence 345788888886322 47899999999999777888999999999999999999877889999999999999
Q ss_pred ccCcCCCCCCccccCCCCCCEEEcccccCCCCCchhccCCCCCCeeecccCcCc--ccCChhhcCCCCCCEEEccCCCC
Q 043006 128 TFNKLSGSIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVID--GSIPSGIRNLSNLFNLNLGYNNL 204 (205)
Q Consensus 128 ~~n~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~--~~~p~~~~~l~~L~~L~ls~N~l 204 (205)
++|.++ .+|..+. ++|++|++++|.+++..+..+..+++|+.|++++|.++ +..|..+..+ +|++|++++|.+
T Consensus 110 ~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l 184 (332)
T 2ft3_A 110 SKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKL 184 (332)
T ss_dssp CSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBC
T ss_pred CCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCC
Confidence 999998 7776654 79999999999999766667889999999999999985 3556666666 666666666654
No 58
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.77 E-value=2.1e-18 Score=128.14 Aligned_cols=128 Identities=14% Similarity=0.218 Sum_probs=115.3
Q ss_pred CcEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEc
Q 043006 72 QRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSL 151 (205)
Q Consensus 72 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l 151 (205)
.+++.|++++|.+. .+| .+..+++|++|++++|.++ .+..+..+++|++|++++|.+++..|..+..+++|++|++
T Consensus 44 ~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 119 (197)
T 4ezg_A 44 NSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI 119 (197)
T ss_dssp HTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEEC
T ss_pred CCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEe
Confidence 56899999999998 666 6899999999999999776 3347889999999999999999878899999999999999
Q ss_pred ccccCCCCCchhccCCCCCCeeecccCc-CcccCChhhcCCCCCCEEEccCCCCC
Q 043006 152 CNNSLTGLIPNSLFNLSKLEMLDAMFNV-IDGSIPSGIRNLSNLFNLNLGYNNLQ 205 (205)
Q Consensus 152 ~~n~l~~~~p~~~~~l~~L~~L~ls~n~-l~~~~p~~~~~l~~L~~L~ls~N~l~ 205 (205)
++|.+++..|..+..+++|++|++++|. +. .+| .+..+++|++|++++|+++
T Consensus 120 s~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~ 172 (197)
T 4ezg_A 120 SHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVH 172 (197)
T ss_dssp CSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCC
T ss_pred cCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCc
Confidence 9999998888999999999999999998 65 666 6899999999999999874
No 59
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.77 E-value=1.4e-19 Score=156.39 Aligned_cols=131 Identities=24% Similarity=0.364 Sum_probs=108.7
Q ss_pred CcEEEEEcCCCCcccc-----------------CCcccc--CCCCCCEEEccCCccccccccccCCCCCCcEEEcccCc-
Q 043006 72 QRVTALNHLDMGLGGT-----------------IPSHLG--NLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNK- 131 (205)
Q Consensus 72 ~~l~~L~l~~~~l~~~-----------------~p~~l~--~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~- 131 (205)
.+++.|++++|.++|. +|..+. ++++|++|++++|.+.+.+|..+..+++|++|++++|.
T Consensus 206 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~ 285 (636)
T 4eco_A 206 TKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRG 285 (636)
T ss_dssp TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTT
T ss_pred cCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCC
Confidence 6788999999998885 888888 89999999999999888889888889999999999998
Q ss_pred CCC-CCCccccCC------CCCCEEEcccccCCCCCch--hccCCCCCCeeecccCcCcccCChhhcCCCCCCEEEccCC
Q 043006 132 LSG-SIPTWIGVL------SKLRILSLCNNSLTGLIPN--SLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYN 202 (205)
Q Consensus 132 l~~-~~p~~~~~l------~~L~~l~l~~n~l~~~~p~--~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~N 202 (205)
++| .+|..++.+ ++|++|++++|.++ .+|. .+..+++|++|++++|.++|.+| .++++++|++|++++|
T Consensus 286 l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N 363 (636)
T 4eco_A 286 ISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYN 363 (636)
T ss_dssp SCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSS
T ss_pred CccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCC
Confidence 887 788777665 88888888888888 7777 78888888888888888887777 6777777777777776
Q ss_pred CC
Q 043006 203 NL 204 (205)
Q Consensus 203 ~l 204 (205)
.+
T Consensus 364 ~l 365 (636)
T 4eco_A 364 QI 365 (636)
T ss_dssp EE
T ss_pred cc
Confidence 54
No 60
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.76 E-value=3.3e-18 Score=133.22 Aligned_cols=133 Identities=23% Similarity=0.225 Sum_probs=103.2
Q ss_pred CcEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEc
Q 043006 72 QRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSL 151 (205)
Q Consensus 72 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l 151 (205)
.+++.|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus 52 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 131 (276)
T 2z62_A 52 PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNV 131 (276)
T ss_dssp TTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEEC
T ss_pred cCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEEC
Confidence 67888899998888766677888888999999999888766677888888889998888888555557888888888888
Q ss_pred ccccCCC-CCchhccCCCCCCeeecccCcCcccCChhhcCCCCCC----EEEccCCCC
Q 043006 152 CNNSLTG-LIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLF----NLNLGYNNL 204 (205)
Q Consensus 152 ~~n~l~~-~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~----~L~ls~N~l 204 (205)
++|.+++ .+|..+..+++|++|++++|.+++..+..+..+++|+ .|++++|.+
T Consensus 132 ~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l 189 (276)
T 2z62_A 132 AHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPM 189 (276)
T ss_dssp CSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCC
T ss_pred cCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcc
Confidence 8888886 3588888888888888888888755444554444443 566666554
No 61
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.75 E-value=6.9e-18 Score=142.21 Aligned_cols=132 Identities=24% Similarity=0.286 Sum_probs=85.4
Q ss_pred CcEEEEEcCCCCccccCCccccCCCCCCEEEccCCcccc--ccccccCCCCCCcEEEcccCcCCCCCCcc-ccCCCCCCE
Q 043006 72 QRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHG--HLAHELGQLRRLRFISFTFNKLSGSIPTW-IGVLSKLRI 148 (205)
Q Consensus 72 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~--~~p~~~~~l~~L~~L~l~~n~l~~~~p~~-~~~l~~L~~ 148 (205)
..++.|++++|.+.+.+|..+..+++|++|++++|.+++ .+|..+..+++|++|++++|.+++.+|.. +..+++|++
T Consensus 324 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~ 403 (520)
T 2z7x_B 324 SPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLS 403 (520)
T ss_dssp CCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCE
T ss_pred CcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCE
Confidence 567888888888887777778888888888888888875 45566777778888888888777546643 555555555
Q ss_pred EEcccccCCCC---------------------CchhccCCCCCCeeecccCcCcccCChh-hcCCCCCCEEEccCCCC
Q 043006 149 LSLCNNSLTGL---------------------IPNSLFNLSKLEMLDAMFNVIDGSIPSG-IRNLSNLFNLNLGYNNL 204 (205)
Q Consensus 149 l~l~~n~l~~~---------------------~p~~~~~l~~L~~L~ls~n~l~~~~p~~-~~~l~~L~~L~ls~N~l 204 (205)
|++++|.+++. +|..+..+++|++|++++|+++ .+|.. +.++++|++|++++|++
T Consensus 404 L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~ 480 (520)
T 2z7x_B 404 LNMSSNILTDTIFRCLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPW 480 (520)
T ss_dssp EECCSSCCCGGGGGSCCTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCB
T ss_pred EECcCCCCCcchhhhhcccCCEEECCCCcccccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcccEEECcCCCC
Confidence 55555555444 4444445555555555555555 44443 45555555555555554
No 62
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.75 E-value=1.1e-17 Score=143.45 Aligned_cols=134 Identities=25% Similarity=0.290 Sum_probs=121.7
Q ss_pred CcEEEEEcCCCCccccCCccccCCCCCCEEEccCCccc-cccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEE
Q 043006 72 QRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFH-GHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILS 150 (205)
Q Consensus 72 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~-~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~ 150 (205)
..++.++++.|.+.+..+..+..++.+++|++++|.+. +..|..+..+++|++|++++|++++..|..|.++++|++|+
T Consensus 445 ~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~ 524 (635)
T 4g8a_A 445 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 524 (635)
T ss_dssp TTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred cccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEE
Confidence 56778899999998888888999999999999999854 45678899999999999999999988889999999999999
Q ss_pred cccccCCCCCchhccCCCCCCeeecccCcCcccCChhhcCC-CCCCEEEccCCCCC
Q 043006 151 LCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNL-SNLFNLNLGYNNLQ 205 (205)
Q Consensus 151 l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l-~~L~~L~ls~N~l~ 205 (205)
+++|++++..|..+..+++|++|++++|++++..|..+.++ ++|++|++++|+++
T Consensus 525 Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~ 580 (635)
T 4g8a_A 525 MSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 580 (635)
T ss_dssp CTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBC
T ss_pred CCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCc
Confidence 99999998888889999999999999999998888888888 68999999999874
No 63
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.75 E-value=4e-17 Score=122.01 Aligned_cols=128 Identities=23% Similarity=0.224 Sum_probs=108.8
Q ss_pred EEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEcccc
Q 043006 75 TALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSLCNN 154 (205)
Q Consensus 75 ~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~n 154 (205)
+.++.++++++ .+|..+ .+++++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|
T Consensus 10 ~~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 10 TTVECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence 46788888876 566544 358999999999999666666889999999999999999555566789999999999999
Q ss_pred cCCCCCchhccCCCCCCeeecccCcCcccCChhhcCCCCCCEEEccCCCCC
Q 043006 155 SLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNLQ 205 (205)
Q Consensus 155 ~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~ 205 (205)
.+++..+..+..+++|++|++++|.+++..+..+.++++|++|++++|.++
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 137 (208)
T 2o6s_A 87 QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLK 137 (208)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred cCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccc
Confidence 999776667889999999999999999555556889999999999999874
No 64
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.74 E-value=1.2e-18 Score=138.12 Aligned_cols=133 Identities=17% Similarity=0.159 Sum_probs=75.4
Q ss_pred CcEEEEEcCCCCccccCCccccCC-----CCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCC--CCccc--cC
Q 043006 72 QRVTALNHLDMGLGGTIPSHLGNL-----LFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGS--IPTWI--GV 142 (205)
Q Consensus 72 ~~l~~L~l~~~~l~~~~p~~l~~l-----~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~--~p~~~--~~ 142 (205)
.+++.|++++|.+++. |..+..+ ++|++|++++|.+++..|..+..+++|++|++++|++.+. .|..+ ..
T Consensus 121 ~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~ 199 (312)
T 1wwl_A 121 PDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLK 199 (312)
T ss_dssp CCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTS
T ss_pred CCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhcc
Confidence 4455555555555544 4444444 5566666666665544445566666666666666665543 22233 55
Q ss_pred CCCCCEEEcccccCCC--CCc-hhccCCCCCCeeecccCcCcccCC-hhhcCCCCCCEEEccCCCCC
Q 043006 143 LSKLRILSLCNNSLTG--LIP-NSLFNLSKLEMLDAMFNVIDGSIP-SGIRNLSNLFNLNLGYNNLQ 205 (205)
Q Consensus 143 l~~L~~l~l~~n~l~~--~~p-~~~~~l~~L~~L~ls~n~l~~~~p-~~~~~l~~L~~L~ls~N~l~ 205 (205)
+++|++|++++|.+++ .++ ..+..+++|++|++++|.+++..| ..+..+++|++|++++|.|+
T Consensus 200 l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~ 266 (312)
T 1wwl_A 200 FPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK 266 (312)
T ss_dssp CTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS
T ss_pred CCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC
Confidence 6666666666666652 112 223455677777777777765554 33445667777777777653
No 65
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.74 E-value=9.5e-18 Score=140.04 Aligned_cols=133 Identities=20% Similarity=0.166 Sum_probs=102.0
Q ss_pred CcEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEc
Q 043006 72 QRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSL 151 (205)
Q Consensus 72 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l 151 (205)
.+++.|++++|.+.+..|..+.++++|++|++++|.++...+..|..+++|++|++++|.+++..|..+..+++|++|++
T Consensus 56 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l 135 (477)
T 2id5_A 56 PHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEV 135 (477)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEE
T ss_pred CCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEEC
Confidence 67888888888888777888888888888888888887544445777888888888888888666777788888888888
Q ss_pred ccccCCCCCchhccCCCCCCeeecccCcCcccCChhhcCCCCCCEEEccCCCC
Q 043006 152 CNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNL 204 (205)
Q Consensus 152 ~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l 204 (205)
++|.+++..|..+..+++|+.|++++|.+++..+..+.++++|+.|++++|.+
T Consensus 136 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i 188 (477)
T 2id5_A 136 GDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNI 188 (477)
T ss_dssp CCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCC
T ss_pred CCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcC
Confidence 88888776677777777888888888877743334566777777777777665
No 66
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.74 E-value=7.9e-18 Score=143.02 Aligned_cols=133 Identities=20% Similarity=0.224 Sum_probs=94.6
Q ss_pred cEEEEEcCCCCccccCC-ccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCC-CCCCccccCCCCCCEEE
Q 043006 73 RVTALNHLDMGLGGTIP-SHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLS-GSIPTWIGVLSKLRILS 150 (205)
Q Consensus 73 ~l~~L~l~~~~l~~~~p-~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~-~~~p~~~~~l~~L~~l~ 150 (205)
+++.|++++|.+.+..| ..+..+++|++|++++|.+.+..|..+..+++|++|++++|.++ +.+|..+..+++|++|+
T Consensus 397 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~ 476 (570)
T 2z63_A 397 QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLD 476 (570)
T ss_dssp TCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEE
T ss_pred CCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEE
Confidence 44555555555554433 34566667777777777776666666777777777777777776 45777777778888888
Q ss_pred cccccCCCCCchhccCCCCCCeeecccCcCcccCChhhcCCCCCCEEEccCCCCC
Q 043006 151 LCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNLQ 205 (205)
Q Consensus 151 l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~ 205 (205)
+++|++++..|..+..+++|++|++++|.+++..|..+.++++|+.|++++|+++
T Consensus 477 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 531 (570)
T 2z63_A 477 LSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 531 (570)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCccc
Confidence 8888887776777777888888888888887665666777888888888888753
No 67
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.74 E-value=1.8e-17 Score=141.11 Aligned_cols=133 Identities=23% Similarity=0.274 Sum_probs=85.3
Q ss_pred CCcEEEEEcCCCCccccCCccccCCCCCCEEEccCCcccc--ccccccCCCCCCcEEEcccCcCCCCCCcc-ccCCCCCC
Q 043006 71 HQRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHG--HLAHELGQLRRLRFISFTFNKLSGSIPTW-IGVLSKLR 147 (205)
Q Consensus 71 ~~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~--~~p~~~~~l~~L~~L~l~~n~l~~~~p~~-~~~l~~L~ 147 (205)
...++.|++++|.+++.+|..+..+++|++|++++|.+++ .+|..+..+++|++|++++|.+++.+|.. +..+++|+
T Consensus 352 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~ 431 (562)
T 3a79_B 352 PSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESIL 431 (562)
T ss_dssp CCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCC
T ss_pred CCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCC
Confidence 3678888888888887778788888888888888888875 33456777888888888888887645543 55555555
Q ss_pred EEEcccccCCCC---------------------CchhccCCCCCCeeecccCcCcccCChh-hcCCCCCCEEEccCCCC
Q 043006 148 ILSLCNNSLTGL---------------------IPNSLFNLSKLEMLDAMFNVIDGSIPSG-IRNLSNLFNLNLGYNNL 204 (205)
Q Consensus 148 ~l~l~~n~l~~~---------------------~p~~~~~l~~L~~L~ls~n~l~~~~p~~-~~~l~~L~~L~ls~N~l 204 (205)
+|++++|.+++. +|..+..+++|++|++++|+++ .+|.. +..+++|+.|++++|++
T Consensus 432 ~L~l~~n~l~~~~~~~l~~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~ 509 (562)
T 3a79_B 432 VLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPW 509 (562)
T ss_dssp EEECCSSCCCGGGGSSCCTTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCCB
T ss_pred EEECCCCCCCcchhhhhcCcCCEEECCCCcCcccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCCc
Confidence 555555555443 3444444555555555555555 44443 45555555555555544
No 68
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.74 E-value=1.1e-17 Score=140.38 Aligned_cols=141 Identities=20% Similarity=0.167 Sum_probs=117.5
Q ss_pred CcccceeeCCCCCcEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccC-CCCCCcEEEcccCcCCCCCCc
Q 043006 60 CNWIGISCGLPHQRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELG-QLRRLRFISFTFNKLSGSIPT 138 (205)
Q Consensus 60 c~w~gv~c~~~~~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~-~l~~L~~L~l~~n~l~~~~p~ 138 (205)
|.+.++.+.. .+.++.|++++|.+.+..|..+..+++|++|++++|.+++..|..+. .+++|++|++++|.+++. |.
T Consensus 109 N~l~~~~~~~-l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~~ 186 (487)
T 3oja_A 109 NNISRVSCSR-GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG 186 (487)
T ss_dssp SCCCCEEECC-CSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC
T ss_pred CcCCCCCccc-cCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-cc
Confidence 3445555542 36789999999999988888889999999999999999987787775 789999999999999854 33
Q ss_pred cccCCCCCCEEEcccccCCCCCchhccCCCCCCeeecccCcCcccCChhhcCCCCCCEEEccCCCCC
Q 043006 139 WIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNLQ 205 (205)
Q Consensus 139 ~~~~l~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~ 205 (205)
...+++|++|++++|.+++. |..+..+++|+.|++++|.++ .+|..++.+++|+.|++++|.++
T Consensus 187 -~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 187 -QVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp -CCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCBC
T ss_pred -cccCCCCCEEECCCCCCCCC-CHhHcCCCCccEEEecCCcCc-ccchhhccCCCCCEEEcCCCCCc
Confidence 44689999999999999965 455888999999999999998 57888889999999999999864
No 69
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.73 E-value=5.7e-18 Score=136.34 Aligned_cols=132 Identities=21% Similarity=0.248 Sum_probs=116.0
Q ss_pred CcEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCc--cccCCCCCCEE
Q 043006 72 QRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPT--WIGVLSKLRIL 149 (205)
Q Consensus 72 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~--~~~~l~~L~~l 149 (205)
.+++.|++++|.+++..|..+..+++|++|++++|.+++..+..+..+++|++|++++|.++ .+|. .+..+++|++|
T Consensus 76 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L 154 (353)
T 2z80_A 76 VNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQIL 154 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEE
T ss_pred CCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEE
Confidence 68999999999999888888999999999999999999544444889999999999999999 5665 78899999999
Q ss_pred Ecccc-cCCCCCchhccCCCCCCeeecccCcCcccCChhhcCCCCCCEEEccCCCC
Q 043006 150 SLCNN-SLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNL 204 (205)
Q Consensus 150 ~l~~n-~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l 204 (205)
++++| .+++..|..+..+++|++|++++|.+++..|..++++++|++|++++|.+
T Consensus 155 ~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l 210 (353)
T 2z80_A 155 RVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQH 210 (353)
T ss_dssp EEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCS
T ss_pred ECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCcc
Confidence 99999 46766677888999999999999999988888898988898898888875
No 70
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.73 E-value=2.3e-18 Score=152.95 Aligned_cols=130 Identities=22% Similarity=0.277 Sum_probs=101.9
Q ss_pred CcEEEEEcCCCCccc-----------------cCCcccc--CCCCCCEEEccCCccccccccccCCCCCCcEEEcccCc-
Q 043006 72 QRVTALNHLDMGLGG-----------------TIPSHLG--NLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNK- 131 (205)
Q Consensus 72 ~~l~~L~l~~~~l~~-----------------~~p~~l~--~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~- 131 (205)
.+++.|++++|.+++ .+|+.+. ++++|++|++++|.+.+.+|..+..+++|++|++++|+
T Consensus 448 ~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~ 527 (876)
T 4ecn_A 448 TKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRG 527 (876)
T ss_dssp TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTT
T ss_pred CCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCC
Confidence 678888888888887 3888877 88888888888888888888888888888888888887
Q ss_pred CCC-CCCccccCCC-------CCCEEEcccccCCCCCch--hccCCCCCCeeecccCcCcccCChhhcCCCCCCEEEccC
Q 043006 132 LSG-SIPTWIGVLS-------KLRILSLCNNSLTGLIPN--SLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGY 201 (205)
Q Consensus 132 l~~-~~p~~~~~l~-------~L~~l~l~~n~l~~~~p~--~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~ 201 (205)
++| .+|..++.++ +|++|++++|.++ .+|. .+..+++|+.|++++|.++ .+| .++++++|+.|++++
T Consensus 528 lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~ 604 (876)
T 4ecn_A 528 ISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDY 604 (876)
T ss_dssp SCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCS
T ss_pred cccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcC
Confidence 777 6776555443 7888888888877 6776 7777777777777777777 777 677777777777777
Q ss_pred CCC
Q 043006 202 NNL 204 (205)
Q Consensus 202 N~l 204 (205)
|.+
T Consensus 605 N~l 607 (876)
T 4ecn_A 605 NQI 607 (876)
T ss_dssp SCC
T ss_pred Ccc
Confidence 765
No 71
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.73 E-value=3.8e-17 Score=130.33 Aligned_cols=128 Identities=19% Similarity=0.168 Sum_probs=79.1
Q ss_pred EEEEEcCCCCccc--cCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEc
Q 043006 74 VTALNHLDMGLGG--TIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSL 151 (205)
Q Consensus 74 l~~L~l~~~~l~~--~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l 151 (205)
++.|++++|.+.. ..+..+..+++|++|++++|.++ .+|..+. ++|++|++++|.+++..|..+..+++|++|++
T Consensus 147 L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 223 (330)
T 1xku_A 147 MIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGL 223 (330)
T ss_dssp CCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEEC
T ss_pred ccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc-cCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence 3344444444321 23334444445555555555444 2333222 45666666666666555666777777777777
Q ss_pred ccccCCCCCchhccCCCCCCeeecccCcCcccCChhhcCCCCCCEEEccCCCCC
Q 043006 152 CNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNLQ 205 (205)
Q Consensus 152 ~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~ 205 (205)
++|.+++..+..+..+++|++|++++|.++ .+|..+..+++|++|++++|+|+
T Consensus 224 s~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~ 276 (330)
T 1xku_A 224 SFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS 276 (330)
T ss_dssp CSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCC
T ss_pred CCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCC
Confidence 777777665666777777777777777777 77777777777777777777763
No 72
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.73 E-value=3.2e-17 Score=121.49 Aligned_cols=123 Identities=23% Similarity=0.263 Sum_probs=107.3
Q ss_pred CCCcccceeeCCCC---------CcEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcc
Q 043006 58 PICNWIGISCGLPH---------QRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFT 128 (205)
Q Consensus 58 ~~c~w~gv~c~~~~---------~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~ 128 (205)
..|.|..+.|.... ..++.|++++|.++ .+|..+..+++|++|++++|.+++..+..|..+++|++|+++
T Consensus 8 C~C~~~~l~~~~~~l~~ip~~~~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls 86 (193)
T 2wfh_A 8 CTCLDTVVRCSNKGLKVLPKGIPRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILS 86 (193)
T ss_dssp CEEETTEEECTTSCCSSCCSCCCTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CEeCCCEEEcCCCCCCcCCCCCCCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECC
Confidence 34566666665321 57899999999998 788899999999999999999997777789999999999999
Q ss_pred cCcCCCCCCccccCCCCCCEEEcccccCCCCCchhccCCCCCCeeecccCcCc
Q 043006 129 FNKLSGSIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVID 181 (205)
Q Consensus 129 ~n~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~ 181 (205)
+|.+++..|..+..+++|++|++++|.+++..+..|..+++|+.|++++|.+.
