Query 043008
Match_columns 517
No_of_seqs 536 out of 3665
Neff 8.6
Searched_HMMs 29240
Date Mon Mar 25 20:52:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043008.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043008hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3v47_A TOLL-like receptor 5B a 99.9 6E-26 2.1E-30 238.4 22.0 277 3-285 21-411 (455)
2 2id5_A Lingo-1, leucine rich r 99.9 2E-25 6.7E-30 236.2 22.0 273 4-282 23-309 (477)
3 2id5_A Lingo-1, leucine rich r 99.9 3.5E-25 1.2E-29 234.3 22.7 280 3-288 43-339 (477)
4 3t6q_A CD180 antigen; protein- 99.9 1.7E-25 5.8E-30 243.6 20.8 281 4-286 266-564 (606)
5 3rgz_A Protein brassinosteroid 99.9 2.6E-26 9E-31 257.1 13.8 248 37-284 393-719 (768)
6 4eco_A Uncharacterized protein 99.9 5.1E-26 1.8E-30 249.3 14.9 280 6-300 197-538 (636)
7 4fcg_A Uncharacterized protein 99.9 5E-25 1.7E-29 222.0 19.2 214 13-230 80-310 (328)
8 3rgz_A Protein brassinosteroid 99.9 6.9E-26 2.3E-30 253.7 11.6 268 12-285 245-554 (768)
9 1xku_A Decorin; proteoglycan, 99.9 6.1E-24 2.1E-28 213.8 24.1 228 3-238 42-279 (330)
10 2ft3_A Biglycan; proteoglycan, 99.9 2.2E-24 7.6E-29 217.3 20.7 227 4-238 45-280 (332)
11 1ogq_A PGIP-2, polygalacturona 99.9 2.5E-25 8.6E-30 222.6 13.5 225 14-240 50-287 (313)
12 4ecn_A Leucine-rich repeat pro 99.9 4E-25 1.4E-29 248.1 15.7 278 7-300 440-778 (876)
13 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 9.8E-24 3.4E-28 227.9 24.0 271 3-282 42-486 (562)
14 4fmz_A Internalin; leucine ric 99.9 1.3E-23 4.5E-28 212.6 22.7 270 2-285 54-327 (347)
15 2z7x_B TOLL-like receptor 1, v 99.9 4E-24 1.4E-28 228.5 19.7 130 150-283 322-458 (520)
16 3o6n_A APL1; leucine-rich repe 99.9 9.9E-24 3.4E-28 217.3 21.8 268 4-284 57-354 (390)
17 3vq2_A TLR4, TOLL-like recepto 99.9 8.8E-24 3E-28 230.0 21.1 133 147-283 371-511 (606)
18 4eco_A Uncharacterized protein 99.9 1.2E-24 4E-29 238.6 14.0 271 5-282 263-579 (636)
19 4fcg_A Uncharacterized protein 99.9 8.5E-24 2.9E-28 213.0 18.8 207 37-247 80-303 (328)
20 3oja_B Anopheles plasmodium-re 99.9 1.2E-23 4.2E-28 228.8 21.5 268 4-284 63-360 (597)
21 4ecn_A Leucine-rich repeat pro 99.9 7.9E-24 2.7E-28 237.6 20.1 271 4-282 504-819 (876)
22 2z81_A CD282 antigen, TOLL-lik 99.9 9.5E-24 3.2E-28 227.0 19.5 133 150-284 332-488 (549)
23 3zyi_A Leucine-rich repeat-con 99.9 4.5E-23 1.5E-27 216.8 23.7 227 3-232 65-301 (452)
24 3v47_A TOLL-like receptor 5B a 99.9 3.4E-23 1.2E-27 217.4 22.8 248 4-253 42-406 (455)
25 3zyj_A Leucine-rich repeat-con 99.9 5.7E-23 2E-27 215.2 23.0 227 3-232 54-290 (440)
26 3vq2_A TLR4, TOLL-like recepto 99.9 7.1E-24 2.4E-28 230.8 15.9 267 12-289 283-565 (606)
27 4fmz_A Internalin; leucine ric 99.9 3.6E-23 1.2E-27 209.4 19.9 264 2-282 76-346 (347)
28 3t6q_A CD180 antigen; protein- 99.9 4.4E-23 1.5E-27 224.5 21.2 152 129-282 278-438 (606)
29 1ogq_A PGIP-2, polygalacturona 99.9 3.1E-24 1E-28 214.7 10.4 239 38-281 50-303 (313)
30 2z7x_B TOLL-like receptor 1, v 99.9 2.6E-23 9E-28 222.1 17.9 154 126-286 321-485 (520)
31 4g8a_A TOLL-like receptor 4; l 99.9 9.1E-23 3.1E-27 222.3 21.9 96 190-289 486-587 (635)
32 3bz5_A Internalin-J, INLJ; leu 99.9 1.8E-22 6E-27 212.5 23.1 270 3-300 53-341 (457)
33 2z63_A TOLL-like receptor 4, v 99.9 5.2E-23 1.8E-27 222.0 18.7 130 149-282 370-507 (570)
34 3j0a_A TOLL-like receptor 5; m 99.9 2.4E-22 8.2E-27 227.2 24.3 274 3-283 15-376 (844)
35 3g06_A SSPH2 (leucine-rich rep 99.9 8.7E-22 3E-26 214.0 27.1 247 2-282 50-297 (622)
36 2z81_A CD282 antigen, TOLL-lik 99.9 4.7E-22 1.6E-26 213.7 24.6 146 3-150 16-170 (549)
37 3j0a_A TOLL-like receptor 5; m 99.9 1.1E-22 3.9E-27 229.9 20.4 260 17-283 7-352 (844)
38 3o6n_A APL1; leucine-rich repe 99.9 1.2E-22 4E-27 209.3 18.6 263 10-283 41-332 (390)
39 1xku_A Decorin; proteoglycan, 99.9 8.5E-22 2.9E-26 198.2 23.1 226 2-232 62-304 (330)
40 3oja_B Anopheles plasmodium-re 99.9 4.7E-23 1.6E-27 224.2 14.9 263 10-283 47-338 (597)
41 2z80_A TOLL-like receptor 2, v 99.9 1.7E-22 5.9E-27 205.2 17.6 246 3-253 42-312 (353)
42 2z66_A Variable lymphocyte rec 99.9 1.8E-22 6.3E-27 200.7 17.3 206 4-232 19-234 (306)
43 1ziw_A TOLL-like receptor 3; i 99.9 4.5E-22 1.6E-26 219.5 21.8 271 12-287 327-627 (680)
44 1o6v_A Internalin A; bacterial 99.9 1.6E-21 5.6E-26 205.6 23.3 264 2-283 56-345 (466)
45 1ziw_A TOLL-like receptor 3; i 99.9 6.4E-22 2.2E-26 218.3 20.9 246 3-251 15-305 (680)
46 1o6v_A Internalin A; bacterial 99.9 1.3E-21 4.3E-26 206.5 22.1 254 12-284 44-324 (466)
47 1jl5_A Outer protein YOPM; leu 99.9 4.5E-21 1.5E-25 201.6 26.0 246 14-283 131-410 (454)
48 2ft3_A Biglycan; proteoglycan, 99.9 8.7E-22 3E-26 198.3 19.5 225 3-233 65-306 (332)
49 3zyi_A Leucine-rich repeat-con 99.9 1E-21 3.6E-26 206.3 20.4 245 16-289 56-310 (452)
50 3zyj_A Leucine-rich repeat-con 99.9 1.1E-21 3.9E-26 205.3 19.9 246 15-289 44-299 (440)
51 3bz5_A Internalin-J, INLJ; leu 99.9 3E-21 1E-25 203.1 23.0 262 3-283 75-353 (457)
52 2z63_A TOLL-like receptor 4, v 99.9 9.3E-22 3.2E-26 212.2 18.7 179 3-184 18-208 (570)
53 1ozn_A Reticulon 4 receptor; N 99.9 5.6E-21 1.9E-25 188.1 22.4 214 17-233 14-237 (285)
54 1ozn_A Reticulon 4 receptor; N 99.9 1.4E-21 5E-26 192.3 16.7 208 3-212 22-239 (285)
55 1jl5_A Outer protein YOPM; leu 99.9 4.1E-20 1.4E-24 194.3 26.1 222 38-283 131-371 (454)
56 3o53_A Protein LRIM1, AGAP0063 99.9 3E-22 1E-26 200.5 9.1 253 14-277 10-270 (317)
57 2z66_A Variable lymphocyte rec 99.9 2.2E-21 7.4E-26 193.0 13.6 241 17-287 10-266 (306)
58 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1.8E-20 6.2E-25 202.3 21.7 272 3-287 87-515 (562)
59 3oja_A Leucine-rich immune mol 99.9 2.5E-21 8.5E-26 205.4 13.8 240 36-285 32-285 (487)
60 2z80_A TOLL-like receptor 2, v 99.8 6.7E-21 2.3E-25 193.5 15.8 266 11-285 28-317 (353)
61 2z62_A TOLL-like receptor 4, v 99.8 3.8E-20 1.3E-24 181.2 18.8 207 4-233 19-236 (276)
62 4ay9_X Follicle-stimulating ho 99.8 5.4E-20 1.9E-24 186.7 19.9 223 3-250 20-254 (350)
63 1wwl_A Monocyte differentiatio 99.8 2.4E-21 8.1E-26 193.5 8.2 191 36-230 93-305 (312)
64 3g06_A SSPH2 (leucine-rich rep 99.8 2.3E-19 7.8E-24 195.0 23.9 234 14-282 40-274 (622)
65 2xwt_C Thyrotropin receptor; s 99.8 1E-19 3.5E-24 174.4 17.5 190 39-232 32-237 (239)
66 3o53_A Protein LRIM1, AGAP0063 99.8 7.4E-21 2.5E-25 190.4 6.8 219 12-241 32-258 (317)
67 3oja_A Leucine-rich immune mol 99.8 1.7E-20 5.7E-25 199.0 8.9 220 12-242 32-259 (487)
68 1wwl_A Monocyte differentiatio 99.8 7.1E-21 2.4E-25 190.1 4.1 238 35-283 40-310 (312)
69 4g8a_A TOLL-like receptor 4; l 99.8 1.6E-18 5.3E-23 188.8 22.9 100 153-252 470-577 (635)
70 1p9a_G Platelet glycoprotein I 99.8 1.5E-18 5.1E-23 171.5 19.3 194 12-232 8-206 (290)
71 2o6q_A Variable lymphocyte rec 99.8 6.8E-18 2.3E-22 164.8 22.1 195 14-232 16-216 (270)
72 2z62_A TOLL-like receptor 4, v 99.8 1.1E-18 3.8E-23 170.7 15.5 220 18-285 11-240 (276)
73 4glp_A Monocyte differentiatio 99.8 3.6E-19 1.2E-23 177.5 12.0 215 14-232 64-305 (310)
74 3rfs_A Internalin B, repeat mo 99.8 7.5E-19 2.6E-23 171.8 13.9 220 16-246 21-247 (272)
75 2xwt_C Thyrotropin receptor; s 99.8 6.7E-18 2.3E-22 161.6 18.6 200 51-254 23-238 (239)
76 3rfs_A Internalin B, repeat mo 99.8 1.3E-18 4.4E-23 170.1 12.7 172 57-232 37-216 (272)
77 1h6u_A Internalin H; cell adhe 99.8 3.3E-18 1.1E-22 170.5 15.7 191 36-238 39-233 (308)
78 2o6q_A Variable lymphocyte rec 99.8 2.6E-17 8.9E-22 160.6 21.3 185 3-211 27-218 (270)
79 1p9a_G Platelet glycoprotein I 99.8 1.8E-17 6.2E-22 163.6 20.1 181 34-240 6-190 (290)
80 2ca6_A RAN GTPase-activating p 99.7 3.4E-19 1.2E-23 183.2 3.2 220 12-232 30-314 (386)
81 2ast_B S-phase kinase-associat 99.7 3.2E-19 1.1E-23 179.4 3.0 216 13-231 46-282 (336)
82 2ast_B S-phase kinase-associat 99.7 4.1E-19 1.4E-23 178.6 2.3 224 14-241 70-313 (336)
83 4glp_A Monocyte differentiatio 99.7 1.1E-17 3.8E-22 166.7 11.0 194 13-212 90-308 (310)
84 3cvr_A Invasion plasmid antige 99.7 8.2E-17 2.8E-21 172.9 18.3 184 15-219 60-252 (571)
85 1h6u_A Internalin H; cell adhe 99.7 6.8E-17 2.3E-21 160.9 16.1 193 12-216 39-235 (308)
86 3m19_A Variable lymphocyte rec 99.7 2.4E-16 8.1E-21 152.1 18.7 175 14-212 14-193 (251)
87 4ay9_X Follicle-stimulating ho 99.7 3.3E-16 1.1E-20 158.7 18.0 219 17-260 12-241 (350)
88 1z7x_W Ribonuclease inhibitor; 99.7 1.6E-18 5.3E-23 182.0 -1.9 268 12-282 54-411 (461)
89 2ca6_A RAN GTPase-activating p 99.7 2E-18 6.7E-23 177.4 -1.3 237 14-252 9-313 (386)
90 1z7x_W Ribonuclease inhibitor; 99.7 1.5E-18 5.1E-23 182.1 -2.4 268 12-282 26-354 (461)
91 3m19_A Variable lymphocyte rec 99.7 1.8E-15 6.2E-20 145.8 18.8 163 2-186 24-189 (251)
92 4ezg_A Putative uncharacterize 99.6 3E-16 1E-20 145.6 9.1 147 12-162 42-191 (197)
93 1h6t_A Internalin B; cell adhe 99.6 9.5E-17 3.2E-21 158.5 5.5 189 15-237 25-215 (291)
94 3goz_A Leucine-rich repeat-con 99.6 6.5E-18 2.2E-22 172.1 -3.0 213 19-232 3-264 (362)
95 3cvr_A Invasion plasmid antige 99.6 3.7E-15 1.3E-19 160.1 17.5 175 2-196 69-252 (571)
96 2o6s_A Variable lymphocyte rec 99.6 2.2E-15 7.6E-20 140.8 13.6 175 17-220 10-188 (208)
97 3goz_A Leucine-rich repeat-con 99.6 8.6E-18 3E-22 171.2 -3.7 220 12-232 20-295 (362)
98 1m9s_A Internalin B; cell inva 99.6 2.1E-16 7.2E-21 171.3 5.7 187 13-232 20-208 (605)
99 2o6s_A Variable lymphocyte rec 99.6 1.2E-14 4.2E-19 135.7 14.6 163 3-175 18-188 (208)
100 1h6t_A Internalin B; cell adhe 99.6 6.5E-15 2.2E-19 145.3 12.3 180 42-253 28-211 (291)
101 1xeu_A Internalin C; cellular 99.6 8.5E-16 2.9E-20 149.4 5.7 166 12-231 17-182 (263)
102 4ezg_A Putative uncharacterize 99.6 1.3E-14 4.5E-19 134.5 12.9 148 58-232 41-192 (197)
103 1m9s_A Internalin B; cell inva 99.6 4.1E-15 1.4E-19 161.2 9.6 184 38-253 21-208 (605)
104 3e6j_A Variable lymphocyte rec 99.6 5.4E-14 1.9E-18 133.6 16.0 148 17-211 22-172 (229)
105 2xot_A Amphoterin-induced prot 99.5 8.5E-14 2.9E-18 141.6 15.6 169 17-232 21-200 (361)
106 3ogk_B Coronatine-insensitive 99.5 9E-16 3.1E-20 166.1 0.5 265 16-282 140-476 (592)
107 1dce_A Protein (RAB geranylger 99.5 7.7E-17 2.6E-21 173.6 -7.8 176 57-239 345-550 (567)
108 2xot_A Amphoterin-induced prot 99.5 4.5E-14 1.5E-18 143.6 13.0 141 3-166 29-177 (361)
109 2v9t_B SLIT homolog 2 protein 99.5 1.4E-13 4.9E-18 129.9 15.1 146 17-186 14-162 (220)
110 2v70_A SLIT-2, SLIT homolog 2 99.5 8.2E-14 2.8E-18 131.6 13.1 146 17-186 14-163 (220)
111 1dce_A Protein (RAB geranylger 99.5 6.8E-17 2.3E-21 174.0 -10.0 202 12-228 347-567 (567)
112 3ogk_B Coronatine-insensitive 99.5 2.3E-15 7.9E-20 162.9 1.9 56 12-69 190-251 (592)
113 1xeu_A Internalin C; cellular 99.5 1.8E-14 6.3E-19 139.9 6.6 163 37-253 18-183 (263)
114 2v9t_B SLIT homolog 2 protein 99.5 3.8E-13 1.3E-17 127.0 15.0 139 3-164 22-164 (220)
115 3e6j_A Variable lymphocyte rec 99.5 4.5E-13 1.6E-17 127.2 15.2 147 40-232 21-170 (229)
116 2v70_A SLIT-2, SLIT homolog 2 99.5 4.7E-13 1.6E-17 126.3 14.2 141 3-166 22-167 (220)
117 2p1m_B Transport inhibitor res 99.4 7.3E-15 2.5E-19 158.9 -2.1 84 12-96 103-195 (594)
118 3sb4_A Hypothetical leucine ri 99.4 7.5E-13 2.6E-17 132.7 12.4 87 151-239 225-314 (329)
119 4b8c_D Glucose-repressible alc 99.4 4.1E-14 1.4E-18 156.9 1.7 186 12-208 171-369 (727)
120 2ell_A Acidic leucine-rich nuc 99.4 8.2E-13 2.8E-17 118.9 10.0 129 12-164 22-159 (168)
121 2ell_A Acidic leucine-rich nuc 99.4 1.8E-12 6.1E-17 116.6 11.8 91 148-239 67-164 (168)
122 1w8a_A SLIT protein; signaling 99.4 4.9E-12 1.7E-16 116.6 13.3 126 17-166 11-140 (192)
123 2p1m_B Transport inhibitor res 99.4 3.4E-14 1.2E-18 153.6 -2.1 185 106-299 287-518 (594)
124 2wfh_A SLIT homolog 2 protein 99.3 6.3E-12 2.1E-16 116.1 13.1 119 18-141 14-138 (193)
125 1w8a_A SLIT protein; signaling 99.3 5.7E-12 2E-16 116.2 12.4 118 2-121 18-139 (192)
126 2je0_A Acidic leucine-rich nuc 99.3 7.4E-13 2.5E-17 116.6 5.9 82 13-96 16-99 (149)
127 2je0_A Acidic leucine-rich nuc 99.3 3E-12 1E-16 112.7 8.7 83 148-230 60-149 (149)
128 4b8c_D Glucose-repressible alc 99.3 2.7E-13 9.2E-18 150.3 2.2 175 26-210 212-403 (727)
129 2wfh_A SLIT homolog 2 protein 99.3 1.8E-11 6.1E-16 113.0 12.3 120 112-232 14-137 (193)
130 1a9n_A U2A', U2A'; complex (nu 99.3 2.8E-12 9.7E-17 116.4 6.5 127 12-163 17-151 (176)
131 1a9n_A U2A', U2A'; complex (nu 99.3 1.1E-11 3.9E-16 112.4 9.3 102 130-232 43-151 (176)
132 2o6r_A Variable lymphocyte rec 99.2 8.4E-11 2.9E-15 106.6 13.9 129 16-168 9-140 (177)
133 2o6r_A Variable lymphocyte rec 99.2 1.3E-10 4.4E-15 105.4 13.2 117 3-122 18-138 (177)
134 3sb4_A Hypothetical leucine ri 99.1 1.1E-10 3.7E-15 116.9 9.0 211 14-227 25-327 (329)
135 4fdw_A Leucine rich hypothetic 99.1 7.3E-09 2.5E-13 106.5 22.2 215 4-231 124-355 (401)
136 3g39_A Variable lymphocyte rec 99.1 6.8E-10 2.3E-14 100.1 11.5 103 15-120 10-114 (170)
137 1ds9_A Outer arm dynein; leuci 99.1 2.4E-12 8.3E-17 119.2 -5.0 124 77-227 40-180 (198)
138 2r9u_A Variable lymphocyte rec 99.0 8.4E-10 2.9E-14 99.9 11.1 99 132-232 15-116 (174)
139 2r9u_A Variable lymphocyte rec 99.0 1.1E-09 3.9E-14 99.1 11.5 99 16-119 14-116 (174)
140 3g39_A Variable lymphocyte rec 99.0 1.2E-09 4.2E-14 98.4 10.9 99 132-232 12-113 (170)
141 1ds9_A Outer arm dynein; leuci 99.0 3E-12 1E-16 118.5 -7.8 122 57-182 44-180 (198)
142 4fdw_A Leucine rich hypothetic 99.0 3.2E-08 1.1E-12 101.7 20.8 216 4-230 146-379 (401)
143 3un9_A NLR family member X1; l 98.7 4.2E-10 1.5E-14 114.6 -3.0 104 129-232 126-250 (372)
144 2ifg_A High affinity nerve gro 98.7 2.2E-08 7.6E-13 100.5 9.7 98 133-231 12-113 (347)
145 2ifg_A High affinity nerve gro 98.7 4.8E-08 1.6E-12 98.1 9.8 99 18-119 12-114 (347)
146 3un9_A NLR family member X1; l 98.6 8.8E-10 3E-14 112.3 -6.4 159 38-212 72-253 (372)
147 2ra8_A Uncharacterized protein 98.4 1.2E-07 4.2E-12 95.8 4.3 153 31-186 132-317 (362)
148 4gt6_A Cell surface protein; l 98.4 7.7E-06 2.6E-10 83.6 17.7 220 2-229 49-319 (394)
149 2ra8_A Uncharacterized protein 98.3 3.8E-07 1.3E-11 92.3 5.8 34 197-230 278-316 (362)
150 4gt6_A Cell surface protein; l 98.2 8.1E-05 2.8E-09 75.9 20.0 225 5-239 76-350 (394)
151 4fs7_A Uncharacterized protein 98.2 3E-05 1E-09 79.1 16.5 194 32-238 156-358 (394)
152 4fs7_A Uncharacterized protein 98.2 2.9E-05 9.8E-10 79.3 15.5 206 11-230 158-375 (394)
153 4h09_A Hypothetical leucine ri 98.2 0.00027 9.3E-09 71.4 22.7 103 148-260 236-340 (379)
154 3e4g_A ATP synthase subunit S, 98.0 2.5E-06 8.5E-11 76.6 2.9 86 38-123 61-154 (176)
155 1io0_A Tropomodulin; LRR prote 97.7 1.7E-05 5.9E-10 72.0 3.4 87 145-231 58-161 (185)
156 3rw6_A Nuclear RNA export fact 97.6 1.9E-05 6.5E-10 76.0 2.8 98 14-114 141-257 (267)
157 3e4g_A ATP synthase subunit S, 97.6 5.7E-05 2E-09 67.7 5.5 84 152-236 61-154 (176)
158 4h09_A Hypothetical leucine ri 97.5 0.0049 1.7E-07 62.0 19.0 119 106-229 215-341 (379)
159 3rw6_A Nuclear RNA export fact 97.3 0.00028 9.6E-09 67.8 5.9 36 150-185 168-205 (267)
160 1io0_A Tropomodulin; LRR prote 97.2 3.5E-05 1.2E-09 69.9 -0.8 17 195-211 148-164 (185)
161 3rfe_A Platelet glycoprotein I 95.2 0.024 8.1E-07 47.9 5.3 52 18-73 12-67 (130)
162 1pgv_A TMD-1, tropomodulin TMD 94.0 0.033 1.1E-06 50.6 3.7 60 172-231 66-136 (197)
163 3rfe_A Platelet glycoprotein I 94.0 0.076 2.6E-06 44.7 5.6 35 62-96 32-66 (130)
164 1pgv_A TMD-1, tropomodulin TMD 92.8 0.098 3.4E-06 47.4 4.7 61 191-252 63-136 (197)
165 2lz0_A Uncharacterized protein 39.3 37 0.0013 26.4 4.6 37 32-70 14-52 (100)
No 1
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.94 E-value=6e-26 Score=238.37 Aligned_cols=277 Identities=15% Similarity=0.128 Sum_probs=178.3
Q ss_pred CCCCCCCCCCCCCccEEeccCCCCCccc-cccCCCCCCccEEEccCCCCCCCCC--CCCCCCCccEEeeccccCCcccCc
Q 043008 3 PLRTLPSNFKPKNLVELNLPYGHKVVQI-WEGKKRAFKLKFINLSHSQCHIKIP--DPSETPNLERIDILNCTNPACVLS 79 (517)
Q Consensus 3 pl~~lP~~f~~~~L~~L~L~~n~~l~~l-~~~~~~l~~L~~L~Ls~~~~l~~~p--~l~~l~~L~~L~L~~~~~l~~~p~ 79 (517)
.++.+|. -+++|++|+|++| .++.+ +..+..+++|++|+|++|.+...++ .|.++++|++|+|++|......|.
T Consensus 21 ~l~~lp~--l~~~l~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 97 (455)
T 3v47_A 21 GLHQVPE--LPAHVNYVDLSLN-SIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETG 97 (455)
T ss_dssp CCSSCCC--CCTTCCEEECCSS-CCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTT
T ss_pred CcccCCC--CCCccCEEEecCC-ccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChh
Confidence 4667777 3588899999988 88877 6778888889999998888665554 378888888888888877666778
Q ss_pred cccCCCCCCEEeccCCcCccccCCC--C-CCCCCcEEEEecCCCCCccCCC----CCCCcEEEeecccCcccC-CcCC--
Q 043008 80 SITNFNHLSMLCFRHCKNLRHFPNN--L-HFVCPIIIDFSYCVNLTEFPQI----SGNIIDLILTETAIEEVP-SSTE-- 149 (517)
Q Consensus 80 si~~l~~L~~L~L~~~~~l~~lp~~--~-~l~sL~~L~L~~c~~l~~~p~~----~~~L~~L~L~~~~i~~lp-~~i~-- 149 (517)
.++++++|++|++++|......|.. + ++++|++|++++|......|.. +.+|+.|++++|.+..++ ..+.
T Consensus 98 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l 177 (455)
T 3v47_A 98 AFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNF 177 (455)
T ss_dssp TTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGG
T ss_pred hccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcc
Confidence 8888888888888888766544433 5 7888888888887655554543 355677888777776432 2221
Q ss_pred --------------------------------CCCCccEEEcccCcCC--------------------------------
Q 043008 150 --------------------------------CLTNLQYLFLCSCKKL-------------------------------- 165 (517)
Q Consensus 150 --------------------------------~l~~L~~L~l~~~~~l-------------------------------- 165 (517)
.+++|+.|++++|.+.
T Consensus 178 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 257 (455)
T 3v47_A 178 QGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFG 257 (455)
T ss_dssp TTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTT
T ss_pred ccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccc
Confidence 2245555555555443
Q ss_pred -------------------------------ccccccccCCCCCcEEEcCCC-CCcC-CccCCCCCCCCEEEecCCCCCc
Q 043008 166 -------------------------------KRVSTSICKFKSLVWLSLNND-LTAI-PQEIGCLSSLECLNLGGNNFEG 212 (517)
Q Consensus 166 -------------------------------~~lp~~l~~l~~L~~L~Ls~~-l~~l-p~~l~~l~~L~~L~Ls~n~l~~ 212 (517)
+..|..+..+++|+.|++++| +..+ |..+..+++|++|+|++|.++.
T Consensus 258 ~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 337 (455)
T 3v47_A 258 HTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGS 337 (455)
T ss_dssp CCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCE
T ss_pred hhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCC
Confidence 334445556666666666554 3333 4456666667777777776665
Q ss_pred c-hhhhhcCCCCCEEeccCCCCCCcCCCCC---CCccEEecccccCcCcCCCCCchhhhcchhhHHhhhcCCCCCcc
Q 043008 213 L-PASIKQISRLECLDLSYCNSLQSLPELP---LHLEVLLATNCKRLQSLPEIPSCLEELDASVLEKLSKHSFGEEY 285 (517)
Q Consensus 213 l-p~~l~~l~~L~~L~L~~c~~l~~lp~l~---~~L~~L~~~~c~~l~~l~~~~~~L~~L~~l~~~~Ls~n~~~~~~ 285 (517)
+ |..+..+++|+.|+|++|+.....|..+ ++|+.|++.++ .++ ...+..+..++.++.++|++|++++.|
T Consensus 338 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~--~~~~~~~~~l~~L~~L~l~~N~l~~~~ 411 (455)
T 3v47_A 338 IDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTN-QLK--SVPDGIFDRLTSLQKIWLHTNPWDCSC 411 (455)
T ss_dssp ECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCS--CCCTTTTTTCTTCCEEECCSSCBCCCT
T ss_pred cChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCC-ccc--cCCHhHhccCCcccEEEccCCCcccCC
Confidence 4 4556666777777776643322224332 45555555542 222 223334566666666677777765444
No 2
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.93 E-value=2e-25 Score=236.17 Aligned_cols=273 Identities=14% Similarity=0.136 Sum_probs=171.0
Q ss_pred CCCCCCCCCCCCccEEeccCCCCCccc-cccCCCCCCccEEEccCCCCCCCCC-CCCCCCCccEEeeccccCCcccCccc
Q 043008 4 LRTLPSNFKPKNLVELNLPYGHKVVQI-WEGKKRAFKLKFINLSHSQCHIKIP-DPSETPNLERIDILNCTNPACVLSSI 81 (517)
Q Consensus 4 l~~lP~~f~~~~L~~L~L~~n~~l~~l-~~~~~~l~~L~~L~Ls~~~~l~~~p-~l~~l~~L~~L~L~~~~~l~~~p~si 81 (517)
++.+|..+ +++|+.|+|++| .++.+ +..+..+++|++|+|++|.+....| .|.++++|++|+|++|......+..+
T Consensus 23 l~~ip~~~-~~~l~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 100 (477)
T 2id5_A 23 FVAVPEGI-PTETRLLDLGKN-RIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVF 100 (477)
T ss_dssp CSSCCSCC-CTTCSEEECCSS-CCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSS
T ss_pred cCcCCCCC-CCCCcEEECCCC-ccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccc
Confidence 56677665 567888888888 78777 4677888888888888887655555 37788888888888875443333456
Q ss_pred cCCCCCCEEeccCCcCccccCCCC-CCCCCcEEEEecCCCCCccCCC---CCCCcEEEeecccCcccCC-cCCCCCCccE
Q 043008 82 TNFNHLSMLCFRHCKNLRHFPNNL-HFVCPIIIDFSYCVNLTEFPQI---SGNIIDLILTETAIEEVPS-STECLTNLQY 156 (517)
Q Consensus 82 ~~l~~L~~L~L~~~~~l~~lp~~~-~l~sL~~L~L~~c~~l~~~p~~---~~~L~~L~L~~~~i~~lp~-~i~~l~~L~~ 156 (517)
+++++|++|+|++|......|..+ ++++|+.|++++|......|.. +.+|+.|++++|.++.+|. .+..+++|+.
T Consensus 101 ~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 180 (477)
T 2id5_A 101 TGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIV 180 (477)
T ss_dssp TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCE
T ss_pred cCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcE
Confidence 778888888888887766666666 7788888888876544333333 3456777777777776664 3667777777
Q ss_pred EEcccCcCCccccccccCCCCCcEEEcCCC--CCcCCccCCCCCCCCEEEecCCCCCcch-hhhhcCCCCCEEeccCCCC
Q 043008 157 LFLCSCKKLKRVSTSICKFKSLVWLSLNND--LTAIPQEIGCLSSLECLNLGGNNFEGLP-ASIKQISRLECLDLSYCNS 233 (517)
Q Consensus 157 L~l~~~~~l~~lp~~l~~l~~L~~L~Ls~~--l~~lp~~l~~l~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L~L~~c~~ 233 (517)
|++++|.+.+..+..+..+++|+.|+++++ +..+|.......+|+.|+|++|+++.+| ..+..+++|+.|+|++|+
T Consensus 181 L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~- 259 (477)
T 2id5_A 181 LRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNP- 259 (477)
T ss_dssp EEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSC-
T ss_pred EeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCc-
Confidence 777777666665666777777777777653 2445554444456666666666666655 345566666666666533
Q ss_pred CCcCCC-CC---CCccEEecccccCcCcCCCCCchhhhcchhhHHhhhcCCCC
Q 043008 234 LQSLPE-LP---LHLEVLLATNCKRLQSLPEIPSCLEELDASVLEKLSKHSFG 282 (517)
Q Consensus 234 l~~lp~-l~---~~L~~L~~~~c~~l~~l~~~~~~L~~L~~l~~~~Ls~n~~~ 282 (517)
++.++. .+ ++|+.|++.++. .....+..+..++.++.++|++|.++
T Consensus 260 l~~~~~~~~~~l~~L~~L~L~~n~---l~~~~~~~~~~l~~L~~L~L~~N~l~ 309 (477)
T 2id5_A 260 ISTIEGSMLHELLRLQEIQLVGGQ---LAVVEPYAFRGLNYLRVLNVSGNQLT 309 (477)
T ss_dssp CCEECTTSCTTCTTCCEEECCSSC---CSEECTTTBTTCTTCCEEECCSSCCS
T ss_pred CCccChhhccccccCCEEECCCCc---cceECHHHhcCcccCCEEECCCCcCc
Confidence 333332 11 344444444321 11122334444444444455554443
No 3
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.93 E-value=3.5e-25 Score=234.28 Aligned_cols=280 Identities=20% Similarity=0.171 Sum_probs=231.2
Q ss_pred CCCCCC-CCC-CCCCccEEeccCCCCCccc-cccCCCCCCccEEEccCCCCCCCCC-C-CCCCCCccEEeeccccCCccc
Q 043008 3 PLRTLP-SNF-KPKNLVELNLPYGHKVVQI-WEGKKRAFKLKFINLSHSQCHIKIP-D-PSETPNLERIDILNCTNPACV 77 (517)
Q Consensus 3 pl~~lP-~~f-~~~~L~~L~L~~n~~l~~l-~~~~~~l~~L~~L~Ls~~~~l~~~p-~-l~~l~~L~~L~L~~~~~l~~~ 77 (517)
.++.++ ..| ++++|++|+|++| .+..+ |..+.++++|++|+|++|.+ ..+| . |.++++|++|+|++|......
T Consensus 43 ~l~~~~~~~~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~Ls~n~i~~~~ 120 (477)
T 2id5_A 43 RIKTLNQDEFASFPHLEELELNEN-IVSAVEPGAFNNLFNLRTLGLRSNRL-KLIPLGVFTGLSNLTKLDISENKIVILL 120 (477)
T ss_dssp CCCEECTTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCC-CSCCTTSSTTCTTCCEEECTTSCCCEEC
T ss_pred ccceECHhHccCCCCCCEEECCCC-ccCEeChhhhhCCccCCEEECCCCcC-CccCcccccCCCCCCEEECCCCccccCC
Confidence 345564 346 8999999999999 99987 78899999999999999984 4555 3 789999999999999887778
Q ss_pred CccccCCCCCCEEeccCCcCccccCCCC-CCCCCcEEEEecCCCCCccCC----CCCCCcEEEeecccCcccCC-cCCCC
Q 043008 78 LSSITNFNHLSMLCFRHCKNLRHFPNNL-HFVCPIIIDFSYCVNLTEFPQ----ISGNIIDLILTETAIEEVPS-STECL 151 (517)
Q Consensus 78 p~si~~l~~L~~L~L~~~~~l~~lp~~~-~l~sL~~L~L~~c~~l~~~p~----~~~~L~~L~L~~~~i~~lp~-~i~~l 151 (517)
+..+..+++|++|++++|......|..+ ++++|+.|++++|. +..+|. .+.+|+.|++++|.+..++. .+..+
T Consensus 121 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l 199 (477)
T 2id5_A 121 DYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCN-LTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRL 199 (477)
T ss_dssp TTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCC-CSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSC
T ss_pred hhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCc-CcccChhHhcccCCCcEEeCCCCcCcEeChhhcccC
Confidence 8899999999999999998877777778 99999999999975 455552 35678999999999997765 68899
Q ss_pred CCccEEEcccCcCCccccccccCCCCCcEEEcCCC-CCcCCc-cCCCCCCCCEEEecCCCCCcch-hhhhcCCCCCEEec
Q 043008 152 TNLQYLFLCSCKKLKRVSTSICKFKSLVWLSLNND-LTAIPQ-EIGCLSSLECLNLGGNNFEGLP-ASIKQISRLECLDL 228 (517)
Q Consensus 152 ~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~Ls~~-l~~lp~-~l~~l~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L~L 228 (517)
++|+.|++++|...+.+|.......+|+.|+++++ +..+|. .+..+++|+.|+|++|.++.++ ..+..+++|+.|+|
T Consensus 200 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 279 (477)
T 2id5_A 200 YRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQL 279 (477)
T ss_dssp TTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEEC
T ss_pred cccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEEC
Confidence 99999999999999999988888889999999764 677774 5889999999999999999875 46889999999999
Q ss_pred cCCCCCCcCCCCC---CCccEEecccccCcCcCCCCCchhhhcchhhHHhhhcCCCCCcceee
Q 043008 229 SYCNSLQSLPELP---LHLEVLLATNCKRLQSLPEIPSCLEELDASVLEKLSKHSFGEEYRIW 288 (517)
Q Consensus 229 ~~c~~l~~lp~l~---~~L~~L~~~~c~~l~~l~~~~~~L~~L~~l~~~~Ls~n~~~~~~~l~ 288 (517)
++|+.....|..+ ++|+.|++.++ ......+..+..++.+..++|++|++.+.|.+.
T Consensus 280 ~~n~l~~~~~~~~~~l~~L~~L~L~~N---~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~ 339 (477)
T 2id5_A 280 VGGQLAVVEPYAFRGLNYLRVLNVSGN---QLTTLEESVFHSVGNLETLILDSNPLACDCRLL 339 (477)
T ss_dssp CSSCCSEECTTTBTTCTTCCEEECCSS---CCSCCCGGGBSCGGGCCEEECCSSCEECSGGGH
T ss_pred CCCccceECHHHhcCcccCCEEECCCC---cCceeCHhHcCCCcccCEEEccCCCccCccchH
Confidence 9854444335443 57777777664 233344456778888899999999998777543
No 4
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.93 E-value=1.7e-25 Score=243.58 Aligned_cols=281 Identities=19% Similarity=0.122 Sum_probs=206.0
Q ss_pred CCCCCCC-C-CCCCccEEeccCCCCCccccccCCCCCCccEEEccCCCCCCCCC-CCCCCCCccEEeeccccCCcccCcc
Q 043008 4 LRTLPSN-F-KPKNLVELNLPYGHKVVQIWEGKKRAFKLKFINLSHSQCHIKIP-DPSETPNLERIDILNCTNPACVLSS 80 (517)
Q Consensus 4 l~~lP~~-f-~~~~L~~L~L~~n~~l~~l~~~~~~l~~L~~L~Ls~~~~l~~~p-~l~~l~~L~~L~L~~~~~l~~~p~s 80 (517)
+..+|.. | .+++|++|++++| .+..+|.++..+++|++|++++|.+....| .+..+++|++|++++|.....+|..
T Consensus 266 l~~~~~~~~~~l~~L~~L~l~~n-~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~ 344 (606)
T 3t6q_A 266 FFNISSNTFHCFSGLQELDLTAT-HLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTG 344 (606)
T ss_dssp CSSCCTTTTTTCTTCSEEECTTS-CCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSS
T ss_pred cCccCHHHhccccCCCEEeccCC-ccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchh
Confidence 4555554 4 6788888888888 888888888888888888888887655545 4778888888888888766555543
Q ss_pred -ccCCCCCCEEeccCCcCcccc--CCCC-CCCCCcEEEEecCCCCCccCCCC---CCCcEEEeecccCccc-C-CcCCCC
Q 043008 81 -ITNFNHLSMLCFRHCKNLRHF--PNNL-HFVCPIIIDFSYCVNLTEFPQIS---GNIIDLILTETAIEEV-P-SSTECL 151 (517)
Q Consensus 81 -i~~l~~L~~L~L~~~~~l~~l--p~~~-~l~sL~~L~L~~c~~l~~~p~~~---~~L~~L~L~~~~i~~l-p-~~i~~l 151 (517)
++.+++|++|++++|...... |..+ .+++|++|++++|......|..+ .+|+.|++++|.+... | ..+..+
T Consensus 345 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l 424 (606)
T 3t6q_A 345 CLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNL 424 (606)
T ss_dssp TTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTC
T ss_pred hhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCc
Confidence 778888888888888765544 5556 78888888888876555545443 4568888888888744 3 337788
Q ss_pred CCccEEEcccCcCCccccccccCCCCCcEEEcCCCC-Cc----CCccCCCCCCCCEEEecCCCCCcc-hhhhhcCCCCCE
Q 043008 152 TNLQYLFLCSCKKLKRVSTSICKFKSLVWLSLNNDL-TA----IPQEIGCLSSLECLNLGGNNFEGL-PASIKQISRLEC 225 (517)
Q Consensus 152 ~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~Ls~~l-~~----lp~~l~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~ 225 (517)
++|+.|++++|.+.+..|..+..+++|+.|++++|. .. .+..+..+++|++|+|++|+++.+ |..+..+++|+.
T Consensus 425 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 504 (606)
T 3t6q_A 425 HLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNH 504 (606)
T ss_dssp TTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred ccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCE
Confidence 888888888888777778888888888888887763 22 234577888888888888888875 577888888888
Q ss_pred EeccCCCCCCcCCCCCCCccEEecccccCcCcCCCCCchhhhcchhhHHhhhcCCCCCcce
Q 043008 226 LDLSYCNSLQSLPELPLHLEVLLATNCKRLQSLPEIPSCLEELDASVLEKLSKHSFGEEYR 286 (517)
Q Consensus 226 L~L~~c~~l~~lp~l~~~L~~L~~~~c~~l~~l~~~~~~L~~L~~l~~~~Ls~n~~~~~~~ 286 (517)
|+|++|+.....|+.+..++.| ..++..++.....|..+..++.++.+++++||+.+.|.
T Consensus 505 L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 505 VDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS 564 (606)
T ss_dssp EECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred EECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence 8888865555555555555544 33444444455666778888888888889998876663
No 5
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.93 E-value=2.6e-26 Score=257.07 Aligned_cols=248 Identities=20% Similarity=0.189 Sum_probs=145.8
Q ss_pred CCCccEEEccCCCCCCCCCC-CCCCCCccEEeeccccCCcccCccccCCCCCCEEeccCCcCccccCCCC-CCCCCcEEE
Q 043008 37 AFKLKFINLSHSQCHIKIPD-PSETPNLERIDILNCTNPACVLSSITNFNHLSMLCFRHCKNLRHFPNNL-HFVCPIIID 114 (517)
Q Consensus 37 l~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~~~~l~~~p~si~~l~~L~~L~L~~~~~l~~lp~~~-~l~sL~~L~ 114 (517)
+++|++|+|++|.+...+|. +..+++|++|+|++|.....+|..++.+++|++|++++|.....+|..+ .+++|++|+
T Consensus 393 ~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 472 (768)
T 3rgz_A 393 KNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLI 472 (768)
T ss_dssp TCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEE
T ss_pred cCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEE
Confidence 34445555554444334442 4555555555555555544555555555566666666555555555555 556666666
Q ss_pred EecCCCCCccCCCC---CCCcEEEeecccCc-ccCCcCCCCCCccEEEcccCcCCccccccccCCCCCcEEEcCCCC--C
Q 043008 115 FSYCVNLTEFPQIS---GNIIDLILTETAIE-EVPSSTECLTNLQYLFLCSCKKLKRVSTSICKFKSLVWLSLNNDL--T 188 (517)
Q Consensus 115 L~~c~~l~~~p~~~---~~L~~L~L~~~~i~-~lp~~i~~l~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~Ls~~l--~ 188 (517)
+++|.....+|..+ .+|+.|++++|.+. .+|.+++.+++|+.|++++|.+.+.+|..++.+++|+.|++++|. +
T Consensus 473 L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g 552 (768)
T 3rgz_A 473 LDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNG 552 (768)
T ss_dssp CCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEES
T ss_pred ecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCC
Confidence 66655554555433 33466666666665 556666666666666666666666666666666666666665432 1
Q ss_pred cC----------------------------------------------------------------------CccCCCCC
Q 043008 189 AI----------------------------------------------------------------------PQEIGCLS 198 (517)
Q Consensus 189 ~l----------------------------------------------------------------------p~~l~~l~ 198 (517)
.+ |..+..++
T Consensus 553 ~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~ 632 (768)
T 3rgz_A 553 TIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNG 632 (768)
T ss_dssp BCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSB
T ss_pred cCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccc
Confidence 22 22344456
Q ss_pred CCCEEEecCCCCC-cchhhhhcCCCCCEEeccCCCCCCcCCCCCCCccEEecccccCcCcCCCCCchhhhcchhhHHhhh
Q 043008 199 SLECLNLGGNNFE-GLPASIKQISRLECLDLSYCNSLQSLPELPLHLEVLLATNCKRLQSLPEIPSCLEELDASVLEKLS 277 (517)
Q Consensus 199 ~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~c~~l~~lp~l~~~L~~L~~~~c~~l~~l~~~~~~L~~L~~l~~~~Ls 277 (517)
+|+.|+|++|+++ .+|..+..+++|+.|+|++|+....+|+.+..++.|...++..++.....|..+..|+.+..++|+
T Consensus 633 ~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls 712 (768)
T 3rgz_A 633 SMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLS 712 (768)
T ss_dssp CCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECC
T ss_pred cccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECc
Confidence 7777777777777 477777777777777777765555677655444433333444445555667777777777777777
Q ss_pred cCCCCCc
Q 043008 278 KHSFGEE 284 (517)
Q Consensus 278 ~n~~~~~ 284 (517)
+|+++|.
T Consensus 713 ~N~l~g~ 719 (768)
T 3rgz_A 713 NNNLSGP 719 (768)
T ss_dssp SSEEEEE
T ss_pred CCccccc
Confidence 7776643
No 6
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.93 E-value=5.1e-26 Score=249.35 Aligned_cols=280 Identities=15% Similarity=0.146 Sum_probs=235.4
Q ss_pred CCCCCC-CCCCccEEeccCCCCCcc------------------ccccCC--CCCCccEEEccCCCCCCCCCC-CCCCCCc
Q 043008 6 TLPSNF-KPKNLVELNLPYGHKVVQ------------------IWEGKK--RAFKLKFINLSHSQCHIKIPD-PSETPNL 63 (517)
Q Consensus 6 ~lP~~f-~~~~L~~L~L~~n~~l~~------------------l~~~~~--~l~~L~~L~Ls~~~~l~~~p~-l~~l~~L 63 (517)
.+|..| ++++|++|+|++| .+.. +|..+. ++++|++|+|++|.+...+|. +.++++|
T Consensus 197 ~ip~~l~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 275 (636)
T 4eco_A 197 FVSKAVMRLTKLRQFYMGNS-PFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEM 275 (636)
T ss_dssp EECGGGGGCTTCCEEEEESC-CCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSC
T ss_pred cCCHHHhcccCCCEEECcCC-ccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCC
Confidence 478777 8999999999999 8888 999999 999999999999999999995 8999999
Q ss_pred cEEeecccc-CCc-ccCccccCC------CCCCEEeccCCcCccccCC--CC-CCCCCcEEEEecCCCCCccCCCCC---
Q 043008 64 ERIDILNCT-NPA-CVLSSITNF------NHLSMLCFRHCKNLRHFPN--NL-HFVCPIIIDFSYCVNLTEFPQISG--- 129 (517)
Q Consensus 64 ~~L~L~~~~-~l~-~~p~si~~l------~~L~~L~L~~~~~l~~lp~--~~-~l~sL~~L~L~~c~~l~~~p~~~~--- 129 (517)
++|+|++|. ... .+|..++.+ ++|++|++++|... .+|. .+ ++++|+.|++++|.....+| .+.
T Consensus 276 ~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~ 353 (636)
T 4eco_A 276 QLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEI 353 (636)
T ss_dssp CEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEE
T ss_pred CEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCC
Confidence 999999997 555 789988887 99999999999776 8998 77 99999999999987655888 544
Q ss_pred CCcEEEeecccCcccCCcCCCCCC-ccEEEcccCcCCccccccccCCC--CCcEEEcCCCC--CcCCccCC-------CC
Q 043008 130 NIIDLILTETAIEEVPSSTECLTN-LQYLFLCSCKKLKRVSTSICKFK--SLVWLSLNNDL--TAIPQEIG-------CL 197 (517)
Q Consensus 130 ~L~~L~L~~~~i~~lp~~i~~l~~-L~~L~l~~~~~l~~lp~~l~~l~--~L~~L~Ls~~l--~~lp~~l~-------~l 197 (517)
+|+.|++++|.+..+|..+..+++ |+.|++++|.+. .+|..+..++ +|+.|++++|. ..+|..+. .+
T Consensus 354 ~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~ 432 (636)
T 4eco_A 354 KLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKG 432 (636)
T ss_dssp EESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCC
T ss_pred CCCEEECCCCccccccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccC
Confidence 569999999999999999999999 999999999876 8888887755 89999998864 45667777 78
Q ss_pred CCCCEEEecCCCCCcchhhh-hcCCCCCEEeccCCCCCCcCCCCC-C----------CccEEecccccCcCcCCCCCchh
Q 043008 198 SSLECLNLGGNNFEGLPASI-KQISRLECLDLSYCNSLQSLPELP-L----------HLEVLLATNCKRLQSLPEIPSCL 265 (517)
Q Consensus 198 ~~L~~L~Ls~n~l~~lp~~l-~~l~~L~~L~L~~c~~l~~lp~l~-~----------~L~~L~~~~c~~l~~l~~~~~~L 265 (517)
++|++|+|++|+++.+|..+ ..+++|+.|+|++| .++.+|... . +|+.|++.++. +. ..|..+
T Consensus 433 ~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~---~lp~~~ 507 (636)
T 4eco_A 433 INVSSINLSNNQISKFPKELFSTGSPLSSINLMGN-MLTEIPKNSLKDENENFKNTYLLTSIDLRFNK-LT---KLSDDF 507 (636)
T ss_dssp CCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSS-CCSBCCSSSSEETTEECTTGGGCCEEECCSSC-CC---BCCGGG
T ss_pred CCCCEEECcCCccCcCCHHHHccCCCCCEEECCCC-CCCCcCHHHhccccccccccCCccEEECcCCc-CC---ccChhh
Confidence 89999999999999998765 45999999999984 566887632 2 78889887753 33 456666
Q ss_pred h--hcchhhHHhhhcCCCCCcceeeeeEEeeeCCCCc
Q 043008 266 E--ELDASVLEKLSKHSFGEEYRIWSIKFNFTNCLKL 300 (517)
Q Consensus 266 ~--~L~~l~~~~Ls~n~~~~~~~l~~l~~~~~nC~kL 300 (517)
. .++.++.++|++|.+++. +..+.+|.+|
T Consensus 508 ~~~~l~~L~~L~Ls~N~l~~i------p~~~~~l~~L 538 (636)
T 4eco_A 508 RATTLPYLVGIDLSYNSFSKF------PTQPLNSSTL 538 (636)
T ss_dssp STTTCTTCCEEECCSSCCSSC------CCGGGGCSSC
T ss_pred hhccCCCcCEEECCCCCCCCc------ChhhhcCCCC
Confidence 5 888899999999998752 2234556655
No 7
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.93 E-value=5e-25 Score=221.98 Aligned_cols=214 Identities=21% Similarity=0.280 Sum_probs=153.0
Q ss_pred CCCccEEeccCCCCCccccccCCCCCCccEEEccCCCCCCCCCC-CCCCCCccEEeeccccCCcccCccccCCCCCCEEe
Q 043008 13 PKNLVELNLPYGHKVVQIWEGKKRAFKLKFINLSHSQCHIKIPD-PSETPNLERIDILNCTNPACVLSSITNFNHLSMLC 91 (517)
Q Consensus 13 ~~~L~~L~L~~n~~l~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~~~~l~~~p~si~~l~~L~~L~ 91 (517)
..+++.|+|++| .+..+|..+..+++|++|+|++|.+. .+|. +..+++|++|+|++|... .+|..++.+++|++|+
T Consensus 80 ~~~l~~L~L~~n-~l~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 80 QPGRVALELRSV-PLPQFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS 156 (328)
T ss_dssp STTCCEEEEESS-CCSSCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred ccceeEEEccCC-CchhcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence 478888999888 88888888888889999999988855 7774 788888999999888554 7888888888889998
Q ss_pred ccCCcCccccCCCC-C---------CCCCcEEEEecCCCCCccCCCC---CCCcEEEeecccCcccCCcCCCCCCccEEE
Q 043008 92 FRHCKNLRHFPNNL-H---------FVCPIIIDFSYCVNLTEFPQIS---GNIIDLILTETAIEEVPSSTECLTNLQYLF 158 (517)
Q Consensus 92 L~~~~~l~~lp~~~-~---------l~sL~~L~L~~c~~l~~~p~~~---~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~ 158 (517)
+++|...+.+|..+ . +++|++|++++|. +..+|..+ .+|+.|++++|.+..+|..+..+++|+.|+
T Consensus 157 L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~ 235 (328)
T 4fcg_A 157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTG-IRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELD 235 (328)
T ss_dssp EEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEEC-CCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEE
T ss_pred CCCCCCccccChhHhhccchhhhccCCCCCEEECcCCC-cCcchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEE
Confidence 88888888888766 3 7777777777754 33555443 345666677666666666666666677777
Q ss_pred cccCcCCccccccccCCCCCcEEEcCCC--CCcCCccCCCCCCCCEEEecCCCCC-cchhhhhcCCCCCEEeccC
Q 043008 159 LCSCKKLKRVSTSICKFKSLVWLSLNND--LTAIPQEIGCLSSLECLNLGGNNFE-GLPASIKQISRLECLDLSY 230 (517)
Q Consensus 159 l~~~~~l~~lp~~l~~l~~L~~L~Ls~~--l~~lp~~l~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~ 230 (517)
+++|...+.+|..+..+++|+.|++++| .+.+|..+..+++|+.|+|++|++. .+|..+.++++|+.+++..
