Query 043008
Match_columns 517
No_of_seqs 536 out of 3665
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 11:52:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043008.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043008hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 100.0 8.8E-45 1.9E-49 420.5 36.9 436 1-490 598-1106(1153)
2 PLN00113 leucine-rich repeat r 99.9 8.2E-25 1.8E-29 252.5 15.2 271 7-282 85-369 (968)
3 PLN00113 leucine-rich repeat r 99.9 3E-24 6.6E-29 247.8 13.7 268 12-283 138-442 (968)
4 KOG0444 Cytoskeletal regulator 99.9 5.5E-24 1.2E-28 216.6 -4.5 251 6-262 94-382 (1255)
5 PLN03210 Resistant to P. syrin 99.8 3.6E-20 7.8E-25 215.6 20.3 281 7-301 580-907 (1153)
6 KOG0444 Cytoskeletal regulator 99.8 3.7E-22 7.9E-27 203.5 -3.3 275 5-282 22-329 (1255)
7 KOG4194 Membrane glycoprotein 99.8 7E-20 1.5E-24 186.0 6.4 219 10-230 74-302 (873)
8 PRK15387 E3 ubiquitin-protein 99.8 1.5E-18 3.2E-23 189.7 16.0 247 3-283 212-459 (788)
9 KOG0472 Leucine-rich repeat pr 99.8 1.3E-21 2.8E-26 190.8 -9.5 274 13-300 159-530 (565)
10 KOG4194 Membrane glycoprotein 99.8 1.7E-19 3.8E-24 183.1 3.5 225 12-239 100-334 (873)
11 KOG0472 Leucine-rich repeat pr 99.7 3E-21 6.6E-26 188.2 -11.0 259 12-282 43-310 (565)
12 PRK15387 E3 ubiquitin-protein 99.7 8.5E-16 1.8E-20 168.2 17.0 234 14-282 201-435 (788)
13 PRK15370 E3 ubiquitin-protein 99.7 2E-16 4.3E-21 174.0 10.9 215 15-251 179-397 (754)
14 PRK15370 E3 ubiquitin-protein 99.7 3.5E-16 7.6E-21 172.0 12.7 215 3-240 189-406 (754)
15 KOG0617 Ras suppressor protein 99.6 5.9E-18 1.3E-22 147.8 -6.0 90 4-96 23-113 (264)
16 KOG0618 Serine/threonine phosp 99.6 1.9E-17 4.1E-22 176.6 -4.4 268 2-279 229-510 (1081)
17 KOG4237 Extracellular matrix p 99.5 5.3E-17 1.1E-21 158.6 -7.3 282 3-290 57-367 (498)
18 KOG0617 Ras suppressor protein 99.5 1.1E-15 2.5E-20 133.6 -4.7 159 35-239 30-190 (264)
19 KOG0618 Serine/threonine phosp 99.5 3.5E-15 7.5E-20 159.5 -3.4 218 15-241 46-306 (1081)
20 KOG4237 Extracellular matrix p 99.4 3.2E-15 7E-20 146.3 -6.6 227 3-231 78-356 (498)
21 cd00116 LRR_RI Leucine-rich re 99.4 4.7E-14 1E-18 142.1 -2.2 104 129-232 137-261 (319)
22 cd00116 LRR_RI Leucine-rich re 99.3 1.6E-13 3.5E-18 138.2 -0.0 220 12-232 21-289 (319)
23 KOG0532 Leucine-rich repeat (L 99.0 9E-12 1.9E-16 127.5 -3.7 193 18-238 54-250 (722)
24 COG4886 Leucine-rich repeat (L 99.0 4.7E-10 1E-14 116.7 6.4 191 42-237 97-293 (394)
25 KOG4658 Apoptotic ATPase [Sign 99.0 2.1E-10 4.7E-15 128.5 3.5 250 6-260 515-788 (889)
26 KOG4658 Apoptotic ATPase [Sign 98.9 2.7E-10 5.8E-15 127.8 2.0 230 6-238 537-787 (889)
27 COG4886 Leucine-rich repeat (L 98.9 1.1E-09 2.4E-14 114.0 5.5 195 18-219 97-298 (394)
28 KOG3207 Beta-tubulin folding c 98.8 1E-09 2.2E-14 109.5 0.1 194 35-229 118-334 (505)
29 KOG0532 Leucine-rich repeat (L 98.7 3.3E-10 7.1E-15 116.2 -5.6 154 13-173 97-254 (722)
30 KOG1259 Nischarin, modulator o 98.7 2.6E-09 5.6E-14 101.8 -0.3 121 107-230 283-408 (490)
31 KOG1259 Nischarin, modulator o 98.7 7E-09 1.5E-13 98.9 2.2 130 129-284 284-414 (490)
32 KOG3207 Beta-tubulin folding c 98.7 2.1E-09 4.5E-14 107.3 -2.0 199 12-211 119-339 (505)
33 PF14580 LRR_9: Leucine-rich r 98.6 1.6E-08 3.6E-13 91.9 3.4 88 6-97 11-100 (175)
34 PLN03150 hypothetical protein; 98.6 6.9E-08 1.5E-12 106.0 8.1 101 40-140 420-526 (623)
35 KOG1909 Ran GTPase-activating 98.6 6.4E-09 1.4E-13 101.2 -0.2 219 12-232 28-309 (382)
36 PF14580 LRR_9: Leucine-rich r 98.6 5.5E-08 1.2E-12 88.5 4.9 35 197-231 87-123 (175)
37 PRK15386 type III secretion pr 98.5 3.3E-07 7.1E-12 93.4 8.8 63 81-146 48-112 (426)
38 PLN03150 hypothetical protein; 98.5 3E-07 6.6E-12 100.9 8.3 103 153-255 419-528 (623)
39 KOG0531 Protein phosphatase 1, 98.4 3.4E-08 7.4E-13 103.4 -2.3 196 36-237 70-270 (414)
40 PF13855 LRR_8: Leucine rich r 98.3 7E-07 1.5E-11 66.6 4.0 57 14-71 1-59 (61)
41 KOG0531 Protein phosphatase 1, 98.3 6E-08 1.3E-12 101.6 -3.2 209 13-230 71-286 (414)
42 PRK15386 type III secretion pr 98.3 3.4E-06 7.4E-11 86.1 9.1 132 13-162 51-187 (426)
43 KOG2120 SCF ubiquitin ligase, 98.3 1.1E-08 2.3E-13 97.7 -8.4 170 39-208 186-373 (419)
44 PF13855 LRR_8: Leucine rich r 98.2 1.2E-06 2.6E-11 65.3 4.2 58 38-96 1-60 (61)
45 KOG1909 Ran GTPase-activating 98.0 1E-06 2.2E-11 86.1 -0.6 241 33-282 25-311 (382)
46 KOG2120 SCF ubiquitin ligase, 97.9 1.5E-07 3.3E-12 89.9 -8.4 172 15-187 186-374 (419)
47 KOG1859 Leucine-rich repeat pr 97.8 1.3E-06 2.9E-11 92.5 -3.7 126 131-283 166-293 (1096)
48 PF12799 LRR_4: Leucine Rich r 97.8 2.9E-05 6.2E-10 53.6 4.0 42 198-240 1-42 (44)
49 PF12799 LRR_4: Leucine Rich r 97.7 2.8E-05 6E-10 53.7 2.8 35 14-49 1-35 (44)
50 KOG3665 ZYG-1-like serine/thre 97.6 6.4E-06 1.4E-10 90.7 -2.2 145 85-230 122-284 (699)
51 KOG2982 Uncharacterized conser 97.5 3.8E-05 8.3E-10 73.8 1.9 183 37-238 70-266 (418)
52 KOG4579 Leucine-rich repeat (L 97.5 1.4E-05 2.9E-10 68.5 -1.4 112 173-286 50-163 (177)
53 KOG1859 Leucine-rich repeat pr 97.2 1.1E-05 2.5E-10 85.6 -6.6 101 13-119 186-290 (1096)
54 KOG1644 U2-associated snRNP A' 97.1 0.00078 1.7E-08 61.6 5.6 79 15-96 43-124 (233)
55 KOG3665 ZYG-1-like serine/thre 97.1 0.00016 3.4E-09 79.8 1.4 105 14-120 122-232 (699)
56 KOG1644 U2-associated snRNP A' 97.1 0.0013 2.9E-08 60.1 6.4 83 12-96 17-99 (233)
57 COG5238 RNA1 Ran GTPase-activa 97.0 0.00018 3.9E-09 68.4 -0.1 151 13-165 29-227 (388)
58 KOG4341 F-box protein containi 96.9 7.5E-05 1.6E-09 75.0 -3.8 245 12-256 162-440 (483)
59 KOG4341 F-box protein containi 96.5 0.00024 5.2E-09 71.4 -3.1 226 12-237 188-442 (483)
60 KOG4579 Leucine-rich repeat (L 96.5 0.00017 3.7E-09 61.8 -3.6 86 151-238 52-139 (177)
61 KOG2982 Uncharacterized conser 96.4 0.00067 1.4E-08 65.5 -0.3 57 106-162 95-156 (418)
62 KOG2739 Leucine-rich acidic nu 96.3 0.0021 4.5E-08 61.2 2.0 90 30-120 35-128 (260)
63 KOG2739 Leucine-rich acidic nu 96.2 0.0033 7.2E-08 59.8 3.1 86 12-99 41-130 (260)
64 COG5238 RNA1 Ran GTPase-activa 96.1 0.00095 2.1E-08 63.7 -1.5 86 33-119 25-131 (388)
65 KOG1947 Leucine rich repeat pr 95.4 0.0024 5.1E-08 67.9 -1.8 109 13-121 187-308 (482)
66 PF00560 LRR_1: Leucine Rich R 95.2 0.0079 1.7E-07 34.6 0.8 21 199-219 1-21 (22)
67 KOG2123 Uncharacterized conser 95.1 0.0012 2.6E-08 63.2 -4.6 86 13-102 18-105 (388)
68 PF13306 LRR_5: Leucine rich r 94.9 0.088 1.9E-06 44.9 6.8 104 6-117 2-112 (129)
69 KOG2123 Uncharacterized conser 94.6 0.0015 3.3E-08 62.5 -5.2 77 12-91 39-123 (388)
70 PF13306 LRR_5: Leucine rich r 94.4 0.18 4E-06 42.9 7.7 13 57-69 8-20 (129)
71 PF13504 LRR_7: Leucine rich r 94.3 0.032 7E-07 29.9 1.7 17 198-214 1-17 (17)
72 PF07725 LRR_3: Leucine Rich R 93.7 0.043 9.3E-07 30.6 1.4 20 15-35 1-20 (20)
73 KOG1947 Leucine rich repeat pr 93.7 0.0061 1.3E-07 64.7 -3.8 35 60-94 187-223 (482)
74 PF00560 LRR_1: Leucine Rich R 93.0 0.055 1.2E-06 31.1 1.3 21 15-36 1-21 (22)
75 smart00369 LRR_TYP Leucine-ric 90.0 0.28 6E-06 29.2 2.1 21 197-217 1-21 (26)
76 smart00370 LRR Leucine-rich re 90.0 0.28 6E-06 29.2 2.1 21 197-217 1-21 (26)
77 KOG3864 Uncharacterized conser 82.2 0.34 7.3E-06 44.7 -0.6 34 197-230 150-185 (221)
78 KOG0473 Leucine-rich repeat pr 80.4 0.057 1.2E-06 50.7 -6.3 80 13-95 41-121 (326)
79 KOG3864 Uncharacterized conser 80.0 0.19 4.1E-06 46.4 -3.0 60 63-122 103-165 (221)
80 smart00364 LRR_BAC Leucine-ric 78.3 1.2 2.7E-05 26.6 1.1 18 198-215 2-19 (26)
81 smart00370 LRR Leucine-rich re 77.3 1.6 3.5E-05 25.8 1.5 18 14-32 2-19 (26)
82 smart00369 LRR_TYP Leucine-ric 77.3 1.6 3.5E-05 25.8 1.5 18 14-32 2-19 (26)
83 KOG4308 LRR-containing protein 68.9 0.047 1E-06 57.9 -11.4 82 150-231 202-300 (478)
84 smart00367 LRR_CC Leucine-rich 67.5 4.2 9.1E-05 24.1 1.7 17 220-236 1-17 (26)
85 smart00365 LRR_SD22 Leucine-ri 66.4 4.6 0.0001 24.2 1.7 16 198-213 2-17 (26)
86 KOG3763 mRNA export factor TAP 58.8 3.5 7.6E-05 43.8 0.3 65 35-100 215-285 (585)
87 PF13516 LRR_6: Leucine Rich r 58.2 4.8 0.0001 23.2 0.7 14 198-211 2-15 (24)
88 KOG0473 Leucine-rich repeat pr 57.7 0.27 5.9E-06 46.3 -7.1 82 150-232 40-122 (326)
89 KOG4308 LRR-containing protein 55.0 0.16 3.4E-06 54.1 -10.6 81 16-97 89-184 (478)
90 smart00368 LRR_RI Leucine rich 44.4 17 0.00038 21.9 1.7 14 198-211 2-15 (28)
91 KOG3763 mRNA export factor TAP 41.3 13 0.00028 39.7 1.2 68 58-125 215-287 (585)
92 PF11763 DIPSY: Cell-wall adhe 24.4 40 0.00086 28.2 1.1 14 467-480 38-51 (123)
93 TIGR00864 PCC polycystin catio 21.8 49 0.0011 42.3 1.7 39 204-290 1-40 (2740)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=8.8e-45 Score=420.51 Aligned_cols=436 Identities=29% Similarity=0.417 Sum_probs=317.9
Q ss_pred CCCCCCCCCCCCCCCccEEeccCCCCCccccccCCCCCCccEEEccCCCCCCCCCCCCCCCCccEEeeccccCCcccCcc
Q 043008 1 NYPLRTLPSNFKPKNLVELNLPYGHKVVQIWEGKKRAFKLKFINLSHSQCHIKIPDPSETPNLERIDILNCTNPACVLSS 80 (517)
Q Consensus 1 ~~pl~~lP~~f~~~~L~~L~L~~n~~l~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~~~~l~~~p~s 80 (517)
+||++++|+.|.+++|++|+|++| +++.+|.+++.+++|+.|+|++|..++.+|+++.+++|+.|+|++|..+..+|.+
T Consensus 598 ~~~l~~lP~~f~~~~L~~L~L~~s-~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~s 676 (1153)
T PLN03210 598 KYPLRCMPSNFRPENLVKLQMQGS-KLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSS 676 (1153)
T ss_pred CCCCCCCCCcCCccCCcEEECcCc-cccccccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchh
Confidence 589999999999999999999999 9999999999999999999999988999999999999999999999999999999
Q ss_pred ccCCCCCCEEeccCCcCccccCCCCCCCCCcEEEEecCCCCCccCCCCCCCcEEEeecccCcccCCcCC-----------
Q 043008 81 ITNFNHLSMLCFRHCKNLRHFPNNLHFVCPIIIDFSYCVNLTEFPQISGNIIDLILTETAIEEVPSSTE----------- 149 (517)
Q Consensus 81 i~~l~~L~~L~L~~~~~l~~lp~~~~l~sL~~L~L~~c~~l~~~p~~~~~L~~L~L~~~~i~~lp~~i~----------- 149 (517)
++++++|+.|++++|..++.+|..+++++|+.|++++|..++.+|....+|+.|++++|.+..+|..+.
T Consensus 677 i~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~ 756 (1153)
T PLN03210 677 IQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCE 756 (1153)
T ss_pred hhccCCCCEEeCCCCCCcCccCCcCCCCCCCEEeCCCCCCccccccccCCcCeeecCCCccccccccccccccccccccc
Confidence 999999999999999999999998899999999999999999999988999999999999888876431
Q ss_pred -------------------CCCCccEEEcccCcCCccccccccCCCCCcEEEcCCC--CCcCCccCCCC-----------
Q 043008 150 -------------------CLTNLQYLFLCSCKKLKRVSTSICKFKSLVWLSLNND--LTAIPQEIGCL----------- 197 (517)
Q Consensus 150 -------------------~l~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~Ls~~--l~~lp~~l~~l----------- 197 (517)
..++|+.|++++|.....+|..++++++|+.|+++++ ++.+|..+ .+
T Consensus 757 ~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c 835 (1153)
T PLN03210 757 MKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGC 835 (1153)
T ss_pred cchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCC
Confidence 1236777777777777778888888888888888753 45555433 22
Q ss_pred ----------CCCCEEEecCCCCCcchhhhhcCCCCCEEeccCCCCCCcCCCCC---CCccEEecccccCcCcCCCCCch
Q 043008 198 ----------SSLECLNLGGNNFEGLPASIKQISRLECLDLSYCNSLQSLPELP---LHLEVLLATNCKRLQSLPEIPSC 264 (517)
Q Consensus 198 ----------~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~l~---~~L~~L~~~~c~~l~~l~~~~~~ 264 (517)
.+|+.|+|++|.++.+|.++..+++|+.|+|++|+.++.+|..+ .+|+.|++.+|.+|..++....
T Consensus 836 ~~L~~~p~~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~l~~~- 914 (1153)
T PLN03210 836 SRLRTFPDISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEASWNGS- 914 (1153)
T ss_pred CccccccccccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccccccCCCC-
Confidence 35667777777788888889999999999999999999888654 5677778888988876543211
Q ss_pred hhhcchhhHHhhhcCCCCCcceeeeeEEeeeCCCCcchHHHhhhcchhhHHHHHHHHHHHHhHhHhhhcccCCCCcccCc
Q 043008 265 LEELDASVLEKLSKHSFGEEYRIWSIKFNFTNCLKLMNEEANKKNLADSRLRIQHMAIASLRLFWELRQFSLPLNRYHPL 344 (517)
Q Consensus 265 L~~L~~l~~~~Ls~n~~~~~~~l~~l~~~~~nC~kL~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (517)
+. ....+++|......... ...|.||++|+ +++. + +. ...+
T Consensus 915 ----~~-~~~~~~~n~~~~~p~~~--~l~f~nC~~L~-~~a~---l-------~~------------------~~~~--- 955 (1153)
T PLN03210 915 ----PS-EVAMATDNIHSKLPSTV--CINFINCFNLD-QEAL---L-------QQ------------------QSIF--- 955 (1153)
T ss_pred ----ch-hhhhhcccccccCCchh--ccccccccCCC-chhh---h-------cc------------------cccc---
Confidence 00 11222233222111112 24899999996 4441 1 10 1111
Q ss_pred cccccCCccEEEecCCCCCCCcccCCCccEEE-EECCCCCC-CCccceeEEEEEeeeCC---------ceeEEEecCCCc
Q 043008 345 EHRENLKGATIMLPGNNVPEFFINRSSGSEIT-LQLPQHCC-QNLMGFAVCAVLQQIDE---------ERDCFFVDFLMK 413 (517)
Q Consensus 345 ~~~~~~~~~~~~~Pg~~iP~wf~~q~~g~si~-i~lp~~~~-~~~~gf~~c~v~~~~~~---------~~~c~~~~~~~~ 413 (517)
..+++||.++|+||+||+.|++++ |++|+.|+ +.|.||++|+|++..+. .+.|.|.+..+.
T Consensus 956 --------~~~~l~g~evp~~f~hr~~g~sl~~i~l~~~~~~~~~~~f~~c~v~~~~~~~~~~~~~~~~~~c~~~~~~~~ 1027 (1153)
T PLN03210 956 --------KQLILSGEEVPSYFTHRTTGASLTNIPLLHISPCQPFFRFRACAVVDSESFFIISVSFDIQVCCRFIDRLGN 1027 (1153)
T ss_pred --------eEEECCCccCchhccCCcccceeeeeccCCcccCCCccceEEEEEEecCccccCCCceeEEEEEEEECCCCC
Confidence 157899999999999999999998 99999999 78999999999954332 356777766665
Q ss_pred eEEeeEEeeEEeccccccccccceEEEeeeeCcCCCC--CCCCCCceEEEEEEe--e--eeeEEeeeeeeeEecccCccc
Q 043008 414 TLSGRKIVRCYETIALRRQVTKTNVILGFRPLRNVGF--PDDNNRTVVPFKFSS--Q--YYVVKCCEVCPFWRRGIGTES 487 (517)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~s~hv~~~y~~~~~~~~--~~~~~~~~~~f~fs~--~--~~~v~~Cgv~~~~~~~~~~~~ 487 (517)
.++.....+.|. .....+|.+++........+. ..+.++++++++|.. . .++|++|||+++|++......
T Consensus 1028 ~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~cg~~~~~~~~~~~~~ 1103 (1153)
T PLN03210 1028 HFDSPYQPHVFS----VTKKGSHLVIFDCCFPLNEDNAPLAELNYDHVDIQFRLTNKNSQLKLKGCGIRLSEDDSSLNNT 1103 (1153)
T ss_pred ccccCCCceeEe----eeccccceEEecccccccccccchhccCCceeeEEEEEecCCCCeEEEeeeEEEeccCCCcccC
Confidence 443211111111 111222222222211100000 001124565555543 2 358999999999965544433
Q ss_pred ccc
Q 043008 488 QET 490 (517)
Q Consensus 488 ~~~ 490 (517)
-|+
T Consensus 1104 ~~~ 1106 (1153)
T PLN03210 1104 LPN 1106 (1153)
T ss_pred CCc
Confidence 333
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.92 E-value=8.2e-25 Score=252.53 Aligned_cols=271 Identities=24% Similarity=0.296 Sum_probs=202.5
Q ss_pred CCCCC-CCCCccEEeccCCCCCc-cccccCC-CCCCccEEEccCCCCCCCCCCCCCCCCccEEeeccccCCcccCccccC
Q 043008 7 LPSNF-KPKNLVELNLPYGHKVV-QIWEGKK-RAFKLKFINLSHSQCHIKIPDPSETPNLERIDILNCTNPACVLSSITN 83 (517)
Q Consensus 7 lP~~f-~~~~L~~L~L~~n~~l~-~l~~~~~-~l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~~~~l~~~p~si~~ 83 (517)
+|..| .+++|+.|+|++| .+. .+|..+. .+.+|++|+|++|.+...+|. ..+++|++|+|++|.....+|..+++
T Consensus 85 ~~~~~~~l~~L~~L~Ls~n-~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~-~~l~~L~~L~Ls~n~~~~~~p~~~~~ 162 (968)
T PLN00113 85 ISSAIFRLPYIQTINLSNN-QLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR-GSIPNLETLDLSNNMLSGEIPNDIGS 162 (968)
T ss_pred CChHHhCCCCCCEEECCCC-ccCCcCChHHhccCCCCCEEECcCCccccccCc-cccCCCCEEECcCCcccccCChHHhc
Confidence 34445 7888888888888 665 6776544 788888888888887666664 45788888888888777788888888
Q ss_pred CCCCCEEeccCCcCccccCCCC-CCCCCcEEEEecCCCCCccCCCCC---CCcEEEeecccCc-ccCCcCCCCCCccEEE
Q 043008 84 FNHLSMLCFRHCKNLRHFPNNL-HFVCPIIIDFSYCVNLTEFPQISG---NIIDLILTETAIE-EVPSSTECLTNLQYLF 158 (517)
Q Consensus 84 l~~L~~L~L~~~~~l~~lp~~~-~l~sL~~L~L~~c~~l~~~p~~~~---~L~~L~L~~~~i~-~lp~~i~~l~~L~~L~ 158 (517)
+++|++|++++|.....+|..+ ++++|++|++++|.....+|..++ +|+.|++++|.+. .+|..+.++++|+.|+
T Consensus 163 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 242 (968)
T PLN00113 163 FSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLD 242 (968)
T ss_pred CCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEE
Confidence 8888888888888777888877 888888888888877777776544 4578888888887 6788888888888888
Q ss_pred cccCcCCccccccccCCCCCcEEEcCCCC--CcCCccCCCCCCCCEEEecCCCCC-cchhhhhcCCCCCEEeccCCCCCC
Q 043008 159 LCSCKKLKRVSTSICKFKSLVWLSLNNDL--TAIPQEIGCLSSLECLNLGGNNFE-GLPASIKQISRLECLDLSYCNSLQ 235 (517)
Q Consensus 159 l~~~~~l~~lp~~l~~l~~L~~L~Ls~~l--~~lp~~l~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~c~~l~ 235 (517)
+++|...+.+|..++++++|+.|++++|. +.+|..+..+++|+.|+|++|.+. .+|..+.++++|+.|++++|....
T Consensus 243 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~ 322 (968)
T PLN00113 243 LVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTG 322 (968)
T ss_pred CcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCC
Confidence 88888878888888888888888887653 456777778888888888888776 477777788888888888766655
Q ss_pred cCCCCC---CCccEEecccccCcCcCCCCCchhhhcchhhHHhhhcCCCC
Q 043008 236 SLPELP---LHLEVLLATNCKRLQSLPEIPSCLEELDASVLEKLSKHSFG 282 (517)
Q Consensus 236 ~lp~l~---~~L~~L~~~~c~~l~~l~~~~~~L~~L~~l~~~~Ls~n~~~ 282 (517)
.+|..+ ++|+.|++.++. .....|..+..+..+..++|++|.+.
T Consensus 323 ~~~~~~~~l~~L~~L~L~~n~---l~~~~p~~l~~~~~L~~L~Ls~n~l~ 369 (968)
T PLN00113 323 KIPVALTSLPRLQVLQLWSNK---FSGEIPKNLGKHNNLTVLDLSTNNLT 369 (968)
T ss_pred cCChhHhcCCCCCEEECcCCC---CcCcCChHHhCCCCCcEEECCCCeeE
Confidence 666543 455666655543 22344555566666666666666544
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.91 E-value=3e-24 Score=247.83 Aligned_cols=268 Identities=20% Similarity=0.218 Sum_probs=181.9
Q ss_pred CCCCccEEeccCCCCCc-cccccCCCCCCccEEEccCCCCCCCCCC-CCCCCCccEEeeccccCCcccCccccCCCCCCE
Q 043008 12 KPKNLVELNLPYGHKVV-QIWEGKKRAFKLKFINLSHSQCHIKIPD-PSETPNLERIDILNCTNPACVLSSITNFNHLSM 89 (517)
Q Consensus 12 ~~~~L~~L~L~~n~~l~-~l~~~~~~l~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~~~~l~~~p~si~~l~~L~~ 89 (517)
.+++|++|+|++| .+. .+|..+..+++|++|+|++|.+...+|. +.++++|++|+|++|.....+|..++++++|+.
T Consensus 138 ~l~~L~~L~Ls~n-~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 216 (968)
T PLN00113 138 SIPNLETLDLSNN-MLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKW 216 (968)
T ss_pred ccCCCCEEECcCC-cccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccE
Confidence 4677888888888 665 5677778888888888888877667774 777888888888888777777778888888888
Q ss_pred EeccCCcCccccCCCC-CCCCCcEEEEecCCCCCccCCCC---CCCcEEEeecccCc-ccCCcCCCCCCccEEEcccCcC
Q 043008 90 LCFRHCKNLRHFPNNL-HFVCPIIIDFSYCVNLTEFPQIS---GNIIDLILTETAIE-EVPSSTECLTNLQYLFLCSCKK 164 (517)
Q Consensus 90 L~L~~~~~l~~lp~~~-~l~sL~~L~L~~c~~l~~~p~~~---~~L~~L~L~~~~i~-~lp~~i~~l~~L~~L~l~~~~~ 164 (517)
|++++|.....+|..+ ++++|++|++++|.....+|..+ .+|+.|++++|.+. .+|.++.++++|+.|++++|.+
T Consensus 217 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l 296 (968)
T PLN00113 217 IYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSL 296 (968)
T ss_pred EECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCee
Confidence 8888877777777777 77888888888776666666544 34577777777776 5677777777777777777777
Q ss_pred CccccccccCCCCCcEEEcCCCC--CcCCccCCCCCCCCEEEecCCCCC-cchhhhhcCCCCCEEeccCCCCCCcCCCCC
Q 043008 165 LKRVSTSICKFKSLVWLSLNNDL--TAIPQEIGCLSSLECLNLGGNNFE-GLPASIKQISRLECLDLSYCNSLQSLPELP 241 (517)
Q Consensus 165 l~~lp~~l~~l~~L~~L~Ls~~l--~~lp~~l~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~c~~l~~lp~l~ 241 (517)
.+.+|..+.++++|+.|++++|. +.+|..+..+++|+.|+|++|.+. .+|..+..+++|+.|++++|+....+|+..