T Consensus 87 ~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 87 YNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp SSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 99999777778999999999999999999666667889999999999999886
No 73
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.73 E-value=1.5e-17 Score=140.16 Aligned_cols=127 Identities=20% Similarity=0.179 Sum_probs=106.7
Q ss_pred CcEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEc
Q 043006 72 QRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSL 151 (205)
Q Consensus 72 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l 151 (205)
.+++.|++++|.+.+..|..+..+++|++|++++|.+++..|..|..+++|++|++++|.++ .+|.. .+++|++|++
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L 97 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDL 97 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEEC
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEec
Confidence 57888999999988777778888899999999999988777888888999999999999888 67766 7889999999
Q ss_pred ccccCCC-CCchhccCCCCCCeeecccCcCcccCChhhcCCCCC--CEEEccCCCC
Q 043006 152 CNNSLTG-LIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNL--FNLNLGYNNL 204 (205)
Q Consensus 152 ~~n~l~~-~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L--~~L~ls~N~l 204 (205)
++|.+++ .+|..+..+++|++|++++|.+++ ..+..+++| +.|++++|.+
T Consensus 98 ~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l 150 (520)
T 2z7x_B 98 SFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGET 150 (520)
T ss_dssp CSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTT
T ss_pred cCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccc
Confidence 9999887 577888889999999999998874 346677777 8899988876
No 74
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.73 E-value=3.8e-18 Score=135.33 Aligned_cols=131 Identities=22% Similarity=0.227 Sum_probs=82.0
Q ss_pred CcEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccc--ccccc--CCCCCCcEEEcccCcCCC--CCC-ccccCCC
Q 043006 72 QRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGH--LAHEL--GQLRRLRFISFTFNKLSG--SIP-TWIGVLS 144 (205)
Q Consensus 72 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~--~p~~~--~~l~~L~~L~l~~n~l~~--~~p-~~~~~l~ 144 (205)
.++++|++++|.+.+..|..+..+++|++|++++|.+.+. .|..+ ..+++|++|++++|.+++ .++ ..+..++
T Consensus 149 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~ 228 (312)
T 1wwl_A 149 PGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARV 228 (312)
T ss_dssp TTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTC
T ss_pred CCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCC
Confidence 4566777777777666656667777777777777766543 23333 566777777777777662 112 2234566
Q ss_pred CCCEEEcccccCCCCCc-hhccCCCCCCeeecccCcCcccCChhhcCCCCCCEEEccCCCCC
Q 043006 145 KLRILSLCNNSLTGLIP-NSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNLQ 205 (205)
Q Consensus 145 ~L~~l~l~~n~l~~~~p-~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~ 205 (205)
+|++|++++|.+++..| ..+..+++|++|++++|.++ .+|..+. ++|++|++++|+|+
T Consensus 229 ~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~ 287 (312)
T 1wwl_A 229 QLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLD 287 (312)
T ss_dssp CCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCC
T ss_pred CCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCC
Confidence 77777777777776554 33445667777777777776 6666554 66777777777653
No 75
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.72 E-value=1e-17 Score=135.42 Aligned_cols=132 Identities=20% Similarity=0.187 Sum_probs=114.7
Q ss_pred CcEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEc
Q 043006 72 QRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSL 151 (205)
Q Consensus 72 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l 151 (205)
.+++.|++++|.+.+..+..+..+++|++|++++|.+++..+..|..+++|++|++++|.+++..|..+..+++|++|++
T Consensus 64 ~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L 143 (361)
T 2xot_A 64 TNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYL 143 (361)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred cccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEEC
Confidence 67999999999999877788999999999999999999766677899999999999999999777889999999999999
Q ss_pred ccccCCCCCchhc---cCCCCCCeeecccCcCcccCC-hhhcCCCC--CCEEEccCCCC
Q 043006 152 CNNSLTGLIPNSL---FNLSKLEMLDAMFNVIDGSIP-SGIRNLSN--LFNLNLGYNNL 204 (205)
Q Consensus 152 ~~n~l~~~~p~~~---~~l~~L~~L~ls~n~l~~~~p-~~~~~l~~--L~~L~ls~N~l 204 (205)
++|.+++..+..+ ..+++|+.|++++|.++ .+| ..+..++. ++.|++++|++
T Consensus 144 ~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~~~l~~l~l~~N~~ 201 (361)
T 2xot_A 144 SQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK-KLPLTDLQKLPAWVKNGLYLHNNPL 201 (361)
T ss_dssp CSSCCCSCCGGGTC----CTTCCEEECCSSCCC-CCCHHHHHHSCHHHHTTEECCSSCE
T ss_pred CCCcCCeeCHHHhcCcccCCcCCEEECCCCCCC-ccCHHHhhhccHhhcceEEecCCCc
Confidence 9999996444444 56899999999999999 555 56777776 48899999986
No 76
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.72 E-value=3.7e-17 Score=140.05 Aligned_cols=134 Identities=20% Similarity=0.106 Sum_probs=120.9
Q ss_pred CcEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEc
Q 043006 72 QRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSL 151 (205)
Q Consensus 72 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l 151 (205)
.++++|++++|.+.+..|..+.++++|++|++++|.+++..|..+..+++|++|++++|.+++..|..+..+++|++|++
T Consensus 57 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L 136 (606)
T 3t6q_A 57 INLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYL 136 (606)
T ss_dssp TTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEEC
T ss_pred ccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEEC
Confidence 68999999999999888999999999999999999999888989999999999999999999666788999999999999
Q ss_pred ccccCCCCCchhccCCCCCCeeecccCcCcccCChhhcCCCCCC--EEEccCCCCC
Q 043006 152 CNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLF--NLNLGYNNLQ 205 (205)
Q Consensus 152 ~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~--~L~ls~N~l~ 205 (205)
++|.+++..+..+..+++|++|++++|.+++..|..++.+++|+ .|++++|.++
T Consensus 137 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~ 192 (606)
T 3t6q_A 137 GSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIA 192 (606)
T ss_dssp CSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCC
T ss_pred CCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccC
Confidence 99999974434455599999999999999977788899999999 8999999864
No 77
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.72 E-value=2.7e-17 Score=120.00 Aligned_cols=127 Identities=23% Similarity=0.219 Sum_probs=108.9
Q ss_pred CcEEEEEcCCCCccccCCccccCCC-CCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEE
Q 043006 72 QRVTALNHLDMGLGGTIPSHLGNLL-FLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILS 150 (205)
Q Consensus 72 ~~l~~L~l~~~~l~~~~p~~l~~l~-~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~ 150 (205)
..++.|++++|.++ .+|. +..+. +|++|++++|.+++. ..+..+++|++|++++|.+++..+..+..+++|++|+
T Consensus 19 ~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 94 (176)
T 1a9n_A 19 VRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELI 94 (176)
T ss_dssp TSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEE
T ss_pred CCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEE
Confidence 57899999999998 4554 55555 999999999999964 5789999999999999999944334458999999999
Q ss_pred cccccCCCCCch--hccCCCCCCeeecccCcCcccCChh----hcCCCCCCEEEccCCCC
Q 043006 151 LCNNSLTGLIPN--SLFNLSKLEMLDAMFNVIDGSIPSG----IRNLSNLFNLNLGYNNL 204 (205)
Q Consensus 151 l~~n~l~~~~p~--~~~~l~~L~~L~ls~n~l~~~~p~~----~~~l~~L~~L~ls~N~l 204 (205)
+++|.++ .+|. .+..+++|+.|++++|.++ .+|.. ++.+++|++||+++|.+
T Consensus 95 L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 95 LTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp CCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred CCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCH
Confidence 9999997 5665 7889999999999999998 67775 88999999999999863
No 78
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.72 E-value=6e-17 Score=134.11 Aligned_cols=131 Identities=27% Similarity=0.292 Sum_probs=73.4
Q ss_pred CcEEEEEcCCCCccccCCccccCCCCCCEEEccCCcccccccccc-------------------------CCCCCCcEEE
Q 043006 72 QRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHEL-------------------------GQLRRLRFIS 126 (205)
Q Consensus 72 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~-------------------------~~l~~L~~L~ 126 (205)
.+++.|++++|.+++..+..+..+++|++|++++|.++...+..| ..+++|++|+
T Consensus 112 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~ 191 (440)
T 3zyj_A 112 ANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLN 191 (440)
T ss_dssp SSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEE
T ss_pred ccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeec
Confidence 567778888877775555567777777777777777664333233 3344444444
Q ss_pred cccCcCCCCCCccccCCCCCCEEEcccccCCCCCchhccCCCCCCeeecccCcCcccCChhhcCCCCCCEEEccCCCC
Q 043006 127 FTFNKLSGSIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNL 204 (205)
Q Consensus 127 l~~n~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l 204 (205)
+++|.++ .+| .+..+++|++|++++|.+++..|..|..+++|+.|++++|.+++..|..+.++++|+.|++++|+|
T Consensus 192 L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l 267 (440)
T 3zyj_A 192 LAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNL 267 (440)
T ss_dssp CTTSCCS-SCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCC
T ss_pred CCCCcCc-ccc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCC
Confidence 4444444 333 244445555555555555544455555555555555555555544444455555555555555554
No 79
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.71 E-value=5.6e-17 Score=129.51 Aligned_cols=132 Identities=20% Similarity=0.179 Sum_probs=85.5
Q ss_pred cEEEEEcCCCCccccCCccccCCCCCCEEEccCCcccc--ccccccCCC--------------------CCCcEEEcccC
Q 043006 73 RVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHG--HLAHELGQL--------------------RRLRFISFTFN 130 (205)
Q Consensus 73 ~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~--~~p~~~~~l--------------------~~L~~L~l~~n 130 (205)
.++.|++++|.+.+..+..+..+++|++|++++|.++. ..|..+..+ ++|++|++++|
T Consensus 124 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n 203 (332)
T 2ft3_A 124 SLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHN 203 (332)
T ss_dssp TCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSS
T ss_pred cCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEECCCC
Confidence 34444454454443333345556666666666666541 223333222 34555556666
Q ss_pred cCCCCCCccccCCCCCCEEEcccccCCCCCchhccCCCCCCeeecccCcCcccCChhhcCCCCCCEEEccCCCCC
Q 043006 131 KLSGSIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNLQ 205 (205)
Q Consensus 131 ~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~ 205 (205)
.+++..|..+..+++|++|++++|.+++..|..+..+++|++|++++|.++ .+|..+..+++|+.|++++|+|+
T Consensus 204 ~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~ 277 (332)
T 2ft3_A 204 KIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT 277 (332)
T ss_dssp CCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCC
T ss_pred cCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCC
Confidence 666444566777778888888888888766667778888888888888887 77877888888888888888764
No 80
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.71 E-value=3.2e-17 Score=130.23 Aligned_cols=130 Identities=19% Similarity=0.163 Sum_probs=104.0
Q ss_pred CcEEEEEcCCCCccccCCccccCCCCCCEEEccCCcccccccccc-CCCCCCcEEEcccCcCCCCCCccccCCCCCCEEE
Q 043006 72 QRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHEL-GQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILS 150 (205)
Q Consensus 72 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~-~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~ 150 (205)
..++.|++++|.+++..+..+..+++|++|++++|.+++..+..+ ..+++|++|++++|.+++ +|. ...+++|++|+
T Consensus 120 ~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~-~~~l~~L~~L~ 197 (317)
T 3o53_A 120 QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD-VKG-QVVFAKLKTLD 197 (317)
T ss_dssp SSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE-EEC-CCCCTTCCEEE
T ss_pred CCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcc-ccc-ccccccCCEEE
Confidence 456777777777776666677888888888888888886666655 367888899998888874 343 34588899999
Q ss_pred cccccCCCCCchhccCCCCCCeeecccCcCcccCChhhcCCCCCCEEEccCCCCC
Q 043006 151 LCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNLQ 205 (205)
Q Consensus 151 l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~ 205 (205)
+++|.+++ +|..+..+++|++|++++|.++ .+|..+..+++|+.|++++|+++
T Consensus 198 Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 198 LSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp CCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCB
T ss_pred CCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCcc
Confidence 99999985 4555888899999999999998 67888888999999999999873
No 81
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.71 E-value=9.8e-17 Score=133.25 Aligned_cols=131 Identities=23% Similarity=0.250 Sum_probs=81.3
Q ss_pred CcEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccc-------------------------cCCCCCCcEEE
Q 043006 72 QRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHE-------------------------LGQLRRLRFIS 126 (205)
Q Consensus 72 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~-------------------------~~~l~~L~~L~ 126 (205)
.+++.|++++|.+++..+..+..+++|++|++++|.++...+.. +..+++|++|+
T Consensus 123 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~ 202 (452)
T 3zyi_A 123 ASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLN 202 (452)
T ss_dssp TTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEE
T ss_pred ccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEE
Confidence 56788888888887655556777888888888888776433323 33445555555
Q ss_pred cccCcCCCCCCccccCCCCCCEEEcccccCCCCCchhccCCCCCCeeecccCcCcccCChhhcCCCCCCEEEccCCCC
Q 043006 127 FTFNKLSGSIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNL 204 (205)
Q Consensus 127 l~~n~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l 204 (205)
+++|.++ .+| .+..+++|++|++++|.+++..|..|..+++|+.|++++|.+++..|..+..+++|+.|++++|+|
T Consensus 203 L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l 278 (452)
T 3zyi_A 203 LGMCNIK-DMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNL 278 (452)
T ss_dssp CTTSCCS-SCC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred CCCCccc-ccc-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcC
Confidence 5555554 233 244555666666666666655556666666666666666666655555566666666666666654
No 82
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.71 E-value=1.3e-16 Score=130.04 Aligned_cols=129 Identities=22% Similarity=0.271 Sum_probs=109.4
Q ss_pred CcEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCcc-ccCCCCCCEEE
Q 043006 72 QRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTW-IGVLSKLRILS 150 (205)
Q Consensus 72 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~-~~~l~~L~~l~ 150 (205)
++++.|++++|.+.+..+..+..+++|++|++++|.+++..|..+..+++|++|++++|.++ .+|.. +..+++|++|+
T Consensus 69 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~ 147 (390)
T 3o6n_A 69 RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLS 147 (390)
T ss_dssp CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEE
T ss_pred ccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccC-cCCHHHhcCCCCCcEEE
Confidence 57899999999999777778999999999999999999777778899999999999999999 66654 68999999999
Q ss_pred cccccCCCCCchhccCCCCCCeeecccCcCcccCChhhcCCCCCCEEEccCCCC
Q 043006 151 LCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNL 204 (205)
Q Consensus 151 l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l 204 (205)
+++|.+++..|..+..+++|++|++++|.+++ ++ ++.+++|+.+++++|.+
T Consensus 148 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~--~~~l~~L~~L~l~~n~l 198 (390)
T 3o6n_A 148 MSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-VD--LSLIPSLFHANVSYNLL 198 (390)
T ss_dssp CCSSCCCBCCTTTTSSCTTCCEEECCSSCCSB-CC--GGGCTTCSEEECCSSCC
T ss_pred CCCCccCccChhhccCCCCCCEEECCCCcCCc-cc--cccccccceeecccccc
Confidence 99999998878889999999999999999984 33 34455555555555543
No 83
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.71 E-value=1.1e-16 Score=137.45 Aligned_cols=130 Identities=21% Similarity=0.226 Sum_probs=110.6
Q ss_pred CcEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEc
Q 043006 72 QRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSL 151 (205)
Q Consensus 72 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l 151 (205)
..++.|++++|.+.+..|..+..+++|++|++++|.+++..|..|+.+++|++|++++|.+++..+..+..+++|++|++
T Consensus 75 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 154 (597)
T 3oja_B 75 RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSM 154 (597)
T ss_dssp CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEe
Confidence 57899999999999888889999999999999999999877778899999999999999999444445789999999999
Q ss_pred ccccCCCCCchhccCCCCCCeeecccCcCcccCChhhcCCCCCCEEEccCCCC
Q 043006 152 CNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNL 204 (205)
Q Consensus 152 ~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l 204 (205)
++|.+++..|..+..+++|+.|++++|.+++ ++ ++.+++|+.|++++|.+
T Consensus 155 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~--~~~l~~L~~L~l~~n~l 204 (597)
T 3oja_B 155 SNNNLERIEDDTFQATTSLQNLQLSSNRLTH-VD--LSLIPSLFHANVSYNLL 204 (597)
T ss_dssp CSSCCCBCCTTTTTTCTTCCEEECTTSCCSB-CC--GGGCTTCSEEECCSSCC
T ss_pred eCCcCCCCChhhhhcCCcCcEEECcCCCCCC-cC--hhhhhhhhhhhcccCcc
Confidence 9999998888889999999999999999984 33 34455555555555543
No 84
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.71 E-value=1.2e-17 Score=132.22 Aligned_cols=129 Identities=20% Similarity=0.188 Sum_probs=75.9
Q ss_pred CcEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccc--cc--cccCCCCCCcEEEcccCcCCCCCCc----cccCC
Q 043006 72 QRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGH--LA--HELGQLRRLRFISFTFNKLSGSIPT----WIGVL 143 (205)
Q Consensus 72 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~--~p--~~~~~l~~L~~L~l~~n~l~~~~p~----~~~~l 143 (205)
.+++.|++++|.+.+..|..+..+++|++|++++|++.+. ++ ..+..+++|++|++++|.++ .++. .+..+
T Consensus 145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l 223 (310)
T 4glp_A 145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAAG 223 (310)
T ss_dssp SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHT
T ss_pred cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhcC
Confidence 5788888888888777777788888888888888876542 21 11245556666666666654 2222 13445
Q ss_pred CCCCEEEcccccCCCCCchhccCC---CCCCeeecccCcCcccCChhhcCCCCCCEEEccCCCC
Q 043006 144 SKLRILSLCNNSLTGLIPNSLFNL---SKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNL 204 (205)
Q Consensus 144 ~~L~~l~l~~n~l~~~~p~~~~~l---~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l 204 (205)
++|++|++++|.+++..|..+..+ ++|++|++++|+++ .+|..+. ++|++|++++|+|
T Consensus 224 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l 284 (310)
T 4glp_A 224 VQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRL 284 (310)
T ss_dssp CCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCC
T ss_pred CCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcC
Confidence 556666666666655545444443 45555555555555 4454332 4555555555544
No 85
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.71 E-value=3.2e-17 Score=116.21 Aligned_cols=109 Identities=22% Similarity=0.181 Sum_probs=98.2
Q ss_pred CCCCCEEEccCCccc-cccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEcccccCCCCCchhccCCCCCCee
Q 043006 95 LLFLMSLDLTLNNFH-GHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLEML 173 (205)
Q Consensus 95 l~~L~~L~l~~n~~~-~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L 173 (205)
.+++++|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+++|++|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 468999999999998 78898889999999999999999954 778999999999999999998789888889999999
Q ss_pred ecccCcCccc-CChhhcCCCCCCEEEccCCCCC
Q 043006 174 DAMFNVIDGS-IPSGIRNLSNLFNLNLGYNNLQ 205 (205)
Q Consensus 174 ~ls~n~l~~~-~p~~~~~l~~L~~L~ls~N~l~ 205 (205)
++++|.+++. .|..++.+++|++|++++|.++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~ 126 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVT 126 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGG
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCccc
Confidence 9999999852 3477899999999999999863
No 86
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.71 E-value=7.5e-17 Score=137.32 Aligned_cols=127 Identities=20% Similarity=0.176 Sum_probs=105.2
Q ss_pred CcEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEc
Q 043006 72 QRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSL 151 (205)
Q Consensus 72 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l 151 (205)
++++.|++++|.+.+..|..+..+++|++|++++|.+++..|..|..+++|++|++++|.++ .+|.. .+++|++|++
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L 128 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDL 128 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEEC
T ss_pred CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEEC
Confidence 57889999999988777778888999999999999998777888888999999999999988 67766 7889999999
Q ss_pred ccccCCC-CCchhccCCCCCCeeecccCcCcccCChhhcCCCCC--CEEEccCCCC
Q 043006 152 CNNSLTG-LIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNL--FNLNLGYNNL 204 (205)
Q Consensus 152 ~~n~l~~-~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L--~~L~ls~N~l 204 (205)
++|.+++ .+|..+..+++|++|++++|.+++. .+..+++| ++|++++|.+
T Consensus 129 s~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l 181 (562)
T 3a79_B 129 SFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSY 181 (562)
T ss_dssp CSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSC
T ss_pred CCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccc
Confidence 9999886 4567888899999999999988742 34455555 8899988876
No 87
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.70 E-value=2.3e-17 Score=139.76 Aligned_cols=132 Identities=16% Similarity=0.185 Sum_probs=112.4
Q ss_pred CcEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCC-CCCccccCCCCCCEEE
Q 043006 72 QRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSG-SIPTWIGVLSKLRILS 150 (205)
Q Consensus 72 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~-~~p~~~~~l~~L~~l~ 150 (205)
.++++|++++|.+++..|..+..+++|++|++++|.+++..|..+..+++|++|++++|.+++ ..|..+..+++|++|+
T Consensus 50 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~ 129 (549)
T 2z81_A 50 ANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLR 129 (549)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEE
T ss_pred CcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEE
Confidence 689999999999998888899999999999999999997777779999999999999999985 3567899999999999
Q ss_pred cccccCCCCCc-hhccCCCCCCeeecccCcCcccCChhhcCCCCCCEEEccCCC
Q 043006 151 LCNNSLTGLIP-NSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNN 203 (205)
Q Consensus 151 l~~n~l~~~~p-~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~N~ 203 (205)
+++|.+.+.+| ..+..+++|++|++++|.+++.+|..++++++|++|++++|.