T Consensus 236 Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 236 LRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPP 310 (328)
T ss_dssp CTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCG
T ss_pred CcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCH
Confidence 7666666666666666666666666553 2555666666666666666665544 4666666666666666653
No 8
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.92 E-value=6.9e-26 Score=253.69 Aligned_cols=268 Identities=19% Similarity=0.221 Sum_probs=153.3
Q ss_pred CCCCccEEeccCCCCCcc-ccccCCCCCCccEEEccCCCCCCCCCC-CCC-CCCccEEeeccccCCcccCccccCCCCCC
Q 043008 12 KPKNLVELNLPYGHKVVQ-IWEGKKRAFKLKFINLSHSQCHIKIPD-PSE-TPNLERIDILNCTNPACVLSSITNFNHLS 88 (517)
Q Consensus 12 ~~~~L~~L~L~~n~~l~~-l~~~~~~l~~L~~L~Ls~~~~l~~~p~-l~~-l~~L~~L~L~~~~~l~~~p~si~~l~~L~ 88 (517)
++++|++|+|++| .+.. +|.. .+++|++|+|++|.+...+|. +.. +++|++|+|++|.....+|..++.+++|+
T Consensus 245 ~l~~L~~L~Ls~n-~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 321 (768)
T 3rgz_A 245 TCTELKLLNISSN-QFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLE 321 (768)
T ss_dssp TCSSCCEEECCSS-CCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCC
T ss_pred cCCCCCEEECCCC-cccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCcc
Confidence 4556666666665 4442 2221 455555555555554434443 322 25555555555544444455555555555
Q ss_pred EEeccCCcCc-------------------------cccCCCC-CCC-CCcEEEEecCCCCCccCCC-----CCCCcEEEe
Q 043008 89 MLCFRHCKNL-------------------------RHFPNNL-HFV-CPIIIDFSYCVNLTEFPQI-----SGNIIDLIL 136 (517)
Q Consensus 89 ~L~L~~~~~l-------------------------~~lp~~~-~l~-sL~~L~L~~c~~l~~~p~~-----~~~L~~L~L 136 (517)
+|++++|... ..+|..+ +++ +|++|++++|.....+|.. ..+|+.|++
T Consensus 322 ~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L 401 (768)
T 3rgz_A 322 SLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYL 401 (768)
T ss_dssp EEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEEC
T ss_pred EEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEEC
Confidence 5555554444 3444444 333 4555555544433333332 233566666
Q ss_pred ecccCc-ccCCcCCCCCCccEEEcccCcCCccccccccCCCCCcEEEcCCCC--CcCCccCCCCCCCCEEEecCCCCC-c
Q 043008 137 TETAIE-EVPSSTECLTNLQYLFLCSCKKLKRVSTSICKFKSLVWLSLNNDL--TAIPQEIGCLSSLECLNLGGNNFE-G 212 (517)
Q Consensus 137 ~~~~i~-~lp~~i~~l~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~Ls~~l--~~lp~~l~~l~~L~~L~Ls~n~l~-~ 212 (517)
++|.+. .+|..+.++++|+.|++++|.+.+.+|..+..+++|+.|++++|. +.+|..+..+++|++|+|++|+++ .
T Consensus 402 ~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ 481 (768)
T 3rgz_A 402 QNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGE 481 (768)
T ss_dssp CSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSC
T ss_pred CCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCc
Confidence 666666 556666677777777777776666667777777777777776543 356666777777777777777776 4
Q ss_pred chhhhhcCCCCCEEeccCCCCCCcCCCCC---CCccEEecccccCcCcCCCCCchhhhcchhhHHhhhcCCCCCcc
Q 043008 213 LPASIKQISRLECLDLSYCNSLQSLPELP---LHLEVLLATNCKRLQSLPEIPSCLEELDASVLEKLSKHSFGEEY 285 (517)
Q Consensus 213 lp~~l~~l~~L~~L~L~~c~~l~~lp~l~---~~L~~L~~~~c~~l~~l~~~~~~L~~L~~l~~~~Ls~n~~~~~~ 285 (517)
+|..+..+++|+.|+|++|+....+|..+ ++|+.|++.++. .....|..+..++.++.++|++|++.+..
T Consensus 482 ~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~---l~~~~p~~l~~l~~L~~L~Ls~N~l~g~i 554 (768)
T 3rgz_A 482 IPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNS---FSGNIPAELGDCRSLIWLDLNTNLFNGTI 554 (768)
T ss_dssp CCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSC---CEEECCGGGGGCTTCCEEECCSSEEESBC
T ss_pred CCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCc---ccCcCCHHHcCCCCCCEEECCCCccCCcC
Confidence 66777777777777777765555666543 455555555442 33345566777777777777777766443
No 9
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.92 E-value=6.1e-24 Score=213.84 Aligned_cols=228 Identities=16% Similarity=0.189 Sum_probs=147.4
Q ss_pred CCCCCCCCCCCCCccEEeccCCCCCccccc-cCCCCCCccEEEccCCCCCCCCC-CCCCCCCccEEeeccccCCcccCcc
Q 043008 3 PLRTLPSNFKPKNLVELNLPYGHKVVQIWE-GKKRAFKLKFINLSHSQCHIKIP-DPSETPNLERIDILNCTNPACVLSS 80 (517)
Q Consensus 3 pl~~lP~~f~~~~L~~L~L~~n~~l~~l~~-~~~~l~~L~~L~Ls~~~~l~~~p-~l~~l~~L~~L~L~~~~~l~~~p~s 80 (517)
.++.+|..+ +++|++|+|++| .++.++. .+..+++|++|+|++|.+....| .+..+++|++|+|++|. +..+|..
T Consensus 42 ~l~~lp~~~-~~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~l~~~ 118 (330)
T 1xku_A 42 GLEKVPKDL-PPDTALLDLQNN-KITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ-LKELPEK 118 (330)
T ss_dssp CCCSCCCSC-CTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC-CSBCCSS
T ss_pred CccccCccC-CCCCeEEECCCC-cCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCc-CCccChh
Confidence 355666555 356777777777 6776643 56677777777777776554445 36777777777777764 3455555
Q ss_pred ccCCCCCCEEeccCCcCccccCCCC-CCCCCcEEEEecCCCCC--ccCCC---CCCCcEEEeecccCcccCCcCCCCCCc
Q 043008 81 ITNFNHLSMLCFRHCKNLRHFPNNL-HFVCPIIIDFSYCVNLT--EFPQI---SGNIIDLILTETAIEEVPSSTECLTNL 154 (517)
Q Consensus 81 i~~l~~L~~L~L~~~~~l~~lp~~~-~l~sL~~L~L~~c~~l~--~~p~~---~~~L~~L~L~~~~i~~lp~~i~~l~~L 154 (517)
+. ++|++|++++|......+..+ ++++|+.|++++|.... ..+.. +.+|+.|++++|.++.+|..+. ++|
T Consensus 119 ~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~--~~L 194 (330)
T 1xku_A 119 MP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP--PSL 194 (330)
T ss_dssp CC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCC--TTC
T ss_pred hc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCcccc--ccC
Confidence 44 677777777765544333334 67777777777765432 22322 3456777777777777776554 677
Q ss_pred cEEEcccCcCCccccccccCCCCCcEEEcCCC-CCcCCc-cCCCCCCCCEEEecCCCCCcchhhhhcCCCCCEEeccCCC
Q 043008 155 QYLFLCSCKKLKRVSTSICKFKSLVWLSLNND-LTAIPQ-EIGCLSSLECLNLGGNNFEGLPASIKQISRLECLDLSYCN 232 (517)
Q Consensus 155 ~~L~l~~~~~l~~lp~~l~~l~~L~~L~Ls~~-l~~lp~-~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~c~ 232 (517)
+.|++++|.+.+..|..+..+++|+.|++++| +..++. .+..+++|++|+|++|+++.+|..+..+++|+.|++++ +
T Consensus 195 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~-N 273 (330)
T 1xku_A 195 TELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHN-N 273 (330)
T ss_dssp SEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCS-S
T ss_pred CEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChhhccCCCcCEEECCC-C
Confidence 77777777666666667777777777777654 344433 56667777777777777777777777777777777776 4
Q ss_pred CCCcCC
Q 043008 233 SLQSLP 238 (517)
Q Consensus 233 ~l~~lp 238 (517)
.++.+|
T Consensus 274 ~i~~~~ 279 (330)
T 1xku_A 274 NISAIG 279 (330)
T ss_dssp CCCCCC
T ss_pred cCCccC
Confidence 455554
No 10
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.92 E-value=2.2e-24 Score=217.34 Aligned_cols=227 Identities=15% Similarity=0.168 Sum_probs=128.0
Q ss_pred CCCCCCCCCCCCccEEeccCCCCCccc-cccCCCCCCccEEEccCCCCCCCCC-CCCCCCCccEEeeccccCCcccCccc
Q 043008 4 LRTLPSNFKPKNLVELNLPYGHKVVQI-WEGKKRAFKLKFINLSHSQCHIKIP-DPSETPNLERIDILNCTNPACVLSSI 81 (517)
Q Consensus 4 l~~lP~~f~~~~L~~L~L~~n~~l~~l-~~~~~~l~~L~~L~Ls~~~~l~~~p-~l~~l~~L~~L~L~~~~~l~~~p~si 81 (517)
++.+|..+ +++|++|+|++| .+..+ +..+..+++|++|+|++|.+....| .+.++++|++|+|++|. +..+|..+
T Consensus 45 l~~ip~~~-~~~l~~L~l~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~ 121 (332)
T 2ft3_A 45 LKAVPKEI-SPDTTLLDLQNN-DISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH-LVEIPPNL 121 (332)
T ss_dssp CSSCCSCC-CTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSC-CCSCCSSC
T ss_pred ccccCCCC-CCCCeEEECCCC-cCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCc-CCccCccc
Confidence 44555444 345666666666 55555 3355566666666666665443334 25566666666666653 33455444
Q ss_pred cCCCCCCEEeccCCcCccccCCCC-CCCCCcEEEEecCCCCC--ccCCCCC--CCcEEEeecccCcccCCcCCCCCCccE
Q 043008 82 TNFNHLSMLCFRHCKNLRHFPNNL-HFVCPIIIDFSYCVNLT--EFPQISG--NIIDLILTETAIEEVPSSTECLTNLQY 156 (517)
Q Consensus 82 ~~l~~L~~L~L~~~~~l~~lp~~~-~l~sL~~L~L~~c~~l~--~~p~~~~--~L~~L~L~~~~i~~lp~~i~~l~~L~~ 156 (517)
. ++|++|++++|......+..+ ++++|+.|++++|.... ..|..+. +|+.|++++|.++.+|..+. ++|+.
T Consensus 122 ~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~--~~L~~ 197 (332)
T 2ft3_A 122 P--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLP--ETLNE 197 (332)
T ss_dssp C--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSC--SSCSC
T ss_pred c--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccCcccc--CCCCE
Confidence 3 566666666654432222223 56666666666654321 2222222 45666666666666665443 56666
Q ss_pred EEcccCcCCccccccccCCCCCcEEEcCCC-CCcCCc-cCCCCCCCCEEEecCCCCCcchhhhhcCCCCCEEeccCCCCC
Q 043008 157 LFLCSCKKLKRVSTSICKFKSLVWLSLNND-LTAIPQ-EIGCLSSLECLNLGGNNFEGLPASIKQISRLECLDLSYCNSL 234 (517)
Q Consensus 157 L~l~~~~~l~~lp~~l~~l~~L~~L~Ls~~-l~~lp~-~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~c~~l 234 (517)
|++++|.+.+..+..+..+++|+.|++++| +..++. .+..+++|+.|+|++|+++.+|..+..+++|+.|++++ +.+
T Consensus 198 L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~-N~l 276 (332)
T 2ft3_A 198 LHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHT-NNI 276 (332)
T ss_dssp CBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCS-SCC
T ss_pred EECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCC-CCC
Confidence 666666665555566666666777776554 344433 46666677777777776666666666667777777765 345
Q ss_pred CcCC
Q 043008 235 QSLP 238 (517)
Q Consensus 235 ~~lp 238 (517)
+.+|
T Consensus 277 ~~~~ 280 (332)
T 2ft3_A 277 TKVG 280 (332)
T ss_dssp CBCC
T ss_pred CccC
Confidence 4444
No 11
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.92 E-value=2.5e-25 Score=222.63 Aligned_cols=225 Identities=16% Similarity=0.171 Sum_probs=192.7
Q ss_pred CCccEEeccCCCCCc---cccccCCCCCCccEEEccC-CCCCCCCCC-CCCCCCccEEeeccccCCcccCccccCCCCCC
Q 043008 14 KNLVELNLPYGHKVV---QIWEGKKRAFKLKFINLSH-SQCHIKIPD-PSETPNLERIDILNCTNPACVLSSITNFNHLS 88 (517)
Q Consensus 14 ~~L~~L~L~~n~~l~---~l~~~~~~l~~L~~L~Ls~-~~~l~~~p~-l~~l~~L~~L~L~~~~~l~~~p~si~~l~~L~ 88 (517)
.+++.|+|++| .+. .+|..+..+++|++|+|++ |.+...+|. +..+++|++|+|++|.....+|..++.+++|+
T Consensus 50 ~~l~~L~L~~~-~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSGL-NLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CCEEEEEEECC-CCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred ceEEEEECCCC-CccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence 68999999999 777 5789999999999999995 777777884 89999999999999987778999999999999
Q ss_pred EEeccCCcCccccCCCC-CCCCCcEEEEecCCCCCccCCCCC----CCcEEEeecccCc-ccCCcCCCCCCccEEEcccC
Q 043008 89 MLCFRHCKNLRHFPNNL-HFVCPIIIDFSYCVNLTEFPQISG----NIIDLILTETAIE-EVPSSTECLTNLQYLFLCSC 162 (517)
Q Consensus 89 ~L~L~~~~~l~~lp~~~-~l~sL~~L~L~~c~~l~~~p~~~~----~L~~L~L~~~~i~-~lp~~i~~l~~L~~L~l~~~ 162 (517)
+|++++|.....+|..+ .+++|++|++++|.....+|..+. +|+.|++++|.+. .+|..+..++ |+.|++++|
T Consensus 129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N 207 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRN 207 (313)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSS
T ss_pred EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCC
Confidence 99999998887888888 899999999999876657776543 6789999999998 7788888887 999999999
Q ss_pred cCCccccccccCCCCCcEEEcCCCC-CcCCccCCCCCCCCEEEecCCCCC-cchhhhhcCCCCCEEeccCCCCCCcCCCC
Q 043008 163 KKLKRVSTSICKFKSLVWLSLNNDL-TAIPQEIGCLSSLECLNLGGNNFE-GLPASIKQISRLECLDLSYCNSLQSLPEL 240 (517)
Q Consensus 163 ~~l~~lp~~l~~l~~L~~L~Ls~~l-~~lp~~l~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~c~~l~~lp~l 240 (517)
.+.+..|..+..+++|+.|++++|. ...+..+..+++|++|+|++|+++ .+|..+..+++|+.|+|++|+....+|..
T Consensus 208 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~ 287 (313)
T 1ogq_A 208 MLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG 287 (313)
T ss_dssp EEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS
T ss_pred cccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC
Confidence 8888888889999999999998764 445555888899999999999998 68889999999999999986555566654
No 12
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.92 E-value=4e-25 Score=248.11 Aligned_cols=278 Identities=16% Similarity=0.136 Sum_probs=228.1
Q ss_pred CCCCC-CCCCccEEeccCCCCCcc------------------ccccCC--CCCCccEEEccCCCCCCCCCC-CCCCCCcc
Q 043008 7 LPSNF-KPKNLVELNLPYGHKVVQ------------------IWEGKK--RAFKLKFINLSHSQCHIKIPD-PSETPNLE 64 (517)
Q Consensus 7 lP~~f-~~~~L~~L~L~~n~~l~~------------------l~~~~~--~l~~L~~L~Ls~~~~l~~~p~-l~~l~~L~ 64 (517)
+|..| ++++|++|+|++| .+.. +|..+. ++++|++|+|++|.+...+|. +.++++|+
T Consensus 440 IP~~l~~L~~L~~L~Ls~N-~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~ 518 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANS-PFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQ 518 (876)
T ss_dssp ECGGGGGCTTCCEEEEESC-CCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCC
T ss_pred hhHHHhcCCCCCEEECcCC-cCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCC
Confidence 78877 8999999999999 8887 899988 999999999999998999995 89999999
Q ss_pred EEeecccc-CCc-ccCccccCCC-------CCCEEeccCCcCccccCC--CC-CCCCCcEEEEecCCCCCccCCCCC---
Q 043008 65 RIDILNCT-NPA-CVLSSITNFN-------HLSMLCFRHCKNLRHFPN--NL-HFVCPIIIDFSYCVNLTEFPQISG--- 129 (517)
Q Consensus 65 ~L~L~~~~-~l~-~~p~si~~l~-------~L~~L~L~~~~~l~~lp~--~~-~l~sL~~L~L~~c~~l~~~p~~~~--- 129 (517)
.|+|++|. ... .+|..++.++ +|+.|+|++|... .+|. .+ ++++|+.|++++|... .+| .+.
T Consensus 519 ~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~ 595 (876)
T 4ecn_A 519 SLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNV 595 (876)
T ss_dssp EEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTS
T ss_pred EEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCC
Confidence 99999997 554 6887776655 9999999999877 8998 77 9999999999997654 888 444
Q ss_pred CCcEEEeecccCcccCCcCCCCCC-ccEEEcccCcCCccccccccCCCC--CcEEEcCCCC-Cc----CCccCC--CCCC
Q 043008 130 NIIDLILTETAIEEVPSSTECLTN-LQYLFLCSCKKLKRVSTSICKFKS--LVWLSLNNDL-TA----IPQEIG--CLSS 199 (517)
Q Consensus 130 ~L~~L~L~~~~i~~lp~~i~~l~~-L~~L~l~~~~~l~~lp~~l~~l~~--L~~L~Ls~~l-~~----lp~~l~--~l~~ 199 (517)
+|+.|+|++|.+..+|..+..+++ |+.|++++|.+. .+|..+..++. |+.|++++|. .. ++..+. .+++
T Consensus 596 ~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~ 674 (876)
T 4ecn_A 596 KLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGIN 674 (876)
T ss_dssp EESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCC
T ss_pred cceEEECcCCccccchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCC
Confidence 469999999999999999999999 999999999866 88888877755 9999998763 22 223333 4458
Q ss_pred CCEEEecCCCCCcchhhhh-cCCCCCEEeccCCCCCCcCCCCC-C----------CccEEecccccCcCcCCCCCchhh-
Q 043008 200 LECLNLGGNNFEGLPASIK-QISRLECLDLSYCNSLQSLPELP-L----------HLEVLLATNCKRLQSLPEIPSCLE- 266 (517)
Q Consensus 200 L~~L~Ls~n~l~~lp~~l~-~l~~L~~L~L~~c~~l~~lp~l~-~----------~L~~L~~~~c~~l~~l~~~~~~L~- 266 (517)
|+.|+|++|+++.+|..+. .+++|+.|+|++| .+..+|... . +|+.|++.++ .+. ..|..+.
T Consensus 675 L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N-~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N-~L~---~lp~~l~~ 749 (876)
T 4ecn_A 675 ASTVTLSYNEIQKFPTELFATGSPISTIILSNN-LMTSIPENSLKPKDGNYKNTYLLTTIDLRFN-KLT---SLSDDFRA 749 (876)
T ss_dssp EEEEECCSSCCCSCCHHHHHTTCCCSEEECCSC-CCSCCCTTSSSCTTSCCTTGGGCCEEECCSS-CCC---CCCGGGST
T ss_pred cCEEEccCCcCCccCHHHHccCCCCCEEECCCC-cCCccChHHhccccccccccCCccEEECCCC-CCc---cchHHhhh
Confidence 9999999999999998765 8999999999984 667888632 1 7888988876 333 5567776
Q ss_pred -hcchhhHHhhhcCCCCCcceeeeeEEeeeCCCCc
Q 043008 267 -ELDASVLEKLSKHSFGEEYRIWSIKFNFTNCLKL 300 (517)
Q Consensus 267 -~L~~l~~~~Ls~n~~~~~~~l~~l~~~~~nC~kL 300 (517)
.++.+..++|++|.+++. +..+.++.+|
T Consensus 750 ~~l~~L~~L~Ls~N~L~~l------p~~l~~L~~L 778 (876)
T 4ecn_A 750 TTLPYLSNMDVSYNCFSSF------PTQPLNSSQL 778 (876)
T ss_dssp TTCTTCCEEECCSSCCSSC------CCGGGGCTTC
T ss_pred ccCCCcCEEEeCCCCCCcc------chhhhcCCCC
Confidence 888899999999998752 2234555555
No 13
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.92 E-value=9.8e-24 Score=227.89 Aligned_cols=271 Identities=16% Similarity=0.112 Sum_probs=167.7
Q ss_pred CCCCCCCCCCCCCccEEeccCCCCCcccc-ccCCCCCCccEEEccCCCCCCCCCC-CCCCCCccEEeeccccCCcccCcc
Q 043008 3 PLRTLPSNFKPKNLVELNLPYGHKVVQIW-EGKKRAFKLKFINLSHSQCHIKIPD-PSETPNLERIDILNCTNPACVLSS 80 (517)
Q Consensus 3 pl~~lP~~f~~~~L~~L~L~~n~~l~~l~-~~~~~l~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~~~~l~~~p~s 80 (517)
-++.+|..+ +++|++|+|++| .+..++ ..+..+++|++|+|++|.+....|+ |.++++|++|+|++|. +..+|..
T Consensus 42 ~L~~ip~~~-~~~L~~L~Ls~N-~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~ 118 (562)
T 3a79_B 42 NLTHVPKDL-PPRTKALSLSQN-SISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNR-LQNISCC 118 (562)
T ss_dssp CCCSCCTTS-CTTCCEEECCSS-CCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSC-CCEECSC
T ss_pred CCccCCCCC-CCCcCEEECCCC-CccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCc-CCccCcc
Confidence 456677655 367777777777 777664 5677777777777777775554453 7777777777777764 3456655
Q ss_pred ccCCCCCCEEeccCCcCcc-ccCCCC-CCCCCcEEEEecCCCCCccCCCCC-----------------------------
Q 043008 81 ITNFNHLSMLCFRHCKNLR-HFPNNL-HFVCPIIIDFSYCVNLTEFPQISG----------------------------- 129 (517)
Q Consensus 81 i~~l~~L~~L~L~~~~~l~-~lp~~~-~l~sL~~L~L~~c~~l~~~p~~~~----------------------------- 129 (517)
.+++|++|++++|.... ..|..+ ++++|++|++++|.....-...+.
T Consensus 119 --~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~ 196 (562)
T 3a79_B 119 --PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNT 196 (562)
T ss_dssp --CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTTTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCE
T ss_pred --ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCchhhhhhceeeEEEeecccccccccCcccccccCc
Confidence 67777777777766543 233455 666666666666542211111111
Q ss_pred --------------------------------------------------------------------------------
Q 043008 130 -------------------------------------------------------------------------------- 129 (517)
Q Consensus 130 -------------------------------------------------------------------------------- 129 (517)
T Consensus 197 ~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~ 276 (562)
T 3a79_B 197 TVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPR 276 (562)
T ss_dssp EEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTS
T ss_pred ceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcc
Confidence
Q ss_pred CCcEEEeecccCc-ccCCcC-----------------------------------------------------CCCCCcc
Q 043008 130 NIIDLILTETAIE-EVPSST-----------------------------------------------------ECLTNLQ 155 (517)
Q Consensus 130 ~L~~L~L~~~~i~-~lp~~i-----------------------------------------------------~~l~~L~ 155 (517)
+|++|++++|.+. .+|..+ ..+++|+
T Consensus 277 ~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~ 356 (562)
T 3a79_B 277 PVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFT 356 (562)
T ss_dssp SEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCC
T ss_pred cccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCce
Confidence 3344444444444 444433 4566777
Q ss_pred EEEcccCcCCccccccccCCCCCcEEEcCCC-CCcC---CccCCCCCCCCEEEecCCCCCc-chhh-hhcCCCCCEEecc
Q 043008 156 YLFLCSCKKLKRVSTSICKFKSLVWLSLNND-LTAI---PQEIGCLSSLECLNLGGNNFEG-LPAS-IKQISRLECLDLS 229 (517)
Q Consensus 156 ~L~l~~~~~l~~lp~~l~~l~~L~~L~Ls~~-l~~l---p~~l~~l~~L~~L~Ls~n~l~~-lp~~-l~~l~~L~~L~L~ 229 (517)
+|++++|.+.+..|..+..+++|+.|++++| +..+ |..+..+++|++|++++|+++. +|.. +..+++|+.|+++
T Consensus 357 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~ 436 (562)
T 3a79_B 357 FLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLS 436 (562)
T ss_dssp EEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECC
T ss_pred EEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECC
Confidence 7777777666666777777777777777654 3333 3456777777777777777775 6643 5566777777777
Q ss_pred CCCCCCcCCCC-CCCccEEecccccCcCcCCCCCchhhhcchhhHHhhhcCCCC
Q 043008 230 YCNSLQSLPEL-PLHLEVLLATNCKRLQSLPEIPSCLEELDASVLEKLSKHSFG 282 (517)
Q Consensus 230 ~c~~l~~lp~l-~~~L~~L~~~~c~~l~~l~~~~~~L~~L~~l~~~~Ls~n~~~ 282 (517)
+|+....+|.. +++|+.|++.++ .++ ..|..+..++.++.++|++|.++
T Consensus 437 ~n~l~~~~~~~l~~~L~~L~L~~N-~l~---~ip~~~~~l~~L~~L~L~~N~l~ 486 (562)
T 3a79_B 437 SNMLTGSVFRCLPPKVKVLDLHNN-RIM---SIPKDVTHLQALQELNVASNQLK 486 (562)
T ss_dssp SSCCCGGGGSSCCTTCSEEECCSS-CCC---CCCTTTTSSCCCSEEECCSSCCC
T ss_pred CCCCCcchhhhhcCcCCEEECCCC-cCc---ccChhhcCCCCCCEEECCCCCCC
Confidence 65544444443 257777777665 333 34445556777777777777766
No 14
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.92 E-value=1.3e-23 Score=212.61 Aligned_cols=270 Identities=17% Similarity=0.185 Sum_probs=192.9
Q ss_pred CCCCCCCCCCCCCCccEEeccCCCCCccccccCCCCCCccEEEccCCCCCCCCCCCCCCCCccEEeeccccCCcccCccc
Q 043008 2 YPLRTLPSNFKPKNLVELNLPYGHKVVQIWEGKKRAFKLKFINLSHSQCHIKIPDPSETPNLERIDILNCTNPACVLSSI 81 (517)
Q Consensus 2 ~pl~~lP~~f~~~~L~~L~L~~n~~l~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~~~~l~~~p~si 81 (517)
..+..+|....+++|++|++++| .+..++. +..+++|++|+|++|. +..+|.+..+++|++|++++|.. ..++. +
T Consensus 54 ~~i~~~~~~~~~~~L~~L~l~~n-~i~~~~~-~~~l~~L~~L~L~~n~-i~~~~~~~~l~~L~~L~l~~n~i-~~~~~-~ 128 (347)
T 4fmz_A 54 EKVASIQGIEYLTNLEYLNLNGN-QITDISP-LSNLVKLTNLYIGTNK-ITDISALQNLTNLRELYLNEDNI-SDISP-L 128 (347)
T ss_dssp SCCCCCTTGGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSC-CCCCGGGTTCTTCSEEECTTSCC-CCCGG-G
T ss_pred CccccchhhhhcCCccEEEccCC-ccccchh-hhcCCcCCEEEccCCc-ccCchHHcCCCcCCEEECcCCcc-cCchh-h
Confidence 34556665336778888888888 7777765 7778888888888876 45566777888888888887753 34444 7
Q ss_pred cCCCCCCEEeccCCcCccccCCCCCCCCCcEEEEecCCCCCccC-CCCCCCcEEEeecccCcccCCcCCCCCCccEEEcc
Q 043008 82 TNFNHLSMLCFRHCKNLRHFPNNLHFVCPIIIDFSYCVNLTEFP-QISGNIIDLILTETAIEEVPSSTECLTNLQYLFLC 160 (517)
Q Consensus 82 ~~l~~L~~L~L~~~~~l~~lp~~~~l~sL~~L~L~~c~~l~~~p-~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~ 160 (517)
..+++|++|++++|.....++..-.+++|++|++++|......+ ..+.+|+.|++++|.+..++. +..+++|+.|+++
T Consensus 129 ~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~ 207 (347)
T 4fmz_A 129 ANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISP-LASLTSLHYFTAY 207 (347)
T ss_dssp TTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECTTSCCCCCGG-GGGCTTCCEEECC
T ss_pred ccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchhhccCCCCCEEEccCCccccccc-ccCCCccceeecc
Confidence 77888888888888766665552278888888888865433221 234567888888888887766 7778888888888
Q ss_pred cCcCCccccccccCCCCCcEEEcCCC-CCcCCccCCCCCCCCEEEecCCCCCcchhhhhcCCCCCEEeccCCCCCCcCCC
Q 043008 161 SCKKLKRVSTSICKFKSLVWLSLNND-LTAIPQEIGCLSSLECLNLGGNNFEGLPASIKQISRLECLDLSYCNSLQSLPE 239 (517)
Q Consensus 161 ~~~~l~~lp~~l~~l~~L~~L~Ls~~-l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~ 239 (517)
+|......+ +..+++|+.|+++++ +..++. +..+++|++|++++|.++.++ .+..+++|+.|++++| .++.++.
T Consensus 208 ~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~~n-~l~~~~~ 282 (347)
T 4fmz_A 208 VNQITDITP--VANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQISDIN-AVKDLTKLKMLNVGSN-QISDISV 282 (347)
T ss_dssp SSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSS-CCCCCGG
T ss_pred cCCCCCCch--hhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCCccCCCh-hHhcCCCcCEEEccCC-ccCCChh
Confidence 876655443 778888888888765 455555 778888888888888888875 6788888888888875 5666654
Q ss_pred C--CCCccEEecccccCcCcCCCCCchhhhcchhhHHhhhcCCCCCcc
Q 043008 240 L--PLHLEVLLATNCKRLQSLPEIPSCLEELDASVLEKLSKHSFGEEY 285 (517)
Q Consensus 240 l--~~~L~~L~~~~c~~l~~l~~~~~~L~~L~~l~~~~Ls~n~~~~~~ 285 (517)
+ .++|+.|++.+|. .....+..+..++.++.++|++|++++..
T Consensus 283 ~~~l~~L~~L~L~~n~---l~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 327 (347)
T 4fmz_A 283 LNNLSQLNSLFLNNNQ---LGNEDMEVIGGLTNLTTLFLSQNHITDIR 327 (347)
T ss_dssp GGGCTTCSEEECCSSC---CCGGGHHHHHTCTTCSEEECCSSSCCCCG
T ss_pred hcCCCCCCEEECcCCc---CCCcChhHhhccccCCEEEccCCcccccc
Confidence 3 3678888877763 22234566777888888888888877544
No 15
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.92 E-value=4e-24 Score=228.52 Aligned_cols=130 Identities=17% Similarity=0.132 Sum_probs=72.8
Q ss_pred CCCCccEEEcccCcCCccccccccCCCCCcEEEcCCC-CC---cCCccCCCCCCCCEEEecCCCCCc-chhh-hhcCCCC
Q 043008 150 CLTNLQYLFLCSCKKLKRVSTSICKFKSLVWLSLNND-LT---AIPQEIGCLSSLECLNLGGNNFEG-LPAS-IKQISRL 223 (517)
Q Consensus 150 ~l~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~Ls~~-l~---~lp~~l~~l~~L~~L~Ls~n~l~~-lp~~-l~~l~~L 223 (517)
.+++|++|++++|.+.+..|..+..+++|+.|++++| +. .+|..+..+++|++|+|++|.++. +|.. +..+++|
T Consensus 322 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L 401 (520)
T 2z7x_B 322 KISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSL 401 (520)
T ss_dssp SCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTC
T ss_pred hCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccC
Confidence 4445555555555555545555555555555555443 22 233445555555555555555554 5543 4455555
Q ss_pred CEEeccCCCCCCcCCCC-CCCccEEecccccCcCcCCCCCchhhhcchhhHHhhhcCCCCC
Q 043008 224 ECLDLSYCNSLQSLPEL-PLHLEVLLATNCKRLQSLPEIPSCLEELDASVLEKLSKHSFGE 283 (517)
Q Consensus 224 ~~L~L~~c~~l~~lp~l-~~~L~~L~~~~c~~l~~l~~~~~~L~~L~~l~~~~Ls~n~~~~ 283 (517)
+.|++++|+....+|.. +++|+.|++.++. +...|..+..++.++.++|++|.++.
T Consensus 402 ~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~----l~~ip~~~~~l~~L~~L~L~~N~l~~ 458 (520)
T 2z7x_B 402 LSLNMSSNILTDTIFRCLPPRIKVLDLHSNK----IKSIPKQVVKLEALQELNVASNQLKS 458 (520)
T ss_dssp CEEECCSSCCCGGGGGSCCTTCCEEECCSSC----CCCCCGGGGGCTTCCEEECCSSCCCC
T ss_pred CEEECcCCCCCcchhhhhcccCCEEECCCCc----ccccchhhhcCCCCCEEECCCCcCCc
Confidence 56665554433333332 2566666666542 23556666788888888888888763
No 16
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.92 E-value=9.9e-24 Score=217.29 Aligned_cols=268 Identities=16% Similarity=0.105 Sum_probs=195.7
Q ss_pred CCCCCCC-C-CCCCccEEeccCCCCCcccc-ccCCCCCCccEEEccCCCCCCCCCC-CCCCCCccEEeeccccCCcccCc
Q 043008 4 LRTLPSN-F-KPKNLVELNLPYGHKVVQIW-EGKKRAFKLKFINLSHSQCHIKIPD-PSETPNLERIDILNCTNPACVLS 79 (517)
Q Consensus 4 l~~lP~~-f-~~~~L~~L~L~~n~~l~~l~-~~~~~l~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~~~~l~~~p~ 79 (517)
++.+|.. | .+++|++|+|++| .+..++ ..+..+++|++|+|++|.+....|. +.++++|++|+|++|... .+|.
T Consensus 57 l~~l~~~~~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~ 134 (390)
T 3o6n_A 57 MRKLPAALLDSFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPR 134 (390)
T ss_dssp ESEECTHHHHHCCCCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCT
T ss_pred hhhCChhHhcccccCcEEECCCC-cccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccC-cCCH
Confidence 4556665 3 6788888888888 787774 4778888888888888885555554 788888888888887544 5555
Q ss_pred c-ccCCCCCCEEeccCCcCccccCCCC-CCCCCcEEEEecCCCCCccCCCCCC-------------------CcEEEeec
Q 043008 80 S-ITNFNHLSMLCFRHCKNLRHFPNNL-HFVCPIIIDFSYCVNLTEFPQISGN-------------------IIDLILTE 138 (517)
Q Consensus 80 s-i~~l~~L~~L~L~~~~~l~~lp~~~-~l~sL~~L~L~~c~~l~~~p~~~~~-------------------L~~L~L~~ 138 (517)
. ++.+++|++|++++|......|..+ .+++|++|++++|.....-...+.+ ++.|++++
T Consensus 135 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~ 214 (390)
T 3o6n_A 135 GIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASH 214 (390)
T ss_dssp TTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCS
T ss_pred HHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccccCCCCcceEEECCC
Confidence 4 5788888888888887665555556 7888888888886543221122333 44555555
Q ss_pred ccCcccCCcCCCCCCccEEEcccCcCCccccccccCCCCCcEEEcCCCC-Cc-CCccCCCCCCCCEEEecCCCCCcchhh
Q 043008 139 TAIEEVPSSTECLTNLQYLFLCSCKKLKRVSTSICKFKSLVWLSLNNDL-TA-IPQEIGCLSSLECLNLGGNNFEGLPAS 216 (517)
Q Consensus 139 ~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~Ls~~l-~~-lp~~l~~l~~L~~L~Ls~n~l~~lp~~ 216 (517)
|.+..+|.. ..++|+.|++++|.+.+. ..+..+++|+.|++++|. .. .|..+..+++|++|+|++|+++.+|..
T Consensus 215 n~l~~~~~~--~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 290 (390)
T 3o6n_A 215 NSINVVRGP--VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLY 290 (390)
T ss_dssp SCCCEEECC--CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEECS
T ss_pred Ceeeecccc--ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccCcc
Confidence 555555432 246788888888876653 568899999999998764 44 477899999999999999999999988
Q ss_pred hhcCCCCCEEeccCCCCCCcCCCC---CCCccEEecccccCcCcCCCCCchhhhcchhhHHhhhcCCCCCc
Q 043008 217 IKQISRLECLDLSYCNSLQSLPEL---PLHLEVLLATNCKRLQSLPEIPSCLEELDASVLEKLSKHSFGEE 284 (517)
Q Consensus 217 l~~l~~L~~L~L~~c~~l~~lp~l---~~~L~~L~~~~c~~l~~l~~~~~~L~~L~~l~~~~Ls~n~~~~~ 284 (517)
+..+++|+.|+|++| .++.+|.. .++|+.|++.++. +..++ +..++.+..+++++|++.+.
T Consensus 291 ~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~N~-i~~~~-----~~~~~~L~~L~l~~N~~~~~ 354 (390)
T 3o6n_A 291 GQPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDHNS-IVTLK-----LSTHHTLKNLTLSHNDWDCN 354 (390)
T ss_dssp SSCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEECCSSC-CCCCC-----CCTTCCCSEEECCSSCEEHH
T ss_pred cCCCCCCCEEECCCC-cceecCccccccCcCCEEECCCCc-cceeC-----chhhccCCEEEcCCCCccch
Confidence 889999999999985 67777753 3688889888754 33332 55667777889999997643
No 17
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.91 E-value=8.8e-24 Score=230.03 Aligned_cols=133 Identities=15% Similarity=0.105 Sum_probs=79.9
Q ss_pred cCCCCCCccEEEcccCcCCccccccccCCCCCcEEEcCCCC-CcC-C-ccCCCCCCCCEEEecCCCCCc-chhhhhcCCC
Q 043008 147 STECLTNLQYLFLCSCKKLKRVSTSICKFKSLVWLSLNNDL-TAI-P-QEIGCLSSLECLNLGGNNFEG-LPASIKQISR 222 (517)
Q Consensus 147 ~i~~l~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~Ls~~l-~~l-p-~~l~~l~~L~~L~Ls~n~l~~-lp~~l~~l~~ 222 (517)
.+..+++|+.|++++|.. ..+|..+..+++|+.|++++|. ..+ | ..+..+++|++|++++|.+.. .|..+..+++
T Consensus 371 ~~~~~~~L~~L~L~~n~l-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 449 (606)
T 3vq2_A 371 SDLGTNSLRHLDLSFNGA-IIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTS 449 (606)
T ss_dssp HHHCCSCCCEEECCSCSE-EEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTT
T ss_pred hhccCCcccEeECCCCcc-ccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCC
Confidence 334445555555555542 3356677778888888887653 333 3 356777777777777777765 5666777777
Q ss_pred CCEEeccCCCCCCc-CCCCC---CCccEEecccccCcCcCCCCCchhhhcchhhHHhhhcCCCCC
Q 043008 223 LECLDLSYCNSLQS-LPELP---LHLEVLLATNCKRLQSLPEIPSCLEELDASVLEKLSKHSFGE 283 (517)
Q Consensus 223 L~~L~L~~c~~l~~-lp~l~---~~L~~L~~~~c~~l~~l~~~~~~L~~L~~l~~~~Ls~n~~~~ 283 (517)
|+.|++++|+.... +|..+ ++|+.|++.+|. .....|..+..++.++.++|++|.+++
T Consensus 450 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~---l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 511 (606)
T 3vq2_A 450 LNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQ---LEQISWGVFDTLHRLQLLNMSHNNLLF 511 (606)
T ss_dssp CCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC---CCEECTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCEEECCCCcCCCcchHHhhccCCCCCEEECCCCc---CCccChhhhcccccCCEEECCCCcCCC
Confidence 77777776544332 45433 456666665542 222334556666666666677666653
No 18
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.91 E-value=1.2e-24 Score=238.56 Aligned_cols=271 Identities=16% Similarity=0.171 Sum_probs=215.2
Q ss_pred CCCCCCC-CCCCccEEeccCCCC-Cc--cccccCCCC------CCccEEEccCCCCCCCCCC---CCCCCCccEEeeccc
Q 043008 5 RTLPSNF-KPKNLVELNLPYGHK-VV--QIWEGKKRA------FKLKFINLSHSQCHIKIPD---PSETPNLERIDILNC 71 (517)
Q Consensus 5 ~~lP~~f-~~~~L~~L~L~~n~~-l~--~l~~~~~~l------~~L~~L~Ls~~~~l~~~p~---l~~l~~L~~L~L~~~ 71 (517)
..+|..| ++++|++|+|++| . +. .+|..+..+ ++|++|+|++|.+. .+|. ++.+++|++|++++|
T Consensus 263 ~~~p~~l~~l~~L~~L~Ls~n-~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N 340 (636)
T 4eco_A 263 TKLPTFLKALPEMQLINVACN-RGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYN 340 (636)
T ss_dssp SSCCTTTTTCSSCCEEECTTC-TTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSC
T ss_pred ccChHHHhcCCCCCEEECcCC-CCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCC
Confidence 4678776 8999999999999 6 77 478777665 99999999999865 7886 889999999999999
Q ss_pred cCCcccCccccCCCCCCEEeccCCcCccccCCCC-CCCC-CcEEEEecCCCCCccCCCCC-----CCcEEEeecccCc-c
Q 043008 72 TNPACVLSSITNFNHLSMLCFRHCKNLRHFPNNL-HFVC-PIIIDFSYCVNLTEFPQISG-----NIIDLILTETAIE-E 143 (517)
Q Consensus 72 ~~l~~~p~si~~l~~L~~L~L~~~~~l~~lp~~~-~l~s-L~~L~L~~c~~l~~~p~~~~-----~L~~L~L~~~~i~-~ 143 (517)
...+.+| .++.+++|++|++++|... .+|..+ ++++ |+.|++++|. +..+|..+. +|+.|++++|.+. .
T Consensus 341 ~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~-l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~ 417 (636)
T 4eco_A 341 QLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNK-LKYIPNIFDAKSVSVMSAIDFSYNEIGSV 417 (636)
T ss_dssp CCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSC-CSSCCSCCCTTCSSCEEEEECCSSCTTTT
T ss_pred cCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCc-CcccchhhhhcccCccCEEECcCCcCCCc
Confidence 7766888 8999999999999998765 888888 8888 9999999976 447887643 5788999999988 4
Q ss_pred cCCcCC-------CCCCccEEEcccCcCCcccccc-ccCCCCCcEEEcCCC-CCcCCccCCC--------CCCCCEEEec
Q 043008 144 VPSSTE-------CLTNLQYLFLCSCKKLKRVSTS-ICKFKSLVWLSLNND-LTAIPQEIGC--------LSSLECLNLG 206 (517)
Q Consensus 144 lp~~i~-------~l~~L~~L~l~~~~~l~~lp~~-l~~l~~L~~L~Ls~~-l~~lp~~l~~--------l~~L~~L~Ls 206 (517)
+|..+. .+++|+.|++++|.+. .+|.. +..+++|+.|++++| +..+|..+.. +++|+.|+|+
T Consensus 418 ~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls 496 (636)
T 4eco_A 418 DGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLR 496 (636)
T ss_dssp TTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECC
T ss_pred chhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECc
Confidence 666677 7789999999998776 45544 456899999999764 4667765432 2389999999
Q ss_pred CCCCCcchhhhh--cCCCCCEEeccCCCCCCcCCCCC---CCccEEeccccc---CcCcCCCCCchhhhcchhhHHhhhc
Q 043008 207 GNNFEGLPASIK--QISRLECLDLSYCNSLQSLPELP---LHLEVLLATNCK---RLQSLPEIPSCLEELDASVLEKLSK 278 (517)
Q Consensus 207 ~n~l~~lp~~l~--~l~~L~~L~L~~c~~l~~lp~l~---~~L~~L~~~~c~---~l~~l~~~~~~L~~L~~l~~~~Ls~ 278 (517)
+|+++.+|..+. .+++|+.|+|++| .++.+|... ++|+.|++.++. .+......|..+..++.++.++|++
T Consensus 497 ~N~l~~lp~~~~~~~l~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~ 575 (636)
T 4eco_A 497 FNKLTKLSDDFRATTLPYLVGIDLSYN-SFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGS 575 (636)
T ss_dssp SSCCCBCCGGGSTTTCTTCCEEECCSS-CCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCS
T ss_pred CCcCCccChhhhhccCCCcCEEECCCC-CCCCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCC
Confidence 999999998887 8999999999974 555577643 577777776544 3445566778888888888888988
Q ss_pred CCCC
Q 043008 279 HSFG 282 (517)
Q Consensus 279 n~~~ 282 (517)
|.++
T Consensus 576 N~l~ 579 (636)
T 4eco_A 576 NDIR 579 (636)
T ss_dssp SCCC
T ss_pred CcCC
Confidence 8875
No 19
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.91 E-value=8.5e-24 Score=212.96 Aligned_cols=207 Identities=23% Similarity=0.258 Sum_probs=181.6
Q ss_pred CCCccEEEccCCCCCCCCC-CCCCCCCccEEeeccccCCcccCccccCCCCCCEEeccCCcCccccCCCC-CCCCCcEEE
Q 043008 37 AFKLKFINLSHSQCHIKIP-DPSETPNLERIDILNCTNPACVLSSITNFNHLSMLCFRHCKNLRHFPNNL-HFVCPIIID 114 (517)
Q Consensus 37 l~~L~~L~Ls~~~~l~~~p-~l~~l~~L~~L~L~~~~~l~~~p~si~~l~~L~~L~L~~~~~l~~lp~~~-~l~sL~~L~ 114 (517)
..+++.|+|++|.+ ..+| .+..+++|++|+|++|... .+|..++.+++|++|+|++|... .+|..+ ++++|++|+
T Consensus 80 ~~~l~~L~L~~n~l-~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 80 QPGRVALELRSVPL-PQFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS 156 (328)
T ss_dssp STTCCEEEEESSCC-SSCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred ccceeEEEccCCCc-hhcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence 47899999999985 4777 4888999999999999655 89999999999999999999766 889888 999999999
Q ss_pred EecCCCCCccCCC------------CCCCcEEEeecccCcccCCcCCCCCCccEEEcccCcCCccccccccCCCCCcEEE
Q 043008 115 FSYCVNLTEFPQI------------SGNIIDLILTETAIEEVPSSTECLTNLQYLFLCSCKKLKRVSTSICKFKSLVWLS 182 (517)
Q Consensus 115 L~~c~~l~~~p~~------------~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~ 182 (517)
+++|+.++.+|.. +.+|+.|++++|.++.+|..+..+++|+.|++++|.+. .+|..+..+++|+.|+
T Consensus 157 L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~ 235 (328)
T 4fcg_A 157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELD 235 (328)
T ss_dssp EEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCC-CCCGGGGGCTTCCEEE
T ss_pred CCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCC-cCchhhccCCCCCEEE
Confidence 9999999999875 45689999999999999999999999999999999776 4677899999999999
Q ss_pred cCCC--CCcCCccCCCCCCCCEEEecCCCCC-cchhhhhcCCCCCEEeccCCCCCCcCCCCCCCccEE
Q 043008 183 LNND--LTAIPQEIGCLSSLECLNLGGNNFE-GLPASIKQISRLECLDLSYCNSLQSLPELPLHLEVL 247 (517)
Q Consensus 183 Ls~~--l~~lp~~l~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~c~~l~~lp~l~~~L~~L 247 (517)
+++| .+.+|..++.+++|++|+|++|++. .+|..+..+++|+.|+|++|+.++.+|+....|..|
T Consensus 236 Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L 303 (328)
T 4fcg_A 236 LRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPAN 303 (328)
T ss_dssp CTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTT
T ss_pred CcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCc
Confidence 9874 3678888999999999999998765 689899999999999999999999888766544443
No 20
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.91 E-value=1.2e-23 Score=228.81 Aligned_cols=268 Identities=16% Similarity=0.107 Sum_probs=189.7
Q ss_pred CCCCCCC-C-CCCCccEEeccCCCCCcccc-ccCCCCCCccEEEccCCCCCCCCCC-CCCCCCccEEeeccccCCcccCc
Q 043008 4 LRTLPSN-F-KPKNLVELNLPYGHKVVQIW-EGKKRAFKLKFINLSHSQCHIKIPD-PSETPNLERIDILNCTNPACVLS 79 (517)
Q Consensus 4 l~~lP~~-f-~~~~L~~L~L~~n~~l~~l~-~~~~~l~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~~~~l~~~p~ 79 (517)
+..+|.. | .+++|++|+|++| .+..++ ..+..+++|++|+|++|.+....|. |+++++|++|+|++|... .+|.