T Consensus 297 ~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~ 376 (968)
T PLN00113 297 SGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGL 376 (968)
T ss_pred ccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhH
Confidence 77777777777777777776543 345666666677777777777665 466666666666666666654433333221
Q ss_pred ---------------------------CCccEEecccccCcCcCCCCCchhhhcchhhHHhhhcCCCCC
Q 043008 242 ---------------------------LHLEVLLATNCKRLQSLPEIPSCLEELDASVLEKLSKHSFGE 283 (517)
Q Consensus 242 ---------------------------~~L~~L~~~~c~~l~~l~~~~~~L~~L~~l~~~~Ls~n~~~~ 283 (517)
++|+.|++.+|. .....|..+..++.+..++|++|.+.+
T Consensus 377 ~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~---l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 442 (968)
T PLN00113 377 CSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNS---FSGELPSEFTKLPLVYFLDISNNNLQG 442 (968)
T ss_pred hCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCE---eeeECChhHhcCCCCCEEECcCCcccC
Confidence 234444433332 112344556666666666676666553
No 4
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.86 E-value=5.5e-24 Score=216.64 Aligned_cols=251 Identities=25% Similarity=0.311 Sum_probs=204.6
Q ss_pred CCCCC-CCCCCccEEeccCCCCCccccccCCCCCCccEEEccCCCCCCCCCC--CCCCCCccEEeeccccCCcccCcccc
Q 043008 6 TLPSN-FKPKNLVELNLPYGHKVVQIWEGKKRAFKLKFINLSHSQCHIKIPD--PSETPNLERIDILNCTNPACVLSSIT 82 (517)
Q Consensus 6 ~lP~~-f~~~~L~~L~L~~n~~l~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~--l~~l~~L~~L~L~~~~~l~~~p~si~ 82 (517)
.+|.+ |.++.|..|||++| ++++.|.++...+++-.|+||+|+ +..||. +.+++.|-.|+|++| .+..+|+.+.
T Consensus 94 GiP~diF~l~dLt~lDLShN-qL~EvP~~LE~AKn~iVLNLS~N~-IetIPn~lfinLtDLLfLDLS~N-rLe~LPPQ~R 170 (1255)
T KOG0444|consen 94 GIPTDIFRLKDLTILDLSHN-QLREVPTNLEYAKNSIVLNLSYNN-IETIPNSLFINLTDLLFLDLSNN-RLEMLPPQIR 170 (1255)
T ss_pred CCCchhcccccceeeecchh-hhhhcchhhhhhcCcEEEEcccCc-cccCCchHHHhhHhHhhhccccc-hhhhcCHHHH
Confidence 46766 79999999999999 999999999999999999999998 567775 788999999999987 6788999999
Q ss_pred CCCCCCEEeccCCcCc-------------------------cccCCCC-CCCCCcEEEEecCCCCCccCCCC---CCCcE
Q 043008 83 NFNHLSMLCFRHCKNL-------------------------RHFPNNL-HFVCPIIIDFSYCVNLTEFPQIS---GNIID 133 (517)
Q Consensus 83 ~l~~L~~L~L~~~~~l-------------------------~~lp~~~-~l~sL~~L~L~~c~~l~~~p~~~---~~L~~ 133 (517)
.|..|++|+|++|+.. ..+|.++ ++.+|..+|++. +.+..+|+.+ .+|+.
T Consensus 171 RL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~-N~Lp~vPecly~l~~Lrr 249 (1255)
T KOG0444|consen 171 RLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSE-NNLPIVPECLYKLRNLRR 249 (1255)
T ss_pred HHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccc-cCCCcchHHHhhhhhhhe
Confidence 9999999999988643 2345556 666677777765 4566666653 34577
Q ss_pred EEeecccCcccCCcCCCCCCccEEEcccCcCCccccccccCCCCCcEEEcCCC---CCcCCccCCCCCCCCEEEecCCCC
Q 043008 134 LILTETAIEEVPSSTECLTNLQYLFLCSCKKLKRVSTSICKFKSLVWLSLNND---LTAIPQEIGCLSSLECLNLGGNNF 210 (517)
Q Consensus 134 L~L~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~Ls~~---l~~lp~~l~~l~~L~~L~Ls~n~l 210 (517)
|+|++|.|+++....+.+.+|++|+++.| .+..+|..+++++.|+.|.+.+| .+.+|..++.+.+|+.+..++|++
T Consensus 250 LNLS~N~iteL~~~~~~W~~lEtLNlSrN-QLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~L 328 (1255)
T KOG0444|consen 250 LNLSGNKITELNMTEGEWENLETLNLSRN-QLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKL 328 (1255)
T ss_pred eccCcCceeeeeccHHHHhhhhhhccccc-hhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhcccc
Confidence 88888888888777777888888888887 45678999999999999998664 388999999999999999999999
Q ss_pred CcchhhhhcCCCCCEEeccCCCCCCcCCCC---CCCccEEecccccCcCcCCCCC
Q 043008 211 EGLPASIKQISRLECLDLSYCNSLQSLPEL---PLHLEVLLATNCKRLQSLPEIP 262 (517)
Q Consensus 211 ~~lp~~l~~l~~L~~L~L~~c~~l~~lp~l---~~~L~~L~~~~c~~l~~l~~~~ 262 (517)
.-+|.++..|..|+.|.|+ ||++..+|+. .+.|+.|++.+.++|-.-+.+.
T Consensus 329 ElVPEglcRC~kL~kL~L~-~NrLiTLPeaIHlL~~l~vLDlreNpnLVMPPKP~ 382 (1255)
T KOG0444|consen 329 ELVPEGLCRCVKLQKLKLD-HNRLITLPEAIHLLPDLKVLDLRENPNLVMPPKPN 382 (1255)
T ss_pred ccCchhhhhhHHHHHhccc-ccceeechhhhhhcCCcceeeccCCcCccCCCCcc
Confidence 9999999999999999999 5888889974 4677777777776666544443
No 5
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.84 E-value=3.6e-20 Score=215.62 Aligned_cols=281 Identities=22% Similarity=0.331 Sum_probs=170.2
Q ss_pred CCCCC--CCCCccEEeccCCCCCccccccCCCCCCccEEEccCCCCCCCCC-CCCCCCCccEEeeccccCCcccCccccC
Q 043008 7 LPSNF--KPKNLVELNLPYGHKVVQIWEGKKRAFKLKFINLSHSQCHIKIP-DPSETPNLERIDILNCTNPACVLSSITN 83 (517)
Q Consensus 7 lP~~f--~~~~L~~L~L~~n~~l~~l~~~~~~l~~L~~L~Ls~~~~l~~~p-~l~~l~~L~~L~L~~~~~l~~~p~si~~ 83 (517)
+|..| -+.+|+.|.+.++ .++.+|..+ ...+|+.|+|++|. +..+| .+..+++|+.|+|++|..+..+|. ++.
T Consensus 580 lp~~~~~lp~~Lr~L~~~~~-~l~~lP~~f-~~~~L~~L~L~~s~-l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~ 655 (1153)
T PLN03210 580 LPEGFDYLPPKLRLLRWDKY-PLRCMPSNF-RPENLVKLQMQGSK-LEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSM 655 (1153)
T ss_pred cCcchhhcCcccEEEEecCC-CCCCCCCcC-CccCCcEEECcCcc-ccccccccccCCCCCEEECCCCCCcCcCCc-ccc
Confidence 45554 2456888888877 778887776 46788888888887 44455 477788888888888777777764 778
Q ss_pred CCCCCEEeccCCcCccccCCCC-CCCCCcEEEEecCCCCCccCCC--CCCCcEEEeecccC-cccCCcCCCCCCccEEEc
Q 043008 84 FNHLSMLCFRHCKNLRHFPNNL-HFVCPIIIDFSYCVNLTEFPQI--SGNIIDLILTETAI-EEVPSSTECLTNLQYLFL 159 (517)
Q Consensus 84 l~~L~~L~L~~~~~l~~lp~~~-~l~sL~~L~L~~c~~l~~~p~~--~~~L~~L~L~~~~i-~~lp~~i~~l~~L~~L~l 159 (517)
+++|+.|+|++|..+..+|..+ .+++|+.|++++|..++.+|.. +.+|+.|+++++.. ..+|.. .++|+.|++
T Consensus 656 l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L 732 (1153)
T PLN03210 656 ATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFPDI---STNISWLDL 732 (1153)
T ss_pred CCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcCCCCCCCEEeCCCCCCccccccc---cCCcCeeec
Confidence 8888888888888888888887 8888888888888888888864 45678888887643 345532 457788888
Q ss_pred ccCcCCccccccccCCCCCcEE-------------------------------EcCCC--CCcCCccCCCCCCCCEEEec
Q 043008 160 CSCKKLKRVSTSICKFKSLVWL-------------------------------SLNND--LTAIPQEIGCLSSLECLNLG 206 (517)
Q Consensus 160 ~~~~~l~~lp~~l~~l~~L~~L-------------------------------~Ls~~--l~~lp~~l~~l~~L~~L~Ls 206 (517)
++|.+ ..+|..+ .+++|+.| +++++ +..+|..++++++|+.|+|+
T Consensus 733 ~~n~i-~~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls 810 (1153)
T PLN03210 733 DETAI-EEFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIE 810 (1153)
T ss_pred CCCcc-ccccccc-cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECC
Confidence 87753 4455433 23444444 44332 23344444455555555554
Q ss_pred CC-CCCcchhhhhcCCCCCEEeccCCCCCCcCCCCCCCccEEecccccCcCcCCCCCchhhhcchhhHHhhhcC-CCCCc
Q 043008 207 GN-NFEGLPASIKQISRLECLDLSYCNSLQSLPELPLHLEVLLATNCKRLQSLPEIPSCLEELDASVLEKLSKH-SFGEE 284 (517)
Q Consensus 207 ~n-~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~l~~~L~~L~~~~c~~l~~l~~~~~~L~~L~~l~~~~Ls~n-~~~~~ 284 (517)
+| +++.+|..+ .+++|+.|++++|+.++.+|..+.+++.|++.+. . +...|.++..++.+..++|+++ .+...
T Consensus 811 ~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n-~---i~~iP~si~~l~~L~~L~L~~C~~L~~l 885 (1153)
T PLN03210 811 NCINLETLPTGI-NLESLESLDLSGCSRLRTFPDISTNISDLNLSRT-G---IEEVPWWIEKFSNLSFLDMNGCNNLQRV 885 (1153)
T ss_pred CCCCcCeeCCCC-CccccCEEECCCCCccccccccccccCEeECCCC-C---CccChHHHhcCCCCCEEECCCCCCcCcc
Confidence 44 344444333 4445555555555555444444444444444331 1 1223444555555555555442 12110
Q ss_pred ----ceeeee-EEeeeCCCCcc
Q 043008 285 ----YRIWSI-KFNFTNCLKLM 301 (517)
Q Consensus 285 ----~~l~~l-~~~~~nC~kL~ 301 (517)
..+..+ .+.|.+|.+|.
T Consensus 886 ~~~~~~L~~L~~L~l~~C~~L~ 907 (1153)
T PLN03210 886 SLNISKLKHLETVDFSDCGALT 907 (1153)
T ss_pred CcccccccCCCeeecCCCcccc
Confidence 111111 13677888774
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.82 E-value=3.7e-22 Score=203.48 Aligned_cols=275 Identities=23% Similarity=0.295 Sum_probs=186.4
Q ss_pred CCCCCCC-CCCCccEEeccCCCCCccccccCCCCCCccEEEccCCCCCCCCCCCCCCCCccEEeeccccCC-cccCcccc
Q 043008 5 RTLPSNF-KPKNLVELNLPYGHKVVQIWEGKKRAFKLKFINLSHSQCHIKIPDPSETPNLERIDILNCTNP-ACVLSSIT 82 (517)
Q Consensus 5 ~~lP~~f-~~~~L~~L~L~~n~~l~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~~~~l-~~~p~si~ 82 (517)
..+|++. .++.++-|.|... ++.++|+.+..+.+|++|.+++|++.+..-.++.+|.|+.+.+.+|+.- .-+|..|.
T Consensus 22 ~~FP~~v~qMt~~~WLkLnrt-~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF 100 (1255)
T KOG0444|consen 22 DRFPHDVEQMTQMTWLKLNRT-KLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIF 100 (1255)
T ss_pred CcCchhHHHhhheeEEEechh-hhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhc
Confidence 4566665 7888888888888 8888888888888888888888885555456888888888888887532 24788888
Q ss_pred CCCCCCEEeccCCcCccccCCCC-CCCCCcEEEEecCCCCCccCCC-CC---CCcEEEeecccCcccCCcCCCCCCccEE
Q 043008 83 NFNHLSMLCFRHCKNLRHFPNNL-HFVCPIIIDFSYCVNLTEFPQI-SG---NIIDLILTETAIEEVPSSTECLTNLQYL 157 (517)
Q Consensus 83 ~l~~L~~L~L~~~~~l~~lp~~~-~l~sL~~L~L~~c~~l~~~p~~-~~---~L~~L~L~~~~i~~lp~~i~~l~~L~~L 157 (517)
.+..|..|||++| .++..|..+ .-+++-.|+|++| .++.+|.. +- .|-.|+|++|+++.+|+.+..+.+|++|
T Consensus 101 ~l~dLt~lDLShN-qL~EvP~~LE~AKn~iVLNLS~N-~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL 178 (1255)
T KOG0444|consen 101 RLKDLTILDLSHN-QLREVPTNLEYAKNSIVLNLSYN-NIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTL 178 (1255)
T ss_pred ccccceeeecchh-hhhhcchhhhhhcCcEEEEcccC-ccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhh
Confidence 8888888888887 466778877 7788888888884 56777753 23 3467888888888888888888888888
Q ss_pred EcccCcCCccccccccCCCCCcEEEcCCC---CCcCCccCCCCCCCCEEEecCCCCCcchhhhhcCCCCCEEeccCC---
Q 043008 158 FLCSCKKLKRVSTSICKFKSLVWLSLNND---LTAIPQEIGCLSSLECLNLGGNNFEGLPASIKQISRLECLDLSYC--- 231 (517)
Q Consensus 158 ~l~~~~~l~~lp~~l~~l~~L~~L~Ls~~---l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~c--- 231 (517)
.+++|.+...--..+..+++|+.|.+++. +..+|.++..+.+|..+|++.|++..+|+++..+++|+.|+|++|
T Consensus 179 ~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~it 258 (1255)
T KOG0444|consen 179 KLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKIT 258 (1255)
T ss_pred hcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCcee
Confidence 88888654332223334556666666552 355666666666666666666666666666666666666666652
Q ss_pred -------------------CCCCcCCCCCCCccEEecccccCcCc-CCCCCchhhhcchhhHHhhhcCCCC
Q 043008 232 -------------------NSLQSLPELPLHLEVLLATNCKRLQS-LPEIPSCLEELDASVLEKLSKHSFG 282 (517)
Q Consensus 232 -------------------~~l~~lp~l~~~L~~L~~~~c~~l~~-l~~~~~~L~~L~~l~~~~Ls~n~~~ 282 (517)
|.++.+|.....|..|.-...++++. +..+|+.+..|..+.....++|.+.
T Consensus 259 eL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE 329 (1255)
T KOG0444|consen 259 ELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE 329 (1255)
T ss_pred eeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc
Confidence 33333443332222222222222222 3445666777777777777766654
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.79 E-value=7e-20 Score=186.01 Aligned_cols=219 Identities=21% Similarity=0.219 Sum_probs=146.4
Q ss_pred CCCCCCccEEeccCCCCCccc-cccCCCCCCccEEEccCCCCCCCCCCCCCCC-CccEEeeccccCCcccCccccCCCCC
Q 043008 10 NFKPKNLVELNLPYGHKVVQI-WEGKKRAFKLKFINLSHSQCHIKIPDPSETP-NLERIDILNCTNPACVLSSITNFNHL 87 (517)
Q Consensus 10 ~f~~~~L~~L~L~~n~~l~~l-~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~l~-~L~~L~L~~~~~l~~~p~si~~l~~L 87 (517)
.|-+..-+.|++++| ++..+ +..|.++++|+.++|..|. ++.+|.++... +|+.|+|.+|.+...-.+++..++.|
T Consensus 74 g~lp~~t~~LdlsnN-kl~~id~~~f~nl~nLq~v~l~~N~-Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~al 151 (873)
T KOG4194|consen 74 GFLPSQTQTLDLSNN-KLSHIDFEFFYNLPNLQEVNLNKNE-LTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPAL 151 (873)
T ss_pred CcCccceeeeecccc-ccccCcHHHHhcCCcceeeeeccch-hhhcccccccccceeEEeeeccccccccHHHHHhHhhh
Confidence 356778888999999 99887 6788999999999999997 88999876654 49999999987666666678888999
Q ss_pred CEEeccCCcCccccCCCC-CCCCCcEEEEecCCCCCccC---CCCCCCcEEEeecccCcccCCc-CCCCCCccEEEcccC
Q 043008 88 SMLCFRHCKNLRHFPNNL-HFVCPIIIDFSYCVNLTEFP---QISGNIIDLILTETAIEEVPSS-TECLTNLQYLFLCSC 162 (517)
Q Consensus 88 ~~L~L~~~~~l~~lp~~~-~l~sL~~L~L~~c~~l~~~p---~~~~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~l~~~ 162 (517)
+.|||+.|.+...--+.+ .-.++++|+|++|.....-. +.+.+|..|.|++|.|+.+|.- |.++++|+.|+|..|
T Consensus 152 rslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN 231 (873)
T KOG4194|consen 152 RSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRN 231 (873)
T ss_pred hhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhcccc
Confidence 999999986543322334 56788899998865433222 2234568888888888888765 445888888888887
Q ss_pred cCCccccccccCCCCCcEEEcC-CCCCcCCc-cCCCCCCCCEEEecCCCCCcch-hhhhcCCCCCEEeccC
Q 043008 163 KKLKRVSTSICKFKSLVWLSLN-NDLTAIPQ-EIGCLSSLECLNLGGNNFEGLP-ASIKQISRLECLDLSY 230 (517)
Q Consensus 163 ~~l~~lp~~l~~l~~L~~L~Ls-~~l~~lp~-~l~~l~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L~L~~ 230 (517)
.+.-.--..|.++++|+.|.+. +++..+-+ .|..+.++++|+|..|+++.+- .++.+|..|+.|+|++
T Consensus 232 ~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~ 302 (873)
T KOG4194|consen 232 RIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSY 302 (873)
T ss_pred ceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccch
Confidence 6544334456666666666663 33333322 2344444444444444444332 2344444444444443
No 8
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.78 E-value=1.5e-18 Score=189.72 Aligned_cols=247 Identities=24% Similarity=0.273 Sum_probs=189.5
Q ss_pred CCCCCCCCCCCCCccEEeccCCCCCccccccCCCCCCccEEEccCCCCCCCCCCCCCCCCccEEeeccccCCcccCcccc
Q 043008 3 PLRTLPSNFKPKNLVELNLPYGHKVVQIWEGKKRAFKLKFINLSHSQCHIKIPDPSETPNLERIDILNCTNPACVLSSIT 82 (517)
Q Consensus 3 pl~~lP~~f~~~~L~~L~L~~n~~l~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~~~~l~~~p~si~ 82 (517)
.++++|..+ +.+|+.|++.+| +++.+|.. .++|++|+|++|+ ++.+|.+ .++|+.|++.+|. +..+|..
T Consensus 212 ~LtsLP~~l-~~~L~~L~L~~N-~Lt~LP~l---p~~Lk~LdLs~N~-LtsLP~l--p~sL~~L~Ls~N~-L~~Lp~l-- 280 (788)
T PRK15387 212 GLTTLPDCL-PAHITTLVIPDN-NLTSLPAL---PPELRTLEVSGNQ-LTSLPVL--PPGLLELSIFSNP-LTHLPAL-- 280 (788)
T ss_pred CCCcCCcch-hcCCCEEEccCC-cCCCCCCC---CCCCcEEEecCCc-cCcccCc--ccccceeeccCCc-hhhhhhc--
Confidence 567888876 458999999999 89988753 5789999999987 5567753 4789999999884 4556543
Q ss_pred CCCCCCEEeccCCcCccccCCCCCCCCCcEEEEecCCCCCccCCCCCCCcEEEeecccCcccCCcCCCCCCccEEEcccC
Q 043008 83 NFNHLSMLCFRHCKNLRHFPNNLHFVCPIIIDFSYCVNLTEFPQISGNIIDLILTETAIEEVPSSTECLTNLQYLFLCSC 162 (517)
Q Consensus 83 ~l~~L~~L~L~~~~~l~~lp~~~~l~sL~~L~L~~c~~l~~~p~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~~ 162 (517)
..+|+.|++++|. +..+|. .+++|+.|++++| .+..+|....+|+.|++++|.+..+|.. ..+|+.|++++|
T Consensus 281 -p~~L~~L~Ls~N~-Lt~LP~--~p~~L~~LdLS~N-~L~~Lp~lp~~L~~L~Ls~N~L~~LP~l---p~~Lq~LdLS~N 352 (788)
T PRK15387 281 -PSGLCKLWIFGNQ-LTSLPV--LPPGLQELSVSDN-QLASLPALPSELCKLWAYNNQLTSLPTL---PSGLQELSVSDN 352 (788)
T ss_pred -hhhcCEEECcCCc-cccccc--cccccceeECCCC-ccccCCCCcccccccccccCcccccccc---ccccceEecCCC
Confidence 3568889999985 446665 3578999999986 5667888778889999999999988852 358999999998
Q ss_pred cCCccccccccCCCCCcEEEcCCC-CCcCCccCCCCCCCCEEEecCCCCCcchhhhhcCCCCCEEeccCCCCCCcCCCCC
Q 043008 163 KKLKRVSTSICKFKSLVWLSLNND-LTAIPQEIGCLSSLECLNLGGNNFEGLPASIKQISRLECLDLSYCNSLQSLPELP 241 (517)
Q Consensus 163 ~~l~~lp~~l~~l~~L~~L~Ls~~-l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~l~ 241 (517)
++. .+|.. ..+|+.|++++| +..+|.. .++|+.|+|++|+|+.+|.. .++|+.|++++ +.++.+|.++
T Consensus 353 ~Ls-~LP~l---p~~L~~L~Ls~N~L~~LP~l---~~~L~~LdLs~N~Lt~LP~l---~s~L~~LdLS~-N~LssIP~l~ 421 (788)
T PRK15387 353 QLA-SLPTL---PSELYKLWAYNNRLTSLPAL---PSGLKELIVSGNRLTSLPVL---PSELKELMVSG-NRLTSLPMLP 421 (788)
T ss_pred ccC-CCCCC---CcccceehhhccccccCccc---ccccceEEecCCcccCCCCc---ccCCCEEEccC-CcCCCCCcch
Confidence 665 45543 356778888664 5667753 35799999999999998854 36899999997 5688899888
Q ss_pred CCccEEecccccCcCcCCCCCchhhhcchhhHHhhhcCCCCC
Q 043008 242 LHLEVLLATNCKRLQSLPEIPSCLEELDASVLEKLSKHSFGE 283 (517)
Q Consensus 242 ~~L~~L~~~~c~~l~~l~~~~~~L~~L~~l~~~~Ls~n~~~~ 283 (517)
.+|+.|++.++ .+ ..+|..+..+..+..++|++|++++
T Consensus 422 ~~L~~L~Ls~N-qL---t~LP~sl~~L~~L~~LdLs~N~Ls~ 459 (788)
T PRK15387 422 SGLLSLSVYRN-QL---TRLPESLIHLSSETTVNLEGNPLSE 459 (788)
T ss_pred hhhhhhhhccC-cc---cccChHHhhccCCCeEECCCCCCCc
Confidence 88888877663 23 3567778888888889999999875
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.77 E-value=1.3e-21 Score=190.76 Aligned_cols=274 Identities=21% Similarity=0.271 Sum_probs=157.3
Q ss_pred CCCccEEeccCCCCCccccccCCCCCCccEEEccCCCCCCCCC-CCCCCCCccEEeeccccCCcccCccccCCCCCCEEe
Q 043008 13 PKNLVELNLPYGHKVVQIWEGKKRAFKLKFINLSHSQCHIKIP-DPSETPNLERIDILNCTNPACVLSSITNFNHLSMLC 91 (517)
Q Consensus 13 ~~~L~~L~L~~n~~l~~l~~~~~~l~~L~~L~Ls~~~~l~~~p-~l~~l~~L~~L~L~~~~~l~~~p~si~~l~~L~~L~ 91 (517)
+.+|..|++.+| +++++|+..-.++.|+.||...|- ++.+| +++++.+|+.|+|..| .+..+| +|+++..|++|.
T Consensus 159 ~~~l~~l~~~~n-~l~~l~~~~i~m~~L~~ld~~~N~-L~tlP~~lg~l~~L~~LyL~~N-ki~~lP-ef~gcs~L~Elh 234 (565)
T KOG0472|consen 159 LSKLSKLDLEGN-KLKALPENHIAMKRLKHLDCNSNL-LETLPPELGGLESLELLYLRRN-KIRFLP-EFPGCSLLKELH 234 (565)
T ss_pred HHHHHHhhcccc-chhhCCHHHHHHHHHHhcccchhh-hhcCChhhcchhhhHHHHhhhc-ccccCC-CCCccHHHHHHH
Confidence 333333344443 333333333334444444444333 22222 3444444444444443 222333 344444444444
Q ss_pred ccCCcCccccCCCC--CCCCCcEEEEecCCCCCccCCCC---CCCcEEEeecccCcccCCcCCCCCCccEEEcccCcCCc
Q 043008 92 FRHCKNLRHFPNNL--HFVCPIIIDFSYCVNLTEFPQIS---GNIIDLILTETAIEEVPSSTECLTNLQYLFLCSCKKLK 166 (517)
Q Consensus 92 L~~~~~l~~lp~~~--~l~sL~~L~L~~c~~l~~~p~~~---~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~ 166 (517)
++.| .++.+|..+ ++.+|.+||+.+ +++++.|+.+ .+|..|++++|.|+.+|.+++++ +|+.|-+.||.+..
T Consensus 235 ~g~N-~i~~lpae~~~~L~~l~vLDLRd-Nklke~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlrT 311 (565)
T KOG0472|consen 235 VGEN-QIEMLPAEHLKHLNSLLVLDLRD-NKLKEVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLRT 311 (565)
T ss_pred hccc-HHHhhHHHHhcccccceeeeccc-cccccCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCchHH
Confidence 4433 233455555 677888888887 5677788754 34567888888888888888888 88888877775311
Q ss_pred c-------------------------------------ccc----cccCCCCCcEEEcCC--------------------
Q 043008 167 R-------------------------------------VST----SICKFKSLVWLSLNN-------------------- 185 (517)
Q Consensus 167 ~-------------------------------------lp~----~l~~l~~L~~L~Ls~-------------------- 185 (517)
. .|. ....+.+.+.|++++
T Consensus 312 iRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt 391 (565)
T KOG0472|consen 312 IRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVT 391 (565)
T ss_pred HHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceE
Confidence 0 000 012233444555443
Q ss_pred ------------------------------C-CCcCCccCCCCCCCCEEEecCCCCCcchhhhhcCCCCCEEeccCCCCC
Q 043008 186 ------------------------------D-LTAIPQEIGCLSSLECLNLGGNNFEGLPASIKQISRLECLDLSYCNSL 234 (517)
Q Consensus 186 ------------------------------~-l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~c~~l 234 (517)
| +.-+|..++.+++|..|+|++|-+..+|..++.+..|+.|+++. ++.
T Consensus 392 ~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~-NrF 470 (565)
T KOG0472|consen 392 SVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLNDLPEEMGSLVRLQTLNLSF-NRF 470 (565)
T ss_pred EEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhhhcchhhhhhhhhheecccc-ccc
Confidence 1 12334456778889999999998889999999999999999997 577
Q ss_pred CcCCCCCCCccEEecccccCcCcCCCCCchhhhcchhhHHhhhcCCCCCcceeeeeEEeeeCCCCc
Q 043008 235 QSLPELPLHLEVLLATNCKRLQSLPEIPSCLEELDASVLEKLSKHSFGEEYRIWSIKFNFTNCLKL 300 (517)
Q Consensus 235 ~~lp~l~~~L~~L~~~~c~~l~~l~~~~~~L~~L~~l~~~~Ls~n~~~~~~~l~~l~~~~~nC~kL 300 (517)
..+|+..-.++.++..-...++.-...++.+..+..+..+||.+|.+.. ++-.+.||.+|
T Consensus 471 r~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~------IPp~LgnmtnL 530 (565)
T KOG0472|consen 471 RMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQ------IPPILGNMTNL 530 (565)
T ss_pred ccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchhh------CChhhccccce
Confidence 7777655444444443333344444455567888888888888886542 23345666665
No 10
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.76 E-value=1.7e-19 Score=183.14 Aligned_cols=225 Identities=22% Similarity=0.188 Sum_probs=150.3
Q ss_pred CCCCccEEeccCCCCCccccccCCCCCCccEEEccCCCCCCCCC-CCCCCCCccEEeeccccCCcccCccccCCCCCCEE
Q 043008 12 KPKNLVELNLPYGHKVVQIWEGKKRAFKLKFINLSHSQCHIKIP-DPSETPNLERIDILNCTNPACVLSSITNFNHLSML 90 (517)
Q Consensus 12 ~~~~L~~L~L~~n~~l~~l~~~~~~l~~L~~L~Ls~~~~l~~~p-~l~~l~~L~~L~L~~~~~l~~~p~si~~l~~L~~L 90 (517)
++++|++++|.+| .+..+|.......+|+.|+|.+|.+..... .++-++.|+.|||+.|.+...--+++..-.++++|
T Consensus 100 nl~nLq~v~l~~N-~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L 178 (873)
T KOG4194|consen 100 NLPNLQEVNLNKN-ELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKL 178 (873)
T ss_pred cCCcceeeeeccc-hhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEE
Confidence 7888999999988 888888887777888888888887543333 37777888888888874433333455556778888
Q ss_pred eccCCcCccccCCCC-CCCCCcEEEEecCCCCCccCC-C---CCCCcEEEeecccCccc-CCcCCCCCCccEEEcccCcC
Q 043008 91 CFRHCKNLRHFPNNL-HFVCPIIIDFSYCVNLTEFPQ-I---SGNIIDLILTETAIEEV-PSSTECLTNLQYLFLCSCKK 164 (517)
Q Consensus 91 ~L~~~~~l~~lp~~~-~l~sL~~L~L~~c~~l~~~p~-~---~~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~l~~~~~ 164 (517)
+|++|++...-...| .+.+|.+|.|++| .+..+|. . +.+|+.|+|..|+|+.+ -..|..+++|+.|.+..|..