T Consensus 130 L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 183 (549)
T 2z81_A 130 IGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSE 183 (549)
T ss_dssp EEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSB
T ss_pred CCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCc
Confidence 99998555555 678899999999999999998888877765555555554443
No 88
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.70 E-value=5.7e-17 Score=140.74 Aligned_cols=134 Identities=19% Similarity=0.127 Sum_probs=113.4
Q ss_pred CcEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEc
Q 043006 72 QRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSL 151 (205)
Q Consensus 72 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l 151 (205)
.++++|++++|.+.+..|..+.++++|++|++++|.+++..+..|..+++|++|++++|.+++..|..++++++|++|++
T Consensus 49 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 128 (680)
T 1ziw_A 49 SQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDL 128 (680)
T ss_dssp TTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEEC
T ss_pred CcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEEC
Confidence 67899999999998888888889999999999999998544446889999999999999998666678899999999999
Q ss_pred ccccCCCCCchhccCCCCCCeeecccCcCcccCChhhc--CCCCCCEEEccCCCCC
Q 043006 152 CNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIR--NLSNLFNLNLGYNNLQ 205 (205)
Q Consensus 152 ~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~--~l~~L~~L~ls~N~l~ 205 (205)
++|.+++..|..+..+++|++|++++|.+++..|..+. .+++|+.|++++|.++
T Consensus 129 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~ 184 (680)
T 1ziw_A 129 SHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIK 184 (680)
T ss_dssp CSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCC
T ss_pred CCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCccc
Confidence 99999988888888899999999999999866555554 5678999999988763
No 89
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.70 E-value=1.9e-16 Score=115.02 Aligned_cols=106 Identities=21% Similarity=0.182 Sum_probs=90.3
Q ss_pred EEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEcccc
Q 043006 75 TALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSLCNN 154 (205)
Q Consensus 75 ~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~n 154 (205)
+.++++++.++ .+|..+. +.+++|++++|.+++..|..|..+++|++|++++|++++..+..+..+++|++|++++|
T Consensus 12 ~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 12 TTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 46778888887 4776663 78999999999999777888999999999999999999555566789999999999999
Q ss_pred cCCCCCchhccCCCCCCeeecccCcCccc
Q 043006 155 SLTGLIPNSLFNLSKLEMLDAMFNVIDGS 183 (205)
Q Consensus 155 ~l~~~~p~~~~~l~~L~~L~ls~n~l~~~ 183 (205)
++++..+..+..+++|++|++++|.+...
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 99976666788999999999999998744
No 90
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.69 E-value=1e-16 Score=115.80 Aligned_cols=108 Identities=21% Similarity=0.195 Sum_probs=97.7
Q ss_pred CCCCCEEEccCCccc-cccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEcccccCCCCCchhccCCCCCCee
Q 043006 95 LLFLMSLDLTLNNFH-GHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLEML 173 (205)
Q Consensus 95 l~~L~~L~l~~n~~~-~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L 173 (205)
.++|++|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+++|++|
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 468999999999998 78898889999999999999999854 778999999999999999998788888889999999
Q ss_pred ecccCcCcccCC--hhhcCCCCCCEEEccCCCCC
Q 043006 174 DAMFNVIDGSIP--SGIRNLSNLFNLNLGYNNLQ 205 (205)
Q Consensus 174 ~ls~n~l~~~~p--~~~~~l~~L~~L~ls~N~l~ 205 (205)
++++|.++ .+| ..++.+++|++|++++|.++
T Consensus 101 ~Ls~N~l~-~~~~~~~l~~l~~L~~L~l~~N~l~ 133 (168)
T 2ell_A 101 NLSGNKLK-DISTLEPLKKLECLKSLDLFNCEVT 133 (168)
T ss_dssp ECBSSSCC-SSGGGGGGSSCSCCCEEECCSSGGG
T ss_pred eccCCccC-cchhHHHHhcCCCCCEEEeeCCcCc
Confidence 99999998 444 67899999999999999863
No 91
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.69 E-value=2.1e-17 Score=130.90 Aligned_cols=133 Identities=20% Similarity=0.175 Sum_probs=81.3
Q ss_pred cEEEEEcCCCCccccCCccc--cCCCCCCEEEccCCccccccc----cccCCCCCCcEEEcccCcCCCCCCccccCCCCC
Q 043006 73 RVTALNHLDMGLGGTIPSHL--GNLLFLMSLDLTLNNFHGHLA----HELGQLRRLRFISFTFNKLSGSIPTWIGVLSKL 146 (205)
Q Consensus 73 ~l~~L~l~~~~l~~~~p~~l--~~l~~L~~L~l~~n~~~~~~p----~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L 146 (205)
+++.|++++|.+.+..|..+ ..+++|++|++++|.+++..+ ..+..+++|++|++++|.+++..|..+..+++|
T Consensus 92 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L 171 (310)
T 4glp_A 92 RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPAL 171 (310)
T ss_dssp CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTC
T ss_pred ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCC
Confidence 47777777777777777666 666677777777776665333 223455666666666666665555556666666
Q ss_pred CEEEcccccCCC---------------------------CCch----hccCCCCCCeeecccCcCcccCChhhcCC---C
Q 043006 147 RILSLCNNSLTG---------------------------LIPN----SLFNLSKLEMLDAMFNVIDGSIPSGIRNL---S 192 (205)
Q Consensus 147 ~~l~l~~n~l~~---------------------------~~p~----~~~~l~~L~~L~ls~n~l~~~~p~~~~~l---~ 192 (205)
++|++++|++.+ .+|. .+..+++|++|++++|.+++..|..+..+ +
T Consensus 172 ~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~ 251 (310)
T 4glp_A 172 TSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSS 251 (310)
T ss_dssp CEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCT
T ss_pred CEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcC
Confidence 666666665432 1122 12445667777777777765556655554 4
Q ss_pred CCCEEEccCCCCC
Q 043006 193 NLFNLNLGYNNLQ 205 (205)
Q Consensus 193 ~L~~L~ls~N~l~ 205 (205)
+|++|++++|+|+
T Consensus 252 ~L~~L~Ls~N~l~ 264 (310)
T 4glp_A 252 ALNSLNLSFAGLE 264 (310)
T ss_dssp TCCCEECCSSCCC
T ss_pred cCCEEECCCCCCC
Confidence 7777777777653
No 92
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.69 E-value=3.1e-17 Score=137.67 Aligned_cols=129 Identities=24% Similarity=0.179 Sum_probs=65.1
Q ss_pred CcEEEEEcCCCCccccCCccccCCCCCCEEEccCCcccccccc----------------ccCCCCCCcEEEcccCcCCCC
Q 043006 72 QRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAH----------------ELGQLRRLRFISFTFNKLSGS 135 (205)
Q Consensus 72 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~----------------~~~~l~~L~~L~l~~n~l~~~ 135 (205)
..++.|++++|.+++..| +..+++|++|++++|.+++..+. ....+++|++|++++|.+++.
T Consensus 58 ~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~~N~l~~~~~~~l~~L~~L~L~~N~l~~~ 135 (487)
T 3oja_A 58 TKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITML 135 (487)
T ss_dssp TTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCCCEEECCCSSCEEEECCSSCCCSG
T ss_pred CCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCCCCCcCEEECcCCcCCCCCccccCCCCEEECCCCCCCCC
Confidence 456666666666655443 56666666666666665532110 001123444444444444444
Q ss_pred CCccccCCCCCCEEEcccccCCCCCchhcc-CCCCCCeeecccCcCcccCChhhcCCCCCCEEEccCCCC
Q 043006 136 IPTWIGVLSKLRILSLCNNSLTGLIPNSLF-NLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNL 204 (205)
Q Consensus 136 ~p~~~~~l~~L~~l~l~~n~l~~~~p~~~~-~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l 204 (205)
.|..++.+++|++|++++|.+++..|..+. .+++|+.|++++|.+++. |. ...+++|+.|++++|.|
T Consensus 136 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~Ls~N~l 203 (487)
T 3oja_A 136 RDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKL 203 (487)
T ss_dssp GGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCC
T ss_pred CchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-cc-cccCCCCCEEECCCCCC
Confidence 444455555555555555555554444443 455555555555555533 21 22355555566655554
No 93
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.69 E-value=3e-16 Score=123.29 Aligned_cols=123 Identities=33% Similarity=0.336 Sum_probs=79.5
Q ss_pred CcEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEc
Q 043006 72 QRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSL 151 (205)
Q Consensus 72 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l 151 (205)
.+++.|++++|.+++..+ +..+++|++|++++|.+++ +| .+..+++|++|++++|.+++ + +.+..+++|++|++
T Consensus 68 ~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~~n~i~~-~-~~l~~l~~L~~L~l 141 (291)
T 1h6t_A 68 PNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYL 141 (291)
T ss_dssp TTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTTSCCCC-C-GGGGGCTTCCEEEC
T ss_pred CCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEECCCCcCCC-C-hhhcCCCCCCEEEc
Confidence 567777777777764333 6777777777777777763 33 36667777777777777763 3 34566667777777
Q ss_pred ccccCCCCCchhccCCCCCCeeecccCcCcccCChhhcCCCCCCEEEccCCCC
Q 043006 152 CNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNL 204 (205)
Q Consensus 152 ~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l 204 (205)
++|.+++. ..+..+++|+.|++++|.+++. +. +..+++|+.|++++|.|
T Consensus 142 ~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~-~~-l~~l~~L~~L~L~~N~i 190 (291)
T 1h6t_A 142 GNNKITDI--TVLSRLTKLDTLSLEDNQISDI-VP-LAGLTKLQNLYLSKNHI 190 (291)
T ss_dssp CSSCCCCC--GGGGGCTTCSEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCC
T ss_pred cCCcCCcc--hhhccCCCCCEEEccCCccccc-hh-hcCCCccCEEECCCCcC
Confidence 77766643 3466666666666666666633 32 56666666666666655
No 94
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.68 E-value=1e-16 Score=142.51 Aligned_cols=132 Identities=23% Similarity=0.122 Sum_probs=86.4
Q ss_pred CcEEEEEcCCCCccccC-CccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCcc--ccCCCCCCE
Q 043006 72 QRVTALNHLDMGLGGTI-PSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTW--IGVLSKLRI 148 (205)
Q Consensus 72 ~~l~~L~l~~~~l~~~~-p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~--~~~l~~L~~ 148 (205)
..++.|++++|...+.+ |..+.++++|++|++++|.+++..|..|..+++|++|++++|.+++..|.. +..+++|++
T Consensus 48 ~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~ 127 (844)
T 3j0a_A 48 EQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTR 127 (844)
T ss_dssp CSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCE
T ss_pred ccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCE
Confidence 56677777777555555 556777777777777777777666777777777777777777777655544 667777777
Q ss_pred EEcccccCCCCCc-hhccCCCCCCeeecccCcCcccCChhhcCC--CCCCEEEccCCC
Q 043006 149 LSLCNNSLTGLIP-NSLFNLSKLEMLDAMFNVIDGSIPSGIRNL--SNLFNLNLGYNN 203 (205)
Q Consensus 149 l~l~~n~l~~~~p-~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l--~~L~~L~ls~N~ 203 (205)
|++++|.+++..| ..+..+++|++|++++|.+++..|..+..+ ++|+.|++++|.
T Consensus 128 L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~ 185 (844)
T 3j0a_A 128 LDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANS 185 (844)
T ss_dssp EEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSB
T ss_pred EECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCc
Confidence 7777777765543 456777777777777777765555555443 444444444443
No 95
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.68 E-value=4.7e-16 Score=120.51 Aligned_cols=122 Identities=25% Similarity=0.237 Sum_probs=88.7
Q ss_pred CcEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEc
Q 043006 72 QRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSL 151 (205)
Q Consensus 72 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l 151 (205)
.+++.|++++|.+.+. ++ +..+++|++|++++|.+++ +|.. .. ++|++|++++|.+++ ++ .+..+++|++|++
T Consensus 63 ~~L~~L~L~~N~i~~~-~~-l~~l~~L~~L~L~~N~l~~-l~~~-~~-~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~L 135 (263)
T 1xeu_A 63 TNLKELHLSHNQISDL-SP-LKDLTKLEELSVNRNRLKN-LNGI-PS-ACLSRLFLDNNELRD-TD-SLIHLKNLEILSI 135 (263)
T ss_dssp TTCCEEECCSSCCCCC-GG-GTTCSSCCEEECCSSCCSC-CTTC-CC-SSCCEEECCSSCCSB-SG-GGTTCTTCCEEEC
T ss_pred CCCCEEECCCCccCCC-hh-hccCCCCCEEECCCCccCC-cCcc-cc-CcccEEEccCCccCC-Ch-hhcCcccccEEEC
Confidence 5677888888877743 33 7777888888888888774 4432 22 778888888888773 33 4777888888888
Q ss_pred ccccCCCCCchhccCCCCCCeeecccCcCcccCChhhcCCCCCCEEEccCCCC
Q 043006 152 CNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNL 204 (205)
Q Consensus 152 ~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l 204 (205)
++|++++. | .+..+++|+.|++++|.+++. ..+..+++|+.|++++|.+
T Consensus 136 s~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~ 184 (263)
T 1xeu_A 136 RNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKC 184 (263)
T ss_dssp TTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEE
T ss_pred CCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcc
Confidence 88888754 4 577788888888888888744 5577788888888888764
No 96
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.68 E-value=4.9e-16 Score=123.01 Aligned_cols=122 Identities=29% Similarity=0.421 Sum_probs=56.2
Q ss_pred cEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEcc
Q 043006 73 RVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSLC 152 (205)
Q Consensus 73 ~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~ 152 (205)
+++.|++++|.+.+ ++ .+..+++|++|++++|.+++ ++. +..+++|++|++++|.+++ ++. +..+++|++|+++
T Consensus 86 ~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~ 159 (308)
T 1h6u_A 86 KITELELSGNPLKN-VS-AIAGLQSIKTLDLTSTQITD-VTP-LAGLSNLQVLYLDLNQITN-ISP-LAGLTNLQYLSIG 159 (308)
T ss_dssp SCCEEECCSCCCSC-CG-GGTTCTTCCEEECTTSCCCC-CGG-GTTCTTCCEEECCSSCCCC-CGG-GGGCTTCCEEECC
T ss_pred CCCEEEccCCcCCC-ch-hhcCCCCCCEEECCCCCCCC-chh-hcCCCCCCEEECCCCccCc-Ccc-ccCCCCccEEEcc
Confidence 34444444444432 11 24444444444444444442 221 4444444555555444442 222 4445555555555
Q ss_pred cccCCCCCchhccCCCCCCeeecccCcCcccCChhhcCCCCCCEEEccCCCC
Q 043006 153 NNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNL 204 (205)
Q Consensus 153 ~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l 204 (205)
+|.+++. +. +..+++|+.|++++|.++ .++. +..+++|++|++++|++
T Consensus 160 ~n~l~~~-~~-l~~l~~L~~L~l~~n~l~-~~~~-l~~l~~L~~L~L~~N~l 207 (308)
T 1h6u_A 160 NAQVSDL-TP-LANLSKLTTLKADDNKIS-DISP-LASLPNLIEVHLKNNQI 207 (308)
T ss_dssp SSCCCCC-GG-GTTCTTCCEEECCSSCCC-CCGG-GGGCTTCCEEECTTSCC
T ss_pred CCcCCCC-hh-hcCCCCCCEEECCCCccC-cChh-hcCCCCCCEEEccCCcc
Confidence 5555532 22 455555555555555555 2222 45555556666655554
No 97
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.68 E-value=4.2e-16 Score=113.58 Aligned_cols=108 Identities=22% Similarity=0.189 Sum_probs=91.3
Q ss_pred EEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEcccc
Q 043006 75 TALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSLCNN 154 (205)
Q Consensus 75 ~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~n 154 (205)
+.++++++.++ .+|..+. +.|++|++++|.+++..|..|..+++|++|++++|++++..+..+..+++|++|++++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 57889999886 6787665 78999999999999877888999999999999999999544455789999999999999
Q ss_pred cCCCCCchhccCCCCCCeeecccCcCcccCCh
Q 043006 155 SLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPS 186 (205)
Q Consensus 155 ~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~ 186 (205)
++++..+..+..+++|++|++++|.+. ..+.