T Consensus 63 l~~lp~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~ 140 (597)
T 3oja_B 63 MRKLPAALLDSFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPR 140 (597)
T ss_dssp ESEECTHHHHHCCCCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCT
T ss_pred CCCcCHHHHccCCCCcEEECCCC-CCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCC-CCCH
Confidence 4556665 3 6788999999988 888774 4788889999999999886555554 688899999999988554 4554
Q ss_pred c-ccCCCCCCEEeccCCcCccccCCCC-CCCCCcEEEEecCCCCCccCCCCCCC-------------------cEEEeec
Q 043008 80 S-ITNFNHLSMLCFRHCKNLRHFPNNL-HFVCPIIIDFSYCVNLTEFPQISGNI-------------------IDLILTE 138 (517)
Q Consensus 80 s-i~~l~~L~~L~L~~~~~l~~lp~~~-~l~sL~~L~L~~c~~l~~~p~~~~~L-------------------~~L~L~~ 138 (517)
. ++++++|++|+|++|......|..+ .+++|++|++++|.....-+..+.+| +.|++++
T Consensus 141 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~ 220 (597)
T 3oja_B 141 GIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASH 220 (597)
T ss_dssp TTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCS
T ss_pred HHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhheeeccC
Confidence 4 5888999999999987766666667 88889999998875433222233344 4444444
Q ss_pred ccCcccCCcCCCCCCccEEEcccCcCCccccccccCCCCCcEEEcCCCC-Cc-CCccCCCCCCCCEEEecCCCCCcchhh
Q 043008 139 TAIEEVPSSTECLTNLQYLFLCSCKKLKRVSTSICKFKSLVWLSLNNDL-TA-IPQEIGCLSSLECLNLGGNNFEGLPAS 216 (517)
Q Consensus 139 ~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~Ls~~l-~~-lp~~l~~l~~L~~L~Ls~n~l~~lp~~ 216 (517)
|.+..+|..+ .++|+.|++++|.+.+ +..+..+++|+.|++++|. .. .|..+..+++|+.|+|++|.++.+|..
T Consensus 221 n~l~~~~~~~--~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~ 296 (597)
T 3oja_B 221 NSINVVRGPV--NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLY 296 (597)
T ss_dssp SCCCEEECSC--CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEECS
T ss_pred Cccccccccc--CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCcc
Confidence 4444444332 2567777777776655 3567888888888887753 33 466788888888888888888888887
Q ss_pred hhcCCCCCEEeccCCCCCCcCCCC---CCCccEEecccccCcCcCCCCCchhhhcchhhHHhhhcCCCCCc
Q 043008 217 IKQISRLECLDLSYCNSLQSLPEL---PLHLEVLLATNCKRLQSLPEIPSCLEELDASVLEKLSKHSFGEE 284 (517)
Q Consensus 217 l~~l~~L~~L~L~~c~~l~~lp~l---~~~L~~L~~~~c~~l~~l~~~~~~L~~L~~l~~~~Ls~n~~~~~ 284 (517)
+..+++|+.|+|++| .+..+|.. .++|+.|++.++. +..++ +..++.+..++|++|++.+.
T Consensus 297 ~~~l~~L~~L~Ls~N-~l~~i~~~~~~l~~L~~L~L~~N~-l~~~~-----~~~~~~L~~L~l~~N~~~~~ 360 (597)
T 3oja_B 297 GQPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDHNS-IVTLK-----LSTHHTLKNLTLSHNDWDCN 360 (597)
T ss_dssp SSCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEECCSSC-CCCCC-----CCTTCCCSEEECCSSCEEHH
T ss_pred cccCCCCcEEECCCC-CCCccCcccccCCCCCEEECCCCC-CCCcC-----hhhcCCCCEEEeeCCCCCCh
Confidence 778888888888874 55667653 3677888877754 22221 44556667778888887643
No 21
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.91 E-value=7.9e-24 Score=237.60 Aligned_cols=271 Identities=16% Similarity=0.195 Sum_probs=199.4
Q ss_pred CCCCCCCC-CCCCccEEeccCCCC-Ccc--ccccCC-------CCCCccEEEccCCCCCCCCCC---CCCCCCccEEeec
Q 043008 4 LRTLPSNF-KPKNLVELNLPYGHK-VVQ--IWEGKK-------RAFKLKFINLSHSQCHIKIPD---PSETPNLERIDIL 69 (517)
Q Consensus 4 l~~lP~~f-~~~~L~~L~L~~n~~-l~~--l~~~~~-------~l~~L~~L~Ls~~~~l~~~p~---l~~l~~L~~L~L~ 69 (517)
...+|..| ++++|++|+|++| . +.. +|..+. .+++|+.|+|++|.+. .+|. ++++++|+.|+|+
T Consensus 504 ~~~iP~~l~~L~~L~~L~Ls~N-~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls 581 (876)
T 4ecn_A 504 MTQLPDFLYDLPELQSLNIACN-RGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCV 581 (876)
T ss_dssp CCSCCGGGGGCSSCCEEECTTC-TTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECT
T ss_pred CccChHHHhCCCCCCEEECcCC-CCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECC
Confidence 34677666 8889999999988 6 663 665444 4458999999998865 7776 7888899999998
Q ss_pred cccCCcccCccccCCCCCCEEeccCCcCccccCCCC-CCCC-CcEEEEecCCCCCccCCCCCC-----CcEEEeecccCc
Q 043008 70 NCTNPACVLSSITNFNHLSMLCFRHCKNLRHFPNNL-HFVC-PIIIDFSYCVNLTEFPQISGN-----IIDLILTETAIE 142 (517)
Q Consensus 70 ~~~~l~~~p~si~~l~~L~~L~L~~~~~l~~lp~~~-~l~s-L~~L~L~~c~~l~~~p~~~~~-----L~~L~L~~~~i~ 142 (517)
+|... .+| .++.+++|+.|+|++|... .+|..+ ++++ |+.|++++|. +..+|..+.. |+.|++++|.+.
T Consensus 582 ~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~-L~~lp~~~~~~~~~~L~~L~Ls~N~l~ 657 (876)
T 4ecn_A 582 HNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNK-LKYIPNIFNAKSVYVMGSVDFSYNKIG 657 (876)
T ss_dssp TSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSC-CCSCCSCCCTTCSSCEEEEECCSSCTT
T ss_pred CCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCC-CCcCchhhhccccCCCCEEECcCCcCC
Confidence 88655 777 8888889999999888766 788777 7888 9999998876 4477765433 678888888886
Q ss_pred ccC----CcCC--CCCCccEEEcccCcCCccccccc-cCCCCCcEEEcCCC-CCcCCccCCCC--------CCCCEEEec
Q 043008 143 EVP----SSTE--CLTNLQYLFLCSCKKLKRVSTSI-CKFKSLVWLSLNND-LTAIPQEIGCL--------SSLECLNLG 206 (517)
Q Consensus 143 ~lp----~~i~--~l~~L~~L~l~~~~~l~~lp~~l-~~l~~L~~L~Ls~~-l~~lp~~l~~l--------~~L~~L~Ls 206 (517)
..+ ..+. .+++|+.|++++|.+. .+|..+ ..+++|+.|++++| +..+|..+... ++|+.|+|+
T Consensus 658 g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls 736 (876)
T 4ecn_A 658 SEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLR 736 (876)
T ss_dssp TTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECC
T ss_pred CccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECC
Confidence 432 2233 3458888888888766 555554 47888888888764 56677654432 388888888
Q ss_pred CCCCCcchhhhh--cCCCCCEEeccCCCCCCcCCCCC---CCccEEeccccc---CcCcCCCCCchhhhcchhhHHhhhc
Q 043008 207 GNNFEGLPASIK--QISRLECLDLSYCNSLQSLPELP---LHLEVLLATNCK---RLQSLPEIPSCLEELDASVLEKLSK 278 (517)
Q Consensus 207 ~n~l~~lp~~l~--~l~~L~~L~L~~c~~l~~lp~l~---~~L~~L~~~~c~---~l~~l~~~~~~L~~L~~l~~~~Ls~ 278 (517)
+|+++.+|..+. .+++|+.|+|++ +.+..+|... ++|+.|++.++. .+......|..+..++.++.++|++
T Consensus 737 ~N~L~~lp~~l~~~~l~~L~~L~Ls~-N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~ 815 (876)
T 4ecn_A 737 FNKLTSLSDDFRATTLPYLSNMDVSY-NCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGS 815 (876)
T ss_dssp SSCCCCCCGGGSTTTCTTCCEEECCS-SCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCS
T ss_pred CCCCccchHHhhhccCCCcCEEEeCC-CCCCccchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCC
Confidence 888888888876 888888888887 4555577533 567777776543 2344556677788888888888888
Q ss_pred CCCC
Q 043008 279 HSFG 282 (517)
Q Consensus 279 n~~~ 282 (517)
|.+.
T Consensus 816 N~L~ 819 (876)
T 4ecn_A 816 NDIR 819 (876)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 8874
No 22
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.91 E-value=9.5e-24 Score=226.96 Aligned_cols=133 Identities=24% Similarity=0.353 Sum_probs=79.2
Q ss_pred CCCCccEEEcccCcCCcccc---ccccCCCCCcEEEcCCC-CCcCC---ccCCCCCCCCEEEecCCCCCcchhhhhcCCC
Q 043008 150 CLTNLQYLFLCSCKKLKRVS---TSICKFKSLVWLSLNND-LTAIP---QEIGCLSSLECLNLGGNNFEGLPASIKQISR 222 (517)
Q Consensus 150 ~l~~L~~L~l~~~~~l~~lp---~~l~~l~~L~~L~Ls~~-l~~lp---~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~ 222 (517)
.+++|+.|++++|.+.+..| ..++.+++|+.|++++| +..++ ..+..+++|++|+|++|+++.+|..+..+++
T Consensus 332 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~ 411 (549)
T 2z81_A 332 HLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEK 411 (549)
T ss_dssp HCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCCCTT
T ss_pred cCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCChhhccccc
Confidence 35556666666665555443 22455666666666554 34443 2367778888888888888888877778888
Q ss_pred CCEEeccCCCCCCcCCC-CCCCccEEecccc---------cCcCc-------CCCCCchhhhcchhhHHhhhcCCCCCc
Q 043008 223 LECLDLSYCNSLQSLPE-LPLHLEVLLATNC---------KRLQS-------LPEIPSCLEELDASVLEKLSKHSFGEE 284 (517)
Q Consensus 223 L~~L~L~~c~~l~~lp~-l~~~L~~L~~~~c---------~~l~~-------l~~~~~~L~~L~~l~~~~Ls~n~~~~~ 284 (517)
|+.|++++| .++.+|. .+++|+.|++.++ ++|+. +...|. ...++.++.++|++|.+++.
T Consensus 412 L~~L~Ls~N-~l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l~~ip~-~~~l~~L~~L~Ls~N~l~~~ 488 (549)
T 2z81_A 412 MRFLNLSST-GIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLKTLPD-ASLFPVLLVMKISRNQLKSV 488 (549)
T ss_dssp CCEEECTTS-CCSCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCC-GGGCTTCCEEECCSSCCCCC
T ss_pred ccEEECCCC-CcccccchhcCCceEEECCCCChhhhcccCChhcEEECCCCccCcCCC-cccCccCCEEecCCCccCCc
Confidence 888888874 4555553 2344555544432 11111 112232 34566777788888877643
No 23
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.91 E-value=4.5e-23 Score=216.78 Aligned_cols=227 Identities=19% Similarity=0.148 Sum_probs=186.8
Q ss_pred CCCCCCCCCCCCCccEEeccCCCCCccc-cccCCCCCCccEEEccCCCCCCCCC-CCCCCCCccEEeeccccCCcccCcc
Q 043008 3 PLRTLPSNFKPKNLVELNLPYGHKVVQI-WEGKKRAFKLKFINLSHSQCHIKIP-DPSETPNLERIDILNCTNPACVLSS 80 (517)
Q Consensus 3 pl~~lP~~f~~~~L~~L~L~~n~~l~~l-~~~~~~l~~L~~L~Ls~~~~l~~~p-~l~~l~~L~~L~L~~~~~l~~~p~s 80 (517)
.++.+|..+ +++|++|+|++| .+..+ +..+..+++|+.|+|++|.+....| .|.++++|++|+|++|......+..
T Consensus 65 ~l~~iP~~~-~~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 142 (452)
T 3zyi_A 65 GLSEVPQGI-PSNTRYLNLMEN-NIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGA 142 (452)
T ss_dssp CCSSCCSCC-CTTCSEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTT
T ss_pred CcCccCCCC-CCCccEEECcCC-cCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhh
Confidence 466788766 578999999999 88877 6788999999999999998655555 4889999999999998765555556
Q ss_pred ccCCCCCCEEeccCCcCccccCCCC-CCCCCcEEEEecCCCCCccCCC----CCCCcEEEeecccCcccCCcCCCCCCcc
Q 043008 81 ITNFNHLSMLCFRHCKNLRHFPNNL-HFVCPIIIDFSYCVNLTEFPQI----SGNIIDLILTETAIEEVPSSTECLTNLQ 155 (517)
Q Consensus 81 i~~l~~L~~L~L~~~~~l~~lp~~~-~l~sL~~L~L~~c~~l~~~p~~----~~~L~~L~L~~~~i~~lp~~i~~l~~L~ 155 (517)
++.+++|++|+|++|......+..+ ++++|+.|++++|+.++.++.. +.+|+.|++++|.+..+|. +..+++|+
T Consensus 143 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~ 221 (452)
T 3zyi_A 143 FEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPN-LTPLVGLE 221 (452)
T ss_dssp SSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCC-CTTCTTCC
T ss_pred hcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccccc-cccccccc
Confidence 8899999999999987654444455 8999999999999888888753 4567999999999998874 78899999
Q ss_pred EEEcccCcCCccccccccCCCCCcEEEcCCCC-CcC-CccCCCCCCCCEEEecCCCCCcchh-hhhcCCCCCEEeccCCC
Q 043008 156 YLFLCSCKKLKRVSTSICKFKSLVWLSLNNDL-TAI-PQEIGCLSSLECLNLGGNNFEGLPA-SIKQISRLECLDLSYCN 232 (517)
Q Consensus 156 ~L~l~~~~~l~~lp~~l~~l~~L~~L~Ls~~l-~~l-p~~l~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~L~~c~ 232 (517)
.|++++|.+.+..|..+.++++|+.|++++|. ..+ |..+..+++|+.|+|++|+++.+|. .+..+++|+.|+|++|+
T Consensus 222 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 222 ELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp EEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred EEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCC
Confidence 99999998888888889999999999997753 444 5568888999999999999988764 46778899999998854
No 24
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.91 E-value=3.4e-23 Score=217.35 Aligned_cols=248 Identities=20% Similarity=0.225 Sum_probs=175.0
Q ss_pred CCCC-CCCC-CCCCccEEeccCCCCCc-cc-cccCCCCCCccEEEccCCCCCCCCC-CCCCCCCccEEeeccccCCcccC
Q 043008 4 LRTL-PSNF-KPKNLVELNLPYGHKVV-QI-WEGKKRAFKLKFINLSHSQCHIKIP-DPSETPNLERIDILNCTNPACVL 78 (517)
Q Consensus 4 l~~l-P~~f-~~~~L~~L~L~~n~~l~-~l-~~~~~~l~~L~~L~Ls~~~~l~~~p-~l~~l~~L~~L~L~~~~~l~~~p 78 (517)
++.+ |..| ++++|++|+|++| .+. .+ +..+..+++|++|+|++|.+....| .+.++++|++|+|++|.....++
T Consensus 42 i~~~~~~~~~~l~~L~~L~L~~n-~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 120 (455)
T 3v47_A 42 IAELNETSFSRLQDLQFLKVEQQ-TPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVL 120 (455)
T ss_dssp CCEECTTTTSSCTTCCEEECCCC-STTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHH
T ss_pred cCcCChhHhccCccccEEECcCC-cccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCcccc
Confidence 3444 3344 6777777777777 554 44 4556777777777777777555545 36777777777777775544444
Q ss_pred cc--ccCCCCCCEEeccCCcCccccCCC-C-CCCCCcEEEEecCCCCCccCCCC--------------------------
Q 043008 79 SS--ITNFNHLSMLCFRHCKNLRHFPNN-L-HFVCPIIIDFSYCVNLTEFPQIS-------------------------- 128 (517)
Q Consensus 79 ~s--i~~l~~L~~L~L~~~~~l~~lp~~-~-~l~sL~~L~L~~c~~l~~~p~~~-------------------------- 128 (517)
.. ++.+++|++|++++|......|.. + ++++|++|++++|......|..+
T Consensus 121 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~ 200 (455)
T 3v47_A 121 SGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWL 200 (455)
T ss_dssp HSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCT
T ss_pred CcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhc
Confidence 43 666677777777776655555554 3 66666666666654332222111
Q ss_pred --------------------------------------------------------------------------CCCcEE
Q 043008 129 --------------------------------------------------------------------------GNIIDL 134 (517)
Q Consensus 129 --------------------------------------------------------------------------~~L~~L 134 (517)
.+|+.|
T Consensus 201 ~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L 280 (455)
T 3v47_A 201 GWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTC 280 (455)
T ss_dssp THHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEE
T ss_pred cccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEE
Confidence 245566
Q ss_pred EeecccCcc-cCCcCCCCCCccEEEcccCcCCccccccccCCCCCcEEEcCCC-CCcC-CccCCCCCCCCEEEecCCCCC
Q 043008 135 ILTETAIEE-VPSSTECLTNLQYLFLCSCKKLKRVSTSICKFKSLVWLSLNND-LTAI-PQEIGCLSSLECLNLGGNNFE 211 (517)
Q Consensus 135 ~L~~~~i~~-lp~~i~~l~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~Ls~~-l~~l-p~~l~~l~~L~~L~Ls~n~l~ 211 (517)
++++|.+.. .|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++| +..+ |..+..+++|++|+|++|+++
T Consensus 281 ~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 360 (455)
T 3v47_A 281 DLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIR 360 (455)
T ss_dssp ECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCC
T ss_pred EecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCccc
Confidence 666666663 3667889999999999999988888889999999999999876 4555 567899999999999999999
Q ss_pred cc-hhhhhcCCCCCEEeccCCCCCCcCCC-C---CCCccEEeccccc
Q 043008 212 GL-PASIKQISRLECLDLSYCNSLQSLPE-L---PLHLEVLLATNCK 253 (517)
Q Consensus 212 ~l-p~~l~~l~~L~~L~L~~c~~l~~lp~-l---~~~L~~L~~~~c~ 253 (517)
.+ |..+..+++|+.|+|++ +.++.+|. . .++|+.|++.+++
T Consensus 361 ~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 361 ALGDQSFLGLPNLKELALDT-NQLKSVPDGIFDRLTSLQKIWLHTNP 406 (455)
T ss_dssp EECTTTTTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred ccChhhccccccccEEECCC-CccccCCHhHhccCCcccEEEccCCC
Confidence 86 78899999999999998 56777764 2 3578888877654
No 25
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.91 E-value=5.7e-23 Score=215.19 Aligned_cols=227 Identities=19% Similarity=0.160 Sum_probs=187.8
Q ss_pred CCCCCCCCCCCCCccEEeccCCCCCcccc-ccCCCCCCccEEEccCCCCCCCCC-CCCCCCCccEEeeccccCCcccCcc
Q 043008 3 PLRTLPSNFKPKNLVELNLPYGHKVVQIW-EGKKRAFKLKFINLSHSQCHIKIP-DPSETPNLERIDILNCTNPACVLSS 80 (517)
Q Consensus 3 pl~~lP~~f~~~~L~~L~L~~n~~l~~l~-~~~~~l~~L~~L~Ls~~~~l~~~p-~l~~l~~L~~L~L~~~~~l~~~p~s 80 (517)
.++.+|..+ +++++.|+|++| .++.++ ..+..+++|++|+|++|.+....+ .|.++++|++|+|++|......+..
T Consensus 54 ~l~~iP~~~-~~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 131 (440)
T 3zyj_A 54 NLREVPDGI-STNTRLLNLHEN-QIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGA 131 (440)
T ss_dssp CCSSCCSCC-CTTCSEEECCSC-CCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTT
T ss_pred CcCcCCCCC-CCCCcEEEccCC-cCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhH
Confidence 467788776 578999999999 898884 788999999999999998554444 4889999999999998655444557
Q ss_pred ccCCCCCCEEeccCCcCccccCCCC-CCCCCcEEEEecCCCCCccCCC----CCCCcEEEeecccCcccCCcCCCCCCcc
Q 043008 81 ITNFNHLSMLCFRHCKNLRHFPNNL-HFVCPIIIDFSYCVNLTEFPQI----SGNIIDLILTETAIEEVPSSTECLTNLQ 155 (517)
Q Consensus 81 i~~l~~L~~L~L~~~~~l~~lp~~~-~l~sL~~L~L~~c~~l~~~p~~----~~~L~~L~L~~~~i~~lp~~i~~l~~L~ 155 (517)
+..+++|++|+|++|......+..+ ++++|+.|++++|+.+..++.. +.+|+.|++++|.++.+|. +..+++|+
T Consensus 132 ~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~ 210 (440)
T 3zyj_A 132 FVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPN-LTPLIKLD 210 (440)
T ss_dssp SCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCC-CTTCSSCC
T ss_pred hhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccc-cCCCcccC
Confidence 8999999999999987665444456 8999999999998888887752 4567999999999999885 88899999
Q ss_pred EEEcccCcCCccccccccCCCCCcEEEcCCC-CCcC-CccCCCCCCCCEEEecCCCCCcchh-hhhcCCCCCEEeccCCC
Q 043008 156 YLFLCSCKKLKRVSTSICKFKSLVWLSLNND-LTAI-PQEIGCLSSLECLNLGGNNFEGLPA-SIKQISRLECLDLSYCN 232 (517)
Q Consensus 156 ~L~l~~~~~l~~lp~~l~~l~~L~~L~Ls~~-l~~l-p~~l~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~L~~c~ 232 (517)
.|++++|.+.+..|..+.++++|+.|++++| +..+ +..+..+++|+.|+|++|+++.+|. .+..+++|+.|+|++|+
T Consensus 211 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 211 ELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred EEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCC
Confidence 9999999888888888999999999999775 4444 4568889999999999999998764 46788999999998854
No 26
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.90 E-value=7.1e-24 Score=230.81 Aligned_cols=267 Identities=14% Similarity=0.102 Sum_probs=221.6
Q ss_pred CCCCccEEeccCCCCCccccccCCCCCCccEEEccCCCCCCCCCCCCCCCCccEEeeccccCCcccCccccCCCCCCEEe
Q 043008 12 KPKNLVELNLPYGHKVVQIWEGKKRAFKLKFINLSHSQCHIKIPDPSETPNLERIDILNCTNPACVLSSITNFNHLSMLC 91 (517)
Q Consensus 12 ~~~~L~~L~L~~n~~l~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~~~~l~~~p~si~~l~~L~~L~ 91 (517)
.+++|+.|+++++ .+..++ .+..+++|+.|++++|.+ +.+|.+ .+++|++|++++|.....+ .++.+++|++|+
T Consensus 283 ~l~~L~~L~l~~~-~~~~l~-~l~~~~~L~~L~l~~n~l-~~lp~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ 356 (606)
T 3vq2_A 283 CLANVSAMSLAGV-SIKYLE-DVPKHFKWQSLSIIRCQL-KQFPTL-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLD 356 (606)
T ss_dssp GGTTCSEEEEESC-CCCCCC-CCCTTCCCSEEEEESCCC-SSCCCC-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEE
T ss_pred cCCCCCEEEecCc-cchhhh-hccccccCCEEEcccccC-cccccC-CCCccceeeccCCcCccch--hhccCCCCCEEE
Confidence 6789999999999 899888 889999999999999996 889988 9999999999999666544 678999999999
Q ss_pred ccCCcCccc--cCCCC-CCCCCcEEEEecCCCCCccCCCC---CCCcEEEeecccCcccCC--cCCCCCCccEEEcccCc
Q 043008 92 FRHCKNLRH--FPNNL-HFVCPIIIDFSYCVNLTEFPQIS---GNIIDLILTETAIEEVPS--STECLTNLQYLFLCSCK 163 (517)
Q Consensus 92 L~~~~~l~~--lp~~~-~l~sL~~L~L~~c~~l~~~p~~~---~~L~~L~L~~~~i~~lp~--~i~~l~~L~~L~l~~~~ 163 (517)
+++|..... .|..+ .+++|++|++++|. +..+|..+ .+|+.|++++|.+..++. .+..+++|+.|++++|.
T Consensus 357 ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~ 435 (606)
T 3vq2_A 357 LSRNALSFSGCCSYSDLGTNSLRHLDLSFNG-AIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTN 435 (606)
T ss_dssp CCSSCEEEEEECCHHHHCCSCCCEEECCSCS-EEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSC
T ss_pred CcCCccCCCcchhhhhccCCcccEeECCCCc-cccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCC
Confidence 999976544 36556 89999999999976 55566544 467999999999997654 78899999999999999
Q ss_pred CCccccccccCCCCCcEEEcCCCC-C--cCCccCCCCCCCCEEEecCCCCCcc-hhhhhcCCCCCEEeccCCCCCCcCCC
Q 043008 164 KLKRVSTSICKFKSLVWLSLNNDL-T--AIPQEIGCLSSLECLNLGGNNFEGL-PASIKQISRLECLDLSYCNSLQSLPE 239 (517)
Q Consensus 164 ~l~~lp~~l~~l~~L~~L~Ls~~l-~--~lp~~l~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~L~~c~~l~~lp~ 239 (517)
..+..|..+..+++|+.|++++|. . .+|..+..+++|++|+|++|+++.+ |..+..+++|+.|+|++|+.....|.
T Consensus 436 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 515 (606)
T 3vq2_A 436 TKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSS 515 (606)
T ss_dssp CEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGG
T ss_pred CCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHH
Confidence 988899999999999999998864 3 3688899999999999999999975 67899999999999999755554465
Q ss_pred CC---CCccEEecccccCcCcCCCCCchhhhcc-hhhHHhhhcCCCCCcceeee
Q 043008 240 LP---LHLEVLLATNCKRLQSLPEIPSCLEELD-ASVLEKLSKHSFGEEYRIWS 289 (517)
Q Consensus 240 l~---~~L~~L~~~~c~~l~~l~~~~~~L~~L~-~l~~~~Ls~n~~~~~~~l~~ 289 (517)
.+ ++|+.|++.++. ++ ..|..+..++ .+..+++++|++.+.|.+.+
T Consensus 516 ~~~~l~~L~~L~l~~N~-l~---~~p~~~~~l~~~L~~l~l~~N~~~c~c~~~~ 565 (606)
T 3vq2_A 516 HYNQLYSLSTLDCSFNR-IE---TSKGILQHFPKSLAFFNLTNNSVACICEHQK 565 (606)
T ss_dssp GTTTCTTCCEEECTTSC-CC---CEESCGGGSCTTCCEEECCSCCCCCSSTTHH
T ss_pred HccCCCcCCEEECCCCc-Cc---ccCHhHhhhcccCcEEEccCCCcccCCccHH
Confidence 43 578888887764 33 4455577886 48889999999998775533
No 27
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.90 E-value=3.6e-23 Score=209.40 Aligned_cols=264 Identities=14% Similarity=0.193 Sum_probs=211.6
Q ss_pred CCCCCCCCCCCCCCccEEeccCCCCCccccccCCCCCCccEEEccCCCCCCCCCCCCCCCCccEEeeccccCCcccCccc
Q 043008 2 YPLRTLPSNFKPKNLVELNLPYGHKVVQIWEGKKRAFKLKFINLSHSQCHIKIPDPSETPNLERIDILNCTNPACVLSSI 81 (517)
Q Consensus 2 ~pl~~lP~~f~~~~L~~L~L~~n~~l~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~~~~l~~~p~si 81 (517)
+.+..+|....+++|++|++++| .+..++ .+..+++|++|+|++|. +..++.+..+++|++|++++|.....++ .+
T Consensus 76 n~i~~~~~~~~l~~L~~L~L~~n-~i~~~~-~~~~l~~L~~L~l~~n~-i~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~ 151 (347)
T 4fmz_A 76 NQITDISPLSNLVKLTNLYIGTN-KITDIS-ALQNLTNLRELYLNEDN-ISDISPLANLTKMYSLNLGANHNLSDLS-PL 151 (347)
T ss_dssp SCCCCCGGGTTCTTCCEEECCSS-CCCCCG-GGTTCTTCSEEECTTSC-CCCCGGGTTCTTCCEEECTTCTTCCCCG-GG
T ss_pred CccccchhhhcCCcCCEEEccCC-cccCch-HHcCCCcCCEEECcCCc-ccCchhhccCCceeEEECCCCCCccccc-ch
Confidence 45667776338999999999999 999885 68999999999999998 4566679999999999999997766654 49
Q ss_pred cCCCCCCEEeccCCcCccccCCCC-CCCCCcEEEEecCCCCCccCC--CCCCCcEEEeecccCcccCCcCCCCCCccEEE
Q 043008 82 TNFNHLSMLCFRHCKNLRHFPNNL-HFVCPIIIDFSYCVNLTEFPQ--ISGNIIDLILTETAIEEVPSSTECLTNLQYLF 158 (517)
Q Consensus 82 ~~l~~L~~L~L~~~~~l~~lp~~~-~l~sL~~L~L~~c~~l~~~p~--~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~ 158 (517)
..+++|++|++++|..... +. + .+++|+.|++++|. +..++. ...+|+.|++++|.+..++. +..+++|+.|+
T Consensus 152 ~~l~~L~~L~l~~~~~~~~-~~-~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~ 227 (347)
T 4fmz_A 152 SNMTGLNYLTVTESKVKDV-TP-IANLTDLYSLSLNYNQ-IEDISPLASLTSLHYFTAYVNQITDITP-VANMTRLNSLK 227 (347)
T ss_dssp TTCTTCCEEECCSSCCCCC-GG-GGGCTTCSEEECTTSC-CCCCGGGGGCTTCCEEECCSSCCCCCGG-GGGCTTCCEEE
T ss_pred hhCCCCcEEEecCCCcCCc-hh-hccCCCCCEEEccCCc-ccccccccCCCccceeecccCCCCCCch-hhcCCcCCEEE
Confidence 9999999999999875543 33 5 89999999999975 444443 35678999999999998776 88899999999
Q ss_pred cccCcCCccccccccCCCCCcEEEcCCCC-CcCCccCCCCCCCCEEEecCCCCCcchhhhhcCCCCCEEeccCCCCCCcC
Q 043008 159 LCSCKKLKRVSTSICKFKSLVWLSLNNDL-TAIPQEIGCLSSLECLNLGGNNFEGLPASIKQISRLECLDLSYCNSLQSL 237 (517)
Q Consensus 159 l~~~~~l~~lp~~l~~l~~L~~L~Ls~~l-~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~c~~l~~l 237 (517)
+++|.+....+ +..+++|+.|+++++. ..+ +.+..+++|++|++++|+++.+| .+..+++|+.|++++|+.....
T Consensus 228 l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~L~~n~l~~~~ 303 (347)
T 4fmz_A 228 IGNNKITDLSP--LANLSQLTWLEIGTNQISDI-NAVKDLTKLKMLNVGSNQISDIS-VLNNLSQLNSLFLNNNQLGNED 303 (347)
T ss_dssp CCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC-GGGTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCGGG
T ss_pred ccCCccCCCcc--hhcCCCCCEEECCCCccCCC-hhHhcCCCcCEEEccCCccCCCh-hhcCCCCCCEEECcCCcCCCcC
Confidence 99997765444 8899999999998764 444 56889999999999999999986 6889999999999997544444
Q ss_pred CC---CCCCccEEecccccCcCcCCCCCchhhhcchhhHHhhhcCCCC
Q 043008 238 PE---LPLHLEVLLATNCKRLQSLPEIPSCLEELDASVLEKLSKHSFG 282 (517)
Q Consensus 238 p~---l~~~L~~L~~~~c~~l~~l~~~~~~L~~L~~l~~~~Ls~n~~~ 282 (517)
|+ -.++|+.|++.+|. +.. .+. +..++.+..+++++|+++
T Consensus 304 ~~~l~~l~~L~~L~L~~n~-l~~---~~~-~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 304 MEVIGGLTNLTTLFLSQNH-ITD---IRP-LASLSKMDSADFANQVIK 346 (347)
T ss_dssp HHHHHTCTTCSEEECCSSS-CCC---CGG-GGGCTTCSEESSSCC---
T ss_pred hhHhhccccCCEEEccCCc-ccc---ccC-hhhhhccceeehhhhccc
Confidence 33 24688999988875 222 222 777888888888888764
No 28
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.90 E-value=4.4e-23 Score=224.53 Aligned_cols=152 Identities=25% Similarity=0.285 Sum_probs=105.4
Q ss_pred CCCcEEEeecccCcccCCcCCCCCCccEEEcccCcCCccccccccCCCCCcEEEcCCCC--CcCCc-cCCCCCCCCEEEe
Q 043008 129 GNIIDLILTETAIEEVPSSTECLTNLQYLFLCSCKKLKRVSTSICKFKSLVWLSLNNDL--TAIPQ-EIGCLSSLECLNL 205 (517)
Q Consensus 129 ~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~Ls~~l--~~lp~-~l~~l~~L~~L~L 205 (517)
.+|+.|++++|.++++|..+..+++|++|++++|.+.+..|..+..+++|+.|+++++. ..+|. .+..+++|++|++
T Consensus 278 ~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l 357 (606)
T 3t6q_A 278 SGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDL 357 (606)
T ss_dssp TTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEEC
T ss_pred cCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEEC
Confidence 45688888888888888888888888888888887777777788888888888887763 24544 3778888888888
Q ss_pred cCCCCCcc---hhhhhcCCCCCEEeccCCCCCCcCCCC---CCCccEEecccccCcCcCCCCCchhhhcchhhHHhhhcC
Q 043008 206 GGNNFEGL---PASIKQISRLECLDLSYCNSLQSLPEL---PLHLEVLLATNCKRLQSLPEIPSCLEELDASVLEKLSKH 279 (517)
Q Consensus 206 s~n~l~~l---p~~l~~l~~L~~L~L~~c~~l~~lp~l---~~~L~~L~~~~c~~l~~l~~~~~~L~~L~~l~~~~Ls~n 279 (517)
++|.++.+ |..+..+++|+.|++++|+.....|.. .++|+.|++.++.-... ..+..+..++.++.+++++|
T Consensus 358 ~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~~~~l~~L~~L~l~~n 435 (606)
T 3t6q_A 358 SHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVK--DAQSPFQNLHLLKVLNLSHS 435 (606)
T ss_dssp CSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECC--TTCCTTTTCTTCCEEECTTC
T ss_pred CCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCc--ccchhhhCcccCCEEECCCC
Confidence 88888765 567788888888888875543333433 25666666665432111 11223555666666666666
Q ss_pred CCC
Q 043008 280 SFG 282 (517)
Q Consensus 280 ~~~ 282 (517)
.+.
T Consensus 436 ~l~ 438 (606)
T 3t6q_A 436 LLD 438 (606)
T ss_dssp CCB
T ss_pred ccC
Confidence 554
No 29
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.90 E-value=3.1e-24 Score=214.73 Aligned_cols=239 Identities=16% Similarity=0.222 Sum_probs=203.6
Q ss_pred CCccEEEccCCCCCC--CCC-CCCCCCCccEEeecc-ccCCcccCccccCCCCCCEEeccCCcCccccCCCC-CCCCCcE
Q 043008 38 FKLKFINLSHSQCHI--KIP-DPSETPNLERIDILN-CTNPACVLSSITNFNHLSMLCFRHCKNLRHFPNNL-HFVCPII 112 (517)
Q Consensus 38 ~~L~~L~Ls~~~~l~--~~p-~l~~l~~L~~L~L~~-~~~l~~~p~si~~l~~L~~L~L~~~~~l~~lp~~~-~l~sL~~ 112 (517)
.+++.|+|++|.+.. .+| .+.++++|++|+|++ |.....+|..++++++|++|++++|.....+|..+ ++++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 689999999999776 677 489999999999996 77777899999999999999999998888899888 9999999
Q ss_pred EEEecCCCCCccCCCC---CCCcEEEeecccCc-ccCCcCCCCC-CccEEEcccCcCCccccccccCCCCCcEEEcCCCC
Q 043008 113 IDFSYCVNLTEFPQIS---GNIIDLILTETAIE-EVPSSTECLT-NLQYLFLCSCKKLKRVSTSICKFKSLVWLSLNNDL 187 (517)
Q Consensus 113 L~L~~c~~l~~~p~~~---~~L~~L~L~~~~i~-~lp~~i~~l~-~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~Ls~~l 187 (517)
|++++|.....+|..+ .+|++|++++|.+. .+|..+..++ +|+.|++++|.+.+..|..+..++ |+.|++++|.
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~ 208 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM 208 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence 9999987666777654 56799999999999 8999999998 999999999999889999999998 9999998864
Q ss_pred --CcCCccCCCCCCCCEEEecCCCCCcchhhhhcCCCCCEEeccCCCCCCcCCCCC---CCccEEecccccCcCcCCCCC
Q 043008 188 --TAIPQEIGCLSSLECLNLGGNNFEGLPASIKQISRLECLDLSYCNSLQSLPELP---LHLEVLLATNCKRLQSLPEIP 262 (517)
Q Consensus 188 --~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~l~---~~L~~L~~~~c~~l~~l~~~~ 262 (517)
...|..+..+++|+.|+|++|.++..+..+..+++|+.|+|++|+....+|..+ ++|+.|++.++.--.. .|
T Consensus 209 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~---ip 285 (313)
T 1ogq_A 209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGE---IP 285 (313)
T ss_dssp EEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEE---CC
T ss_pred ccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCccccc---CC
Confidence 357778999999999999999999766678999999999999976555777654 5777887777543223 33
Q ss_pred chhhhcchhhHHhhhcCCC
Q 043008 263 SCLEELDASVLEKLSKHSF 281 (517)
Q Consensus 263 ~~L~~L~~l~~~~Ls~n~~ 281 (517)
.. ..++.+..+++++|+.
T Consensus 286 ~~-~~l~~L~~l~l~~N~~ 303 (313)
T 1ogq_A 286 QG-GNLQRFDVSAYANNKC 303 (313)
T ss_dssp CS-TTGGGSCGGGTCSSSE
T ss_pred CC-ccccccChHHhcCCCC
Confidence 32 6677778888999983
No 30
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.90 E-value=2.6e-23 Score=222.15 Aligned_cols=154 Identities=19% Similarity=0.240 Sum_probs=125.6
Q ss_pred CCCCCCcEEEeecccCcc-cCCcCCCCCCccEEEcccCcCCc--cccccccCCCCCcEEEcCCCC-Cc-CCcc-CCCCCC
Q 043008 126 QISGNIIDLILTETAIEE-VPSSTECLTNLQYLFLCSCKKLK--RVSTSICKFKSLVWLSLNNDL-TA-IPQE-IGCLSS 199 (517)
Q Consensus 126 ~~~~~L~~L~L~~~~i~~-lp~~i~~l~~L~~L~l~~~~~l~--~lp~~l~~l~~L~~L~Ls~~l-~~-lp~~-l~~l~~ 199 (517)
..+.+|+.|++++|.+.. +|..+..+++|+.|++++|.+.+ .+|..+..+++|+.|++++|. .. +|.. +..+++
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~ 400 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKS 400 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTT
T ss_pred hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCcc
Confidence 455678999999999985 78889999999999999998876 677889999999999998764 44 7775 788999
Q ss_pred CCEEEecCCCCCc-chhhhhcCCCCCEEeccCCCCCCcCCCC---CCCccEEecccccCcCcCCCCCc-hhhhcchhhHH
Q 043008 200 LECLNLGGNNFEG-LPASIKQISRLECLDLSYCNSLQSLPEL---PLHLEVLLATNCKRLQSLPEIPS-CLEELDASVLE 274 (517)
Q Consensus 200 L~~L~Ls~n~l~~-lp~~l~~l~~L~~L~L~~c~~l~~lp~l---~~~L~~L~~~~c~~l~~l~~~~~-~L~~L~~l~~~ 274 (517)
|++|++++|+++. +|..+. ++|+.|+|++| .++.+|.. .++|+.|++.++ .++. .|. .+..++.+..+
T Consensus 401 L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~L~~N-~l~~---l~~~~~~~l~~L~~L 473 (520)
T 2z7x_B 401 LLSLNMSSNILTDTIFRCLP--PRIKVLDLHSN-KIKSIPKQVVKLEALQELNVASN-QLKS---VPDGIFDRLTSLQKI 473 (520)
T ss_dssp CCEEECCSSCCCGGGGGSCC--TTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSS-CCCC---CCTTTTTTCTTCCEE
T ss_pred CCEEECcCCCCCcchhhhhc--ccCCEEECCCC-cccccchhhhcCCCCCEEECCCC-cCCc---cCHHHhccCCcccEE
Confidence 9999999999974 565543 79999999985 67788864 367888888775 3333 333 47888889999
Q ss_pred hhhcCCCCCcce
Q 043008 275 KLSKHSFGEEYR 286 (517)
Q Consensus 275 ~Ls~n~~~~~~~ 286 (517)
+|++|++.+.|.
T Consensus 474 ~l~~N~~~c~c~ 485 (520)
T 2z7x_B 474 WLHTNPWDCSCP 485 (520)
T ss_dssp ECCSSCBCCCHH
T ss_pred ECcCCCCcccCC
Confidence 999999988774
No 31
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.90 E-value=9.1e-23 Score=222.31 Aligned_cols=96 Identities=23% Similarity=0.278 Sum_probs=71.3
Q ss_pred CCccCCCCCCCCEEEecCCCCCcc-hhhhhcCCCCCEEeccCCCCCCcCCC-CC---CCccEEecccccCcCcCCCCCch
Q 043008 190 IPQEIGCLSSLECLNLGGNNFEGL-PASIKQISRLECLDLSYCNSLQSLPE-LP---LHLEVLLATNCKRLQSLPEIPSC 264 (517)
Q Consensus 190 lp~~l~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~L~~c~~l~~lp~-l~---~~L~~L~~~~c~~l~~l~~~~~~ 264 (517)
.|..+..+++|++|+|++|+++.+ |..+.++++|+.|+|++ ++++.++. .+ ++|+.|++.+ ++.....|..
T Consensus 486 ~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~-N~l~~l~~~~~~~l~~L~~L~Ls~---N~l~~~~~~~ 561 (635)
T 4g8a_A 486 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH-NNFFSLDTFPYKCLNSLQVLDYSL---NHIMTSKKQE 561 (635)
T ss_dssp ECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTT-SCCCBCCCGGGTTCTTCCEEECTT---SCCCBCCSSC
T ss_pred CchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCC-CcCCCCChhHHhCCCCCCEEECCC---CcCCCCCHHH
Confidence 456788889999999999999976 57788999999999997 46666654 23 4566666654 4444455667
Q ss_pred hhhc-chhhHHhhhcCCCCCcceeee
Q 043008 265 LEEL-DASVLEKLSKHSFGEEYRIWS 289 (517)
Q Consensus 265 L~~L-~~l~~~~Ls~n~~~~~~~l~~ 289 (517)
+..+ ..+..++|++|||.|.|.+.+
T Consensus 562 l~~l~~~L~~L~L~~Np~~C~C~~~~ 587 (635)
T 4g8a_A 562 LQHFPSSLAFLNLTQNDFACTCEHQS 587 (635)
T ss_dssp TTCCCTTCCEEECTTCCBCCSGGGHH
T ss_pred HHhhhCcCCEEEeeCCCCcccCCcHH
Confidence 7777 567888999999998885544
No 32
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.90 E-value=1.8e-22 Score=212.48 Aligned_cols=270 Identities=14% Similarity=0.105 Sum_probs=186.8
Q ss_pred CCCCCCCCCCCCCccEEeccCCCCCccccccCCCCCCccEEEccCCCCCCCCCCCCCCCCccEEeeccccCCcccCcccc
Q 043008 3 PLRTLPSNFKPKNLVELNLPYGHKVVQIWEGKKRAFKLKFINLSHSQCHIKIPDPSETPNLERIDILNCTNPACVLSSIT 82 (517)
Q Consensus 3 pl~~lP~~f~~~~L~~L~L~~n~~l~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~~~~l~~~p~si~ 82 (517)
.++.+|....+++|++|+|++| .++.++ +..+++|++|+|++|.+ ..+| ++.+++|++|++++|... .++ ++
T Consensus 53 ~l~~~~~l~~l~~L~~L~Ls~n-~l~~~~--~~~l~~L~~L~Ls~N~l-~~~~-~~~l~~L~~L~L~~N~l~-~l~--~~ 124 (457)
T 3bz5_A 53 SITDMTGIEKLTGLTKLICTSN-NITTLD--LSQNTNLTYLACDSNKL-TNLD-VTPLTKLTYLNCDTNKLT-KLD--VS 124 (457)
T ss_dssp CCCCCTTGGGCTTCSEEECCSS-CCSCCC--CTTCTTCSEEECCSSCC-SCCC-CTTCTTCCEEECCSSCCS-CCC--CT
T ss_pred CcccChhhcccCCCCEEEccCC-cCCeEc--cccCCCCCEEECcCCCC-ceee-cCCCCcCCEEECCCCcCC-eec--CC
Confidence 4556663337778888888888 777764 67778888888888774 3444 777888888888887543 344 77
Q ss_pred CCCCCCEEeccCCcCccccCCCC-CCCCCcEEEEecCCCCCccC-CCCCCCcEEEeecccCcccCCcCCCCCCccEEEcc
Q 043008 83 NFNHLSMLCFRHCKNLRHFPNNL-HFVCPIIIDFSYCVNLTEFP-QISGNIIDLILTETAIEEVPSSTECLTNLQYLFLC 160 (517)
Q Consensus 83 ~l~~L~~L~L~~~~~l~~lp~~~-~l~sL~~L~L~~c~~l~~~p-~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~ 160 (517)
.+++|++|++++|.... ++ + ++++|+.|++++|..++.++ ..+.+|+.|++++|.++.+| +..+++|+.|+++
T Consensus 125 ~l~~L~~L~l~~N~l~~-l~--l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~l~--l~~l~~L~~L~l~ 199 (457)
T 3bz5_A 125 QNPLLTYLNCARNTLTE-ID--VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELD--VSQNKLLNRLNCD 199 (457)
T ss_dssp TCTTCCEEECTTSCCSC-CC--CTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCCCC--CTTCTTCCEEECC
T ss_pred CCCcCCEEECCCCccce-ec--cccCCcCCEEECCCCCcccccccccCCcCCEEECCCCccceec--cccCCCCCEEECc
Confidence 88888888888876544 33 5 78888888888876666653 23566788888888888887 7788888888888
Q ss_pred cCcCCccccccccCCCCCcEEEcCCC-CCcCCccCCCCCCCCEEEecCCCCCcchhhhhcCCCC----------CEEecc
Q 043008 161 SCKKLKRVSTSICKFKSLVWLSLNND-LTAIPQEIGCLSSLECLNLGGNNFEGLPASIKQISRL----------ECLDLS 229 (517)
Q Consensus 161 ~~~~l~~lp~~l~~l~~L~~L~Ls~~-l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L----------~~L~L~ 229 (517)
+|.+.+. .+..+++|+.|++++| +..+| +..+++|+.|++++|+++.+| +..+++| +.|+++
T Consensus 200 ~N~l~~~---~l~~l~~L~~L~Ls~N~l~~ip--~~~l~~L~~L~l~~N~l~~~~--~~~l~~L~~L~l~~n~L~~L~l~ 272 (457)
T 3bz5_A 200 TNNITKL---DLNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNPLTELD--VSTLSKLTTLHCIQTDLLEIDLT 272 (457)
T ss_dssp SSCCSCC---CCTTCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECTTCCCSCCCCT
T ss_pred CCcCCee---ccccCCCCCEEECcCCcccccC--ccccCCCCEEEeeCCcCCCcC--HHHCCCCCEEeccCCCCCEEECC
Confidence 8876654 3778888888988764 56666 778888999999998888776 3344444 445555
Q ss_pred CCCCCCcCCC-CCCCccEEecccccCcCcCCCCCchh-----hhcchhhHHhhhcCCCCCcceeeeeEEeeeCCCCc
Q 043008 230 YCNSLQSLPE-LPLHLEVLLATNCKRLQSLPEIPSCL-----EELDASVLEKLSKHSFGEEYRIWSIKFNFTNCLKL 300 (517)
Q Consensus 230 ~c~~l~~lp~-l~~~L~~L~~~~c~~l~~l~~~~~~L-----~~L~~l~~~~Ls~n~~~~~~~l~~l~~~~~nC~kL 300 (517)
+|+.+..+|. ..++|+.|++.+|..++.++.....+ ...+.+..+++++|.+++ + .+.+|.+|
T Consensus 273 ~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~------l--~l~~l~~L 341 (457)
T 3bz5_A 273 HNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTE------L--DVSHNTKL 341 (457)
T ss_dssp TCTTCCEEECTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSC------C--CCTTCTTC
T ss_pred CCccCCcccccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCcccc------c--ccccCCcC
Confidence 5555555553 23678888888877665554433323 333455666677777663 2 35666666
No 33
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.90 E-value=5.2e-23 Score=221.96 Aligned_cols=130 Identities=17% Similarity=0.213 Sum_probs=69.5
Q ss_pred CCCCCccEEEcccCcCCccccccccCCCCCcEEEcCCCC-CcC-C-ccCCCCCCCCEEEecCCCCCc-chhhhhcCCCCC
Q 043008 149 ECLTNLQYLFLCSCKKLKRVSTSICKFKSLVWLSLNNDL-TAI-P-QEIGCLSSLECLNLGGNNFEG-LPASIKQISRLE 224 (517)
Q Consensus 149 ~~l~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~Ls~~l-~~l-p-~~l~~l~~L~~L~Ls~n~l~~-lp~~l~~l~~L~ 224 (517)
..+++|+.|++++|...+ +|..+..+++|+.|+++++. ... | ..+..+++|++|++++|.+.. .|..+..+++|+
T Consensus 370 ~~~~~L~~L~l~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 448 (570)
T 2z63_A 370 FGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLE 448 (570)
T ss_dssp HTCSCCCEEECCSCSEEE-EEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCC
T ss_pred cccCccCEEECCCCcccc-ccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCc
Confidence 344555555555554333 33347777777777776643 222 2 245666667777776666664 455566666666
Q ss_pred EEeccCCCCC-CcCCCCC---CCccEEecccccCcCcCCCCCchhhhcchhhHHhhhcCCCC
Q 043008 225 CLDLSYCNSL-QSLPELP---LHLEVLLATNCKRLQSLPEIPSCLEELDASVLEKLSKHSFG 282 (517)
Q Consensus 225 ~L~L~~c~~l-~~lp~l~---~~L~~L~~~~c~~l~~l~~~~~~L~~L~~l~~~~Ls~n~~~ 282 (517)
.|++++|+.. ..+|..+ ++|+.|++.+|. .....|..+..++.++.++|++|.++
T Consensus 449 ~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~---l~~~~~~~~~~l~~L~~L~l~~n~l~ 507 (570)
T 2z63_A 449 VLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ---LEQLSPTAFNSLSSLQVLNMASNQLK 507 (570)
T ss_dssp EEECTTCEEGGGEECSCCTTCTTCCEEECTTSC---CCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred EEECcCCcCccccchhhhhcccCCCEEECCCCc---cccCChhhhhcccCCCEEeCCCCcCC
Confidence 6666665433 2344432 445555554442 12222344555555555555555544
No 34
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.90 E-value=2.4e-22 Score=227.22 Aligned_cols=274 Identities=14% Similarity=0.107 Sum_probs=192.9
Q ss_pred CCCCCCCCCCCCCccEEeccCCCCCccc-cccCCCCCCccEEEccCCCCCCCC-C-CCCCCCCccEEeeccccCCcccCc
Q 043008 3 PLRTLPSNFKPKNLVELNLPYGHKVVQI-WEGKKRAFKLKFINLSHSQCHIKI-P-DPSETPNLERIDILNCTNPACVLS 79 (517)
Q Consensus 3 pl~~lP~~f~~~~L~~L~L~~n~~l~~l-~~~~~~l~~L~~L~Ls~~~~l~~~-p-~l~~l~~L~~L~L~~~~~l~~~p~ 79 (517)
-++.+|. -+++|++|+|++| .+..+ +..+.++++|++|+|++|.....+ | .|.++++|++|+|++|......|.