T Consensus 179 ~La~N~It~l~~~~F~~lnsL~tlkLsrN-rittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I 257 (873)
T KOG4194|consen 179 NLASNRITTLETGHFDSLNSLLTLKLSRN-RITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDI 257 (873)
T ss_pred eeccccccccccccccccchheeeecccC-cccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCc
Confidence 888887766555556 7778888888874 4555553 2 33457778888877765 34466777777777777766
Q ss_pred CccccccccCCCCCcEEEcCCC-CCcCC-ccCCCCCCCCEEEecCCCCCcc-hhhhhcCCCCCEEeccCCCCCCcCCC
Q 043008 165 LKRVSTSICKFKSLVWLSLNND-LTAIP-QEIGCLSSLECLNLGGNNFEGL-PASIKQISRLECLDLSYCNSLQSLPE 239 (517)
Q Consensus 165 l~~lp~~l~~l~~L~~L~Ls~~-l~~lp-~~l~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~L~~c~~l~~lp~ 239 (517)
..--...|..+.++++|+|..| +..+- .++.++++|+.|+|++|.|..+ ++...-+++|+.|+|++ |.++.+++
T Consensus 258 ~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~-N~i~~l~~ 334 (873)
T KOG4194|consen 258 SKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSS-NRITRLDE 334 (873)
T ss_pred ccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccc-cccccCCh
Confidence 5555555666777777777543 33332 3456666666666666666653 34555666666666665 55555553
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.75 E-value=3e-21 Score=188.23 Aligned_cols=259 Identities=21% Similarity=0.255 Sum_probs=218.3
Q ss_pred CCCCccEEeccCCCCCccccccCCCCCCccEEEccCCCCCCCCCCCCCCCCccEEeeccccCCcccCccccCCCCCCEEe
Q 043008 12 KPKNLVELNLPYGHKVVQIWEGKKRAFKLKFINLSHSQCHIKIPDPSETPNLERIDILNCTNPACVLSSITNFNHLSMLC 91 (517)
Q Consensus 12 ~~~~L~~L~L~~n~~l~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~~~~l~~~p~si~~l~~L~~L~ 91 (517)
.-..|..|.+++| .++.+-+.+.++..|.++++.+|+.....|+++.+..++.|+.+.| .+.++|..++.+..|..|+
T Consensus 43 ~qv~l~~lils~N-~l~~l~~dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n-~ls~lp~~i~s~~~l~~l~ 120 (565)
T KOG0472|consen 43 EQVDLQKLILSHN-DLEVLREDLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHN-KLSELPEQIGSLISLVKLD 120 (565)
T ss_pred hhcchhhhhhccC-chhhccHhhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccc-hHhhccHHHhhhhhhhhhh
Confidence 4567888999999 9999988899999999999999986665567999999999999997 6778999999999999999
Q ss_pred ccCCcCccccCCCC-CCCCCcEEEEecCCCCCccCCCCCCC---cEEEeecccCcccCCcCCCCCCccEEEcccCcCCcc
Q 043008 92 FRHCKNLRHFPNNL-HFVCPIIIDFSYCVNLTEFPQISGNI---IDLILTETAIEEVPSSTECLTNLQYLFLCSCKKLKR 167 (517)
Q Consensus 92 L~~~~~l~~lp~~~-~l~sL~~L~L~~c~~l~~~p~~~~~L---~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~ 167 (517)
.+.|. ...+|+.+ ++..|+.++..+ +.+.++|+.+.++ ..|++.+|.++++|+..-++++|++||...| .++.
T Consensus 121 ~s~n~-~~el~~~i~~~~~l~dl~~~~-N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N-~L~t 197 (565)
T KOG0472|consen 121 CSSNE-LKELPDSIGRLLDLEDLDATN-NQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSN-LLET 197 (565)
T ss_pred ccccc-eeecCchHHHHhhhhhhhccc-cccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchh-hhhc
Confidence 99975 45677777 899999999887 4567788776654 7889999999999988878999999999887 7889
Q ss_pred ccccccCCCCCcEEEcCCC-CCcCCccCCCCCCCCEEEecCCCCCcchhhhh-cCCCCCEEeccCCCCCCcCCCC---CC
Q 043008 168 VSTSICKFKSLVWLSLNND-LTAIPQEIGCLSSLECLNLGGNNFEGLPASIK-QISRLECLDLSYCNSLQSLPEL---PL 242 (517)
Q Consensus 168 lp~~l~~l~~L~~L~Ls~~-l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~-~l~~L~~L~L~~c~~l~~lp~l---~~ 242 (517)
+|..++.+.+|..|++..| +..+| .|.+++.|++|.++.|.|+.+|+... .+++|..|||.+ ++++++|+- ..
T Consensus 198 lP~~lg~l~~L~~LyL~~Nki~~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRd-Nklke~Pde~clLr 275 (565)
T KOG0472|consen 198 LPPELGGLESLELLYLRRNKIRFLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRD-NKLKEVPDEICLLR 275 (565)
T ss_pred CChhhcchhhhHHHHhhhcccccCC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccc-cccccCchHHHHhh
Confidence 9999999999999999655 56677 78999999999999999999998765 899999999998 789999974 46
Q ss_pred CccEEecccccCcCcCCCCCchhhhcchhhHHhhhcCCCC
Q 043008 243 HLEVLLATNCKRLQSLPEIPSCLEELDASVLEKLSKHSFG 282 (517)
Q Consensus 243 ~L~~L~~~~c~~l~~l~~~~~~L~~L~~l~~~~Ls~n~~~ 282 (517)
+|++|++++ ..++..|.++++| .+..+.+.+||+.
T Consensus 276 sL~rLDlSN----N~is~Lp~sLgnl-hL~~L~leGNPlr 310 (565)
T KOG0472|consen 276 SLERLDLSN----NDISSLPYSLGNL-HLKFLALEGNPLR 310 (565)
T ss_pred hhhhhcccC----CccccCCcccccc-eeeehhhcCCchH
Confidence 677777765 4567778888888 7888888899865
No 12
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.67 E-value=8.5e-16 Score=168.19 Aligned_cols=234 Identities=21% Similarity=0.239 Sum_probs=183.1
Q ss_pred CCccEEeccCCCCCccccccCCCCCCccEEEccCCCCCCCCCCCCCCCCccEEeeccccCCcccCccccCCCCCCEEecc
Q 043008 14 KNLVELNLPYGHKVVQIWEGKKRAFKLKFINLSHSQCHIKIPDPSETPNLERIDILNCTNPACVLSSITNFNHLSMLCFR 93 (517)
Q Consensus 14 ~~L~~L~L~~n~~l~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~~~~l~~~p~si~~l~~L~~L~L~ 93 (517)
.+-..|+++.+ .+..+|..+. ++|+.|++++|+ ++.+|.+ .++|++|+|++| .+..+|.. .++|+.|+++
T Consensus 201 ~~~~~LdLs~~-~LtsLP~~l~--~~L~~L~L~~N~-Lt~LP~l--p~~Lk~LdLs~N-~LtsLP~l---p~sL~~L~Ls 270 (788)
T PRK15387 201 NGNAVLNVGES-GLTTLPDCLP--AHITTLVIPDNN-LTSLPAL--PPELRTLEVSGN-QLTSLPVL---PPGLLELSIF 270 (788)
T ss_pred CCCcEEEcCCC-CCCcCCcchh--cCCCEEEccCCc-CCCCCCC--CCCCcEEEecCC-ccCcccCc---ccccceeecc
Confidence 34567999999 9999998775 489999999997 5667863 589999999998 45567653 4689999999
Q ss_pred CCcCccccCCCCCCCCCcEEEEecCCCCCccCCCCCCCcEEEeecccCcccCCcCCCCCCccEEEcccCcCCcccccccc
Q 043008 94 HCKNLRHFPNNLHFVCPIIIDFSYCVNLTEFPQISGNIIDLILTETAIEEVPSSTECLTNLQYLFLCSCKKLKRVSTSIC 173 (517)
Q Consensus 94 ~~~~l~~lp~~~~l~sL~~L~L~~c~~l~~~p~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~l~ 173 (517)
+|. +..+|. -..+|+.|++++| .++.+|....+|+.|++++|.++.+|... .+|+.|++++|.+. .+|..
T Consensus 271 ~N~-L~~Lp~--lp~~L~~L~Ls~N-~Lt~LP~~p~~L~~LdLS~N~L~~Lp~lp---~~L~~L~Ls~N~L~-~LP~l-- 340 (788)
T PRK15387 271 SNP-LTHLPA--LPSGLCKLWIFGN-QLTSLPVLPPGLQELSVSDNQLASLPALP---SELCKLWAYNNQLT-SLPTL-- 340 (788)
T ss_pred CCc-hhhhhh--chhhcCEEECcCC-ccccccccccccceeECCCCccccCCCCc---ccccccccccCccc-ccccc--
Confidence 986 455665 2367889999996 57788888889999999999999988633 46888999998664 45542
Q ss_pred CCCCCcEEEcCCC-CCcCCccCCCCCCCCEEEecCCCCCcchhhhhcCCCCCEEeccCCCCCCcCCCCCCCccEEecccc
Q 043008 174 KFKSLVWLSLNND-LTAIPQEIGCLSSLECLNLGGNNFEGLPASIKQISRLECLDLSYCNSLQSLPELPLHLEVLLATNC 252 (517)
Q Consensus 174 ~l~~L~~L~Ls~~-l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~l~~~L~~L~~~~c 252 (517)
..+|+.|++++| +..+|.. .++|+.|++++|.|..+|.. ..+|+.|+|++ +.++.+|..+++|+.|+++++
T Consensus 341 -p~~Lq~LdLS~N~Ls~LP~l---p~~L~~L~Ls~N~L~~LP~l---~~~L~~LdLs~-N~Lt~LP~l~s~L~~LdLS~N 412 (788)
T PRK15387 341 -PSGLQELSVSDNQLASLPTL---PSELYKLWAYNNRLTSLPAL---PSGLKELIVSG-NRLTSLPVLPSELKELMVSGN 412 (788)
T ss_pred -ccccceEecCCCccCCCCCC---CcccceehhhccccccCccc---ccccceEEecC-CcccCCCCcccCCCEEEccCC
Confidence 257999999775 5777753 46788999999999999864 35799999997 578889999999999999885
Q ss_pred cCcCcCCCCCchhhhcchhhHHhhhcCCCC
Q 043008 253 KRLQSLPEIPSCLEELDASVLEKLSKHSFG 282 (517)
Q Consensus 253 ~~l~~l~~~~~~L~~L~~l~~~~Ls~n~~~ 282 (517)
.+..++..+. .+..+++++|.++
T Consensus 413 -~LssIP~l~~------~L~~L~Ls~NqLt 435 (788)
T PRK15387 413 -RLTSLPMLPS------GLLSLSVYRNQLT 435 (788)
T ss_pred -cCCCCCcchh------hhhhhhhccCccc
Confidence 3555554433 3456788888876
No 13
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.66 E-value=2e-16 Score=173.96 Aligned_cols=215 Identities=18% Similarity=0.263 Sum_probs=113.2
Q ss_pred CccEEeccCCCCCccccccCCCCCCccEEEccCCCCCCCCCC-CCCCCCccEEeeccccCCcccCccccCCCCCCEEecc
Q 043008 15 NLVELNLPYGHKVVQIWEGKKRAFKLKFINLSHSQCHIKIPD-PSETPNLERIDILNCTNPACVLSSITNFNHLSMLCFR 93 (517)
Q Consensus 15 ~L~~L~L~~n~~l~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~~~~l~~~p~si~~l~~L~~L~L~ 93 (517)
+..+|+++++ ++..+|..+. ++|+.|+|++|. ++.+|. +. ++|+.|++++|. +..+|..+. .+|+.|+|+
T Consensus 179 ~~~~L~L~~~-~LtsLP~~Ip--~~L~~L~Ls~N~-LtsLP~~l~--~nL~~L~Ls~N~-LtsLP~~l~--~~L~~L~Ls 249 (754)
T PRK15370 179 NKTELRLKIL-GLTTIPACIP--EQITTLILDNNE-LKSLPENLQ--GNIKTLYANSNQ-LTSIPATLP--DTIQEMELS 249 (754)
T ss_pred CceEEEeCCC-CcCcCCcccc--cCCcEEEecCCC-CCcCChhhc--cCCCEEECCCCc-cccCChhhh--ccccEEECc
Confidence 4455666665 5665554432 356666666665 334442 22 356666666653 334554432 356666666
Q ss_pred CCcCccccCCCCCCCCCcEEEEecCCCCCccCCCC-CCCcEEEeecccCcccCCcCCCCCCccEEEcccCcCCccccccc
Q 043008 94 HCKNLRHFPNNLHFVCPIIIDFSYCVNLTEFPQIS-GNIIDLILTETAIEEVPSSTECLTNLQYLFLCSCKKLKRVSTSI 172 (517)
Q Consensus 94 ~~~~l~~lp~~~~l~sL~~L~L~~c~~l~~~p~~~-~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~l 172 (517)
+|... .+|..+ ..+|+.|++++| .+..+|..+ .+|+.|++++|.++.+|..+. ++|+.|++++|.+. .+|..+
T Consensus 250 ~N~L~-~LP~~l-~s~L~~L~Ls~N-~L~~LP~~l~~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~N~Lt-~LP~~l 323 (754)
T PRK15370 250 INRIT-ELPERL-PSALQSLDLFHN-KISCLPENLPEELRYLSVYDNSIRTLPAHLP--SGITHLNVQSNSLT-ALPETL 323 (754)
T ss_pred CCccC-cCChhH-hCCCCEEECcCC-ccCccccccCCCCcEEECCCCccccCcccch--hhHHHHHhcCCccc-cCCccc
Confidence 65432 445433 235666666543 344555432 356666666666666554432 35666666665443 233322
Q ss_pred cCCCCCcEEEcCCC-CCcCCccCCCCCCCCEEEecCCCCCcchhhhhcCCCCCEEeccCCCCCCcCCC-CCCCccEEecc
Q 043008 173 CKFKSLVWLSLNND-LTAIPQEIGCLSSLECLNLGGNNFEGLPASIKQISRLECLDLSYCNSLQSLPE-LPLHLEVLLAT 250 (517)
Q Consensus 173 ~~l~~L~~L~Ls~~-l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~-l~~~L~~L~~~ 250 (517)
.++|+.|++++| +..+|..+. ++|+.|+|++|+|+.+|..+. ++|+.|+|++| .++.+|. ++.+|+.|++.
T Consensus 324 --~~sL~~L~Ls~N~Lt~LP~~l~--~sL~~L~Ls~N~L~~LP~~lp--~~L~~LdLs~N-~Lt~LP~~l~~sL~~LdLs 396 (754)
T PRK15370 324 --PPGLKTLEAGENALTSLPASLP--PELQVLDVSKNQITVLPETLP--PTITTLDVSRN-ALTNLPENLPAALQIMQAS 396 (754)
T ss_pred --cccceeccccCCccccCChhhc--CcccEEECCCCCCCcCChhhc--CCcCEEECCCC-cCCCCCHhHHHHHHHHhhc
Confidence 245666666443 344554432 566666666666666665442 46666666653 4555553 33455556555
Q ss_pred c
Q 043008 251 N 251 (517)
Q Consensus 251 ~ 251 (517)
+
T Consensus 397 ~ 397 (754)
T PRK15370 397 R 397 (754)
T ss_pred c
Confidence 5
No 14
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.66 E-value=3.5e-16 Score=171.97 Aligned_cols=215 Identities=19% Similarity=0.272 Sum_probs=172.2
Q ss_pred CCCCCCCCCCCCCccEEeccCCCCCccccccCCCCCCccEEEccCCCCCCCCCC-CCCCCCccEEeeccccCCcccCccc
Q 043008 3 PLRTLPSNFKPKNLVELNLPYGHKVVQIWEGKKRAFKLKFINLSHSQCHIKIPD-PSETPNLERIDILNCTNPACVLSSI 81 (517)
Q Consensus 3 pl~~lP~~f~~~~L~~L~L~~n~~l~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~~~~l~~~p~si 81 (517)
-++++|... +++|+.|+|++| +++.+|..+. .+|++|+|++|. ++.+|. + .++|+.|+|++|. +..+|..+
T Consensus 189 ~LtsLP~~I-p~~L~~L~Ls~N-~LtsLP~~l~--~nL~~L~Ls~N~-LtsLP~~l--~~~L~~L~Ls~N~-L~~LP~~l 260 (754)
T PRK15370 189 GLTTIPACI-PEQITTLILDNN-ELKSLPENLQ--GNIKTLYANSNQ-LTSIPATL--PDTIQEMELSINR-ITELPERL 260 (754)
T ss_pred CcCcCCccc-ccCCcEEEecCC-CCCcCChhhc--cCCCEEECCCCc-cccCChhh--hccccEEECcCCc-cCcCChhH
Confidence 467788765 678999999999 9999987664 599999999998 567774 3 3589999999985 45788776
Q ss_pred cCCCCCCEEeccCCcCccccCCCCCCCCCcEEEEecCCCCCccCCCC-CCCcEEEeecccCcccCCcCCCCCCccEEEcc
Q 043008 82 TNFNHLSMLCFRHCKNLRHFPNNLHFVCPIIIDFSYCVNLTEFPQIS-GNIIDLILTETAIEEVPSSTECLTNLQYLFLC 160 (517)
Q Consensus 82 ~~l~~L~~L~L~~~~~l~~lp~~~~l~sL~~L~L~~c~~l~~~p~~~-~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~ 160 (517)
. .+|+.|++++|.. ..+|..+. ++|+.|++++| .++.+|..+ .+|+.|++++|.+..+|..+. ++|+.|+++
T Consensus 261 ~--s~L~~L~Ls~N~L-~~LP~~l~-~sL~~L~Ls~N-~Lt~LP~~lp~sL~~L~Ls~N~Lt~LP~~l~--~sL~~L~Ls 333 (754)
T PRK15370 261 P--SALQSLDLFHNKI-SCLPENLP-EELRYLSVYDN-SIRTLPAHLPSGITHLNVQSNSLTALPETLP--PGLKTLEAG 333 (754)
T ss_pred h--CCCCEEECcCCcc-CccccccC-CCCcEEECCCC-ccccCcccchhhHHHHHhcCCccccCCcccc--ccceecccc
Confidence 5 5899999998754 46787652 58999999996 566777644 468999999999999987654 789999999
Q ss_pred cCcCCccccccccCCCCCcEEEcCCC-CCcCCccCCCCCCCCEEEecCCCCCcchhhhhcCCCCCEEeccCCCCCCcCCC
Q 043008 161 SCKKLKRVSTSICKFKSLVWLSLNND-LTAIPQEIGCLSSLECLNLGGNNFEGLPASIKQISRLECLDLSYCNSLQSLPE 239 (517)
Q Consensus 161 ~~~~l~~lp~~l~~l~~L~~L~Ls~~-l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~ 239 (517)
+|.+. .+|..+. ++|+.|++++| +..+|..+ .++|+.|+|++|+++.+|..+. ..|+.|++++ +.+..+|+
T Consensus 334 ~N~Lt-~LP~~l~--~sL~~L~Ls~N~L~~LP~~l--p~~L~~LdLs~N~Lt~LP~~l~--~sL~~LdLs~-N~L~~LP~ 405 (754)
T PRK15370 334 ENALT-SLPASLP--PELQVLDVSKNQITVLPETL--PPTITTLDVSRNALTNLPENLP--AALQIMQASR-NNLVRLPE 405 (754)
T ss_pred CCccc-cCChhhc--CcccEEECCCCCCCcCChhh--cCCcCEEECCCCcCCCCCHhHH--HHHHHHhhcc-CCcccCch
Confidence 99655 4776654 79999999765 57777755 3789999999999999998765 3799999998 56778776
Q ss_pred C
Q 043008 240 L 240 (517)
Q Consensus 240 l 240 (517)
.
T Consensus 406 s 406 (754)
T PRK15370 406 S 406 (754)
T ss_pred h
Confidence 3
No 15
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.62 E-value=5.9e-18 Score=147.85 Aligned_cols=90 Identities=21% Similarity=0.272 Sum_probs=61.5
Q ss_pred CCCCCCCCCCCCccEEeccCCCCCccccccCCCCCCccEEEccCCCCCCCCC-CCCCCCCccEEeeccccCCcccCcccc
Q 043008 4 LRTLPSNFKPKNLVELNLPYGHKVVQIWEGKKRAFKLKFINLSHSQCHIKIP-DPSETPNLERIDILNCTNPACVLSSIT 82 (517)
Q Consensus 4 l~~lP~~f~~~~L~~L~L~~n~~l~~l~~~~~~l~~L~~L~Ls~~~~l~~~p-~l~~l~~L~~L~L~~~~~l~~~p~si~ 82 (517)
+..+|.-|++.+++.|.|++| ++..+|..+..+.+|+.|++++|+ +.++| .++.++.|+.|++.-| .+..+|..||
T Consensus 23 f~~~~gLf~~s~ITrLtLSHN-Kl~~vppnia~l~nlevln~~nnq-ie~lp~~issl~klr~lnvgmn-rl~~lprgfg 99 (264)
T KOG0617|consen 23 FEELPGLFNMSNITRLTLSHN-KLTVVPPNIAELKNLEVLNLSNNQ-IEELPTSISSLPKLRILNVGMN-RLNILPRGFG 99 (264)
T ss_pred HhhcccccchhhhhhhhcccC-ceeecCCcHHHhhhhhhhhcccch-hhhcChhhhhchhhhheecchh-hhhcCccccC
Confidence 345666677777777777777 777777777777777777777776 34444 4677777777777654 4556677777
Q ss_pred CCCCCCEEeccCCc
Q 043008 83 NFNHLSMLCFRHCK 96 (517)
Q Consensus 83 ~l~~L~~L~L~~~~ 96 (517)
.++.|+.|||.+|.
T Consensus 100 s~p~levldltynn 113 (264)
T KOG0617|consen 100 SFPALEVLDLTYNN 113 (264)
T ss_pred CCchhhhhhccccc
Confidence 77777777666653
No 16
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.61 E-value=1.9e-17 Score=176.62 Aligned_cols=268 Identities=23% Similarity=0.312 Sum_probs=194.3
Q ss_pred CCCCCCCCCCCCCCccEEeccCCCCCccccccCCCCCCccEEEccCCCCCCCCC-CCCCCCCccEEeeccccCCcccCcc
Q 043008 2 YPLRTLPSNFKPKNLVELNLPYGHKVVQIWEGKKRAFKLKFINLSHSQCHIKIP-DPSETPNLERIDILNCTNPACVLSS 80 (517)
Q Consensus 2 ~pl~~lP~~f~~~~L~~L~L~~n~~l~~l~~~~~~l~~L~~L~Ls~~~~l~~~p-~l~~l~~L~~L~L~~~~~l~~~p~s 80 (517)
.|+.++-..|.+.+|+++++++| ++..+|+++..+.+|+.+++.+|.+ ..+| .+....+|+.|.+..| .+..+|..
T Consensus 229 n~l~~~~~~p~p~nl~~~dis~n-~l~~lp~wi~~~~nle~l~~n~N~l-~~lp~ri~~~~~L~~l~~~~n-el~yip~~ 305 (1081)
T KOG0618|consen 229 NPLTTLDVHPVPLNLQYLDISHN-NLSNLPEWIGACANLEALNANHNRL-VALPLRISRITSLVSLSAAYN-ELEYIPPF 305 (1081)
T ss_pred Ccceeeccccccccceeeecchh-hhhcchHHHHhcccceEecccchhH-HhhHHHHhhhhhHHHHHhhhh-hhhhCCCc
Confidence 35555555677888999999998 8888888888899999999998884 6677 4778888898888887 56778888
Q ss_pred ccCCCCCCEEeccCCcCccccCCCC--C-CCCCcEEEEecCCCCCccCCC----CCCCcEEEeecccCc-ccCCcCCCCC
Q 043008 81 ITNFNHLSMLCFRHCKNLRHFPNNL--H-FVCPIIIDFSYCVNLTEFPQI----SGNIIDLILTETAIE-EVPSSTECLT 152 (517)
Q Consensus 81 i~~l~~L~~L~L~~~~~l~~lp~~~--~-l~sL~~L~L~~c~~l~~~p~~----~~~L~~L~L~~~~i~-~lp~~i~~l~ 152 (517)
.+.++.|++|+|..| .+..+|..+ - ..+|+.|+.+. ..+...|.. ...|+.|++.+|.++ ..-+-+.+..
T Consensus 306 le~~~sL~tLdL~~N-~L~~lp~~~l~v~~~~l~~ln~s~-n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~ 383 (1081)
T KOG0618|consen 306 LEGLKSLRTLDLQSN-NLPSLPDNFLAVLNASLNTLNVSS-NKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFK 383 (1081)
T ss_pred ccccceeeeeeehhc-cccccchHHHhhhhHHHHHHhhhh-ccccccccccchhhHHHHHHHHhcCcccccchhhhcccc
Confidence 888889999998886 455666644 2 22355666554 445555532 223577888888887 3333477788
Q ss_pred CccEEEcccCcCCccccccccCCCCCcEEEcCCC-CCcCCccCCCCCCCCEEEecCCCCCcchhhhhcCCCCCEEeccCC
Q 043008 153 NLQYLFLCSCKKLKRVSTSICKFKSLVWLSLNND-LTAIPQEIGCLSSLECLNLGGNNFEGLPASIKQISRLECLDLSYC 231 (517)
Q Consensus 153 ~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~Ls~~-l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~c 231 (517)
+|+.|+|++|.+.......+.++..|++|+|++| +..+|+.+..+..|++|...+|++..+| .+.+++.|+.+|++ |
T Consensus 384 hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fP-e~~~l~qL~~lDlS-~ 461 (1081)
T KOG0618|consen 384 HLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFP-ELAQLPQLKVLDLS-C 461 (1081)
T ss_pred ceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeech-hhhhcCcceEEecc-c
Confidence 8888898888544333345678888888888876 5888888888888888888888888888 88888999999998 5
Q ss_pred CCCCc--CCC-CC-CCccEEecccccCcCcCCCCCchhhhcchhhHHhhhcC
Q 043008 232 NSLQS--LPE-LP-LHLEVLLATNCKRLQSLPEIPSCLEELDASVLEKLSKH 279 (517)
Q Consensus 232 ~~l~~--lp~-l~-~~L~~L~~~~c~~l~~l~~~~~~L~~L~~l~~~~Ls~n 279 (517)
|.|+. +|+ .| +.|++|++.+...+. .....|..+..+.+.++.-+
T Consensus 462 N~L~~~~l~~~~p~p~LkyLdlSGN~~l~---~d~~~l~~l~~l~~~~i~~~ 510 (1081)
T KOG0618|consen 462 NNLSEVTLPEALPSPNLKYLDLSGNTRLV---FDHKTLKVLKSLSQMDITLN 510 (1081)
T ss_pred chhhhhhhhhhCCCcccceeeccCCcccc---cchhhhHHhhhhhheecccC
Confidence 66654 333 45 788888887765432 23344555555555555555
No 17
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.55 E-value=5.3e-17 Score=158.63 Aligned_cols=282 Identities=17% Similarity=0.139 Sum_probs=161.6
Q ss_pred CCCCCCCCCCCCCccEEeccCCCCCcccc-ccCCCCCCccEEEccCCCCCCCCCC-CCCCCCccEEeeccccCCcccCc-
Q 043008 3 PLRTLPSNFKPKNLVELNLPYGHKVVQIW-EGKKRAFKLKFINLSHSQCHIKIPD-PSETPNLERIDILNCTNPACVLS- 79 (517)
Q Consensus 3 pl~~lP~~f~~~~L~~L~L~~n~~l~~l~-~~~~~l~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~~~~l~~~p~- 79 (517)
-++++|.+. |+..++++|..| .|+.|| ..|+.+++||.||||+|.+...-|+ |.++++|..|-+.++..+..+|.
T Consensus 57 GL~eVP~~L-P~~tveirLdqN-~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~ 134 (498)
T KOG4237|consen 57 GLTEVPANL-PPETVEIRLDQN-QISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKG 134 (498)
T ss_pred CcccCcccC-CCcceEEEeccC-CcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhh
Confidence 367888887 788899999999 999995 5788999999999999987666664 99999999999988667777775
Q ss_pred cccCCCCCCEEeccCCcCccccCCCC-CCCCCcEEEEecCCCCCccCC-CC---CCCcEEEeecccCc---c--------
Q 043008 80 SITNFNHLSMLCFRHCKNLRHFPNNL-HFVCPIIIDFSYCVNLTEFPQ-IS---GNIIDLILTETAIE---E-------- 143 (517)
Q Consensus 80 si~~l~~L~~L~L~~~~~l~~lp~~~-~l~sL~~L~L~~c~~l~~~p~-~~---~~L~~L~L~~~~i~---~-------- 143 (517)
.|++|..|+.|.+.-|+..-.....+ ++++|..|.+.+ +.++.++. .+ ..++.+.+..|.+. .