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~-c~~~ 122 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWD-CECR 122 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBC-TTBG
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcc-cccc
Confidence 999665556889999999999999998 3443
No 98
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.68 E-value=6.9e-17 Score=123.20 Aligned_cols=132 Identities=17% Similarity=0.087 Sum_probs=67.3
Q ss_pred CcEEEEEcCCCC-ccccCCccccCCCCCCEEEccC-CccccccccccCCCCCCcEEEcccCcCC----------------
Q 043006 72 QRVTALNHLDMG-LGGTIPSHLGNLLFLMSLDLTL-NNFHGHLAHELGQLRRLRFISFTFNKLS---------------- 133 (205)
Q Consensus 72 ~~l~~L~l~~~~-l~~~~p~~l~~l~~L~~L~l~~-n~~~~~~p~~~~~l~~L~~L~l~~n~l~---------------- 133 (205)
.+++.|++++|. +++..+..+..+++|++|++++ |.+++..+..|..+++|++|++++|.++
T Consensus 55 ~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~lp~~~~l~~L~~L~~ 134 (239)
T 2xwt_C 55 PNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFI 134 (239)
T ss_dssp TTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCSCCCCTTCCBCCSEEE
T ss_pred CCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCccccccccccccccccE
Confidence 345555555554 4433333455555555555555 5555333334445555555555555444
Q ss_pred ----------CCCCccccCCCCCC-EEEcccccCCCCCchhccCCCCCCeeecccCc-CcccCChhhcCC-CCCCEEEcc
Q 043006 134 ----------GSIPTWIGVLSKLR-ILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNV-IDGSIPSGIRNL-SNLFNLNLG 200 (205)
Q Consensus 134 ----------~~~p~~~~~l~~L~-~l~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~-l~~~~p~~~~~l-~~L~~L~ls 200 (205)
+..+..+..+++|+ ++++++|.++ .+|......++|+.|++++|. +++..+..+..+ ++|+.|+++
T Consensus 135 L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~ 213 (239)
T 2xwt_C 135 LEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVS 213 (239)
T ss_dssp EEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECT
T ss_pred EECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECC
Confidence 22223345555555 5555555555 333332223556666666663 553333445566 666666666
Q ss_pred CCCC
Q 043006 201 YNNL 204 (205)
Q Consensus 201 ~N~l 204 (205)
+|++
T Consensus 214 ~N~l 217 (239)
T 2xwt_C 214 QTSV 217 (239)
T ss_dssp TCCC
T ss_pred CCcc
Confidence 6655
No 99
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.68 E-value=2.1e-16 Score=134.89 Aligned_cols=122 Identities=25% Similarity=0.264 Sum_probs=108.1
Q ss_pred cEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEcc
Q 043006 73 RVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSLC 152 (205)
Q Consensus 73 ~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~ 152 (205)
.++.|++++|.+++ +|. +..+++|++|++++|.++ .+|..++.+++|++|++++|.+++ +| .++.+++|++|+++
T Consensus 442 ~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls 516 (567)
T 1dce_A 442 DVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLC 516 (567)
T ss_dssp TCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECC
T ss_pred CceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECC
Confidence 47889999999986 676 999999999999999999 889999999999999999999994 77 89999999999999
Q ss_pred cccCCCCC-chhccCCCCCCeeecccCcCcccCCh---hhcCCCCCCEEEc
Q 043006 153 NNSLTGLI-PNSLFNLSKLEMLDAMFNVIDGSIPS---GIRNLSNLFNLNL 199 (205)
Q Consensus 153 ~n~l~~~~-p~~~~~l~~L~~L~ls~n~l~~~~p~---~~~~l~~L~~L~l 199 (205)
+|.+++.. |..+..+++|+.|++++|.+++..|. .+..+++|+.|++
T Consensus 517 ~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 517 NNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp SSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 99999876 99999999999999999999965442 2345889999875
No 100
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.67 E-value=1.7e-16 Score=135.25 Aligned_cols=132 Identities=23% Similarity=0.322 Sum_probs=79.7
Q ss_pred CCCCCCCCC-----cccce-eeCCCCCcEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEE
Q 043006 52 NWAMSSPIC-----NWIGI-SCGLPHQRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFI 125 (205)
Q Consensus 52 ~w~~~~~~c-----~w~gv-~c~~~~~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L 125 (205)
+|.....+| .|.|+ .|.. .+++.|++++|.+++ +|..+. ++|++|++++|.++ .+| ..+++|++|
T Consensus 35 ~W~~~~~~~~~~~~~~~~l~~C~~--~~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~-~ip---~~l~~L~~L 105 (571)
T 3cvr_A 35 KWEKQALPGENRNEAVSLLKECLI--NQFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALI-SLP---ELPASLEYL 105 (571)
T ss_dssp HHHTTCCTTCCHHHHHHHHHHHHH--TTCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCS-CCC---CCCTTCCEE
T ss_pred HHhccCCccccccchhhhcccccc--CCccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCc-ccc---cccCCCCEE
Confidence 344444556 68888 6753 468888888888875 666553 56777777777776 566 345677777
Q ss_pred EcccCcCCCCCCccccCCCCCCEEEcccccCCCCCchhccCCCCCCeeecccCcCcccCChhhcCCCCCCEEEccCCCC
Q 043006 126 SFTFNKLSGSIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNL 204 (205)
Q Consensus 126 ~l~~n~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l 204 (205)
++++|.+++ +|. +.. +|++|++++|.+++ +|. .+++|+.|++++|.+++ +|. .+++|++|++++|.|
T Consensus 106 ~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L 172 (571)
T 3cvr_A 106 DACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQL 172 (571)
T ss_dssp ECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCC
T ss_pred EccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCC
Confidence 777777763 555 433 66666666666664 443 34555555555555552 443 334445555554443
No 101
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.67 E-value=3.2e-16 Score=125.52 Aligned_cols=126 Identities=23% Similarity=0.272 Sum_probs=94.5
Q ss_pred CcEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEc
Q 043006 72 QRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSL 151 (205)
Q Consensus 72 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l 151 (205)
.+++.|++++|.+++. ++ +..+++|++|++++|.+++ + ..+..+++|++|++++|.+++ + +.+..+++|++|++
T Consensus 221 ~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~L 294 (347)
T 4fmz_A 221 TRLNSLKIGNNKITDL-SP-LANLSQLTWLEIGTNQISD-I-NAVKDLTKLKMLNVGSNQISD-I-SVLNNLSQLNSLFL 294 (347)
T ss_dssp TTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEEC
T ss_pred CcCCEEEccCCccCCC-cc-hhcCCCCCEEECCCCccCC-C-hhHhcCCCcCEEEccCCccCC-C-hhhcCCCCCCEEEC
Confidence 5677777877777643 33 7777888888888888774 3 356778888888888888874 3 34777888888888
Q ss_pred ccccCCCCCchhccCCCCCCeeecccCcCcccCChhhcCCCCCCEEEccCCCCC
Q 043006 152 CNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNLQ 205 (205)
Q Consensus 152 ~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~ 205 (205)
++|.+++..|..+..+++|++|++++|.+++..| +..+++|+.|++++|.|+
T Consensus 295 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 295 NNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp CSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred cCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 8888887777778888888888888888885444 778888888888888774
No 102
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.67 E-value=1.1e-15 Score=121.07 Aligned_cols=124 Identities=22% Similarity=0.337 Sum_probs=92.9
Q ss_pred CcEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEc
Q 043006 72 QRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSL 151 (205)
Q Consensus 72 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l 151 (205)
.+++.|++++|.+.+. ++ +..+++|++|++++|.+++ ++ .+..+++|++|++++|.+++ ++. +..+++|++|++
T Consensus 63 ~~L~~L~L~~n~i~~~-~~-~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l 136 (308)
T 1h6u_A 63 NNLIGLELKDNQITDL-AP-LKNLTKITELELSGNPLKN-VS-AIAGLQSIKTLDLTSTQITD-VTP-LAGLSNLQVLYL 136 (308)
T ss_dssp TTCCEEECCSSCCCCC-GG-GTTCCSCCEEECCSCCCSC-CG-GGTTCTTCCEEECTTSCCCC-CGG-GTTCTTCCEEEC
T ss_pred CCCCEEEccCCcCCCC-hh-HccCCCCCEEEccCCcCCC-ch-hhcCCCCCCEEECCCCCCCC-chh-hcCCCCCCEEEC
Confidence 5678888888887743 33 7778888888888888774 34 57778888888888888873 443 778888888888
Q ss_pred ccccCCCCCchhccCCCCCCeeecccCcCcccCChhhcCCCCCCEEEccCCCCC
Q 043006 152 CNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNLQ 205 (205)
Q Consensus 152 ~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~ 205 (205)
++|.+++. +. +..+++|+.|++++|.++ .++. +.++++|+.|++++|.++
T Consensus 137 ~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~-~~~~-l~~l~~L~~L~l~~n~l~ 186 (308)
T 1h6u_A 137 DLNQITNI-SP-LAGLTNLQYLSIGNAQVS-DLTP-LANLSKLTTLKADDNKIS 186 (308)
T ss_dssp CSSCCCCC-GG-GGGCTTCCEEECCSSCCC-CCGG-GTTCTTCCEEECCSSCCC
T ss_pred CCCccCcC-cc-ccCCCCccEEEccCCcCC-CChh-hcCCCCCCEEECCCCccC
Confidence 88888754 33 777888888888888887 3444 778888888888888763
No 103
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.65 E-value=1.7e-15 Score=118.95 Aligned_cols=124 Identities=24% Similarity=0.294 Sum_probs=108.2
Q ss_pred CcEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEc
Q 043006 72 QRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSL 151 (205)
Q Consensus 72 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l 151 (205)
.+++.|+++++.+.. ++ .+..+++|++|++++|.+++. +. +..+++|++|++++|.+++ +| .+..+++|++|++
T Consensus 46 ~~L~~L~l~~~~i~~-~~-~~~~l~~L~~L~L~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L 119 (291)
T 1h6t_A 46 NSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDI-KP-LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSL 119 (291)
T ss_dssp HTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEEC
T ss_pred CcccEEEccCCCccc-Ch-hHhcCCCCCEEEccCCccCCC-cc-cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEEC
Confidence 568999999999874 44 488899999999999999854 44 8999999999999999984 44 4899999999999
Q ss_pred ccccCCCCCchhccCCCCCCeeecccCcCcccCChhhcCCCCCCEEEccCCCCC
Q 043006 152 CNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNLQ 205 (205)
Q Consensus 152 ~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~ 205 (205)
++|++++. ..+..+++|+.|++++|.+++ + ..++.+++|++|++++|.++
T Consensus 120 ~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~N~l~ 169 (291)
T 1h6t_A 120 EHNGISDI--NGLVHLPQLESLYLGNNKITD-I-TVLSRLTKLDTLSLEDNQIS 169 (291)
T ss_dssp TTSCCCCC--GGGGGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCC
T ss_pred CCCcCCCC--hhhcCCCCCCEEEccCCcCCc-c-hhhccCCCCCEEEccCCccc
Confidence 99999964 468899999999999999984 4 56899999999999999874
No 104
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.65 E-value=7.6e-16 Score=119.37 Aligned_cols=123 Identities=27% Similarity=0.272 Sum_probs=106.6
Q ss_pred CcEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEc
Q 043006 72 QRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSL 151 (205)
Q Consensus 72 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l 151 (205)
.+++.|++++|.+. .+| .+..+++|++|++++|.+++ ++. +..+++|++|++++|.++ .+|... . ++|++|++
T Consensus 41 ~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~-~~~-l~~l~~L~~L~L~~N~l~-~l~~~~-~-~~L~~L~L 113 (263)
T 1xeu_A 41 SGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISD-LSP-LKDLTKLEELSVNRNRLK-NLNGIP-S-ACLSRLFL 113 (263)
T ss_dssp TTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCSSCCEEECCSSCCS-CCTTCC-C-SSCCEEEC
T ss_pred CcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCC-Chh-hccCCCCCEEECCCCccC-CcCccc-c-CcccEEEc
Confidence 67899999999997 455 68899999999999999995 444 899999999999999999 455433 3 99999999
Q ss_pred ccccCCCCCchhccCCCCCCeeecccCcCcccCChhhcCCCCCCEEEccCCCCC
Q 043006 152 CNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNLQ 205 (205)
Q Consensus 152 ~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~ 205 (205)
++|.+++. + .+..+++|+.|++++|++++ +| .++.+++|++|++++|+++
T Consensus 114 ~~N~l~~~-~-~l~~l~~L~~L~Ls~N~i~~-~~-~l~~l~~L~~L~L~~N~i~ 163 (263)
T 1xeu_A 114 DNNELRDT-D-SLIHLKNLEILSIRNNKLKS-IV-MLGFLSKLEVLDLHGNEIT 163 (263)
T ss_dssp CSSCCSBS-G-GGTTCTTCCEEECTTSCCCB-CG-GGGGCTTCCEEECTTSCCC
T ss_pred cCCccCCC-h-hhcCcccccEEECCCCcCCC-Ch-HHccCCCCCEEECCCCcCc
Confidence 99999964 4 58899999999999999984 55 6889999999999999874
No 105
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.65 E-value=1.9e-17 Score=144.99 Aligned_cols=113 Identities=25% Similarity=0.340 Sum_probs=105.8
Q ss_pred CcEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEc
Q 043006 72 QRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSL 151 (205)
Q Consensus 72 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l 151 (205)
..++.|++++|.+. .+|..+..+++|++|+|++|.++ .+|..+..+++|++|++++|.++ .+|..++.+++|++|+|
T Consensus 224 ~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L 300 (727)
T 4b8c_D 224 QLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYF 300 (727)
T ss_dssp CCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEEC
T ss_pred CCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEEC
Confidence 67899999999998 78888899999999999999999 89999999999999999999999 88999999999999999
Q ss_pred ccccCCCCCchhccCCCCCCeeecccCcCcccCChhh
Q 043006 152 CNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGI 188 (205)
Q Consensus 152 ~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~ 188 (205)
++|.++ .+|..|+.+++|+.|++++|.+++.+|..+
T Consensus 301 ~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~ 336 (727)
T 4b8c_D 301 FDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKIL 336 (727)
T ss_dssp CSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHH
T ss_pred CCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHH
Confidence 999998 788889999999999999999998877655
No 106
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.65 E-value=1.5e-15 Score=130.50 Aligned_cols=123 Identities=33% Similarity=0.366 Sum_probs=63.7
Q ss_pred CcEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEc
Q 043006 72 QRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSL 151 (205)
Q Consensus 72 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l 151 (205)
.+++.|++++|.+.+..| +..+++|++|++++|.+++ +| .+..+++|++|++++|.+++ + +.+..+++|+.|++
T Consensus 65 ~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~L 138 (605)
T 1m9s_A 65 PNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYL 138 (605)
T ss_dssp TTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEECTTSCCCC-C-GGGGGCTTCSEEEC
T ss_pred CCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEEecCCCCCC-C-ccccCCCccCEEEC
Confidence 456666666666654322 5555666666666665552 22 35555555555555555552 2 23445555555555
Q ss_pred ccccCCCCCchhccCCCCCCeeecccCcCcccCChhhcCCCCCCEEEccCCCC
Q 043006 152 CNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNL 204 (205)
Q Consensus 152 ~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l 204 (205)
++|.+++. ..+..+++|+.|++++|.+.+..| +..+++|+.|+|++|.|
T Consensus 139 s~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i 187 (605)
T 1m9s_A 139 GNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI 187 (605)
T ss_dssp CSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred CCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCC
Confidence 55555533 334455555555555555543322 44455555555555544
No 107
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.65 E-value=3.8e-16 Score=124.00 Aligned_cols=128 Identities=15% Similarity=0.118 Sum_probs=99.6
Q ss_pred CcEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccc-cCCCCCCEEE
Q 043006 72 QRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWI-GVLSKLRILS 150 (205)
Q Consensus 72 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~-~~l~~L~~l~ 150 (205)
..++.|++++|.+.+..+. .+++|++|++++|.+++..+..+..+++|++|++++|.+++..|..+ ..+++|++|+
T Consensus 99 ~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~ 175 (317)
T 3o53_A 99 PSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLN 175 (317)
T ss_dssp TTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEE
T ss_pred CCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEE
Confidence 3445555555555543332 35678889999999887667778888999999999999986666666 4789999999
Q ss_pred cccccCCCCCchhccCCCCCCeeecccCcCcccCChhhcCCCCCCEEEccCCCCC
Q 043006 151 LCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNLQ 205 (205)
Q Consensus 151 l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~ 205 (205)
+++|.+++. |. ...+++|++|++++|.++ .+|..+..+++|+.|++++|.|+
T Consensus 176 L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~L~~N~l~ 227 (317)
T 3o53_A 176 LQYNFIYDV-KG-QVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV 227 (317)
T ss_dssp CTTSCCCEE-EC-CCCCTTCCEEECCSSCCC-EECGGGGGGTTCSEEECTTSCCC
T ss_pred CCCCcCccc-cc-ccccccCCEEECCCCcCC-cchhhhcccCcccEEECcCCccc
Confidence 999999854 43 335899999999999998 56777889999999999999874
No 108
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.64 E-value=1.4e-15 Score=110.36 Aligned_cols=85 Identities=24% Similarity=0.178 Sum_probs=42.3
Q ss_pred cEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEcc
Q 043006 73 RVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSLC 152 (205)
Q Consensus 73 ~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~ 152 (205)
.++.|++++|.+++..|..+..+++|++|++++|++++..+..|..+++|++|++++|++++..+..+..+++|++|+++
T Consensus 31 ~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 110 (170)
T 3g39_A 31 TTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLL 110 (170)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeC
Confidence 34455555555554444445555555555555555553333334455555555555555553333334555555555555
Q ss_pred cccCC
Q 043006 153 NNSLT 157 (205)
Q Consensus 153 ~n~l~ 157 (205)
+|+++
T Consensus 111 ~N~~~ 115 (170)
T 3g39_A 111 NNPWD 115 (170)
T ss_dssp SSCBC
T ss_pred CCCCC
Confidence 55554
No 109
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.63 E-value=3.5e-15 Score=108.67 Aligned_cols=103 Identities=17% Similarity=0.145 Sum_probs=62.6
Q ss_pred CEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEcccccCCCCCchhccCCCCCCeeecccC
Q 043006 99 MSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFN 178 (205)
Q Consensus 99 ~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~ls~n 178 (205)
+.+++++|.++ .+|..+. ++|++|++++|.+++..|..+..+++|++|++++|++++..+..|..+++|++|++++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 45666666664 5555443 56666666666666555556666666666666666666544444556666666666666
Q ss_pred cCcccCChhhcCCCCCCEEEccCCCC
Q 043006 179 VIDGSIPSGIRNLSNLFNLNLGYNNL 204 (205)
Q Consensus 179 ~l~~~~p~~~~~l~~L~~L~ls~N~l 204 (205)
++++..+..+.++++|++|++++|++
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~ 117 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPW 117 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCB
T ss_pred ccceeCHHHhccccCCCEEEeCCCCc
Confidence 66633233366666666666666654
No 110
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.62 E-value=3.6e-15 Score=119.39 Aligned_cols=126 Identities=25% Similarity=0.316 Sum_probs=97.0
Q ss_pred CcEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEc
Q 043006 72 QRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSL 151 (205)
Q Consensus 72 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l 151 (205)
..++.+++++|.+.+..+ +..+++|++|++++|.+++ ++. +..+++|++|++++|.+++ + +.+..+++|++|++
T Consensus 199 ~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~l 272 (347)
T 4fmz_A 199 TSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITD-LSP-LANLSQLTWLEIGTNQISD-I-NAVKDLTKLKMLNV 272 (347)
T ss_dssp TTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCCEEEC
T ss_pred CccceeecccCCCCCCch--hhcCCcCCEEEccCCccCC-Ccc-hhcCCCCCEEECCCCccCC-C-hhHhcCCCcCEEEc
Confidence 345555555555543322 6677788888888888874 343 7788888888888888874 3 45788889999999
Q ss_pred ccccCCCCCchhccCCCCCCeeecccCcCcccCChhhcCCCCCCEEEccCCCCC
Q 043006 152 CNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNLQ 205 (205)
Q Consensus 152 ~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~ 205 (205)
++|.+++. | .+..+++|+.|++++|.+++..|..++.+++|++|++++|+++
T Consensus 273 ~~n~l~~~-~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 324 (347)
T 4fmz_A 273 GSNQISDI-S-VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHIT 324 (347)
T ss_dssp CSSCCCCC-G-GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCC
T ss_pred cCCccCCC-h-hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccc
Confidence 99988854 3 5788899999999999998777888899999999999999874
No 111
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.62 E-value=1.7e-15 Score=129.31 Aligned_cols=104 Identities=26% Similarity=0.324 Sum_probs=96.5
Q ss_pred CCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEcccccCCCCCchhccCCCCCCeeecc
Q 043006 97 FLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAM 176 (205)
Q Consensus 97 ~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~ls 176 (205)
.|++|++++|.+++ +|. ++.+++|+.|++++|.++ .+|..++.+++|++|++++|.+++ +| .+..+++|+.|+++
T Consensus 442 ~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls 516 (567)
T 1dce_A 442 DVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLC 516 (567)