T Consensus 15 ~L~~vP~--lp~~l~~LdLs~N-~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~ 91 (844)
T 3j0a_A 15 NLTQVPQ--VLNTTERLLLSFN-YIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPD 91 (844)
T ss_dssp CSSCCCS--SCTTCCEEEEESC-CCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTT
T ss_pred CCCCCCC--CCCCcCEEECCCC-cCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHh
Confidence 4678887 5789999999999 88877 678899999999999999766666 4 488999999999999877777788
Q ss_pred cccCCCCCCEEeccCCcCccccCCC--C-CCCCCcEEEEecCCCCCccC-CC---CCCCcEEEeecccCccc-CCcC---
Q 043008 80 SITNFNHLSMLCFRHCKNLRHFPNN--L-HFVCPIIIDFSYCVNLTEFP-QI---SGNIIDLILTETAIEEV-PSST--- 148 (517)
Q Consensus 80 si~~l~~L~~L~L~~~~~l~~lp~~--~-~l~sL~~L~L~~c~~l~~~p-~~---~~~L~~L~L~~~~i~~l-p~~i--- 148 (517)
.|+++++|++|+|++|......|.. + ++++|++|++++|......+ .. +.+|+.|++++|.+..+ |..+
T Consensus 92 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l 171 (844)
T 3j0a_A 92 AFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPL 171 (844)
T ss_dssp SSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHH
T ss_pred HccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccc
Confidence 9999999999999998877666654 5 88999999999976554433 22 45668888888877532 2222
Q ss_pred -----------------------CCCC------CccEEEcccCcCCccccccccC-------------------------
Q 043008 149 -----------------------ECLT------NLQYLFLCSCKKLKRVSTSICK------------------------- 174 (517)
Q Consensus 149 -----------------------~~l~------~L~~L~l~~~~~l~~lp~~l~~------------------------- 174 (517)
..+. +|+.|++++|.+.+..+..+..
T Consensus 172 ~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~ 251 (844)
T 3j0a_A 172 QGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHN 251 (844)
T ss_dssp HHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSS
T ss_pred cCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccc
Confidence 2222 2677777776544433322211
Q ss_pred -------------CCCCcEEEcCCCC-Cc-CCccCCCCCCCCEEEecCCCCCcc-hhhhhcCCCCCEEeccCCCCCCcC-
Q 043008 175 -------------FKSLVWLSLNNDL-TA-IPQEIGCLSSLECLNLGGNNFEGL-PASIKQISRLECLDLSYCNSLQSL- 237 (517)
Q Consensus 175 -------------l~~L~~L~Ls~~l-~~-lp~~l~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~L~~c~~l~~l- 237 (517)
.++|+.|+++++. .. .|..+..+++|+.|+|++|+++.+ |..+..+++|+.|+|++|+ ++.+
T Consensus 252 l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~ 330 (844)
T 3j0a_A 252 IKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNL-LGELY 330 (844)
T ss_dssp STTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCC-CSCCC
T ss_pred cCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCC-CCccC
Confidence 2567777776543 32 355677888888888888888865 5677888888888888754 4443
Q ss_pred CCCC---CCccEEecccccCcCcCCCCCchhhhcchhhHHhhhcCCCCC
Q 043008 238 PELP---LHLEVLLATNCKRLQSLPEIPSCLEELDASVLEKLSKHSFGE 283 (517)
Q Consensus 238 p~l~---~~L~~L~~~~c~~l~~l~~~~~~L~~L~~l~~~~Ls~n~~~~ 283 (517)
|..+ ++|+.|++.++ ......+..+..++.++.++|++|.++.
T Consensus 331 ~~~~~~l~~L~~L~L~~N---~i~~~~~~~~~~l~~L~~L~Ls~N~l~~ 376 (844)
T 3j0a_A 331 SSNFYGLPKVAYIDLQKN---HIAIIQDQTFKFLEKLQTLDLRDNALTT 376 (844)
T ss_dssp SCSCSSCTTCCEEECCSC---CCCCCCSSCSCSCCCCCEEEEETCCSCC
T ss_pred HHHhcCCCCCCEEECCCC---CCCccChhhhcCCCCCCEEECCCCCCCc
Confidence 4333 46666666654 2223334456677777777888877764
No 35
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.89 E-value=8.7e-22 Score=213.98 Aligned_cols=247 Identities=23% Similarity=0.250 Sum_probs=204.8
Q ss_pred CCCCCCCCCCCCCCccEEeccCCCCCccccccCCCCCCccEEEccCCCCCCCCCCCCCCCCccEEeeccccCCcccCccc
Q 043008 2 YPLRTLPSNFKPKNLVELNLPYGHKVVQIWEGKKRAFKLKFINLSHSQCHIKIPDPSETPNLERIDILNCTNPACVLSSI 81 (517)
Q Consensus 2 ~pl~~lP~~f~~~~L~~L~L~~n~~l~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~~~~l~~~p~si 81 (517)
..++++|..+. ++|++|+|++| .++.+|. .+++|++|+|++|. ++.+|. .+++|++|+|++|. +..+|.
T Consensus 50 n~L~~lp~~l~-~~L~~L~L~~N-~l~~lp~---~l~~L~~L~Ls~N~-l~~lp~--~l~~L~~L~Ls~N~-l~~l~~-- 118 (622)
T 3g06_A 50 SGLTTLPDCLP-AHITTLVIPDN-NLTSLPA---LPPELRTLEVSGNQ-LTSLPV--LPPGLLELSIFSNP-LTHLPA-- 118 (622)
T ss_dssp SCCSCCCSCCC-TTCSEEEECSC-CCSCCCC---CCTTCCEEEECSCC-CSCCCC--CCTTCCEEEECSCC-CCCCCC--
T ss_pred CCcCccChhhC-CCCcEEEecCC-CCCCCCC---cCCCCCEEEcCCCc-CCcCCC--CCCCCCEEECcCCc-CCCCCC--
Confidence 46788888764 89999999999 9999887 57899999999998 556776 78999999999984 455665
Q ss_pred cCCCCCCEEeccCCcCccccCCCCCCCCCcEEEEecCCCCCccCCCCCCCcEEEeecccCcccCCcCCCCCCccEEEccc
Q 043008 82 TNFNHLSMLCFRHCKNLRHFPNNLHFVCPIIIDFSYCVNLTEFPQISGNIIDLILTETAIEEVPSSTECLTNLQYLFLCS 161 (517)
Q Consensus 82 ~~l~~L~~L~L~~~~~l~~lp~~~~l~sL~~L~L~~c~~l~~~p~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~ 161 (517)
.+++|+.|++++|. +..+|.. +++|++|++++| .+..+|..+.+|+.|++++|.++.+| ..+++|+.|++++
T Consensus 119 -~l~~L~~L~L~~N~-l~~lp~~--l~~L~~L~Ls~N-~l~~l~~~~~~L~~L~L~~N~l~~l~---~~~~~L~~L~Ls~ 190 (622)
T 3g06_A 119 -LPSGLCKLWIFGNQ-LTSLPVL--PPGLQELSVSDN-QLASLPALPSELCKLWAYNNQLTSLP---MLPSGLQELSVSD 190 (622)
T ss_dssp -CCTTCCEEECCSSC-CSCCCCC--CTTCCEEECCSS-CCSCCCCCCTTCCEEECCSSCCSCCC---CCCTTCCEEECCS
T ss_pred -CCCCcCEEECCCCC-CCcCCCC--CCCCCEEECcCC-cCCCcCCccCCCCEEECCCCCCCCCc---ccCCCCcEEECCC
Confidence 67899999999986 4456653 589999999997 56778888899999999999999998 5578999999999
Q ss_pred CcCCccccccccCCCCCcEEEcCCC-CCcCCccCCCCCCCCEEEecCCCCCcchhhhhcCCCCCEEeccCCCCCCcCCCC
Q 043008 162 CKKLKRVSTSICKFKSLVWLSLNND-LTAIPQEIGCLSSLECLNLGGNNFEGLPASIKQISRLECLDLSYCNSLQSLPEL 240 (517)
Q Consensus 162 ~~~l~~lp~~l~~l~~L~~L~Ls~~-l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~l 240 (517)
|.+.+ +|. .+++|+.|++++| +..+|. .+++|+.|+|++|+|+.+| ..+++|+.|+|++ +.++.+|..
T Consensus 191 N~l~~-l~~---~~~~L~~L~L~~N~l~~l~~---~~~~L~~L~Ls~N~L~~lp---~~l~~L~~L~Ls~-N~L~~lp~~ 259 (622)
T 3g06_A 191 NQLAS-LPT---LPSELYKLWAYNNRLTSLPA---LPSGLKELIVSGNRLTSLP---VLPSELKELMVSG-NRLTSLPML 259 (622)
T ss_dssp SCCSC-CCC---CCTTCCEEECCSSCCSSCCC---CCTTCCEEECCSSCCSCCC---CCCTTCCEEECCS-SCCSCCCCC
T ss_pred CCCCC-CCC---ccchhhEEECcCCcccccCC---CCCCCCEEEccCCccCcCC---CCCCcCcEEECCC-CCCCcCCcc
Confidence 97654 554 3578999999775 466765 3589999999999999998 5678999999998 578899998
Q ss_pred CCCccEEecccccCcCcCCCCCchhhhcchhhHHhhhcCCCC
Q 043008 241 PLHLEVLLATNCKRLQSLPEIPSCLEELDASVLEKLSKHSFG 282 (517)
Q Consensus 241 ~~~L~~L~~~~c~~l~~l~~~~~~L~~L~~l~~~~Ls~n~~~ 282 (517)
+++|+.|++.++ .+. ..|..+..++.+..++|++|+++
T Consensus 260 ~~~L~~L~Ls~N-~L~---~lp~~l~~l~~L~~L~L~~N~l~ 297 (622)
T 3g06_A 260 PSGLLSLSVYRN-QLT---RLPESLIHLSSETTVNLEGNPLS 297 (622)
T ss_dssp CTTCCEEECCSS-CCC---SCCGGGGGSCTTCEEECCSCCCC
T ss_pred cccCcEEeCCCC-CCC---cCCHHHhhccccCEEEecCCCCC
Confidence 899999999886 333 55778899999999999999876
No 36
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.89 E-value=4.7e-22 Score=213.68 Aligned_cols=146 Identities=12% Similarity=0.141 Sum_probs=102.4
Q ss_pred CCCCCCCCCCCCCccEEeccCCCCCccc-cccCCCCCCccEEEccCCCCCCCCC-CCCCCCCccEEeeccccCCcccCcc
Q 043008 3 PLRTLPSNFKPKNLVELNLPYGHKVVQI-WEGKKRAFKLKFINLSHSQCHIKIP-DPSETPNLERIDILNCTNPACVLSS 80 (517)
Q Consensus 3 pl~~lP~~f~~~~L~~L~L~~n~~l~~l-~~~~~~l~~L~~L~Ls~~~~l~~~p-~l~~l~~L~~L~L~~~~~l~~~p~s 80 (517)
.++++|..+ +++|++|+|++| .+..+ +..+..+++|++|+|++|.+....| .|.++++|++|+|++|......+..
T Consensus 16 ~l~~ip~~~-~~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 93 (549)
T 2z81_A 16 SFTSIPSGL-TAAMKSLDLSFN-KITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSW 93 (549)
T ss_dssp CCSSCCSCC-CTTCCEEECCSS-CCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHH
T ss_pred ccccccccC-CCCccEEECcCC-ccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHH
Confidence 466777765 478888888888 78776 5677888888888888887655554 3788888888888888665555555
Q ss_pred ccCCCCCCEEeccCCcCcc-ccCCCC-CCCCCcEEEEecCCCCCccCC-CC---CCCcEEEeecccCcc-cCCcCCC
Q 043008 81 ITNFNHLSMLCFRHCKNLR-HFPNNL-HFVCPIIIDFSYCVNLTEFPQ-IS---GNIIDLILTETAIEE-VPSSTEC 150 (517)
Q Consensus 81 i~~l~~L~~L~L~~~~~l~-~lp~~~-~l~sL~~L~L~~c~~l~~~p~-~~---~~L~~L~L~~~~i~~-lp~~i~~ 150 (517)
++++++|++|++++|.... ..|..+ ++++|++|++++|..+..+|. .+ .+|++|++++|.+.. .|..+..
T Consensus 94 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~ 170 (549)
T 2z81_A 94 FGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKS 170 (549)
T ss_dssp HTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTT
T ss_pred hccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhc
Confidence 8888888888888876554 345556 788888888888766666652 33 334667777776663 4444433
No 37
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.89 E-value=1.1e-22 Score=229.89 Aligned_cols=260 Identities=15% Similarity=0.098 Sum_probs=196.5
Q ss_pred cEEeccCCCCCccccccCCCCCCccEEEccCCCCCCCCC-CCCCCCCccEEeeccccCCccc-CccccCCCCCCEEeccC
Q 043008 17 VELNLPYGHKVVQIWEGKKRAFKLKFINLSHSQCHIKIP-DPSETPNLERIDILNCTNPACV-LSSITNFNHLSMLCFRH 94 (517)
Q Consensus 17 ~~L~L~~n~~l~~l~~~~~~l~~L~~L~Ls~~~~l~~~p-~l~~l~~L~~L~L~~~~~l~~~-p~si~~l~~L~~L~L~~ 94 (517)
+..+.+++ +++.+|. -.++|+.|||++|.+....| +|.++++|++|+|++|.....+ |..|+++++|++|+|++
T Consensus 7 ~~~dcs~~-~L~~vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~ 82 (844)
T 3j0a_A 7 RIAFYRFC-NLTQVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGS 82 (844)
T ss_dssp EEEEESCC-CSSCCCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTT
T ss_pred eEEEccCC-CCCCCCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCC
Confidence 35677788 8999987 45799999999999766656 5999999999999999776666 77899999999999999
Q ss_pred CcCccccCCCC-CCCCCcEEEEecCCCCCccCC-----CCCCCcEEEeecccCcccC--CcCCCCCCccEEEcccCcCCc
Q 043008 95 CKNLRHFPNNL-HFVCPIIIDFSYCVNLTEFPQ-----ISGNIIDLILTETAIEEVP--SSTECLTNLQYLFLCSCKKLK 166 (517)
Q Consensus 95 ~~~l~~lp~~~-~l~sL~~L~L~~c~~l~~~p~-----~~~~L~~L~L~~~~i~~lp--~~i~~l~~L~~L~l~~~~~l~ 166 (517)
|......|..+ ++++|++|+|++|.....+|. .+.+|+.|+|++|.+..++ ..++++++|++|++++|.+.+
T Consensus 83 N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~ 162 (844)
T 3j0a_A 83 SKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFL 162 (844)
T ss_dssp CCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCC
T ss_pred CcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCe
Confidence 98887888888 999999999999876665554 2456799999999998663 468999999999999998766
Q ss_pred cccccccCC--CC------------------------------CcEEEcCCCC--CcCCcc-------------------
Q 043008 167 RVSTSICKF--KS------------------------------LVWLSLNNDL--TAIPQE------------------- 193 (517)
Q Consensus 167 ~lp~~l~~l--~~------------------------------L~~L~Ls~~l--~~lp~~------------------- 193 (517)
..+..+..+ ++ |+.|++++|. ..++..
T Consensus 163 ~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~ 242 (844)
T 3j0a_A 163 VCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHI 242 (844)
T ss_dssp CCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSC
T ss_pred eCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccc
Confidence 555444332 22 6667666541 111111
Q ss_pred -----------------CCC--CCCCCEEEecCCCCCcc-hhhhhcCCCCCEEeccCCCCCCcCCCCC---CCccEEecc
Q 043008 194 -----------------IGC--LSSLECLNLGGNNFEGL-PASIKQISRLECLDLSYCNSLQSLPELP---LHLEVLLAT 250 (517)
Q Consensus 194 -----------------l~~--l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~L~~c~~l~~lp~l~---~~L~~L~~~ 250 (517)
+.. .++|+.|+|++|.+..+ |..+..+++|+.|+|++|+.-...|..+ ++|+.|++.
T Consensus 243 ~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls 322 (844)
T 3j0a_A 243 MGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLS 322 (844)
T ss_dssp CBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEE
T ss_pred ccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECC
Confidence 111 26788999999988864 5678889999999999855444334433 577777776
Q ss_pred cccCcCcCCCCCchhhhcchhhHHhhhcCCCCC
Q 043008 251 NCKRLQSLPEIPSCLEELDASVLEKLSKHSFGE 283 (517)
Q Consensus 251 ~c~~l~~l~~~~~~L~~L~~l~~~~Ls~n~~~~ 283 (517)
++. .....+..+..++.+..++|++|.+..
T Consensus 323 ~N~---l~~~~~~~~~~l~~L~~L~L~~N~i~~ 352 (844)
T 3j0a_A 323 YNL---LGELYSSNFYGLPKVAYIDLQKNHIAI 352 (844)
T ss_dssp SCC---CSCCCSCSCSSCTTCCEEECCSCCCCC
T ss_pred CCC---CCccCHHHhcCCCCCCEEECCCCCCCc
Confidence 643 234446677888888888999887753
No 38
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.89 E-value=1.2e-22 Score=209.30 Aligned_cols=263 Identities=14% Similarity=0.035 Sum_probs=205.5
Q ss_pred CCCCCCccEEeccCCCCCcccccc-CCCCCCccEEEccCCCCCCCCC-CCCCCCCccEEeeccccCCcccCccccCCCCC
Q 043008 10 NFKPKNLVELNLPYGHKVVQIWEG-KKRAFKLKFINLSHSQCHIKIP-DPSETPNLERIDILNCTNPACVLSSITNFNHL 87 (517)
Q Consensus 10 ~f~~~~L~~L~L~~n~~l~~l~~~-~~~l~~L~~L~Ls~~~~l~~~p-~l~~l~~L~~L~L~~~~~l~~~p~si~~l~~L 87 (517)
...+++++.|+++++ .++.+|.. +..+++|++|+|++|.+....+ .+..+++|++|+|++|......|..++.+++|
T Consensus 41 ~~~l~~l~~l~l~~~-~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 119 (390)
T 3o6n_A 41 DITLNNQKIVTFKNS-TMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLL 119 (390)
T ss_dssp SGGGCCCSEEEEESC-EESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred ccccCCceEEEecCC-chhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCC
Confidence 346799999999999 99999865 5889999999999998655555 58999999999999998776667789999999
Q ss_pred CEEeccCCcCccccCCCC--CCCCCcEEEEecCCCCCccCCCC---CCCcEEEeecccCcccCCcCCCCCCccEEEcccC
Q 043008 88 SMLCFRHCKNLRHFPNNL--HFVCPIIIDFSYCVNLTEFPQIS---GNIIDLILTETAIEEVPSSTECLTNLQYLFLCSC 162 (517)
Q Consensus 88 ~~L~L~~~~~l~~lp~~~--~l~sL~~L~L~~c~~l~~~p~~~---~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~~ 162 (517)
++|++++|... .+|..+ ++++|++|++++|......|..+ .+|+.|++++|.++.++ +..+++|+.|++++|
T Consensus 120 ~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~l~~L~~L~l~~n 196 (390)
T 3o6n_A 120 TVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYN 196 (390)
T ss_dssp CEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC--GGGCTTCSEEECCSS
T ss_pred CEEECCCCccC-cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc--cccccccceeecccc
Confidence 99999999655 666654 89999999999987655445444 56799999999998775 455666666666655
Q ss_pred cCCc------------------cccccccCCCCCcEEEcCCCCCcCCccCCCCCCCCEEEecCCCCCcc-hhhhhcCCCC
Q 043008 163 KKLK------------------RVSTSICKFKSLVWLSLNNDLTAIPQEIGCLSSLECLNLGGNNFEGL-PASIKQISRL 223 (517)
Q Consensus 163 ~~l~------------------~lp~~l~~l~~L~~L~Ls~~l~~lp~~l~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L 223 (517)
.+.. .+|. ...++|+.|+++++.-.-+..+..+++|++|+|++|.++.+ |..+..+++|
T Consensus 197 ~l~~~~~~~~L~~L~l~~n~l~~~~~--~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 274 (390)
T 3o6n_A 197 LLSTLAIPIAVEELDASHNSINVVRG--PVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRL 274 (390)
T ss_dssp CCSEEECCSSCSEEECCSSCCCEEEC--CCCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSC
T ss_pred cccccCCCCcceEEECCCCeeeeccc--cccccccEEECCCCCCcccHHHcCCCCccEEECCCCcCCCcChhHccccccC
Confidence 4332 1121 22467888888776433345788899999999999999975 7889999999
Q ss_pred CEEeccCCCCCCcCCCC---CCCccEEecccccCcCcCCCCCchhhhcchhhHHhhhcCCCCC
Q 043008 224 ECLDLSYCNSLQSLPEL---PLHLEVLLATNCKRLQSLPEIPSCLEELDASVLEKLSKHSFGE 283 (517)
Q Consensus 224 ~~L~L~~c~~l~~lp~l---~~~L~~L~~~~c~~l~~l~~~~~~L~~L~~l~~~~Ls~n~~~~ 283 (517)
+.|+|++ +.++.+|.. .++|+.|++.++. + ...|..+..++.++.++|++|+++.
T Consensus 275 ~~L~L~~-n~l~~~~~~~~~l~~L~~L~L~~n~-l---~~~~~~~~~l~~L~~L~L~~N~i~~ 332 (390)
T 3o6n_A 275 ERLYISN-NRLVALNLYGQPIPTLKVLDLSHNH-L---LHVERNQPQFDRLENLYLDHNSIVT 332 (390)
T ss_dssp CEEECCS-SCCCEEECSSSCCTTCCEEECCSSC-C---CCCGGGHHHHTTCSEEECCSSCCCC
T ss_pred CEEECCC-CcCcccCcccCCCCCCCEEECCCCc-c---eecCccccccCcCCEEECCCCccce
Confidence 9999998 567777754 3688888888763 3 3456678888889999999998763
No 39
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.89 E-value=8.5e-22 Score=198.15 Aligned_cols=226 Identities=19% Similarity=0.168 Sum_probs=190.2
Q ss_pred CCCCCCCC-CC-CCCCccEEeccCCCCCccc-cccCCCCCCccEEEccCCCCCCCCCC-CCCCCCccEEeeccccCCccc
Q 043008 2 YPLRTLPS-NF-KPKNLVELNLPYGHKVVQI-WEGKKRAFKLKFINLSHSQCHIKIPD-PSETPNLERIDILNCTNPACV 77 (517)
Q Consensus 2 ~pl~~lP~-~f-~~~~L~~L~L~~n~~l~~l-~~~~~~l~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~~~~l~~~ 77 (517)
..++.+|. .| ++++|++|+|++| .+..+ |..+..+++|++|+|++|. ++.+|. +. ++|++|++++|......
T Consensus 62 n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~l~~~~~--~~L~~L~l~~n~l~~~~ 137 (330)
T 1xku_A 62 NKITEIKDGDFKNLKNLHTLILINN-KISKISPGAFAPLVKLERLYLSKNQ-LKELPEKMP--KTLQELRVHENEITKVR 137 (330)
T ss_dssp SCCCCBCTTTTTTCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSSC-CSBCCSSCC--TTCCEEECCSSCCCBBC
T ss_pred CcCCEeChhhhccCCCCCEEECCCC-cCCeeCHHHhcCCCCCCEEECCCCc-CCccChhhc--ccccEEECCCCcccccC
Confidence 34667776 45 8999999999999 89888 8899999999999999998 456774 33 89999999999776666
Q ss_pred CccccCCCCCCEEeccCCcCcc--ccCCCC-CCCCCcEEEEecCCCCCccCCC-CCCCcEEEeecccCccc-CCcCCCCC
Q 043008 78 LSSITNFNHLSMLCFRHCKNLR--HFPNNL-HFVCPIIIDFSYCVNLTEFPQI-SGNIIDLILTETAIEEV-PSSTECLT 152 (517)
Q Consensus 78 p~si~~l~~L~~L~L~~~~~l~--~lp~~~-~l~sL~~L~L~~c~~l~~~p~~-~~~L~~L~L~~~~i~~l-p~~i~~l~ 152 (517)
+..+.++++|++|++++|.... ..+..+ ++++|+.|++++|. +..+|.. ..+|+.|++++|.++.+ |..+..++
T Consensus 138 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~ 216 (330)
T 1xku_A 138 KSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN-ITTIPQGLPPSLTELHLDGNKITKVDAASLKGLN 216 (330)
T ss_dssp HHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC-CCSCCSSCCTTCSEEECTTSCCCEECTGGGTTCT
T ss_pred HhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCc-cccCCccccccCCEEECCCCcCCccCHHHhcCCC
Confidence 6679999999999999997753 556666 89999999999975 5556644 46899999999999976 57799999
Q ss_pred CccEEEcccCcCCccccccccCCCCCcEEEcCCC-CCcCCccCCCCCCCCEEEecCCCCCcchhh-hh------cCCCCC
Q 043008 153 NLQYLFLCSCKKLKRVSTSICKFKSLVWLSLNND-LTAIPQEIGCLSSLECLNLGGNNFEGLPAS-IK------QISRLE 224 (517)
Q Consensus 153 ~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~Ls~~-l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~-l~------~l~~L~ 224 (517)
+|+.|++++|.+.+..+..+..+++|+.|++++| +..+|..+..+++|++|++++|+|+.+|.. +. ....|+
T Consensus 217 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~ 296 (330)
T 1xku_A 217 NLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYS 296 (330)
T ss_dssp TCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCS
T ss_pred CCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChhhccCCCcCEEECCCCcCCccChhhcCCccccccccccc
Confidence 9999999999888777778999999999999775 688999999999999999999999988743 22 246788
Q ss_pred EEeccCCC
Q 043008 225 CLDLSYCN 232 (517)
Q Consensus 225 ~L~L~~c~ 232 (517)
.|++.+|+
T Consensus 297 ~l~l~~N~ 304 (330)
T 1xku_A 297 GVSLFSNP 304 (330)
T ss_dssp EEECCSSS
T ss_pred ceEeecCc
Confidence 88888754
No 40
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.89 E-value=4.7e-23 Score=224.24 Aligned_cols=263 Identities=14% Similarity=0.038 Sum_probs=207.9
Q ss_pred CCCCCCccEEeccCCCCCcccccc-CCCCCCccEEEccCCCCCCCCC-CCCCCCCccEEeeccccCCcccCccccCCCCC
Q 043008 10 NFKPKNLVELNLPYGHKVVQIWEG-KKRAFKLKFINLSHSQCHIKIP-DPSETPNLERIDILNCTNPACVLSSITNFNHL 87 (517)
Q Consensus 10 ~f~~~~L~~L~L~~n~~l~~l~~~-~~~l~~L~~L~Ls~~~~l~~~p-~l~~l~~L~~L~L~~~~~l~~~p~si~~l~~L 87 (517)
...+.+++.|++++| .+..+|.. +..+++|++|+|++|.+....| .|+.+++|++|+|++|......|..++++++|
T Consensus 47 ~l~l~~l~~l~l~~~-~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 125 (597)
T 3oja_B 47 DITLNNQKIVTFKNS-TMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLL 125 (597)
T ss_dssp SGGGCCCSEEEESSC-EESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred cccCCCceEEEeeCC-CCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCC
Confidence 346789999999999 99999765 5789999999999999665555 59999999999999998777667778999999
Q ss_pred CEEeccCCcCccccCCC-C-CCCCCcEEEEecCCCCCccCCCC---CCCcEEEeecccCcccCCcCCCCCCccEEEcccC
Q 043008 88 SMLCFRHCKNLRHFPNN-L-HFVCPIIIDFSYCVNLTEFPQIS---GNIIDLILTETAIEEVPSSTECLTNLQYLFLCSC 162 (517)
Q Consensus 88 ~~L~L~~~~~l~~lp~~-~-~l~sL~~L~L~~c~~l~~~p~~~---~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~~ 162 (517)
++|+|++|... .+|.. + ++++|++|++++|......|..+ .+|+.|++++|.+..++ +..+++|+.|++++|
T Consensus 126 ~~L~L~~n~l~-~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~l~~L~~L~l~~n 202 (597)
T 3oja_B 126 TVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYN 202 (597)
T ss_dssp CEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC--GGGCTTCSEEECCSS
T ss_pred CEEEeeCCCCC-CCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC--hhhhhhhhhhhcccC
Confidence 99999999655 56655 4 89999999999987665555544 46799999999999775 455666666666665
Q ss_pred cCCc------------------cccccccCCCCCcEEEcCCCCCcCCccCCCCCCCCEEEecCCCCCcc-hhhhhcCCCC
Q 043008 163 KKLK------------------RVSTSICKFKSLVWLSLNNDLTAIPQEIGCLSSLECLNLGGNNFEGL-PASIKQISRL 223 (517)
Q Consensus 163 ~~l~------------------~lp~~l~~l~~L~~L~Ls~~l~~lp~~l~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L 223 (517)
.+.+ .++.. ..++|+.|++++|.-.-+..+..+++|+.|+|++|.+..+ |..+..+++|
T Consensus 203 ~l~~l~~~~~L~~L~ls~n~l~~~~~~--~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 280 (597)
T 3oja_B 203 LLSTLAIPIAVEELDASHNSINVVRGP--VNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRL 280 (597)
T ss_dssp CCSEEECCTTCSEEECCSSCCCEEECS--CCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSC
T ss_pred ccccccCCchhheeeccCCcccccccc--cCCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHhcCccCC
Confidence 4432 11111 1357888888776544457788999999999999999975 7899999999
Q ss_pred CEEeccCCCCCCcCCCC---CCCccEEecccccCcCcCCCCCchhhhcchhhHHhhhcCCCCC
Q 043008 224 ECLDLSYCNSLQSLPEL---PLHLEVLLATNCKRLQSLPEIPSCLEELDASVLEKLSKHSFGE 283 (517)
Q Consensus 224 ~~L~L~~c~~l~~lp~l---~~~L~~L~~~~c~~l~~l~~~~~~L~~L~~l~~~~Ls~n~~~~ 283 (517)
+.|+|++ +.+..+|.. .++|+.|++.++. +...|..+..++.+..++|++|.+++
T Consensus 281 ~~L~Ls~-N~l~~l~~~~~~l~~L~~L~Ls~N~----l~~i~~~~~~l~~L~~L~L~~N~l~~ 338 (597)
T 3oja_B 281 ERLYISN-NRLVALNLYGQPIPTLKVLDLSHNH----LLHVERNQPQFDRLENLYLDHNSIVT 338 (597)
T ss_dssp CEEECTT-SCCCEEECSSSCCTTCCEEECCSSC----CCCCGGGHHHHTTCSEEECCSSCCCC
T ss_pred CEEECCC-CCCCCCCcccccCCCCcEEECCCCC----CCccCcccccCCCCCEEECCCCCCCC
Confidence 9999998 567777754 4688888888763 33567778889999999999999873
No 41
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.89 E-value=1.7e-22 Score=205.25 Aligned_cols=246 Identities=17% Similarity=0.166 Sum_probs=194.9
Q ss_pred CCCCCCCCCCCCCccEEeccCCCCCccccc-cCCCCCCccEEEccCCCCCCCCCC-CCCCCCccEEeeccccCCcccCc-
Q 043008 3 PLRTLPSNFKPKNLVELNLPYGHKVVQIWE-GKKRAFKLKFINLSHSQCHIKIPD-PSETPNLERIDILNCTNPACVLS- 79 (517)
Q Consensus 3 pl~~lP~~f~~~~L~~L~L~~n~~l~~l~~-~~~~l~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~~~~l~~~p~- 79 (517)
.++++|..+ +++|++|++++| .++.++. .+..+++|++|+|++|.+....|+ +.++++|++|+|++|... .++.
T Consensus 42 ~l~~iP~~~-~~~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~ 118 (353)
T 2z80_A 42 SLNSIPSGL-TEAVKSLDLSNN-RITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS-NLSSS 118 (353)
T ss_dssp TCSSCCTTC-CTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS-SCCHH
T ss_pred Ccccccccc-cccCcEEECCCC-cCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCC-cCCHh
Confidence 467888876 469999999999 9998865 789999999999999986655554 899999999999998655 4554
Q ss_pred cccCCCCCCEEeccCCcCccccCC--CC-CCCCCcEEEEecCCCCCccC-CCC---CCCcEEEeecccCccc-CCcCCCC
Q 043008 80 SITNFNHLSMLCFRHCKNLRHFPN--NL-HFVCPIIIDFSYCVNLTEFP-QIS---GNIIDLILTETAIEEV-PSSTECL 151 (517)
Q Consensus 80 si~~l~~L~~L~L~~~~~l~~lp~--~~-~l~sL~~L~L~~c~~l~~~p-~~~---~~L~~L~L~~~~i~~l-p~~i~~l 151 (517)
.++++++|++|++++|... .+|. .+ .+++|++|++++|..++.++ ..+ .+|+.|++++|.+..+ |..+..+
T Consensus 119 ~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l 197 (353)
T 2z80_A 119 WFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSI 197 (353)
T ss_dssp HHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTC
T ss_pred HhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhcc
Confidence 4899999999999998655 5665 55 89999999999997777664 344 4569999999999966 7889999
Q ss_pred CCccEEEcccCcCCccccccccCCCCCcEEEcCCCC-CcCCc----cCCCCCCCCEEEecCCCCCc-----chhhhhcCC
Q 043008 152 TNLQYLFLCSCKKLKRVSTSICKFKSLVWLSLNNDL-TAIPQ----EIGCLSSLECLNLGGNNFEG-----LPASIKQIS 221 (517)
Q Consensus 152 ~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~Ls~~l-~~lp~----~l~~l~~L~~L~Ls~n~l~~-----lp~~l~~l~ 221 (517)
++|++|++++|......+..+..+++|+.|++++|. ..++. .....+.++.++|+++.+.. +|..+..++
T Consensus 198 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~ 277 (353)
T 2z80_A 198 QNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQIS 277 (353)
T ss_dssp SEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCT
T ss_pred ccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhccc
Confidence 999999999997644333345568999999997753 33321 13356788999999998874 788899999
Q ss_pred CCCEEeccCCCCCCcCCCC----CCCccEEeccccc
Q 043008 222 RLECLDLSYCNSLQSLPEL----PLHLEVLLATNCK 253 (517)
Q Consensus 222 ~L~~L~L~~c~~l~~lp~l----~~~L~~L~~~~c~ 253 (517)
+|+.|+|++ +.++.+|.. .++|+.|++.+++
T Consensus 278 ~L~~L~Ls~-N~l~~i~~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 278 GLLELEFSR-NQLKSVPDGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp TCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCEEECCC-CCCCccCHHHHhcCCCCCEEEeeCCC
Confidence 999999998 567788863 2577777776653
No 42
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.89 E-value=1.8e-22 Score=200.72 Aligned_cols=206 Identities=22% Similarity=0.292 Sum_probs=102.7
Q ss_pred CCCCCCCCCCCCccEEeccCCCCCcccccc-CCCCCCccEEEccCCCCCCC--CC-CCCCCCCccEEeeccccCCcccCc
Q 043008 4 LRTLPSNFKPKNLVELNLPYGHKVVQIWEG-KKRAFKLKFINLSHSQCHIK--IP-DPSETPNLERIDILNCTNPACVLS 79 (517)
Q Consensus 4 l~~lP~~f~~~~L~~L~L~~n~~l~~l~~~-~~~l~~L~~L~Ls~~~~l~~--~p-~l~~l~~L~~L~L~~~~~l~~~p~ 79 (517)
++++|..+ +++|++|+|++| .++.++.. +..+++|++|+|++|.+... .| .+..+++|++|+|++|. +..+|.
T Consensus 19 l~~ip~~~-~~~l~~L~L~~n-~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~-i~~l~~ 95 (306)
T 2z66_A 19 LTSVPTGI-PSSATRLELESN-KLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSS 95 (306)
T ss_dssp CSSCCSCC-CTTCCEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCS-EEEEEE
T ss_pred cccCCCCC-CCCCCEEECCCC-ccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCc-cccChh
Confidence 44555544 345666666666 55555443 45566666666666553211 11 23445566666666653 334555
Q ss_pred cccCCCCCCEEeccCCcCccccC-CCC-CCCCCcEEEEecCCCCCccCCCCCCCcEEEeecccCcccCCcCCCCCCccEE
Q 043008 80 SITNFNHLSMLCFRHCKNLRHFP-NNL-HFVCPIIIDFSYCVNLTEFPQISGNIIDLILTETAIEEVPSSTECLTNLQYL 157 (517)
Q Consensus 80 si~~l~~L~~L~L~~~~~l~~lp-~~~-~l~sL~~L~L~~c~~l~~~p~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L 157 (517)
.+..+++|++|++++|......+ ..+ .+++|++|++++|......| ..+..+++|+.|
T Consensus 96 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--------------------~~~~~l~~L~~L 155 (306)
T 2z66_A 96 NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN--------------------GIFNGLSSLEVL 155 (306)
T ss_dssp EEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECST--------------------TTTTTCTTCCEE
T ss_pred hcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccch--------------------hhcccCcCCCEE
Confidence 55566666666666654333222 223 55555555555544332222 334444555555
Q ss_pred EcccCcCCc-cccccccCCCCCcEEEcCCC-CCcC-CccCCCCCCCCEEEecCCCCCcchh-hhhcCCCCCEEeccCCC
Q 043008 158 FLCSCKKLK-RVSTSICKFKSLVWLSLNND-LTAI-PQEIGCLSSLECLNLGGNNFEGLPA-SIKQISRLECLDLSYCN 232 (517)
Q Consensus 158 ~l~~~~~l~-~lp~~l~~l~~L~~L~Ls~~-l~~l-p~~l~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~L~~c~ 232 (517)
++++|.+.+ ..|..+..+++|+.|++++| +..+ |..+..+++|++|+|++|.++.++. .+..+++|+.|+|++|+
T Consensus 156 ~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 234 (306)
T 2z66_A 156 KMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNH 234 (306)
T ss_dssp ECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSC
T ss_pred ECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCC
Confidence 555554433 34444555555555555443 2322 3345555555555555555555432 44555555555555543
No 43
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.89 E-value=4.5e-22 Score=219.54 Aligned_cols=271 Identities=20% Similarity=0.199 Sum_probs=197.2
Q ss_pred CCCCccEEeccCCCCCccc-cccCCCCCCccEEEccCCCC-CCCCCC--CCC--CCCccEEeeccccCCcccCccccCCC
Q 043008 12 KPKNLVELNLPYGHKVVQI-WEGKKRAFKLKFINLSHSQC-HIKIPD--PSE--TPNLERIDILNCTNPACVLSSITNFN 85 (517)
Q Consensus 12 ~~~~L~~L~L~~n~~l~~l-~~~~~~l~~L~~L~Ls~~~~-l~~~p~--l~~--l~~L~~L~L~~~~~l~~~p~si~~l~ 85 (517)
.+++|++|++++| .+..+ +..+..+++|++|+|++|.. ...++. +.. .++|+.|++++|......|..+..++
T Consensus 327 ~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~ 405 (680)
T 1ziw_A 327 WLKCLEHLNMEDN-DIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLG 405 (680)
T ss_dssp TCTTCCEEECCSC-CBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCT
T ss_pred cCCCCCEEECCCC-ccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCC
Confidence 4566666666666 55544 34455666666666666542 122221 221 24666777777766666677888888
Q ss_pred CCCEEeccCCcCccccCC-CC-CCCCCcEEEEecCCCCCccCCC---CCCCcEEEeecccCc---ccCCcCCCCCCccEE
Q 043008 86 HLSMLCFRHCKNLRHFPN-NL-HFVCPIIIDFSYCVNLTEFPQI---SGNIIDLILTETAIE---EVPSSTECLTNLQYL 157 (517)
Q Consensus 86 ~L~~L~L~~~~~l~~lp~-~~-~l~sL~~L~L~~c~~l~~~p~~---~~~L~~L~L~~~~i~---~lp~~i~~l~~L~~L 157 (517)
+|+.|++++|.....+|. .+ ++++|++|++++|......+.. ..+|+.|++++|.+. .+|..+..+++|+.|
T Consensus 406 ~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L 485 (680)
T 1ziw_A 406 HLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTIL 485 (680)
T ss_dssp TCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEE
T ss_pred CCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEE
Confidence 899999988887766664 44 8888999999887644333333 456789999988875 568889999999999
Q ss_pred EcccCcCCccccccccCCCCCcEEEcCCC-CCcC-----C----ccCCCCCCCCEEEecCCCCCcchh-hhhcCCCCCEE
Q 043008 158 FLCSCKKLKRVSTSICKFKSLVWLSLNND-LTAI-----P----QEIGCLSSLECLNLGGNNFEGLPA-SIKQISRLECL 226 (517)
Q Consensus 158 ~l~~~~~l~~lp~~l~~l~~L~~L~Ls~~-l~~l-----p----~~l~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L 226 (517)
++++|.+.+..+..+..+++|+.|++++| +..+ | ..+..+++|+.|+|++|+++.+|. .+..+++|+.|
T Consensus 486 ~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L 565 (680)
T 1ziw_A 486 DLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKII 565 (680)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred ECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCccee
Confidence 99999888777778999999999999876 3333 2 237889999999999999999986 58999999999
Q ss_pred eccCCCCCCcCCCC-C---CCccEEecccccCcCcCCCCCchhh-hcchhhHHhhhcCCCCCccee
Q 043008 227 DLSYCNSLQSLPEL-P---LHLEVLLATNCKRLQSLPEIPSCLE-ELDASVLEKLSKHSFGEEYRI 287 (517)
Q Consensus 227 ~L~~c~~l~~lp~l-~---~~L~~L~~~~c~~l~~l~~~~~~L~-~L~~l~~~~Ls~n~~~~~~~l 287 (517)
+|++ +.++.+|.. + ++|+.|++.++ .++ ...+..+. .++.+..++|++||+.|.|..
T Consensus 566 ~Ls~-N~l~~l~~~~~~~l~~L~~L~L~~N-~l~--~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~ 627 (680)
T 1ziw_A 566 DLGL-NNLNTLPASVFNNQVSLKSLNLQKN-LIT--SVEKKVFGPAFRNLTELDMRFNPFDCTCES 627 (680)
T ss_dssp ECCS-SCCCCCCTTTTTTCTTCCEEECTTS-CCC--BCCHHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred ECCC-CCCCcCCHhHhCCCCCCCEEECCCC-cCC--ccChhHhcccccccCEEEccCCCcccCCcc
Confidence 9987 677788753 2 67888887764 233 33445565 678888899999999998874
No 44
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.88 E-value=1.6e-21 Score=205.64 Aligned_cols=264 Identities=18% Similarity=0.216 Sum_probs=165.1
Q ss_pred CCCCCCCCCCCCCCccEEeccCCCCCccccccCCCCCCccEEEccCCCCCCCCCCCCCCCCccEEeeccccCCcccCccc
Q 043008 2 YPLRTLPSNFKPKNLVELNLPYGHKVVQIWEGKKRAFKLKFINLSHSQCHIKIPDPSETPNLERIDILNCTNPACVLSSI 81 (517)
Q Consensus 2 ~pl~~lP~~f~~~~L~~L~L~~n~~l~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~~~~l~~~p~si 81 (517)
+.++++|....+++|++|+|++| .+..++. +..+++|++|++++|.+. .++.+..+++|++|++++|.. ..++. +
T Consensus 56 ~~i~~l~~~~~l~~L~~L~Ls~n-~l~~~~~-~~~l~~L~~L~l~~n~l~-~~~~~~~l~~L~~L~L~~n~l-~~~~~-~ 130 (466)
T 1o6v_A 56 LGIKSIDGVEYLNNLTQINFSNN-QLTDITP-LKNLTKLVDILMNNNQIA-DITPLANLTNLTGLTLFNNQI-TDIDP-L 130 (466)
T ss_dssp SCCCCCTTGGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSCCC-CCGGGTTCTTCCEEECCSSCC-CCCGG-G
T ss_pred CCCccCcchhhhcCCCEEECCCC-ccCCchh-hhccccCCEEECCCCccc-cChhhcCCCCCCEEECCCCCC-CCChH-H
Confidence 45667775447888888888888 8887765 778888888888888744 344477788888888887743 33433 7
Q ss_pred cCCCCCCEEeccCCcCccccCC--------------------CC-CCCCCcEEEEecCCCCCccCC--CCCCCcEEEeec
Q 043008 82 TNFNHLSMLCFRHCKNLRHFPN--------------------NL-HFVCPIIIDFSYCVNLTEFPQ--ISGNIIDLILTE 138 (517)
Q Consensus 82 ~~l~~L~~L~L~~~~~l~~lp~--------------------~~-~l~sL~~L~L~~c~~l~~~p~--~~~~L~~L~L~~ 138 (517)
+.+++|++|++++|.... ++. .+ ++++|+.|++++|. +..++. .+.+|+.|++++
T Consensus 131 ~~l~~L~~L~l~~n~l~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~l~~ 208 (466)
T 1o6v_A 131 KNLTNLNRLELSSNTISD-ISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNK-VSDISVLAKLTNLESLIATN 208 (466)
T ss_dssp TTCTTCSEEEEEEEEECC-CGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSC-CCCCGGGGGCTTCSEEECCS
T ss_pred cCCCCCCEEECCCCccCC-ChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCc-CCCChhhccCCCCCEEEecC
Confidence 777777777777765322 111 13 56777778887765 333332 245667788888
Q ss_pred ccCcccCCcCCCCCCccEEEcccCcCCccccccccCCCCCcEEEcCCCC-CcCCccCCCCCCCCEEEecCCCCCcchhhh
Q 043008 139 TAIEEVPSSTECLTNLQYLFLCSCKKLKRVSTSICKFKSLVWLSLNNDL-TAIPQEIGCLSSLECLNLGGNNFEGLPASI 217 (517)
Q Consensus 139 ~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~Ls~~l-~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l 217 (517)
|.+..++. ++.+++|+.|++++|.+... ..+..+++|+.|+++++. ..++. +..+++|+.|++++|.++.+|. +
T Consensus 209 n~l~~~~~-~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~ 283 (466)
T 1o6v_A 209 NQISDITP-LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQISNISP-L 283 (466)
T ss_dssp SCCCCCGG-GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCCCCGG-G
T ss_pred Cccccccc-ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh-hhcCCCCCEEECCCCccCcccc-c
Confidence 77776654 66677777777777755432 246667777777776543 33333 6666777777777777766664 6
Q ss_pred hcCCCCCEEeccCCCCCCcCCCC--CCCccEEecccccCcCcCCCCCchhhhcchhhHHhhhcCCCCC
Q 043008 218 KQISRLECLDLSYCNSLQSLPEL--PLHLEVLLATNCKRLQSLPEIPSCLEELDASVLEKLSKHSFGE 283 (517)
Q Consensus 218 ~~l~~L~~L~L~~c~~l~~lp~l--~~~L~~L~~~~c~~l~~l~~~~~~L~~L~~l~~~~Ls~n~~~~ 283 (517)
..+++|+.|++++| .++.++.+ .++|+.|++.++. +... +. +..++.++.+++++|.+++
T Consensus 284 ~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~L~~n~-l~~~---~~-~~~l~~L~~L~l~~n~l~~ 345 (466)
T 1o6v_A 284 AGLTALTNLELNEN-QLEDISPISNLKNLTYLTLYFNN-ISDI---SP-VSSLTKLQRLFFYNNKVSD 345 (466)
T ss_dssp TTCTTCSEEECCSS-CCSCCGGGGGCTTCSEEECCSSC-CSCC---GG-GGGCTTCCEEECCSSCCCC
T ss_pred cCCCccCeEEcCCC-cccCchhhcCCCCCCEEECcCCc-CCCc---hh-hccCccCCEeECCCCccCC
Confidence 66667777777663 34444432 2456666665542 1111 11 4455555555666665553
No 45
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.88 E-value=6.4e-22 Score=218.33 Aligned_cols=246 Identities=19% Similarity=0.176 Sum_probs=168.4
Q ss_pred CCCCCCCCCCCCCccEEeccCCCCCcccc-ccCCCCCCccEEEccCCCCCCCCCC-CCCCCCccEEeeccccCCcccCc-
Q 043008 3 PLRTLPSNFKPKNLVELNLPYGHKVVQIW-EGKKRAFKLKFINLSHSQCHIKIPD-PSETPNLERIDILNCTNPACVLS- 79 (517)
Q Consensus 3 pl~~lP~~f~~~~L~~L~L~~n~~l~~l~-~~~~~l~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~~~~l~~~p~- 79 (517)
.+.++|..+ +++|++|+|++| .++.++ ..+..+++|++|+|++|.+....|+ +.++++|++|+|++|... .+|.