T Consensus 135 ~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyD-n~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~ 213 (498)
T KOG4237|consen 135 AFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYD-NKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDL 213 (498)
T ss_pred HhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccc-hhhhhhccccccchhccchHhhhcCccccccccchhhhHH
Confidence 57788888888888776554444445 788888888777 34455543 22 23355555555421 1
Q ss_pred --cCCcCCCCCCccEEEcccCcCCccccccccCCCCCcEE----EcCCCC-CcCCc-cCCCCCCCCEEEecCCCCCcc-h
Q 043008 144 --VPSSTECLTNLQYLFLCSCKKLKRVSTSICKFKSLVWL----SLNNDL-TAIPQ-EIGCLSSLECLNLGGNNFEGL-P 214 (517)
Q Consensus 144 --lp~~i~~l~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L----~Ls~~l-~~lp~-~l~~l~~L~~L~Ls~n~l~~l-p 214 (517)
.|..++......-..+.+.+....-+..+. .+++.+ ....+. ...|. .|..+++|++|+|++|+|+.+ +
T Consensus 214 a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~--c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~ 291 (498)
T KOG4237|consen 214 AMNPIETSGARCVSPYRLYYKRINQEDARKFL--CSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIED 291 (498)
T ss_pred hhchhhcccceecchHHHHHHHhcccchhhhh--hhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhh
Confidence 111111111111111111110000000000 000000 000001 11121 245556666666666666654 3
Q ss_pred hhhhcCCCCCEEeccCCCCCCcCCC-CCCCccEEecccccCcCcCCCCCchhhhcchhhHHhhhcCCCCCcceeeee
Q 043008 215 ASIKQISRLECLDLSYCNSLQSLPE-LPLHLEVLLATNCKRLQSLPEIPSCLEELDASVLEKLSKHSFGEEYRIWSI 290 (517)
Q Consensus 215 ~~l~~l~~L~~L~L~~c~~l~~lp~-l~~~L~~L~~~~c~~l~~l~~~~~~L~~L~~l~~~~Ls~n~~~~~~~l~~l 290 (517)
.++..+..++.|.|.. |++..+.+ .+..|..|...++..++.....|..++.+..+..++|-.|||.+.|++.++
T Consensus 292 ~aFe~~a~l~eL~L~~-N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl 367 (498)
T KOG4237|consen 292 GAFEGAAELQELYLTR-NKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWL 367 (498)
T ss_pred hhhcchhhhhhhhcCc-chHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHH
Confidence 4555666666666665 34444332 222222222223333444444556667777777778888999999977654
No 18
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.47 E-value=1.1e-15 Score=133.64 Aligned_cols=159 Identities=23% Similarity=0.338 Sum_probs=103.6
Q ss_pred CCCCCccEEEccCCCCCCCCCCCCCCCCccEEeeccccCCcccCccccCCCCCCEEeccCCcCccccCCCCCCCCCcEEE
Q 043008 35 KRAFKLKFINLSHSQCHIKIPDPSETPNLERIDILNCTNPACVLSSITNFNHLSMLCFRHCKNLRHFPNNLHFVCPIIID 114 (517)
Q Consensus 35 ~~l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~~~~l~~~p~si~~l~~L~~L~L~~~~~l~~lp~~~~l~sL~~L~ 114 (517)
.++.+++.|.||+|++....|++..+.+|+.|++.+| .+.++|.++..+++|+.|++.-|
T Consensus 30 f~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nn-qie~lp~~issl~klr~lnvgmn------------------- 89 (264)
T KOG0617|consen 30 FNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNN-QIEELPTSISSLPKLRILNVGMN------------------- 89 (264)
T ss_pred cchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccc-hhhhcChhhhhchhhhheecchh-------------------
Confidence 3455555566666654444445555666666666554 34555555555555555555443
Q ss_pred EecCCCCCccCCCCCCCcEEEeecccCcccCCcCCCCCCccEEEcccCcCC-ccccccccCCCCCcEEEcCCC-CCcCCc
Q 043008 115 FSYCVNLTEFPQISGNIIDLILTETAIEEVPSSTECLTNLQYLFLCSCKKL-KRVSTSICKFKSLVWLSLNND-LTAIPQ 192 (517)
Q Consensus 115 L~~c~~l~~~p~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~~~~l-~~lp~~l~~l~~L~~L~Ls~~-l~~lp~ 192 (517)
++..+|..|+.++.|+.||+.+|.+. ..+|..|..+..|+-|.+++| .+-+|.
T Consensus 90 -------------------------rl~~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~ 144 (264)
T KOG0617|consen 90 -------------------------RLNILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPP 144 (264)
T ss_pred -------------------------hhhcCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCCh
Confidence 23344555555555666666555443 345666666666666666543 467788
Q ss_pred cCCCCCCCCEEEecCCCCCcchhhhhcCCCCCEEeccCCCCCCcCCC
Q 043008 193 EIGCLSSLECLNLGGNNFEGLPASIKQISRLECLDLSYCNSLQSLPE 239 (517)
Q Consensus 193 ~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~ 239 (517)
.++++++|+.|.+..|++-++|..++.+..|+.|++.+ ++++.+|.
T Consensus 145 dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqg-nrl~vlpp 190 (264)
T KOG0617|consen 145 DVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQG-NRLTVLPP 190 (264)
T ss_pred hhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhccc-ceeeecCh
Confidence 89999999999999999999999999999999999997 66766553
No 19
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.45 E-value=3.5e-15 Score=159.54 Aligned_cols=218 Identities=22% Similarity=0.232 Sum_probs=126.9
Q ss_pred CccEEeccCCCCCccccccCCCCCCccEEEccCCCCCCCCC-CCCCCCCccEEeeccccCCcccCccccCCCCCCEEecc
Q 043008 15 NLVELNLPYGHKVVQIWEGKKRAFKLKFINLSHSQCHIKIP-DPSETPNLERIDILNCTNPACVLSSITNFNHLSMLCFR 93 (517)
Q Consensus 15 ~L~~L~L~~n~~l~~l~~~~~~l~~L~~L~Ls~~~~l~~~p-~l~~l~~L~~L~L~~~~~l~~~p~si~~l~~L~~L~L~ 93 (517)
+|+.|+|++| .+...|..+..+.+|+.|+++.|. +...| ..+.+.+|++|+|.+| .+..+|.++..+++|++|+++
T Consensus 46 ~L~~l~lsnn-~~~~fp~~it~l~~L~~ln~s~n~-i~~vp~s~~~~~~l~~lnL~~n-~l~~lP~~~~~lknl~~LdlS 122 (1081)
T KOG0618|consen 46 KLKSLDLSNN-QISSFPIQITLLSHLRQLNLSRNY-IRSVPSSCSNMRNLQYLNLKNN-RLQSLPASISELKNLQYLDLS 122 (1081)
T ss_pred eeEEeecccc-ccccCCchhhhHHHHhhcccchhh-HhhCchhhhhhhcchhheeccc-hhhcCchhHHhhhcccccccc
Confidence 3777777777 677777777777777777777765 44555 3666777777777754 566677777777777777777
Q ss_pred CCcCccccCCCC-CCCCCcEEEEecC-------------------CCCCccCCCCCCCcE-EEeecccCcccCCcCCCC-
Q 043008 94 HCKNLRHFPNNL-HFVCPIIIDFSYC-------------------VNLTEFPQISGNIID-LILTETAIEEVPSSTECL- 151 (517)
Q Consensus 94 ~~~~l~~lp~~~-~l~sL~~L~L~~c-------------------~~l~~~p~~~~~L~~-L~L~~~~i~~lp~~i~~l- 151 (517)
.|.. ..+|..+ .+..++.+..++| .....++..+.+|+. |+|.+|.+..+. +..+
T Consensus 123 ~N~f-~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~~ldLr~N~~~~~d--ls~~~ 199 (1081)
T KOG0618|consen 123 FNHF-GPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTHQLDLRYNEMEVLD--LSNLA 199 (1081)
T ss_pred hhcc-CCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhheeeecccchhhhhh--hhhcc
Confidence 7643 3344433 4444444444443 223334444445544 777777766221 1122
Q ss_pred -------------------CCccEEEcccCcCCccccccccCCCCCcEEEcCC-CCCcCCccCCCCCCCCEEEecCCCCC
Q 043008 152 -------------------TNLQYLFLCSCKKLKRVSTSICKFKSLVWLSLNN-DLTAIPQEIGCLSSLECLNLGGNNFE 211 (517)
Q Consensus 152 -------------------~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~Ls~-~l~~lp~~l~~l~~L~~L~Ls~n~l~ 211 (517)
++|+.|+.+.|.+....+ -..-.+|+.++++. ++..+|++++.+.+|+.+++.+|.++
T Consensus 200 ~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~--~p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~ 277 (1081)
T KOG0618|consen 200 NLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDV--HPVPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLV 277 (1081)
T ss_pred chhhhhhhhcccceEEecCcchheeeeccCcceeecc--ccccccceeeecchhhhhcchHHHHhcccceEecccchhHH
Confidence 234444444443331111 11234566677755 34777777777788888887777777
Q ss_pred cchhhhhcCCCCCEEeccCCCCCCcCCCCC
Q 043008 212 GLPASIKQISRLECLDLSYCNSLQSLPELP 241 (517)
Q Consensus 212 ~lp~~l~~l~~L~~L~L~~c~~l~~lp~l~ 241 (517)
.+|..+....+|+.|.+.+ +.+..+|..+
T Consensus 278 ~lp~ri~~~~~L~~l~~~~-nel~yip~~l 306 (1081)
T KOG0618|consen 278 ALPLRISRITSLVSLSAAY-NELEYIPPFL 306 (1081)
T ss_pred hhHHHHhhhhhHHHHHhhh-hhhhhCCCcc
Confidence 7776666666666666654 4455555443
No 20
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.41 E-value=3.2e-15 Score=146.27 Aligned_cols=227 Identities=18% Similarity=0.155 Sum_probs=166.4
Q ss_pred CCCCCCCC-C-CCCCccEEeccCCCCCccc-cccCCCCCCccEEEccCCCCCCCCCC--CCCCCCccEEeeccccCCccc
Q 043008 3 PLRTLPSN-F-KPKNLVELNLPYGHKVVQI-WEGKKRAFKLKFINLSHSQCHIKIPD--PSETPNLERIDILNCTNPACV 77 (517)
Q Consensus 3 pl~~lP~~-f-~~~~L~~L~L~~n~~l~~l-~~~~~~l~~L~~L~Ls~~~~l~~~p~--l~~l~~L~~L~L~~~~~l~~~ 77 (517)
-+++||+. | .+++|++|||++| .|..| |+.|+.++.|..|-+.+++.++.+|. |.++..|+.|.+.-|......
T Consensus 78 ~I~~iP~~aF~~l~~LRrLdLS~N-~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir 156 (498)
T KOG4237|consen 78 QISSIPPGAFKTLHRLRRLDLSKN-NISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIR 156 (498)
T ss_pred CcccCChhhccchhhhceeccccc-chhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchh
Confidence 46889976 7 8999999999999 99999 89999999999998888666889993 999999999999988776677
Q ss_pred CccccCCCCCCEEeccCCcCccccCC-CC-CCCCCcEEEEecCCCCC------------ccCCCCCCC---cEEEeeccc
Q 043008 78 LSSITNFNHLSMLCFRHCKNLRHFPN-NL-HFVCPIIIDFSYCVNLT------------EFPQISGNI---IDLILTETA 140 (517)
Q Consensus 78 p~si~~l~~L~~L~L~~~~~l~~lp~-~~-~l~sL~~L~L~~c~~l~------------~~p~~~~~L---~~L~L~~~~ 140 (517)
...+..+++|..|.+.+|... .++. .+ .+.+++.+.+..+.... ..|-..+.. .-..+.+.+
T Consensus 157 ~~al~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~R 235 (498)
T KOG4237|consen 157 QDALRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKR 235 (498)
T ss_pred HHHHHHhhhcchhcccchhhh-hhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHH
Confidence 778999999999999998654 4554 56 89999998887765221 111111110 001111111
Q ss_pred Cc--------------------------ccCC-cCCCCCCccEEEcccCcCCccccccccCCCCCcEEEcCCC-CCcCCc
Q 043008 141 IE--------------------------EVPS-STECLTNLQYLFLCSCKKLKRVSTSICKFKSLVWLSLNND-LTAIPQ 192 (517)
Q Consensus 141 i~--------------------------~lp~-~i~~l~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~Ls~~-l~~lp~ 192 (517)
+. ..|. .|..+++|+.|++++|++...-+.+|.++..+++|.|..| ++.+..
T Consensus 236 i~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~ 315 (498)
T KOG4237|consen 236 INQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSS 315 (498)
T ss_pred hcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHH
Confidence 11 1111 1567888888888888888877888888888888888654 344433
Q ss_pred -cCCCCCCCCEEEecCCCCCc-chhhhhcCCCCCEEeccCC
Q 043008 193 -EIGCLSSLECLNLGGNNFEG-LPASIKQISRLECLDLSYC 231 (517)
Q Consensus 193 -~l~~l~~L~~L~Ls~n~l~~-lp~~l~~l~~L~~L~L~~c 231 (517)
.|.+++.|++|+|.+|+|+. -|..+..+.+|.+|+|-.|
T Consensus 316 ~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~N 356 (498)
T KOG4237|consen 316 GMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSN 356 (498)
T ss_pred HhhhccccceeeeecCCeeEEEecccccccceeeeeehccC
Confidence 36778888888888888886 4667778888888877654
No 21
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.36 E-value=4.7e-14 Score=142.11 Aligned_cols=104 Identities=26% Similarity=0.281 Sum_probs=50.4
Q ss_pred CCCcEEEeecccCc-----ccCCcCCCCCCccEEEcccCcCCc----cccccccCCCCCcEEEcCCCC------CcCCcc
Q 043008 129 GNIIDLILTETAIE-----EVPSSTECLTNLQYLFLCSCKKLK----RVSTSICKFKSLVWLSLNNDL------TAIPQE 193 (517)
Q Consensus 129 ~~L~~L~L~~~~i~-----~lp~~i~~l~~L~~L~l~~~~~l~----~lp~~l~~l~~L~~L~Ls~~l------~~lp~~ 193 (517)
.+|+.|++++|.++ .++..+..+++|+.|++++|.+.+ .++..+..+++|+.|+++++- ..++..
T Consensus 137 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~ 216 (319)
T cd00116 137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAET 216 (319)
T ss_pred CCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHH
Confidence 34455555555544 233334445566666666655442 122333444566666665432 123334
Q ss_pred CCCCCCCCEEEecCCCCCc--chhhhh----cCCCCCEEeccCCC
Q 043008 194 IGCLSSLECLNLGGNNFEG--LPASIK----QISRLECLDLSYCN 232 (517)
Q Consensus 194 l~~l~~L~~L~Ls~n~l~~--lp~~l~----~l~~L~~L~L~~c~ 232 (517)
+..+++|++|++++|.++. +..... ..+.|+.|++++|.
T Consensus 217 ~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~ 261 (319)
T cd00116 217 LASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCND 261 (319)
T ss_pred hcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCC
Confidence 4555666666666666553 111111 13566666666543
No 22
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.33 E-value=1.6e-13 Score=138.22 Aligned_cols=220 Identities=16% Similarity=0.109 Sum_probs=160.3
Q ss_pred CCCCccEEeccCCCCCc-----cccccCCCCCCccEEEccCCCCCC------CCC-CCCCCCCccEEeeccccCCcccCc
Q 043008 12 KPKNLVELNLPYGHKVV-----QIWEGKKRAFKLKFINLSHSQCHI------KIP-DPSETPNLERIDILNCTNPACVLS 79 (517)
Q Consensus 12 ~~~~L~~L~L~~n~~l~-----~l~~~~~~l~~L~~L~Ls~~~~l~------~~p-~l~~l~~L~~L~L~~~~~l~~~p~ 79 (517)
.+.+|++|+++++ .+. .++..+...++|+.++++++.... .++ .+..+++|++|++++|......+.
T Consensus 21 ~l~~L~~l~l~~~-~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 99 (319)
T cd00116 21 KLLCLQVLRLEGN-TLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCG 99 (319)
T ss_pred HHhhccEEeecCC-CCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHH
Confidence 4567999999999 773 456677888999999999987542 111 256788999999999977655555
Q ss_pred cccCCCC---CCEEeccCCcCcc----ccCCCC-CC-CCCcEEEEecCCCCC----ccCCC---CCCCcEEEeecccCc-
Q 043008 80 SITNFNH---LSMLCFRHCKNLR----HFPNNL-HF-VCPIIIDFSYCVNLT----EFPQI---SGNIIDLILTETAIE- 142 (517)
Q Consensus 80 si~~l~~---L~~L~L~~~~~l~----~lp~~~-~l-~sL~~L~L~~c~~l~----~~p~~---~~~L~~L~L~~~~i~- 142 (517)
.+..+.+ |++|++++|.... .+...+ .+ ++|+.|++++|.... .++.. ..+++.|++++|.+.
T Consensus 100 ~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 179 (319)
T cd00116 100 VLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGD 179 (319)
T ss_pred HHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCch
Confidence 5555555 9999999997652 222223 55 899999999987552 22222 346899999999887
Q ss_pred ----ccCCcCCCCCCccEEEcccCcCCcc----ccccccCCCCCcEEEcCCCC-Cc-----CCccC-CCCCCCCEEEecC
Q 043008 143 ----EVPSSTECLTNLQYLFLCSCKKLKR----VSTSICKFKSLVWLSLNNDL-TA-----IPQEI-GCLSSLECLNLGG 207 (517)
Q Consensus 143 ----~lp~~i~~l~~L~~L~l~~~~~l~~----lp~~l~~l~~L~~L~Ls~~l-~~-----lp~~l-~~l~~L~~L~Ls~ 207 (517)
.++..+..+++|+.|++++|.+... ++..+..+++|+.|+++++- .. +...+ ...+.|+.|++++
T Consensus 180 ~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~ 259 (319)
T cd00116 180 AGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSC 259 (319)
T ss_pred HHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccC
Confidence 3445566678999999999976533 44556788999999998853 21 11111 1358999999999
Q ss_pred CCCC-----cchhhhhcCCCCCEEeccCCC
Q 043008 208 NNFE-----GLPASIKQISRLECLDLSYCN 232 (517)
Q Consensus 208 n~l~-----~lp~~l~~l~~L~~L~L~~c~ 232 (517)
|.++ .+...+..+++|+.+++++|+
T Consensus 260 n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~ 289 (319)
T cd00116 260 NDITDDGAKDLAEVLAEKESLLELDLRGNK 289 (319)
T ss_pred CCCCcHHHHHHHHHHhcCCCccEEECCCCC
Confidence 9996 355677788999999999854
No 23
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.05 E-value=9e-12 Score=127.45 Aligned_cols=193 Identities=23% Similarity=0.341 Sum_probs=118.2
Q ss_pred EEeccCCCCCccccccCC--CCCCccEEEccCCCCCCCCC-CCCCCCCccEEeeccccCCcccCccccCCCCCCEEeccC
Q 043008 18 ELNLPYGHKVVQIWEGKK--RAFKLKFINLSHSQCHIKIP-DPSETPNLERIDILNCTNPACVLSSITNFNHLSMLCFRH 94 (517)
Q Consensus 18 ~L~L~~n~~l~~l~~~~~--~l~~L~~L~Ls~~~~l~~~p-~l~~l~~L~~L~L~~~~~l~~~p~si~~l~~L~~L~L~~ 94 (517)
+|.|++. +++.+|.+-. .+.--...||+.|+ ..++| ++..+..|+.|.|+.| -+..+|..++++..|.+|||+.
T Consensus 54 ~l~Ls~r-rlk~fpr~a~~~~ltdt~~aDlsrNR-~~elp~~~~~f~~Le~liLy~n-~~r~ip~~i~~L~~lt~l~ls~ 130 (722)
T KOG0532|consen 54 RLLLSGR-RLKEFPRGAASYDLTDTVFADLSRNR-FSELPEEACAFVSLESLILYHN-CIRTIPEAICNLEALTFLDLSS 130 (722)
T ss_pred ccccccc-hhhcCCCccccccccchhhhhccccc-cccCchHHHHHHHHHHHHHHhc-cceecchhhhhhhHHHHhhhcc
Confidence 3555555 6666654332 33444556777776 44555 4666667777777765 4556777777777777777776
Q ss_pred CcCccccCCCCCCCCCcEEEEecCCCCCccCCCCCCCcEEEeecccCcccCCcCCCCCCccEEEcccCcCCccccccccC
Q 043008 95 CKNLRHFPNNLHFVCPIIIDFSYCVNLTEFPQISGNIIDLILTETAIEEVPSSTECLTNLQYLFLCSCKKLKRVSTSICK 174 (517)
Q Consensus 95 ~~~l~~lp~~~~l~sL~~L~L~~c~~l~~~p~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~l~~ 174 (517)
|. +..+|..+-.--| +.|.+++|+++.+|..++.+..|..|+.+.| .+..+|..++.
T Consensus 131 Nq-lS~lp~~lC~lpL---------------------kvli~sNNkl~~lp~~ig~~~tl~~ld~s~n-ei~slpsql~~ 187 (722)
T KOG0532|consen 131 NQ-LSHLPDGLCDLPL---------------------KVLIVSNNKLTSLPEEIGLLPTLAHLDVSKN-EIQSLPSQLGY 187 (722)
T ss_pred ch-hhcCChhhhcCcc---------------------eeEEEecCccccCCcccccchhHHHhhhhhh-hhhhchHHhhh
Confidence 53 3344444422234 4444555555556666665566666666665 33445555666
Q ss_pred CCCCcEEEc-CCCCCcCCccCCCCCCCCEEEecCCCCCcchhhhhcCCCCCEEeccCCCCCCcCC
Q 043008 175 FKSLVWLSL-NNDLTAIPQEIGCLSSLECLNLGGNNFEGLPASIKQISRLECLDLSYCNSLQSLP 238 (517)
Q Consensus 175 l~~L~~L~L-s~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp 238 (517)
+.+|+.|.+ ++++..+|+.+..| .|..||++.|++..+|.+|..+..|++|-|.+ |-|++-|
T Consensus 188 l~slr~l~vrRn~l~~lp~El~~L-pLi~lDfScNkis~iPv~fr~m~~Lq~l~Len-NPLqSPP 250 (722)
T KOG0532|consen 188 LTSLRDLNVRRNHLEDLPEELCSL-PLIRLDFSCNKISYLPVDFRKMRHLQVLQLEN-NPLQSPP 250 (722)
T ss_pred HHHHHHHHHhhhhhhhCCHHHhCC-ceeeeecccCceeecchhhhhhhhheeeeecc-CCCCCCh
Confidence 666666666 33456666666633 46777777777777777777777777777774 6666655
No 24
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.99 E-value=4.7e-10 Score=116.75 Aligned_cols=191 Identities=26% Similarity=0.363 Sum_probs=130.2
Q ss_pred EEEccCCCCCCCCCCCCCCCCccEEeeccccCCcccCccccCCC-CCCEEeccCCcCccccCCCC-CCCCCcEEEEecCC
Q 043008 42 FINLSHSQCHIKIPDPSETPNLERIDILNCTNPACVLSSITNFN-HLSMLCFRHCKNLRHFPNNL-HFVCPIIIDFSYCV 119 (517)
Q Consensus 42 ~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~~~~l~~~p~si~~l~-~L~~L~L~~~~~l~~lp~~~-~l~sL~~L~L~~c~ 119 (517)
.+++..+........+..++.++.|++.+| .+..++...+.+. +|+.|++++|.. ..+|..+ .++.|+.|++++|.
T Consensus 97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n-~i~~i~~~~~~~~~nL~~L~l~~N~i-~~l~~~~~~l~~L~~L~l~~N~ 174 (394)
T COG4886 97 SLDLNLNRLRSNISELLELTNLTSLDLDNN-NITDIPPLIGLLKSNLKELDLSDNKI-ESLPSPLRNLPNLKNLDLSFND 174 (394)
T ss_pred eeeccccccccCchhhhcccceeEEecCCc-ccccCccccccchhhcccccccccch-hhhhhhhhccccccccccCCch
Confidence 466666654344444555677778887776 4556666667664 788888877643 4454445 77788888887754
Q ss_pred CCCccCC---CCCCCcEEEeecccCcccCCcCCCCCCccEEEcccCcCCccccccccCCCCCcEEEcCCCC-CcCCccCC
Q 043008 120 NLTEFPQ---ISGNIIDLILTETAIEEVPSSTECLTNLQYLFLCSCKKLKRVSTSICKFKSLVWLSLNNDL-TAIPQEIG 195 (517)
Q Consensus 120 ~l~~~p~---~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~Ls~~l-~~lp~~l~ 195 (517)
+..+|. ...+++.|++++|.+..+|..+.....|++|.+++|. ....+..+.++.++..+.+.++. ..++..++
T Consensus 175 -l~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~-~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~ 252 (394)
T COG4886 175 -LSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNS-IIELLSSLSNLKNLSGLELSNNKLEDLPESIG 252 (394)
T ss_pred -hhhhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCc-ceecchhhhhcccccccccCCceeeeccchhc
Confidence 445554 4566778888888888888777677778888888774 33344556677777777765543 44467777
Q ss_pred CCCCCCEEEecCCCCCcchhhhhcCCCCCEEeccCCCCCCcC
Q 043008 196 CLSSLECLNLGGNNFEGLPASIKQISRLECLDLSYCNSLQSL 237 (517)
Q Consensus 196 ~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~c~~l~~l 237 (517)
.+++|+.|++++|.++.++. +..+.+|+.|+++++.....+
T Consensus 253 ~l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n~~~~~~ 293 (394)
T COG4886 253 NLSNLETLDLSNNQISSISS-LGSLTNLRELDLSGNSLSNAL 293 (394)
T ss_pred cccccceecccccccccccc-ccccCccCEEeccCccccccc
Confidence 88888888888888888776 778888888888875444433
No 25
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.98 E-value=2.1e-10 Score=128.54 Aligned_cols=250 Identities=19% Similarity=0.251 Sum_probs=168.2
Q ss_pred CCCCCCCCCCccEEeccCCCCCccccccCCCCCCccEEEccCCCC-CCCCCC--CCCCCCccEEeeccccCCcccCcccc
Q 043008 6 TLPSNFKPKNLVELNLPYGHKVVQIWEGKKRAFKLKFINLSHSQC-HIKIPD--PSETPNLERIDILNCTNPACVLSSIT 82 (517)
Q Consensus 6 ~lP~~f~~~~L~~L~L~~n~~l~~l~~~~~~l~~L~~L~Ls~~~~-l~~~p~--l~~l~~L~~L~L~~~~~l~~~p~si~ 82 (517)
..|..-+....+.+.+-+| .+..++... ..++|++|-+..|.. +..++. |..++.|++|||++|..+.++|++|+
T Consensus 515 ~~~~~~~~~~~rr~s~~~~-~~~~~~~~~-~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~ 592 (889)
T KOG4658|consen 515 EIPQVKSWNSVRRMSLMNN-KIEHIAGSS-ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIG 592 (889)
T ss_pred ccccccchhheeEEEEecc-chhhccCCC-CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHh
Confidence 3555556677788888888 777775543 444788888888863 555554 78889999999998888889999999
Q ss_pred CCCCCCEEeccCCcCccccCCCC-CCCCCcEEEEecCCCCCccCCC---CCCCcEEEeecccCc---ccCCcCCCCCCcc
Q 043008 83 NFNHLSMLCFRHCKNLRHFPNNL-HFVCPIIIDFSYCVNLTEFPQI---SGNIIDLILTETAIE---EVPSSTECLTNLQ 155 (517)
Q Consensus 83 ~l~~L~~L~L~~~~~l~~lp~~~-~l~sL~~L~L~~c~~l~~~p~~---~~~L~~L~L~~~~i~---~lp~~i~~l~~L~ 155 (517)
.|-+|++|++++. ....+|..+ +++.|.+|++..+..+..+|.+ +.+|++|.+...+.. ..-..+.++.+|+
T Consensus 593 ~Li~LryL~L~~t-~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~ 671 (889)
T KOG4658|consen 593 ELVHLRYLDLSDT-GISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLE 671 (889)
T ss_pred hhhhhhcccccCC-CccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchh
Confidence 9999999999885 456888888 8889999999888877777655 345677777665522 1122345667777
Q ss_pred EEEcccCcCCccccccccCCCCCc----EEEcCC-CCCcCCccCCCCCCCCEEEecCCCCCcchh-h-----hhc-CCCC
Q 043008 156 YLFLCSCKKLKRVSTSICKFKSLV----WLSLNN-DLTAIPQEIGCLSSLECLNLGGNNFEGLPA-S-----IKQ-ISRL 223 (517)
Q Consensus 156 ~L~l~~~~~l~~lp~~l~~l~~L~----~L~Ls~-~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~-~-----l~~-l~~L 223 (517)
.+....... .+-..+..+..|. .+.+.+ .....+..+..+.+|+.|.+.++.+.+... + ... ++++
T Consensus 672 ~ls~~~~s~--~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l 749 (889)
T KOG4658|consen 672 NLSITISSV--LLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNL 749 (889)
T ss_pred hheeecchh--HhHhhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHH
Confidence 776654322 1111122333333 222211 234556678889999999999998764321 1 111 4456
Q ss_pred CEEeccCCCCCCcCC--CCCCCccEEecccccCcCcCCC
Q 043008 224 ECLDLSYCNSLQSLP--ELPLHLEVLLATNCKRLQSLPE 260 (517)
Q Consensus 224 ~~L~L~~c~~l~~lp--~l~~~L~~L~~~~c~~l~~l~~ 260 (517)
..+.+.+|..++.+- -.+++|+.|.+..|..++....