T ss_dssp TCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECC
T ss_pred CceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECC
Confidence 57789999999995 776 999999999999999999 899999999999999999999996 67 79999999999999
Q ss_pred cCcCcccC-ChhhcCCCCCCEEEccCCCCC
Q 043006 177 FNVIDGSI-PSGIRNLSNLFNLNLGYNNLQ 205 (205)
Q Consensus 177 ~n~l~~~~-p~~~~~l~~L~~L~ls~N~l~ 205 (205)
+|.+++.. |..++.+++|+.|++++|+|+
T Consensus 517 ~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~ 546 (567)
T 1dce_A 517 NNRLQQSAAIQPLVSCPRLVLLNLQGNSLC 546 (567)
T ss_dssp SSCCCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred CCCCCCCCCcHHHhcCCCCCEEEecCCcCC
Confidence 99999666 999999999999999999873
No 112
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.61 E-value=2.5e-18 Score=127.75 Aligned_cols=122 Identities=23% Similarity=0.240 Sum_probs=85.2
Q ss_pred CcEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEc
Q 043006 72 QRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSL 151 (205)
Q Consensus 72 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l 151 (205)
..++.|++++|.+.+ +| .+..+++|++|++++|.++ .+|..+..+++|++|++++|.+++ +| .+..+++|++|++
T Consensus 48 ~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l 122 (198)
T 1ds9_A 48 KACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYM 122 (198)
T ss_dssp TTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEE
T ss_pred CCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEEC
Confidence 467777777777765 55 6777777777777777777 566666666777777777777773 44 5667777777777
Q ss_pred ccccCCCCCc-hhccCCCCCCeeecccCcCcccCChh----------hcCCCCCCEEE
Q 043006 152 CNNSLTGLIP-NSLFNLSKLEMLDAMFNVIDGSIPSG----------IRNLSNLFNLN 198 (205)
Q Consensus 152 ~~n~l~~~~p-~~~~~l~~L~~L~ls~n~l~~~~p~~----------~~~l~~L~~L~ 198 (205)
++|.+++..+ ..+..+++|++|++++|.+.+.+|.. +..+++|+.||
T Consensus 123 ~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 123 SNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp SEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred CCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 7777774222 35677777777887777776554432 56777777776
No 113
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.61 E-value=4.7e-15 Score=127.36 Aligned_cols=123 Identities=28% Similarity=0.296 Sum_probs=109.2
Q ss_pred CcEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEc
Q 043006 72 QRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSL 151 (205)
Q Consensus 72 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l 151 (205)
.+++.|++++|.+.+ +| .+..+++|++|++++|.+++ ++ .+..+++|+.|++++|.+++. ..+..+++|+.|++
T Consensus 87 ~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~L 160 (605)
T 1m9s_A 87 KNLGWLFLDENKIKD-LS-SLKDLKKLKSLSLEHNGISD-IN-GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSL 160 (605)
T ss_dssp TTCCEEECCSSCCCC-CT-TSTTCTTCCEEECTTSCCCC-CG-GGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEEC
T ss_pred CCCCEEECcCCCCCC-Ch-hhccCCCCCEEEecCCCCCC-Cc-cccCCCccCEEECCCCccCCc--hhhcccCCCCEEEC
Confidence 689999999999985 34 68999999999999999985 44 588999999999999999954 67899999999999
Q ss_pred ccccCCCCCchhccCCCCCCeeecccCcCcccCChhhcCCCCCCEEEccCCCC
Q 043006 152 CNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNL 204 (205)
Q Consensus 152 ~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l 204 (205)
++|.+++..| +..+++|+.|++++|.+++ +| .+..+++|+.|++++|++
T Consensus 161 s~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~L~~N~l 209 (605)
T 1m9s_A 161 EDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQEC 209 (605)
T ss_dssp CSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEECCSEEE
T ss_pred cCCcCCCchh--hccCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEccCCcC
Confidence 9999997766 8999999999999999984 44 589999999999999975
No 114
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.60 E-value=2.1e-15 Score=109.81 Aligned_cols=110 Identities=20% Similarity=0.161 Sum_probs=94.0
Q ss_pred cccCCCCCCEEEccCCccccccccccCCCC-CCcEEEcccCcCCCCCCccccCCCCCCEEEcccccCCCCCchhccCCCC
Q 043006 91 HLGNLLFLMSLDLTLNNFHGHLAHELGQLR-RLRFISFTFNKLSGSIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSK 169 (205)
Q Consensus 91 ~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~-~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~~~~l~~ 169 (205)
.+.....|++|++++|.++ .+|. +..+. +|++|++++|.+++. +.+..+++|++|++++|.+++..|..+..+++
T Consensus 14 ~~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 89 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPD 89 (176)
T ss_dssp EEECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred hcCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCC
Confidence 4566789999999999998 4564 45554 999999999999954 67899999999999999999654455689999
Q ss_pred CCeeecccCcCcccCCh--hhcCCCCCCEEEccCCCCC
Q 043006 170 LEMLDAMFNVIDGSIPS--GIRNLSNLFNLNLGYNNLQ 205 (205)
Q Consensus 170 L~~L~ls~n~l~~~~p~--~~~~l~~L~~L~ls~N~l~ 205 (205)
|++|++++|.+. .+|. .++.+++|+.|++++|+++
T Consensus 90 L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~ 126 (176)
T 1a9n_A 90 LTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT 126 (176)
T ss_dssp CCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG
T ss_pred CCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC
Confidence 999999999996 7776 7889999999999999863
No 115
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.60 E-value=5.8e-15 Score=125.81 Aligned_cols=118 Identities=25% Similarity=0.279 Sum_probs=72.3
Q ss_pred CcEEEEEcCCCCccccCCccccCCCCCCEEEccCCcccc-------------------ccccccCCCCCCcEEEcccCcC
Q 043006 72 QRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHG-------------------HLAHELGQLRRLRFISFTFNKL 132 (205)
Q Consensus 72 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~-------------------~~p~~~~~l~~L~~L~l~~n~l 132 (205)
.+++.|++++|.+++ +|. +.. +|++|++++|.+++ .+|. .+++|++|++++|.+
T Consensus 100 ~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~lp~~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L 172 (571)
T 3cvr_A 100 ASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTMLPELPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQL 172 (571)
T ss_dssp TTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCC
T ss_pred CCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCCCCCcCccccEEeCCCCccCcCCC---cCCCcCEEECCCCCC
Confidence 455666666666654 444 332 45555555555443 1332 345566666666666
Q ss_pred CCCCCccccCCCCCCEEEcccccCCCCCchhccCCCCC-------CeeecccCcCcccCChhhcCCCCCCEEEccCCCCC
Q 043006 133 SGSIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKL-------EMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNLQ 205 (205)
Q Consensus 133 ~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~~~~l~~L-------~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~ 205 (205)
++ +|. +. ++|++|++++|.++ .+|. +.. +| +.|++++|.++ .+|..+.++++|+.|++++|+|+
T Consensus 173 ~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~ 243 (571)
T 3cvr_A 173 TF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLS 243 (571)
T ss_dssp SC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCC
T ss_pred CC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCC
Confidence 53 555 43 66777777777777 5555 433 56 88888888887 67887777888888888888874
No 116
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.60 E-value=9.6e-15 Score=121.67 Aligned_cols=122 Identities=27% Similarity=0.337 Sum_probs=54.9
Q ss_pred cEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEcc
Q 043006 73 RVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSLC 152 (205)
Q Consensus 73 ~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~ 152 (205)
+++.|++++|.+.+..| +..+++|++|++++|.+++..+ +..+++|++|++++|.+++. +. +..+++|++|+++
T Consensus 244 ~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~-~~-~~~l~~L~~L~L~ 317 (466)
T 1o6v_A 244 NLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDI-SP-ISNLKNLTYLTLY 317 (466)
T ss_dssp TCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCC-GG-GGGCTTCSEEECC
T ss_pred CCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCc-hh-hcCCCCCCEEECc
Confidence 34444444444443222 4444445555555554443222 44444555555555554422 21 4444555555555
Q ss_pred cccCCCCCchhccCCCCCCeeecccCcCcccCChhhcCCCCCCEEEccCCCC
Q 043006 153 NNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNL 204 (205)
Q Consensus 153 ~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l 204 (205)
+|.+++..| +..+++|+.|++++|.+++. ..+.++++|+.|++++|++
T Consensus 318 ~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l 365 (466)
T 1o6v_A 318 FNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQI 365 (466)
T ss_dssp SSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCC
T ss_pred CCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCcc
Confidence 555544332 34444444444444444422 2344445555555555443
No 117
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.60 E-value=5.7e-15 Score=123.04 Aligned_cols=123 Identities=28% Similarity=0.430 Sum_probs=108.7
Q ss_pred CcEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEc
Q 043006 72 QRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSL 151 (205)
Q Consensus 72 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l 151 (205)
..++.|++++|.+.+..+ +..+++|++|++++|.+++..+ +..+++|++|++++|.+++..| +..+++|++|++
T Consensus 265 ~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l 338 (466)
T 1o6v_A 265 TKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFF 338 (466)
T ss_dssp TTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEEC
T ss_pred CCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeEC
Confidence 679999999999986443 8899999999999999986444 7889999999999999996655 789999999999
Q ss_pred ccccCCCCCchhccCCCCCCeeecccCcCcccCChhhcCCCCCCEEEccCCCC
Q 043006 152 CNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNL 204 (205)
Q Consensus 152 ~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l 204 (205)
++|.+++. ..+..+++|+.|++++|++++..| +.++++|+.|++++|.+
T Consensus 339 ~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~ 387 (466)
T 1o6v_A 339 YNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAW 387 (466)
T ss_dssp CSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEE
T ss_pred CCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcc
Confidence 99999965 468899999999999999997766 88999999999999975
No 118
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.59 E-value=1e-16 Score=127.87 Aligned_cols=58 Identities=14% Similarity=0.095 Sum_probs=24.9
Q ss_pred cEEEEEcCCCCcccc-CCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccC
Q 043006 73 RVTALNHLDMGLGGT-IPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFN 130 (205)
Q Consensus 73 ~l~~L~l~~~~l~~~-~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n 130 (205)
+++.|++++|.+.+. +|..+..+++|++|++++|.+++..+..+..+++|++|++++|
T Consensus 94 ~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~ 152 (336)
T 2ast_B 94 RVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGC 152 (336)
T ss_dssp CCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTC
T ss_pred CCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCC
Confidence 344444444444332 3333444444444444444444333334444444444444444
No 119
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.58 E-value=4.7e-16 Score=123.95 Aligned_cols=130 Identities=19% Similarity=0.160 Sum_probs=109.2
Q ss_pred CcEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccc-cccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEE
Q 043006 72 QRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGH-LAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILS 150 (205)
Q Consensus 72 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~-~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~ 150 (205)
..++.++++++.+.+..+. +..+++|++|++++|.+++. +|..+..+++|++|++++|.+++..|..+..+++|++|+
T Consensus 70 ~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~ 148 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN 148 (336)
T ss_dssp TTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEE
T ss_pred ccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEE
Confidence 5678888998888866554 66789999999999999865 787888999999999999999878888888999999999
Q ss_pred cccc-cCCC-CCchhccCCCCCCeeecccC-cCccc-CChhhcCCC-CCCEEEccCC
Q 043006 151 LCNN-SLTG-LIPNSLFNLSKLEMLDAMFN-VIDGS-IPSGIRNLS-NLFNLNLGYN 202 (205)
Q Consensus 151 l~~n-~l~~-~~p~~~~~l~~L~~L~ls~n-~l~~~-~p~~~~~l~-~L~~L~ls~N 202 (205)
+++| .+++ .+|..+..+++|++|++++| .+++. ++..+.+++ +|++|++++|
T Consensus 149 L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~ 205 (336)
T 2ast_B 149 LSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGY 205 (336)
T ss_dssp CTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSC
T ss_pred CCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCC
Confidence 9999 6775 36667788889999999999 88754 566677888 8888888887
No 120
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.58 E-value=3.3e-16 Score=127.44 Aligned_cols=134 Identities=16% Similarity=0.235 Sum_probs=98.9
Q ss_pred CcEEEEEcCCCCcc-ccCC---ccccCCCCCCEEEccCCcccc-----ccccccCCCCCCcEEEcccCcCC----CCCCc
Q 043006 72 QRVTALNHLDMGLG-GTIP---SHLGNLLFLMSLDLTLNNFHG-----HLAHELGQLRRLRFISFTFNKLS----GSIPT 138 (205)
Q Consensus 72 ~~l~~L~l~~~~l~-~~~p---~~l~~l~~L~~L~l~~n~~~~-----~~p~~~~~l~~L~~L~l~~n~l~----~~~p~ 138 (205)
++++.|++++|.++ +.+| ..+..+++|++|++++|.++. ..|..+..+++|++|++++|.++ +.+|.
T Consensus 159 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~ 238 (386)
T 2ca6_A 159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI 238 (386)
T ss_dssp CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH
T ss_pred CCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHH
Confidence 46777777777776 3344 356667788888888888762 23446777888888888888885 46677
Q ss_pred cccCCCCCCEEEcccccCCCC----Cchhcc--CCCCCCeeecccCcCcc----cCChhh-cCCCCCCEEEccCCCCC
Q 043006 139 WIGVLSKLRILSLCNNSLTGL----IPNSLF--NLSKLEMLDAMFNVIDG----SIPSGI-RNLSNLFNLNLGYNNLQ 205 (205)
Q Consensus 139 ~~~~l~~L~~l~l~~n~l~~~----~p~~~~--~l~~L~~L~ls~n~l~~----~~p~~~-~~l~~L~~L~ls~N~l~ 205 (205)
.+..+++|++|++++|.+++. +|..+. .+++|+.|++++|.+++ .+|..+ .++++|++|++++|.++
T Consensus 239 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~ 316 (386)
T 2ca6_A 239 ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316 (386)
T ss_dssp HGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred HHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCC
Confidence 778888888888888888754 455553 37888888888888886 377776 56788888888888764
No 121
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.56 E-value=4.3e-14 Score=117.70 Aligned_cols=120 Identities=20% Similarity=0.246 Sum_probs=73.8
Q ss_pred CcEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEc
Q 043006 72 QRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSL 151 (205)
Q Consensus 72 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l 151 (205)
.+++.|++++|.+++. | +..+++|++|++++|.+++ +| ++.+++|++|++++|.+++ +| ++.+++|++|++
T Consensus 64 ~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~-~~--~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l 134 (457)
T 3bz5_A 64 TGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTN-LD--VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNC 134 (457)
T ss_dssp TTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSC-CC--CTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEEC
T ss_pred CCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCce-ee--cCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEEC
Confidence 4566666666666542 2 5566666666666666664 23 5566666666666666663 33 566666666666
Q ss_pred ccccCCCCCchhccCCCCCCeeecccCcCcccCChhhcCCCCCCEEEccCCCCC
Q 043006 152 CNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNLQ 205 (205)
Q Consensus 152 ~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~ 205 (205)
++|++++. + +..+++|++|++++|...+.++ ++.+++|++|++++|+++
T Consensus 135 ~~N~l~~l-~--l~~l~~L~~L~l~~n~~~~~~~--~~~l~~L~~L~ls~n~l~ 183 (457)
T 3bz5_A 135 ARNTLTEI-D--VSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNKIT 183 (457)
T ss_dssp TTSCCSCC-C--CTTCTTCCEEECTTCSCCCCCC--CTTCTTCCEEECCSSCCC
T ss_pred CCCcccee-c--cccCCcCCEEECCCCCcccccc--cccCCcCCEEECCCCccc
Confidence 66666642 2 5566666666666665444553 566777777777777653
No 122
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.55 E-value=3.6e-16 Score=127.27 Aligned_cols=109 Identities=18% Similarity=0.221 Sum_probs=56.5
Q ss_pred CCCCEEEccCCccc-cccc---cccCCCCCCcEEEcccCcCCC-----CCCccccCCCCCCEEEcccccCC----CCCch
Q 043006 96 LFLMSLDLTLNNFH-GHLA---HELGQLRRLRFISFTFNKLSG-----SIPTWIGVLSKLRILSLCNNSLT----GLIPN 162 (205)
Q Consensus 96 ~~L~~L~l~~n~~~-~~~p---~~~~~l~~L~~L~l~~n~l~~-----~~p~~~~~l~~L~~l~l~~n~l~----~~~p~ 162 (205)
++|++|++++|.++ +.+| ..+..+++|++|++++|.++. ..|..+..+++|++|++++|.++ +.+|.
T Consensus 159 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~ 238 (386)
T 2ca6_A 159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI 238 (386)
T ss_dssp CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH
T ss_pred CCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHH
Confidence 44555555555544 2222 233344555555555555541 12224555566666666666654 34555
Q ss_pred hccCCCCCCeeecccCcCccc----CChhhc--CCCCCCEEEccCCCC
Q 043006 163 SLFNLSKLEMLDAMFNVIDGS----IPSGIR--NLSNLFNLNLGYNNL 204 (205)
Q Consensus 163 ~~~~l~~L~~L~ls~n~l~~~----~p~~~~--~l~~L~~L~ls~N~l 204 (205)
.+..+++|+.|++++|.+++. +|..+. ++++|+.|++++|.|
T Consensus 239 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i 286 (386)
T 2ca6_A 239 ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEI 286 (386)
T ss_dssp HGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCC
T ss_pred HHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcC
Confidence 555666666666666666533 344442 256666666666655
No 123
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.55 E-value=2.1e-14 Score=115.44 Aligned_cols=145 Identities=17% Similarity=0.110 Sum_probs=104.3
Q ss_pred CCcccceeeCCCC---------CcEEEEEcCCCCccccCCccccCCCCCCEEEccCCcccccccc-ccCCCCCCcE-EEc
Q 043006 59 ICNWIGISCGLPH---------QRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAH-ELGQLRRLRF-ISF 127 (205)
Q Consensus 59 ~c~w~gv~c~~~~---------~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~-~~~~l~~L~~-L~l 127 (205)
.|.+..|.|.... ..++.|++++|.++..-+..|.++++|++|++++|.+.+.+|. .|..++++++ +.+
T Consensus 8 ~C~~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 8 HCSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp EEETTEEEEESTTCCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred EeeCCEEEecCCCCCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 4678888886321 4689999999999854445789999999999999998766664 5788888775 556
Q ss_pred ccCcCCCCCCccccCCCCCCEEEcccccCCCCCchhccCCCCCCeeeccc-CcCcccCCh-hhcCCC-CCCEEEccCCCC
Q 043006 128 TFNKLSGSIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMF-NVIDGSIPS-GIRNLS-NLFNLNLGYNNL 204 (205)
Q Consensus 128 ~~n~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~ls~-n~l~~~~p~-~~~~l~-~L~~L~ls~N~l 204 (205)
..|+++...|..+..+++|+++++++|++++..+..+....++..+++.+ +.+. .+|. .+..+. .++.|++++|+|
T Consensus 88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~-~l~~~~f~~~~~~l~~L~L~~N~i 166 (350)
T 4ay9_X 88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIH-TIERNSFVGLSFESVILWLNKNGI 166 (350)
T ss_dssp EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCC-EECTTSSTTSBSSCEEEECCSSCC
T ss_pred cCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccc-cccccchhhcchhhhhhccccccc
Confidence 77899866678899999999999999999866555555555566666654 3444 3332 344443 455666666655
No 124
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.55 E-value=2.8e-14 Score=114.41 Aligned_cols=101 Identities=21% Similarity=0.142 Sum_probs=86.1
Q ss_pred EcCCC-CccccCCccccCCCCCCEEEccC-CccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEccccc
Q 043006 78 NHLDM-GLGGTIPSHLGNLLFLMSLDLTL-NNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSLCNNS 155 (205)
Q Consensus 78 ~l~~~-~l~~~~p~~l~~l~~L~~L~l~~-n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~n~ 155 (205)
+++++ +++ .+|. +..+++|++|+|++ |.+++..+..|..+++|++|++++|++++..|..|..+++|++|+|++|+
T Consensus 14 ~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 91 (347)
T 2ifg_A 14 RCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA 91 (347)
T ss_dssp ECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC
T ss_pred EcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCc
Confidence 34444 565 4788 99999999999996 99997777889999999999999999998888889999999999999999
Q ss_pred CCCCCchhccCCCCCCeeecccCcCc
Q 043006 156 LTGLIPNSLFNLSKLEMLDAMFNVID 181 (205)
Q Consensus 156 l~~~~p~~~~~l~~L~~L~ls~n~l~ 181 (205)
+++..+..+..++ |+.|++.+|.+.