T Consensus 15 ~L~~ip~~~-~~~l~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~ 91 (680)
T 1ziw_A 15 KLTQVPDDL-PTNITVLNLTHN-QLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS-QLSDK 91 (680)
T ss_dssp CCSSCCSCS-CTTCSEEECCSS-CCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCC-CCCTT
T ss_pred Ccccccccc-CCCCcEEECCCC-CCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccC-ccChh
Confidence 467788776 478999999999 888875 4588889999999999886665565 778889999999888544 4444
Q ss_pred cccCCCCCCEEeccCCcCccccCCCC-CCCCCcEEEEecCCCCCccCCC---CCCCcEEEeecccCcccCCc---CCCCC
Q 043008 80 SITNFNHLSMLCFRHCKNLRHFPNNL-HFVCPIIIDFSYCVNLTEFPQI---SGNIIDLILTETAIEEVPSS---TECLT 152 (517)
Q Consensus 80 si~~l~~L~~L~L~~~~~l~~lp~~~-~l~sL~~L~L~~c~~l~~~p~~---~~~L~~L~L~~~~i~~lp~~---i~~l~ 152 (517)
+|+++++|++|++++|......|..+ ++++|++|++++|......|.. +.+|+.|++++|.++.++.. ...++
T Consensus 92 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~ 171 (680)
T 1ziw_A 92 TFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANS 171 (680)
T ss_dssp TTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTC
T ss_pred hhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccc
Confidence 68888999999999887655445566 8888999999887665555554 34568888888888866543 23557
Q ss_pred CccEEEcccCcCCccccccccCCC---------------------------CCcEEEcCCC-CC-cCCccCCCCC--CCC
Q 043008 153 NLQYLFLCSCKKLKRVSTSICKFK---------------------------SLVWLSLNND-LT-AIPQEIGCLS--SLE 201 (517)
Q Consensus 153 ~L~~L~l~~~~~l~~lp~~l~~l~---------------------------~L~~L~Ls~~-l~-~lp~~l~~l~--~L~ 201 (517)
+|+.|++++|.+.+..|..+..++ +|+.|+++++ +. ..|..+..++ +|+
T Consensus 172 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~ 251 (680)
T 1ziw_A 172 SLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLT 251 (680)
T ss_dssp EESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCC
T ss_pred cccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCC
Confidence 888888888877666665555443 3444444433 22 2234444443 377
Q ss_pred EEEecCCCCCcc-hhhhhcCCCCCEEeccCCCCCCcCCCCC---CCccEEeccc
Q 043008 202 CLNLGGNNFEGL-PASIKQISRLECLDLSYCNSLQSLPELP---LHLEVLLATN 251 (517)
Q Consensus 202 ~L~Ls~n~l~~l-p~~l~~l~~L~~L~L~~c~~l~~lp~l~---~~L~~L~~~~ 251 (517)
.|+|++|+++.+ |..+..+++|+.|++++|+.....|..+ ++|+.|++.+
T Consensus 252 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 305 (680)
T 1ziw_A 252 MLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKR 305 (680)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTT
T ss_pred EEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccc
Confidence 777777777754 3566777777777777654433333322 4556666554
No 46
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.88 E-value=1.3e-21 Score=206.53 Aligned_cols=254 Identities=18% Similarity=0.185 Sum_probs=166.4
Q ss_pred CCCCccEEeccCCCCCccccccCCCCCCccEEEccCCCCCCCCCCCCCCCCccEEeeccccCCcccCccccCCCCCCEEe
Q 043008 12 KPKNLVELNLPYGHKVVQIWEGKKRAFKLKFINLSHSQCHIKIPDPSETPNLERIDILNCTNPACVLSSITNFNHLSMLC 91 (517)
Q Consensus 12 ~~~~L~~L~L~~n~~l~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~~~~l~~~p~si~~l~~L~~L~ 91 (517)
.+++|+.|+++++ .++.++ ++..+++|++|+|++|.+ ..+|.+..+++|++|++++|... .++. ++++++|++|+
T Consensus 44 ~l~~l~~L~l~~~-~i~~l~-~~~~l~~L~~L~Ls~n~l-~~~~~~~~l~~L~~L~l~~n~l~-~~~~-~~~l~~L~~L~ 118 (466)
T 1o6v_A 44 DLDQVTTLQADRL-GIKSID-GVEYLNNLTQINFSNNQL-TDITPLKNLTKLVDILMNNNQIA-DITP-LANLTNLTGLT 118 (466)
T ss_dssp HHHTCCEEECCSS-CCCCCT-TGGGCTTCCEEECCSSCC-CCCGGGTTCTTCCEEECCSSCCC-CCGG-GTTCTTCCEEE
T ss_pred HhccccEEecCCC-CCccCc-chhhhcCCCEEECCCCcc-CCchhhhccccCCEEECCCCccc-cChh-hcCCCCCCEEE
Confidence 3578999999999 899886 478899999999999984 45555999999999999998654 4444 99999999999
Q ss_pred ccCCcCccccCCCC-CCCCCcEEEEecCCCCCccCC--CC---------------------CCCcEEEeecccCcccCCc
Q 043008 92 FRHCKNLRHFPNNL-HFVCPIIIDFSYCVNLTEFPQ--IS---------------------GNIIDLILTETAIEEVPSS 147 (517)
Q Consensus 92 L~~~~~l~~lp~~~-~l~sL~~L~L~~c~~l~~~p~--~~---------------------~~L~~L~L~~~~i~~lp~~ 147 (517)
+++|... .++. + ++++|++|++++|. +..++. .+ .+|+.|++++|.+..++.
T Consensus 119 L~~n~l~-~~~~-~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~- 194 (466)
T 1o6v_A 119 LFNNQIT-DIDP-LKNLTNLNRLELSSNT-ISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISV- 194 (466)
T ss_dssp CCSSCCC-CCGG-GTTCTTCSEEEEEEEE-ECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGG-
T ss_pred CCCCCCC-CChH-HcCCCCCCEEECCCCc-cCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCChh-
Confidence 9998654 4454 6 99999999999975 333332 12 234555555555554432
Q ss_pred CCCCCCccEEEcccCcCCccccccccCCCCCcEEEcCCCC-CcCCccCCCCCCCCEEEecCCCCCcchhhhhcCCCCCEE
Q 043008 148 TECLTNLQYLFLCSCKKLKRVSTSICKFKSLVWLSLNNDL-TAIPQEIGCLSSLECLNLGGNNFEGLPASIKQISRLECL 226 (517)
Q Consensus 148 i~~l~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~Ls~~l-~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L 226 (517)
+..+++|+.|++++|...+..| +..+++|+.|+++++. ..+ ..+..+++|+.|++++|.+..++. +..+++|+.|
T Consensus 195 l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L 270 (466)
T 1o6v_A 195 LAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI-GTLASLTNLTDLDLANNQISNLAP-LSGLTKLTEL 270 (466)
T ss_dssp GGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCSEE
T ss_pred hccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc-hhhhcCCCCCEEECCCCccccchh-hhcCCCCCEE
Confidence 4555555555555554444333 4555666666665542 332 245566666666666666666554 6666666666
Q ss_pred eccCCCCCCcCCCC--CCCccEEecccccCcCcCCCCCchhhhcchhhHHhhhcCCCCCc
Q 043008 227 DLSYCNSLQSLPEL--PLHLEVLLATNCKRLQSLPEIPSCLEELDASVLEKLSKHSFGEE 284 (517)
Q Consensus 227 ~L~~c~~l~~lp~l--~~~L~~L~~~~c~~l~~l~~~~~~L~~L~~l~~~~Ls~n~~~~~ 284 (517)
++++| .+..++.+ .++|+.|++.++. +.. .+ .+..++.++.++|++|.+++.
T Consensus 271 ~l~~n-~l~~~~~~~~l~~L~~L~L~~n~-l~~---~~-~~~~l~~L~~L~L~~n~l~~~ 324 (466)
T 1o6v_A 271 KLGAN-QISNISPLAGLTALTNLELNENQ-LED---IS-PISNLKNLTYLTLYFNNISDI 324 (466)
T ss_dssp ECCSS-CCCCCGGGTTCTTCSEEECCSSC-CSC---CG-GGGGCTTCSEEECCSSCCSCC
T ss_pred ECCCC-ccCccccccCCCccCeEEcCCCc-ccC---ch-hhcCCCCCCEEECcCCcCCCc
Confidence 66653 34444432 2466666665542 221 11 156666677777777776643
No 47
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.88 E-value=4.5e-21 Score=201.57 Aligned_cols=246 Identities=23% Similarity=0.300 Sum_probs=133.6
Q ss_pred CCccEEeccCCCCCccccccCCCCCCccEEEccCCCCCCCCCCCCCCCCccEEeeccccCCcccCccccCCCCCCEEecc
Q 043008 14 KNLVELNLPYGHKVVQIWEGKKRAFKLKFINLSHSQCHIKIPDPSETPNLERIDILNCTNPACVLSSITNFNHLSMLCFR 93 (517)
Q Consensus 14 ~~L~~L~L~~n~~l~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~~~~l~~~p~si~~l~~L~~L~L~ 93 (517)
++|++|++++| .++.+| .+..+++|++|++++|.+ +.+|+. .++|++|++++|... .+| .++.+++|++|+++
T Consensus 131 ~~L~~L~L~~n-~l~~lp-~~~~l~~L~~L~l~~N~l-~~lp~~--~~~L~~L~L~~n~l~-~l~-~~~~l~~L~~L~l~ 203 (454)
T 1jl5_A 131 PLLEYLGVSNN-QLEKLP-ELQNSSFLKIIDVDNNSL-KKLPDL--PPSLEFIAAGNNQLE-ELP-ELQNLPFLTAIYAD 203 (454)
T ss_dssp TTCCEEECCSS-CCSSCC-CCTTCTTCCEEECCSSCC-SCCCCC--CTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECC
T ss_pred CCCCEEECcCC-CCCCCc-ccCCCCCCCEEECCCCcC-cccCCC--cccccEEECcCCcCC-cCc-cccCCCCCCEEECC
Confidence 45666666666 666555 356666666666666653 334432 235555555555322 243 35555555555555
Q ss_pred CCcCc-------------------cccCCCC-CCCCCcEEEEecCCCCCccCCCCCCCcEEEeecccCcccCCcCCCCCC
Q 043008 94 HCKNL-------------------RHFPNNL-HFVCPIIIDFSYCVNLTEFPQISGNIIDLILTETAIEEVPSSTECLTN 153 (517)
Q Consensus 94 ~~~~l-------------------~~lp~~~-~l~sL~~L~L~~c~~l~~~p~~~~~L~~L~L~~~~i~~lp~~i~~l~~ 153 (517)
+|... ..+|. + .+++|++|++++|. +..+|....+|+.|++++|.+..+|.. .++
T Consensus 204 ~N~l~~l~~~~~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~l~~N~-l~~l~~~~~~L~~L~l~~N~l~~l~~~---~~~ 278 (454)
T 1jl5_A 204 NNSLKKLPDLPLSLESIVAGNNILEELPE-LQNLPFLTTIYADNNL-LKTLPDLPPSLEALNVRDNYLTDLPEL---PQS 278 (454)
T ss_dssp SSCCSSCCCCCTTCCEEECCSSCCSSCCC-CTTCTTCCEEECCSSC-CSSCCSCCTTCCEEECCSSCCSCCCCC---CTT
T ss_pred CCcCCcCCCCcCcccEEECcCCcCCcccc-cCCCCCCCEEECCCCc-CCcccccccccCEEECCCCcccccCcc---cCc
Confidence 54322 24443 3 55556666665542 344555555566666666666655543 255
Q ss_pred ccEEEcccCcCCccccccccCCCCCcEEEcCCC-CCcCCccCCCCCCCCEEEecCCCCCcchhhhhcCCCCCEEeccCCC
Q 043008 154 LQYLFLCSCKKLKRVSTSICKFKSLVWLSLNND-LTAIPQEIGCLSSLECLNLGGNNFEGLPASIKQISRLECLDLSYCN 232 (517)
Q Consensus 154 L~~L~l~~~~~l~~lp~~l~~l~~L~~L~Ls~~-l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~c~ 232 (517)
|+.|++++|.+.+ +|. -.++|+.|++++| +..++. ..++|+.|++++|+++++|.. +++|+.|++++ +
T Consensus 279 L~~L~ls~N~l~~-l~~---~~~~L~~L~l~~N~l~~i~~---~~~~L~~L~Ls~N~l~~lp~~---~~~L~~L~L~~-N 347 (454)
T 1jl5_A 279 LTFLDVSENIFSG-LSE---LPPNLYYLNASSNEIRSLCD---LPPSLEELNVSNNKLIELPAL---PPRLERLIASF-N 347 (454)
T ss_dssp CCEEECCSSCCSE-ESC---CCTTCCEEECCSSCCSEECC---CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCS-S
T ss_pred CCEEECcCCccCc-ccC---cCCcCCEEECcCCcCCcccC---CcCcCCEEECCCCcccccccc---CCcCCEEECCC-C
Confidence 6666666665433 111 1145666666554 233321 125788888888888887754 57888888887 4
Q ss_pred CCCcCCCCCCCccEEecccccCcCcCCCCCchhhhc-------------chhhHHhhhcCCCCC
Q 043008 233 SLQSLPELPLHLEVLLATNCKRLQSLPEIPSCLEEL-------------DASVLEKLSKHSFGE 283 (517)
Q Consensus 233 ~l~~lp~l~~~L~~L~~~~c~~l~~l~~~~~~L~~L-------------~~l~~~~Ls~n~~~~ 283 (517)
.++.+|..+++|+.|++.++ .+..++..|..+..| +.++.+++++|++.+
T Consensus 348 ~l~~lp~~l~~L~~L~L~~N-~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~ 410 (454)
T 1jl5_A 348 HLAEVPELPQNLKQLHVEYN-PLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLRE 410 (454)
T ss_dssp CCSCCCCCCTTCCEEECCSS-CCSSCCCCCTTCCEEECCC------------------------
T ss_pred ccccccchhhhccEEECCCC-CCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCc
Confidence 67778887788888888764 455555667777776 677888888888775
No 48
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.88 E-value=8.7e-22 Score=198.32 Aligned_cols=225 Identities=17% Similarity=0.156 Sum_probs=187.3
Q ss_pred CCCCCCC-CC-CCCCccEEeccCCCCCccc-cccCCCCCCccEEEccCCCCCCCCCC-CCCCCCccEEeeccccCCcccC
Q 043008 3 PLRTLPS-NF-KPKNLVELNLPYGHKVVQI-WEGKKRAFKLKFINLSHSQCHIKIPD-PSETPNLERIDILNCTNPACVL 78 (517)
Q Consensus 3 pl~~lP~-~f-~~~~L~~L~L~~n~~l~~l-~~~~~~l~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~~~~l~~~p 78 (517)
.++.+|. .| ++++|++|+|++| .+..+ |..+..+++|++|+|++|.+ ..+|. +. ++|++|++++|......+
T Consensus 65 ~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l-~~l~~~~~--~~L~~L~l~~n~i~~~~~ 140 (332)
T 2ft3_A 65 DISELRKDDFKGLQHLYALVLVNN-KISKIHEKAFSPLRKLQKLYISKNHL-VEIPPNLP--SSLVELRIHDNRIRKVPK 140 (332)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSS-CCCEECGGGSTTCTTCCEEECCSSCC-CSCCSSCC--TTCCEEECCSSCCCCCCS
T ss_pred cCCccCHhHhhCCCCCcEEECCCC-ccCccCHhHhhCcCCCCEEECCCCcC-CccCcccc--ccCCEEECCCCccCccCH
Confidence 4566654 46 8999999999999 89987 78899999999999999984 46774 43 899999999997665555
Q ss_pred ccccCCCCCCEEeccCCcCcc--ccCCCC-CCCCCcEEEEecCCCCCccCCC-CCCCcEEEeecccCcccC-CcCCCCCC
Q 043008 79 SSITNFNHLSMLCFRHCKNLR--HFPNNL-HFVCPIIIDFSYCVNLTEFPQI-SGNIIDLILTETAIEEVP-SSTECLTN 153 (517)
Q Consensus 79 ~si~~l~~L~~L~L~~~~~l~--~lp~~~-~l~sL~~L~L~~c~~l~~~p~~-~~~L~~L~L~~~~i~~lp-~~i~~l~~ 153 (517)
..++.+++|+.|++++|.... ..|..+ .+ +|+.|++++|. +..+|.. ..+|+.|++++|.+..++ ..+..+++
T Consensus 141 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~-l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~ 218 (332)
T 2ft3_A 141 GVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAK-LTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSK 218 (332)
T ss_dssp GGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSB-CSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTT
T ss_pred hHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCC-CCccCccccCCCCEEECCCCcCCccCHHHhcCCCC
Confidence 568999999999999998753 556666 55 99999999975 5556654 467999999999999776 67899999
Q ss_pred ccEEEcccCcCCccccccccCCCCCcEEEcCCC-CCcCCccCCCCCCCCEEEecCCCCCcchhh-hhc------CCCCCE
Q 043008 154 LQYLFLCSCKKLKRVSTSICKFKSLVWLSLNND-LTAIPQEIGCLSSLECLNLGGNNFEGLPAS-IKQ------ISRLEC 225 (517)
Q Consensus 154 L~~L~l~~~~~l~~lp~~l~~l~~L~~L~Ls~~-l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~-l~~------l~~L~~ 225 (517)
|+.|++++|.+.+..+..+..+++|+.|++++| +..+|..+..+++|+.|++++|+++.+|.. +.. ...|+.
T Consensus 219 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~ 298 (332)
T 2ft3_A 219 LYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNG 298 (332)
T ss_dssp CSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSE
T ss_pred CCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccc
Confidence 999999999888877788999999999999765 688999999999999999999999988643 322 467888
Q ss_pred EeccCCCC
Q 043008 226 LDLSYCNS 233 (517)
Q Consensus 226 L~L~~c~~ 233 (517)
|++.+|+.
T Consensus 299 L~l~~N~~ 306 (332)
T 2ft3_A 299 ISLFNNPV 306 (332)
T ss_dssp EECCSSSS
T ss_pred eEeecCcc
Confidence 88888653
No 49
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.88 E-value=1e-21 Score=206.33 Aligned_cols=245 Identities=17% Similarity=0.147 Sum_probs=134.9
Q ss_pred ccEEeccCCCCCccccccCCCCCCccEEEccCCCCCCCCC-CCCCCCCccEEeeccccCCcccCccccCCCCCCEEeccC
Q 043008 16 LVELNLPYGHKVVQIWEGKKRAFKLKFINLSHSQCHIKIP-DPSETPNLERIDILNCTNPACVLSSITNFNHLSMLCFRH 94 (517)
Q Consensus 16 L~~L~L~~n~~l~~l~~~~~~l~~L~~L~Ls~~~~l~~~p-~l~~l~~L~~L~L~~~~~l~~~p~si~~l~~L~~L~L~~ 94 (517)
...++.++. .+..+|.++. ++|+.|+|++|.+....| .|.++++|++|+|++|......+..|.++++|++|+|++
T Consensus 56 ~~~v~c~~~-~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 132 (452)
T 3zyi_A 56 FSKVVCTRR-GLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD 132 (452)
T ss_dssp SCEEECCSS-CCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CcEEEECCC-CcCccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence 445666665 6666665443 466667777666544444 366666677777766655544555666666666666666
Q ss_pred CcCccccCCCC-CCCCCcEEEEecCCCCCccCCCCCCCcEEEeecccCcccCC-cCCCCCCccEEEcccCcCCccccc-c
Q 043008 95 CKNLRHFPNNL-HFVCPIIIDFSYCVNLTEFPQISGNIIDLILTETAIEEVPS-STECLTNLQYLFLCSCKKLKRVST-S 171 (517)
Q Consensus 95 ~~~l~~lp~~~-~l~sL~~L~L~~c~~l~~~p~~~~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~l~~~~~l~~lp~-~ 171 (517)
|......+..+ .+++|++|++++| .+..+|. .+..+++|+.|++++|..++.++. .
T Consensus 133 n~l~~~~~~~~~~l~~L~~L~L~~N---------------------~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~ 191 (452)
T 3zyi_A 133 NWLTVIPSGAFEYLSKLRELWLRNN---------------------PIESIPSYAFNRVPSLMRLDLGELKKLEYISEGA 191 (452)
T ss_dssp SCCSBCCTTTSSSCTTCCEEECCSC---------------------CCCEECTTTTTTCTTCCEEECCCCTTCCEECTTT
T ss_pred CcCCccChhhhcccCCCCEEECCCC---------------------CcceeCHhHHhcCCcccEEeCCCCCCccccChhh
Confidence 65433222333 5666666666554 4444433 345555556666655544444443 3
Q ss_pred ccCCCCCcEEEcCCC-CCcCCccCCCCCCCCEEEecCCCCCcc-hhhhhcCCCCCEEeccCCCCCCcC-CCCC---CCcc
Q 043008 172 ICKFKSLVWLSLNND-LTAIPQEIGCLSSLECLNLGGNNFEGL-PASIKQISRLECLDLSYCNSLQSL-PELP---LHLE 245 (517)
Q Consensus 172 l~~l~~L~~L~Ls~~-l~~lp~~l~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~L~~c~~l~~l-p~l~---~~L~ 245 (517)
+.++++|+.|++++| +..+| .+..+++|+.|+|++|.++.+ |..+..+++|+.|+|++|+ +..+ |..+ ++|+
T Consensus 192 ~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~ 269 (452)
T 3zyi_A 192 FEGLFNLKYLNLGMCNIKDMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQ-VSLIERNAFDGLASLV 269 (452)
T ss_dssp TTTCTTCCEEECTTSCCSSCC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSC-CCEECTTTTTTCTTCC
T ss_pred ccCCCCCCEEECCCCcccccc-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCc-CceECHHHhcCCCCCC
Confidence 555556666666443 33333 355556666666666666553 4555666666666666533 3332 2222 3445
Q ss_pred EEecccccCcCcCCCCCchhhhcchhhHHhhhcCCCCCcceeee
Q 043008 246 VLLATNCKRLQSLPEIPSCLEELDASVLEKLSKHSFGEEYRIWS 289 (517)
Q Consensus 246 ~L~~~~c~~l~~l~~~~~~L~~L~~l~~~~Ls~n~~~~~~~l~~ 289 (517)
.|++.++ .+. ...+..+..++.+..++|++||+.+.|.+.+
T Consensus 270 ~L~L~~N-~l~--~~~~~~~~~l~~L~~L~L~~Np~~CdC~~~~ 310 (452)
T 3zyi_A 270 ELNLAHN-NLS--SLPHDLFTPLRYLVELHLHHNPWNCDCDILW 310 (452)
T ss_dssp EEECCSS-CCS--CCCTTSSTTCTTCCEEECCSSCEECSTTTHH
T ss_pred EEECCCC-cCC--ccChHHhccccCCCEEEccCCCcCCCCCchH
Confidence 5554443 122 2223445556666777888899888775543
No 50
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.88 E-value=1.1e-21 Score=205.30 Aligned_cols=246 Identities=16% Similarity=0.149 Sum_probs=136.9
Q ss_pred CccEEeccCCCCCccccccCCCCCCccEEEccCCCCCCCCC-CCCCCCCccEEeeccccCCcccCccccCCCCCCEEecc
Q 043008 15 NLVELNLPYGHKVVQIWEGKKRAFKLKFINLSHSQCHIKIP-DPSETPNLERIDILNCTNPACVLSSITNFNHLSMLCFR 93 (517)
Q Consensus 15 ~L~~L~L~~n~~l~~l~~~~~~l~~L~~L~Ls~~~~l~~~p-~l~~l~~L~~L~L~~~~~l~~~p~si~~l~~L~~L~L~ 93 (517)
....++.++. .++.+|.++. ++++.|+|++|.+....+ .|.++++|++|+|++|......+..|.++++|++|+|+
T Consensus 44 ~~~~v~c~~~-~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~ 120 (440)
T 3zyj_A 44 QFSKVICVRK-NLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF 120 (440)
T ss_dssp TSCEEECCSC-CCSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred CCCEEEeCCC-CcCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence 3456677766 7777776654 577777777777544443 37777777777777776555555667777777777777
Q ss_pred CCcCccccCCCC-CCCCCcEEEEecCCCCCccCCCCCCCcEEEeecccCcccCC-cCCCCCCccEEEcccCcCCccccc-
Q 043008 94 HCKNLRHFPNNL-HFVCPIIIDFSYCVNLTEFPQISGNIIDLILTETAIEEVPS-STECLTNLQYLFLCSCKKLKRVST- 170 (517)
Q Consensus 94 ~~~~l~~lp~~~-~l~sL~~L~L~~c~~l~~~p~~~~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~l~~~~~l~~lp~- 170 (517)
+|......+..+ .+++|++|++++|. +..+|. .+..+++|+.|++++|...+.++.
T Consensus 121 ~n~l~~~~~~~~~~l~~L~~L~L~~N~---------------------i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~ 179 (440)
T 3zyj_A 121 DNRLTTIPNGAFVYLSKLKELWLRNNP---------------------IESIPSYAFNRIPSLRRLDLGELKRLSYISEG 179 (440)
T ss_dssp SSCCSSCCTTTSCSCSSCCEEECCSCC---------------------CCEECTTTTTTCTTCCEEECCCCTTCCEECTT
T ss_pred CCcCCeeCHhHhhccccCceeeCCCCc---------------------ccccCHHHhhhCcccCEeCCCCCCCcceeCcc
Confidence 775443333334 66677766666643 333332 344455555555555444444333
Q ss_pred cccCCCCCcEEEcCCC-CCcCCccCCCCCCCCEEEecCCCCCcc-hhhhhcCCCCCEEeccCCCCCCcCC-CCC---CCc
Q 043008 171 SICKFKSLVWLSLNND-LTAIPQEIGCLSSLECLNLGGNNFEGL-PASIKQISRLECLDLSYCNSLQSLP-ELP---LHL 244 (517)
Q Consensus 171 ~l~~l~~L~~L~Ls~~-l~~lp~~l~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~L~~c~~l~~lp-~l~---~~L 244 (517)
.+.++++|+.|++++| +..+| .+..+++|+.|+|++|+++.+ |..+..+++|+.|+|++| .++.++ ..+ ++|
T Consensus 180 ~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L 257 (440)
T 3zyj_A 180 AFEGLSNLRYLNLAMCNLREIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQS-QIQVIERNAFDNLQSL 257 (440)
T ss_dssp TTTTCSSCCEEECTTSCCSSCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTSSTTCTTC
T ss_pred hhhcccccCeecCCCCcCcccc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCC-ceeEEChhhhcCCCCC
Confidence 3445555555555443 33333 244555555555555555543 445555555555555543 233322 221 344
Q ss_pred cEEecccccCcCcCCCCCchhhhcchhhHHhhhcCCCCCcceeee
Q 043008 245 EVLLATNCKRLQSLPEIPSCLEELDASVLEKLSKHSFGEEYRIWS 289 (517)
Q Consensus 245 ~~L~~~~c~~l~~l~~~~~~L~~L~~l~~~~Ls~n~~~~~~~l~~ 289 (517)
+.|++.++ ......+..+..++.+..++|++||+.+.|.+.+
T Consensus 258 ~~L~L~~N---~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~l~~ 299 (440)
T 3zyj_A 258 VEINLAHN---NLTLLPHDLFTPLHHLERIHLHHNPWNCNCDILW 299 (440)
T ss_dssp CEEECTTS---CCCCCCTTTTSSCTTCCEEECCSSCEECSSTTHH
T ss_pred CEEECCCC---CCCccChhHhccccCCCEEEcCCCCccCCCCchH
Confidence 44444332 1112223345556666677888899888775443
No 51
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.88 E-value=3e-21 Score=203.12 Aligned_cols=262 Identities=16% Similarity=0.129 Sum_probs=206.7
Q ss_pred CCCCCCCCCCCCCccEEeccCCCCCccccccCCCCCCccEEEccCCCCCCCCCCCCCCCCccEEeeccccCCcccCcccc
Q 043008 3 PLRTLPSNFKPKNLVELNLPYGHKVVQIWEGKKRAFKLKFINLSHSQCHIKIPDPSETPNLERIDILNCTNPACVLSSIT 82 (517)
Q Consensus 3 pl~~lP~~f~~~~L~~L~L~~n~~l~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~~~~l~~~p~si~ 82 (517)
.++.+| ...+++|++|++++| .+..++ +..+++|++|+|++|.+ ..+| ++.+++|++|++++|.... ++ ++
T Consensus 75 ~l~~~~-~~~l~~L~~L~Ls~N-~l~~~~--~~~l~~L~~L~L~~N~l-~~l~-~~~l~~L~~L~l~~N~l~~-l~--l~ 145 (457)
T 3bz5_A 75 NITTLD-LSQNTNLTYLACDSN-KLTNLD--VTPLTKLTYLNCDTNKL-TKLD-VSQNPLLTYLNCARNTLTE-ID--VS 145 (457)
T ss_dssp CCSCCC-CTTCTTCSEEECCSS-CCSCCC--CTTCTTCCEEECCSSCC-SCCC-CTTCTTCCEEECTTSCCSC-CC--CT
T ss_pred cCCeEc-cccCCCCCEEECcCC-CCceee--cCCCCcCCEEECCCCcC-Ceec-CCCCCcCCEEECCCCccce-ec--cc
Confidence 455665 237899999999999 899885 88999999999999985 4465 8999999999999986544 43 88
Q ss_pred CCCCCCEEeccCCcCccccCCCC-CCCCCcEEEEecCCCCCccC-CCCCCCcEEEeecccCcccCCcCCCCCCccEEEcc
Q 043008 83 NFNHLSMLCFRHCKNLRHFPNNL-HFVCPIIIDFSYCVNLTEFP-QISGNIIDLILTETAIEEVPSSTECLTNLQYLFLC 160 (517)
Q Consensus 83 ~l~~L~~L~L~~~~~l~~lp~~~-~l~sL~~L~L~~c~~l~~~p-~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~ 160 (517)
.+++|++|++++|...+.++ + .+++|+.|++++|. ++.+| ....+|+.|++++|.++.++ +..+++|+.|+++
T Consensus 146 ~l~~L~~L~l~~n~~~~~~~--~~~l~~L~~L~ls~n~-l~~l~l~~l~~L~~L~l~~N~l~~~~--l~~l~~L~~L~Ls 220 (457)
T 3bz5_A 146 HNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNK-ITELDVSQNKLLNRLNCDTNNITKLD--LNQNIQLTFLDCS 220 (457)
T ss_dssp TCTTCCEEECTTCSCCCCCC--CTTCTTCCEEECCSSC-CCCCCCTTCTTCCEEECCSSCCSCCC--CTTCTTCSEEECC
T ss_pred cCCcCCEEECCCCCcccccc--cccCCcCCEEECCCCc-cceeccccCCCCCEEECcCCcCCeec--cccCCCCCEEECc
Confidence 99999999999998777763 5 89999999999975 45565 33567899999999999884 8899999999999
Q ss_pred cCcCCccccccccCCCCCcEEEcCCC-CCcCCccCCCCCCCCEEEecCCCCCcchh---------hhhcCCCCCEEeccC
Q 043008 161 SCKKLKRVSTSICKFKSLVWLSLNND-LTAIPQEIGCLSSLECLNLGGNNFEGLPA---------SIKQISRLECLDLSY 230 (517)
Q Consensus 161 ~~~~l~~lp~~l~~l~~L~~L~Ls~~-l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~---------~l~~l~~L~~L~L~~ 230 (517)
+|.+.+ +| +..+++|+.|++++| +..+| ++.+++|+.|++++|+++.+.- .+..+++|+.|++++
T Consensus 221 ~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~--~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~ 295 (457)
T 3bz5_A 221 SNKLTE-ID--VTPLTQLTYFDCSVNPLTELD--VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTH 295 (457)
T ss_dssp SSCCSC-CC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCTTCCCCCCTT
T ss_pred CCcccc-cC--ccccCCCCEEEeeCCcCCCcC--HHHCCCCCEEeccCCCCCEEECCCCccCCcccccccccCCEEECCC
Confidence 998776 56 889999999999875 45555 5567777777766665554320 146789999999999
Q ss_pred CCCCCcCCCCCCCccEEecccccCcCcCCCCCc-----hhhhcchhhHHhhhcCCCCC
Q 043008 231 CNSLQSLPELPLHLEVLLATNCKRLQSLPEIPS-----CLEELDASVLEKLSKHSFGE 283 (517)
Q Consensus 231 c~~l~~lp~l~~~L~~L~~~~c~~l~~l~~~~~-----~L~~L~~l~~~~Ls~n~~~~ 283 (517)
|+.++.+|.....|+.|++.+|++|+.+..... .+..++.+..+++++|.+++
T Consensus 296 n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l~l~~l~~L~~L~l~~N~l~~ 353 (457)
T 3bz5_A 296 NTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTELDVSHNTKLKSLSCVNAHIQD 353 (457)
T ss_dssp CTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCSEEECCSSCCCB
T ss_pred CcccceeccCCCcceEechhhcccCCEEECCCCcccccccccCCcCcEEECCCCCCCC
Confidence 999998887667777777777777665433222 25566677778888888764
No 52
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.87 E-value=9.3e-22 Score=212.19 Aligned_cols=179 Identities=13% Similarity=0.111 Sum_probs=128.4
Q ss_pred CCCCCCCCCCCCCccEEeccCCCCCcccc-ccCCCCCCccEEEccCCCCCCCCCC-CCCCCCccEEeeccccCCcccCcc
Q 043008 3 PLRTLPSNFKPKNLVELNLPYGHKVVQIW-EGKKRAFKLKFINLSHSQCHIKIPD-PSETPNLERIDILNCTNPACVLSS 80 (517)
Q Consensus 3 pl~~lP~~f~~~~L~~L~L~~n~~l~~l~-~~~~~l~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~~~~l~~~p~s 80 (517)
-++++|..+ +++++.|+|++| .+..++ ..+..+++|++|+|++|.+....|+ |.++++|++|+|++|......|..
T Consensus 18 ~l~~ip~~l-~~~l~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 95 (570)
T 2z63_A 18 NFYKIPDNL-PFSTKNLDLSFN-PLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGA 95 (570)
T ss_dssp CCSSCCSSS-CSSCCEEECCSC-CCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTT
T ss_pred CccccCCCc-cccccEEEccCC-ccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhh
Confidence 367788766 578999999999 888774 5788899999999999985544443 888999999999998766666678
Q ss_pred ccCCCCCCEEeccCCcCccccCCCC-CCCCCcEEEEecCCCCC-ccCCCC---CCCcEEEeecccCcccC-CcCCCCCCc
Q 043008 81 ITNFNHLSMLCFRHCKNLRHFPNNL-HFVCPIIIDFSYCVNLT-EFPQIS---GNIIDLILTETAIEEVP-SSTECLTNL 154 (517)
Q Consensus 81 i~~l~~L~~L~L~~~~~l~~lp~~~-~l~sL~~L~L~~c~~l~-~~p~~~---~~L~~L~L~~~~i~~lp-~~i~~l~~L 154 (517)
|+++++|++|++++|.....-+..+ ++++|++|++++|.... .+|..+ .+|+.|++++|.+..++ ..+..+++|
T Consensus 96 ~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 175 (570)
T 2z63_A 96 FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175 (570)
T ss_dssp TTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTC
T ss_pred hcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhcc
Confidence 8999999999999886544333346 88999999999876544 456554 45688888888888664 445555555
Q ss_pred ----cEEEcccCcCCccccccccCCCCCcEEEcC
Q 043008 155 ----QYLFLCSCKKLKRVSTSICKFKSLVWLSLN 184 (517)
Q Consensus 155 ----~~L~l~~~~~l~~lp~~l~~l~~L~~L~Ls 184 (517)
+.|++++|...+..|..+... +|+.|+++
T Consensus 176 ~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~ 208 (570)
T 2z63_A 176 PLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLR 208 (570)
T ss_dssp TTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEE
T ss_pred chhhhhcccCCCCceecCHHHhccC-cceeEecc
Confidence 667777766554444443333 44444443
No 53
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.87 E-value=5.6e-21 Score=188.07 Aligned_cols=214 Identities=19% Similarity=0.177 Sum_probs=155.9
Q ss_pred cEEeccCCCCCccccccCCCCCCccEEEccCCCCCCCCCC-CCCCCCccEEeeccccCCcccCccccCCCCCCEEeccCC
Q 043008 17 VELNLPYGHKVVQIWEGKKRAFKLKFINLSHSQCHIKIPD-PSETPNLERIDILNCTNPACVLSSITNFNHLSMLCFRHC 95 (517)
Q Consensus 17 ~~L~L~~n~~l~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~~~~l~~~p~si~~l~~L~~L~L~~~ 95 (517)
++++.+++ .++.+|.++ .++|++|+|++|.+....+. +..+++|++|+|++|......|..++.+++|++|++++|
T Consensus 14 ~~~~c~~~-~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQ-GLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSS-CCSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcC-CcccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 56777777 777776544 35778888887775444333 777788888888877655555677777888888888877
Q ss_pred cCcccc-CCCC-CCCCCcEEEEecCCCCCccCCC---CCCCcEEEeecccCcccCCc-CCCCCCccEEEcccCcCCcccc
Q 043008 96 KNLRHF-PNNL-HFVCPIIIDFSYCVNLTEFPQI---SGNIIDLILTETAIEEVPSS-TECLTNLQYLFLCSCKKLKRVS 169 (517)
Q Consensus 96 ~~l~~l-p~~~-~l~sL~~L~L~~c~~l~~~p~~---~~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~l~~~~~l~~lp 169 (517)
..+..+ |..+ .+++|++|++++|......|.. +.+|+.|++++|.+..++.. +..+++|+.|++++|.+....+
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 170 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE 170 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECT
T ss_pred CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCH
Confidence 644444 4455 7778888888776654444443 34567788888888877654 7788888888888887665555
Q ss_pred ccccCCCCCcEEEcCCC-CCcC-CccCCCCCCCCEEEecCCCCCcch-hhhhcCCCCCEEeccCCCC
Q 043008 170 TSICKFKSLVWLSLNND-LTAI-PQEIGCLSSLECLNLGGNNFEGLP-ASIKQISRLECLDLSYCNS 233 (517)
Q Consensus 170 ~~l~~l~~L~~L~Ls~~-l~~l-p~~l~~l~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L~L~~c~~ 233 (517)
..+..+++|+.|++++| +..+ |..+..+++|+.|++++|+++.+| ..+..+++|+.|+|++|+.
T Consensus 171 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~ 237 (285)
T 1ozn_A 171 RAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW 237 (285)
T ss_dssp TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCE
T ss_pred HHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCc
Confidence 56888888888888775 3444 677888999999999999999876 4588899999999998643
No 54
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.87 E-value=1.4e-21 Score=192.28 Aligned_cols=208 Identities=17% Similarity=0.193 Sum_probs=177.1
Q ss_pred CCCCCCCCCCCCCccEEeccCCCCCcccc-ccCCCCCCccEEEccCCCCCCCCC-CCCCCCCccEEeeccccCCccc-Cc
Q 043008 3 PLRTLPSNFKPKNLVELNLPYGHKVVQIW-EGKKRAFKLKFINLSHSQCHIKIP-DPSETPNLERIDILNCTNPACV-LS 79 (517)
Q Consensus 3 pl~~lP~~f~~~~L~~L~L~~n~~l~~l~-~~~~~l~~L~~L~Ls~~~~l~~~p-~l~~l~~L~~L~L~~~~~l~~~-p~ 79 (517)
.++.+|..+ +++|++|++++| .+..++ ..+..+++|++|+|++|.+....| .+.++++|++|++++|..+..+ +.
T Consensus 22 ~l~~ip~~~-~~~l~~L~l~~n-~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~ 99 (285)
T 1ozn_A 22 GLQAVPVGI-PAASQRIFLHGN-RISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPA 99 (285)
T ss_dssp CCSSCCTTC-CTTCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTT
T ss_pred CcccCCcCC-CCCceEEEeeCC-cCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHH
Confidence 467788766 689999999999 999886 568999999999999998665556 4899999999999999745554 77
Q ss_pred cccCCCCCCEEeccCCcCccccCCCC-CCCCCcEEEEecCCCCCccCCC---CCCCcEEEeecccCcccCCc-CCCCCCc
Q 043008 80 SITNFNHLSMLCFRHCKNLRHFPNNL-HFVCPIIIDFSYCVNLTEFPQI---SGNIIDLILTETAIEEVPSS-TECLTNL 154 (517)
Q Consensus 80 si~~l~~L~~L~L~~~~~l~~lp~~~-~l~sL~~L~L~~c~~l~~~p~~---~~~L~~L~L~~~~i~~lp~~-i~~l~~L 154 (517)
.+..+++|++|++++|......|..+ ++++|++|++++|......+.. +.+|+.|++++|.++.+|.. +..+++|
T Consensus 100 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 179 (285)
T 1ozn_A 100 TFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSL 179 (285)
T ss_dssp TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred HhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCcccc
Confidence 89999999999999998777667777 8999999999997654333333 45679999999999988874 8899999
Q ss_pred cEEEcccCcCCccccccccCCCCCcEEEcCCC-CCcCCc-cCCCCCCCCEEEecCCCCCc
Q 043008 155 QYLFLCSCKKLKRVSTSICKFKSLVWLSLNND-LTAIPQ-EIGCLSSLECLNLGGNNFEG 212 (517)
Q Consensus 155 ~~L~l~~~~~l~~lp~~l~~l~~L~~L~Ls~~-l~~lp~-~l~~l~~L~~L~Ls~n~l~~ 212 (517)
+.|++++|.+.+..|..+..+++|+.|++++| +..+|. .+..+++|+.|+|++|.+..
T Consensus 180 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 239 (285)
T 1ozn_A 180 DRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC 239 (285)
T ss_dssp CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred CEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccC
Confidence 99999999988888999999999999999875 566664 48999999999999998873
No 55
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.86 E-value=4.1e-20 Score=194.25 Aligned_cols=222 Identities=23% Similarity=0.285 Sum_probs=138.1
Q ss_pred CCccEEEccCCCCCCCCCCCCCCCCccEEeeccccCCcccCccccCCCCCCEEeccCCcCccccCCCC-CCCCCcEEEEe
Q 043008 38 FKLKFINLSHSQCHIKIPDPSETPNLERIDILNCTNPACVLSSITNFNHLSMLCFRHCKNLRHFPNNL-HFVCPIIIDFS 116 (517)
Q Consensus 38 ~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~~~~l~~~p~si~~l~~L~~L~L~~~~~l~~lp~~~-~l~sL~~L~L~ 116 (517)
++|++|++++|.+ ..+|+++++++|++|++++|.. ..+|..+ .+|++|++++|... .+| .+ ++++|+.|+++
T Consensus 131 ~~L~~L~L~~n~l-~~lp~~~~l~~L~~L~l~~N~l-~~lp~~~---~~L~~L~L~~n~l~-~l~-~~~~l~~L~~L~l~ 203 (454)
T 1jl5_A 131 PLLEYLGVSNNQL-EKLPELQNSSFLKIIDVDNNSL-KKLPDLP---PSLEFIAAGNNQLE-ELP-ELQNLPFLTAIYAD 203 (454)
T ss_dssp TTCCEEECCSSCC-SSCCCCTTCTTCCEEECCSSCC-SCCCCCC---TTCCEEECCSSCCS-SCC-CCTTCTTCCEEECC
T ss_pred CCCCEEECcCCCC-CCCcccCCCCCCCEEECCCCcC-cccCCCc---ccccEEECcCCcCC-cCc-cccCCCCCCEEECC
Confidence 4677777777764 3467777777777777777743 3455433 47777788777544 366 35 88888888888
Q ss_pred cCCCCCccCCCCCCCcEEEeecccCcccCCcCCCCCCccEEEcccCcCCccccccccCCCCCcEEEcCCC-CCcCCccCC
Q 043008 117 YCVNLTEFPQISGNIIDLILTETAIEEVPSSTECLTNLQYLFLCSCKKLKRVSTSICKFKSLVWLSLNND-LTAIPQEIG 195 (517)
Q Consensus 117 ~c~~l~~~p~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~Ls~~-l~~lp~~l~ 195 (517)
+|. +..+|....+|+.|++++|.+..+|. +..+++|+.|++++|.+.+ +|. .+++|+.|++++| +..+|..
T Consensus 204 ~N~-l~~l~~~~~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~l~~N~l~~-l~~---~~~~L~~L~l~~N~l~~l~~~-- 275 (454)
T 1jl5_A 204 NNS-LKKLPDLPLSLESIVAGNNILEELPE-LQNLPFLTTIYADNNLLKT-LPD---LPPSLEALNVRDNYLTDLPEL-- 275 (454)
T ss_dssp SSC-CSSCCCCCTTCCEEECCSSCCSSCCC-CTTCTTCCEEECCSSCCSS-CCS---CCTTCCEEECCSSCCSCCCCC--
T ss_pred CCc-CCcCCCCcCcccEEECcCCcCCcccc-cCCCCCCCEEECCCCcCCc-ccc---cccccCEEECCCCcccccCcc--
Confidence 864 45577777788888888888888884 8888888889888886654 443 2367788888664 4555543
Q ss_pred CCCCCCEEEecCCCCCcchhhh---h-------------cC-CCCCEEeccCCCCCCcCCCCCCCccEEecccccCcCcC
Q 043008 196 CLSSLECLNLGGNNFEGLPASI---K-------------QI-SRLECLDLSYCNSLQSLPELPLHLEVLLATNCKRLQSL 258 (517)
Q Consensus 196 ~l~~L~~L~Ls~n~l~~lp~~l---~-------------~l-~~L~~L~L~~c~~l~~lp~l~~~L~~L~~~~c~~l~~l 258 (517)
+++|+.|++++|.++.+|... . .+ ++|+.|++++ +.++.+|..+++|+.|++.++ .++.+
T Consensus 276 -~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~-N~l~~lp~~~~~L~~L~L~~N-~l~~l 352 (454)
T 1jl5_A 276 -PQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSN-NKLIELPALPPRLERLIASFN-HLAEV 352 (454)
T ss_dssp -CTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCS-SCCSCCCCCCTTCCEEECCSS-CCSCC
T ss_pred -cCcCCEEECcCCccCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCC-CccccccccCCcCCEEECCCC-ccccc
Confidence 366777777777766544211 0 11 2455555554 334445544455555555443 22222
Q ss_pred CCCCchhhhcchhhHHhhhcCCCCC
Q 043008 259 PEIPSCLEELDASVLEKLSKHSFGE 283 (517)
Q Consensus 259 ~~~~~~L~~L~~l~~~~Ls~n~~~~ 283 (517)
+. .++.++.+++++|.+++
T Consensus 353 p~------~l~~L~~L~L~~N~l~~ 371 (454)
T 1jl5_A 353 PE------LPQNLKQLHVEYNPLRE 371 (454)
T ss_dssp CC------CCTTCCEEECCSSCCSS
T ss_pred cc------hhhhccEEECCCCCCCc
Confidence 22 13344445555565554
No 56
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.86 E-value=3e-22 Score=200.50 Aligned_cols=253 Identities=11% Similarity=0.042 Sum_probs=193.4
Q ss_pred CCccEEeccCCCCCcccc-ccCCCCCCccEEEccCCCCCCCCC-CCCCCCCccEEeeccccCCcccCccccCCCCCCEEe
Q 043008 14 KNLVELNLPYGHKVVQIW-EGKKRAFKLKFINLSHSQCHIKIP-DPSETPNLERIDILNCTNPACVLSSITNFNHLSMLC 91 (517)
Q Consensus 14 ~~L~~L~L~~n~~l~~l~-~~~~~l~~L~~L~Ls~~~~l~~~p-~l~~l~~L~~L~L~~~~~l~~~p~si~~l~~L~~L~ 91 (517)
..+..++++.+ .+...+ ..+..+++|++|+|++|.+....| .+..+++|++|+|++|......+ +..+++|++|+
T Consensus 10 ~~l~i~~ls~~-~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~ 86 (317)
T 3o53_A 10 NRYKIEKVTDS-SLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLD 86 (317)
T ss_dssp TEEEEESCCTT-THHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEE
T ss_pred CceeEeecccc-chhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEE
Confidence 44666777777 666553 334567899999999998655544 48899999999999986544433 89999999999
Q ss_pred ccCCcCccccCCCCCCCCCcEEEEecCCCCCccCCCCCCCcEEEeecccCcccCC-cCCCCCCccEEEcccCcCCccccc
Q 043008 92 FRHCKNLRHFPNNLHFVCPIIIDFSYCVNLTEFPQISGNIIDLILTETAIEEVPS-STECLTNLQYLFLCSCKKLKRVST 170 (517)
Q Consensus 92 L~~~~~l~~lp~~~~l~sL~~L~L~~c~~l~~~p~~~~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~l~~~~~l~~lp~ 170 (517)
+++|... .+| ..++|++|++++|......+..+.+|+.|++++|.++.++. .+..+++|+.|++++|.+.+..+.
T Consensus 87 Ls~n~l~-~l~---~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 162 (317)
T 3o53_A 87 LNNNYVQ-ELL---VGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFA 162 (317)
T ss_dssp CCSSEEE-EEE---ECTTCCEEECCSSCCSEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGG
T ss_pred CcCCccc-ccc---CCCCcCEEECCCCccCCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHH
Confidence 9998644 333 34899999999987666666678889999999999997754 778899999999999988877777
Q ss_pred cc-cCCCCCcEEEcCCC-CCcCCccCCCCCCCCEEEecCCCCCcchhhhhcCCCCCEEeccCCCCCCcCCCCC---CCcc
Q 043008 171 SI-CKFKSLVWLSLNND-LTAIPQEIGCLSSLECLNLGGNNFEGLPASIKQISRLECLDLSYCNSLQSLPELP---LHLE 245 (517)
Q Consensus 171 ~l-~~l~~L~~L~Ls~~-l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~l~---~~L~ 245 (517)
.+ ..+++|+.|++++| +..++. ...+++|++|+|++|+++.+|..+..+++|+.|+|++ +.++.+|... ++|+
T Consensus 163 ~~~~~l~~L~~L~L~~N~l~~~~~-~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~-N~l~~l~~~~~~l~~L~ 240 (317)
T 3o53_A 163 ELAASSDTLEHLNLQYNFIYDVKG-QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRN-NKLVLIEKALRFSQNLE 240 (317)
T ss_dssp GGGGGTTTCCEEECTTSCCCEEEC-CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTT-SCCCEECTTCCCCTTCC
T ss_pred HHhhccCcCCEEECCCCcCccccc-ccccccCCEEECCCCcCCcchhhhcccCcccEEECcC-CcccchhhHhhcCCCCC
Confidence 66 47899999999876 455543 4458999999999999999988899999999999998 5777888654 5677
Q ss_pred EEecccccCcCcCCCCCchhhhcchhhHHhhh
Q 043008 246 VLLATNCKRLQSLPEIPSCLEELDASVLEKLS 277 (517)
Q Consensus 246 ~L~~~~c~~l~~l~~~~~~L~~L~~l~~~~Ls 277 (517)
.|++.+++-.. ...+..+..++.+..+++.
T Consensus 241 ~L~l~~N~~~~--~~~~~~~~~~~~L~~l~l~ 270 (317)
T 3o53_A 241 HFDLRGNGFHC--GTLRDFFSKNQRVQTVAKQ 270 (317)
T ss_dssp EEECTTCCCBH--HHHHHHHHTCHHHHHHHHH
T ss_pred EEEccCCCccC--cCHHHHHhccccceEEECC
Confidence 77776643220 2334555666666555555
No 57
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.85 E-value=2.2e-21 Score=192.95 Aligned_cols=241 Identities=17% Similarity=0.191 Sum_probs=185.5
Q ss_pred cEEeccCCCCCccccccCCCCCCccEEEccCCCCCCCCCC--CCCCCCccEEeeccccCCc--ccCccccCCCCCCEEec
Q 043008 17 VELNLPYGHKVVQIWEGKKRAFKLKFINLSHSQCHIKIPD--PSETPNLERIDILNCTNPA--CVLSSITNFNHLSMLCF 92 (517)
Q Consensus 17 ~~L~L~~n~~l~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~--l~~l~~L~~L~L~~~~~l~--~~p~si~~l~~L~~L~L 92 (517)
+.++.+++ .++.+|.++. ++|++|+|++|.+ +.+|. +.++++|++|+|++|.... ..+..+..+++|++|++
T Consensus 10 ~~l~c~~~-~l~~ip~~~~--~~l~~L~L~~n~l-~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L 85 (306)
T 2z66_A 10 TEIRCNSK-GLTSVPTGIP--SSATRLELESNKL-QSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL 85 (306)
T ss_dssp TEEECCSS-CCSSCCSCCC--TTCCEEECCSSCC-CCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEEC
T ss_pred CEEEcCCC-CcccCCCCCC--CCCCEEECCCCcc-CccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEEC
Confidence 46888888 8888887654 6899999999985 46663 7899999999999986542 22566777889999999
Q ss_pred cCCcCccccCCCC-CCCCCcEEEEecCCCCCccCCCCCCCcEEEeecccCcccCC--cCCCCCCccEEEcccCcCCcccc
Q 043008 93 RHCKNLRHFPNNL-HFVCPIIIDFSYCVNLTEFPQISGNIIDLILTETAIEEVPS--STECLTNLQYLFLCSCKKLKRVS 169 (517)
Q Consensus 93 ~~~~~l~~lp~~~-~l~sL~~L~L~~c~~l~~~p~~~~~L~~L~L~~~~i~~lp~--~i~~l~~L~~L~l~~~~~l~~lp 169 (517)
++|... .+|..+ .+++|++|++++ |.+..++. .+..+++|+.|++++|...+..+
T Consensus 86 s~n~i~-~l~~~~~~l~~L~~L~l~~---------------------n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 143 (306)
T 2z66_A 86 SFNGVI-TMSSNFLGLEQLEHLDFQH---------------------SNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN 143 (306)
T ss_dssp CSCSEE-EEEEEEETCTTCCEEECTT---------------------SEEESSTTTTTTTTCTTCCEEECTTSCCEECST
T ss_pred CCCccc-cChhhcCCCCCCCEEECCC---------------------CcccccccchhhhhccCCCEEECCCCcCCccch
Confidence 888543 445444 555555555554 55555553 68889999999999998888888
Q ss_pred ccccCCCCCcEEEcCCCC-C--cCCccCCCCCCCCEEEecCCCCCcc-hhhhhcCCCCCEEeccCCCCCCcCCCC----C
Q 043008 170 TSICKFKSLVWLSLNNDL-T--AIPQEIGCLSSLECLNLGGNNFEGL-PASIKQISRLECLDLSYCNSLQSLPEL----P 241 (517)
Q Consensus 170 ~~l~~l~~L~~L~Ls~~l-~--~lp~~l~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~L~~c~~l~~lp~l----~ 241 (517)
..+..+++|+.|++++|. . .+|..+..+++|++|+|++|+++.+ |..+..+++|+.|+|++| .++.++.. .