T Consensus 750 ~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i~ 788 (889)
T KOG4658|consen 750 SKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDIIP 788 (889)
T ss_pred HHHHhhccccccccchhhccCcccEEEEecccccccCCC
Confidence 666667777776654 3568999999999887776544
No 26
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.93 E-value=2.7e-10 Score=127.79 Aligned_cols=230 Identities=17% Similarity=0.151 Sum_probs=140.2
Q ss_pred CCCCCCCCCCccEEeccCCCC-Ccccc-ccCCCCCCccEEEccCCCCCCCCCC-CCCCCCccEEeeccccCCcccCcccc
Q 043008 6 TLPSNFKPKNLVELNLPYGHK-VVQIW-EGKKRAFKLKFINLSHSQCHIKIPD-PSETPNLERIDILNCTNPACVLSSIT 82 (517)
Q Consensus 6 ~lP~~f~~~~L~~L~L~~n~~-l~~l~-~~~~~l~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~~~~l~~~p~si~ 82 (517)
.++.....++|+.|-+..|.. +..++ +.|..++.|++|||++|..+.++|. ++.+-+||+|+|++. .+..+|.+++
T Consensus 537 ~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t-~I~~LP~~l~ 615 (889)
T KOG4658|consen 537 HIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDT-GISHLPSGLG 615 (889)
T ss_pred hccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCC-CccccchHHH
Confidence 455556667899999999832 66664 3478899999999999998999996 899999999999986 6779999999
Q ss_pred CCCCCCEEeccCCcCccccCCCC-CCCCCcEEEEecCCCC--CccCCCCCCC---cEEEeecccCcccCCcCCCCCCcc-
Q 043008 83 NFNHLSMLCFRHCKNLRHFPNNL-HFVCPIIIDFSYCVNL--TEFPQISGNI---IDLILTETAIEEVPSSTECLTNLQ- 155 (517)
Q Consensus 83 ~l~~L~~L~L~~~~~l~~lp~~~-~l~sL~~L~L~~c~~l--~~~p~~~~~L---~~L~L~~~~i~~lp~~i~~l~~L~- 155 (517)
+|.+|.+||+..+..+..+|... .+.+|++|.+..-... ...-..+.+| +.+....... .+-..+..+++|.
T Consensus 616 ~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~-~~~e~l~~~~~L~~ 694 (889)
T KOG4658|consen 616 NLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV-LLLEDLLGMTRLRS 694 (889)
T ss_pred HHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh-HhHhhhhhhHHHHH
Confidence 99999999999988888887666 6999999999874300 0011112223 3333322222 1111112222222
Q ss_pred ---EEEcccCcCCccccccccCCCCCcEEEcCCCCC-cC-CccC-----C-CCCCCCEEEecCCCCCcchhhhhcCCCCC
Q 043008 156 ---YLFLCSCKKLKRVSTSICKFKSLVWLSLNNDLT-AI-PQEI-----G-CLSSLECLNLGGNNFEGLPASIKQISRLE 224 (517)
Q Consensus 156 ---~L~l~~~~~l~~lp~~l~~l~~L~~L~Ls~~l~-~l-p~~l-----~-~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~ 224 (517)
.+.+.+ ......+..+..+.+|+.|.+.+.-. +. .... . .++++..+.+.++..-..+.+..-.++|+
T Consensus 695 ~~~~l~~~~-~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~ 773 (889)
T KOG4658|consen 695 LLQSLSIEG-CSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLT 773 (889)
T ss_pred HhHhhhhcc-cccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccchhhccCccc
Confidence 222222 12233444556666666666644211 11 0000 0 12233333333443334444555667777
Q ss_pred EEeccCCCCCCcCC
Q 043008 225 CLDLSYCNSLQSLP 238 (517)
Q Consensus 225 ~L~L~~c~~l~~lp 238 (517)
.|.+..|..++.+.
T Consensus 774 ~l~l~~~~~~e~~i 787 (889)
T KOG4658|consen 774 SLSLVSCRLLEDII 787 (889)
T ss_pred EEEEecccccccCC
Confidence 77777777766654
No 27
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.91 E-value=1.1e-09 Score=113.96 Aligned_cols=195 Identities=23% Similarity=0.282 Sum_probs=153.0
Q ss_pred EEeccCCCCCccccccCCCCCCccEEEccCCCCCCCCCC-CCCCC-CccEEeeccccCCcccCccccCCCCCCEEeccCC
Q 043008 18 ELNLPYGHKVVQIWEGKKRAFKLKFINLSHSQCHIKIPD-PSETP-NLERIDILNCTNPACVLSSITNFNHLSMLCFRHC 95 (517)
Q Consensus 18 ~L~L~~n~~l~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~-l~~l~-~L~~L~L~~~~~l~~~p~si~~l~~L~~L~L~~~ 95 (517)
.|++..+ .+..-...+..++.++.|++.++. ...+|. ...+. +|+.|++++| .+..+|..++.+++|+.|++++|
T Consensus 97 ~l~~~~~-~~~~~~~~~~~~~~l~~L~l~~n~-i~~i~~~~~~~~~nL~~L~l~~N-~i~~l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLN-RLRSNISELLELTNLTSLDLDNNN-ITDIPPLIGLLKSNLKELDLSDN-KIESLPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeecccc-ccccCchhhhcccceeEEecCCcc-cccCccccccchhhccccccccc-chhhhhhhhhccccccccccCCc
Confidence 4666666 554434555667889999999998 556665 45553 9999999997 56677778999999999999998
Q ss_pred cCccccCCCC-CCCCCcEEEEecCCCCCccCCC---CCCCcEEEeecccCcccCCcCCCCCCccEEEcccCcCCcccccc
Q 043008 96 KNLRHFPNNL-HFVCPIIIDFSYCVNLTEFPQI---SGNIIDLILTETAIEEVPSSTECLTNLQYLFLCSCKKLKRVSTS 171 (517)
Q Consensus 96 ~~l~~lp~~~-~l~sL~~L~L~~c~~l~~~p~~---~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~ 171 (517)
+. ..+|... .++.|+.|++++ +.+..+|.. ...|++|.+++|.+..++..+.++.++..|.+.+|+. ..++..
T Consensus 174 ~l-~~l~~~~~~~~~L~~L~ls~-N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~-~~~~~~ 250 (394)
T COG4886 174 DL-SDLPKLLSNLSNLNNLDLSG-NKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKL-EDLPES 250 (394)
T ss_pred hh-hhhhhhhhhhhhhhheeccC-CccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCcee-eeccch
Confidence 64 5666666 899999999999 567777764 3448999999998888888899999999999877744 344778
Q ss_pred ccCCCCCcEEEcCCCC-CcCCccCCCCCCCCEEEecCCCCCcchhhhhc
Q 043008 172 ICKFKSLVWLSLNNDL-TAIPQEIGCLSSLECLNLGGNNFEGLPASIKQ 219 (517)
Q Consensus 172 l~~l~~L~~L~Ls~~l-~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~ 219 (517)
+..+++++.|+++++. ..++. ++.+.+|+.|++++|.+...+.....
T Consensus 251 ~~~l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n~~~~~~~~~~~ 298 (394)
T COG4886 251 IGNLSNLETLDLSNNQISSISS-LGSLTNLRELDLSGNSLSNALPLIAL 298 (394)
T ss_pred hccccccceecccccccccccc-ccccCccCEEeccCccccccchhhhc
Confidence 8999999999998876 55555 99999999999999998876544333
No 28
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.79 E-value=1e-09 Score=109.48 Aligned_cols=194 Identities=19% Similarity=0.158 Sum_probs=101.9
Q ss_pred CCCCCccEEEccCCCCCCCCC---CCCCCCCccEEeeccccCCc--ccCccccCCCCCCEEeccCCcCccccCCCC--CC
Q 043008 35 KRAFKLKFINLSHSQCHIKIP---DPSETPNLERIDILNCTNPA--CVLSSITNFNHLSMLCFRHCKNLRHFPNNL--HF 107 (517)
Q Consensus 35 ~~l~~L~~L~Ls~~~~l~~~p---~l~~l~~L~~L~L~~~~~l~--~~p~si~~l~~L~~L~L~~~~~l~~lp~~~--~l 107 (517)
.++.+|+.+.|.++. ....+ ....+++++.|||+.|-... .+-.-...|++|+.|+|+.|+......... .+
T Consensus 118 sn~kkL~~IsLdn~~-V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l 196 (505)
T KOG3207|consen 118 SNLKKLREISLDNYR-VEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL 196 (505)
T ss_pred hhHHhhhheeecCcc-ccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence 356777777777765 22222 24567777777777762211 223344567777777777776554333333 56
Q ss_pred CCCcEEEEecCCCCCc----cCCCCCCCcEEEeeccc-CcccCCcCCCCCCccEEEcccCcCCccc-cccccCCCCCcEE
Q 043008 108 VCPIIIDFSYCVNLTE----FPQISGNIIDLILTETA-IEEVPSSTECLTNLQYLFLCSCKKLKRV-STSICKFKSLVWL 181 (517)
Q Consensus 108 ~sL~~L~L~~c~~l~~----~p~~~~~L~~L~L~~~~-i~~lp~~i~~l~~L~~L~l~~~~~l~~l-p~~l~~l~~L~~L 181 (517)
..|+.|.|+.|..... +-..+++++.|+|.+|. +..-..+...+..|+.|+|++|.+...- -...+.++.|+.|
T Consensus 197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~L 276 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQL 276 (505)
T ss_pred hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhh
Confidence 6777777777754321 12234455666666662 2222223344556666666666443221 1223445555555
Q ss_pred EcCCC-CC--cCCcc-----CCCCCCCCEEEecCCCCCcch--hhhhcCCCCCEEecc
Q 043008 182 SLNND-LT--AIPQE-----IGCLSSLECLNLGGNNFEGLP--ASIKQISRLECLDLS 229 (517)
Q Consensus 182 ~Ls~~-l~--~lp~~-----l~~l~~L~~L~Ls~n~l~~lp--~~l~~l~~L~~L~L~ 229 (517)
+++.+ +. .+|+. ...+++|+.|++..|++..++ ..+..+++|+.|.+.
T Consensus 277 nls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~ 334 (505)
T KOG3207|consen 277 NLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRIT 334 (505)
T ss_pred hccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcc
Confidence 55432 11 12222 334566666666666665544 234445555555544
No 29
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.73 E-value=3.3e-10 Score=116.21 Aligned_cols=154 Identities=21% Similarity=0.231 Sum_probs=104.8
Q ss_pred CCCccEEeccCCCCCccccccCCCCCCccEEEccCCCCCCCCCC-CCCCCCccEEeeccccCCcccCccccCCCCCCEEe
Q 043008 13 PKNLVELNLPYGHKVVQIWEGKKRAFKLKFINLSHSQCHIKIPD-PSETPNLERIDILNCTNPACVLSSITNFNHLSMLC 91 (517)
Q Consensus 13 ~~~L~~L~L~~n~~l~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~~~~l~~~p~si~~l~~L~~L~ 91 (517)
+..|..|.|..| .+..+|..+.++..|.+|||+.|+ +..+|. +..++ |+.|.+++| .++.+|..++.+.+|..||
T Consensus 97 f~~Le~liLy~n-~~r~ip~~i~~L~~lt~l~ls~Nq-lS~lp~~lC~lp-Lkvli~sNN-kl~~lp~~ig~~~tl~~ld 172 (722)
T KOG0532|consen 97 FVSLESLILYHN-CIRTIPEAICNLEALTFLDLSSNQ-LSHLPDGLCDLP-LKVLIVSNN-KLTSLPEEIGLLPTLAHLD 172 (722)
T ss_pred HHHHHHHHHHhc-cceecchhhhhhhHHHHhhhccch-hhcCChhhhcCc-ceeEEEecC-ccccCCcccccchhHHHhh
Confidence 334455555555 555666667777777777777777 455553 55554 777777765 5667777788777888888
Q ss_pred ccCCcCccccCCCC-CCCCCcEEEEecCCCCCccCCCCCCC--cEEEeecccCcccCCcCCCCCCccEEEcccCcCCccc
Q 043008 92 FRHCKNLRHFPNNL-HFVCPIIIDFSYCVNLTEFPQISGNI--IDLILTETAIEEVPSSTECLTNLQYLFLCSCKKLKRV 168 (517)
Q Consensus 92 L~~~~~l~~lp~~~-~l~sL~~L~L~~c~~l~~~p~~~~~L--~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~l 168 (517)
.+.|. +..+|..+ .+.+|+.|.+..| .+..+|+.+..| ..|+++.|+|..+|-.|.+|+.|++|.|.+|.+ ...
T Consensus 173 ~s~ne-i~slpsql~~l~slr~l~vrRn-~l~~lp~El~~LpLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNPL-qSP 249 (722)
T KOG0532|consen 173 VSKNE-IQSLPSQLGYLTSLRDLNVRRN-HLEDLPEELCSLPLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPL-QSP 249 (722)
T ss_pred hhhhh-hhhchHHhhhHHHHHHHHHhhh-hhhhCCHHHhCCceeeeecccCceeecchhhhhhhhheeeeeccCCC-CCC
Confidence 87764 34556656 7888888888774 455666655554 778888888888888888888888888877743 344
Q ss_pred ccccc
Q 043008 169 STSIC 173 (517)
Q Consensus 169 p~~l~ 173 (517)
|..++
T Consensus 250 PAqIC 254 (722)
T KOG0532|consen 250 PAQIC 254 (722)
T ss_pred hHHHH
Confidence 44443
No 30
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.69 E-value=2.6e-09 Score=101.82 Aligned_cols=121 Identities=24% Similarity=0.227 Sum_probs=73.4
Q ss_pred CCCCcEEEEecCCCCCccCC---CCCCCcEEEeecccCcccCCcCCCCCCccEEEcccCcCCccccccccCCCCCcEEEc
Q 043008 107 FVCPIIIDFSYCVNLTEFPQ---ISGNIIDLILTETAIEEVPSSTECLTNLQYLFLCSCKKLKRVSTSICKFKSLVWLSL 183 (517)
Q Consensus 107 l~sL~~L~L~~c~~l~~~p~---~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~L 183 (517)
.+.|+.+||++|. ++.+.+ .++.++.|+++.|.|..+.. +..+++|+.||+++|.+. .+..+-.++-+++.|.+
T Consensus 283 Wq~LtelDLS~N~-I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 283 WQELTELDLSGNL-ITQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKL 359 (490)
T ss_pred Hhhhhhccccccc-hhhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccchhH-hhhhhHhhhcCEeeeeh
Confidence 4566677777743 333332 24455777777777776654 666777777777776432 22233345666666777
Q ss_pred CCCCCcCCccCCCCCCCCEEEecCCCCCcch--hhhhcCCCCCEEeccC
Q 043008 184 NNDLTAIPQEIGCLSSLECLNLGGNNFEGLP--ASIKQISRLECLDLSY 230 (517)
Q Consensus 184 s~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp--~~l~~l~~L~~L~L~~ 230 (517)
++|..+-...+..+-+|..||+++|+|..+. ..|+++|.|+.+.|.+
T Consensus 360 a~N~iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~ 408 (490)
T KOG1259|consen 360 AQNKIETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTG 408 (490)
T ss_pred hhhhHhhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcC
Confidence 6665444445666667777777777766543 3566677777666665
No 31
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.68 E-value=7e-09 Score=98.89 Aligned_cols=130 Identities=21% Similarity=0.274 Sum_probs=94.8
Q ss_pred CCCcEEEeecccCcccCCcCCCCCCccEEEcccCcCCccccccccCCCCCcEEEcCCCC-CcCCccCCCCCCCCEEEecC
Q 043008 129 GNIIDLILTETAIEEVPSSTECLTNLQYLFLCSCKKLKRVSTSICKFKSLVWLSLNNDL-TAIPQEIGCLSSLECLNLGG 207 (517)
Q Consensus 129 ~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~Ls~~l-~~lp~~l~~l~~L~~L~Ls~ 207 (517)
..|++++|++|.|+++..++.-.+.++.|+++.|.+...- .+..+++|+.|++++|. ..+..+-..+-++++|.|++
T Consensus 284 q~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~--nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~ 361 (490)
T KOG1259|consen 284 QELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQ--NLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQ 361 (490)
T ss_pred hhhhhccccccchhhhhhhhhhccceeEEeccccceeeeh--hhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhh
Confidence 3468899999999999999888999999999998765442 26677888888888764 55555556677888888888
Q ss_pred CCCCcchhhhhcCCCCCEEeccCCCCCCcCCCCCCCccEEecccccCcCcCCCCCchhhhcchhhHHhhhcCCCCCc
Q 043008 208 NNFEGLPASIKQISRLECLDLSYCNSLQSLPELPLHLEVLLATNCKRLQSLPEIPSCLEELDASVLEKLSKHSFGEE 284 (517)
Q Consensus 208 n~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~l~~~L~~L~~~~c~~l~~l~~~~~~L~~L~~l~~~~Ls~n~~~~~ 284 (517)
|.|.++. .+..+.+|..||+++ |+++.+.+ -..+.+|+-+..+.|.+||+.+.
T Consensus 362 N~iE~LS-GL~KLYSLvnLDl~~-N~Ie~lde----------------------V~~IG~LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 362 NKIETLS-GLRKLYSLVNLDLSS-NQIEELDE----------------------VNHIGNLPCLETLRLTGNPLAGS 414 (490)
T ss_pred hhHhhhh-hhHhhhhheeccccc-cchhhHHH----------------------hcccccccHHHHHhhcCCCcccc
Confidence 8887775 667778888888887 44443221 12355666677778888887743
No 32
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.66 E-value=2.1e-09 Score=107.32 Aligned_cols=199 Identities=18% Similarity=0.197 Sum_probs=135.6
Q ss_pred CCCCccEEeccCCCCCcccc--ccCCCCCCccEEEccCCCCCCCCC--C-CCCCCCccEEeeccccCCcccCcc-ccCCC
Q 043008 12 KPKNLVELNLPYGHKVVQIW--EGKKRAFKLKFINLSHSQCHIKIP--D-PSETPNLERIDILNCTNPACVLSS-ITNFN 85 (517)
Q Consensus 12 ~~~~L~~L~L~~n~~l~~l~--~~~~~l~~L~~L~Ls~~~~l~~~p--~-l~~l~~L~~L~L~~~~~l~~~p~s-i~~l~ 85 (517)
++++|++..|.++ .+...+ +..+.+++++.||||+|-+..--| . ...+|+|+.|+|+.|....-..+. -..+.
T Consensus 119 n~kkL~~IsLdn~-~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 119 NLKKLREISLDNY-RVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hHHhhhheeecCc-cccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 5678888888888 776655 356788999999999885332222 1 367899999999988543322221 23577
Q ss_pred CCCEEeccCCcCccc-cCCCC-CCCCCcEEEEecCCCCC--ccC-CCCCCCcEEEeecccCcccC--CcCCCCCCccEEE
Q 043008 86 HLSMLCFRHCKNLRH-FPNNL-HFVCPIIIDFSYCVNLT--EFP-QISGNIIDLILTETAIEEVP--SSTECLTNLQYLF 158 (517)
Q Consensus 86 ~L~~L~L~~~~~l~~-lp~~~-~l~sL~~L~L~~c~~l~--~~p-~~~~~L~~L~L~~~~i~~lp--~~i~~l~~L~~L~ 158 (517)
.|+.|.|+.|..... +-... .+++|+.|+|.+|..+. ..+ +++..|+.|+|++|.+...+ .-.+.++.|+.|+
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Ln 277 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLN 277 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhh
Confidence 888999998865421 11111 67889999998875332 122 34566789999999888776 4567889999999
Q ss_pred cccCcCCcc-cccc-----ccCCCCCcEEEcCCC-CCcCCc--cCCCCCCCCEEEecCCCCC
Q 043008 159 LCSCKKLKR-VSTS-----ICKFKSLVWLSLNND-LTAIPQ--EIGCLSSLECLNLGGNNFE 211 (517)
Q Consensus 159 l~~~~~l~~-lp~~-----l~~l~~L~~L~Ls~~-l~~lp~--~l~~l~~L~~L~Ls~n~l~ 211 (517)
++.|..... .|+. ...+++|+.|+++.| +..++. .+..+++|+.|.+..|.+.
T Consensus 278 ls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 278 LSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred ccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence 988866432 3333 356889999999654 444443 3566778888888887765
No 33
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.64 E-value=1.6e-08 Score=91.92 Aligned_cols=88 Identities=25% Similarity=0.320 Sum_probs=27.6
Q ss_pred CCCCCCCCCCccEEeccCCCCCccccccCC-CCCCccEEEccCCCCCCCCCCCCCCCCccEEeeccccCCcccCccc-cC
Q 043008 6 TLPSNFKPKNLVELNLPYGHKVVQIWEGKK-RAFKLKFINLSHSQCHIKIPDPSETPNLERIDILNCTNPACVLSSI-TN 83 (517)
Q Consensus 6 ~lP~~f~~~~L~~L~L~~n~~l~~l~~~~~-~l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~~~~l~~~p~si-~~ 83 (517)
..|..-++.++++|+|.+| .|..+ +.+. .+.+|+.|||++|. ++.++++..+++|+.|++++|.+ ..+...+ ..
T Consensus 11 ~~~~~~n~~~~~~L~L~~n-~I~~I-e~L~~~l~~L~~L~Ls~N~-I~~l~~l~~L~~L~~L~L~~N~I-~~i~~~l~~~ 86 (175)
T PF14580_consen 11 QIAQYNNPVKLRELNLRGN-QISTI-ENLGATLDKLEVLDLSNNQ-ITKLEGLPGLPRLKTLDLSNNRI-SSISEGLDKN 86 (175)
T ss_dssp ---------------------------S--TT-TT--EEE-TTS---S--TT----TT--EEE--SS----S-CHHHHHH
T ss_pred ccccccccccccccccccc-ccccc-cchhhhhcCCCEEECCCCC-CccccCccChhhhhhcccCCCCC-CccccchHHh
Confidence 3444447778999999999 88887 4554 57899999999998 66778888899999999999854 4454444 36
Q ss_pred CCCCCEEeccCCcC
Q 043008 84 FNHLSMLCFRHCKN 97 (517)
Q Consensus 84 l~~L~~L~L~~~~~ 97 (517)
+++|+.|++++|+.
T Consensus 87 lp~L~~L~L~~N~I 100 (175)
T PF14580_consen 87 LPNLQELYLSNNKI 100 (175)
T ss_dssp -TT--EEE-TTS--
T ss_pred CCcCCEEECcCCcC
Confidence 88899999988764
No 34
>PLN03150 hypothetical protein; Provisional
Probab=98.62 E-value=6.9e-08 Score=105.96 Aligned_cols=101 Identities=16% Similarity=0.179 Sum_probs=54.6
Q ss_pred ccEEEccCCCCCCCCCC-CCCCCCccEEeeccccCCcccCccccCCCCCCEEeccCCcCccccCCCC-CCCCCcEEEEec
Q 043008 40 LKFINLSHSQCHIKIPD-PSETPNLERIDILNCTNPACVLSSITNFNHLSMLCFRHCKNLRHFPNNL-HFVCPIIIDFSY 117 (517)
Q Consensus 40 L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~~~~l~~~p~si~~l~~L~~L~L~~~~~l~~lp~~~-~l~sL~~L~L~~ 117 (517)
++.|+|++|.+...+|. +..+++|+.|+|++|...+.+|..++.+++|+.|+|++|.....+|..+ ++++|+.|+|++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 45555555555444552 5555555555555555555555555555555555555555555555555 555555666555
Q ss_pred CCCCCccCCCCCC----CcEEEeeccc
Q 043008 118 CVNLTEFPQISGN----IIDLILTETA 140 (517)
Q Consensus 118 c~~l~~~p~~~~~----L~~L~L~~~~ 140 (517)
|.....+|..+.. +..+++.+|.
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCc
Confidence 5555555544332 2345555543
No 35
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.61 E-value=6.4e-09 Score=101.23 Aligned_cols=219 Identities=19% Similarity=0.194 Sum_probs=153.8
Q ss_pred CCCCccEEeccCCCCCc-----cccccCCCCCCccEEEccCC---CCCCCCCC--------CCCCCCccEEeeccccCCc
Q 043008 12 KPKNLVELNLPYGHKVV-----QIWEGKKRAFKLKFINLSHS---QCHIKIPD--------PSETPNLERIDILNCTNPA 75 (517)
Q Consensus 12 ~~~~L~~L~L~~n~~l~-----~l~~~~~~l~~L~~L~Ls~~---~~l~~~p~--------l~~l~~L~~L~L~~~~~l~ 75 (517)
....+++|+|++| .+. .+-..+.+.++|+..++++= +...++|. +.++|.|++|+|++|....
T Consensus 28 ~~~s~~~l~lsgn-t~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~ 106 (382)
T KOG1909|consen 28 PMDSLTKLDLSGN-TFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGP 106 (382)
T ss_pred ccCceEEEeccCC-chhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCc
Confidence 4678899999999 765 23456677789999998863 22233442 4578899999999997665
Q ss_pred ccCcc----ccCCCCCCEEeccCCcCcccc-------------CCCC-CCCCCcEEEEecCCCCCccC--------CCCC
Q 043008 76 CVLSS----ITNFNHLSMLCFRHCKNLRHF-------------PNNL-HFVCPIIIDFSYCVNLTEFP--------QISG 129 (517)
Q Consensus 76 ~~p~s----i~~l~~L~~L~L~~~~~l~~l-------------p~~~-~l~sL~~L~L~~c~~l~~~p--------~~~~ 129 (517)
..+.. +..+..|+.|.|.+|-.-..- -..+ +-+.|++++.++| .+...+ ...+
T Consensus 107 ~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN-rlen~ga~~~A~~~~~~~ 185 (382)
T KOG1909|consen 107 KGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRN-RLENGGATALAEAFQSHP 185 (382)
T ss_pred cchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecc-ccccccHHHHHHHHHhcc
Confidence 54443 456788999999998543211 1112 5578999998884 455444 2245
Q ss_pred CCcEEEeecccCc-----ccCCcCCCCCCccEEEcccCcCCcc----ccccccCCCCCcEEEcCCCC------CcCCccC
Q 043008 130 NIIDLILTETAIE-----EVPSSTECLTNLQYLFLCSCKKLKR----VSTSICKFKSLVWLSLNNDL------TAIPQEI 194 (517)
Q Consensus 130 ~L~~L~L~~~~i~-----~lp~~i~~l~~L~~L~l~~~~~l~~----lp~~l~~l~~L~~L~Ls~~l------~~lp~~l 194 (517)
.|+.+.+..|.|. .+...+.++++|+.|||.+|.+... +...++.+++|++|+++.++ ..+...+
T Consensus 186 ~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al 265 (382)
T KOG1909|consen 186 TLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDAL 265 (382)
T ss_pred ccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHH
Confidence 6788899988886 2344578899999999999977543 44567788899999998754 1122222
Q ss_pred -CCCCCCCEEEecCCCCCc-----chhhhhcCCCCCEEeccCCC
Q 043008 195 -GCLSSLECLNLGGNNFEG-----LPASIKQISRLECLDLSYCN 232 (517)
Q Consensus 195 -~~l~~L~~L~Ls~n~l~~-----lp~~l~~l~~L~~L~L~~c~ 232 (517)
...++|+.|.+.+|.|+. +-.++...+.|..|+|++|.