T Consensus 92 l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 92 LESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp CSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred cceeCHHHcccCC-ceEEEeeCCCcc
Confidence 9966555555555 999999999987
No 125
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.54 E-value=8.9e-14 Score=115.77 Aligned_cols=120 Identities=22% Similarity=0.259 Sum_probs=71.3
Q ss_pred CcEEEEEcCCCCccccCCccccCCCCCCEEEccCCcccccccc--------------------ccCCCCCCcEEEcccCc
Q 043006 72 QRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAH--------------------ELGQLRRLRFISFTFNK 131 (205)
Q Consensus 72 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~--------------------~~~~l~~L~~L~l~~n~ 131 (205)
.+++.|++++|.+++ +| +..+++|++|++++|.+++ ++- .+..+++|++|++++|.
T Consensus 106 ~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~-l~l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~ 181 (457)
T 3bz5_A 106 TKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTE-IDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNK 181 (457)
T ss_dssp TTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSC-CCCTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSC
T ss_pred CcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCccce-eccccCCcCCEEECCCCCcccccccccCCcCCEEECCCCc
Confidence 567777777777765 33 6666777777777777664 220 13344455555555555
Q ss_pred CCCCCCccccCCCCCCEEEcccccCCCCCchhccCCCCCCeeecccCcCcccCChhhcCCCCCCEEEccCCCC
Q 043006 132 LSGSIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNL 204 (205)
Q Consensus 132 l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l 204 (205)
+++ +| +..+++|++|++++|.+++. .+..+++|++|++++|++++ +| ++.+++|+.|++++|++
T Consensus 182 l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l 245 (457)
T 3bz5_A 182 ITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPL 245 (457)
T ss_dssp CCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCC
T ss_pred cce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcC
Confidence 552 33 44555555666655555543 25556666666666666664 55 56666677777776665
No 126
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.54 E-value=8.7e-14 Score=115.74 Aligned_cols=119 Identities=28% Similarity=0.324 Sum_probs=77.3
Q ss_pred CcEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEc
Q 043006 72 QRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSL 151 (205)
Q Consensus 72 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l 151 (205)
.+++.|++++|.+++ +| .+..+++|++|++++|.+++ +|.. ..+|++|++++|.+++ +| .+..+++|+++++
T Consensus 131 ~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l 202 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYA 202 (454)
T ss_dssp TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEEC
T ss_pred CCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEEC
Confidence 356777777777764 55 47777777777777777763 5543 2467777777777763 55 4677777777777
Q ss_pred ccccCCCCCchhccCCCCCCeeecccCcCcccCChhhcCCCCCCEEEccCCCC
Q 043006 152 CNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNL 204 (205)
Q Consensus 152 ~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l 204 (205)
++|.+++ +|.. .++|++|++++|.++ .+|. ++.+++|++|++++|++
T Consensus 203 ~~N~l~~-l~~~---~~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~l~~N~l 249 (454)
T 1jl5_A 203 DNNSLKK-LPDL---PLSLESIVAGNNILE-ELPE-LQNLPFLTTIYADNNLL 249 (454)
T ss_dssp CSSCCSS-CCCC---CTTCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCC
T ss_pred CCCcCCc-CCCC---cCcccEEECcCCcCC-cccc-cCCCCCCCEEECCCCcC
Confidence 7777764 3332 135666666666666 5663 66667777777777665
No 127
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.53 E-value=1.1e-14 Score=125.46 Aligned_cols=96 Identities=28% Similarity=0.303 Sum_probs=47.8
Q ss_pred EEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccc-------------
Q 043006 74 VTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWI------------- 140 (205)
Q Consensus 74 l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~------------- 140 (205)
++.|++++++++ .+|..+. ++|++|++++|.++ .+|. .+++|++|++++|.++ .+|..+
T Consensus 42 l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~~l~~L~~L~Ls~N~l 113 (622)
T 3g06_A 42 NAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPVLPPGLLELSIFSNPL 113 (622)
T ss_dssp CCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCS-CCCCCCTTCCEEEECSCCC
T ss_pred CcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCC-cCCCCCCCCCEEECcCCcC
Confidence 555556555555 4454443 45555555555555 3443 3445555555555554 344300
Q ss_pred ----cCCCCCCEEEcccccCCCCCchhccCCCCCCeeecccCcCc
Q 043006 141 ----GVLSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVID 181 (205)
Q Consensus 141 ----~~l~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~ 181 (205)
..+++|+.|++++|++++ +|.. +++|++|++++|.++
T Consensus 114 ~~l~~~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~ 154 (622)
T 3g06_A 114 THLPALPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLA 154 (622)
T ss_dssp CCCCCCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS
T ss_pred CCCCCCCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCC
Confidence 023444555555555442 3321 256666666666666
No 128
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.52 E-value=3.8e-15 Score=123.97 Aligned_cols=122 Identities=19% Similarity=0.213 Sum_probs=54.2
Q ss_pred CcEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCC--------------------------------
Q 043006 72 QRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQL-------------------------------- 119 (205)
Q Consensus 72 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l-------------------------------- 119 (205)
.+++++++++|.+ |.+|++++++++|++|++++|.+.|.+|..++.+
T Consensus 11 ~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~~ 89 (454)
T 1jl5_A 11 TFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPEL 89 (454)
T ss_dssp ------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCCSC
T ss_pred ccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccCCCC
Confidence 3455555555555 4555555555555555555555555555544443
Q ss_pred -CCCcEEEcccCcCCCCCCccccCCCCCCEEEcccccCCCCCchhccCCCCCCeeecccCcCcccCChhhcCCCCCCEEE
Q 043006 120 -RRLRFISFTFNKLSGSIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLN 198 (205)
Q Consensus 120 -~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ 198 (205)
++|++|++++|.+++ +|+. +++|++|++++|.+++ +|.. .++|++|++++|.+++ +| .++++++|++|+
T Consensus 90 ~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~ 159 (454)
T 1jl5_A 90 PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEK-LP-ELQNSSFLKIID 159 (454)
T ss_dssp CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEE
T ss_pred cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEE
Confidence 455666666666653 4432 2445555555555542 2211 1466666666666663 56 366666677777
Q ss_pred ccCCCC
Q 043006 199 LGYNNL 204 (205)
Q Consensus 199 ls~N~l 204 (205)
+++|++
T Consensus 160 l~~N~l 165 (454)
T 1jl5_A 160 VDNNSL 165 (454)
T ss_dssp CCSSCC
T ss_pred CCCCcC
Confidence 766665
No 129
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.52 E-value=5.3e-17 Score=120.56 Aligned_cols=126 Identities=26% Similarity=0.300 Sum_probs=107.4
Q ss_pred cEEEEEcCCCCccccCCc------cccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCC
Q 043006 73 RVTALNHLDMGLGGTIPS------HLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKL 146 (205)
Q Consensus 73 ~l~~L~l~~~~l~~~~p~------~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L 146 (205)
.++.++++.+.+.|.+|. .+..+++|++|++++|.+++ +| .+..+++|++|++++|.++ .+|..+..+++|
T Consensus 19 ~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L 95 (198)
T 1ds9_A 19 SVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTL 95 (198)
T ss_dssp CCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHC
T ss_pred cccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcC
Confidence 445555555666665555 89999999999999999985 77 8889999999999999999 788888888999
Q ss_pred CEEEcccccCCCCCchhccCCCCCCeeecccCcCcccCC--hhhcCCCCCCEEEccCCCC
Q 043006 147 RILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIP--SGIRNLSNLFNLNLGYNNL 204 (205)
Q Consensus 147 ~~l~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p--~~~~~l~~L~~L~ls~N~l 204 (205)
++|++++|.+++ +| .+..+++|++|++++|.++ .+| ..+..+++|++|++++|++
T Consensus 96 ~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~l 152 (198)
T 1ds9_A 96 EELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKIT-NWGEIDKLAALDKLEDLLLAGNPL 152 (198)
T ss_dssp SEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECC-CHHHHHHHTTTTTCSEEEECSCHH
T ss_pred CEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCC-chhHHHHHhcCCCCCEEEecCCcc
Confidence 999999999996 56 5888999999999999998 444 3688999999999999975
No 130
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.52 E-value=2.3e-15 Score=121.64 Aligned_cols=133 Identities=20% Similarity=0.178 Sum_probs=97.2
Q ss_pred cEEEEEcCCCCccccCCccccCC-----CCCCEEEccCCcccccccccc----CCC-CCCcEEEcccCcCCCCCCccc--
Q 043006 73 RVTALNHLDMGLGGTIPSHLGNL-----LFLMSLDLTLNNFHGHLAHEL----GQL-RRLRFISFTFNKLSGSIPTWI-- 140 (205)
Q Consensus 73 ~l~~L~l~~~~l~~~~p~~l~~l-----~~L~~L~l~~n~~~~~~p~~~----~~l-~~L~~L~l~~n~l~~~~p~~~-- 140 (205)
+++.|++++|.+++..+..+..+ ++|++|++++|.+++..+..+ ..+ ++|++|++++|.+++..+..+
T Consensus 52 ~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~ 131 (362)
T 3goz_A 52 SVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQ 131 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHH
T ss_pred ceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHH
Confidence 68888999998887666666654 788999999998886555533 333 789999999998885555443
Q ss_pred --cC-CCCCCEEEcccccCCCCC----chhccCCC-CCCeeecccCcCcccCChh----hcCC-CCCCEEEccCCCCC
Q 043006 141 --GV-LSKLRILSLCNNSLTGLI----PNSLFNLS-KLEMLDAMFNVIDGSIPSG----IRNL-SNLFNLNLGYNNLQ 205 (205)
Q Consensus 141 --~~-l~~L~~l~l~~n~l~~~~----p~~~~~l~-~L~~L~ls~n~l~~~~p~~----~~~l-~~L~~L~ls~N~l~ 205 (205)
.. .++|++|++++|.+++.. +..+...+ +|++|++++|.+++..+.. +... ++|++|++++|.|+
T Consensus 132 ~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~ 209 (362)
T 3goz_A 132 AFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLG 209 (362)
T ss_dssp HHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGG
T ss_pred HHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCC
Confidence 33 358999999999888543 33445555 8999999999988665543 3445 58999999999763
No 131
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.52 E-value=1.4e-13 Score=118.48 Aligned_cols=77 Identities=30% Similarity=0.335 Sum_probs=59.7
Q ss_pred CCCcEEEcccCcCCCCCCccccCCCCCCEEEcccccCCCCCchhccCCCCCCeeecccCcCcccCChhhcCCCCCCEEEc
Q 043006 120 RRLRFISFTFNKLSGSIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNL 199 (205)
Q Consensus 120 ~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l 199 (205)
++|++|++++|.++ .+| ..+++|++|++++|.++ .+|. .+++|+.|++++|.++ .+|..+.++++|+.|++
T Consensus 221 ~~L~~L~Ls~N~L~-~lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L 291 (622)
T 3g06_A 221 SGLKELIVSGNRLT-SLP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNL 291 (622)
T ss_dssp TTCCEEECCSSCCS-CCC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEEC
T ss_pred CCCCEEEccCCccC-cCC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEe
Confidence 45666666666666 344 34567788888888777 4555 5678999999999998 88999999999999999
Q ss_pred cCCCCC
Q 043006 200 GYNNLQ 205 (205)
Q Consensus 200 s~N~l~ 205 (205)
++|+++
T Consensus 292 ~~N~l~ 297 (622)
T 3g06_A 292 EGNPLS 297 (622)
T ss_dssp CSCCCC
T ss_pred cCCCCC
Confidence 999874
No 132
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.50 E-value=1.1e-13 Score=110.99 Aligned_cols=84 Identities=23% Similarity=0.141 Sum_probs=51.8
Q ss_pred cEEEEEcCC-CCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEc
Q 043006 73 RVTALNHLD-MGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSL 151 (205)
Q Consensus 73 ~l~~L~l~~-~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l 151 (205)
+++.|++++ |.+++..+..|..+++|++|+|++|.+++..|..|..+++|++|++++|++++..+..+..++ |++|++
T Consensus 32 ~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l 110 (347)
T 2ifg_A 32 NLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVL 110 (347)
T ss_dssp CCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEEC
T ss_pred CeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEe
Confidence 366666664 666655555666666666666666666665565666666666666666666633223333333 666666
Q ss_pred ccccCC
Q 043006 152 CNNSLT 157 (205)
Q Consensus 152 ~~n~l~ 157 (205)
.+|.+.
T Consensus 111 ~~N~~~ 116 (347)
T 2ifg_A 111 SGNPLH 116 (347)
T ss_dssp CSSCCC
T ss_pred eCCCcc
Confidence 666665
No 133
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.50 E-value=5.4e-15 Score=119.43 Aligned_cols=134 Identities=21% Similarity=0.149 Sum_probs=108.4
Q ss_pred CcEEEEEcCCCCccccCC----ccccCCC-CCCEEEccCCccccccccccCCC-----CCCcEEEcccCcCCCCCCcc--
Q 043006 72 QRVTALNHLDMGLGGTIP----SHLGNLL-FLMSLDLTLNNFHGHLAHELGQL-----RRLRFISFTFNKLSGSIPTW-- 139 (205)
Q Consensus 72 ~~l~~L~l~~~~l~~~~p----~~l~~l~-~L~~L~l~~n~~~~~~p~~~~~l-----~~L~~L~l~~n~l~~~~p~~-- 139 (205)
..++.|++++|.+++..+ ..+..++ +|++|++++|.+++..+..+..+ ++|++|++++|.+++..+..
T Consensus 22 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~ 101 (362)
T 3goz_A 22 HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELV 101 (362)
T ss_dssp TTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHH
T ss_pred CCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHH
Confidence 459999999999986655 6778888 89999999999997767666664 89999999999999666654
Q ss_pred --ccCC-CCCCEEEcccccCCCCCchhcc----C-CCCCCeeecccCcCccc----CChhhcCCC-CCCEEEccCCCCC
Q 043006 140 --IGVL-SKLRILSLCNNSLTGLIPNSLF----N-LSKLEMLDAMFNVIDGS----IPSGIRNLS-NLFNLNLGYNNLQ 205 (205)
Q Consensus 140 --~~~l-~~L~~l~l~~n~l~~~~p~~~~----~-l~~L~~L~ls~n~l~~~----~p~~~~~l~-~L~~L~ls~N~l~ 205 (205)
+..+ ++|++|++++|.+++..+..+. . .++|++|++++|.+++. ++..+...+ +|++|++++|.++
T Consensus 102 ~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~ 180 (362)
T 3goz_A 102 KTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLA 180 (362)
T ss_dssp HHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGG
T ss_pred HHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCc
Confidence 4444 8999999999999977665543 3 36999999999999853 344456665 9999999999873
No 134
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.48 E-value=1.7e-15 Score=125.53 Aligned_cols=134 Identities=19% Similarity=0.097 Sum_probs=93.2
Q ss_pred CcEEEEEcCCCCcccc----CCccccCCCCCCEEEccCCccccccccccC-----CCCCCcEEEcccCcCCCC----CCc
Q 043006 72 QRVTALNHLDMGLGGT----IPSHLGNLLFLMSLDLTLNNFHGHLAHELG-----QLRRLRFISFTFNKLSGS----IPT 138 (205)
Q Consensus 72 ~~l~~L~l~~~~l~~~----~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~-----~l~~L~~L~l~~n~l~~~----~p~ 138 (205)
.+++.|++++|.+++. ++..+..+++|++|++++|.++...+..+. ..++|++|++++|.+++. ++.
T Consensus 256 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~ 335 (461)
T 1z7x_W 256 SRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSS 335 (461)
T ss_dssp CCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHH
T ss_pred CCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHH
Confidence 4566777777766643 455566667777777777776543222222 225777788887777644 345
Q ss_pred cccCCCCCCEEEcccccCCCCCchhccC-----CCCCCeeecccCcCcc----cCChhhcCCCCCCEEEccCCCCC
Q 043006 139 WIGVLSKLRILSLCNNSLTGLIPNSLFN-----LSKLEMLDAMFNVIDG----SIPSGIRNLSNLFNLNLGYNNLQ 205 (205)
Q Consensus 139 ~~~~l~~L~~l~l~~n~l~~~~p~~~~~-----l~~L~~L~ls~n~l~~----~~p~~~~~l~~L~~L~ls~N~l~ 205 (205)
.+..+++|++|++++|.+++..+..+.. .++|++|++++|.+++ .+|..+..+++|++|++++|+++
T Consensus 336 ~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~ 411 (461)
T 1z7x_W 336 VLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG 411 (461)
T ss_dssp HHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCC
T ss_pred HHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCC
Confidence 5667788888888888887654444432 6789999999998885 67878888889999999999874
No 135
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.37 E-value=5.5e-14 Score=116.45 Aligned_cols=131 Identities=21% Similarity=0.214 Sum_probs=73.2
Q ss_pred cEEEEEcCCCCccc----cCCccccCCCCCCEEEccCCcccccccccc-----CCCCCCcEEEcccCcCCCCC----Ccc
Q 043006 73 RVTALNHLDMGLGG----TIPSHLGNLLFLMSLDLTLNNFHGHLAHEL-----GQLRRLRFISFTFNKLSGSI----PTW 139 (205)
Q Consensus 73 ~l~~L~l~~~~l~~----~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~-----~~l~~L~~L~l~~n~l~~~~----p~~ 139 (205)
++++|++++|.++. .++..+..+++|++|++++|.++...+..+ ...++|++|++++|.+++.. +..
T Consensus 86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 165 (461)
T 1z7x_W 86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASV 165 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHH
Confidence 57788888887773 456677777788888888887764322221 12445777777777666422 334
Q ss_pred ccCCCCCCEEEcccccCCCCCchhcc-----CCCCCCeeecccCcCccc----CChhhcCCCCCCEEEccCCC
Q 043006 140 IGVLSKLRILSLCNNSLTGLIPNSLF-----NLSKLEMLDAMFNVIDGS----IPSGIRNLSNLFNLNLGYNN 203 (205)
Q Consensus 140 ~~~l~~L~~l~l~~n~l~~~~p~~~~-----~l~~L~~L~ls~n~l~~~----~p~~~~~l~~L~~L~ls~N~ 203 (205)
+..+++|++|++++|.+++..+..+. ..++|++|++++|.+++. ++..+..+++|++|++++|.