T Consensus 144 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l 222 (306)
T 2z66_A 144 GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN-NFFSLDTFPYKCL 222 (306)
T ss_dssp TTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCSBCCSGGGTTC
T ss_pred hhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCC-ccCccChhhccCc
Confidence 889999999999998864 3 3788899999999999999999986 678999999999999984 56666542 3
Q ss_pred CCccEEecccccCcCcCCCCCchhhhcc-hhhHHhhhcCCCCCccee
Q 043008 242 LHLEVLLATNCKRLQSLPEIPSCLEELD-ASVLEKLSKHSFGEEYRI 287 (517)
Q Consensus 242 ~~L~~L~~~~c~~l~~l~~~~~~L~~L~-~l~~~~Ls~n~~~~~~~l 287 (517)
++|+.|++.++. .....+..+..++ .+..++|++|++.+.|.+
T Consensus 223 ~~L~~L~L~~N~---l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~ 266 (306)
T 2z66_A 223 NSLQVLDYSLNH---IMTSKKQELQHFPSSLAFLNLTQNDFACTCEH 266 (306)
T ss_dssp TTCCEEECTTSC---CCBCSSSSCCCCCTTCCEEECTTCCEECSGGG
T ss_pred ccCCEeECCCCC---CcccCHHHHHhhhccCCEEEccCCCeecccCh
Confidence 678888887753 3334455566663 778889999998877643
No 58
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.85 E-value=1.8e-20 Score=202.31 Aligned_cols=272 Identities=16% Similarity=0.150 Sum_probs=196.0
Q ss_pred CCCCCC-CCC-CCCCccEEeccCCCCCccccccCCCCCCccEEEccCCCCCC-CCC-CCCCCCCccEEeeccccCCcccC
Q 043008 3 PLRTLP-SNF-KPKNLVELNLPYGHKVVQIWEGKKRAFKLKFINLSHSQCHI-KIP-DPSETPNLERIDILNCTNPACVL 78 (517)
Q Consensus 3 pl~~lP-~~f-~~~~L~~L~L~~n~~l~~l~~~~~~l~~L~~L~Ls~~~~l~-~~p-~l~~l~~L~~L~L~~~~~l~~~p 78 (517)
.++.++ ..| ++++|++|+|++| .++.+|.. .+++|++|+|++|.+.. .+| .++++++|++|+|++|.....
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~-- 161 (562)
T 3a79_B 87 RIRSLDFHVFLFNQDLEYLDVSHN-RLQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL-- 161 (562)
T ss_dssp CCCEECTTTTTTCTTCCEEECTTS-CCCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT--
T ss_pred CCCcCCHHHhCCCCCCCEEECCCC-cCCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC--
Confidence 455563 446 7899999999999 88888877 78999999999998544 233 488889999999988865432
Q ss_pred ccccCCCCC--CEEeccCCcC--ccccCCCC-CC----------------------------------------------
Q 043008 79 SSITNFNHL--SMLCFRHCKN--LRHFPNNL-HF---------------------------------------------- 107 (517)
Q Consensus 79 ~si~~l~~L--~~L~L~~~~~--l~~lp~~~-~l---------------------------------------------- 107 (517)
.+..+++| +.|++++|.. ....|..+ .+
T Consensus 162 -~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~ 240 (562)
T 3a79_B 162 -DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMT 240 (562)
T ss_dssp -TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHH
T ss_pred -chhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHH
Confidence 33334444 6666666554 22222222 11
Q ss_pred -----------------------------------CCCcEEEEecCCCCCccC---------------------------
Q 043008 108 -----------------------------------VCPIIIDFSYCVNLTEFP--------------------------- 125 (517)
Q Consensus 108 -----------------------------------~sL~~L~L~~c~~l~~~p--------------------------- 125 (517)
.+|++|++++|.....+|
T Consensus 241 ~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p 320 (562)
T 3a79_B 241 FLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFS 320 (562)
T ss_dssp HHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSC
T ss_pred HHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecC
Confidence 144444444443222222
Q ss_pred -----------------------------CCCCCCcEEEeecccCcc-cCCcCCCCCCccEEEcccCcCCc--ccccccc
Q 043008 126 -----------------------------QISGNIIDLILTETAIEE-VPSSTECLTNLQYLFLCSCKKLK--RVSTSIC 173 (517)
Q Consensus 126 -----------------------------~~~~~L~~L~L~~~~i~~-lp~~i~~l~~L~~L~l~~~~~l~--~lp~~l~ 173 (517)
....+|+.|++++|.+.. +|..+..+++|+.|++++|.+.+ .+|..+.
T Consensus 321 ~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~ 400 (562)
T 3a79_B 321 KEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTK 400 (562)
T ss_dssp HHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTT
T ss_pred hhhhhhhhccCcceEEEccCCCcccccCccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhc
Confidence 344677999999999985 78889999999999999998765 5567899
Q ss_pred CCCCCcEEEcCCCC-Cc-CCcc-CCCCCCCCEEEecCCCCCc-chhhhhcCCCCCEEeccCCCCCCcCCCCC---CCccE
Q 043008 174 KFKSLVWLSLNNDL-TA-IPQE-IGCLSSLECLNLGGNNFEG-LPASIKQISRLECLDLSYCNSLQSLPELP---LHLEV 246 (517)
Q Consensus 174 ~l~~L~~L~Ls~~l-~~-lp~~-l~~l~~L~~L~Ls~n~l~~-lp~~l~~l~~L~~L~L~~c~~l~~lp~l~---~~L~~ 246 (517)
.+++|+.|++++|. .. +|.. +..+++|++|++++|+++. +|..+. ++|+.|+|++| .++.+|... ++|+.
T Consensus 401 ~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N-~l~~ip~~~~~l~~L~~ 477 (562)
T 3a79_B 401 NMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNN-RIMSIPKDVTHLQALQE 477 (562)
T ss_dssp TCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSS-CCCCCCTTTTSSCCCSE
T ss_pred CCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCC-cCcccChhhcCCCCCCE
Confidence 99999999998764 44 7764 7889999999999999974 554433 79999999985 788888643 57777
Q ss_pred EecccccCcCcCCCCCc-hhhhcchhhHHhhhcCCCCCccee
Q 043008 247 LLATNCKRLQSLPEIPS-CLEELDASVLEKLSKHSFGEEYRI 287 (517)
Q Consensus 247 L~~~~c~~l~~l~~~~~-~L~~L~~l~~~~Ls~n~~~~~~~l 287 (517)
|++.++ .++ ..|. .+..++.+..++|++|++.|.|++
T Consensus 478 L~L~~N-~l~---~l~~~~~~~l~~L~~L~l~~N~~~c~c~~ 515 (562)
T 3a79_B 478 LNVASN-QLK---SVPDGVFDRLTSLQYIWLHDNPWDCTCPG 515 (562)
T ss_dssp EECCSS-CCC---CCCTTSTTTCTTCCCEECCSCCBCCCHHH
T ss_pred EECCCC-CCC---CCCHHHHhcCCCCCEEEecCCCcCCCcch
Confidence 777664 233 3344 488888999999999999987743
No 59
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.85 E-value=2.5e-21 Score=205.40 Aligned_cols=240 Identities=12% Similarity=0.038 Sum_probs=177.7
Q ss_pred CCCCccEEEccCCCCCCCCC-CCCCCCCccEEeeccccCCcccCccccCCCCCCEEeccCCcCccccCCCCCCCCCcEEE
Q 043008 36 RAFKLKFINLSHSQCHIKIP-DPSETPNLERIDILNCTNPACVLSSITNFNHLSMLCFRHCKNLRHFPNNLHFVCPIIID 114 (517)
Q Consensus 36 ~l~~L~~L~Ls~~~~l~~~p-~l~~l~~L~~L~L~~~~~l~~~p~si~~l~~L~~L~L~~~~~l~~lp~~~~l~sL~~L~ 114 (517)
.+++|+.|+|++|.+....| .|..+++|++|+|++|......| ++.+++|++|+|++|... .+| ..++|+.|+
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~-~l~---~~~~L~~L~ 105 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQ-ELL---VGPSIETLH 105 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEE-EEE---ECTTCCEEE
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCC-CCC---CCCCcCEEE
Confidence 34478888888887655444 47888888888888886544443 888888888888888543 333 237888888
Q ss_pred EecCCCCCccCCCCCCCcEEEeecccCccc-CCcCCCCCCccEEEcccCcCCcccccccc-CCCCCcEEEcCCCC-CcCC
Q 043008 115 FSYCVNLTEFPQISGNIIDLILTETAIEEV-PSSTECLTNLQYLFLCSCKKLKRVSTSIC-KFKSLVWLSLNNDL-TAIP 191 (517)
Q Consensus 115 L~~c~~l~~~p~~~~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~l~~~~~l~~lp~~l~-~l~~L~~L~Ls~~l-~~lp 191 (517)
+++|......+..+.+|+.|++++|.+..+ |..+..+++|+.|++++|.+.+..|..+. .+++|+.|++++|. ..+|
T Consensus 106 L~~N~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~ 185 (487)
T 3oja_A 106 AANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVK 185 (487)
T ss_dssp CCSSCCCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEE
T ss_pred CcCCcCCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccccc
Confidence 888776666666678889999999998866 55788899999999999988887887776 78999999997764 4554
Q ss_pred ccCCCCCCCCEEEecCCCCCcchhhhhcCCCCCEEeccCCCCCCcCCCCC---CCccEEecccccCcCcCCCCCchhhhc
Q 043008 192 QEIGCLSSLECLNLGGNNFEGLPASIKQISRLECLDLSYCNSLQSLPELP---LHLEVLLATNCKRLQSLPEIPSCLEEL 268 (517)
Q Consensus 192 ~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~l~---~~L~~L~~~~c~~l~~l~~~~~~L~~L 268 (517)
. ...+++|+.|+|++|.++.+|..+..+++|+.|+|++ +.+..+|... ++|+.|++.++.-.. ...|..+..+
T Consensus 186 ~-~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~-N~l~~lp~~l~~l~~L~~L~l~~N~l~c--~~~~~~~~~l 261 (487)
T 3oja_A 186 G-QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRN-NKLVLIEKALRFSQNLEHFDLRGNGFHC--GTLRDFFSKN 261 (487)
T ss_dssp C-CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTT-SCCCEECTTCCCCTTCCEEECTTCCBCH--HHHHHHHTTC
T ss_pred c-cccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecC-CcCcccchhhccCCCCCEEEcCCCCCcC--cchHHHHHhC
Confidence 3 4468999999999999999888899999999999997 5677777654 567777776643220 1334556666
Q ss_pred chhhHHhhh-------cCCCCCcc
Q 043008 269 DASVLEKLS-------KHSFGEEY 285 (517)
Q Consensus 269 ~~l~~~~Ls-------~n~~~~~~ 285 (517)
+.+..++++ .+++.+.+
T Consensus 262 ~~L~~l~~~~~~~~~~~~~~~c~~ 285 (487)
T 3oja_A 262 QRVQTVAKQTVKKLTGQNEEECTV 285 (487)
T ss_dssp HHHHHHHHHHHHHHTSSSSCCCSS
T ss_pred CCCcEEeccccccccCCCcccccC
Confidence 666666665 56655444
No 60
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.85 E-value=6.7e-21 Score=193.50 Aligned_cols=266 Identities=12% Similarity=0.081 Sum_probs=205.3
Q ss_pred CCCCCccEEeccCCCCCccccccCCCCCCccEEEccCCCCCCCCC-CCCCCCCccEEeeccccCCcccCccccCCCCCCE
Q 043008 11 FKPKNLVELNLPYGHKVVQIWEGKKRAFKLKFINLSHSQCHIKIP-DPSETPNLERIDILNCTNPACVLSSITNFNHLSM 89 (517)
Q Consensus 11 f~~~~L~~L~L~~n~~l~~l~~~~~~l~~L~~L~Ls~~~~l~~~p-~l~~l~~L~~L~L~~~~~l~~~p~si~~l~~L~~ 89 (517)
..++.....+++++ .++.+|.++. ++|++|+|++|.+....+ .+.++++|++|+|++|......+..++++++|++
T Consensus 28 ~~C~~~~~c~~~~~-~l~~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 104 (353)
T 2z80_A 28 LSCDRNGICKGSSG-SLNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEH 104 (353)
T ss_dssp CEECTTSEEECCST-TCSSCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred CCCCCCeEeeCCCC-Cccccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCE
Confidence 34556667899999 9999998765 599999999998554444 4899999999999999766666778999999999
Q ss_pred EeccCCcCccccCCC-C-CCCCCcEEEEecCCCCCccCC--C---CCCCcEEEeecc-cCccc-CCcCCCCCCccEEEcc
Q 043008 90 LCFRHCKNLRHFPNN-L-HFVCPIIIDFSYCVNLTEFPQ--I---SGNIIDLILTET-AIEEV-PSSTECLTNLQYLFLC 160 (517)
Q Consensus 90 L~L~~~~~l~~lp~~-~-~l~sL~~L~L~~c~~l~~~p~--~---~~~L~~L~L~~~-~i~~l-p~~i~~l~~L~~L~l~ 160 (517)
|++++|... .+|.. + ++++|++|++++|. ++.+|. . +.+|+.|++++| .+..+ +..+..+++|+.|+++
T Consensus 105 L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~ 182 (353)
T 2z80_A 105 LDLSYNYLS-NLSSSWFKPLSSLTFLNLLGNP-YKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEID 182 (353)
T ss_dssp EECCSSCCS-SCCHHHHTTCTTCSEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEE
T ss_pred EECCCCcCC-cCCHhHhCCCccCCEEECCCCC-CcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECC
Confidence 999998665 55554 5 89999999999964 556665 3 456799999998 57766 4578899999999999
Q ss_pred cCcCCccccccccCCCCCcEEEcCCC-CCcCCcc-CCCCCCCCEEEecCCCCCcchh----hhhcCCCCCEEeccCCCCC
Q 043008 161 SCKKLKRVSTSICKFKSLVWLSLNND-LTAIPQE-IGCLSSLECLNLGGNNFEGLPA----SIKQISRLECLDLSYCNSL 234 (517)
Q Consensus 161 ~~~~l~~lp~~l~~l~~L~~L~Ls~~-l~~lp~~-l~~l~~L~~L~Ls~n~l~~lp~----~l~~l~~L~~L~L~~c~~l 234 (517)
+|.+.+..|..+..+++|++|++++| +..+|.. +..+++|+.|++++|+++.++. .......++.++++++..-
T Consensus 183 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~ 262 (353)
T 2z80_A 183 ASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKIT 262 (353)
T ss_dssp ETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCC
T ss_pred CCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhcccccccccc
Confidence 99888888999999999999999765 4566654 3458999999999999987541 2345678888998875422
Q ss_pred C----cCCC---CCCCccEEecccccCcCcCCCCCch-hhhcchhhHHhhhcCCCCCcc
Q 043008 235 Q----SLPE---LPLHLEVLLATNCKRLQSLPEIPSC-LEELDASVLEKLSKHSFGEEY 285 (517)
Q Consensus 235 ~----~lp~---l~~~L~~L~~~~c~~l~~l~~~~~~-L~~L~~l~~~~Ls~n~~~~~~ 285 (517)
. .+|+ -.++|+.|++.++. ++ ..|.. +..++.+..++|++|++.+.|
T Consensus 263 ~~~l~~l~~~l~~l~~L~~L~Ls~N~-l~---~i~~~~~~~l~~L~~L~L~~N~~~~~~ 317 (353)
T 2z80_A 263 DESLFQVMKLLNQISGLLELEFSRNQ-LK---SVPDGIFDRLTSLQKIWLHTNPWDCSC 317 (353)
T ss_dssp HHHHHHHHHHHHTCTTCCEEECCSSC-CC---CCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred CcchhhhHHHHhcccCCCEEECCCCC-CC---ccCHHHHhcCCCCCEEEeeCCCccCcC
Confidence 1 2443 23688888887752 33 33444 578888999999999988665
No 61
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.84 E-value=3.8e-20 Score=181.24 Aligned_cols=207 Identities=17% Similarity=0.162 Sum_probs=130.2
Q ss_pred CCCCCCCCCCCCccEEeccCCCCCccccc-cCCCCCCccEEEccCCCCCCCCC-CCCCCCCccEEeeccccCCcccCccc
Q 043008 4 LRTLPSNFKPKNLVELNLPYGHKVVQIWE-GKKRAFKLKFINLSHSQCHIKIP-DPSETPNLERIDILNCTNPACVLSSI 81 (517)
Q Consensus 4 l~~lP~~f~~~~L~~L~L~~n~~l~~l~~-~~~~l~~L~~L~Ls~~~~l~~~p-~l~~l~~L~~L~L~~~~~l~~~p~si 81 (517)
+.++|..+ +++|++|++++| .+..++. .+..+++|++|+|++|.+....+ .+.++++|++|+|++|......+..+
T Consensus 19 l~~ip~~l-~~~l~~L~ls~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 96 (276)
T 2z62_A 19 FYKIPDNL-PFSTKNLDLSFN-PLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAF 96 (276)
T ss_dssp CSSCCSSS-CTTCCEEECTTC-CCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTT
T ss_pred ccccCCCC-CCCccEEECCCC-cccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhh
Confidence 34455544 345666666666 5555533 55556666666666665333222 25556666666666654444444555
Q ss_pred cCCCCCCEEeccCCcCccccCCCC-CCCCCcEEEEecCCCCCccCCCCCCCcEEEeecccCcc--cCCcCCCCCCccEEE
Q 043008 82 TNFNHLSMLCFRHCKNLRHFPNNL-HFVCPIIIDFSYCVNLTEFPQISGNIIDLILTETAIEE--VPSSTECLTNLQYLF 158 (517)
Q Consensus 82 ~~l~~L~~L~L~~~~~l~~lp~~~-~l~sL~~L~L~~c~~l~~~p~~~~~L~~L~L~~~~i~~--lp~~i~~l~~L~~L~ 158 (517)
..+++|++|++++|......+..+ .+++| +.|++++|.+.. +|..+..+++|+.|+
T Consensus 97 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L---------------------~~L~l~~n~l~~~~l~~~~~~l~~L~~L~ 155 (276)
T 2z62_A 97 SGLSSLQKLVAVETNLASLENFPIGHLKTL---------------------KELNVAHNLIQSFKLPEYFSNLTNLEHLD 155 (276)
T ss_dssp TTCTTCCEEECTTSCCCCSTTCCCTTCTTC---------------------CEEECCSSCCCCCCCCGGGGGCTTCCEEE
T ss_pred cCCccccEEECCCCCccccCchhcccCCCC---------------------CEEECcCCccceecCchhhccCCCCCEEE
Confidence 556666666665554433222223 44444 555555555554 567788888888888
Q ss_pred cccCcCCccccccccCCCCCc----EEEcCCC-CCcCCccCCCCCCCCEEEecCCCCCcchhh-hhcCCCCCEEeccCCC
Q 043008 159 LCSCKKLKRVSTSICKFKSLV----WLSLNND-LTAIPQEIGCLSSLECLNLGGNNFEGLPAS-IKQISRLECLDLSYCN 232 (517)
Q Consensus 159 l~~~~~l~~lp~~l~~l~~L~----~L~Ls~~-l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~-l~~l~~L~~L~L~~c~ 232 (517)
+++|.+.+..+..+..+++|+ .|++++| +..++.......+|+.|+|++|+++.+|.. +..+++|+.|+|++|+
T Consensus 156 Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 156 LSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp CCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSC
T ss_pred CCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCc
Confidence 888877766666666666665 7888664 566666665666899999999999988754 5789999999999854
Q ss_pred C
Q 043008 233 S 233 (517)
Q Consensus 233 ~ 233 (517)
.
T Consensus 236 ~ 236 (276)
T 2z62_A 236 W 236 (276)
T ss_dssp B
T ss_pred c
Confidence 3
No 62
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.84 E-value=5.4e-20 Score=186.73 Aligned_cols=223 Identities=20% Similarity=0.185 Sum_probs=152.3
Q ss_pred CCCCCCCCCCCCCccEEeccCCCCCccccc-cCCCCCCccEEEccCCCCCCCCCC--CCCCCCccEEe-eccccCCcccC
Q 043008 3 PLRTLPSNFKPKNLVELNLPYGHKVVQIWE-GKKRAFKLKFINLSHSQCHIKIPD--PSETPNLERID-ILNCTNPACVL 78 (517)
Q Consensus 3 pl~~lP~~f~~~~L~~L~L~~n~~l~~l~~-~~~~l~~L~~L~Ls~~~~l~~~p~--l~~l~~L~~L~-L~~~~~l~~~p 78 (517)
-++++|+.+ ++++++|+|++| +|+.+|. .|.++++|++|+|++|.+.+.+|. |.++++|+++. +.+|......|
T Consensus 20 ~Lt~iP~~l-~~~l~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~ 97 (350)
T 4ay9_X 20 KVTEIPSDL-PRNAIELRFVLT-KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINP 97 (350)
T ss_dssp TCCSCCTTC-CTTCSEEEEESC-CCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECT
T ss_pred CCCccCcCc-CCCCCEEEccCC-cCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCc
Confidence 367788776 678888888888 8888865 578888888888888887776663 67788877644 44444433445
Q ss_pred ccccCCCCCCEEeccCCcCccccCCCC-CCCCCcEEEEecCCCCCccCCC-C----CCCcEEEeecccCcccCCcCCCCC
Q 043008 79 SSITNFNHLSMLCFRHCKNLRHFPNNL-HFVCPIIIDFSYCVNLTEFPQI-S----GNIIDLILTETAIEEVPSSTECLT 152 (517)
Q Consensus 79 ~si~~l~~L~~L~L~~~~~l~~lp~~~-~l~sL~~L~L~~c~~l~~~p~~-~----~~L~~L~L~~~~i~~lp~~i~~l~ 152 (517)
..+..+++|++|++++|......+..+ ...++..|++.++..+..+|.. + ..++.|++++|+|+.+|..+....
T Consensus 98 ~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~ 177 (350)
T 4ay9_X 98 EAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGT 177 (350)
T ss_dssp TSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTE
T ss_pred hhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhcccc
Confidence 677888888888888876544433333 6667778888887777766642 1 234667777777777777666666
Q ss_pred CccEEEcccCcCCccccccccCCCCCcEEEcCCCCCcCCccCCCCCCCCEEEecCCCCCcchhhhhcCCCCCEEeccCCC
Q 043008 153 NLQYLFLCSCKKLKRVSTSICKFKSLVWLSLNNDLTAIPQEIGCLSSLECLNLGGNNFEGLPASIKQISRLECLDLSYCN 232 (517)
Q Consensus 153 ~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~Ls~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~c~ 232 (517)
+|+.|++.++..++.+|. ..+..+++|++|+|++|+|+.+|.. .+.+|+.|.+.+|+
T Consensus 178 ~L~~l~l~~~n~l~~i~~---------------------~~f~~l~~L~~LdLs~N~l~~lp~~--~~~~L~~L~~l~~~ 234 (350)
T 4ay9_X 178 QLDELNLSDNNNLEELPN---------------------DVFHGASGPVILDISRTRIHSLPSY--GLENLKKLRARSTY 234 (350)
T ss_dssp EEEEEECTTCTTCCCCCT---------------------TTTTTEECCSEEECTTSCCCCCCSS--SCTTCCEEECTTCT
T ss_pred chhHHhhccCCcccCCCH---------------------HHhccCcccchhhcCCCCcCccChh--hhccchHhhhccCC
Confidence 777777765544444432 1356677778888888888888753 36677777777777
Q ss_pred CCCcCCCC--CCCccEEecc
Q 043008 233 SLQSLPEL--PLHLEVLLAT 250 (517)
Q Consensus 233 ~l~~lp~l--~~~L~~L~~~ 250 (517)
.++.+|.+ .++|+.+++.
T Consensus 235 ~l~~lP~l~~l~~L~~l~l~ 254 (350)
T 4ay9_X 235 NLKKLPTLEKLVALMEASLT 254 (350)
T ss_dssp TCCCCCCTTTCCSCCEEECS
T ss_pred CcCcCCCchhCcChhhCcCC
Confidence 77777753 2455555543
No 63
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.84 E-value=2.4e-21 Score=193.53 Aligned_cols=191 Identities=18% Similarity=0.175 Sum_probs=79.8
Q ss_pred CCCCccEEEccCCCCCCCCCC-C--CCCCCccEEeeccccCCcccCccccCC-----CCCCEEeccCCcCccccCCCC-C
Q 043008 36 RAFKLKFINLSHSQCHIKIPD-P--SETPNLERIDILNCTNPACVLSSITNF-----NHLSMLCFRHCKNLRHFPNNL-H 106 (517)
Q Consensus 36 ~l~~L~~L~Ls~~~~l~~~p~-l--~~l~~L~~L~L~~~~~l~~~p~si~~l-----~~L~~L~L~~~~~l~~lp~~~-~ 106 (517)
.+++|++|+|++|.+...+|. + ..+++|++|+|++|..... |..++.+ ++|++|++++|......|..+ +
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~ 171 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRV 171 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhcc
Confidence 344555555555544434442 2 4455555555555433222 4444433 455555555544433333444 4
Q ss_pred CCCCcEEEEecCCCCCc--cC-----CCCCCCcEEEeecccCcccC---Cc-CCCCCCccEEEcccCcCCcccc-ccccC
Q 043008 107 FVCPIIIDFSYCVNLTE--FP-----QISGNIIDLILTETAIEEVP---SS-TECLTNLQYLFLCSCKKLKRVS-TSICK 174 (517)
Q Consensus 107 l~sL~~L~L~~c~~l~~--~p-----~~~~~L~~L~L~~~~i~~lp---~~-i~~l~~L~~L~l~~~~~l~~lp-~~l~~ 174 (517)
+++|++|++++|..... +| ..+.+|++|++++|.++.++ .. +..+++|+.|++++|.+.+..| ..+..
T Consensus 172 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 251 (312)
T 1wwl_A 172 FPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDW 251 (312)
T ss_dssp CSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCC
T ss_pred CCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhh
Confidence 45555555554433221 01 22233444444444444221 11 1233444444444444433332 22333
Q ss_pred CCCCcEEEcCCC-CCcCCccCCCCCCCCEEEecCCCCCcchhhhhcCCCCCEEeccC
Q 043008 175 FKSLVWLSLNND-LTAIPQEIGCLSSLECLNLGGNNFEGLPASIKQISRLECLDLSY 230 (517)
Q Consensus 175 l~~L~~L~Ls~~-l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~ 230 (517)
+++|+.|++++| +..+|..+. ++|++|+|++|+|+.+|. +..+++|+.|+|++
T Consensus 252 l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~l~~~p~-~~~l~~L~~L~L~~ 305 (312)
T 1wwl_A 252 PSQLNSLNLSFTGLKQVPKGLP--AKLSVLDLSYNRLDRNPS-PDELPQVGNLSLKG 305 (312)
T ss_dssp CTTCCEEECTTSCCSSCCSSCC--SEEEEEECCSSCCCSCCC-TTTSCEEEEEECTT
T ss_pred cCCCCEEECCCCccChhhhhcc--CCceEEECCCCCCCCChh-HhhCCCCCEEeccC
Confidence 444444444332 233443333 444444444444444433 44444444444443
No 64
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.83 E-value=2.3e-19 Score=194.96 Aligned_cols=234 Identities=20% Similarity=0.191 Sum_probs=193.1
Q ss_pred CCccEEeccCCCCCccccccCCCCCCccEEEccCCCCCCCCCCCCCCCCccEEeeccccCCcccCccccCCCCCCEEecc
Q 043008 14 KNLVELNLPYGHKVVQIWEGKKRAFKLKFINLSHSQCHIKIPDPSETPNLERIDILNCTNPACVLSSITNFNHLSMLCFR 93 (517)
Q Consensus 14 ~~L~~L~L~~n~~l~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~~~~l~~~p~si~~l~~L~~L~L~ 93 (517)
.+++.|++++| .++.+|..+. ++|+.|+|++|. ++.+|. .+++|++|+|++|. +..+|. .+++|++|+++
T Consensus 40 ~~l~~L~ls~n-~L~~lp~~l~--~~L~~L~L~~N~-l~~lp~--~l~~L~~L~Ls~N~-l~~lp~---~l~~L~~L~Ls 109 (622)
T 3g06_A 40 NGNAVLNVGES-GLTTLPDCLP--AHITTLVIPDNN-LTSLPA--LPPELRTLEVSGNQ-LTSLPV---LPPGLLELSIF 109 (622)
T ss_dssp HCCCEEECCSS-CCSCCCSCCC--TTCSEEEECSCC-CSCCCC--CCTTCCEEEECSCC-CSCCCC---CCTTCCEEEEC
T ss_pred CCCcEEEecCC-CcCccChhhC--CCCcEEEecCCC-CCCCCC--cCCCCCEEEcCCCc-CCcCCC---CCCCCCEEECc
Confidence 46899999999 9999998776 899999999998 557777 67999999999985 556776 78999999999
Q ss_pred CCcCccccCCCCCCCCCcEEEEecCCCCCccCCCCCCCcEEEeecccCcccCCcCCCCCCccEEEcccCcCCcccccccc
Q 043008 94 HCKNLRHFPNNLHFVCPIIIDFSYCVNLTEFPQISGNIIDLILTETAIEEVPSSTECLTNLQYLFLCSCKKLKRVSTSIC 173 (517)
Q Consensus 94 ~~~~l~~lp~~~~l~sL~~L~L~~c~~l~~~p~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~l~ 173 (517)
+|.. ..+|. .+++|+.|++++|. +..+|..+.+|+.|++++|.+..+|.. +.+|+.|++++|.+.. +| .
T Consensus 110 ~N~l-~~l~~--~l~~L~~L~L~~N~-l~~lp~~l~~L~~L~Ls~N~l~~l~~~---~~~L~~L~L~~N~l~~-l~---~ 178 (622)
T 3g06_A 110 SNPL-THLPA--LPSGLCKLWIFGNQ-LTSLPVLPPGLQELSVSDNQLASLPAL---PSELCKLWAYNNQLTS-LP---M 178 (622)
T ss_dssp SCCC-CCCCC--CCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSC-CC---C
T ss_pred CCcC-CCCCC--CCCCcCEEECCCCC-CCcCCCCCCCCCEEECcCCcCCCcCCc---cCCCCEEECCCCCCCC-Cc---c
Confidence 9854 45665 68899999999964 777998889999999999999998863 5789999999996654 55 5
Q ss_pred CCCCCcEEEcCCC-CCcCCccCCCCCCCCEEEecCCCCCcchhhhhcCCCCCEEeccCCCCCCcCCCCCCCccEEecccc
Q 043008 174 KFKSLVWLSLNND-LTAIPQEIGCLSSLECLNLGGNNFEGLPASIKQISRLECLDLSYCNSLQSLPELPLHLEVLLATNC 252 (517)
Q Consensus 174 ~l~~L~~L~Ls~~-l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~l~~~L~~L~~~~c 252 (517)
.+++|+.|++++| +..+|.. +++|+.|++++|.++.+|.. +++|+.|+|++ +.++.+|..+++|+.|++.++
T Consensus 179 ~~~~L~~L~Ls~N~l~~l~~~---~~~L~~L~L~~N~l~~l~~~---~~~L~~L~Ls~-N~L~~lp~~l~~L~~L~Ls~N 251 (622)
T 3g06_A 179 LPSGLQELSVSDNQLASLPTL---PSELYKLWAYNNRLTSLPAL---PSGLKELIVSG-NRLTSLPVLPSELKELMVSGN 251 (622)
T ss_dssp CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSSCCCC---CTTCCEEECCS-SCCSCCCCCCTTCCEEECCSS
T ss_pred cCCCCcEEECCCCCCCCCCCc---cchhhEEECcCCcccccCCC---CCCCCEEEccC-CccCcCCCCCCcCcEEECCCC
Confidence 6789999999775 5667753 58999999999999999853 58999999997 578889988899999999886
Q ss_pred cCcCcCCCCCchhhhcchhhHHhhhcCCCC
Q 043008 253 KRLQSLPEIPSCLEELDASVLEKLSKHSFG 282 (517)
Q Consensus 253 ~~l~~l~~~~~~L~~L~~l~~~~Ls~n~~~ 282 (517)
.+..++. .++.+..++|++|.++
T Consensus 252 -~L~~lp~------~~~~L~~L~Ls~N~L~ 274 (622)
T 3g06_A 252 -RLTSLPM------LPSGLLSLSVYRNQLT 274 (622)
T ss_dssp -CCSCCCC------CCTTCCEEECCSSCCC
T ss_pred -CCCcCCc------ccccCcEEeCCCCCCC
Confidence 4555544 2344555678888776
No 65
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.83 E-value=1e-19 Score=174.38 Aligned_cols=190 Identities=19% Similarity=0.161 Sum_probs=97.0
Q ss_pred CccEEEccCCCCCCCCC-CCCCCCCccEEeeccccCCcccC-ccccCCCCCCEEeccCCcCccccCC-CC-CCCCCcEEE
Q 043008 39 KLKFINLSHSQCHIKIP-DPSETPNLERIDILNCTNPACVL-SSITNFNHLSMLCFRHCKNLRHFPN-NL-HFVCPIIID 114 (517)
Q Consensus 39 ~L~~L~Ls~~~~l~~~p-~l~~l~~L~~L~L~~~~~l~~~p-~si~~l~~L~~L~L~~~~~l~~lp~-~~-~l~sL~~L~ 114 (517)
+|++|+|++|.+....+ .+.++++|++|++++|..+..++ ..+.++++|++|++++|..++.+|. .+ ++++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 45555555554322222 24555555555555553233332 2455555555555555222333332 23 555555555
Q ss_pred EecCCCCCccCC--CCCCCc---EEEeecc-cCcccCCc-CCCCCCcc-EEEcccCcCCccccccccCCCCCcEEEcCCC
Q 043008 115 FSYCVNLTEFPQ--ISGNII---DLILTET-AIEEVPSS-TECLTNLQ-YLFLCSCKKLKRVSTSICKFKSLVWLSLNND 186 (517)
Q Consensus 115 L~~c~~l~~~p~--~~~~L~---~L~L~~~-~i~~lp~~-i~~l~~L~-~L~l~~~~~l~~lp~~l~~l~~L~~L~Ls~~ 186 (517)
+++|. ++.+|. .+.+|+ .|++++| .++.+|.. +..+++|+ .|++++|.+. .+|......++|+.|++++|
T Consensus 112 l~~n~-l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~n 189 (239)
T 2xwt_C 112 IFNTG-LKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKN 189 (239)
T ss_dssp EEEEC-CCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEEEEEECTTC
T ss_pred CCCCC-CccccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcCCC
Confidence 55543 223442 112223 5555555 55555543 56666666 7777666544 44433323355666666554
Q ss_pred --CCcCCc-cCCCC-CCCCEEEecCCCCCcchhhhhcCCCCCEEeccCCC
Q 043008 187 --LTAIPQ-EIGCL-SSLECLNLGGNNFEGLPASIKQISRLECLDLSYCN 232 (517)
Q Consensus 187 --l~~lp~-~l~~l-~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~c~ 232 (517)
+..+|. .+..+ ++|+.|++++|+++.+|.. .+++|+.|++.++.
T Consensus 190 ~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 190 KYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK--GLEHLKELIARNTW 237 (239)
T ss_dssp TTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT--TCTTCSEEECTTC-
T ss_pred CCcccCCHHHhhccccCCcEEECCCCccccCChh--HhccCceeeccCcc
Confidence 445533 35666 6777777777777776654 56677777776643
No 66
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.82 E-value=7.4e-21 Score=190.38 Aligned_cols=219 Identities=18% Similarity=0.061 Sum_probs=177.1
Q ss_pred CCCCccEEeccCCCCCcccc-ccCCCCCCccEEEccCCCCCCCCCCCCCCCCccEEeeccccCCcccCccccCCCCCCEE
Q 043008 12 KPKNLVELNLPYGHKVVQIW-EGKKRAFKLKFINLSHSQCHIKIPDPSETPNLERIDILNCTNPACVLSSITNFNHLSML 90 (517)
Q Consensus 12 ~~~~L~~L~L~~n~~l~~l~-~~~~~l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~~~~l~~~p~si~~l~~L~~L 90 (517)
.+++|++|+|++| .+..++ ..+..+++|++|+|++|.+.. .+++..+++|++|+|++|.. ..++ ..++|++|
T Consensus 32 ~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~l~~L~~L~Ls~n~l-~~l~----~~~~L~~L 104 (317)
T 3o53_A 32 SAWNVKELDLSGN-PLSQISAADLAPFTKLELLNLSSNVLYE-TLDLESLSTLRTLDLNNNYV-QELL----VGPSIETL 104 (317)
T ss_dssp TGGGCSEEECTTS-CCCCCCHHHHTTCTTCCEEECTTSCCEE-EEEETTCTTCCEEECCSSEE-EEEE----ECTTCCEE
T ss_pred cCCCCCEEECcCC-ccCcCCHHHhhCCCcCCEEECCCCcCCc-chhhhhcCCCCEEECcCCcc-cccc----CCCCcCEE
Confidence 4678999999999 998874 688999999999999998544 44589999999999999854 3333 44899999
Q ss_pred eccCCcCccccCCCCCCCCCcEEEEecCCCCCccCCC---CCCCcEEEeecccCcccC-CcC-CCCCCccEEEcccCcCC
Q 043008 91 CFRHCKNLRHFPNNLHFVCPIIIDFSYCVNLTEFPQI---SGNIIDLILTETAIEEVP-SST-ECLTNLQYLFLCSCKKL 165 (517)
Q Consensus 91 ~L~~~~~l~~lp~~~~l~sL~~L~L~~c~~l~~~p~~---~~~L~~L~L~~~~i~~lp-~~i-~~l~~L~~L~l~~~~~l 165 (517)
++++|......+. .+++|+.|++++|......+.. +.+|+.|++++|.+..++ ..+ ..+++|++|++++|.+.
T Consensus 105 ~l~~n~l~~~~~~--~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~ 182 (317)
T 3o53_A 105 HAANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182 (317)
T ss_dssp ECCSSCCSEEEEC--CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred ECCCCccCCcCcc--ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCc
Confidence 9999976654443 4788999999997765544444 356799999999999764 444 47899999999999765
Q ss_pred ccccccccCCCCCcEEEcCCC-CCcCCccCCCCCCCCEEEecCCCCCcchhhhhcCCCCCEEeccCCCCC-CcCCCCC
Q 043008 166 KRVSTSICKFKSLVWLSLNND-LTAIPQEIGCLSSLECLNLGGNNFEGLPASIKQISRLECLDLSYCNSL-QSLPELP 241 (517)
Q Consensus 166 ~~lp~~l~~l~~L~~L~Ls~~-l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~c~~l-~~lp~l~ 241 (517)
.. +. ...+++|+.|++++| +..+|..+..+++|+.|+|++|+++.+|..+..+++|+.|++++|+.. ..+|.+.
T Consensus 183 ~~-~~-~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~ 258 (317)
T 3o53_A 183 DV-KG-QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFF 258 (317)
T ss_dssp EE-EC-CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCBHHHHHHHH
T ss_pred cc-cc-ccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCccCcCHHHHH
Confidence 54 33 345999999999875 678888899999999999999999999999999999999999986654 3444443
No 67
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.81 E-value=1.7e-20 Score=199.00 Aligned_cols=220 Identities=17% Similarity=0.054 Sum_probs=179.5
Q ss_pred CCCCccEEeccCCCCCccc-cccCCCCCCccEEEccCCCCCCCCCCCCCCCCccEEeeccccCCcccCccccCCCCCCEE
Q 043008 12 KPKNLVELNLPYGHKVVQI-WEGKKRAFKLKFINLSHSQCHIKIPDPSETPNLERIDILNCTNPACVLSSITNFNHLSML 90 (517)
Q Consensus 12 ~~~~L~~L~L~~n~~l~~l-~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~~~~l~~~p~si~~l~~L~~L 90 (517)
.+++|++|+|++| .+..+ |..+..+++|++|+|++|.+.... ++..+++|++|+|++|.. ..+| ..++|++|
T Consensus 32 ~~~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~l~~l~~L~~L~Ls~N~l-~~l~----~~~~L~~L 104 (487)
T 3oja_A 32 SAWNVKELDLSGN-PLSQISAADLAPFTKLELLNLSSNVLYETL-DLESLSTLRTLDLNNNYV-QELL----VGPSIETL 104 (487)
T ss_dssp TGGGCCEEECCSS-CCCCCCGGGGTTCTTCCEEECTTSCCEEEE-ECTTCTTCCEEECCSSEE-EEEE----ECTTCCEE
T ss_pred cCCCccEEEeeCC-cCCCCCHHHHhCCCCCCEEEeeCCCCCCCc-ccccCCCCCEEEecCCcC-CCCC----CCCCcCEE
Confidence 3458999999999 89887 578999999999999999855444 499999999999999854 3333 34899999
Q ss_pred eccCCcCccccCCCCCCCCCcEEEEecCCCCCccCCCC---CCCcEEEeecccCcc-cCCcCC-CCCCccEEEcccCcCC
Q 043008 91 CFRHCKNLRHFPNNLHFVCPIIIDFSYCVNLTEFPQIS---GNIIDLILTETAIEE-VPSSTE-CLTNLQYLFLCSCKKL 165 (517)
Q Consensus 91 ~L~~~~~l~~lp~~~~l~sL~~L~L~~c~~l~~~p~~~---~~L~~L~L~~~~i~~-lp~~i~-~l~~L~~L~l~~~~~l 165 (517)
++++|......+. .+++|+.|++++|......|..+ .+|+.|+|++|.+.. .|..+. .+++|+.|++++|.+.
T Consensus 105 ~L~~N~l~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~ 182 (487)
T 3oja_A 105 HAANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182 (487)
T ss_dssp ECCSSCCCCEEEC--CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred ECcCCcCCCCCcc--ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccc
Confidence 9999977655443 46899999999987666656544 567999999999995 566665 7999999999999876
Q ss_pred ccccccccCCCCCcEEEcCCC-CCcCCccCCCCCCCCEEEecCCCCCcchhhhhcCCCCCEEeccCCCCC-CcCCCCCC
Q 043008 166 KRVSTSICKFKSLVWLSLNND-LTAIPQEIGCLSSLECLNLGGNNFEGLPASIKQISRLECLDLSYCNSL-QSLPELPL 242 (517)
Q Consensus 166 ~~lp~~l~~l~~L~~L~Ls~~-l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~c~~l-~~lp~l~~ 242 (517)
+. |. ...+++|+.|++++| +..+|..+..+++|+.|+|++|.++.+|..+..+++|+.|++++|+.. ..+|.+..
T Consensus 183 ~~-~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~ 259 (487)
T 3oja_A 183 DV-KG-QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFS 259 (487)
T ss_dssp EE-EC-CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBCHHHHHHHHT
T ss_pred cc-cc-cccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCcCcchHHHHH
Confidence 55 32 446999999999775 678888899999999999999999999999999999999999986655 34554433
No 68
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.81 E-value=7.1e-21 Score=190.09 Aligned_cols=238 Identities=19% Similarity=0.162 Sum_probs=163.0
Q ss_pred CCCCCccEEEccCCCCCCCCCC-CCCCCCccEEeeccccC-CcccCcccc-------CCCCCCEEeccCCcCccccCCCC
Q 043008 35 KRAFKLKFINLSHSQCHIKIPD-PSETPNLERIDILNCTN-PACVLSSIT-------NFNHLSMLCFRHCKNLRHFPNNL 105 (517)
Q Consensus 35 ~~l~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~~~~-l~~~p~si~-------~l~~L~~L~L~~~~~l~~lp~~~ 105 (517)
...++|+.|++++|.+ .+|. +... |+.|+|++|.. ...+|..+. ++++|++|++++|.....+|..+
T Consensus 40 ~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 115 (312)
T 1wwl_A 40 GGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPL 115 (312)
T ss_dssp EEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCS
T ss_pred ccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHH
Confidence 3455677777777775 5553 3322 77777777655 234555554 67778888888877766677653
Q ss_pred ---CCCCCcEEEEecCCCCCccCCC---C-----CCCcEEEeecccCcccC-CcCCCCCCccEEEcccCcCCcc--cccc
Q 043008 106 ---HFVCPIIIDFSYCVNLTEFPQI---S-----GNIIDLILTETAIEEVP-SSTECLTNLQYLFLCSCKKLKR--VSTS 171 (517)
Q Consensus 106 ---~l~sL~~L~L~~c~~l~~~p~~---~-----~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~l~~~~~l~~--lp~~ 171 (517)
.+++|++|++++|.... +|.. + .+|++|++++|.+..++ ..+..+++|++|++++|.+.+. +|..
T Consensus 116 ~~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 194 (312)
T 1wwl_A 116 LEATGPDLNILNLRNVSWAT-RDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISA 194 (312)
T ss_dssp SSCCSCCCSEEEEESCBCSS-SSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHH
T ss_pred HHhcCCCccEEEccCCCCcc-hhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHH
Confidence 67778888888765433 3532 1 56788888888888666 6788888888888888877655 3334
Q ss_pred c--cCCCCCcEEEcCCCC-CcC---Cc-cCCCCCCCCEEEecCCCCCcch--hhhhcCCCCCEEeccCCCCCCcCCCC-C
Q 043008 172 I--CKFKSLVWLSLNNDL-TAI---PQ-EIGCLSSLECLNLGGNNFEGLP--ASIKQISRLECLDLSYCNSLQSLPEL-P 241 (517)
Q Consensus 172 l--~~l~~L~~L~Ls~~l-~~l---p~-~l~~l~~L~~L~Ls~n~l~~lp--~~l~~l~~L~~L~L~~c~~l~~lp~l-~ 241 (517)
+ ..+++|+.|++++|. ..+ +. .+..+++|++|+|++|+++..+ ..+..+++|+.|+|++ +.++.+|.. +
T Consensus 195 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~-N~l~~ip~~~~ 273 (312)
T 1wwl_A 195 LCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSF-TGLKQVPKGLP 273 (312)
T ss_dssp SCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTT-SCCSSCCSSCC
T ss_pred HHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCC-CccChhhhhcc
Confidence 4 788888888887653 422 22 2356788888888888888754 4556678888888887 456677764 3
Q ss_pred CCccEEecccccCcCcCCCCCchhhhcchhhHHhhhcCCCCC
Q 043008 242 LHLEVLLATNCKRLQSLPEIPSCLEELDASVLEKLSKHSFGE 283 (517)
Q Consensus 242 ~~L~~L~~~~c~~l~~l~~~~~~L~~L~~l~~~~Ls~n~~~~ 283 (517)
++|+.|++.++ .++.+ |. +..++.++.++|++|++++
T Consensus 274 ~~L~~L~Ls~N-~l~~~---p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 274 AKLSVLDLSYN-RLDRN---PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp SEEEEEECCSS-CCCSC---CC-TTTSCEEEEEECTTCTTTC
T ss_pred CCceEEECCCC-CCCCC---hh-HhhCCCCCEEeccCCCCCC
Confidence 57777777664 33333 34 7778888888899998774
No 69
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.80 E-value=1.6e-18 Score=188.78 Aligned_cols=100 Identities=27% Similarity=0.367 Sum_probs=73.5
Q ss_pred CccEEEcccCcCCc-cccccccCCCCCcEEEcCCC-CCcC-CccCCCCCCCCEEEecCCCCCcch-hhhhcCCCCCEEec
Q 043008 153 NLQYLFLCSCKKLK-RVSTSICKFKSLVWLSLNND-LTAI-PQEIGCLSSLECLNLGGNNFEGLP-ASIKQISRLECLDL 228 (517)
Q Consensus 153 ~L~~L~l~~~~~l~-~lp~~l~~l~~L~~L~Ls~~-l~~l-p~~l~~l~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L~L 228 (517)
+|+.|++++|.... ..|..+..+++|+.|++++| +..+ |..+.++++|++|+|++|+|+.++ ..+..+++|+.|+|
T Consensus 470 ~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L 549 (635)
T 4g8a_A 470 SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDY 549 (635)
T ss_dssp TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEEC
T ss_pred hhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEEC
Confidence 34444444443222 34566788899999999775 5555 667999999999999999999875 57899999999999
Q ss_pred cCCCCCCcCCC----CCCCccEEecccc
Q 043008 229 SYCNSLQSLPE----LPLHLEVLLATNC 252 (517)
Q Consensus 229 ~~c~~l~~lp~----l~~~L~~L~~~~c 252 (517)
++|+.....|+ ++++|+.|++.+.
T Consensus 550 s~N~l~~~~~~~l~~l~~~L~~L~L~~N 577 (635)
T 4g8a_A 550 SLNHIMTSKKQELQHFPSSLAFLNLTQN 577 (635)
T ss_dssp TTSCCCBCCSSCTTCCCTTCCEEECTTC
T ss_pred CCCcCCCCCHHHHHhhhCcCCEEEeeCC
Confidence 98544443343 3468889988764
No 70
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.80 E-value=1.5e-18 Score=171.47 Aligned_cols=194 Identities=17% Similarity=0.108 Sum_probs=121.6
Q ss_pred CCCCccEEeccCCCCCccccccCCCCCCccEEEccCCCCCCCCC-CCCCCCCccEEeeccccCCcccCccccCCCCCCEE
Q 043008 12 KPKNLVELNLPYGHKVVQIWEGKKRAFKLKFINLSHSQCHIKIP-DPSETPNLERIDILNCTNPACVLSSITNFNHLSML 90 (517)
Q Consensus 12 ~~~~L~~L~L~~n~~l~~l~~~~~~l~~L~~L~Ls~~~~l~~~p-~l~~l~~L~~L~L~~~~~l~~~p~si~~l~~L~~L 90 (517)
+++++++++++++ .++.+|.++. ++|+.|+|++|.+....| .+..+++|++|+|++|.. ..++.. +.+++|++|
T Consensus 8 ~l~~l~~l~~~~~-~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~-~~l~~L~~L 82 (290)
T 1p9a_G 8 KVASHLEVNCDKR-NLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL-TKLQVD-GTLPVLGTL 82 (290)
T ss_dssp CSTTCCEEECTTS-CCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCC-CEEECC-SCCTTCCEE
T ss_pred ccCCccEEECCCC-CCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCcc-CcccCC-CCCCcCCEE
Confidence 4556666777666 6666665543 466666666666433333 256666666666666533 233322 555666666
Q ss_pred eccCCcCccccCCCC-CCCCCcEEEEecCCCCCccCCCCCCCcEEEeecccCcccC-CcCCCCCCccEEEcccCcCCccc
Q 043008 91 CFRHCKNLRHFPNNL-HFVCPIIIDFSYCVNLTEFPQISGNIIDLILTETAIEEVP-SSTECLTNLQYLFLCSCKKLKRV 168 (517)
Q Consensus 91 ~L~~~~~l~~lp~~~-~l~sL~~L~L~~c~~l~~~p~~~~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~l~~~~~l~~l 168 (517)
++++|.. ..+|..+ .+++|+ .|++++|.++.+| ..+..+++|+.|++++|.+....