T Consensus 266 ~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 266 KESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred hccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence 346889999999998873 45567778899999999854
No 36
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.58 E-value=5.5e-08 Score=88.49 Aligned_cols=35 Identities=26% Similarity=0.393 Sum_probs=11.3
Q ss_pred CCCCCEEEecCCCCCcch--hhhhcCCCCCEEeccCC
Q 043008 197 LSSLECLNLGGNNFEGLP--ASIKQISRLECLDLSYC 231 (517)
Q Consensus 197 l~~L~~L~Ls~n~l~~lp--~~l~~l~~L~~L~L~~c 231 (517)
+++|++|+|++|+|..+- ..+..+++|+.|+|.+|
T Consensus 87 lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~N 123 (175)
T PF14580_consen 87 LPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGN 123 (175)
T ss_dssp -TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-
T ss_pred CCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCC
Confidence 455555555555554322 23445555555555553
No 37
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.51 E-value=3.3e-07 Score=93.37 Aligned_cols=63 Identities=21% Similarity=0.318 Sum_probs=42.3
Q ss_pred ccCCCCCCEEeccCCcCccccCCCCCCCCCcEEEEecCCCCCccCCCC-CCCcEEEeecc-cCcccCC
Q 043008 81 ITNFNHLSMLCFRHCKNLRHFPNNLHFVCPIIIDFSYCVNLTEFPQIS-GNIIDLILTET-AIEEVPS 146 (517)
Q Consensus 81 i~~l~~L~~L~L~~~~~l~~lp~~~~l~sL~~L~L~~c~~l~~~p~~~-~~L~~L~L~~~-~i~~lp~ 146 (517)
+..+.+++.|++++| .++.+|. -..+|+.|.+++|..++.+|+.+ .+|+.|.+.++ .+..+|.
T Consensus 48 ~~~~~~l~~L~Is~c-~L~sLP~--LP~sLtsL~Lsnc~nLtsLP~~LP~nLe~L~Ls~Cs~L~sLP~ 112 (426)
T PRK15386 48 IEEARASGRLYIKDC-DIESLPV--LPNELTEITIENCNNLTTLPGSIPEGLEKLTVCHCPEISGLPE 112 (426)
T ss_pred HHHhcCCCEEEeCCC-CCcccCC--CCCCCcEEEccCCCCcccCCchhhhhhhheEccCccccccccc
Confidence 445678888999888 6667772 23468888888888887777533 35566666655 4445543
No 38
>PLN03150 hypothetical protein; Provisional
Probab=98.48 E-value=3e-07 Score=100.91 Aligned_cols=103 Identities=26% Similarity=0.335 Sum_probs=72.1
Q ss_pred CccEEEcccCcCCccccccccCCCCCcEEEcCCCC--CcCCccCCCCCCCCEEEecCCCCC-cchhhhhcCCCCCEEecc
Q 043008 153 NLQYLFLCSCKKLKRVSTSICKFKSLVWLSLNNDL--TAIPQEIGCLSSLECLNLGGNNFE-GLPASIKQISRLECLDLS 229 (517)
Q Consensus 153 ~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~Ls~~l--~~lp~~l~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~ 229 (517)
.++.|+|++|.+.+.+|..+..+++|+.|+|++|. +.+|..++.+++|+.|+|++|++. .+|..+.++++|+.|+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 36777777777777777777788888888886653 467777778888888888888877 477778888888888888
Q ss_pred CCCCCCcCCCCC----CCccEEecccccCc
Q 043008 230 YCNSLQSLPELP----LHLEVLLATNCKRL 255 (517)
Q Consensus 230 ~c~~l~~lp~l~----~~L~~L~~~~c~~l 255 (517)
+|+....+|... .++..+++.+...+
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~l 528 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGL 528 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccc
Confidence 766656666532 23344555544433
No 39
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.37 E-value=3.4e-08 Score=103.42 Aligned_cols=196 Identities=20% Similarity=0.199 Sum_probs=113.4
Q ss_pred CCCCccEEEccCCCCCCCCCCCCCCCCccEEeeccccCCcccCccccCCCCCCEEeccCCcCccccCCCCCCCCCcEEEE
Q 043008 36 RAFKLKFINLSHSQCHIKIPDPSETPNLERIDILNCTNPACVLSSITNFNHLSMLCFRHCKNLRHFPNNLHFVCPIIIDF 115 (517)
Q Consensus 36 ~l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~~~~l~~~p~si~~l~~L~~L~L~~~~~l~~lp~~~~l~sL~~L~L 115 (517)
.+..++.++++.|.+......+..+.+|+.|++.+|. +..+...+..+++|++|++++|.+... ...-.+..|+.|++
T Consensus 70 ~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~-i~~i~~~l~~~~~L~~L~ls~N~I~~i-~~l~~l~~L~~L~l 147 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNK-IEKIENLLSSLVNLQVLDLSFNKITKL-EGLSTLTLLKELNL 147 (414)
T ss_pred HhHhHHhhccchhhhhhhhcccccccceeeeeccccc-hhhcccchhhhhcchheeccccccccc-cchhhccchhhhee
Confidence 4556666666666643323346677777777777763 344433366677777777777654432 22115555777777
Q ss_pred ecCCCCCccCCC--CCCCcEEEeecccCcccCCc-CCCCCCccEEEcccCcCCccccccccCCCCCcEEEcCCCCCcCCc
Q 043008 116 SYCVNLTEFPQI--SGNIIDLILTETAIEEVPSS-TECLTNLQYLFLCSCKKLKRVSTSICKFKSLVWLSLNNDLTAIPQ 192 (517)
Q Consensus 116 ~~c~~l~~~p~~--~~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~Ls~~l~~lp~ 192 (517)
++|. +..+... +.+|+.+++++|.+..+... ...+.+|+.+.+.+|.....- .+..+..+..+++..+...--.
T Consensus 148 ~~N~-i~~~~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~--~~~~~~~l~~~~l~~n~i~~~~ 224 (414)
T KOG0531|consen 148 SGNL-ISDISGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREIE--GLDLLKKLVLLSLLDNKISKLE 224 (414)
T ss_pred ccCc-chhccCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhccc--chHHHHHHHHhhcccccceecc
Confidence 7743 4444433 55667777777777766553 466777777777776543221 1222222333344333222112
Q ss_pred cCCCCCC--CCEEEecCCCCCcchhhhhcCCCCCEEeccCCCCCCcC
Q 043008 193 EIGCLSS--LECLNLGGNNFEGLPASIKQISRLECLDLSYCNSLQSL 237 (517)
Q Consensus 193 ~l~~l~~--L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~c~~l~~l 237 (517)
.+..+.. |+.+++++|.+..++..+..+..+..|++.+ +++..+
T Consensus 225 ~l~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~-n~~~~~ 270 (414)
T KOG0531|consen 225 GLNELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSS-NRISNL 270 (414)
T ss_pred CcccchhHHHHHHhcccCccccccccccccccccccchhh-cccccc
Confidence 2233333 7888888888888776777788888888886 444433
No 40
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.30 E-value=7e-07 Score=66.58 Aligned_cols=57 Identities=28% Similarity=0.323 Sum_probs=33.0
Q ss_pred CCccEEeccCCCCCcccc-ccCCCCCCccEEEccCCCCCCCCC-CCCCCCCccEEeeccc
Q 043008 14 KNLVELNLPYGHKVVQIW-EGKKRAFKLKFINLSHSQCHIKIP-DPSETPNLERIDILNC 71 (517)
Q Consensus 14 ~~L~~L~L~~n~~l~~l~-~~~~~l~~L~~L~Ls~~~~l~~~p-~l~~l~~L~~L~L~~~ 71 (517)
++|++|+|++| +++.++ +.+..+++|++|++++|.+....| .|.++++|++|++++|
T Consensus 1 p~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSS-TESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred CcCcEEECCCC-CCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 35666666666 666664 355566666666666665432222 2566666666666655
No 41
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.28 E-value=6e-08 Score=101.59 Aligned_cols=209 Identities=20% Similarity=0.192 Sum_probs=133.2
Q ss_pred CCCccEEeccCCCCCccccccCCCCCCccEEEccCCCCCCCCCC-CCCCCCccEEeeccccCCcccCccccCCCCCCEEe
Q 043008 13 PKNLVELNLPYGHKVVQIWEGKKRAFKLKFINLSHSQCHIKIPD-PSETPNLERIDILNCTNPACVLSSITNFNHLSMLC 91 (517)
Q Consensus 13 ~~~L~~L~L~~n~~l~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~~~~l~~~p~si~~l~~L~~L~ 91 (517)
+..+..+.++.| .+.++-..+..+.+|..|++.+|. +..+.+ +..+++|++|+|++|.+.. + ..+..++.|+.|+
T Consensus 71 l~~l~~l~l~~n-~i~~~~~~l~~~~~l~~l~l~~n~-i~~i~~~l~~~~~L~~L~ls~N~I~~-i-~~l~~l~~L~~L~ 146 (414)
T KOG0531|consen 71 LTSLKELNLRQN-LIAKILNHLSKLKSLEALDLYDNK-IEKIENLLSSLVNLQVLDLSFNKITK-L-EGLSTLTLLKELN 146 (414)
T ss_pred hHhHHhhccchh-hhhhhhcccccccceeeeeccccc-hhhcccchhhhhcchheecccccccc-c-cchhhccchhhhe
Confidence 455666667777 676654556777888888888887 555666 7788888888888875433 3 3466677788888
Q ss_pred ccCCcCccccCCCCCCCCCcEEEEecCCCCCccC---CCCCCCcEEEeecccCcccCCcCCCCCCccEEEcccCcCCccc
Q 043008 92 FRHCKNLRHFPNNLHFVCPIIIDFSYCVNLTEFP---QISGNIIDLILTETAIEEVPSSTECLTNLQYLFLCSCKKLKRV 168 (517)
Q Consensus 92 L~~~~~l~~lp~~~~l~sL~~L~L~~c~~l~~~p---~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~l 168 (517)
+.+|... .+...-.+++|+.+++++|.....-+ ....+++.+++.+|.+..+.. +..+..+..+++..|.+...-
T Consensus 147 l~~N~i~-~~~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~~-~~~~~~l~~~~l~~n~i~~~~ 224 (414)
T KOG0531|consen 147 LSGNLIS-DISGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREIEG-LDLLKKLVLLSLLDNKISKLE 224 (414)
T ss_pred eccCcch-hccCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhcccc-hHHHHHHHHhhcccccceecc
Confidence 8887543 33331157888888888866544444 345566778888888876542 334445555566666544322
Q ss_pred cccccCCC--CCcEEEcCCCC-CcCCccCCCCCCCCEEEecCCCCCcchhhhhcCCCCCEEeccC
Q 043008 169 STSICKFK--SLVWLSLNNDL-TAIPQEIGCLSSLECLNLGGNNFEGLPASIKQISRLECLDLSY 230 (517)
Q Consensus 169 p~~l~~l~--~L~~L~Ls~~l-~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~ 230 (517)
+ +..+. .|+.+.++++- ..++..+..+..+..|++.+|++..+. .+.....+..+....
T Consensus 225 ~--l~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~~~~~~-~~~~~~~~~~~~~~~ 286 (414)
T KOG0531|consen 225 G--LNELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSNRISNLE-GLERLPKLSELWLND 286 (414)
T ss_pred C--cccchhHHHHHHhcccCccccccccccccccccccchhhccccccc-cccccchHHHhccCc
Confidence 1 11222 37778887654 444467788899999999999887654 233444444444444
No 42
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.26 E-value=3.4e-06 Score=86.06 Aligned_cols=132 Identities=15% Similarity=0.171 Sum_probs=86.3
Q ss_pred CCCccEEeccCCCCCccccccCCCCCCccEEEccCCCCCCCCCCCCCCCCccEEeeccccCCcccCccccCCCCCCEEec
Q 043008 13 PKNLVELNLPYGHKVVQIWEGKKRAFKLKFINLSHSQCHIKIPDPSETPNLERIDILNCTNPACVLSSITNFNHLSMLCF 92 (517)
Q Consensus 13 ~~~L~~L~L~~n~~l~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~~~~l~~~p~si~~l~~L~~L~L 92 (517)
+.++..|++++| .++.+|. --.+|+.|++++|..++.+|+.- .++|++|++++|..+..+|.+ |+.|++
T Consensus 51 ~~~l~~L~Is~c-~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L-P~nLe~L~Ls~Cs~L~sLP~s------Le~L~L 119 (426)
T PRK15386 51 ARASGRLYIKDC-DIESLPV---LPNELTEITIENCNNLTTLPGSI-PEGLEKLTVCHCPEISGLPES------VRSLEI 119 (426)
T ss_pred hcCCCEEEeCCC-CCcccCC---CCCCCcEEEccCCCCcccCCchh-hhhhhheEccCcccccccccc------cceEEe
Confidence 577888888888 8888872 22368888888888777777521 368888999888767667654 555555
Q ss_pred cCC--cCccccCCCCCCCCCcEEEEecCCCC--CccCC-CCCCCcEEEeecccCcccCCcCCCCCCccEEEcccC
Q 043008 93 RHC--KNLRHFPNNLHFVCPIIIDFSYCVNL--TEFPQ-ISGNIIDLILTETAIEEVPSSTECLTNLQYLFLCSC 162 (517)
Q Consensus 93 ~~~--~~l~~lp~~~~l~sL~~L~L~~c~~l--~~~p~-~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~~ 162 (517)
..+ ..+..+|. +|+.|.+.+++.. ..+|. ...+|+.|.+.++....+|..+. .+|+.|+++.+
T Consensus 120 ~~n~~~~L~~LPs-----sLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i~LP~~LP--~SLk~L~ls~n 187 (426)
T PRK15386 120 KGSATDSIKNVPN-----GLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNIILPEKLP--ESLQSITLHIE 187 (426)
T ss_pred CCCCCcccccCcc-----hHhheeccccccccccccccccCCcccEEEecCCCcccCccccc--ccCcEEEeccc
Confidence 543 33555665 4556666443211 12222 22567888888877766665444 58888888765
No 43
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.25 E-value=1.1e-08 Score=97.68 Aligned_cols=170 Identities=22% Similarity=0.259 Sum_probs=102.0
Q ss_pred CccEEEccCCCCCCCCC-C-CCCCCCccEEeeccccCCcccCccccCCCCCCEEeccCCcCccccCCCC---CCCCCcEE
Q 043008 39 KLKFINLSHSQCHIKIP-D-PSETPNLERIDILNCTNPACVLSSITNFNHLSMLCFRHCKNLRHFPNNL---HFVCPIII 113 (517)
Q Consensus 39 ~L~~L~Ls~~~~l~~~p-~-l~~l~~L~~L~L~~~~~l~~~p~si~~l~~L~~L~L~~~~~l~~lp~~~---~l~sL~~L 113 (517)
.|++||||...+....- . ++.+.+|+.|.|.|+.....+-..|..-.+|+.|||+.|...+...... .++.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 57778887765432211 1 4667778888888776655566667777788888888877665443322 67888888
Q ss_pred EEecCCCCCcc-----CCCCCCCcEEEeecccCc----ccCCcCCCCCCccEEEcccCcCCcc-ccccccCCCCCcEEEc
Q 043008 114 DFSYCVNLTEF-----PQISGNIIDLILTETAIE----EVPSSTECLTNLQYLFLCSCKKLKR-VSTSICKFKSLVWLSL 183 (517)
Q Consensus 114 ~L~~c~~l~~~-----p~~~~~L~~L~L~~~~i~----~lp~~i~~l~~L~~L~l~~~~~l~~-lp~~l~~l~~L~~L~L 183 (517)
++++|...... ..+.++|+.|+|+|+.=. .+..-...+++|..||+++|..+.. .-..|.+++.|++|.+
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl 345 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL 345 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence 88888655432 233456677777764311 2222235677888888887754433 2234556666666666
Q ss_pred CCCCCcCCcc---CCCCCCCCEEEecCC
Q 043008 184 NNDLTAIPQE---IGCLSSLECLNLGGN 208 (517)
Q Consensus 184 s~~l~~lp~~---l~~l~~L~~L~Ls~n 208 (517)
+.+..-+|.. +...++|.+|++.++
T Consensus 346 sRCY~i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 346 SRCYDIIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred hhhcCCChHHeeeeccCcceEEEEeccc
Confidence 6655444442 344445555554443
No 44
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.24 E-value=1.2e-06 Score=65.32 Aligned_cols=58 Identities=26% Similarity=0.358 Sum_probs=41.2
Q ss_pred CCccEEEccCCCCCCCCC--CCCCCCCccEEeeccccCCcccCccccCCCCCCEEeccCCc
Q 043008 38 FKLKFINLSHSQCHIKIP--DPSETPNLERIDILNCTNPACVLSSITNFNHLSMLCFRHCK 96 (517)
Q Consensus 38 ~~L~~L~Ls~~~~l~~~p--~l~~l~~L~~L~L~~~~~l~~~p~si~~l~~L~~L~L~~~~ 96 (517)
++|++|++++|+ +..+| .|.++++|++|++++|......+..|.++++|++|++++|+
T Consensus 1 p~L~~L~l~~n~-l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNK-LTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSST-ESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCC-CCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 467788888876 44555 26778888888888776655555677777788888777764
No 45
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.00 E-value=1e-06 Score=86.11 Aligned_cols=241 Identities=16% Similarity=0.136 Sum_probs=137.1
Q ss_pred cCCCCCCccEEEccCCCCCCCCC-----CCCCCCCccEEeeccccCCc----ccCc-------cccCCCCCCEEeccCCc
Q 043008 33 GKKRAFKLKFINLSHSQCHIKIP-----DPSETPNLERIDILNCTNPA----CVLS-------SITNFNHLSMLCFRHCK 96 (517)
Q Consensus 33 ~~~~l~~L~~L~Ls~~~~l~~~p-----~l~~l~~L~~L~L~~~~~l~----~~p~-------si~~l~~L~~L~L~~~~ 96 (517)
....+..++.|+|++|.+-.+-. .+.+.++|+.-++++- ..+ ++|+ .+-..++|++|||++|-
T Consensus 25 ~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA 103 (382)
T KOG1909|consen 25 ELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNA 103 (382)
T ss_pred HhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccc
Confidence 34567889999999998654432 2567778999888874 222 3333 34456689999999887
Q ss_pred CccccCCCC-----CCCCCcEEEEecCCCCCccCCCCCC-CcEEEeecccCcccCCcCCCCCCccEEEcccCcCCc----
Q 043008 97 NLRHFPNNL-----HFVCPIIIDFSYCVNLTEFPQISGN-IIDLILTETAIEEVPSSTECLTNLQYLFLCSCKKLK---- 166 (517)
Q Consensus 97 ~l~~lp~~~-----~l~sL~~L~L~~c~~l~~~p~~~~~-L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~---- 166 (517)
.-...+..+ .+.+|+.|.|.+|..-..--..++. |..|. ...-+..-+.|+.+....|..-.
T Consensus 104 ~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~--------~~kk~~~~~~Lrv~i~~rNrlen~ga~ 175 (382)
T KOG1909|consen 104 FGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELA--------VNKKAASKPKLRVFICGRNRLENGGAT 175 (382)
T ss_pred cCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHH--------HHhccCCCcceEEEEeeccccccccHH
Confidence 655444433 5778888888887532211000000 00000 01113334566666666554321
Q ss_pred cccccccCCCCCcEEEcCCCC------CcCCccCCCCCCCCEEEecCCCCCc-----chhhhhcCCCCCEEeccCCCCCC
Q 043008 167 RVSTSICKFKSLVWLSLNNDL------TAIPQEIGCLSSLECLNLGGNNFEG-----LPASIKQISRLECLDLSYCNSLQ 235 (517)
Q Consensus 167 ~lp~~l~~l~~L~~L~Ls~~l------~~lp~~l~~l~~L~~L~Ls~n~l~~-----lp~~l~~l~~L~~L~L~~c~~l~ 235 (517)
.+...+...+.|+.+.+..|- ..+-..+..+++|+.|||..|-|+. +...+..+++|+.|++++|..-.
T Consensus 176 ~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~ 255 (382)
T KOG1909|consen 176 ALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLEN 255 (382)
T ss_pred HHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccccccc
Confidence 122334455666666665432 1223346677788888888887763 45566677788888888875432
Q ss_pred c--------CCCCCCCccEEecccccCcCc-CCCCCchhhhcchhhHHhhhcCCCC
Q 043008 236 S--------LPELPLHLEVLLATNCKRLQS-LPEIPSCLEELDASVLEKLSKHSFG 282 (517)
Q Consensus 236 ~--------lp~l~~~L~~L~~~~c~~l~~-l~~~~~~L~~L~~l~~~~Ls~n~~~ 282 (517)
. +.+..++|+.|.+.++.--.. ......++...+.+..++|++|.+.
T Consensus 256 ~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 256 EGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred ccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 1 223345666666655432111 1112234555677788888888873
No 46
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.88 E-value=1.5e-07 Score=89.91 Aligned_cols=172 Identities=16% Similarity=0.144 Sum_probs=119.0
Q ss_pred CccEEeccCCCCCc--cccccCCCCCCccEEEccCCCCCCCCC-CCCCCCCccEEeeccccCCcccCc--cccCCCCCCE
Q 043008 15 NLVELNLPYGHKVV--QIWEGKKRAFKLKFINLSHSQCHIKIP-DPSETPNLERIDILNCTNPACVLS--SITNFNHLSM 89 (517)
Q Consensus 15 ~L~~L~L~~n~~l~--~l~~~~~~l~~L~~L~Ls~~~~l~~~p-~l~~l~~L~~L~L~~~~~l~~~p~--si~~l~~L~~ 89 (517)
.|+.|||++. .|+ ++-.-++.+.+|+.|.|.+++.-..+- .+.+-.+|+.|+|+.|....+..- -+.+++.|..
T Consensus 186 Rlq~lDLS~s-~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 186 RLQHLDLSNS-VITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhHHhhcchh-heeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 4899999988 776 444556778899999999987544444 377888999999999977664322 3567889999
Q ss_pred EeccCCcCccccCCCC---CCCCCcEEEEecCCCCC------ccCCCCCCCcEEEeecccC-c-ccCCcCCCCCCccEEE
Q 043008 90 LCFRHCKNLRHFPNNL---HFVCPIIIDFSYCVNLT------EFPQISGNIIDLILTETAI-E-EVPSSTECLTNLQYLF 158 (517)
Q Consensus 90 L~L~~~~~l~~lp~~~---~l~sL~~L~L~~c~~l~------~~p~~~~~L~~L~L~~~~i-~-~lp~~i~~l~~L~~L~ 158 (517)
|+|+.|-.....-..+ --+.|..|+++||...- .+..-..++..|+|+++.. + .+-..+.+++.|++|.
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lS 344 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLS 344 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeee
Confidence 9999986554332222 34678888888875321 2223345678888887543 2 3334467899999999
Q ss_pred cccCcCCc-cccccccCCCCCcEEEcCCCC
Q 043008 159 LCSCKKLK-RVSTSICKFKSLVWLSLNNDL 187 (517)
Q Consensus 159 l~~~~~l~-~lp~~l~~l~~L~~L~Ls~~l 187 (517)
++.|..+. ..--.+...++|..|++.+..
T Consensus 345 lsRCY~i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 345 LSRCYDIIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred hhhhcCCChHHeeeeccCcceEEEEecccc
Confidence 99996432 111246788999999987643
No 47
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.81 E-value=1.3e-06 Score=92.49 Aligned_cols=126 Identities=26% Similarity=0.269 Sum_probs=93.6
Q ss_pred CcEEEeecccCcccCCcCCCCCCccEEEcccCcCCccccccccCCCCCcEEEcCCC-CCcCCcc-CCCCCCCCEEEecCC
Q 043008 131 IIDLILTETAIEEVPSSTECLTNLQYLFLCSCKKLKRVSTSICKFKSLVWLSLNND-LTAIPQE-IGCLSSLECLNLGGN 208 (517)
Q Consensus 131 L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~Ls~~-l~~lp~~-l~~l~~L~~L~Ls~n 208 (517)
|...+.++|++..+..++.-++.|+.|+|+.|++...- .+..++.|++|||+.| +..+|.. ...+ .|+.|.|++|
T Consensus 166 L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lrnN 242 (1096)
T KOG1859|consen 166 LATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLRNN 242 (1096)
T ss_pred HhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhh-hheeeeeccc
Confidence 46667788888888888898999999999999877654 6888999999999765 5666653 2233 3999999999
Q ss_pred CCCcchhhhhcCCCCCEEeccCCCCCCcCCCCCCCccEEecccccCcCcCCCCCchhhhcchhhHHhhhcCCCCC
Q 043008 209 NFEGLPASIKQISRLECLDLSYCNSLQSLPELPLHLEVLLATNCKRLQSLPEIPSCLEELDASVLEKLSKHSFGE 283 (517)
Q Consensus 209 ~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~l~~~L~~L~~~~c~~l~~l~~~~~~L~~L~~l~~~~Ls~n~~~~ 283 (517)
.++++- .+.+|.+|+.||+++ |.+....++ .-|..|..+..+.|.+||+-+
T Consensus 243 ~l~tL~-gie~LksL~~LDlsy-Nll~~hseL----------------------~pLwsLs~L~~L~LeGNPl~c 293 (1096)
T KOG1859|consen 243 ALTTLR-GIENLKSLYGLDLSY-NLLSEHSEL----------------------EPLWSLSSLIVLWLEGNPLCC 293 (1096)
T ss_pred HHHhhh-hHHhhhhhhccchhH-hhhhcchhh----------------------hHHHHHHHHHHHhhcCCcccc
Confidence 999887 788999999999998 444332221 124445556667777888653
No 48
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.80 E-value=2.9e-05 Score=53.59 Aligned_cols=42 Identities=31% Similarity=0.542 Sum_probs=33.3
Q ss_pred CCCCEEEecCCCCCcchhhhhcCCCCCEEeccCCCCCCcCCCC
Q 043008 198 SSLECLNLGGNNFEGLPASIKQISRLECLDLSYCNSLQSLPEL 240 (517)
Q Consensus 198 ~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~l 240 (517)
++|++|++++|+|+.+|..+.+|++|+.|++++| .+++++.+
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N-~i~~i~~l 42 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNN-PISDISPL 42 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSS-CCSBEGGG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCC-CCCCCcCC
Confidence 4789999999999999988999999999999984 67766543
No 49
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.71 E-value=2.8e-05 Score=53.67 Aligned_cols=35 Identities=29% Similarity=0.345 Sum_probs=23.8
Q ss_pred CCccEEeccCCCCCccccccCCCCCCccEEEccCCC
Q 043008 14 KNLVELNLPYGHKVVQIWEGKKRAFKLKFINLSHSQ 49 (517)
Q Consensus 14 ~~L~~L~L~~n~~l~~l~~~~~~l~~L~~L~Ls~~~ 49 (517)
++|++|++++| .++.++..+.++++|++|++++|.
T Consensus 1 ~~L~~L~l~~N-~i~~l~~~l~~l~~L~~L~l~~N~ 35 (44)
T PF12799_consen 1 KNLEELDLSNN-QITDLPPELSNLPNLETLNLSNNP 35 (44)
T ss_dssp TT-SEEEETSS-S-SSHGGHGTTCTTSSEEEETSSC
T ss_pred CcceEEEccCC-CCcccCchHhCCCCCCEEEecCCC
Confidence 46777777777 777776667777777777777776
No 50
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.62 E-value=6.4e-06 Score=90.68 Aligned_cols=145 Identities=17% Similarity=0.124 Sum_probs=101.1
Q ss_pred CCCCEEeccCCcCc-cccCCCC--CCCCCcEEEEecCCCC----CccCCCCCCCcEEEeecccCcccCCcCCCCCCccEE
Q 043008 85 NHLSMLCFRHCKNL-RHFPNNL--HFVCPIIIDFSYCVNL----TEFPQISGNIIDLILTETAIEEVPSSTECLTNLQYL 157 (517)
Q Consensus 85 ~~L~~L~L~~~~~l-~~lp~~~--~l~sL~~L~L~~c~~l----~~~p~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L 157 (517)
.+|++||+++.... ...|..+ .+|+|+.|.++|-... ..+-..+.||..||+++|+++.+ ..++++++|+.|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L 200 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVL 200 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHH
Confidence 57889999885443 2344444 7899999999883221 22335678899999999999988 779999999999
Q ss_pred EcccCcCCc-cccccccCCCCCcEEEcCCCC--------CcCCccCCCCCCCCEEEecCCCCCc--chhhhhcCCCCCEE
Q 043008 158 FLCSCKKLK-RVSTSICKFKSLVWLSLNNDL--------TAIPQEIGCLSSLECLNLGGNNFEG--LPASIKQISRLECL 226 (517)
Q Consensus 158 ~l~~~~~l~-~lp~~l~~l~~L~~L~Ls~~l--------~~lp~~l~~l~~L~~L~Ls~n~l~~--lp~~l~~l~~L~~L 226 (517)
.+.+-.... .--..+.+|++|+.||+|... ....+.-..+|+|+.||.|++.+.. +-..+...++|+.+
T Consensus 201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i 280 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQI 280 (699)
T ss_pred hccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhhh
Confidence 998765443 222357789999999998732 1111223457899999999988874 44455566666666
Q ss_pred eccC
Q 043008 227 DLSY 230 (517)
Q Consensus 227 ~L~~ 230 (517)
.+-+
T Consensus 281 ~~~~ 284 (699)
T KOG3665|consen 281 AALD 284 (699)
T ss_pred hhhh
Confidence 5543
No 51
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.53 E-value=3.8e-05 Score=73.79 Aligned_cols=183 Identities=17% Similarity=0.193 Sum_probs=90.0
Q ss_pred CCCccEEEccCCCCCCCCCC----CCCCCCccEEeeccccCCcccCccc-cCCCCCCEEeccCCcCcc-ccCCCC-CCCC
Q 043008 37 AFKLKFINLSHSQCHIKIPD----PSETPNLERIDILNCTNPACVLSSI-TNFNHLSMLCFRHCKNLR-HFPNNL-HFVC 109 (517)
Q Consensus 37 l~~L~~L~Ls~~~~l~~~p~----l~~l~~L~~L~L~~~~~l~~~p~si-~~l~~L~~L~L~~~~~l~-~lp~~~-~l~s 109 (517)
...++.+||.+|.+ ....+ +.++|.|++|+|+.|.....+ .+. ..+.+|+.|-|.+...-- .....+ +++.