T Consensus 166 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 238 (461)
T 1z7x_W 166 LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK 238 (461)
T ss_dssp HHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSB
T ss_pred HhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCc
Confidence 44556666666666665533222221 234555555555555431 34444444555555555554
No 136
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.36 E-value=2.4e-12 Score=103.46 Aligned_cols=124 Identities=19% Similarity=0.096 Sum_probs=100.1
Q ss_pred EEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCC-ccccCCCCCCE-EEccc
Q 043006 76 ALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIP-TWIGVLSKLRI-LSLCN 153 (205)
Q Consensus 76 ~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p-~~~~~l~~L~~-l~l~~ 153 (205)
+++.++++++ .+|..+. +.+++|++++|+++...+..|..+++|++|++++|.+.+.+| ..|.+++++++ +.+.+
T Consensus 13 ~v~C~~~~Lt-~iP~~l~--~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~ 89 (350)
T 4ay9_X 13 VFLCQESKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89 (350)
T ss_dssp EEEEESTTCC-SCCTTCC--TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred EEEecCCCCC-ccCcCcC--CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence 5678888888 7787663 589999999999994444568999999999999999876666 45788988775 66677
Q ss_pred ccCCCCCchhccCCCCCCeeecccCcCcccCChhhcCCCCCCEEEccCC
Q 043006 154 NSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYN 202 (205)
Q Consensus 154 n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~N 202 (205)
|++++..|..|..+++|++|++++|.+.+..+..+....++..+++.++
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~ 138 (350)
T 4ay9_X 90 NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDN 138 (350)
T ss_dssp TTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESC
T ss_pred CcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccc
Confidence 8999777888999999999999999998544445556667788888653
No 137
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.32 E-value=1.7e-13 Score=111.26 Aligned_cols=134 Identities=19% Similarity=0.199 Sum_probs=101.4
Q ss_pred CcEEEEEcCCCCccccCCcc-ccCCCCCCEEEccCCcccccccccc-----CCCCCCcEEEcccCcCCCC----CCcccc
Q 043006 72 QRVTALNHLDMGLGGTIPSH-LGNLLFLMSLDLTLNNFHGHLAHEL-----GQLRRLRFISFTFNKLSGS----IPTWIG 141 (205)
Q Consensus 72 ~~l~~L~l~~~~l~~~~p~~-l~~l~~L~~L~l~~n~~~~~~p~~~-----~~l~~L~~L~l~~n~l~~~----~p~~~~ 141 (205)
..++.|++++|.++..-... ...+++|++|++++|.++......+ ...++|++|++++|.++.. ++..+.
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~ 180 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA 180 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence 57999999999987542222 2335688999999999875433333 3467899999999998742 345557
Q ss_pred CCCCCCEEEcccccCCCC----CchhccCCCCCCeeecccCcCccc----CChhhcCCCCCCEEEccCCCCC
Q 043006 142 VLSKLRILSLCNNSLTGL----IPNSLFNLSKLEMLDAMFNVIDGS----IPSGIRNLSNLFNLNLGYNNLQ 205 (205)
Q Consensus 142 ~l~~L~~l~l~~n~l~~~----~p~~~~~l~~L~~L~ls~n~l~~~----~p~~~~~l~~L~~L~ls~N~l~ 205 (205)
..++|++|++++|.+++. ++..+...++|+.|++++|.+++. ++..+...++|++|++++|.|+
T Consensus 181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence 889999999999998853 355667778999999999999743 4455667789999999999874
No 138
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.21 E-value=5.9e-13 Score=108.04 Aligned_cols=134 Identities=18% Similarity=0.197 Sum_probs=101.4
Q ss_pred CcEEEEEcCCCCccccCCcc----ccC-CCCCCEEEccCCcccccccccc-CCCCCCcEEEcccCcCCCCCCccc-----
Q 043006 72 QRVTALNHLDMGLGGTIPSH----LGN-LLFLMSLDLTLNNFHGHLAHEL-GQLRRLRFISFTFNKLSGSIPTWI----- 140 (205)
Q Consensus 72 ~~l~~L~l~~~~l~~~~p~~----l~~-l~~L~~L~l~~n~~~~~~p~~~-~~l~~L~~L~l~~n~l~~~~p~~~----- 140 (205)
..++.|++++|.++...... +.. .+.|++|++++|.++......+ ..+++|++|++++|.++......+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 56899999999987543322 222 2689999999999875333222 345789999999999974433333
Q ss_pred cCCCCCCEEEcccccCCC----CCchhccCCCCCCeeecccCcCccc----CChhhcCCCCCCEEEccCCCCC
Q 043006 141 GVLSKLRILSLCNNSLTG----LIPNSLFNLSKLEMLDAMFNVIDGS----IPSGIRNLSNLFNLNLGYNNLQ 205 (205)
Q Consensus 141 ~~l~~L~~l~l~~n~l~~----~~p~~~~~l~~L~~L~ls~n~l~~~----~p~~~~~l~~L~~L~ls~N~l~ 205 (205)
...++|++|++++|.++. .++..+...++|++|++++|.+.+. ++..+...++|+.|++++|.|+
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~ 224 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAG 224 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCC
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCC
Confidence 346899999999999974 2445567889999999999999743 3556777889999999999874
No 139
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.13 E-value=2.5e-12 Score=109.64 Aligned_cols=133 Identities=14% Similarity=0.104 Sum_probs=79.6
Q ss_pred cEEEEEcCCCCccccCCccccC-CCCCCEEEcc----CCccccc-----cccccCCCCCCcEEEcccCc--CCCCCCccc
Q 043006 73 RVTALNHLDMGLGGTIPSHLGN-LLFLMSLDLT----LNNFHGH-----LAHELGQLRRLRFISFTFNK--LSGSIPTWI 140 (205)
Q Consensus 73 ~l~~L~l~~~~l~~~~p~~l~~-l~~L~~L~l~----~n~~~~~-----~p~~~~~l~~L~~L~l~~n~--l~~~~p~~~ 140 (205)
+++.|++..+.+++..+..+.. +++|++|+++ .|.+++. ++..+..+++|++|+++.|. +++..+..+
T Consensus 379 ~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~ 458 (592)
T 3ogk_B 379 ELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYI 458 (592)
T ss_dssp TCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHH
T ss_pred cCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHH
Confidence 4455555444554443333333 5556666664 4444431 22223446666666665322 443333333
Q ss_pred c-CCCCCCEEEcccccCCC-CCchhccCCCCCCeeecccCcCccc-CChhhcCCCCCCEEEccCCCCC
Q 043006 141 G-VLSKLRILSLCNNSLTG-LIPNSLFNLSKLEMLDAMFNVIDGS-IPSGIRNLSNLFNLNLGYNNLQ 205 (205)
Q Consensus 141 ~-~l~~L~~l~l~~n~l~~-~~p~~~~~l~~L~~L~ls~n~l~~~-~p~~~~~l~~L~~L~ls~N~l~ 205 (205)
. .+++|++|++++|++++ .++..+..+++|++|++++|.+++. ++.....+++|++|++++|+++
T Consensus 459 ~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it 526 (592)
T 3ogk_B 459 GQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRAS 526 (592)
T ss_dssp HHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCC
T ss_pred HHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCC
Confidence 3 36788888888888875 3455567788888888888887654 3444467888888888888764
No 140
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=99.12 E-value=4.4e-12 Score=98.09 Aligned_cols=80 Identities=21% Similarity=0.244 Sum_probs=64.8
Q ss_pred CCCCCCcEEEcccCcCCC--CCCccccCCCCCCEEEcccccCCCCCchhccCCC--CCCeeecccCcCcccCCh------
Q 043006 117 GQLRRLRFISFTFNKLSG--SIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLS--KLEMLDAMFNVIDGSIPS------ 186 (205)
Q Consensus 117 ~~l~~L~~L~l~~n~l~~--~~p~~~~~l~~L~~l~l~~n~l~~~~p~~~~~l~--~L~~L~ls~n~l~~~~p~------ 186 (205)
..+++|++|++++|.+++ .+|..+..+++|+.|+|++|.+++. ..+..+. +|++|++++|.+.+.+|.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 357899999999999996 4456677899999999999999964 2344344 899999999999987773
Q ss_pred -hhcCCCCCCEEE
Q 043006 187 -GIRNLSNLFNLN 198 (205)
Q Consensus 187 -~~~~l~~L~~L~ 198 (205)
.+..+++|+.||
T Consensus 245 ~il~~~P~L~~LD 257 (267)
T 3rw6_A 245 AIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHCTTCCEES
T ss_pred HHHHHCcccCeEC
Confidence 367889999887
No 141
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.03 E-value=7.1e-11 Score=100.66 Aligned_cols=64 Identities=11% Similarity=0.111 Sum_probs=27.9
Q ss_pred CCCCCCEEEccCCccccc----cccccCCCCCCcEEEcccCcCCC----CCCccccCCCCCCEEEcccccCC
Q 043006 94 NLLFLMSLDLTLNNFHGH----LAHELGQLRRLRFISFTFNKLSG----SIPTWIGVLSKLRILSLCNNSLT 157 (205)
Q Consensus 94 ~l~~L~~L~l~~n~~~~~----~p~~~~~l~~L~~L~l~~n~l~~----~~p~~~~~l~~L~~l~l~~n~l~ 157 (205)
.+++|++|++++|.+++. ++.....+++|++|++++|.+++ .++..+..+++|++|++++|.+.
T Consensus 162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~ 233 (592)
T 3ogk_B 162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEIL 233 (592)
T ss_dssp HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGG
T ss_pred hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHH
Confidence 445555555555554432 12222334455555555554441 12222334445555555544443
No 142
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.98 E-value=2.1e-09 Score=85.40 Aligned_cols=84 Identities=12% Similarity=0.013 Sum_probs=56.7
Q ss_pred CCCCcEEEcccCcCCCCCCccccCCCCCCEEEcccccCCCCCchhccCCCCCC-eeecccCcCcccCChhhcCCCCCCEE
Q 043006 119 LRRLRFISFTFNKLSGSIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLE-MLDAMFNVIDGSIPSGIRNLSNLFNL 197 (205)
Q Consensus 119 l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~~~~l~~L~-~L~ls~n~l~~~~p~~~~~l~~L~~L 197 (205)
+++|+.+++++|.++...+..|.++++|+.+++.+| ++..-+..|.++++|+ .+++.+ .++..-+..|.++++|+.+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l 302 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV 302 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence 567777777777777333355777777888877776 5544445677777777 777777 5552334567777777777
Q ss_pred EccCCCC
Q 043006 198 NLGYNNL 204 (205)
Q Consensus 198 ~ls~N~l 204 (205)
++++|.+
T Consensus 303 ~l~~n~i 309 (329)
T 3sb4_A 303 LATGDKI 309 (329)
T ss_dssp EECSSCC
T ss_pred EeCCCcc
Confidence 7777665
No 143
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.93 E-value=1e-10 Score=85.74 Aligned_cols=113 Identities=15% Similarity=0.134 Sum_probs=55.0
Q ss_pred ccCCCCCCEEEccCC-ccccc----cccccCCCCCCcEEEcccCcCCCC----CCccccCCCCCCEEEcccccCCCC---
Q 043006 92 LGNLLFLMSLDLTLN-NFHGH----LAHELGQLRRLRFISFTFNKLSGS----IPTWIGVLSKLRILSLCNNSLTGL--- 159 (205)
Q Consensus 92 l~~l~~L~~L~l~~n-~~~~~----~p~~~~~l~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~l~l~~n~l~~~--- 159 (205)
+...+.|++|++++| .+... +...+...++|++|++++|.+... +.+.+...++|++|++++|.+++.
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~ 111 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL 111 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence 344445555555555 44321 222333445555555555555421 122333345566666666655532
Q ss_pred -CchhccCCCCCCeeec--ccCcCccc----CChhhcCCCCCCEEEccCCCC
Q 043006 160 -IPNSLFNLSKLEMLDA--MFNVIDGS----IPSGIRNLSNLFNLNLGYNNL 204 (205)
Q Consensus 160 -~p~~~~~l~~L~~L~l--s~n~l~~~----~p~~~~~l~~L~~L~ls~N~l 204 (205)
+.+.+...++|++|++ ++|.+... +...+...++|++|++++|.+
T Consensus 112 ~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 112 ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 2333444555666666 55665522 223344455666666666653
No 144
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.84 E-value=8.7e-11 Score=100.10 Aligned_cols=131 Identities=12% Similarity=0.092 Sum_probs=75.6
Q ss_pred cEEEEEcCCCCccccCCcccc-CCCCCCEEEcc--C----Ccccc-----ccccccCCCCCCcEEEcccCcCCCCCCccc
Q 043006 73 RVTALNHLDMGLGGTIPSHLG-NLLFLMSLDLT--L----NNFHG-----HLAHELGQLRRLRFISFTFNKLSGSIPTWI 140 (205)
Q Consensus 73 ~l~~L~l~~~~l~~~~p~~l~-~l~~L~~L~l~--~----n~~~~-----~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~ 140 (205)
+++.|.+..+.+++.....+. .+++|++|+++ + +.++. .++..+..+++|++|++++ .+++..+..+
T Consensus 373 ~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l 451 (594)
T 2p1m_B 373 KLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYI 451 (594)
T ss_dssp TCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHH
T ss_pred hHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHH
Confidence 344444444444433333332 35566666666 3 33331 1111134456677777755 4443333444
Q ss_pred cC-CCCCCEEEcccccCCCCCchhc-cCCCCCCeeecccCcCcccCCh-hhcCCCCCCEEEccCCCC
Q 043006 141 GV-LSKLRILSLCNNSLTGLIPNSL-FNLSKLEMLDAMFNVIDGSIPS-GIRNLSNLFNLNLGYNNL 204 (205)
Q Consensus 141 ~~-l~~L~~l~l~~n~l~~~~p~~~-~~l~~L~~L~ls~n~l~~~~p~-~~~~l~~L~~L~ls~N~l 204 (205)
.. +++|++|++++|.+++..+..+ ..+++|+.|++++|.+++..+. ....+++|+.|++++|++
T Consensus 452 ~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 452 GTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp HHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred HHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 43 6778888888888765444333 5678888888888888644333 234577888888888865
No 145
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.77 E-value=2.5e-09 Score=86.37 Aligned_cols=131 Identities=15% Similarity=0.205 Sum_probs=86.5
Q ss_pred CcEEEEEcCCCCccccCCccccCCCCCCEEEccCCcccccccccc--CCCCCCcEEEccc--CcCCCC-----CCccc--
Q 043006 72 QRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHEL--GQLRRLRFISFTF--NKLSGS-----IPTWI-- 140 (205)
Q Consensus 72 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~--~~l~~L~~L~l~~--n~l~~~-----~p~~~-- 140 (205)
+.++.|++.++.- -.+++ + .+++|++|++..+.+.......+ ..+++|++|+++. |...+. +...+
T Consensus 172 P~L~~L~L~g~~~-l~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~ 248 (362)
T 2ra8_A 172 PLLNNLKIKGTNN-LSIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSK 248 (362)
T ss_dssp TTCCEEEEECCBT-CBCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCT
T ss_pred CCCcEEEEeCCCC-ceecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhc
Confidence 5788888877631 12333 3 36788888888887764332233 2678899998753 221111 11122
Q ss_pred cCCCCCCEEEcccccCCCCCchhcc---CCCCCCeeecccCcCccc----CChhhcCCCCCCEEEccCCCCC
Q 043006 141 GVLSKLRILSLCNNSLTGLIPNSLF---NLSKLEMLDAMFNVIDGS----IPSGIRNLSNLFNLNLGYNNLQ 205 (205)
Q Consensus 141 ~~l~~L~~l~l~~n~l~~~~p~~~~---~l~~L~~L~ls~n~l~~~----~p~~~~~l~~L~~L~ls~N~l~ 205 (205)
..+++|++|++.+|.+++..+..+. .+++|++|+++.|.+.+. ++..+.++++|+.|++++|.|+
T Consensus 249 ~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 249 DRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp TTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred CCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 2478999999999888754433333 578899999999998753 3444456789999999999874
No 146
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.77 E-value=2.4e-08 Score=79.27 Aligned_cols=103 Identities=18% Similarity=0.047 Sum_probs=87.1
Q ss_pred CCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCC-EEEcccccCCCCCchhccCCCCCCee
Q 043006 95 LLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLR-ILSLCNNSLTGLIPNSLFNLSKLEML 173 (205)
Q Consensus 95 l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~-~l~l~~n~l~~~~p~~~~~l~~L~~L 173 (205)
+++|+.+++++|+++...+..|..+.+|+.++++.| ++...+..|.++++|+ .+++.+ .++..-+..|.++++|+.+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l 302 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV 302 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence 679999999999998555567999999999999998 7744457799999999 999998 7775556889999999999
Q ss_pred ecccCcCcccCChhhcCCCCCCEEEc
Q 043006 174 DAMFNVIDGSIPSGIRNLSNLFNLNL 199 (205)
Q Consensus 174 ~ls~n~l~~~~p~~~~~l~~L~~L~l 199 (205)
+++.|.++..-+..|.++++|+.++.
T Consensus 303 ~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 303 LATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp EECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred EeCCCccCccchhhhcCCcchhhhcc
Confidence 99999998444457899999998863
No 147
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.75 E-value=1.3e-09 Score=92.79 Aligned_cols=131 Identities=13% Similarity=0.109 Sum_probs=86.0
Q ss_pred CcEEEEEcCCCCccccCCcccc-CCCCCCEEEccCC-ccccc-cccccCCCCCCcEEEcccCcCCCCCCcccc----CCC
Q 043006 72 QRVTALNHLDMGLGGTIPSHLG-NLLFLMSLDLTLN-NFHGH-LAHELGQLRRLRFISFTFNKLSGSIPTWIG----VLS 144 (205)
Q Consensus 72 ~~l~~L~l~~~~l~~~~p~~l~-~l~~L~~L~l~~n-~~~~~-~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~----~l~ 144 (205)
++++.|+++++.+++..+..+. .+++|++|++++| .++.. ++.....+++|++|++++|.+++..+..+. .++
T Consensus 105 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~ 184 (594)
T 2p1m_B 105 TWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYT 184 (594)
T ss_dssp TTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCC
T ss_pred CCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCC
Confidence 5688888888887766555554 5778888888888 44422 343344678888888888887655444333 566
Q ss_pred CCCEEEccccc--CCC-CCchhccCCCCCCeeecccCcCcccCChhhcCCCCCCEEEccCC
Q 043006 145 KLRILSLCNNS--LTG-LIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYN 202 (205)
Q Consensus 145 ~L~~l~l~~n~--l~~-~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~N 202 (205)
+|++|++++|. ++. .++.....+++|+.|++++|...+.+|..+.++++|+.|+++.+
T Consensus 185 ~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~ 245 (594)
T 2p1m_B 185 SLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGY 245 (594)
T ss_dssp CCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBC
T ss_pred cCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccc
Confidence 88888888876 221 11222345688888888887322246666777777777775543
No 148
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.68 E-value=1.7e-08 Score=78.03 Aligned_cols=80 Identities=25% Similarity=0.271 Sum_probs=64.6
Q ss_pred cCCCCCCEEEccCCcccc--ccccccCCCCCCcEEEcccCcCCCCCCccccCCC--CCCEEEcccccCCCCCch------
Q 043006 93 GNLLFLMSLDLTLNNFHG--HLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLS--KLRILSLCNNSLTGLIPN------ 162 (205)
Q Consensus 93 ~~l~~L~~L~l~~n~~~~--~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~--~L~~l~l~~n~l~~~~p~------ 162 (205)
..+++|+.|+|++|.+++ .+|..+..+++|+.|++++|.+++. +.+..+. +|++|++++|++.+.+|.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 347899999999999997 4556667899999999999999854 2333344 999999999999986662
Q ss_pred -hccCCCCCCeee
Q 043006 163 -SLFNLSKLEMLD 174 (205)
Q Consensus 163 -~~~~l~~L~~L~ 174 (205)
.+..+|+|+.||
T Consensus 245 ~il~~~P~L~~LD 257 (267)
T 3rw6_A 245 AIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHCTTCCEES
T ss_pred HHHHHCcccCeEC
Confidence 366889999987
No 149
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.64 E-value=4.8e-09 Score=76.75 Aligned_cols=110 Identities=16% Similarity=0.125 Sum_probs=86.4
Q ss_pred CcEEEEEcCCC-Ccccc----CCccccCCCCCCEEEccCCccccc----cccccCCCCCCcEEEcccCcCCCC----CCc
Q 043006 72 QRVTALNHLDM-GLGGT----IPSHLGNLLFLMSLDLTLNNFHGH----LAHELGQLRRLRFISFTFNKLSGS----IPT 138 (205)
Q Consensus 72 ~~l~~L~l~~~-~l~~~----~p~~l~~l~~L~~L~l~~n~~~~~----~p~~~~~l~~L~~L~l~~n~l~~~----~p~ 138 (205)
..+++|++++| .+... +...+...+.|++|++++|.+... +...+...++|++|++++|.+... +..
T Consensus 36 ~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~ 115 (185)
T 1io0_A 36 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVE 115 (185)
T ss_dssp TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHH
T ss_pred CCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHH
Confidence 67999999999 88642 445566778999999999998742 333445568899999999999843 346
Q ss_pred cccCCCCCCEEEc--ccccCCCC----CchhccCCCCCCeeecccCcCc
Q 043006 139 WIGVLSKLRILSL--CNNSLTGL----IPNSLFNLSKLEMLDAMFNVID 181 (205)
Q Consensus 139 ~~~~l~~L~~l~l--~~n~l~~~----~p~~~~~l~~L~~L~ls~n~l~ 181 (205)
.+...++|++|++ ++|.++.. +.+.+...++|++|++++|.+.