T Consensus 83 ~Ls~N~l-~~l~~~~~~l~~L~---------------------~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~ 140 (290)
T 1p9a_G 83 DLSHNQL-QSLPLLGQTLPALT---------------------VLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP 140 (290)
T ss_dssp ECCSSCC-SSCCCCTTTCTTCC---------------------EEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCC
T ss_pred ECCCCcC-CcCchhhccCCCCC---------------------EEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccC
Confidence 6666533 2444433 444444 4444445555554 34667777777777777666555
Q ss_pred cccccCCCCCcEEEcCCC-CCcCCcc-CCCCCCCCEEEecCCCCCcchhhhhcCCCCCEEeccCCC
Q 043008 169 STSICKFKSLVWLSLNND-LTAIPQE-IGCLSSLECLNLGGNNFEGLPASIKQISRLECLDLSYCN 232 (517)
Q Consensus 169 p~~l~~l~~L~~L~Ls~~-l~~lp~~-l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~c~ 232 (517)
+..+..+++|+.|++++| +..+|.. +..+++|+.|+|++|+++.+|..+..+.+|+.|+|++|+
T Consensus 141 ~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 141 PGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp TTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCC
T ss_pred hhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCC
Confidence 555667777777777654 4666654 467888888888888888888888888888888888754
No 71
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.79 E-value=6.8e-18 Score=164.77 Aligned_cols=195 Identities=17% Similarity=0.172 Sum_probs=132.8
Q ss_pred CCccEEeccCCCCCccccccCCCCCCccEEEccCCCCCCCCC-CCCCCCCccEEeeccccCCcccCccccCCCCCCEEec
Q 043008 14 KNLVELNLPYGHKVVQIWEGKKRAFKLKFINLSHSQCHIKIP-DPSETPNLERIDILNCTNPACVLSSITNFNHLSMLCF 92 (517)
Q Consensus 14 ~~L~~L~L~~n~~l~~l~~~~~~l~~L~~L~Ls~~~~l~~~p-~l~~l~~L~~L~L~~~~~l~~~p~si~~l~~L~~L~L 92 (517)
.+++.++++++ .++.+|..+. ++|+.|+|++|.+....+ .|.++++|++|+|++|......+..+..+++|++|++
T Consensus 16 ~~~~~l~~~~~-~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l 92 (270)
T 2o6q_A 16 NNKNSVDCSSK-KLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWV 92 (270)
T ss_dssp TTTTEEECTTS-CCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEEC
T ss_pred CCCCEEEccCC-CCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEEC
Confidence 35677888888 7888876554 578888888887443333 3778888888888887544333334577888888888
Q ss_pred cCCcCccccCCCC-CCCCCcEEEEecCCCCCccCCCCCCCcEEEeecccCcccCC-cCCCCCCccEEEcccCcCCccccc
Q 043008 93 RHCKNLRHFPNNL-HFVCPIIIDFSYCVNLTEFPQISGNIIDLILTETAIEEVPS-STECLTNLQYLFLCSCKKLKRVST 170 (517)
Q Consensus 93 ~~~~~l~~lp~~~-~l~sL~~L~L~~c~~l~~~p~~~~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~l~~~~~l~~lp~ 170 (517)
++|......+..+ .+++|++|++++| .++.++. .+..+++|++|++++|.+....+.
T Consensus 93 ~~n~l~~~~~~~~~~l~~L~~L~l~~n---------------------~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 151 (270)
T 2o6q_A 93 TDNKLQALPIGVFDQLVNLAELRLDRN---------------------QLKSLPPRVFDSLTKLTYLSLGYNELQSLPKG 151 (270)
T ss_dssp CSSCCCCCCTTTTTTCSSCCEEECCSS---------------------CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred CCCcCCcCCHhHcccccCCCEEECCCC---------------------ccCeeCHHHhCcCcCCCEEECCCCcCCccCHh
Confidence 8776543333333 5666666666664 3443332 356677777777777765554445
Q ss_pred cccCCCCCcEEEcCCC-CCcCCc-cCCCCCCCCEEEecCCCCCcchh-hhhcCCCCCEEeccCCC
Q 043008 171 SICKFKSLVWLSLNND-LTAIPQ-EIGCLSSLECLNLGGNNFEGLPA-SIKQISRLECLDLSYCN 232 (517)
Q Consensus 171 ~l~~l~~L~~L~Ls~~-l~~lp~-~l~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~L~~c~ 232 (517)
.+..+++|+.|++++| +..++. .+..+++|++|+|++|+++.+|. .+..+++|+.|+|++|+
T Consensus 152 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 152 VFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred HccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCC
Confidence 5677777777777654 455554 47788889999999999988775 47788899999998864
No 72
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.79 E-value=1.1e-18 Score=170.75 Aligned_cols=220 Identities=15% Similarity=0.136 Sum_probs=136.8
Q ss_pred EEeccCCCCCccccccCCCCCCccEEEccCCCCCCCCC-CCCCCCCccEEeeccccCCcccCccccCCCCCCEEeccCCc
Q 043008 18 ELNLPYGHKVVQIWEGKKRAFKLKFINLSHSQCHIKIP-DPSETPNLERIDILNCTNPACVLSSITNFNHLSMLCFRHCK 96 (517)
Q Consensus 18 ~L~L~~n~~l~~l~~~~~~l~~L~~L~Ls~~~~l~~~p-~l~~l~~L~~L~L~~~~~l~~~p~si~~l~~L~~L~L~~~~ 96 (517)
..+..+. .+..+|..+. ++|++|+|++|.+....+ .+.++++|++|+|++|......+..++.+++|++|++++|.
T Consensus 11 ~~~c~~~-~l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 87 (276)
T 2z62_A 11 TYQCMEL-NFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87 (276)
T ss_dssp EEECTTS-CCSSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred eEEecCC-CccccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc
Confidence 3455555 6677776553 578888888887554444 47888888888888886555555577888888888888876
Q ss_pred CccccCCCC-CCCCCcEEEEecCCCCCccCCCCCCCcEEEeecccCcccCC-cCCCCCCccEEEcccCcCCc-ccccccc
Q 043008 97 NLRHFPNNL-HFVCPIIIDFSYCVNLTEFPQISGNIIDLILTETAIEEVPS-STECLTNLQYLFLCSCKKLK-RVSTSIC 173 (517)
Q Consensus 97 ~l~~lp~~~-~l~sL~~L~L~~c~~l~~~p~~~~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~l~~~~~l~-~lp~~l~ 173 (517)
.....+..+ ++++|++|++++| .+..++. .+..+++|++|++++|.+.. .+|..+.
T Consensus 88 l~~~~~~~~~~l~~L~~L~l~~n---------------------~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~ 146 (276)
T 2z62_A 88 IQSLALGAFSGLSSLQKLVAVET---------------------NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS 146 (276)
T ss_dssp CCEECTTTTTTCTTCCEEECTTS---------------------CCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGG
T ss_pred cCccChhhhcCCccccEEECCCC---------------------CccccCchhcccCCCCCEEECcCCccceecCchhhc
Confidence 655544555 6666666666554 3333332 46777888888888886655 3566677
Q ss_pred CCCCCcEEEcCCC-CCcCC-ccCCCCCCCC----EEEecCCCCCcchhhhhcCCCCCEEeccCCCCCCcCCCCCCCccEE
Q 043008 174 KFKSLVWLSLNND-LTAIP-QEIGCLSSLE----CLNLGGNNFEGLPASIKQISRLECLDLSYCNSLQSLPELPLHLEVL 247 (517)
Q Consensus 174 ~l~~L~~L~Ls~~-l~~lp-~~l~~l~~L~----~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~l~~~L~~L 247 (517)
.+++|+.|++++| +..++ ..+..+++|+ .|++++|.++.+|.......+|+.|+|++| .++.+|.
T Consensus 147 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n-~l~~~~~-------- 217 (276)
T 2z62_A 147 NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTN-QLKSVPD-------- 217 (276)
T ss_dssp GCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSS-CCSCCCT--------
T ss_pred cCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCCCcccEEECCCC-ceeecCH--------
Confidence 7777777777554 33333 2344444444 666666666666555555556666666653 3444332
Q ss_pred ecccccCcCcCCCCCchhhhcchhhHHhhhcCCCCCcc
Q 043008 248 LATNCKRLQSLPEIPSCLEELDASVLEKLSKHSFGEEY 285 (517)
Q Consensus 248 ~~~~c~~l~~l~~~~~~L~~L~~l~~~~Ls~n~~~~~~ 285 (517)
..+..++.+..++|++|++.+.|
T Consensus 218 ---------------~~~~~l~~L~~L~l~~N~~~c~c 240 (276)
T 2z62_A 218 ---------------GIFDRLTSLQKIWLHTNPWDCSC 240 (276)
T ss_dssp ---------------TTTTTCCSCCEEECCSSCBCCCT
T ss_pred ---------------hHhcccccccEEEccCCcccccC
Confidence 22344444555667778876543
No 73
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.79 E-value=3.6e-19 Score=177.47 Aligned_cols=215 Identities=18% Similarity=0.158 Sum_probs=143.1
Q ss_pred CCccEEeccCCCCCcc--ccc--cCCCCCCccEEEccCCCCCCCCCC-C--CCCCCccEEeeccccCCcccC----cccc
Q 043008 14 KNLVELNLPYGHKVVQ--IWE--GKKRAFKLKFINLSHSQCHIKIPD-P--SETPNLERIDILNCTNPACVL----SSIT 82 (517)
Q Consensus 14 ~~L~~L~L~~n~~l~~--l~~--~~~~l~~L~~L~Ls~~~~l~~~p~-l--~~l~~L~~L~L~~~~~l~~~p----~si~ 82 (517)
..++.|.+.++ .+.. +.. ....+++|++|+|++|.+....|. + ..+++|++|+|++|......+ ..+.
T Consensus 64 ~~l~~l~l~~~-~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~ 142 (310)
T 4glp_A 64 LRVRRLTVGAA-QVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW 142 (310)
T ss_dssp CCCCEEEECSC-CCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT
T ss_pred cceeEEEEeCC-cCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh
Confidence 34566666665 4431 110 112345688888888887666664 4 778888888888886655443 3445
Q ss_pred CCCCCCEEeccCCcCccccCCCC-CCCCCcEEEEecCCCCCc--c-----CCCCCCCcEEEeecccCcccCCc----CCC
Q 043008 83 NFNHLSMLCFRHCKNLRHFPNNL-HFVCPIIIDFSYCVNLTE--F-----PQISGNIIDLILTETAIEEVPSS----TEC 150 (517)
Q Consensus 83 ~l~~L~~L~L~~~~~l~~lp~~~-~l~sL~~L~L~~c~~l~~--~-----p~~~~~L~~L~L~~~~i~~lp~~----i~~ 150 (517)
.+++|++|++++|......|..+ .+++|++|++++|..... + ...+.+|++|++++|.++.++.. +..
T Consensus 143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~ 222 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAA 222 (310)
T ss_dssp BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHH
T ss_pred hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhc
Confidence 67888888888887766556666 788888888888764431 1 13455677788888877755542 456
Q ss_pred CCCccEEEcccCcCCccccccccCC---CCCcEEEcCCC-CCcCCccCCCCCCCCEEEecCCCCCcchhhhhcCCCCCEE
Q 043008 151 LTNLQYLFLCSCKKLKRVSTSICKF---KSLVWLSLNND-LTAIPQEIGCLSSLECLNLGGNNFEGLPASIKQISRLECL 226 (517)
Q Consensus 151 l~~L~~L~l~~~~~l~~lp~~l~~l---~~L~~L~Ls~~-l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L 226 (517)
+++|++|++++|.+.+..|..+..+ ++|+.|++++| +..+|..+. ++|+.|+|++|+++.+|. +..+++|+.|
T Consensus 223 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L 299 (310)
T 4glp_A 223 GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRLNRAPQ-PDELPEVDNL 299 (310)
T ss_dssp TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCCCSCCC-TTSCCCCSCE
T ss_pred CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCcCCCCch-hhhCCCccEE
Confidence 7788888888887766666666555 57777777654 466666553 677777777777777664 5677777777
Q ss_pred eccCCC
Q 043008 227 DLSYCN 232 (517)
Q Consensus 227 ~L~~c~ 232 (517)
+|++|+
T Consensus 300 ~L~~N~ 305 (310)
T 4glp_A 300 TLDGNP 305 (310)
T ss_dssp ECSSTT
T ss_pred ECcCCC
Confidence 777643
No 74
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.78 E-value=7.5e-19 Score=171.82 Aligned_cols=220 Identities=15% Similarity=0.086 Sum_probs=135.3
Q ss_pred ccEEeccCCCCCccccccCCCCCCccEEEccCCCCCCCCCCCCCCCCccEEeeccccCCcccCccccCCCCCCEEeccCC
Q 043008 16 LVELNLPYGHKVVQIWEGKKRAFKLKFINLSHSQCHIKIPDPSETPNLERIDILNCTNPACVLSSITNFNHLSMLCFRHC 95 (517)
Q Consensus 16 L~~L~L~~n~~l~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~~~~l~~~p~si~~l~~L~~L~L~~~ 95 (517)
+..+++..+ .+..+ .....+++|+.|++++|. +..++.+..+++|++|++++|... .+ +.++.+++|++|++++|
T Consensus 21 l~~l~l~~~-~~~~~-~~~~~l~~L~~L~l~~~~-i~~~~~l~~l~~L~~L~l~~n~l~-~~-~~l~~l~~L~~L~L~~n 95 (272)
T 3rfs_A 21 TIKANLKKK-SVTDA-VTQNELNSIDQIIANNSD-IKSVQGIQYLPNVRYLALGGNKLH-DI-SALKELTNLTYLILTGN 95 (272)
T ss_dssp HHHHHHTCS-CTTSE-ECHHHHTTCCEEECTTSC-CCCCTTGGGCTTCCEEECTTSCCC-CC-GGGTTCTTCCEEECTTS
T ss_pred HHHHHhcCc-ccccc-cccccccceeeeeeCCCC-cccccccccCCCCcEEECCCCCCC-Cc-hhhcCCCCCCEEECCCC
Confidence 333444444 33332 223345566666666655 344555556666666666665432 22 35566666666666666
Q ss_pred cCccccCCCC-CCCCCcEEEEecCCCCCccCCC---CCCCcEEEeecccCcccCCc-CCCCCCccEEEcccCcCCccccc
Q 043008 96 KNLRHFPNNL-HFVCPIIIDFSYCVNLTEFPQI---SGNIIDLILTETAIEEVPSS-TECLTNLQYLFLCSCKKLKRVST 170 (517)
Q Consensus 96 ~~l~~lp~~~-~l~sL~~L~L~~c~~l~~~p~~---~~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~l~~~~~l~~lp~ 170 (517)
......+..+ .+++|++|++++|......+.. +.+|+.|++++|.++.+|.. +..+++|+.|++++|.+.+..+.
T Consensus 96 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 175 (272)
T 3rfs_A 96 QLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEG 175 (272)
T ss_dssp CCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred ccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHH
Confidence 4443333333 5666666666665433222222 23456666667777766554 57788888888888877766666
Q ss_pred cccCCCCCcEEEcCCC-CCcCCc-cCCCCCCCCEEEecCCCCCcchhhhhcCCCCCEEeccCCCCCCcCCCCCCCccE
Q 043008 171 SICKFKSLVWLSLNND-LTAIPQ-EIGCLSSLECLNLGGNNFEGLPASIKQISRLECLDLSYCNSLQSLPELPLHLEV 246 (517)
Q Consensus 171 ~l~~l~~L~~L~Ls~~-l~~lp~-~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~l~~~L~~ 246 (517)
.+..+++|+.|++++| +..++. .+..+++|+.|+|++|.+.. .+++|+.|+++.|+....+|.....+..
T Consensus 176 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~------~~~~l~~l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 176 VFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC------TCPGIRYLSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC------CTTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred HhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccc------cCcHHHHHHHHHHhCCCcccCcccccCC
Confidence 6788888888888764 455554 47888999999999997653 3567888888877666777776655443
No 75
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.78 E-value=6.7e-18 Score=161.64 Aligned_cols=200 Identities=17% Similarity=0.143 Sum_probs=163.3
Q ss_pred CCCCCCCCCCCCccEEeeccccCCcccCccccCCCCCCEEeccCCcCccccCC-CC-CCCCCcEEEEecCCCCCccCC-C
Q 043008 51 HIKIPDPSETPNLERIDILNCTNPACVLSSITNFNHLSMLCFRHCKNLRHFPN-NL-HFVCPIIIDFSYCVNLTEFPQ-I 127 (517)
Q Consensus 51 l~~~p~l~~l~~L~~L~L~~~~~l~~~p~si~~l~~L~~L~L~~~~~l~~lp~-~~-~l~sL~~L~L~~c~~l~~~p~-~ 127 (517)
++.+|. -.++|++|++++|......+..++++++|++|++++|..++.+|. .+ ++++|++|++++|+.++.+|. .
T Consensus 23 l~~ip~--~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~ 100 (239)
T 2xwt_C 23 IQRIPS--LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDA 100 (239)
T ss_dssp CSSCCC--CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTS
T ss_pred ccccCC--CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHH
Confidence 677787 345899999999976555555899999999999999975666665 55 999999999999777777774 3
Q ss_pred ---CCCCcEEEeecccCcccCCcCCCCCCcc---EEEcccC-cCCccccccccCCCCCc-EEEcCCC-CCcCCccCCCCC
Q 043008 128 ---SGNIIDLILTETAIEEVPSSTECLTNLQ---YLFLCSC-KKLKRVSTSICKFKSLV-WLSLNND-LTAIPQEIGCLS 198 (517)
Q Consensus 128 ---~~~L~~L~L~~~~i~~lp~~i~~l~~L~---~L~l~~~-~~l~~lp~~l~~l~~L~-~L~Ls~~-l~~lp~~l~~l~ 198 (517)
+.+|+.|++++|.++.+|. +..+++|+ .|++++| .+....+..+.++++|+ .|++++| +..+|......+
T Consensus 101 f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~ 179 (239)
T 2xwt_C 101 LKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGT 179 (239)
T ss_dssp EECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTC
T ss_pred hCCCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCC
Confidence 4578999999999999997 88888888 9999999 65555556689999999 9999764 677887655558
Q ss_pred CCCEEEecCC-CCCcch-hhhhcC-CCCCEEeccCCCCCCcCCC-CCCCccEEecccccC
Q 043008 199 SLECLNLGGN-NFEGLP-ASIKQI-SRLECLDLSYCNSLQSLPE-LPLHLEVLLATNCKR 254 (517)
Q Consensus 199 ~L~~L~Ls~n-~l~~lp-~~l~~l-~~L~~L~L~~c~~l~~lp~-l~~~L~~L~~~~c~~ 254 (517)
+|+.|+|++| .++.+| ..+..+ ++|+.|++++ +.++.+|. .+++|+.|++.++..
T Consensus 180 ~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~-N~l~~l~~~~~~~L~~L~l~~~~~ 238 (239)
T 2xwt_C 180 KLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQ-TSVTALPSKGLEHLKELIARNTWT 238 (239)
T ss_dssp EEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTT-CCCCCCCCTTCTTCSEEECTTC--
T ss_pred CCCEEEcCCCCCcccCCHHHhhccccCCcEEECCC-CccccCChhHhccCceeeccCccC
Confidence 9999999999 499886 567888 9999999998 66777775 468899998887654
No 76
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.77 E-value=1.3e-18 Score=170.15 Aligned_cols=172 Identities=20% Similarity=0.234 Sum_probs=88.0
Q ss_pred CCCCCCccEEeeccccCCcccCccccCCCCCCEEeccCCcCccccCCCC-CCCCCcEEEEecCCCCCccCCC---CCCCc
Q 043008 57 PSETPNLERIDILNCTNPACVLSSITNFNHLSMLCFRHCKNLRHFPNNL-HFVCPIIIDFSYCVNLTEFPQI---SGNII 132 (517)
Q Consensus 57 l~~l~~L~~L~L~~~~~l~~~p~si~~l~~L~~L~L~~~~~l~~lp~~~-~l~sL~~L~L~~c~~l~~~p~~---~~~L~ 132 (517)
...+++|+.|++.+|. +..+ ..++.+++|++|++++|.... ++ .+ .+++|++|++++|......+.. +.+|+
T Consensus 37 ~~~l~~L~~L~l~~~~-i~~~-~~l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 112 (272)
T 3rfs_A 37 QNELNSIDQIIANNSD-IKSV-QGIQYLPNVRYLALGGNKLHD-IS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLK 112 (272)
T ss_dssp HHHHTTCCEEECTTSC-CCCC-TTGGGCTTCCEEECTTSCCCC-CG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred cccccceeeeeeCCCC-cccc-cccccCCCCcEEECCCCCCCC-ch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCC
Confidence 3445556666665553 2222 235555666666666554332 22 23 5556666666654332222222 23445
Q ss_pred EEEeecccCcccCCc-CCCCCCccEEEcccCcCCccccccccCCCCCcEEEcCCC-CCcCCcc-CCCCCCCCEEEecCCC
Q 043008 133 DLILTETAIEEVPSS-TECLTNLQYLFLCSCKKLKRVSTSICKFKSLVWLSLNND-LTAIPQE-IGCLSSLECLNLGGNN 209 (517)
Q Consensus 133 ~L~L~~~~i~~lp~~-i~~l~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~Ls~~-l~~lp~~-l~~l~~L~~L~Ls~n~ 209 (517)
+|++++|.++.+|.. +..+++|++|++++|.+.+..+..+..+++|+.|++++| +..++.. +..+++|+.|++++|+
T Consensus 113 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 192 (272)
T 3rfs_A 113 ELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQ 192 (272)
T ss_dssp EEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCc
Confidence 666666666555443 455566666666665544444444555566666666443 3333332 4555666666666666
Q ss_pred CCcchh-hhhcCCCCCEEeccCCC
Q 043008 210 FEGLPA-SIKQISRLECLDLSYCN 232 (517)
Q Consensus 210 l~~lp~-~l~~l~~L~~L~L~~c~ 232 (517)
++.+|. .+..+++|+.|++++|+
T Consensus 193 l~~~~~~~~~~l~~L~~L~l~~N~ 216 (272)
T 3rfs_A 193 LKSVPDGVFDRLTSLQYIWLHDNP 216 (272)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCccCHHHHhCCcCCCEEEccCCC
Confidence 655443 34555666666666543
No 77
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.77 E-value=3.3e-18 Score=170.47 Aligned_cols=191 Identities=15% Similarity=0.207 Sum_probs=120.4
Q ss_pred CCCCccEEEccCCCCCCCCCCCCCCCCccEEeeccccCCcccCccccCCCCCCEEeccCCcCccccCCCC-CCCCCcEEE
Q 043008 36 RAFKLKFINLSHSQCHIKIPDPSETPNLERIDILNCTNPACVLSSITNFNHLSMLCFRHCKNLRHFPNNL-HFVCPIIID 114 (517)
Q Consensus 36 ~l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~~~~l~~~p~si~~l~~L~~L~L~~~~~l~~lp~~~-~l~sL~~L~ 114 (517)
.+++|+.|++++|. +..+|.+..+++|++|+|++|.. ..++. +..+++|++|++++|.. ..++ .+ .+++|+.|+
T Consensus 39 ~l~~L~~L~l~~~~-i~~l~~~~~l~~L~~L~L~~n~i-~~~~~-~~~l~~L~~L~L~~n~l-~~~~-~~~~l~~L~~L~ 113 (308)
T 1h6u_A 39 DLDGITTLSAFGTG-VTTIEGVQYLNNLIGLELKDNQI-TDLAP-LKNLTKITELELSGNPL-KNVS-AIAGLQSIKTLD 113 (308)
T ss_dssp HHHTCCEEECTTSC-CCCCTTGGGCTTCCEEECCSSCC-CCCGG-GTTCCSCCEEECCSCCC-SCCG-GGTTCTTCCEEE
T ss_pred HcCCcCEEEeeCCC-ccCchhhhccCCCCEEEccCCcC-CCChh-HccCCCCCEEEccCCcC-CCch-hhcCCCCCCEEE
Confidence 45566666666665 34455566666666666666533 33333 66666666666666653 2333 23 566666666
Q ss_pred EecCCCCCccCC--CCCCCcEEEeecccCcccCCcCCCCCCccEEEcccCcCCccccccccCCCCCcEEEcCCC-CCcCC
Q 043008 115 FSYCVNLTEFPQ--ISGNIIDLILTETAIEEVPSSTECLTNLQYLFLCSCKKLKRVSTSICKFKSLVWLSLNND-LTAIP 191 (517)
Q Consensus 115 L~~c~~l~~~p~--~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~Ls~~-l~~lp 191 (517)
+++|. +..++. .+.+|+.|++++|.+..++. +..+++|+.|++++|.+.. ++. +..+++|+.|++++| +..++
T Consensus 114 l~~n~-l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~ 189 (308)
T 1h6u_A 114 LTSTQ-ITDVTPLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSD-LTP-LANLSKLTTLKADDNKISDIS 189 (308)
T ss_dssp CTTSC-CCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCCCG
T ss_pred CCCCC-CCCchhhcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCC-Chh-hcCCCCCCEEECCCCccCcCh
Confidence 66644 233332 23445666666666666655 6777788888888776554 333 777778888888664 34444
Q ss_pred ccCCCCCCCCEEEecCCCCCcchhhhhcCCCCCEEeccCCCCCCcCC
Q 043008 192 QEIGCLSSLECLNLGGNNFEGLPASIKQISRLECLDLSYCNSLQSLP 238 (517)
Q Consensus 192 ~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp 238 (517)
. +..+++|+.|+|++|+++.++ .+..+++|+.|++++| .++..|
T Consensus 190 ~-l~~l~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~l~~N-~i~~~~ 233 (308)
T 1h6u_A 190 P-LASLPNLIEVHLKNNQISDVS-PLANTSNLFIVTLTNQ-TITNQP 233 (308)
T ss_dssp G-GGGCTTCCEEECTTSCCCBCG-GGTTCTTCCEEEEEEE-EEECCC
T ss_pred h-hcCCCCCCEEEccCCccCccc-cccCCCCCCEEEccCC-eeecCC
Confidence 3 677888888888888888877 4788888888888874 445444
No 78
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.77 E-value=2.6e-17 Score=160.61 Aligned_cols=185 Identities=22% Similarity=0.306 Sum_probs=138.8
Q ss_pred CCCCCCCCCCCCCccEEeccCCCCCcccc-ccCCCCCCccEEEccCCCCCCCCC-C-CCCCCCccEEeeccccCCcccCc
Q 043008 3 PLRTLPSNFKPKNLVELNLPYGHKVVQIW-EGKKRAFKLKFINLSHSQCHIKIP-D-PSETPNLERIDILNCTNPACVLS 79 (517)
Q Consensus 3 pl~~lP~~f~~~~L~~L~L~~n~~l~~l~-~~~~~l~~L~~L~Ls~~~~l~~~p-~-l~~l~~L~~L~L~~~~~l~~~p~ 79 (517)
.++.+|..+ +++|++|+|++| .+..++ ..+..+++|++|+|++|.+ ..+| . |..+++|++|+|++|......+.
T Consensus 27 ~l~~ip~~~-~~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l-~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~ 103 (270)
T 2o6q_A 27 KLTAIPSNI-PADTKKLDLQSN-KLSSLPSKAFHRLTKLRLLYLNDNKL-QTLPAGIFKELKNLETLWVTDNKLQALPIG 103 (270)
T ss_dssp CCSSCCSCC-CTTCSEEECCSS-CCSCCCTTSSSSCTTCCEEECCSSCC-SCCCTTTTSSCTTCCEEECCSSCCCCCCTT
T ss_pred CCCccCCCC-CCCCCEEECcCC-CCCeeCHHHhcCCCCCCEEECCCCcc-CeeChhhhcCCCCCCEEECCCCcCCcCCHh
Confidence 467888776 578999999999 999886 4789999999999999985 4555 3 68899999999999976655556
Q ss_pred cccCCCCCCEEeccCCcCccccCCCC-CCCCCcEEEEecCCCCCccCCCCCCCcEEEeecccCcccCCc-CCCCCCccEE
Q 043008 80 SITNFNHLSMLCFRHCKNLRHFPNNL-HFVCPIIIDFSYCVNLTEFPQISGNIIDLILTETAIEEVPSS-TECLTNLQYL 157 (517)
Q Consensus 80 si~~l~~L~~L~L~~~~~l~~lp~~~-~l~sL~~L~L~~c~~l~~~p~~~~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L 157 (517)
.+..+++|++|++++|......+..+ .+++|++|++++|. +..+|.. +..+++|+.|
T Consensus 104 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~---------------------l~~~~~~~~~~l~~L~~L 162 (270)
T 2o6q_A 104 VFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNE---------------------LQSLPKGVFDKLTSLKEL 162 (270)
T ss_dssp TTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC---------------------CCCCCTTTTTTCTTCCEE
T ss_pred HcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCc---------------------CCccCHhHccCCccccee
Confidence 77999999999999997766555555 78888888877753 3333332 4566667777
Q ss_pred EcccCcCCccccccccCCCCCcEEEcCCC-CCcCCc-cCCCCCCCCEEEecCCCCC
Q 043008 158 FLCSCKKLKRVSTSICKFKSLVWLSLNND-LTAIPQ-EIGCLSSLECLNLGGNNFE 211 (517)
Q Consensus 158 ~l~~~~~l~~lp~~l~~l~~L~~L~Ls~~-l~~lp~-~l~~l~~L~~L~Ls~n~l~ 211 (517)
++++|.+....+..+..+++|+.|++++| +..+|. .+..+++|+.|+|++|.+.
T Consensus 163 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 163 RLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp ECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred EecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence 77666555555555666777777777554 455554 3677888999999998764
No 79
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.77 E-value=1.8e-17 Score=163.65 Aligned_cols=181 Identities=18% Similarity=0.207 Sum_probs=142.8
Q ss_pred CCCCCCccEEEccCCCCCCCCCC-CCCCCCccEEeeccccCCcccCccccCCCCCCEEeccCCcCccccCCCCCCCCCcE
Q 043008 34 KKRAFKLKFINLSHSQCHIKIPD-PSETPNLERIDILNCTNPACVLSSITNFNHLSMLCFRHCKNLRHFPNNLHFVCPII 112 (517)
Q Consensus 34 ~~~l~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~~~~l~~~p~si~~l~~L~~L~L~~~~~l~~lp~~~~l~sL~~ 112 (517)
+.++++|+.++++++. ++.+|. +. ++|+.|+|++|......+..+..+++|++|++++|... .++..-.+
T Consensus 6 ~~~l~~l~~l~~~~~~-l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~l----- 76 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRN-LTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVDGTL----- 76 (290)
T ss_dssp EECSTTCCEEECTTSC-CSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEECCSCC-----
T ss_pred ccccCCccEEECCCCC-CCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccC-cccCCCCC-----
Confidence 4577889999999887 556663 43 68999999998776666778888999999999887543 23321233
Q ss_pred EEEecCCCCCccCCCCCCCcEEEeecccCcccCCcCCCCCCccEEEcccCcCCccccccccCCCCCcEEEcCCC-CCcCC
Q 043008 113 IDFSYCVNLTEFPQISGNIIDLILTETAIEEVPSSTECLTNLQYLFLCSCKKLKRVSTSICKFKSLVWLSLNND-LTAIP 191 (517)
Q Consensus 113 L~L~~c~~l~~~p~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~Ls~~-l~~lp 191 (517)
.+|+.|++++|.+..+|..+..+++|+.|++++|.+.+..+..+..+++|+.|++++| +..+|
T Consensus 77 ----------------~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~ 140 (290)
T 1p9a_G 77 ----------------PVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP 140 (290)
T ss_dssp ----------------TTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCC
T ss_pred ----------------CcCCEEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccC
Confidence 3456666666777788888899999999999999888777788999999999999775 56666
Q ss_pred cc-CCCCCCCCEEEecCCCCCcchhh-hhcCCCCCEEeccCCCCCCcCCCC
Q 043008 192 QE-IGCLSSLECLNLGGNNFEGLPAS-IKQISRLECLDLSYCNSLQSLPEL 240 (517)
Q Consensus 192 ~~-l~~l~~L~~L~Ls~n~l~~lp~~-l~~l~~L~~L~L~~c~~l~~lp~l 240 (517)
.. +..+++|+.|+|++|+++.+|.. +..+++|+.|+|++ +.++.+|..
T Consensus 141 ~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~-N~l~~ip~~ 190 (290)
T 1p9a_G 141 PGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQE-NSLYTIPKG 190 (290)
T ss_dssp TTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCS-SCCCCCCTT
T ss_pred hhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCC-CcCCccChh
Confidence 54 68899999999999999998865 57899999999997 567777653
No 80
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.74 E-value=3.4e-19 Score=183.15 Aligned_cols=220 Identities=15% Similarity=0.097 Sum_probs=143.0
Q ss_pred CCCCccEEeccCCCCCcc-----ccccCCCCCCccEEEccCCCC---CCCCCC-C-------CCCCCccEEeeccccCCc
Q 043008 12 KPKNLVELNLPYGHKVVQ-----IWEGKKRAFKLKFINLSHSQC---HIKIPD-P-------SETPNLERIDILNCTNPA 75 (517)
Q Consensus 12 ~~~~L~~L~L~~n~~l~~-----l~~~~~~l~~L~~L~Ls~~~~---l~~~p~-l-------~~l~~L~~L~L~~~~~l~ 75 (517)
.+++|++|+|++| .+.. +...+..+++|++|+|++|.+ ...+|. + ..+++|++|+|++|....
T Consensus 30 ~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~ 108 (386)
T 2ca6_A 30 EDDSVKEIVLSGN-TIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGP 108 (386)
T ss_dssp HCSCCCEEECTTS-EECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCT
T ss_pred cCCCccEEECCCC-CCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCH
Confidence 4677888888887 6663 334567788888888887642 123331 2 567888888888876555
Q ss_pred ----ccCccccCCCCCCEEeccCCcCccccCCCC-----CC---------CCCcEEEEecCCCC-CccCC------CCCC
Q 043008 76 ----CVLSSITNFNHLSMLCFRHCKNLRHFPNNL-----HF---------VCPIIIDFSYCVNL-TEFPQ------ISGN 130 (517)
Q Consensus 76 ----~~p~si~~l~~L~~L~L~~~~~l~~lp~~~-----~l---------~sL~~L~L~~c~~l-~~~p~------~~~~ 130 (517)
.++..+..+++|++|+|++|......+..+ .+ ++|++|++++|... ..+|. ...+
T Consensus 109 ~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~ 188 (386)
T 2ca6_A 109 TAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRL 188 (386)
T ss_dssp TTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCC
Confidence 366677778888888888876543222222 23 67888888876543 23331 2346
Q ss_pred CcEEEeecccCc------ccCCcCCCCCCccEEEcccCcCC----ccccccccCCCCCcEEEcCCCC-C-----cCCccC
Q 043008 131 IIDLILTETAIE------EVPSSTECLTNLQYLFLCSCKKL----KRVSTSICKFKSLVWLSLNNDL-T-----AIPQEI 194 (517)
Q Consensus 131 L~~L~L~~~~i~------~lp~~i~~l~~L~~L~l~~~~~l----~~lp~~l~~l~~L~~L~Ls~~l-~-----~lp~~l 194 (517)
|+.|++++|.+. .+|..+..+++|+.|++++|.+. ..+|..+..+++|+.|++++|. . .++..+
T Consensus 189 L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l 268 (386)
T 2ca6_A 189 LHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAF 268 (386)
T ss_dssp CCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHH
T ss_pred cCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHH
Confidence 777777777776 23446677777777777777654 5566677777777777776653 1 134554
Q ss_pred --CCCCCCCEEEecCCCCCc-----chhhh-hcCCCCCEEeccCCC
Q 043008 195 --GCLSSLECLNLGGNNFEG-----LPASI-KQISRLECLDLSYCN 232 (517)
Q Consensus 195 --~~l~~L~~L~Ls~n~l~~-----lp~~l-~~l~~L~~L~L~~c~ 232 (517)
+.+++|+.|+|++|.++. +|..+ .++++|+.|+|++|+
T Consensus 269 ~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 269 SKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp HTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred hhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCc
Confidence 347777777777777776 67666 557777777777644
No 81
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.74 E-value=3.2e-19 Score=179.37 Aligned_cols=216 Identities=16% Similarity=0.137 Sum_probs=148.3
Q ss_pred CCCccEEeccCCCCCccccccCCCC--CCccEEEccCCCCCCCCCCCCCCCCccEEeeccccCCcc-cCccccCCCCCCE
Q 043008 13 PKNLVELNLPYGHKVVQIWEGKKRA--FKLKFINLSHSQCHIKIPDPSETPNLERIDILNCTNPAC-VLSSITNFNHLSM 89 (517)
Q Consensus 13 ~~~L~~L~L~~n~~l~~l~~~~~~l--~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~~~~l~~-~p~si~~l~~L~~ 89 (517)
+..++.|+++++ .+. +..+..+ ++++.|++++|.+....+.+..+++|++|+|++|..... ++..+..+++|++
T Consensus 46 ~~~~~~l~l~~~-~~~--~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~ 122 (336)
T 2ast_B 46 ESLWQTLDLTGK-NLH--PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQN 122 (336)
T ss_dssp STTSSEEECTTC-BCC--HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSE
T ss_pred chhheeeccccc-cCC--HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCE
Confidence 445788899888 665 3445555 789999999998777777777889999999999875544 7777888999999
Q ss_pred EeccCCcCccccCCCC-CCCCCcEEEEecCCCCCc--cCC---CCCCCcEEEeecc-cCcc--cCCcCCCCC-CccEEEc
Q 043008 90 LCFRHCKNLRHFPNNL-HFVCPIIIDFSYCVNLTE--FPQ---ISGNIIDLILTET-AIEE--VPSSTECLT-NLQYLFL 159 (517)
Q Consensus 90 L~L~~~~~l~~lp~~~-~l~sL~~L~L~~c~~l~~--~p~---~~~~L~~L~L~~~-~i~~--lp~~i~~l~-~L~~L~l 159 (517)
|++++|......|..+ .+++|++|++++|..+.. ++. ...+|++|++++| .++. ++..+..++ +|++|++
T Consensus 123 L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l 202 (336)
T 2ast_B 123 LSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNL 202 (336)
T ss_dssp EECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEEC
T ss_pred EeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEe
Confidence 9999987665666656 788999999998855542 333 2456677777777 6663 555566677 7777777
Q ss_pred ccCc--CC-ccccccccCCCCCcEEEcCCCC---CcCCccCCCCCCCCEEEecCCC-CCc-chhhhhcCCCCCEEeccCC
Q 043008 160 CSCK--KL-KRVSTSICKFKSLVWLSLNNDL---TAIPQEIGCLSSLECLNLGGNN-FEG-LPASIKQISRLECLDLSYC 231 (517)
Q Consensus 160 ~~~~--~l-~~lp~~l~~l~~L~~L~Ls~~l---~~lp~~l~~l~~L~~L~Ls~n~-l~~-lp~~l~~l~~L~~L~L~~c 231 (517)
++|. .. ..+|..+..+++|+.|+++++. ...+..+..+++|++|++++|. +.. ....+..+++|+.|++++|
T Consensus 203 ~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 203 SGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp CSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred CCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 7773 33 3455556666777777776543 2445556666777777777764 221 1124566667777777765
No 82
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.73 E-value=4.1e-19 Score=178.62 Aligned_cols=224 Identities=17% Similarity=0.223 Sum_probs=172.9
Q ss_pred CCccEEeccCCCCCccccccCCCCCCccEEEccCCCCCCC-CCC-CCCCCCccEEeeccccCCcccCccccCCCCCCEEe
Q 043008 14 KNLVELNLPYGHKVVQIWEGKKRAFKLKFINLSHSQCHIK-IPD-PSETPNLERIDILNCTNPACVLSSITNFNHLSMLC 91 (517)
Q Consensus 14 ~~L~~L~L~~n~~l~~l~~~~~~l~~L~~L~Ls~~~~l~~-~p~-l~~l~~L~~L~L~~~~~l~~~p~si~~l~~L~~L~ 91 (517)
++++.|++++| .+...+..+..+++|++|+|++|.+... +|. +..+++|++|+|++|......+..++.+++|++|+
T Consensus 70 ~~l~~L~l~~n-~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~ 148 (336)
T 2ast_B 70 QGVIAFRCPRS-FMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN 148 (336)
T ss_dssp TTCSEEECTTC-EECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEE
T ss_pred ccceEEEcCCc-cccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEE
Confidence 78999999999 8888777788899999999999985433 554 78899999999999977667888899999999999
Q ss_pred ccCCcCcc--ccCCCC-CCCCCcEEEEecCCCCCc--cCC---CCC-CCcEEEeeccc--C--cccCCcCCCCCCccEEE
Q 043008 92 FRHCKNLR--HFPNNL-HFVCPIIIDFSYCVNLTE--FPQ---ISG-NIIDLILTETA--I--EEVPSSTECLTNLQYLF 158 (517)
Q Consensus 92 L~~~~~l~--~lp~~~-~l~sL~~L~L~~c~~l~~--~p~---~~~-~L~~L~L~~~~--i--~~lp~~i~~l~~L~~L~ 158 (517)
+++|..+. .++..+ .+++|++|++++|..+.. ++. .+. +|+.|++++|. + ..+|..+..+++|+.|+
T Consensus 149 L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~ 228 (336)
T 2ast_B 149 LSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD 228 (336)
T ss_dssp CTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEE
T ss_pred CCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEe
Confidence 99996554 356555 899999999999955553 333 356 89999999995 4 46777788899999999
Q ss_pred cccCc-CCccccccccCCCCCcEEEcCCCCCcCCc---cCCCCCCCCEEEecCCCCCc-chhhhhcCCCCCEEeccCCCC
Q 043008 159 LCSCK-KLKRVSTSICKFKSLVWLSLNNDLTAIPQ---EIGCLSSLECLNLGGNNFEG-LPASIKQISRLECLDLSYCNS 233 (517)
Q Consensus 159 l~~~~-~l~~lp~~l~~l~~L~~L~Ls~~l~~lp~---~l~~l~~L~~L~Ls~n~l~~-lp~~l~~l~~L~~L~L~~c~~ 233 (517)
+++|. .....+..+..+++|+.|+++++....+. .+..+++|+.|++++| +.. .-..+. .+|+.|++++|+.
T Consensus 229 l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~~~~~l~--~~l~~L~l~~n~l 305 (336)
T 2ast_B 229 LSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLK--EALPHLQINCSHF 305 (336)
T ss_dssp CTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHH--HHSTTSEESCCCS
T ss_pred CCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHHHHHHHH--hhCcceEEecccC
Confidence 99998 55677788999999999999987633333 5788999999999999 442 111222 1244455775443
Q ss_pred CCcCCCCC
Q 043008 234 LQSLPELP 241 (517)
Q Consensus 234 l~~lp~l~ 241 (517)
-...|...
T Consensus 306 ~~~~~~~~ 313 (336)
T 2ast_B 306 TTIARPTI 313 (336)
T ss_dssp CCTTCSSC
T ss_pred ccccCCcc
Confidence 33344433
No 83
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.72 E-value=1.1e-17 Score=166.66 Aligned_cols=194 Identities=19% Similarity=0.131 Sum_probs=158.9
Q ss_pred CCCccEEeccCCCCCc-cccccC--CCCCCccEEEccCCCCCCCCCC-----CCCCCCccEEeeccccCCcccCccccCC
Q 043008 13 PKNLVELNLPYGHKVV-QIWEGK--KRAFKLKFINLSHSQCHIKIPD-----PSETPNLERIDILNCTNPACVLSSITNF 84 (517)
Q Consensus 13 ~~~L~~L~L~~n~~l~-~l~~~~--~~l~~L~~L~Ls~~~~l~~~p~-----l~~l~~L~~L~L~~~~~l~~~p~si~~l 84 (517)
+++|++|++++| .+. ..|..+ ..+++|++|+|++|.+....+. +..+++|++|+|++|......+..++.+
T Consensus 90 ~~~L~~L~l~~n-~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l 168 (310)
T 4glp_A 90 YSRLKELTLEDL-KITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAF 168 (310)
T ss_dssp HSCCCEEEEESC-CCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCC
T ss_pred cCceeEEEeeCC-EeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccC
Confidence 456999999999 776 456666 8899999999999997765552 4579999999999998877777899999
Q ss_pred CCCCEEeccCCcCccc--cC--CCC-CCCCCcEEEEecCCCCCccCC-------CCCCCcEEEeecccCccc-CCcCCCC
Q 043008 85 NHLSMLCFRHCKNLRH--FP--NNL-HFVCPIIIDFSYCVNLTEFPQ-------ISGNIIDLILTETAIEEV-PSSTECL 151 (517)
Q Consensus 85 ~~L~~L~L~~~~~l~~--lp--~~~-~l~sL~~L~L~~c~~l~~~p~-------~~~~L~~L~L~~~~i~~l-p~~i~~l 151 (517)
++|++|+|++|+.... ++ ..+ .+++|++|++++|.. +.++. ...+|++|+|++|.+..+ |..+..+
T Consensus 169 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l-~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~ 247 (310)
T 4glp_A 169 PALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGM-ETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRC 247 (310)
T ss_dssp TTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCC-CCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSC
T ss_pred CCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCC-CchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhc
Confidence 9999999999986542 32 222 789999999999754 54443 247889999999999976 8777776
Q ss_pred ---CCccEEEcccCcCCccccccccCCCCCcEEEcCCC-CCcCCccCCCCCCCCEEEecCCCCCc
Q 043008 152 ---TNLQYLFLCSCKKLKRVSTSICKFKSLVWLSLNND-LTAIPQEIGCLSSLECLNLGGNNFEG 212 (517)
Q Consensus 152 ---~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~Ls~~-l~~lp~~l~~l~~L~~L~Ls~n~l~~ 212 (517)
++|++|++++|.+. .+|..+. ++|+.|++++| +..+|. +..+++|+.|+|++|.++.
T Consensus 248 ~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 248 MWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRAPQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSCCC-TTSCCCCSCEECSSTTTSC
T ss_pred cCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCCch-hhhCCCccEEECcCCCCCC
Confidence 69999999999776 6777764 89999999876 566665 7889999999999998863
No 84
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.72 E-value=8.2e-17 Score=172.93 Aligned_cols=184 Identities=15% Similarity=0.196 Sum_probs=122.3
Q ss_pred CccEEeccCCCCCccccccCCCCCCccEEEccCCCCCCCCCCCCCCCCccEEeeccccCCcccCccccCCCCCCEEeccC
Q 043008 15 NLVELNLPYGHKVVQIWEGKKRAFKLKFINLSHSQCHIKIPDPSETPNLERIDILNCTNPACVLSSITNFNHLSMLCFRH 94 (517)
Q Consensus 15 ~L~~L~L~~n~~l~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~~~~l~~~p~si~~l~~L~~L~L~~ 94 (517)
+|+.|+|++| .+..+|..+ +++|++|+|++|.+ +.+| ..+++|++|+|++|... .+|. +.. +|++|++++
T Consensus 60 ~L~~L~Ls~n-~L~~lp~~l--~~~L~~L~Ls~N~l-~~ip--~~l~~L~~L~Ls~N~l~-~ip~-l~~--~L~~L~Ls~ 129 (571)
T 3cvr_A 60 QFSELQLNRL-NLSSLPDNL--PPQITVLEITQNAL-ISLP--ELPASLEYLDACDNRLS-TLPE-LPA--SLKHLDVDN 129 (571)
T ss_dssp TCSEEECCSS-CCSCCCSCC--CTTCSEEECCSSCC-SCCC--CCCTTCCEEECCSSCCS-CCCC-CCT--TCCEEECCS
T ss_pred CccEEEeCCC-CCCccCHhH--cCCCCEEECcCCCC-cccc--cccCCCCEEEccCCCCC-Ccch-hhc--CCCEEECCC
Confidence 7888888888 787777665 37788888888874 4677 55788888888887544 4666 554 788888888
Q ss_pred CcCccccCCCCCCCCCcEEEEecCCCCCccCCCCCCCcEEEeecccCcccCCcCCCCCCccEEEcccCcCCccccccccC
Q 043008 95 CKNLRHFPNNLHFVCPIIIDFSYCVNLTEFPQISGNIIDLILTETAIEEVPSSTECLTNLQYLFLCSCKKLKRVSTSICK 174 (517)
Q Consensus 95 ~~~l~~lp~~~~l~sL~~L~L~~c~~l~~~p~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~l~~ 174 (517)
|.... +|. .+++|+.|++++|. ++.+|..+.+|+.|+|++|.++.+|. +. ++|+.|++++|.+. .+|. +..
T Consensus 130 N~l~~-lp~--~l~~L~~L~Ls~N~-l~~lp~~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~ 200 (571)
T 3cvr_A 130 NQLTM-LPE--LPALLEYINADNNQ-LTMLPELPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNLLE-SLPA-VPV 200 (571)
T ss_dssp SCCSC-CCC--CCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSCCS-SCCC-CC-
T ss_pred CcCCC-CCC--cCccccEEeCCCCc-cCcCCCcCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCCCC-chhh-HHH
Confidence 76543 666 67778888887754 44577666677777777777777777 54 77777777777544 5555 433
Q ss_pred CCCC-------cEEEcCCC-CCcCCccCCCCCCCCEEEecCCCCCc-chhhhhc
Q 043008 175 FKSL-------VWLSLNND-LTAIPQEIGCLSSLECLNLGGNNFEG-LPASIKQ 219 (517)
Q Consensus 175 l~~L-------~~L~Ls~~-l~~lp~~l~~l~~L~~L~Ls~n~l~~-lp~~l~~ 219 (517)
+| +.|++++| +..+|..+..+++|+.|+|++|.+++ +|..+..