T Consensus 70 ~~~v~elDL~~N~i-SdWseI~~ile~lP~l~~LNls~N~L~s~I-~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~ 147 (418)
T KOG2982|consen 70 VTDVKELDLTGNLI-SDWSEIGAILEQLPALTTLNLSCNSLSSDI-KSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPK 147 (418)
T ss_pred hhhhhhhhcccchh-ccHHHHHHHHhcCccceEeeccCCcCCCcc-ccCcccccceEEEEEcCCCCChhhhhhhhhcchh
Confidence 45677777777763 23222 356777777777766432221 111 234466666665532111 111112 5555
Q ss_pred CcEEEEecCCCCCccCCCCCCCcEEEeecccCcccCCcCCCCCCccEEEcccCcCCcccc--ccccCCCCCcEEEcCCC-
Q 043008 110 PIIIDFSYCVNLTEFPQISGNIIDLILTETAIEEVPSSTECLTNLQYLFLCSCKKLKRVS--TSICKFKSLVWLSLNND- 186 (517)
Q Consensus 110 L~~L~L~~c~~l~~~p~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp--~~l~~l~~L~~L~Ls~~- 186 (517)
++.|.++.|+ ++.++++.+.++... +.+.+|.+..|....... ..-..++++..+.+..+
T Consensus 148 vtelHmS~N~-----------~rq~n~Dd~c~e~~s------~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~P 210 (418)
T KOG2982|consen 148 VTELHMSDNS-----------LRQLNLDDNCIEDWS------TEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGP 210 (418)
T ss_pred hhhhhhccch-----------hhhhccccccccccc------hhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCc
Confidence 5666665532 233333433333221 122222222221110000 00112334444444322
Q ss_pred CCcC--CccCCCCCCCCEEEecCCCCCcch--hhhhcCCCCCEEeccCCCCCCcCC
Q 043008 187 LTAI--PQEIGCLSSLECLNLGGNNFEGLP--ASIKQISRLECLDLSYCNSLQSLP 238 (517)
Q Consensus 187 l~~l--p~~l~~l~~L~~L~Ls~n~l~~lp--~~l~~l~~L~~L~L~~c~~l~~lp 238 (517)
+... -.....++.+-.|+|+.|+|.++. +.+..++.|..|.+.+++....+.
T Consensus 211 lK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~ 266 (418)
T KOG2982|consen 211 LKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLR 266 (418)
T ss_pred ccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccccccc
Confidence 2111 123445667778888888888754 567888899999888877666554
No 52
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.50 E-value=1.4e-05 Score=68.45 Aligned_cols=112 Identities=21% Similarity=0.287 Sum_probs=70.4
Q ss_pred cCCCCCcEEEcCCC-CCcCCccCC-CCCCCCEEEecCCCCCcchhhhhcCCCCCEEeccCCCCCCcCCCCCCCccEEecc
Q 043008 173 CKFKSLVWLSLNND-LTAIPQEIG-CLSSLECLNLGGNNFEGLPASIKQISRLECLDLSYCNSLQSLPELPLHLEVLLAT 250 (517)
Q Consensus 173 ~~l~~L~~L~Ls~~-l~~lp~~l~-~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~l~~~L~~L~~~ 250 (517)
.+...|+..+|++| +..+|+.+. ..+.+++|+|++|.|..+|..+..++.|+.|+++. |.+...|.....|+.|+..
T Consensus 50 ~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~-N~l~~~p~vi~~L~~l~~L 128 (177)
T KOG4579|consen 50 SKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRF-NPLNAEPRVIAPLIKLDML 128 (177)
T ss_pred hCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhccccc-CccccchHHHHHHHhHHHh
Confidence 33444555556554 355665543 34577788888888888888888888888888886 4455556544347777766
Q ss_pred cccCcCcCCCCCchhhhcchhhHHhhhcCCCCCcce
Q 043008 251 NCKRLQSLPEIPSCLEELDASVLEKLSKHSFGEEYR 286 (517)
Q Consensus 251 ~c~~l~~l~~~~~~L~~L~~l~~~~Ls~n~~~~~~~ 286 (517)
+.+.....+..-+ +-.=+.....++.++|+.+.++
T Consensus 129 ds~~na~~eid~d-l~~s~~~al~~lgnepl~~~~~ 163 (177)
T KOG4579|consen 129 DSPENARAEIDVD-LFYSSLPALIKLGNEPLGDETK 163 (177)
T ss_pred cCCCCccccCcHH-HhccccHHHHHhcCCcccccCc
Confidence 6666665554433 3333445566777888876653
No 53
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.18 E-value=1.1e-05 Score=85.60 Aligned_cols=101 Identities=20% Similarity=0.166 Sum_probs=70.6
Q ss_pred CCCccEEeccCCCCCccccccCCCCCCccEEEccCCCCCCCCCCC--CCCCCccEEeeccccCCcccCccccCCCCCCEE
Q 043008 13 PKNLVELNLPYGHKVVQIWEGKKRAFKLKFINLSHSQCHIKIPDP--SETPNLERIDILNCTNPACVLSSITNFNHLSML 90 (517)
Q Consensus 13 ~~~L~~L~L~~n~~l~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l--~~l~~L~~L~L~~~~~l~~~p~si~~l~~L~~L 90 (517)
++.|+.|+|++| ++.+. +.+..+++|++|||++|. +..+|.+ .++. |+.|+|++|. +.++ ..+.+|.+|+.|
T Consensus 186 l~ale~LnLshN-k~~~v-~~Lr~l~~LkhLDlsyN~-L~~vp~l~~~gc~-L~~L~lrnN~-l~tL-~gie~LksL~~L 259 (1096)
T KOG1859|consen 186 LPALESLNLSHN-KFTKV-DNLRRLPKLKHLDLSYNC-LRHVPQLSMVGCK-LQLLNLRNNA-LTTL-RGIENLKSLYGL 259 (1096)
T ss_pred HHHhhhhccchh-hhhhh-HHHHhcccccccccccch-hccccccchhhhh-heeeeecccH-HHhh-hhHHhhhhhhcc
Confidence 467788888888 88777 377888888888888887 6777764 3344 8888888873 3333 357788888888
Q ss_pred eccCCcCccccCCCC--CCCCCcEEEEecCC
Q 043008 91 CFRHCKNLRHFPNNL--HFVCPIIIDFSYCV 119 (517)
Q Consensus 91 ~L~~~~~l~~lp~~~--~l~sL~~L~L~~c~ 119 (517)
|+++|-....-.-.. .|.+|+.|.|.||.
T Consensus 260 DlsyNll~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 260 DLSYNLLSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred chhHhhhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 888875443221111 56777777887764
No 54
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.14 E-value=0.00078 Score=61.60 Aligned_cols=79 Identities=14% Similarity=0.156 Sum_probs=38.3
Q ss_pred CccEEeccCCCCCccccccCCCCCCccEEEccCCCCCCCCCCC-CCCCCccEEeeccccCCcccC--ccccCCCCCCEEe
Q 043008 15 NLVELNLPYGHKVVQIWEGKKRAFKLKFINLSHSQCHIKIPDP-SETPNLERIDILNCTNPACVL--SSITNFNHLSMLC 91 (517)
Q Consensus 15 ~L~~L~L~~n~~l~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l-~~l~~L~~L~L~~~~~l~~~p--~si~~l~~L~~L~ 91 (517)
+...+||++| .+..+ ..+..++.|.+|.|.+|.+...-|++ ..+++|+.|.|.+|.+ .++- .-+..+++|++|.
T Consensus 43 ~~d~iDLtdN-dl~~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi-~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 43 QFDAIDLTDN-DLRKL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSI-QELGDLDPLASCPKLEYLT 119 (233)
T ss_pred ccceeccccc-chhhc-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcch-hhhhhcchhccCCccceee
Confidence 4445555555 45444 34455555555555555544444443 2345555555555532 2111 1234445555555
Q ss_pred ccCCc
Q 043008 92 FRHCK 96 (517)
Q Consensus 92 L~~~~ 96 (517)
+-+|.
T Consensus 120 ll~Np 124 (233)
T KOG1644|consen 120 LLGNP 124 (233)
T ss_pred ecCCc
Confidence 55544
No 55
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.14 E-value=0.00016 Score=79.85 Aligned_cols=105 Identities=19% Similarity=0.225 Sum_probs=67.1
Q ss_pred CCccEEeccCCCCCcccc--ccCCCCCCccEEEccCCCCCCC-CCC-CCCCCCccEEeeccccCCcccCccccCCCCCCE
Q 043008 14 KNLVELNLPYGHKVVQIW--EGKKRAFKLKFINLSHSQCHIK-IPD-PSETPNLERIDILNCTNPACVLSSITNFNHLSM 89 (517)
Q Consensus 14 ~~L~~L~L~~n~~l~~l~--~~~~~l~~L~~L~Ls~~~~l~~-~p~-l~~l~~L~~L~L~~~~~l~~~p~si~~l~~L~~ 89 (517)
.+|+.|++++...+..-| .--..||.|+.|.+++=.+... .-. ..++|||..||++++. +..+ ..+++|++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~Tn-I~nl-~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTN-ISNL-SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCC-ccCc-HHHhccccHHH
Confidence 478888888764444444 2234578889888887543211 111 3578889999998863 3444 67888888888
Q ss_pred EeccCCcCcc--ccCCCCCCCCCcEEEEecCCC
Q 043008 90 LCFRHCKNLR--HFPNNLHFVCPIIIDFSYCVN 120 (517)
Q Consensus 90 L~L~~~~~l~--~lp~~~~l~sL~~L~L~~c~~ 120 (517)
|.+.+-.... .+-.-++|++|+.||+|.-..
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~ 232 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKN 232 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeecccccc
Confidence 8887643321 111223788888898887443
No 56
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.07 E-value=0.0013 Score=60.12 Aligned_cols=83 Identities=17% Similarity=0.059 Sum_probs=48.4
Q ss_pred CCCCccEEeccCCCCCccccccCCCCCCccEEEccCCCCCCCCCCCCCCCCccEEeeccccCCcccCccccCCCCCCEEe
Q 043008 12 KPKNLVELNLPYGHKVVQIWEGKKRAFKLKFINLSHSQCHIKIPDPSETPNLERIDILNCTNPACVLSSITNFNHLSMLC 91 (517)
Q Consensus 12 ~~~~L~~L~L~~n~~l~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~~~~l~~~p~si~~l~~L~~L~ 91 (517)
+.-.=++++|++. ++..+-.--.-+.+...+||++|. +..++.|..++.|..|.|.+|.+...-|.--..+++|..|.
T Consensus 17 ~~~~e~e~~LR~l-kip~ienlg~~~d~~d~iDLtdNd-l~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~ 94 (233)
T KOG1644|consen 17 NSVRERELDLRGL-KIPVIENLGATLDQFDAIDLTDND-LRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLI 94 (233)
T ss_pred hhccccccccccc-cccchhhccccccccceecccccc-hhhcccCCCccccceEEecCCcceeeccchhhhccccceEE
Confidence 4444556666666 554442211223466778888876 56667777778888888877754443333223345566666
Q ss_pred ccCCc
Q 043008 92 FRHCK 96 (517)
Q Consensus 92 L~~~~ 96 (517)
|.+|.
T Consensus 95 LtnNs 99 (233)
T KOG1644|consen 95 LTNNS 99 (233)
T ss_pred ecCcc
Confidence 66553
No 57
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.96 E-value=0.00018 Score=68.44 Aligned_cols=151 Identities=13% Similarity=0.055 Sum_probs=93.1
Q ss_pred CCCccEEeccCCCCCc-----cccccCCCCCCccEEEccCCCC---CCC--------CCCCCCCCCccEEeeccccCCcc
Q 043008 13 PKNLVELNLPYGHKVV-----QIWEGKKRAFKLKFINLSHSQC---HIK--------IPDPSETPNLERIDILNCTNPAC 76 (517)
Q Consensus 13 ~~~L~~L~L~~n~~l~-----~l~~~~~~l~~L~~L~Ls~~~~---l~~--------~p~l~~l~~L~~L~L~~~~~l~~ 76 (517)
+..+++++||+| .+. .+-..+.+-.+|+..++++-.- ..+ +|.+-++|.|++.+|++|.....
T Consensus 29 ~d~~~evdLSGN-tigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~ 107 (388)
T COG5238 29 MDELVEVDLSGN-TIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE 107 (388)
T ss_pred hcceeEEeccCC-cccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence 567888889888 665 2334556677888888776421 111 23356788888888888877666
Q ss_pred cCcc----ccCCCCCCEEeccCCcCccccC-------------CCC-CCCCCcEEEEecCCCCCccCC--------CCCC
Q 043008 77 VLSS----ITNFNHLSMLCFRHCKNLRHFP-------------NNL-HFVCPIIIDFSYCVNLTEFPQ--------ISGN 130 (517)
Q Consensus 77 ~p~s----i~~l~~L~~L~L~~~~~l~~lp-------------~~~-~l~sL~~L~L~~c~~l~~~p~--------~~~~ 130 (517)
.|.. |..-+.|++|.|++|-.-..-- ... +-+.|++.+...| .+...|. .-.+
T Consensus 108 ~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrN-Rlengs~~~~a~~l~sh~~ 186 (388)
T COG5238 108 FPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRN-RLENGSKELSAALLESHEN 186 (388)
T ss_pred cchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccc-hhccCcHHHHHHHHHhhcC
Confidence 5543 4566778888888774321110 111 4577888887774 3444442 1235
Q ss_pred CcEEEeecccCcc------cCCcCCCCCCccEEEcccCcCC
Q 043008 131 IIDLILTETAIEE------VPSSTECLTNLQYLFLCSCKKL 165 (517)
Q Consensus 131 L~~L~L~~~~i~~------lp~~i~~l~~L~~L~l~~~~~l 165 (517)
|+.+.+..|.|+. +-..+..+.+|+.||+.+|.++
T Consensus 187 lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft 227 (388)
T COG5238 187 LKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFT 227 (388)
T ss_pred ceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchh
Confidence 6777777777761 1122445677777777777654
No 58
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=96.86 E-value=7.5e-05 Score=74.96 Aligned_cols=245 Identities=17% Similarity=0.182 Sum_probs=133.8
Q ss_pred CCCCccEEeccCCCCCccc--cccCCCCCCccEEEccCCCCCCCCC--C-CCCCCCccEEeeccccCCcc--cCccccCC
Q 043008 12 KPKNLVELNLPYGHKVVQI--WEGKKRAFKLKFINLSHSQCHIKIP--D-PSETPNLERIDILNCTNPAC--VLSSITNF 84 (517)
Q Consensus 12 ~~~~L~~L~L~~n~~l~~l--~~~~~~l~~L~~L~Ls~~~~l~~~p--~-l~~l~~L~~L~L~~~~~l~~--~p~si~~l 84 (517)
++++++.|++.++.+++.- -..-+.+++|+.|+|..|..++... . ..++++|++|+++.|..+.. +-.-..+.
T Consensus 162 ~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~ 241 (483)
T KOG4341|consen 162 NCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGC 241 (483)
T ss_pred hCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccc
Confidence 6888888888888544421 2233567889999998876554433 1 35788899999998865543 11223445
Q ss_pred CCCCEEeccCCcCccccC-CCC--CCCCCcEEEEecCCCCCccCC-----CCCCCcEEEeeccc-Cc--ccCCcCCCCCC
Q 043008 85 NHLSMLCFRHCKNLRHFP-NNL--HFVCPIIIDFSYCVNLTEFPQ-----ISGNIIDLILTETA-IE--EVPSSTECLTN 153 (517)
Q Consensus 85 ~~L~~L~L~~~~~l~~lp-~~~--~l~sL~~L~L~~c~~l~~~p~-----~~~~L~~L~L~~~~-i~--~lp~~i~~l~~ 153 (517)
.+|+.+.+++|...+.-. ..+ ...-+.++++..|..++.... ....++.|..++.. +. .+-.-..+..+
T Consensus 242 ~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~ 321 (483)
T KOG4341|consen 242 KELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHN 321 (483)
T ss_pred hhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCc
Confidence 556666666665432100 000 222333444445544433220 11223444444422 21 11111345677
Q ss_pred ccEEEcccCcCCcccccc--ccCCCCCcEEEcCCCC----CcCCccCCCCCCCCEEEecCCCCC-c-----chhhhhcCC
Q 043008 154 LQYLFLCSCKKLKRVSTS--ICKFKSLVWLSLNNDL----TAIPQEIGCLSSLECLNLGGNNFE-G-----LPASIKQIS 221 (517)
Q Consensus 154 L~~L~l~~~~~l~~lp~~--l~~l~~L~~L~Ls~~l----~~lp~~l~~l~~L~~L~Ls~n~l~-~-----lp~~l~~l~ 221 (517)
|+.|-+.+|+..+..-.. -.+.+.|+.+++.+.. .++-..-.+++.|+.|.|++|... . +...-..+.
T Consensus 322 L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~ 401 (483)
T KOG4341|consen 322 LQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLE 401 (483)
T ss_pred eEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhcccccc
Confidence 777777777653332111 1356677777765532 223333356788888888887433 1 233445677
Q ss_pred CCCEEeccCCCCCCcCC----CCCCCccEEecccccCcC
Q 043008 222 RLECLDLSYCNSLQSLP----ELPLHLEVLLATNCKRLQ 256 (517)
Q Consensus 222 ~L~~L~L~~c~~l~~lp----~l~~~L~~L~~~~c~~l~ 256 (517)
.|..+.|++|+.++.-- ..-.+|+.+++.+|....
T Consensus 402 ~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vt 440 (483)
T KOG4341|consen 402 GLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVT 440 (483)
T ss_pred ccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhh
Confidence 88888888888775421 112466666666665443
No 59
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=96.49 E-value=0.00024 Score=71.40 Aligned_cols=226 Identities=19% Similarity=0.190 Sum_probs=131.8
Q ss_pred CCCCccEEeccCCCCCccc--cccCCCCCCccEEEccCCCCCCCC---CCCCCCCCccEEeeccccCCcc--cCccccCC
Q 043008 12 KPKNLVELNLPYGHKVVQI--WEGKKRAFKLKFINLSHSQCHIKI---PDPSETPNLERIDILNCTNPAC--VLSSITNF 84 (517)
Q Consensus 12 ~~~~L~~L~L~~n~~l~~l--~~~~~~l~~L~~L~Ls~~~~l~~~---p~l~~l~~L~~L~L~~~~~l~~--~p~si~~l 84 (517)
.+.+|+.|+|..+..++.. -.-...+++|++|+++.|.-...- +-..++.+|+.+.+.||..... +-..=+..
T Consensus 188 ~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~ 267 (483)
T KOG4341|consen 188 YCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYC 267 (483)
T ss_pred hcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccC
Confidence 4778888888886456533 123356899999999998644331 1256777788888888854431 11111233
Q ss_pred CCCCEEeccCCcCccccCCC-C--CCCCCcEEEEecCCCCCccC-----CCCCCCcEEEeecccC-cc--cCCcCCCCCC
Q 043008 85 NHLSMLCFRHCKNLRHFPNN-L--HFVCPIIIDFSYCVNLTEFP-----QISGNIIDLILTETAI-EE--VPSSTECLTN 153 (517)
Q Consensus 85 ~~L~~L~L~~~~~l~~lp~~-~--~l~sL~~L~L~~c~~l~~~p-----~~~~~L~~L~L~~~~i-~~--lp~~i~~l~~ 153 (517)
..+..+|+..|..++...-. + .+..|+.|+.++|..+...+ +.-.+|+.|-+.+++- +. +..--.++..
T Consensus 268 ~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~ 347 (483)
T KOG4341|consen 268 LEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPH 347 (483)
T ss_pred hHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChh
Confidence 44555565566444332210 1 46666777777766654332 2234556666655431 11 0111135667
Q ss_pred ccEEEcccCcCCcc--ccccccCCCCCcEEEcCCCC-------CcCCccCCCCCCCCEEEecCCCCCc--chhhhhcCCC
Q 043008 154 LQYLFLCSCKKLKR--VSTSICKFKSLVWLSLNNDL-------TAIPQEIGCLSSLECLNLGGNNFEG--LPASIKQISR 222 (517)
Q Consensus 154 L~~L~l~~~~~l~~--lp~~l~~l~~L~~L~Ls~~l-------~~lp~~l~~l~~L~~L~Ls~n~l~~--lp~~l~~l~~ 222 (517)
|+.+++.+|..... +-..-.+.+.|+.|.++..- ..+...-..+..|+.|.|+++.... .-..+..+++
T Consensus 348 Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~ 427 (483)
T KOG4341|consen 348 LERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRN 427 (483)
T ss_pred hhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcc
Confidence 77777777654322 22223456777777776421 1222234566788899999986652 4456778889
Q ss_pred CCEEeccCCCCCCcC
Q 043008 223 LECLDLSYCNSLQSL 237 (517)
Q Consensus 223 L~~L~L~~c~~l~~l 237 (517)
|+.+++.+|.....-
T Consensus 428 Leri~l~~~q~vtk~ 442 (483)
T KOG4341|consen 428 LERIELIDCQDVTKE 442 (483)
T ss_pred cceeeeechhhhhhh
Confidence 999999998877653
No 60
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.48 E-value=0.00017 Score=61.84 Aligned_cols=86 Identities=24% Similarity=0.358 Sum_probs=57.2
Q ss_pred CCCccEEEcccCcCCccccccc-cCCCCCcEEEcCCC-CCcCCccCCCCCCCCEEEecCCCCCcchhhhhcCCCCCEEec
Q 043008 151 LTNLQYLFLCSCKKLKRVSTSI-CKFKSLVWLSLNND-LTAIPQEIGCLSSLECLNLGGNNFEGLPASIKQISRLECLDL 228 (517)
Q Consensus 151 l~~L~~L~l~~~~~l~~lp~~l-~~l~~L~~L~Ls~~-l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L 228 (517)
...|...++++|.+ +.+|..| .+++.++.|++++| +..+|..+..++.|+.|+++.|.+...|.-+..|.+|..|+.
T Consensus 52 ~~el~~i~ls~N~f-k~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds 130 (177)
T KOG4579|consen 52 GYELTKISLSDNGF-KKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDS 130 (177)
T ss_pred CceEEEEecccchh-hhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcC
Confidence 34455555665533 2333333 34456666666553 577788888888888888888888888888888888888888
Q ss_pred cCCCCCCcCC
Q 043008 229 SYCNSLQSLP 238 (517)
Q Consensus 229 ~~c~~l~~lp 238 (517)
.+ +.+..+|
T Consensus 131 ~~-na~~eid 139 (177)
T KOG4579|consen 131 PE-NARAEID 139 (177)
T ss_pred CC-CccccCc
Confidence 76 4445454
No 61
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.45 E-value=0.00067 Score=65.49 Aligned_cols=57 Identities=18% Similarity=0.252 Sum_probs=34.2
Q ss_pred CCCCCcEEEEecCC---CCCccCCCCCCCcEEEeecccCc--ccCCcCCCCCCccEEEcccC
Q 043008 106 HFVCPIIIDFSYCV---NLTEFPQISGNIIDLILTETAIE--EVPSSTECLTNLQYLFLCSC 162 (517)
Q Consensus 106 ~l~sL~~L~L~~c~---~l~~~p~~~~~L~~L~L~~~~i~--~lp~~i~~l~~L~~L~l~~~ 162 (517)
+++.|++|+++.|+ -++.+|....+|+.|-|.++.+. .....+..++.++.|.++.|
T Consensus 95 ~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N 156 (418)
T KOG2982|consen 95 QLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDN 156 (418)
T ss_pred cCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccc
Confidence 34444444444432 23344544556677777776655 55566777888888888877
No 62
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.30 E-value=0.0021 Score=61.16 Aligned_cols=90 Identities=9% Similarity=0.082 Sum_probs=59.5
Q ss_pred ccccCCCCCCccEEEccCCCCCCCCCCCCCCCCccEEeeccc--cCCcccCccccCCCCCCEEeccCCcCc--cccCCCC
Q 043008 30 IWEGKKRAFKLKFINLSHSQCHIKIPDPSETPNLERIDILNC--TNPACVLSSITNFNHLSMLCFRHCKNL--RHFPNNL 105 (517)
Q Consensus 30 l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~~--~~l~~~p~si~~l~~L~~L~L~~~~~l--~~lp~~~ 105 (517)
+......+..|+.|.+.+.. ++.+..+-.+++|++|.++.| .....++.....+++|++|++++|++- .++++.-
T Consensus 35 ~~gl~d~~~~le~ls~~n~g-ltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~ 113 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVG-LTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLK 113 (260)
T ss_pred cccccccccchhhhhhhccc-eeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhh
Confidence 33334455666667766665 445556778888999999888 555556556666788889988888653 2233322
Q ss_pred CCCCCcEEEEecCCC
Q 043008 106 HFVCPIIIDFSYCVN 120 (517)
Q Consensus 106 ~l~sL~~L~L~~c~~ 120 (517)
.+.+|..|++.+|.-
T Consensus 114 ~l~nL~~Ldl~n~~~ 128 (260)
T KOG2739|consen 114 ELENLKSLDLFNCSV 128 (260)
T ss_pred hhcchhhhhcccCCc
Confidence 667777777777653
No 63
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.24 E-value=0.0033 Score=59.78 Aligned_cols=86 Identities=16% Similarity=0.188 Sum_probs=60.8
Q ss_pred CCCCccEEeccCCCCCccccccCCCCCCccEEEccCC--CCCCCCCC-CCCCCCccEEeeccccCCc-ccCccccCCCCC
Q 043008 12 KPKNLVELNLPYGHKVVQIWEGKKRAFKLKFINLSHS--QCHIKIPD-PSETPNLERIDILNCTNPA-CVLSSITNFNHL 87 (517)
Q Consensus 12 ~~~~L~~L~L~~n~~l~~l~~~~~~l~~L~~L~Ls~~--~~l~~~p~-l~~l~~L~~L~L~~~~~l~-~~p~si~~l~~L 87 (517)
....|+.|++.+. .+..+ ..+..|++|+.|+++.| .....++- ...+|+|++|+|++|++-. .-...+..+.+|
T Consensus 41 ~~~~le~ls~~n~-gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL 118 (260)
T KOG2739|consen 41 EFVELELLSVINV-GLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENL 118 (260)
T ss_pred cccchhhhhhhcc-ceeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcch
Confidence 4456666777766 55554 56678899999999999 55555553 4567999999999996542 112234567788
Q ss_pred CEEeccCCcCcc
Q 043008 88 SMLCFRHCKNLR 99 (517)
Q Consensus 88 ~~L~L~~~~~l~ 99 (517)
..|++.+|....
T Consensus 119 ~~Ldl~n~~~~~ 130 (260)
T KOG2739|consen 119 KSLDLFNCSVTN 130 (260)
T ss_pred hhhhcccCCccc
Confidence 899999986554
No 64
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.05 E-value=0.00095 Score=63.65 Aligned_cols=86 Identities=10% Similarity=0.045 Sum_probs=53.9
Q ss_pred cCCCCCCccEEEccCCCCCCCCC-----CCCCCCCccEEeeccccCCc----ccC-------ccccCCCCCCEEeccCCc
Q 043008 33 GKKRAFKLKFINLSHSQCHIKIP-----DPSETPNLERIDILNCTNPA----CVL-------SSITNFNHLSMLCFRHCK 96 (517)
Q Consensus 33 ~~~~l~~L~~L~Ls~~~~l~~~p-----~l~~l~~L~~L~L~~~~~l~----~~p-------~si~~l~~L~~L~L~~~~ 96 (517)
.+..+..++.+|||+|.+.++-. .+.+-.+|+..++++- .++ +++ ..+-.+++|+..+|++|.
T Consensus 25 el~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~-ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNA 103 (388)
T COG5238 25 ELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDA-FTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNA 103 (388)
T ss_pred HHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhh-hhcccHHHHHHHHHHHHHHHhcCCcceeeeccccc
Confidence 34457788889999988655433 1556678888887763 222 122 344566777777777776
Q ss_pred CccccCCCC-----CCCCCcEEEEecCC
Q 043008 97 NLRHFPNNL-----HFVCPIIIDFSYCV 119 (517)
Q Consensus 97 ~l~~lp~~~-----~l~sL~~L~L~~c~ 119 (517)
.-...|..+ .-+.|++|.+++|.