T Consensus 116 ~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 116 ALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp GGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 6777889999999 88999853 3344556689999999999885
No 150
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.50 E-value=7.7e-08 Score=77.59 Aligned_cols=131 Identities=15% Similarity=0.067 Sum_probs=88.2
Q ss_pred CcEEEEEcCCCCcc---------ccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCcccc-
Q 043006 72 QRVTALNHLDMGLG---------GTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIG- 141 (205)
Q Consensus 72 ~~l~~L~l~~~~l~---------~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~- 141 (205)
++++.|.+.+.... +.++..+..++.|+.|++++|.-. .++. + .+++|+.|++..+.+.......+.
T Consensus 139 ~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~ 215 (362)
T 2ra8_A 139 AHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILG 215 (362)
T ss_dssp TTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHH
T ss_pred chhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHH
Confidence 46778877655321 234455677889999999887411 3443 3 378999999998887643333343
Q ss_pred -CCCCCCEEEccc--ccCCCC-----Cchhc--cCCCCCCeeecccCcCcccCChhhc---CCCCCCEEEccCCCCC
Q 043006 142 -VLSKLRILSLCN--NSLTGL-----IPNSL--FNLSKLEMLDAMFNVIDGSIPSGIR---NLSNLFNLNLGYNNLQ 205 (205)
Q Consensus 142 -~l~~L~~l~l~~--n~l~~~-----~p~~~--~~l~~L~~L~ls~n~l~~~~p~~~~---~l~~L~~L~ls~N~l~ 205 (205)
.+++|++|+|+. |...+. +...+ ..+++|+.|++.+|.+.+..+..+. .+++|++|+++.|.++
T Consensus 216 ~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~ 292 (362)
T 2ra8_A 216 SDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLT 292 (362)
T ss_dssp SBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCB
T ss_pred ccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCC
Confidence 789999999863 222211 11222 2579999999999998755444443 5789999999999873
No 151
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.34 E-value=2.1e-07 Score=67.21 Aligned_cols=92 Identities=11% Similarity=0.019 Sum_probs=67.5
Q ss_pred CCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCc-CCCCCCccccCC----CCCCEEEcccc-cCCCCCc
Q 043006 88 IPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNK-LSGSIPTWIGVL----SKLRILSLCNN-SLTGLIP 161 (205)
Q Consensus 88 ~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~-l~~~~p~~~~~l----~~L~~l~l~~n-~l~~~~p 161 (205)
+|.....-..|++||++++.++..--..+..+++|++|++++|. ++...-..++.+ ++|++|++++| ++++.--
T Consensus 53 LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl 132 (176)
T 3e4g_A 53 LPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGI 132 (176)
T ss_dssp SCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHH
T ss_pred CCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHH
Confidence 44433223479999999999886544567889999999999985 664333445554 47999999998 4875444
Q ss_pred hhccCCCCCCeeecccCc
Q 043006 162 NSLFNLSKLEMLDAMFNV 179 (205)
Q Consensus 162 ~~~~~l~~L~~L~ls~n~ 179 (205)
..+..+++|+.|++++|.
T Consensus 133 ~~L~~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 133 IALHHFRNLKYLFLSDLP 150 (176)
T ss_dssp HHGGGCTTCCEEEEESCT
T ss_pred HHHhcCCCCCEEECCCCC
Confidence 556788999999999985
No 152
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.28 E-value=4.1e-06 Score=68.42 Aligned_cols=87 Identities=14% Similarity=-0.009 Sum_probs=45.4
Q ss_pred cccCCCCCCcEEEcccCcCC-----CCCCccccCCCCCCEEEcccccCCCCCchhccCCCCCCeeecccCcCcccCChhh
Q 043006 114 HELGQLRRLRFISFTFNKLS-----GSIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGI 188 (205)
Q Consensus 114 ~~~~~l~~L~~L~l~~n~l~-----~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~ 188 (205)
..|..+++|+.+.+.+|.+. ...+..|..+++|+.+++.+ .++..-...|.++.+|+.+.+..| ++..-+..|
T Consensus 265 ~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF 342 (401)
T 4fdw_A 265 RAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAF 342 (401)
T ss_dssp TTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSS
T ss_pred hHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhC
Confidence 34555666666666555443 12234455666666666652 344333344555666666666443 431223345
Q ss_pred cCCCCCCEEEccCCC
Q 043006 189 RNLSNLFNLNLGYNN 203 (205)
Q Consensus 189 ~~l~~L~~L~ls~N~ 203 (205)
.++ +|+.+++++|.
T Consensus 343 ~~~-~L~~l~l~~n~ 356 (401)
T 4fdw_A 343 NNT-GIKEVKVEGTT 356 (401)
T ss_dssp SSS-CCCEEEECCSS
T ss_pred CCC-CCCEEEEcCCC
Confidence 556 66666666654
No 153
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.27 E-value=6.8e-06 Score=67.10 Aligned_cols=125 Identities=11% Similarity=0.067 Sum_probs=63.6
Q ss_pred EEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEccc
Q 043006 74 VTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSLCN 153 (205)
Q Consensus 74 l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~ 153 (205)
++.+.+.. .+...-+..|.++++|+.++++.|.++ .++.......+|+.+.+..+ ++......|.++++|+.+++..
T Consensus 159 L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~-~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~ 235 (401)
T 4fdw_A 159 VQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKIT-KLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPE 235 (401)
T ss_dssp CCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCS-EECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCT
T ss_pred ceEEEeCC-CccEehHHHhhCcccCCeeecCCCcce-EechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCC
Confidence 45555543 344333345666666777777666665 23322222355555555432 3322223444555555555543
Q ss_pred c---------------------cCCCCCchhccCCCCCCeeecccCcCc-----ccCChhhcCCCCCCEEEccC
Q 043006 154 N---------------------SLTGLIPNSLFNLSKLEMLDAMFNVID-----GSIPSGIRNLSNLFNLNLGY 201 (205)
Q Consensus 154 n---------------------~l~~~~p~~~~~l~~L~~L~ls~n~l~-----~~~p~~~~~l~~L~~L~ls~ 201 (205)
| .++..-+..|..+++|+.+++.+|.+. ..-+..|.++++|+.+++..
T Consensus 236 ~l~~I~~~aF~~~~L~~i~lp~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~ 309 (401)
T 4fdw_A 236 NVSTIGQEAFRESGITTVKLPNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE 309 (401)
T ss_dssp TCCEECTTTTTTCCCSEEEEETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT
T ss_pred CccCccccccccCCccEEEeCCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC
Confidence 2 233222345566677777777666553 12233466777777777663
No 154
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.25 E-value=4e-07 Score=65.77 Aligned_cols=86 Identities=13% Similarity=0.134 Sum_probs=65.1
Q ss_pred CcEEEEEcCCCCccccCCccccCCCCCCEEEccCCc-cccccccccCCC----CCCcEEEcccCc-CCCCCCccccCCCC
Q 043006 72 QRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNN-FHGHLAHELGQL----RRLRFISFTFNK-LSGSIPTWIGVLSK 145 (205)
Q Consensus 72 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~-~~~~~p~~~~~l----~~L~~L~l~~n~-l~~~~p~~~~~l~~ 145 (205)
.++++|+++++.++..--..+..+++|++|+++++. ++..--..+..+ ++|++|++++|. ++..--..+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 579999999999876544557889999999999985 654322334443 479999999975 77544456778999
Q ss_pred CCEEEccccc-CC
Q 043006 146 LRILSLCNNS-LT 157 (205)
Q Consensus 146 L~~l~l~~n~-l~ 157 (205)
|++|+++++. ++
T Consensus 141 L~~L~L~~c~~It 153 (176)
T 3e4g_A 141 LKYLFLSDLPGVK 153 (176)
T ss_dssp CCEEEEESCTTCC
T ss_pred CCEEECCCCCCCC
Confidence 9999999984 55
No 155
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.63 E-value=1.2e-05 Score=58.97 Aligned_cols=14 Identities=43% Similarity=0.581 Sum_probs=7.1
Q ss_pred CCCCEEEcccccCC
Q 043006 144 SKLRILSLCNNSLT 157 (205)
Q Consensus 144 ~~L~~l~l~~n~l~ 157 (205)
+.|++|+|++|.++
T Consensus 98 ~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 98 PSLRVLNVESNFLT 111 (197)
T ss_dssp SSCCEEECCSSBCC
T ss_pred CccCeEecCCCcCC
Confidence 44555555555554
No 156
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.56 E-value=0.00051 Score=55.56 Aligned_cols=83 Identities=13% Similarity=0.093 Sum_probs=33.4
Q ss_pred ccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEcccccCCCCCchhccCCCCCCeeecccCcCcccCChhhcCCCCC
Q 043006 115 ELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNL 194 (205)
Q Consensus 115 ~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L 194 (205)
.|..+.+|+.+.+..+ ++......|.++.+|+.+.+..+ ++..-...|.++.+|+.+++.++... + ..+....+|
T Consensus 306 aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~--~-~~~~~~~~L 380 (394)
T 4gt6_A 306 VFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQ--W-NAISTDSGL 380 (394)
T ss_dssp TTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHH--H-HTCBCCCCC
T ss_pred eecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceee--h-hhhhccCCC
Confidence 3444555555555432 33122234555555555555432 33222344555555555555554332 1 233444455
Q ss_pred CEEEccCC
Q 043006 195 FNLNLGYN 202 (205)
Q Consensus 195 ~~L~ls~N 202 (205)
+.+.+..|
T Consensus 381 ~~i~i~~~ 388 (394)
T 4gt6_A 381 QNLPVAPG 388 (394)
T ss_dssp --------
T ss_pred CEEEeCCC
Confidence 55554444
No 157
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.42 E-value=0.00032 Score=47.92 Aligned_cols=57 Identities=26% Similarity=0.216 Sum_probs=39.1
Q ss_pred cEEEcccCcCC-CCCCccccCCCCCCEEEcccccCCCCCchhccCCCCCCeeecccCcCc
Q 043006 123 RFISFTFNKLS-GSIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVID 181 (205)
Q Consensus 123 ~~L~l~~n~l~-~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~ 181 (205)
..++.+++.++ ..+|..+. +++++|+|++|+++..-+..|..+++|+.|++++|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 36677777765 35554322 36888888888888554556677888888888888764
No 158
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.40 E-value=0.0014 Score=53.00 Aligned_cols=109 Identities=13% Similarity=0.171 Sum_probs=81.2
Q ss_pred ccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEcccccCCCCCchhccCCCC
Q 043006 90 SHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSK 169 (205)
Q Consensus 90 ~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~~~~l~~ 169 (205)
..|.....|+.+.+..+..+ .-...|..+..|+.+.+.. .++......|.++.+|+.+++..+ ++..-...|.++.+
T Consensus 259 ~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~ 335 (394)
T 4gt6_A 259 HAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQ 335 (394)
T ss_dssp TTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTT
T ss_pred ceeeecccccEEecccccce-ecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCC
Confidence 35667778888888765543 3345678889999999964 455233467889999999999765 55344567889999
Q ss_pred CCeeecccCcCcccCCh-hhcCCCCCCEEEccCCC
Q 043006 170 LEMLDAMFNVIDGSIPS-GIRNLSNLFNLNLGYNN 203 (205)
Q Consensus 170 L~~L~ls~n~l~~~~p~-~~~~l~~L~~L~ls~N~ 203 (205)
|+.+.+..+ ++ .++. .|.++++|+.+++.+|.
T Consensus 336 L~~i~ip~s-v~-~I~~~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 336 LERIAIPSS-VT-KIPESAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp CCEEEECTT-CC-BCCGGGGTTCTTCCEEEESSCH
T ss_pred CCEEEECcc-cC-EEhHhHhhCCCCCCEEEECCce
Confidence 999999765 55 5554 68899999999998763
No 159
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.28 E-value=0.0022 Score=51.78 Aligned_cols=84 Identities=11% Similarity=0.006 Sum_probs=54.9
Q ss_pred ccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEcccccCCCCCchhccCCCCCCeeecccCcCcccCC-hhhcCCCC
Q 043006 115 ELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIP-SGIRNLSN 193 (205)
Q Consensus 115 ~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p-~~~~~l~~ 193 (205)
.|..+.+|+.+.+..+ ++......|.++.+|+.+++..+ ++..-...|.++.+|+.+++..+ ++ .++ ..|.++.+
T Consensus 292 ~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~C~~ 367 (394)
T 4fs7_A 292 TFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LR-KIGANAFQGCIN 367 (394)
T ss_dssp TTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTBTTCTT
T ss_pred cccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-cc-EehHHHhhCCCC
Confidence 3556677777777654 44233456777888888888643 55333456777888888888766 55 343 45778888
Q ss_pred CCEEEccCC
Q 043006 194 LFNLNLGYN 202 (205)
Q Consensus 194 L~~L~ls~N 202 (205)
|+.+++..+
T Consensus 368 L~~i~lp~~ 376 (394)
T 4fs7_A 368 LKKVELPKR 376 (394)
T ss_dssp CCEEEEEGG
T ss_pred CCEEEECCC
Confidence 888877554
No 160
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.26 E-value=0.00073 Score=46.13 Aligned_cols=56 Identities=23% Similarity=0.189 Sum_probs=33.9
Q ss_pred EEEcCCCCcc-ccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCC
Q 043006 76 ALNHLDMGLG-GTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLS 133 (205)
Q Consensus 76 ~L~l~~~~l~-~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~ 133 (205)
.++.++++++ ..+|..+. ..+++|+|++|.++..-+..|..+++|++|++.+|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 5566666665 34554332 25777777777777433444566667777777766553
No 161
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.25 E-value=0.002 Score=51.62 Aligned_cols=105 Identities=14% Similarity=0.126 Sum_probs=52.0
Q ss_pred ccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEcccccCCCCCchhccCCCCCC
Q 043006 92 LGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLE 171 (205)
Q Consensus 92 l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~~~~l~~L~ 171 (205)
+.....|+.+.+..+ ++..-...|..+.+|+.+.+..+ +.......|..+++|+.+.+.++.++..-...|.++.+|+
T Consensus 236 f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~ 313 (379)
T 4h09_A 236 FYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLS 313 (379)
T ss_dssp TTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCC
T ss_pred ccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCC
Confidence 344445555555443 22122233445555555555432 3312223455666666666665555533334555666666
Q ss_pred eeecccCcCcccCC-hhhcCCCCCCEEEcc
Q 043006 172 MLDAMFNVIDGSIP-SGIRNLSNLFNLNLG 200 (205)
Q Consensus 172 ~L~ls~n~l~~~~p-~~~~~l~~L~~L~ls 200 (205)
.+.+..+ ++ .++ .+|.++++|+.+.+.
T Consensus 314 ~i~lp~~-l~-~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 314 SVTLPTA-LK-TIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp EEECCTT-CC-EECTTTTTTCTTCCCCCCC
T ss_pred EEEcCcc-cc-EEHHHHhhCCCCCCEEEEC
Confidence 6666543 33 333 245556666555553
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.07 E-value=0.00028 Score=51.75 Aligned_cols=85 Identities=11% Similarity=0.090 Sum_probs=57.0
Q ss_pred CCCCCcEEEcccC-cCCC----CCCccccCCCCCCEEEcccccCCC----CCchhccCCCCCCeeecccCcCccc----C
Q 043006 118 QLRRLRFISFTFN-KLSG----SIPTWIGVLSKLRILSLCNNSLTG----LIPNSLFNLSKLEMLDAMFNVIDGS----I 184 (205)
Q Consensus 118 ~l~~L~~L~l~~n-~l~~----~~p~~~~~l~~L~~l~l~~n~l~~----~~p~~~~~l~~L~~L~ls~n~l~~~----~ 184 (205)
.-+.|++|++++| .+.. .+.+.+..-+.|+.|+|++|.+.. .+.+.+..-+.|+.|+++.|.|... +
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al 118 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL 118 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence 3455666666664 5532 123445556778888888888873 3344555568899999999999743 3
Q ss_pred ChhhcCCCCCCEEEccCC
Q 043006 185 PSGIRNLSNLFNLNLGYN 202 (205)
Q Consensus 185 p~~~~~l~~L~~L~ls~N 202 (205)
...+..-+.|+.|+|++|
T Consensus 119 a~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 119 LRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHTTTTCCCSEEECCCC
T ss_pred HHHHhhCCceeEEECCCC
Confidence 345666677999999865
No 163
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=96.97 E-value=0.0015 Score=52.79 Aligned_cols=102 Identities=8% Similarity=-0.020 Sum_probs=75.1
Q ss_pred cccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEcccccCCCCCchhccCCCCC
Q 043006 91 HLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKL 170 (205)
Q Consensus 91 ~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~~~~l~~L 170 (205)
.+.....|+.+.+..+ ++..-...|..+.+|+.+++..+ ++......|.++++|+.+++..+ ++..-...|.++++|
T Consensus 292 ~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L 368 (394)
T 4fs7_A 292 TFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINL 368 (394)
T ss_dssp TTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTC
T ss_pred cccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCC
Confidence 3556677888888654 44333556889999999999754 66344577999999999999876 664445678899999
Q ss_pred CeeecccCcCcccCChhhcCCCCCCEE
Q 043006 171 EMLDAMFNVIDGSIPSGIRNLSNLFNL 197 (205)
Q Consensus 171 ~~L~ls~n~l~~~~p~~~~~l~~L~~L 197 (205)
+.+++..+ ++ .+...|.++++|+.+
T Consensus 369 ~~i~lp~~-~~-~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 369 KKVELPKR-LE-QYRYDFEDTTKFKWI 393 (394)
T ss_dssp CEEEEEGG-GG-GGGGGBCTTCEEEEE
T ss_pred CEEEECCC-CE-EhhheecCCCCCcEE
Confidence 99999865 33 455568888887754
No 164
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.95 E-value=0.0056 Score=48.99 Aligned_cols=115 Identities=13% Similarity=0.007 Sum_probs=77.8
Q ss_pred cEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEcc
Q 043006 73 RVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSLC 152 (205)
Q Consensus 73 ~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~ 152 (205)
.++.+.+..+ ++..-...+.....|+.+.+..+ ++..-...|..+.+|+.+.+..+.++..-...|.++.+|+.+.+.
T Consensus 241 ~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp 318 (379)
T 4h09_A 241 ALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLP 318 (379)
T ss_dssp SCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECC
T ss_pred cceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcC
Confidence 3455555443 33233445677788999998654 442334568889999999999888884445779999999999997
Q ss_pred cccCCCCCchhccCCCCCCeeecccCcCcccCC-hhhcCCC
Q 043006 153 NNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIP-SGIRNLS 192 (205)
Q Consensus 153 ~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p-~~~~~l~ 192 (205)
.+ ++..-...|.++.+|+.+.+..+ ++ .+. .+|.++.
T Consensus 319 ~~-l~~I~~~aF~~C~~L~~i~ip~~-v~-~I~~~aF~~c~ 356 (379)
T 4h09_A 319 TA-LKTIQVYAFKNCKALSTISYPKS-IT-LIESGAFEGSS 356 (379)
T ss_dssp TT-CCEECTTTTTTCTTCCCCCCCTT-CC-EECTTTTTTSS
T ss_pred cc-ccEEHHHHhhCCCCCCEEEECCc-cC-EEchhHhhCCC
Confidence 54 55333467888999999988654 44 333 3454443
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=56.40 E-value=21 Score=22.42 Aligned_cols=40 Identities=15% Similarity=0.014 Sum_probs=23.6
Q ss_pred ccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEccc
Q 043006 113 AHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSLCN 153 (205)
Q Consensus 113 p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~ 153 (205)
...|..+.+|+.+.+..+ ++..-...|.++.+|+.+.+.+
T Consensus 13 ~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 13 KSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp SCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred HHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 345666666776666553 3323345566777777777654
No 166
>3ox7_P MH027; urokinase-type plasminogen activator, peptidyl inhibitor, pharmacophore, hydrolase, hydrolase-hydrolase inhibitor COM; HET: PG4; 1.58A {Homo sapiens} PDB: 3oy5_P 3oy6_P
Probab=32.27 E-value=11 Score=16.30 Aligned_cols=9 Identities=33% Similarity=1.162 Sum_probs=6.8
Q ss_pred CCCccccee
Q 043006 58 PICNWIGIS 66 (205)
Q Consensus 58 ~~c~w~gv~ 66 (205)
.-|+|.|+.
T Consensus 6 gacswrgle 14 (23)
T 3ox7_P 6 GACSWRGLE 14 (26)
T ss_pred cccccccch
Confidence 468999864
Done!