T Consensus 104 fg~~~~e~L~d~is~~t~l~HL~l~NnG 131 (388)
T COG5238 104 FGSEFPEELGDLISSSTDLVHLKLNNNG 131 (388)
T ss_pred cCcccchHHHHHHhcCCCceeEEeecCC
Confidence 665555543 45666777776653
No 65
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.42 E-value=0.0024 Score=67.90 Aligned_cols=109 Identities=21% Similarity=0.195 Sum_probs=62.1
Q ss_pred CCCccEEeccCCCCCcc--ccccCCCCCCccEEEccCC-CCCCCCC-----CCCCCCCccEEeeccccCCc-ccCcccc-
Q 043008 13 PKNLVELNLPYGHKVVQ--IWEGKKRAFKLKFINLSHS-QCHIKIP-----DPSETPNLERIDILNCTNPA-CVLSSIT- 82 (517)
Q Consensus 13 ~~~L~~L~L~~n~~l~~--l~~~~~~l~~L~~L~Ls~~-~~l~~~p-----~l~~l~~L~~L~L~~~~~l~-~~p~si~- 82 (517)
.++|+.|.+..+..+.. +-......++|+.|+++++ ......+ ....+++|+.|+++.|.... ..-..+.
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 46677777776644544 2234456778888888763 2222222 13456777888887776322 1112222
Q ss_pred CCCCCCEEeccCCcCccccC-CCC--CCCCCcEEEEecCCCC
Q 043008 83 NFNHLSMLCFRHCKNLRHFP-NNL--HFVCPIIIDFSYCVNL 121 (517)
Q Consensus 83 ~l~~L~~L~L~~~~~l~~lp-~~~--~l~sL~~L~L~~c~~l 121 (517)
.+++|+.|.+.+|..++... ..+ .+++|+.|++++|..+
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 26678888777776422111 111 5677888888877765
No 66
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.20 E-value=0.0079 Score=34.62 Aligned_cols=21 Identities=43% Similarity=0.803 Sum_probs=16.0
Q ss_pred CCCEEEecCCCCCcchhhhhc
Q 043008 199 SLECLNLGGNNFEGLPASIKQ 219 (517)
Q Consensus 199 ~L~~L~Ls~n~l~~lp~~l~~ 219 (517)
+|++|+|++|+|+.+|.++++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 478888888888888876554
No 67
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.08 E-value=0.0012 Score=63.17 Aligned_cols=86 Identities=13% Similarity=0.035 Sum_probs=57.9
Q ss_pred CCCccEEeccCCCCCccccccCCCCCCccEEEccCCCCCCCCCCCCCCCCccEEeeccccCCcccC--ccccCCCCCCEE
Q 043008 13 PKNLVELNLPYGHKVVQIWEGKKRAFKLKFINLSHSQCHIKIPDPSETPNLERIDILNCTNPACVL--SSITNFNHLSML 90 (517)
Q Consensus 13 ~~~L~~L~L~~n~~l~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~~~~l~~~p--~si~~l~~L~~L 90 (517)
+.+.+.|+.-+| .+..+ .-...++.|++|.||-|+ ++.+..+..+++|+.|+|..|.+ ..+. .-+.++++|+.|
T Consensus 18 l~~vkKLNcwg~-~L~DI-sic~kMp~lEVLsLSvNk-IssL~pl~rCtrLkElYLRkN~I-~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGC-GLDDI-SICEKMPLLEVLSLSVNK-ISSLAPLQRCTRLKELYLRKNCI-ESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCC-CccHH-HHHHhcccceeEEeeccc-cccchhHHHHHHHHHHHHHhccc-ccHHHHHHHhcCchhhhH
Confidence 456677777777 77665 334678888888888887 45555677888888888888743 2221 235667777777
Q ss_pred eccCCcCccccC
Q 043008 91 CFRHCKNLRHFP 102 (517)
Q Consensus 91 ~L~~~~~l~~lp 102 (517)
.|..|.=...-+
T Consensus 94 WL~ENPCc~~ag 105 (388)
T KOG2123|consen 94 WLDENPCCGEAG 105 (388)
T ss_pred hhccCCcccccc
Confidence 777765444433
No 68
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.87 E-value=0.088 Score=44.92 Aligned_cols=104 Identities=19% Similarity=0.193 Sum_probs=55.1
Q ss_pred CCCCC-C-CCCCccEEeccCCCCCcccc-ccCCCCCCccEEEccCCCCCCCCCC--CCCCCCccEEeeccccCCcccCcc
Q 043008 6 TLPSN-F-KPKNLVELNLPYGHKVVQIW-EGKKRAFKLKFINLSHSQCHIKIPD--PSETPNLERIDILNCTNPACVLSS 80 (517)
Q Consensus 6 ~lP~~-f-~~~~L~~L~L~~n~~l~~l~-~~~~~l~~L~~L~Ls~~~~l~~~p~--l~~l~~L~~L~L~~~~~l~~~p~s 80 (517)
++|.. | ++++|+.+.+.. .++.++ ..+..+.+|+.+++.++ +..+++ |..+++|+.+.+.++ ....-...
T Consensus 2 ~i~~~~F~~~~~l~~i~~~~--~~~~I~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~ 76 (129)
T PF13306_consen 2 SIGNNAFYNCSNLESITFPN--TIKKIGENAFSNCTSLKSINFPNN--LTSIGDNAFSNCKSLESITFPNN-LKSIGDNA 76 (129)
T ss_dssp EE-TTTTTT-TT--EEEETS--T--EE-TTTTTT-TT-SEEEESST--TSCE-TTTTTT-TT-EEEEETST-T-EE-TTT
T ss_pred EECHHHHhCCCCCCEEEECC--CeeEeChhhccccccccccccccc--ccccceeeeeccccccccccccc-cccccccc
Confidence 34544 5 677899999874 577774 55777888999998875 555553 788888999998652 22233345
Q ss_pred ccCCCCCCEEeccCCcCccccCCCC--CCCCCcEEEEec
Q 043008 81 ITNFNHLSMLCFRHCKNLRHFPNNL--HFVCPIIIDFSY 117 (517)
Q Consensus 81 i~~l~~L~~L~L~~~~~l~~lp~~~--~l~sL~~L~L~~ 117 (517)
+..+++|+.+++..+ +..++... +. .|+.+.+.+
T Consensus 77 F~~~~~l~~i~~~~~--~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 77 FSNCTNLKNIDIPSN--ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp TTT-TTECEEEETTT---BEEHTTTTTT--T--EEE-TT
T ss_pred ccccccccccccCcc--ccEEchhhhcCC-CceEEEECC
Confidence 666888888888653 33443333 44 666666543
No 69
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.62 E-value=0.0015 Score=62.52 Aligned_cols=77 Identities=17% Similarity=0.090 Sum_probs=60.0
Q ss_pred CCCCccEEeccCCCCCccccccCCCCCCccEEEccCCCCCCCCC---CCCCCCCccEEeeccccCCcccCc-----cccC
Q 043008 12 KPKNLVELNLPYGHKVVQIWEGKKRAFKLKFINLSHSQCHIKIP---DPSETPNLERIDILNCTNPACVLS-----SITN 83 (517)
Q Consensus 12 ~~~~L~~L~L~~n~~l~~l~~~~~~l~~L~~L~Ls~~~~l~~~p---~l~~l~~L~~L~L~~~~~l~~~p~-----si~~ 83 (517)
.++.|++|.|+-| +|..+ +.+..+.+|++|.|+.|.+ ..+. -+.++|+|+.|.|..|.-.+.-+. .+.-
T Consensus 39 kMp~lEVLsLSvN-kIssL-~pl~rCtrLkElYLRkN~I-~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~ 115 (388)
T KOG2123|consen 39 KMPLLEVLSLSVN-KISSL-APLQRCTRLKELYLRKNCI-ESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRV 115 (388)
T ss_pred hcccceeEEeecc-ccccc-hhHHHHHHHHHHHHHhccc-ccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHHH
Confidence 6899999999999 99988 6788999999999999974 3333 268999999999999876554443 2445
Q ss_pred CCCCCEEe
Q 043008 84 FNHLSMLC 91 (517)
Q Consensus 84 l~~L~~L~ 91 (517)
|++|+.||
T Consensus 116 LPnLkKLD 123 (388)
T KOG2123|consen 116 LPNLKKLD 123 (388)
T ss_pred cccchhcc
Confidence 66666664
No 70
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.42 E-value=0.18 Score=42.92 Aligned_cols=13 Identities=31% Similarity=0.232 Sum_probs=4.3
Q ss_pred CCCCCCccEEeec
Q 043008 57 PSETPNLERIDIL 69 (517)
Q Consensus 57 l~~l~~L~~L~L~ 69 (517)
|.++++|+.+.+.
T Consensus 8 F~~~~~l~~i~~~ 20 (129)
T PF13306_consen 8 FYNCSNLESITFP 20 (129)
T ss_dssp TTT-TT--EEEET
T ss_pred HhCCCCCCEEEEC
Confidence 3344444444443
No 71
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.34 E-value=0.032 Score=29.86 Aligned_cols=17 Identities=35% Similarity=0.671 Sum_probs=8.8
Q ss_pred CCCCEEEecCCCCCcch
Q 043008 198 SSLECLNLGGNNFEGLP 214 (517)
Q Consensus 198 ~~L~~L~Ls~n~l~~lp 214 (517)
++|+.|+|++|+++++|
T Consensus 1 ~~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNRLTSLP 17 (17)
T ss_dssp TT-SEEEETSS--SSE-
T ss_pred CccCEEECCCCCCCCCc
Confidence 35677777777776665
No 72
>PF07725 LRR_3: Leucine Rich Repeat; InterPro: IPR011713 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by the IPR001611 from INTERPRO model.
Probab=93.69 E-value=0.043 Score=30.62 Aligned_cols=20 Identities=65% Similarity=1.240 Sum_probs=17.9
Q ss_pred CccEEeccCCCCCccccccCC
Q 043008 15 NLVELNLPYGHKVVQIWEGKK 35 (517)
Q Consensus 15 ~L~~L~L~~n~~l~~l~~~~~ 35 (517)
+|++|+|+++ +++++|++.+
T Consensus 1 ~LVeL~m~~S-~lekLW~G~k 20 (20)
T PF07725_consen 1 NLVELNMPYS-KLEKLWEGVK 20 (20)
T ss_pred CcEEEECCCC-ChHHhcCccC
Confidence 5899999999 9999999864
No 73
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=93.66 E-value=0.0061 Score=64.72 Aligned_cols=35 Identities=17% Similarity=0.244 Sum_probs=17.7
Q ss_pred CCCccEEeeccccCCcc--cCccccCCCCCCEEeccC
Q 043008 60 TPNLERIDILNCTNPAC--VLSSITNFNHLSMLCFRH 94 (517)
Q Consensus 60 l~~L~~L~L~~~~~l~~--~p~si~~l~~L~~L~L~~ 94 (517)
.++|+.|.+.+|..+.. +-......++|+.|++++
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 223 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSG 223 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccC
Confidence 45555555555544443 223344455555555554
No 74
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=93.05 E-value=0.055 Score=31.07 Aligned_cols=21 Identities=24% Similarity=0.156 Sum_probs=12.7
Q ss_pred CccEEeccCCCCCccccccCCC
Q 043008 15 NLVELNLPYGHKVVQIWEGKKR 36 (517)
Q Consensus 15 ~L~~L~L~~n~~l~~l~~~~~~ 36 (517)
+|++|+|++| .++.+|.++++
T Consensus 1 ~L~~Ldls~n-~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGN-NLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSS-EESEEGTTTTT
T ss_pred CccEEECCCC-cCEeCChhhcC
Confidence 4566666666 66666655543
No 75
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=89.99 E-value=0.28 Score=29.24 Aligned_cols=21 Identities=33% Similarity=0.577 Sum_probs=16.7
Q ss_pred CCCCCEEEecCCCCCcchhhh
Q 043008 197 LSSLECLNLGGNNFEGLPASI 217 (517)
Q Consensus 197 l~~L~~L~Ls~n~l~~lp~~l 217 (517)
+++|+.|+|++|+|+.+|...
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 467888888888888888654
No 76
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=89.99 E-value=0.28 Score=29.24 Aligned_cols=21 Identities=33% Similarity=0.577 Sum_probs=16.7
Q ss_pred CCCCCEEEecCCCCCcchhhh
Q 043008 197 LSSLECLNLGGNNFEGLPASI 217 (517)
Q Consensus 197 l~~L~~L~Ls~n~l~~lp~~l 217 (517)
+++|+.|+|++|+|+.+|...
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 467888888888888888654
No 77
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.15 E-value=0.34 Score=44.73 Aligned_cols=34 Identities=26% Similarity=0.273 Sum_probs=20.6
Q ss_pred CCCCCEEEecCC-CCCc-chhhhhcCCCCCEEeccC
Q 043008 197 LSSLECLNLGGN-NFEG-LPASIKQISRLECLDLSY 230 (517)
Q Consensus 197 l~~L~~L~Ls~n-~l~~-lp~~l~~l~~L~~L~L~~ 230 (517)
.++|+.|+|++| +|++ =-.++..+++|+.|.|.+
T Consensus 150 ~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~ 185 (221)
T KOG3864|consen 150 APSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYD 185 (221)
T ss_pred ccchheeeccCCCeechhHHHHHHHhhhhHHHHhcC
Confidence 356777777766 5553 123566666666666664
No 78
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=80.40 E-value=0.057 Score=50.72 Aligned_cols=80 Identities=16% Similarity=0.075 Sum_probs=35.4
Q ss_pred CCCccEEeccCCCCCccccccCCCCCCccEEEccCCCCCCCCC-CCCCCCCccEEeeccccCCcccCccccCCCCCCEEe
Q 043008 13 PKNLVELNLPYGHKVVQIWEGKKRAFKLKFINLSHSQCHIKIP-DPSETPNLERIDILNCTNPACVLSSITNFNHLSMLC 91 (517)
Q Consensus 13 ~~~L~~L~L~~n~~l~~l~~~~~~l~~L~~L~Ls~~~~l~~~p-~l~~l~~L~~L~L~~~~~l~~~p~si~~l~~L~~L~ 91 (517)
.+..+.||++.| .+..+-..+..+..|..||++.|. ....| ++.....++.+++..| .....|.+++.++.+++++
T Consensus 41 ~kr~tvld~~s~-r~vn~~~n~s~~t~~~rl~~sknq-~~~~~~d~~q~~e~~~~~~~~n-~~~~~p~s~~k~~~~k~~e 117 (326)
T KOG0473|consen 41 FKRVTVLDLSSN-RLVNLGKNFSILTRLVRLDLSKNQ-IKFLPKDAKQQRETVNAASHKN-NHSQQPKSQKKEPHPKKNE 117 (326)
T ss_pred cceeeeehhhhh-HHHhhccchHHHHHHHHHhccHhh-HhhChhhHHHHHHHHHHHhhcc-chhhCCccccccCCcchhh
Confidence 344444444444 444443444444444444444444 22333 3444444444444433 3344444455555555444
Q ss_pred ccCC
Q 043008 92 FRHC 95 (517)
Q Consensus 92 L~~~ 95 (517)
+.++
T Consensus 118 ~k~~ 121 (326)
T KOG0473|consen 118 QKKT 121 (326)
T ss_pred hccC
Confidence 4443
No 79
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.03 E-value=0.19 Score=46.36 Aligned_cols=60 Identities=17% Similarity=0.227 Sum_probs=30.5
Q ss_pred ccEEeeccccCCcccCccccCCCCCCEEeccCCcCccccCCCC---CCCCCcEEEEecCCCCC
Q 043008 63 LERIDILNCTNPACVLSSITNFNHLSMLCFRHCKNLRHFPNNL---HFVCPIIIDFSYCVNLT 122 (517)
Q Consensus 63 L~~L~L~~~~~l~~~p~si~~l~~L~~L~L~~~~~l~~lp~~~---~l~sL~~L~L~~c~~l~ 122 (517)
++.++.+++.+..+--..+.+++.++.|.+.+|+.....--.. -.++|+.|++++|..++
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT 165 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRIT 165 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeec
Confidence 4555555554444444445555555556666555543321111 34566666666665544
No 80
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=78.31 E-value=1.2 Score=26.63 Aligned_cols=18 Identities=39% Similarity=0.623 Sum_probs=12.2
Q ss_pred CCCCEEEecCCCCCcchh
Q 043008 198 SSLECLNLGGNNFEGLPA 215 (517)
Q Consensus 198 ~~L~~L~Ls~n~l~~lp~ 215 (517)
++|+.|++++|+++++|+
T Consensus 2 ~~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLTSLPE 19 (26)
T ss_pred cccceeecCCCccccCcc
Confidence 356777777777777764
No 81
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=77.29 E-value=1.6 Score=25.80 Aligned_cols=18 Identities=28% Similarity=0.338 Sum_probs=9.6
Q ss_pred CCccEEeccCCCCCccccc
Q 043008 14 KNLVELNLPYGHKVVQIWE 32 (517)
Q Consensus 14 ~~L~~L~L~~n~~l~~l~~ 32 (517)
++|+.|+|.+| .++.+|.
T Consensus 2 ~~L~~L~L~~N-~l~~lp~ 19 (26)
T smart00370 2 PNLRELDLSNN-QLSSLPP 19 (26)
T ss_pred CCCCEEECCCC-cCCcCCH
Confidence 34555555555 5555543
No 82
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=77.29 E-value=1.6 Score=25.80 Aligned_cols=18 Identities=28% Similarity=0.338 Sum_probs=9.6
Q ss_pred CCccEEeccCCCCCccccc
Q 043008 14 KNLVELNLPYGHKVVQIWE 32 (517)
Q Consensus 14 ~~L~~L~L~~n~~l~~l~~ 32 (517)
++|+.|+|.+| .++.+|.
T Consensus 2 ~~L~~L~L~~N-~l~~lp~ 19 (26)
T smart00369 2 PNLRELDLSNN-QLSSLPP 19 (26)
T ss_pred CCCCEEECCCC-cCCcCCH
Confidence 34555555555 5555543
No 83
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=68.86 E-value=0.047 Score=57.95 Aligned_cols=82 Identities=24% Similarity=0.287 Sum_probs=43.0
Q ss_pred CCCCccEEEcccCcCCcc----ccccccCCCC-CcEEEcCCCC------CcCCccCCCC-CCCCEEEecCCCCCc-----
Q 043008 150 CLTNLQYLFLCSCKKLKR----VSTSICKFKS-LVWLSLNNDL------TAIPQEIGCL-SSLECLNLGGNNFEG----- 212 (517)
Q Consensus 150 ~l~~L~~L~l~~~~~l~~----lp~~l~~l~~-L~~L~Ls~~l------~~lp~~l~~l-~~L~~L~Ls~n~l~~----- 212 (517)
...++++|.+.+|..... +...+...+. +..|++..|. ..+...+..+ ..++.++++.|.|+.
T Consensus 202 ~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~ 281 (478)
T KOG4308|consen 202 PLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRD 281 (478)
T ss_pred ccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHH
Confidence 356666777766654321 1122233333 4445554332 1222333344 566777777777663
Q ss_pred chhhhhcCCCCCEEeccCC
Q 043008 213 LPASIKQISRLECLDLSYC 231 (517)
Q Consensus 213 lp~~l~~l~~L~~L~L~~c 231 (517)
+...+..++.++.|.++++
T Consensus 282 L~~~l~~~~~l~~l~l~~n 300 (478)
T KOG4308|consen 282 LAEVLVSCRQLEELSLSNN 300 (478)
T ss_pred HHHHHhhhHHHHHhhcccC
Confidence 4556666667777777753
No 84
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=67.49 E-value=4.2 Score=24.09 Aligned_cols=17 Identities=35% Similarity=0.552 Sum_probs=12.3
Q ss_pred CCCCCEEeccCCCCCCc
Q 043008 220 ISRLECLDLSYCNSLQS 236 (517)
Q Consensus 220 l~~L~~L~L~~c~~l~~ 236 (517)
+++|+.|+|++|..++.
T Consensus 1 c~~L~~L~l~~C~~itD 17 (26)
T smart00367 1 CPNLRELDLSGCTNITD 17 (26)
T ss_pred CCCCCEeCCCCCCCcCH
Confidence 46778888888877654
No 85
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=66.40 E-value=4.6 Score=24.22 Aligned_cols=16 Identities=31% Similarity=0.524 Sum_probs=11.2
Q ss_pred CCCCEEEecCCCCCcc
Q 043008 198 SSLECLNLGGNNFEGL 213 (517)
Q Consensus 198 ~~L~~L~Ls~n~l~~l 213 (517)
.+|+.|+|++|+|+.+
T Consensus 2 ~~L~~L~L~~NkI~~I 17 (26)
T smart00365 2 TNLEELDLSQNKIKKI 17 (26)
T ss_pred CccCEEECCCCcccee
Confidence 5677777777777654
No 86
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=58.75 E-value=3.5 Score=43.77 Aligned_cols=65 Identities=12% Similarity=0.087 Sum_probs=36.4
Q ss_pred CCCCCccEEEccCCCCCCCCCCC----CCCCCccEEeeccccCCcccCccccC--CCCCCEEeccCCcCccc
Q 043008 35 KRAFKLKFINLSHSQCHIKIPDP----SETPNLERIDILNCTNPACVLSSITN--FNHLSMLCFRHCKNLRH 100 (517)
Q Consensus 35 ~~l~~L~~L~Ls~~~~l~~~p~l----~~l~~L~~L~L~~~~~l~~~p~si~~--l~~L~~L~L~~~~~l~~ 100 (517)
.+.+.+..++|++|+ +..+..+ ...|+|+.|+|++|.+......++.. ...|++|-+.+|+..+.
T Consensus 215 ~n~p~i~sl~lsnNr-L~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~t 285 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNR-LYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTT 285 (585)
T ss_pred cCCcceeeeecccch-hhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccc
Confidence 355666677777776 3333322 34677777777776333322233332 23467777777766554
No 87
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=58.20 E-value=4.8 Score=23.24 Aligned_cols=14 Identities=36% Similarity=0.591 Sum_probs=8.4
Q ss_pred CCCCEEEecCCCCC
Q 043008 198 SSLECLNLGGNNFE 211 (517)
Q Consensus 198 ~~L~~L~Ls~n~l~ 211 (517)
++|++|+|++|+|+
T Consensus 2 ~~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 2 PNLETLDLSNNQIT 15 (24)
T ss_dssp TT-SEEE-TSSBEH
T ss_pred CCCCEEEccCCcCC
Confidence 56777777777665
No 88
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=57.70 E-value=0.27 Score=46.31 Aligned_cols=82 Identities=16% Similarity=0.145 Sum_probs=50.3
Q ss_pred CCCCccEEEcccCcCCccccccccCCCCCcEEEcCCC-CCcCCccCCCCCCCCEEEecCCCCCcchhhhhcCCCCCEEec
Q 043008 150 CLTNLQYLFLCSCKKLKRVSTSICKFKSLVWLSLNND-LTAIPQEIGCLSSLECLNLGGNNFEGLPASIKQISRLECLDL 228 (517)
Q Consensus 150 ~l~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~Ls~~-l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L 228 (517)
...+.+.||++.|.+ ..+-..+..++.|..|+++.+ +..+|.+++.+..+..+++..|+.+.+|.+.+.+++++++++
T Consensus 40 ~~kr~tvld~~s~r~-vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~ 118 (326)
T KOG0473|consen 40 SFKRVTVLDLSSNRL-VNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQ 118 (326)
T ss_pred ccceeeeehhhhhHH-HhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhhh
Confidence 344555555555432 222233444455555555443 355666777777777777777888888888888888888877
Q ss_pred cCCC
Q 043008 229 SYCN 232 (517)
Q Consensus 229 ~~c~ 232 (517)
..+.
T Consensus 119 k~~~ 122 (326)
T KOG0473|consen 119 KKTE 122 (326)
T ss_pred ccCc
Confidence 7644
No 89
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=55.00 E-value=0.16 Score=54.08 Aligned_cols=81 Identities=15% Similarity=0.149 Sum_probs=42.1
Q ss_pred ccEEeccCCCCCcc-----ccccCCCCCCccEEEccCCCCCCCCC-----CCCCC-CCccEEeeccccCCcc----cCcc
Q 043008 16 LVELNLPYGHKVVQ-----IWEGKKRAFKLKFINLSHSQCHIKIP-----DPSET-PNLERIDILNCTNPAC----VLSS 80 (517)
Q Consensus 16 L~~L~L~~n~~l~~-----l~~~~~~l~~L~~L~Ls~~~~l~~~p-----~l~~l-~~L~~L~L~~~~~l~~----~p~s 80 (517)
+..|.|.+| .++. +-.++...+.|..|++++|.+...-- .+... ..|++|++..|..... +...
T Consensus 89 l~~L~L~~~-~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~ 167 (478)
T KOG4308|consen 89 LLHLSLANN-RLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAV 167 (478)
T ss_pred HHHhhhhhC-ccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHH
Confidence 556666666 4442 23445566677777777766431100 11221 4456666666644332 3344
Q ss_pred ccCCCCCCEEeccCCcC
Q 043008 81 ITNFNHLSMLCFRHCKN 97 (517)
Q Consensus 81 i~~l~~L~~L~L~~~~~ 97 (517)
+.....|+.++++.|..
T Consensus 168 L~~~~~l~~l~l~~n~l 184 (478)
T KOG4308|consen 168 LEKNEHLTELDLSLNGL 184 (478)
T ss_pred HhcccchhHHHHHhccc
Confidence 45556666666666654
No 90
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=44.44 E-value=17 Score=21.93 Aligned_cols=14 Identities=36% Similarity=0.496 Sum_probs=11.0
Q ss_pred CCCCEEEecCCCCC
Q 043008 198 SSLECLNLGGNNFE 211 (517)
Q Consensus 198 ~~L~~L~Ls~n~l~ 211 (517)
++|++|+|++|.|.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 46888888888775
No 91
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=41.31 E-value=13 Score=39.67 Aligned_cols=68 Identities=13% Similarity=-0.022 Sum_probs=42.6
Q ss_pred CCCCCccEEeeccccCCc--ccCccccCCCCCCEEeccCCcCccccCCCC---CCCCCcEEEEecCCCCCccC
Q 043008 58 SETPNLERIDILNCTNPA--CVLSSITNFNHLSMLCFRHCKNLRHFPNNL---HFVCPIIIDFSYCVNLTEFP 125 (517)
Q Consensus 58 ~~l~~L~~L~L~~~~~l~--~~p~si~~l~~L~~L~L~~~~~l~~lp~~~---~l~sL~~L~L~~c~~l~~~p 125 (517)
.+.+.+..++|++|.... .+.+--..-++|+.|+|++|.+.......+ +...|++|-+.||..-+.+-
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~tf~ 287 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTTFS 287 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccchh
Confidence 356778888888875322 222223346789999999984333322223 56678888899887666553
No 92
>PF11763 DIPSY: Cell-wall adhesin ligand-binding C-terminal; InterPro: IPR021746 The DIPSY domain is characterised by the distinctive D*I*PSY motif at the very C terminus of yeast cell-wall glycoproteins. It appears not to be conserved in any other species, however. In fungi, cell adhesion is required for flocculation, mating and virulence, and is mediated by covalently bound cell wall proteins termed adhesins. Map4, an adhesin required for mating in Schizosaccharomyces pombe, is N-glycosylated and O-glycosylated, and is an endogenous substrate for the mannosyl transferase Oma4p. Map4 has a modular structure with an N-terminal signal peptide, a serine and threonine (S/T)-rich domain that includes nine repeats of 36 amino acids (rich in serine and threonine residues, but lacking glutamines), and a C-terminal DIPSY domain with no glycosyl-phosphatidyl inositol (GPI)-anchor signal. The N-terminal S/T-rich regions, are required for cell wall attachment, but the C-terminal DIPSY domain is required for agglutination and mating in liquid and solid media [].
Probab=24.40 E-value=40 Score=28.15 Aligned_cols=14 Identities=43% Similarity=0.982 Sum_probs=11.8
Q ss_pred eeeEEeeeeeeeEe
Q 043008 467 YYVVKCCEVCPFWR 480 (517)
Q Consensus 467 ~~~v~~Cgv~~~~~ 480 (517)
.-++.+|||+|+|+
T Consensus 38 ~RI~TCc~vrP~Y~ 51 (123)
T PF11763_consen 38 KRIVTCCCVRPIYR 51 (123)
T ss_pred ceEEEecccccEEE
Confidence 34788999999996
No 93
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=21.76 E-value=49 Score=42.34 Aligned_cols=39 Identities=15% Similarity=0.280 Sum_probs=0.0
Q ss_pred EecCCCCCcch-hhhhcCCCCCEEeccCCCCCCcCCCCCCCccEEecccccCcCcCCCCCchhhhcchhhHHhhhcCCCC
Q 043008 204 NLGGNNFEGLP-ASIKQISRLECLDLSYCNSLQSLPELPLHLEVLLATNCKRLQSLPEIPSCLEELDASVLEKLSKHSFG 282 (517)
Q Consensus 204 ~Ls~n~l~~lp-~~l~~l~~L~~L~L~~c~~l~~lp~l~~~L~~L~~~~c~~l~~l~~~~~~L~~L~~l~~~~Ls~n~~~ 282 (517)
||++|+|+.|| ..+..+++|+.|+|++ |||.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsg------------------------------------------------NPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSG------------------------------------------------NPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeC------------------------------------------------Cccc
Q ss_pred Ccceeeee
Q 043008 283 EEYRIWSI 290 (517)
Q Consensus 283 ~~~~l~~l 290 (517)
|.|.+.++
T Consensus 33 CDC~L~WL 40 (2740)
T TIGR00864 33 CDCGLARL 40 (2740)
T ss_pred cccccHHH
Done!