T Consensus 201 --~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~ 252 (571)
T 3cvr_A 201 --RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQ 252 (571)
T ss_dssp ---------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCHHHHHHHHH
T ss_pred --hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHH
Confidence 44 66666443 45556555556666666666666653 4444443
No 85
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.72 E-value=6.8e-17 Score=160.90 Aligned_cols=193 Identities=13% Similarity=0.133 Sum_probs=162.4
Q ss_pred CCCCccEEeccCCCCCccccccCCCCCCccEEEccCCCCCCCCCCCCCCCCccEEeeccccCCcccCccccCCCCCCEEe
Q 043008 12 KPKNLVELNLPYGHKVVQIWEGKKRAFKLKFINLSHSQCHIKIPDPSETPNLERIDILNCTNPACVLSSITNFNHLSMLC 91 (517)
Q Consensus 12 ~~~~L~~L~L~~n~~l~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~~~~l~~~p~si~~l~~L~~L~ 91 (517)
++++|++|+++++ .+..++ ++..+++|++|+|++|.+ ..++.+..+++|++|+|++|. +..++ .+..+++|++|+
T Consensus 39 ~l~~L~~L~l~~~-~i~~l~-~~~~l~~L~~L~L~~n~i-~~~~~~~~l~~L~~L~L~~n~-l~~~~-~~~~l~~L~~L~ 113 (308)
T 1h6u_A 39 DLDGITTLSAFGT-GVTTIE-GVQYLNNLIGLELKDNQI-TDLAPLKNLTKITELELSGNP-LKNVS-AIAGLQSIKTLD 113 (308)
T ss_dssp HHHTCCEEECTTS-CCCCCT-TGGGCTTCCEEECCSSCC-CCCGGGTTCCSCCEEECCSCC-CSCCG-GGTTCTTCCEEE
T ss_pred HcCCcCEEEeeCC-CccCch-hhhccCCCCEEEccCCcC-CCChhHccCCCCCEEEccCCc-CCCch-hhcCCCCCCEEE
Confidence 5789999999999 999886 688999999999999984 555569999999999999986 44454 699999999999
Q ss_pred ccCCcCccccCCCC-CCCCCcEEEEecCCCCCccCC--CCCCCcEEEeecccCcccCCcCCCCCCccEEEcccCcCCccc
Q 043008 92 FRHCKNLRHFPNNL-HFVCPIIIDFSYCVNLTEFPQ--ISGNIIDLILTETAIEEVPSSTECLTNLQYLFLCSCKKLKRV 168 (517)
Q Consensus 92 L~~~~~l~~lp~~~-~l~sL~~L~L~~c~~l~~~p~--~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~l 168 (517)
+++|... .++. + .+++|+.|++++|. +..++. .+.+|+.|++++|.+..++. +..+++|+.|++++|.+.+..
T Consensus 114 l~~n~l~-~~~~-l~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~ 189 (308)
T 1h6u_A 114 LTSTQIT-DVTP-LAGLSNLQVLYLDLNQ-ITNISPLAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKISDIS 189 (308)
T ss_dssp CTTSCCC-CCGG-GTTCTTCCEEECCSSC-CCCCGGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG
T ss_pred CCCCCCC-Cchh-hcCCCCCCEEECCCCc-cCcCccccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCccCcCh
Confidence 9999754 4554 5 99999999999975 444443 35678999999999998887 899999999999999776543
Q ss_pred cccccCCCCCcEEEcCCC-CCcCCccCCCCCCCCEEEecCCCCCcchhh
Q 043008 169 STSICKFKSLVWLSLNND-LTAIPQEIGCLSSLECLNLGGNNFEGLPAS 216 (517)
Q Consensus 169 p~~l~~l~~L~~L~Ls~~-l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~ 216 (517)
+ +..+++|+.|++++| +..++ .+..+++|+.|+|++|.++..|..
T Consensus 190 ~--l~~l~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~l~~N~i~~~~~~ 235 (308)
T 1h6u_A 190 P--LASLPNLIEVHLKNNQISDVS-PLANTSNLFIVTLTNQTITNQPVF 235 (308)
T ss_dssp G--GGGCTTCCEEECTTSCCCBCG-GGTTCTTCCEEEEEEEEEECCCEE
T ss_pred h--hcCCCCCCEEEccCCccCccc-cccCCCCCCEEEccCCeeecCCee
Confidence 3 889999999999876 45666 489999999999999999887743
No 86
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.71 E-value=2.4e-16 Score=152.07 Aligned_cols=175 Identities=15% Similarity=0.133 Sum_probs=123.5
Q ss_pred CCccEEeccCCCCCccccccCCCCCCccEEEccCCCCCCCCC-CCCCCCCccEEeeccccCCcccCccccCCCCCCEEec
Q 043008 14 KNLVELNLPYGHKVVQIWEGKKRAFKLKFINLSHSQCHIKIP-DPSETPNLERIDILNCTNPACVLSSITNFNHLSMLCF 92 (517)
Q Consensus 14 ~~L~~L~L~~n~~l~~l~~~~~~l~~L~~L~Ls~~~~l~~~p-~l~~l~~L~~L~L~~~~~l~~~p~si~~l~~L~~L~L 92 (517)
+..++++++++ .++.+|.++. ++|+.|+|++|.+....+ .+.++++|++|+|++|......+..+..+++|++|+|
T Consensus 14 ~~~~~l~~~~~-~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 14 EGKKEVDCQGK-SLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGGTEEECTTC-CCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCeEEecCCC-CccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence 45778899988 8888887765 688999999988665555 3888899999999988776666667888889999999
Q ss_pred cCCcCccccCCCC-CCCCCcEEEEecCCCCCccCCCCCCCcEEEeecccCcccCCc-CCCCCCccEEEcccCcCCccccc
Q 043008 93 RHCKNLRHFPNNL-HFVCPIIIDFSYCVNLTEFPQISGNIIDLILTETAIEEVPSS-TECLTNLQYLFLCSCKKLKRVST 170 (517)
Q Consensus 93 ~~~~~l~~lp~~~-~l~sL~~L~L~~c~~l~~~p~~~~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~l~~~~~l~~lp~ 170 (517)
++|......+..+ .+++|++|++++| .++.+|.. +..+++|+.|++++|.+.+..+.
T Consensus 91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N---------------------~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 149 (251)
T 3m19_A 91 ANNQLASLPLGVFDHLTQLDKLYLGGN---------------------QLKSLPSGVFDRLTKLKELRLNTNQLQSIPAG 149 (251)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSS---------------------CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred CCCcccccChhHhcccCCCCEEEcCCC---------------------cCCCcChhHhccCCcccEEECcCCcCCccCHH
Confidence 8887654444444 6777777777664 33333333 35566666666666655544444
Q ss_pred cccCCCCCcEEEcCCC-CCcCCc-cCCCCCCCCEEEecCCCCCc
Q 043008 171 SICKFKSLVWLSLNND-LTAIPQ-EIGCLSSLECLNLGGNNFEG 212 (517)
Q Consensus 171 ~l~~l~~L~~L~Ls~~-l~~lp~-~l~~l~~L~~L~Ls~n~l~~ 212 (517)
.+..+++|+.|++++| +..+|. .+..+++|+.|+|++|.+..
T Consensus 150 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 150 AFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCT
T ss_pred HcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeC
Confidence 5666666666666554 344444 57778889999999988764
No 87
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.70 E-value=3.3e-16 Score=158.73 Aligned_cols=219 Identities=21% Similarity=0.180 Sum_probs=146.9
Q ss_pred cEEeccCCCCCccccccCCCCCCccEEEccCCCCCCCCC--CCCCCCCccEEeeccccCCcccCc-cccCCCCCCEEecc
Q 043008 17 VELNLPYGHKVVQIWEGKKRAFKLKFINLSHSQCHIKIP--DPSETPNLERIDILNCTNPACVLS-SITNFNHLSMLCFR 93 (517)
Q Consensus 17 ~~L~L~~n~~l~~l~~~~~~l~~L~~L~Ls~~~~l~~~p--~l~~l~~L~~L~L~~~~~l~~~p~-si~~l~~L~~L~L~ 93 (517)
++++.+++ +++++|.++ .+++++|+|++|+ ++.+| .|.++++|++|+|++|.....+|. .|.++++|..+.+.
T Consensus 12 ~~v~C~~~-~Lt~iP~~l--~~~l~~L~Ls~N~-i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 12 RVFLCQES-KVTEIPSDL--PRNAIELRFVLTK-LRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp TEEEEEST-TCCSCCTTC--CTTCSEEEEESCC-CSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred CEEEecCC-CCCccCcCc--CCCCCEEEccCCc-CCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 45666777 788887765 3578888888887 44555 277888888888888876665554 46677777664443
Q ss_pred CCcCcccc-CCCC-CCCCCcEEEEecCCCCCccCCCCCCCcEEEeecccCcccCCcCCCCCCccEEEcccCcCCccccc-
Q 043008 94 HCKNLRHF-PNNL-HFVCPIIIDFSYCVNLTEFPQISGNIIDLILTETAIEEVPSSTECLTNLQYLFLCSCKKLKRVST- 170 (517)
Q Consensus 94 ~~~~l~~l-p~~~-~l~sL~~L~L~~c~~l~~~p~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~- 170 (517)
++..+..+ |..+ .+++|++|++++|. +..+|.. .+....++..|++.++..+..++.
T Consensus 88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~-l~~~~~~-------------------~~~~~~~l~~l~l~~~~~i~~l~~~ 147 (350)
T 4ay9_X 88 KANNLLYINPEAFQNLPNLQYLLISNTG-IKHLPDV-------------------HKIHSLQKVLLDIQDNINIHTIERN 147 (350)
T ss_dssp EETTCCEECTTSBCCCTTCCEEEEEEEC-CSSCCCC-------------------TTCCBSSCEEEEEESCTTCCEECTT
T ss_pred cCCcccccCchhhhhccccccccccccc-cccCCch-------------------hhcccchhhhhhhcccccccccccc
Confidence 33334444 3444 67777777777643 2333221 123344555555555444444432
Q ss_pred cccCC-CCCcEEEcCCC-CCcCCccCCCCCCCCEEEecC-CCCCcchh-hhhcCCCCCEEeccCCCCCCcCCC-CCCCcc
Q 043008 171 SICKF-KSLVWLSLNND-LTAIPQEIGCLSSLECLNLGG-NNFEGLPA-SIKQISRLECLDLSYCNSLQSLPE-LPLHLE 245 (517)
Q Consensus 171 ~l~~l-~~L~~L~Ls~~-l~~lp~~l~~l~~L~~L~Ls~-n~l~~lp~-~l~~l~~L~~L~L~~c~~l~~lp~-l~~~L~ 245 (517)
.+..+ ..++.|++++| +..+|..+....+|++|++++ |.++.+|. .+..+++|+.|+|++ +.++.+|. .+.+|+
T Consensus 148 ~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~-N~l~~lp~~~~~~L~ 226 (350)
T 4ay9_X 148 SFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISR-TRIHSLPSYGLENLK 226 (350)
T ss_dssp SSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTT-SCCCCCCSSSCTTCC
T ss_pred chhhcchhhhhhccccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCC-CCcCccChhhhccch
Confidence 33443 34666777554 567777766778899999975 78889985 578999999999998 57889886 578999
Q ss_pred EEecccccCcCcCCC
Q 043008 246 VLLATNCKRLQSLPE 260 (517)
Q Consensus 246 ~L~~~~c~~l~~l~~ 260 (517)
.|.+.++..++.++.
T Consensus 227 ~L~~l~~~~l~~lP~ 241 (350)
T 4ay9_X 227 KLRARSTYNLKKLPT 241 (350)
T ss_dssp EEECTTCTTCCCCCC
T ss_pred HhhhccCCCcCcCCC
Confidence 999999998888764
No 88
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.68 E-value=1.6e-18 Score=181.99 Aligned_cols=268 Identities=17% Similarity=0.151 Sum_probs=123.8
Q ss_pred CCCCccEEeccCCCCCccc-ccc-CCCCC----CccEEEccCCCCCC----CCC-CCCCCCCccEEeeccccCCcccCcc
Q 043008 12 KPKNLVELNLPYGHKVVQI-WEG-KKRAF----KLKFINLSHSQCHI----KIP-DPSETPNLERIDILNCTNPACVLSS 80 (517)
Q Consensus 12 ~~~~L~~L~L~~n~~l~~l-~~~-~~~l~----~L~~L~Ls~~~~l~----~~p-~l~~l~~L~~L~L~~~~~l~~~p~s 80 (517)
.+++|++|+|++| .+... +.. ...++ +|++|+|++|.+.. .+| .+..+++|++|+|++|......+..
T Consensus 54 ~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~ 132 (461)
T 1z7x_W 54 VNPALAELNLRSN-ELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQL 132 (461)
T ss_dssp TCTTCCEEECTTC-CCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHH
T ss_pred hCCCcCEEeCCCC-cCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHH
Confidence 4566777777766 55431 111 11222 56667776665432 223 2566666666666666432221211
Q ss_pred c-----cCCCCCCEEeccCCcCccc----cCCCC-CCCCCcEEEEecCC-----------------------------CC
Q 043008 81 I-----TNFNHLSMLCFRHCKNLRH----FPNNL-HFVCPIIIDFSYCV-----------------------------NL 121 (517)
Q Consensus 81 i-----~~l~~L~~L~L~~~~~l~~----lp~~~-~l~sL~~L~L~~c~-----------------------------~l 121 (517)
+ ...++|++|++++|..... ++..+ .+++|+.|++++|. ..
T Consensus 133 l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~ 212 (461)
T 1z7x_W 133 LCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVT 212 (461)
T ss_dssp HHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCB
T ss_pred HHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCc
Confidence 1 1234555566555543331 12222 34455555555543 22
Q ss_pred Cc----cCCC---CCCCcEEEeecccCccc------CCcCCCCCCccEEEcccCcCCcc----ccccccCCCCCcEEEcC
Q 043008 122 TE----FPQI---SGNIIDLILTETAIEEV------PSSTECLTNLQYLFLCSCKKLKR----VSTSICKFKSLVWLSLN 184 (517)
Q Consensus 122 ~~----~p~~---~~~L~~L~L~~~~i~~l------p~~i~~l~~L~~L~l~~~~~l~~----lp~~l~~l~~L~~L~Ls 184 (517)
.. ++.. ..+|+.|++++|.+... +..+..+++|+.|++++|.+... ++..+..+++|+.|+++
T Consensus 213 ~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls 292 (461)
T 1z7x_W 213 SDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLA 292 (461)
T ss_dssp TTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECT
T ss_pred HHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECC
Confidence 11 1211 23445555555544421 11122345555555555544332 34444555556666665
Q ss_pred CCCC------cCCccC-CCCCCCCEEEecCCCCCc-----chhhhhcCCCCCEEeccCCCCCCcCC-----C----CCCC
Q 043008 185 NDLT------AIPQEI-GCLSSLECLNLGGNNFEG-----LPASIKQISRLECLDLSYCNSLQSLP-----E----LPLH 243 (517)
Q Consensus 185 ~~l~------~lp~~l-~~l~~L~~L~Ls~n~l~~-----lp~~l~~l~~L~~L~L~~c~~l~~lp-----~----l~~~ 243 (517)
+|.- .+...+ ...++|++|+|++|.++. ++..+..+++|+.|+|++| .++... + ..++
T Consensus 293 ~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~ 371 (461)
T 1z7x_W 293 GNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNN-RLEDAGVRELCQGLGQPGSV 371 (461)
T ss_dssp TCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSS-BCHHHHHHHHHHHHTSTTCC
T ss_pred CCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCC-ccccccHHHHHHHHcCCCCc
Confidence 4421 111111 122466666666666553 3455566666666666664 333211 1 1236
Q ss_pred ccEEecccccCcCc--CCCCCchhhhcchhhHHhhhcCCCC
Q 043008 244 LEVLLATNCKRLQS--LPEIPSCLEELDASVLEKLSKHSFG 282 (517)
Q Consensus 244 L~~L~~~~c~~l~~--l~~~~~~L~~L~~l~~~~Ls~n~~~ 282 (517)
|+.|++.+|. +.. ....+..+..++.++.++|++|+++
T Consensus 372 L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~ 411 (461)
T 1z7x_W 372 LRVLWLADCD-VSDSSCSSLAATLLANHSLRELDLSNNCLG 411 (461)
T ss_dssp CCEEECTTSC-CCHHHHHHHHHHHHHCCCCCEEECCSSSCC
T ss_pred eEEEECCCCC-CChhhHHHHHHHHHhCCCccEEECCCCCCC
Confidence 6666666552 110 0023444555555555666666554
No 89
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.68 E-value=2e-18 Score=177.43 Aligned_cols=237 Identities=11% Similarity=0.047 Sum_probs=170.7
Q ss_pred CCccEEeccCCCCCccccccCCCCCCccEEEccCCCCCCCC----C-CCCCCCCccEEeeccccCC---cccCccc----
Q 043008 14 KNLVELNLPYGHKVVQIWEGKKRAFKLKFINLSHSQCHIKI----P-DPSETPNLERIDILNCTNP---ACVLSSI---- 81 (517)
Q Consensus 14 ~~L~~L~L~~n~~l~~l~~~~~~l~~L~~L~Ls~~~~l~~~----p-~l~~l~~L~~L~L~~~~~l---~~~p~si---- 81 (517)
..|+...+... .+..++..+..+++|+.|+|++|.+.... + .+..+++|++|+|++|... ..+|..+
T Consensus 9 ~~L~~~~l~~~-~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~ 87 (386)
T 2ca6_A 9 KSLKLDAITTE-DEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLL 87 (386)
T ss_dssp CCCEESSCCSH-HHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHH
T ss_pred cccccCCCCHH-HHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHH
Confidence 44554455555 55667777888999999999999865432 2 3778999999999997322 2445444
Q ss_pred ---cCCCCCCEEeccCCcCcc----ccCCCC-CCCCCcEEEEecCCCCC----ccCCCC------------CCCcEEEee
Q 043008 82 ---TNFNHLSMLCFRHCKNLR----HFPNNL-HFVCPIIIDFSYCVNLT----EFPQIS------------GNIIDLILT 137 (517)
Q Consensus 82 ---~~l~~L~~L~L~~~~~l~----~lp~~~-~l~sL~~L~L~~c~~l~----~~p~~~------------~~L~~L~L~ 137 (517)
..+++|++|+|++|.... .+|..+ .+++|++|+|++|.... .++..+ .+|+.|+++
T Consensus 88 ~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~ 167 (386)
T 2ca6_A 88 QALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICG 167 (386)
T ss_dssp HHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECC
T ss_pred HHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECC
Confidence 789999999999998766 366666 88999999999987532 222222 688999999
Q ss_pred cccCc--ccC---CcCCCCCCccEEEcccCcCCc-----cccccccCCCCCcEEEcCCCC------CcCCccCCCCCCCC
Q 043008 138 ETAIE--EVP---SSTECLTNLQYLFLCSCKKLK-----RVSTSICKFKSLVWLSLNNDL------TAIPQEIGCLSSLE 201 (517)
Q Consensus 138 ~~~i~--~lp---~~i~~l~~L~~L~l~~~~~l~-----~lp~~l~~l~~L~~L~Ls~~l------~~lp~~l~~l~~L~ 201 (517)
+|.+. .+| ..+..+++|+.|++++|.+.. ..|..+..+++|+.|++++|. ..+|..+..+++|+
T Consensus 168 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~ 247 (386)
T 2ca6_A 168 RNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLR 247 (386)
T ss_dssp SSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCC
T ss_pred CCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcC
Confidence 99886 444 456678899999999987652 244477888889999987753 44677788888899
Q ss_pred EEEecCCCCCc-----chhhhhc--CCCCCEEeccCCCCCCc-----CCCC----CCCccEEecccc
Q 043008 202 CLNLGGNNFEG-----LPASIKQ--ISRLECLDLSYCNSLQS-----LPEL----PLHLEVLLATNC 252 (517)
Q Consensus 202 ~L~Ls~n~l~~-----lp~~l~~--l~~L~~L~L~~c~~l~~-----lp~l----~~~L~~L~~~~c 252 (517)
.|+|++|.++. +|..+.. +++|+.|+|++|+ ++. +|.. .++|+.|++.++
T Consensus 248 ~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~-i~~~g~~~l~~~l~~~l~~L~~L~l~~N 313 (386)
T 2ca6_A 248 ELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNE-IELDAVRTLKTVIDEKMPDLLFLELNGN 313 (386)
T ss_dssp EEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSC-CBHHHHHHHHHHHHHHCTTCCEEECTTS
T ss_pred EEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCc-CCHHHHHHHHHHHHhcCCCceEEEccCC
Confidence 99999998875 4666644 8889999998754 443 5542 255666665553
No 90
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.68 E-value=1.5e-18 Score=182.11 Aligned_cols=268 Identities=16% Similarity=0.126 Sum_probs=180.7
Q ss_pred CCCCccEEeccCCCCCc-----cccccCCCCCCccEEEccCCCCCCCCC-CC-CCCC----CccEEeeccccCCc----c
Q 043008 12 KPKNLVELNLPYGHKVV-----QIWEGKKRAFKLKFINLSHSQCHIKIP-DP-SETP----NLERIDILNCTNPA----C 76 (517)
Q Consensus 12 ~~~~L~~L~L~~n~~l~-----~l~~~~~~l~~L~~L~Ls~~~~l~~~p-~l-~~l~----~L~~L~L~~~~~l~----~ 76 (517)
.+++|++|+|++| .+. .++..+..+++|++|+|++|.+....+ .+ ..++ +|++|+|++|.... .
T Consensus 26 ~~~~L~~L~L~~~-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~ 104 (461)
T 1z7x_W 26 LLQQCQVVRLDDC-GLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGV 104 (461)
T ss_dssp HHTTCSEEEEESS-CCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHH
T ss_pred hcCCccEEEccCC-CCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHH
Confidence 4678888888888 776 446667778888888888887433222 11 2233 68899998886553 4
Q ss_pred cCccccCCCCCCEEeccCCcCccccCCCC------CCCCCcEEEEecCCCCCc----cCCC---CCCCcEEEeecccCcc
Q 043008 77 VLSSITNFNHLSMLCFRHCKNLRHFPNNL------HFVCPIIIDFSYCVNLTE----FPQI---SGNIIDLILTETAIEE 143 (517)
Q Consensus 77 ~p~si~~l~~L~~L~L~~~~~l~~lp~~~------~l~sL~~L~L~~c~~l~~----~p~~---~~~L~~L~L~~~~i~~ 143 (517)
++..+..+++|++|++++|......+..+ ..++|++|++++|..... ++.. ..+|+.|++++|.+..
T Consensus 105 l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~ 184 (461)
T 1z7x_W 105 LSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINE 184 (461)
T ss_dssp HHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHH
T ss_pred HHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcch
Confidence 57788888899999998887543322222 356789999988754432 2222 3678899999988873
Q ss_pred c-CCcCC-----CCCCccEEEcccCcCCcc----ccccccCCCCCcEEEcCCCC-Cc-----C-CccCCCCCCCCEEEec
Q 043008 144 V-PSSTE-----CLTNLQYLFLCSCKKLKR----VSTSICKFKSLVWLSLNNDL-TA-----I-PQEIGCLSSLECLNLG 206 (517)
Q Consensus 144 l-p~~i~-----~l~~L~~L~l~~~~~l~~----lp~~l~~l~~L~~L~Ls~~l-~~-----l-p~~l~~l~~L~~L~Ls 206 (517)
. +..+. ..++|+.|++++|.+... ++..+..+++|++|+++++. .. + +.....+++|++|+++
T Consensus 185 ~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~ 264 (461)
T 1z7x_W 185 AGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIW 264 (461)
T ss_dssp HHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECT
T ss_pred HHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECc
Confidence 2 11121 356899999999877653 57777888999999998763 11 2 2223468899999999
Q ss_pred CCCCCc-----chhhhhcCCCCCEEeccCCCCCCc-----CC----CCCCCccEEecccccCcCcC--CCCCchhhhcch
Q 043008 207 GNNFEG-----LPASIKQISRLECLDLSYCNSLQS-----LP----ELPLHLEVLLATNCKRLQSL--PEIPSCLEELDA 270 (517)
Q Consensus 207 ~n~l~~-----lp~~l~~l~~L~~L~L~~c~~l~~-----lp----~l~~~L~~L~~~~c~~l~~l--~~~~~~L~~L~~ 270 (517)
+|+++. ++..+..+++|+.|+|++|+ +.. +. ...++|+.|++.+|. +... ...+..+..++.
T Consensus 265 ~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~ 342 (461)
T 1z7x_W 265 ECGITAKGCGDLCRVLRAKESLKELSLAGNE-LGDEGARLLCETLLEPGCQLESLWVKSCS-FTAACCSHFSSVLAQNRF 342 (461)
T ss_dssp TSCCCHHHHHHHHHHHHHCTTCCEEECTTCC-CHHHHHHHHHHHHTSTTCCCCEEECTTSC-CBGGGHHHHHHHHHHCSS
T ss_pred CCCCCHHHHHHHHHHHhhCCCcceEECCCCC-CchHHHHHHHHHhccCCccceeeEcCCCC-CchHHHHHHHHHHhhCCC
Confidence 999986 78888889999999999864 432 11 123588999888875 2211 012344555566
Q ss_pred hhHHhhhcCCCC
Q 043008 271 SVLEKLSKHSFG 282 (517)
Q Consensus 271 l~~~~Ls~n~~~ 282 (517)
++.++|++|.++
T Consensus 343 L~~L~Ls~n~i~ 354 (461)
T 1z7x_W 343 LLELQISNNRLE 354 (461)
T ss_dssp CCEEECCSSBCH
T ss_pred ccEEEccCCccc
Confidence 666666666554
No 91
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.67 E-value=1.8e-15 Score=145.83 Aligned_cols=163 Identities=17% Similarity=0.165 Sum_probs=117.1
Q ss_pred CCCCCCCCCCCCCCccEEeccCCCCCcccc-ccCCCCCCccEEEccCCCCCCCCCC-CCCCCCccEEeeccccCCcccCc
Q 043008 2 YPLRTLPSNFKPKNLVELNLPYGHKVVQIW-EGKKRAFKLKFINLSHSQCHIKIPD-PSETPNLERIDILNCTNPACVLS 79 (517)
Q Consensus 2 ~pl~~lP~~f~~~~L~~L~L~~n~~l~~l~-~~~~~l~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~~~~l~~~p~ 79 (517)
..++++|..+ +++|+.|+|++| .+..++ ..+..+++|++|+|++|.+....|. +..+++|++|+|++|......+.
T Consensus 24 ~~l~~~p~~~-~~~l~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 101 (251)
T 3m19_A 24 KSLDSVPSGI-PADTEKLDLQST-GLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLG 101 (251)
T ss_dssp CCCSSCCSCC-CTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTT
T ss_pred CCccccCCCC-CCCCCEEEccCC-CcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChh
Confidence 3577888877 479999999999 898874 5689999999999999986665554 89999999999999977666667
Q ss_pred cccCCCCCCEEeccCCcCccccCCCC-CCCCCcEEEEecCCCCCccCCCCCCCcEEEeecccCcccCCcCCCCCCccEEE
Q 043008 80 SITNFNHLSMLCFRHCKNLRHFPNNL-HFVCPIIIDFSYCVNLTEFPQISGNIIDLILTETAIEEVPSSTECLTNLQYLF 158 (517)
Q Consensus 80 si~~l~~L~~L~L~~~~~l~~lp~~~-~l~sL~~L~L~~c~~l~~~p~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~ 158 (517)
.++.+++|++|+|++|......+..+ .+++|+.|++++|. ++.+|. ..+..+++|+.|+
T Consensus 102 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~-------------------~~~~~l~~L~~L~ 161 (251)
T 3m19_A 102 VFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQ-LQSIPA-------------------GAFDKLTNLQTLS 161 (251)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCT-------------------TTTTTCTTCCEEE
T ss_pred HhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCc-CCccCH-------------------HHcCcCcCCCEEE
Confidence 78999999999999996654434334 78888888887753 333332 1344455555555
Q ss_pred cccCcCCccccccccCCCCCcEEEcCCC
Q 043008 159 LCSCKKLKRVSTSICKFKSLVWLSLNND 186 (517)
Q Consensus 159 l~~~~~l~~lp~~l~~l~~L~~L~Ls~~ 186 (517)
+++|.+.+..+..+..+++|+.|++++|
T Consensus 162 L~~N~l~~~~~~~~~~l~~L~~L~l~~N 189 (251)
T 3m19_A 162 LSTNQLQSVPHGAFDRLGKLQTITLFGN 189 (251)
T ss_dssp CCSSCCSCCCTTTTTTCTTCCEEECCSC
T ss_pred CCCCcCCccCHHHHhCCCCCCEEEeeCC
Confidence 5555444444444555555555555443
No 92
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.64 E-value=3e-16 Score=145.65 Aligned_cols=147 Identities=17% Similarity=0.207 Sum_probs=89.7
Q ss_pred CCCCccEEeccCCCCCccccccCCCCCCccEEEccCCCCCCCCCCCCCCCCccEEeeccccCCcccCccccCCCCCCEEe
Q 043008 12 KPKNLVELNLPYGHKVVQIWEGKKRAFKLKFINLSHSQCHIKIPDPSETPNLERIDILNCTNPACVLSSITNFNHLSMLC 91 (517)
Q Consensus 12 ~~~~L~~L~L~~n~~l~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~~~~l~~~p~si~~l~~L~~L~ 91 (517)
.+++|+.|++++| .+..++ ++..+++|++|++++|. ...++.+..+++|++|++++|......+..++.+++|++|+
T Consensus 42 ~l~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~l~~n~-~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 118 (197)
T 4ezg_A 42 QMNSLTYITLANI-NVTDLT-GIEYAHNIKDLTINNIH-ATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118 (197)
T ss_dssp HHHTCCEEEEESS-CCSCCT-TGGGCTTCSEEEEESCC-CSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred hcCCccEEeccCC-CccChH-HHhcCCCCCEEEccCCC-CCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence 4556777777777 777666 56677777777777774 45555666777777777777765555666677777777777
Q ss_pred ccCCcCccccCCCC-CCCCCcEEEEecCCCCCccCC--CCCCCcEEEeecccCcccCCcCCCCCCccEEEcccC
Q 043008 92 FRHCKNLRHFPNNL-HFVCPIIIDFSYCVNLTEFPQ--ISGNIIDLILTETAIEEVPSSTECLTNLQYLFLCSC 162 (517)
Q Consensus 92 L~~~~~l~~lp~~~-~l~sL~~L~L~~c~~l~~~p~--~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~~ 162 (517)
+++|......|..+ .+++|+.|++++|..++.+|. .+.+|+.|++++|.+..++ .+..+++|+.|++++|
T Consensus 119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQ 191 (197)
T ss_dssp CCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC
T ss_pred ecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeCc
Confidence 77776655555545 666777777766654444442 1233445555555554444 3444444555555444
No 93
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.64 E-value=9.5e-17 Score=158.55 Aligned_cols=189 Identities=18% Similarity=0.208 Sum_probs=127.6
Q ss_pred CccEEeccCCCCCccccccCCCCCCccEEEccCCCCCCCCCCCCCCCCccEEeeccccCCcccCccccCCCCCCEEeccC
Q 043008 15 NLVELNLPYGHKVVQIWEGKKRAFKLKFINLSHSQCHIKIPDPSETPNLERIDILNCTNPACVLSSITNFNHLSMLCFRH 94 (517)
Q Consensus 15 ~L~~L~L~~n~~l~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~~~~l~~~p~si~~l~~L~~L~L~~ 94 (517)
++..+.+..+ .+..+ .....+++|+.|++++|. +..++.+..+++|++|+|++|... .++. +..+++|++|++++
T Consensus 25 ~~~~~~l~~~-~~~~~-~~~~~l~~L~~L~l~~~~-i~~~~~~~~l~~L~~L~L~~n~l~-~~~~-l~~l~~L~~L~l~~ 99 (291)
T 1h6t_A 25 ETIKDNLKKK-SVTDA-VTQNELNSIDQIIANNSD-IKSVQGIQYLPNVTKLFLNGNKLT-DIKP-LANLKNLGWLFLDE 99 (291)
T ss_dssp HHHHHHTTCS-CTTSE-ECHHHHHTCCEEECTTSC-CCCCTTGGGCTTCCEEECCSSCCC-CCGG-GTTCTTCCEEECCS
T ss_pred HHHHHHhcCC-Ccccc-cchhhcCcccEEEccCCC-cccChhHhcCCCCCEEEccCCccC-CCcc-cccCCCCCEEECCC
Confidence 3444455555 45443 223467788888888886 456677778888888888887543 3444 77888888888888
Q ss_pred CcCccccCCCC-CCCCCcEEEEecCCCCCccCCCCCCCcEEEeecccCcccCCcCCCCCCccEEEcccCcCCcccccccc
Q 043008 95 CKNLRHFPNNL-HFVCPIIIDFSYCVNLTEFPQISGNIIDLILTETAIEEVPSSTECLTNLQYLFLCSCKKLKRVSTSIC 173 (517)
Q Consensus 95 ~~~l~~lp~~~-~l~sL~~L~L~~c~~l~~~p~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~l~ 173 (517)
|... .+|. + .+++|+.|++++| .+..++ .+..+++|+.|++++|.+.+. ..+.
T Consensus 100 n~l~-~~~~-l~~l~~L~~L~L~~n---------------------~i~~~~-~l~~l~~L~~L~l~~n~l~~~--~~l~ 153 (291)
T 1h6t_A 100 NKVK-DLSS-LKDLKKLKSLSLEHN---------------------GISDIN-GLVHLPQLESLYLGNNKITDI--TVLS 153 (291)
T ss_dssp SCCC-CGGG-GTTCTTCCEEECTTS---------------------CCCCCG-GGGGCTTCCEEECCSSCCCCC--GGGG
T ss_pred CcCC-CChh-hccCCCCCEEECCCC---------------------cCCCCh-hhcCCCCCCEEEccCCcCCcc--hhhc
Confidence 7543 3443 3 6666666666654 333332 355666777777777755443 4566
Q ss_pred CCCCCcEEEcCCC-CCcCCccCCCCCCCCEEEecCCCCCcchhhhhcCCCCCEEeccCCCCCCcC
Q 043008 174 KFKSLVWLSLNND-LTAIPQEIGCLSSLECLNLGGNNFEGLPASIKQISRLECLDLSYCNSLQSL 237 (517)
Q Consensus 174 ~l~~L~~L~Ls~~-l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~c~~l~~l 237 (517)
.+++|+.|++++| +..++. +..+++|+.|+|++|.++.+|. +..+++|+.|++++| .+...
T Consensus 154 ~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i~~l~~-l~~l~~L~~L~l~~n-~i~~~ 215 (291)
T 1h6t_A 154 RLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLRA-LAGLKNLDVLELFSQ-ECLNK 215 (291)
T ss_dssp GCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCGG-GTTCTTCSEEEEEEE-EEECC
T ss_pred cCCCCCEEEccCCccccchh-hcCCCccCEEECCCCcCCCChh-hccCCCCCEEECcCC-cccCC
Confidence 7777777777654 345544 7888999999999999999874 889999999999985 44433
No 94
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.64 E-value=6.5e-18 Score=172.12 Aligned_cols=213 Identities=13% Similarity=0.092 Sum_probs=104.9
Q ss_pred EeccCCCCCccc-cccCCCCCCccEEEccCCCCCCCCC----C-CCCCC-CccEEeeccccCCcccCccccCC-----CC
Q 043008 19 LNLPYGHKVVQI-WEGKKRAFKLKFINLSHSQCHIKIP----D-PSETP-NLERIDILNCTNPACVLSSITNF-----NH 86 (517)
Q Consensus 19 L~L~~n~~l~~l-~~~~~~l~~L~~L~Ls~~~~l~~~p----~-l~~l~-~L~~L~L~~~~~l~~~p~si~~l-----~~ 86 (517)
+++++| .+... |..+....+|++|||++|.+....+ . +..++ +|++|+|++|......+..+..+ ++
T Consensus 3 ~~ls~n-~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 3 YKLTLH-PGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EECCCC-TTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred cccccc-cchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 345555 44432 3333334446666666665322222 1 34455 56666666654444334444333 55
Q ss_pred CCEEeccCCcCccccCCCC-----CC-CCCcEEEEecCCCCCccCCC--------CCCCcEEEeecccCc-----ccCCc
Q 043008 87 LSMLCFRHCKNLRHFPNNL-----HF-VCPIIIDFSYCVNLTEFPQI--------SGNIIDLILTETAIE-----EVPSS 147 (517)
Q Consensus 87 L~~L~L~~~~~l~~lp~~~-----~l-~sL~~L~L~~c~~l~~~p~~--------~~~L~~L~L~~~~i~-----~lp~~ 147 (517)
|++|+|++|......+..+ .+ ++|++|++++|......+.. ..+|++|+|++|.+. .++..
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 6666666655433322211 22 55666666655422111111 135566666666555 33334
Q ss_pred CCCCC-CccEEEcccCcCCcccccc----ccCC-CCCcEEEcCCCC-Cc-----CCccCCC-CCCCCEEEecCCCCCcch
Q 043008 148 TECLT-NLQYLFLCSCKKLKRVSTS----ICKF-KSLVWLSLNNDL-TA-----IPQEIGC-LSSLECLNLGGNNFEGLP 214 (517)
Q Consensus 148 i~~l~-~L~~L~l~~~~~l~~lp~~----l~~l-~~L~~L~Ls~~l-~~-----lp~~l~~-l~~L~~L~Ls~n~l~~lp 214 (517)
+..++ +|++|++++|.+....+.. +... ++|+.|++++|. .. ++..+.. .++|++|+|++|.++..+
T Consensus 162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~ 241 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPS 241 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCC
T ss_pred HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHH
Confidence 44444 6677777766554444332 2333 466666665542 22 3444443 346777777777666432
Q ss_pred -----hhhhcCCCCCEEeccCCC
Q 043008 215 -----ASIKQISRLECLDLSYCN 232 (517)
Q Consensus 215 -----~~l~~l~~L~~L~L~~c~ 232 (517)
..+..+++|+.|+|++|.
T Consensus 242 ~~~l~~~~~~l~~L~~L~L~~n~ 264 (362)
T 3goz_A 242 LENLKLLKDSLKHLQTVYLDYDI 264 (362)
T ss_dssp HHHHHHTTTTTTTCSEEEEEHHH
T ss_pred HHHHHHHHhcCCCccEEEeccCC
Confidence 234556667777776643
No 95
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.63 E-value=3.7e-15 Score=160.06 Aligned_cols=175 Identities=13% Similarity=0.221 Sum_probs=141.7
Q ss_pred CCCCCCCCCCCCCCccEEeccCCCCCccccccCCCCCCccEEEccCCCCCCCCCCCCCCCCccEEeeccccCCcccCccc
Q 043008 2 YPLRTLPSNFKPKNLVELNLPYGHKVVQIWEGKKRAFKLKFINLSHSQCHIKIPDPSETPNLERIDILNCTNPACVLSSI 81 (517)
Q Consensus 2 ~pl~~lP~~f~~~~L~~L~L~~n~~l~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~~~~l~~~p~si 81 (517)
..+..+|..+ +++|++|+|++| .++.+| ..+++|++|+|++|.+. .+|.+.. +|++|+|++|... .+|.
T Consensus 69 n~L~~lp~~l-~~~L~~L~Ls~N-~l~~ip---~~l~~L~~L~Ls~N~l~-~ip~l~~--~L~~L~Ls~N~l~-~lp~-- 137 (571)
T 3cvr_A 69 LNLSSLPDNL-PPQITVLEITQN-ALISLP---ELPASLEYLDACDNRLS-TLPELPA--SLKHLDVDNNQLT-MLPE-- 137 (571)
T ss_dssp SCCSCCCSCC-CTTCSEEECCSS-CCSCCC---CCCTTCCEEECCSSCCS-CCCCCCT--TCCEEECCSSCCS-CCCC--
T ss_pred CCCCccCHhH-cCCCCEEECcCC-CCcccc---cccCCCCEEEccCCCCC-Ccchhhc--CCCEEECCCCcCC-CCCC--
Confidence 3567788876 489999999999 999998 45899999999999854 4887554 9999999998654 4776
Q ss_pred cCCCCCCEEeccCCcCccccCCCCCCCCCcEEEEecCCCCCccCCCCCCCcEEEeecccCcccCCcCCCCCCc-------
Q 043008 82 TNFNHLSMLCFRHCKNLRHFPNNLHFVCPIIIDFSYCVNLTEFPQISGNIIDLILTETAIEEVPSSTECLTNL------- 154 (517)
Q Consensus 82 ~~l~~L~~L~L~~~~~l~~lp~~~~l~sL~~L~L~~c~~l~~~p~~~~~L~~L~L~~~~i~~lp~~i~~l~~L------- 154 (517)
.+++|+.|++++|... .+|. .+++|+.|++++|. ++.+|....+|+.|+|++|.|+.+|. +.. +|
T Consensus 138 -~l~~L~~L~Ls~N~l~-~lp~--~l~~L~~L~Ls~N~-L~~lp~l~~~L~~L~Ls~N~L~~lp~-~~~--~L~~~~~~L 209 (571)
T 3cvr_A 138 -LPALLEYINADNNQLT-MLPE--LPTSLEVLSVRNNQ-LTFLPELPESLEALDVSTNLLESLPA-VPV--RNHHSEETE 209 (571)
T ss_dssp -CCTTCCEEECCSSCCS-CCCC--CCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSSCCSSCCC-CC----------CC
T ss_pred -cCccccEEeCCCCccC-cCCC--cCCCcCEEECCCCC-CCCcchhhCCCCEEECcCCCCCchhh-HHH--hhhcccccc
Confidence 6899999999999755 4776 68899999999975 55688755689999999999999998 654 77
Q ss_pred cEEEcccCcCCccccccccCCCCCcEEEcCCCC--CcCCccCCC
Q 043008 155 QYLFLCSCKKLKRVSTSICKFKSLVWLSLNNDL--TAIPQEIGC 196 (517)
Q Consensus 155 ~~L~l~~~~~l~~lp~~l~~l~~L~~L~Ls~~l--~~lp~~l~~ 196 (517)
+.|++++|.+. .+|..+..+++|+.|++++|. +.+|..+..
T Consensus 210 ~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~ 252 (571)
T 3cvr_A 210 IFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQ 252 (571)
T ss_dssp EEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHH
T ss_pred eEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHH
Confidence 99999999665 689888889999999998864 344544433
No 96
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.63 E-value=2.2e-15 Score=140.80 Aligned_cols=175 Identities=10% Similarity=0.033 Sum_probs=93.5
Q ss_pred cEEeccCCCCCccccccCCCCCCccEEEccCCCCCCCCCC-CCCCCCccEEeeccccCCcccCccccCCCCCCEEeccCC
Q 043008 17 VELNLPYGHKVVQIWEGKKRAFKLKFINLSHSQCHIKIPD-PSETPNLERIDILNCTNPACVLSSITNFNHLSMLCFRHC 95 (517)
Q Consensus 17 ~~L~L~~n~~l~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~~~~l~~~p~si~~l~~L~~L~L~~~ 95 (517)
+.++.+++ .+..+|.++ .++|++|+|++|.+....+. +..+++|++|++++|......+..+..+++|++|++++|
T Consensus 10 ~~v~c~~~-~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 10 TTVECYSQ-GRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp TEEECCSS-CCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCC-CccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence 45666666 677776554 34777788877774433333 667777777777777544333344567777777777776
Q ss_pred cCccccCCCC-CCCCCcEEEEecCCCCCccCCCCCCCcEEEeecccCcccCCc-CCCCCCccEEEcccCcCCcccccccc
Q 043008 96 KNLRHFPNNL-HFVCPIIIDFSYCVNLTEFPQISGNIIDLILTETAIEEVPSS-TECLTNLQYLFLCSCKKLKRVSTSIC 173 (517)
Q Consensus 96 ~~l~~lp~~~-~l~sL~~L~L~~c~~l~~~p~~~~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~l~~~~~l~~lp~~l~ 173 (517)
......+..+ ++++|++|++++| .++.+|.. +..+++|+.|++++|.+.+..+..+.
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~N---------------------~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~ 145 (208)
T 2o6s_A 87 QLQSLPNGVFDKLTQLKELALNTN---------------------QLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFD 145 (208)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSS---------------------CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTT
T ss_pred cCCccCHhHhcCccCCCEEEcCCC---------------------cCcccCHhHhccCCcCCEEECCCCccceeCHHHhc
Confidence 5443222223 5555555555553 23333322 34555566666655544433333344
Q ss_pred CCCCCcEEEcCCCCCcCCccCCCCCCCCEEEecCCCCC-cchhhhhcC
Q 043008 174 KFKSLVWLSLNNDLTAIPQEIGCLSSLECLNLGGNNFE-GLPASIKQI 220 (517)
Q Consensus 174 ~l~~L~~L~Ls~~l~~lp~~l~~l~~L~~L~Ls~n~l~-~lp~~l~~l 220 (517)
.+++|+.|++++|. ..+.+++|+.|+++.|+++ .+|.+++.+
T Consensus 146 ~l~~L~~L~l~~N~-----~~~~~~~l~~L~~~~n~~~g~ip~~~~~l 188 (208)
T 2o6s_A 146 RLTSLQYIWLHDNP-----WDCTCPGIRYLSEWINKHSGVVRNSAGSV 188 (208)
T ss_dssp TCTTCCEEECCSCC-----BCCCTTTTHHHHHHHHHCTTTBBCTTSSB
T ss_pred cCCCccEEEecCCC-----eecCCCCHHHHHHHHHhCCceeeccCccc
Confidence 44444444444331 1223345555555555555 355444433
No 97
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.62 E-value=8.6e-18 Score=171.22 Aligned_cols=220 Identities=13% Similarity=0.069 Sum_probs=162.6
Q ss_pred CCCCccEEeccCCCCCcccc-----ccCCCCC-CccEEEccCCCCCCCCC-CCCCC-----CCccEEeeccccCCcccCc
Q 043008 12 KPKNLVELNLPYGHKVVQIW-----EGKKRAF-KLKFINLSHSQCHIKIP-DPSET-----PNLERIDILNCTNPACVLS 79 (517)
Q Consensus 12 ~~~~L~~L~L~~n~~l~~l~-----~~~~~l~-~L~~L~Ls~~~~l~~~p-~l~~l-----~~L~~L~L~~~~~l~~~p~ 79 (517)
.+++|++|+|++| .+...+ +.+..++ +|++|+|++|.+....+ .+..+ ++|++|+|++|......+.
T Consensus 20 ~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~ 98 (362)
T 3goz_A 20 IPHGVTSLDLSLN-NLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSD 98 (362)
T ss_dssp SCTTCCEEECTTS-CGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHH
T ss_pred CCCCceEEEccCC-CCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHH
Confidence 4566999999999 888774 6778888 99999999998655444 24443 9999999999976555554
Q ss_pred c----ccCC-CCCCEEeccCCcCccccCCCC-----C-CCCCcEEEEecCCCCC----ccCCC----CCCCcEEEeeccc
Q 043008 80 S----ITNF-NHLSMLCFRHCKNLRHFPNNL-----H-FVCPIIIDFSYCVNLT----EFPQI----SGNIIDLILTETA 140 (517)
Q Consensus 80 s----i~~l-~~L~~L~L~~~~~l~~lp~~~-----~-l~sL~~L~L~~c~~l~----~~p~~----~~~L~~L~L~~~~ 140 (517)
. +..+ ++|++|++++|......+..+ . .++|++|++++|.... .++.. ..+|+.|+|++|.
T Consensus 99 ~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~ 178 (362)
T 3goz_A 99 ELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNN 178 (362)
T ss_dssp HHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSC
T ss_pred HHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCC
Confidence 3 4445 899999999998654433322 2 3699999999986542 22221 2489999999999
Q ss_pred CcccCC-----cCCCC-CCccEEEcccCcCCcc----ccccccC-CCCCcEEEcCCCC-CcC-----CccCCCCCCCCEE
Q 043008 141 IEEVPS-----STECL-TNLQYLFLCSCKKLKR----VSTSICK-FKSLVWLSLNNDL-TAI-----PQEIGCLSSLECL 203 (517)
Q Consensus 141 i~~lp~-----~i~~l-~~L~~L~l~~~~~l~~----lp~~l~~-l~~L~~L~Ls~~l-~~l-----p~~l~~l~~L~~L 203 (517)
+..... .+..+ ++|+.|++++|.+... ++..+.. .++|+.|++++|. ... ...+..+++|++|
T Consensus 179 l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L 258 (362)
T 3goz_A 179 LASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTV 258 (362)
T ss_dssp GGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEE
T ss_pred CchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEE
Confidence 985442 34455 5999999999976552 5566665 4599999998864 332 3456888999999
Q ss_pred EecCCCCCc--------chhhhhcCCCCCEEeccCCC
Q 043008 204 NLGGNNFEG--------LPASIKQISRLECLDLSYCN 232 (517)
Q Consensus 204 ~Ls~n~l~~--------lp~~l~~l~~L~~L~L~~c~ 232 (517)
+|++|.+.. ++..+..+++|+.|++++|+
T Consensus 259 ~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 259 YLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp EEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred EeccCCccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence 999998443 44566788889999999854
No 98
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.61 E-value=2.1e-16 Score=171.34 Aligned_cols=187 Identities=18% Similarity=0.204 Sum_probs=117.7
Q ss_pred CCCccEEeccCCCCCccccccCCCCCCccEEEccCCCCCCCCCCCCCCCCccEEeeccccCCcccCccccCCCCCCEEec
Q 043008 13 PKNLVELNLPYGHKVVQIWEGKKRAFKLKFINLSHSQCHIKIPDPSETPNLERIDILNCTNPACVLSSITNFNHLSMLCF 92 (517)
Q Consensus 13 ~~~L~~L~L~~n~~l~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~~~~l~~~p~si~~l~~L~~L~L 92 (517)
+..+..+.+..+ .+..+. ....+++|+.|+|++|. +..+|.+..+++|+.|+|++|... .++. +..+++|+.|+|
T Consensus 20 l~~l~~l~l~~~-~i~~~~-~~~~L~~L~~L~l~~n~-i~~l~~l~~l~~L~~L~Ls~N~l~-~~~~-l~~l~~L~~L~L 94 (605)
T 1m9s_A 20 FAETIKDNLKKK-SVTDAV-TQNELNSIDQIIANNSD-IKSVQGIQYLPNVTKLFLNGNKLT-DIKP-LTNLKNLGWLFL 94 (605)
T ss_dssp HHHHHHHHTTCS-CTTSEE-CHHHHTTCCCCBCTTCC-CCCCTTGGGCTTCCEEECTTSCCC-CCGG-GGGCTTCCEEEC
T ss_pred HHHHHHHhccCC-Cccccc-chhcCCCCCEEECcCCC-CCCChHHccCCCCCEEEeeCCCCC-CChh-hccCCCCCEEEC
Confidence 445666667666 565542 24567888888888887 566677888888888888887544 3443 788888888888
Q ss_pred cCCcCccccCCCC-CCCCCcEEEEecCCCCCccCCCCCCCcEEEeecccCcccCCcCCCCCCccEEEcccCcCCcccccc
Q 043008 93 RHCKNLRHFPNNL-HFVCPIIIDFSYCVNLTEFPQISGNIIDLILTETAIEEVPSSTECLTNLQYLFLCSCKKLKRVSTS 171 (517)
Q Consensus 93 ~~~~~l~~lp~~~-~l~sL~~L~L~~c~~l~~~p~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~ 171 (517)
++|... .+| .+ .+++|+.|+|++|. +..++ .+..+++|+.|+|++|.+... ..
T Consensus 95 s~N~l~-~l~-~l~~l~~L~~L~Ls~N~---------------------l~~l~-~l~~l~~L~~L~Ls~N~l~~l--~~ 148 (605)
T 1m9s_A 95 DENKIK-DLS-SLKDLKKLKSLSLEHNG---------------------ISDIN-GLVHLPQLESLYLGNNKITDI--TV 148 (605)
T ss_dssp CSSCCC-CCT-TSTTCTTCCEEECTTSC---------------------CCCCG-GGGGCTTCSEEECCSSCCCCC--GG
T ss_pred cCCCCC-CCh-hhccCCCCCEEEecCCC---------------------CCCCc-cccCCCccCEEECCCCccCCc--hh
Confidence 887543 344 34 67777777776654 22222 244455555555555544332 34
Q ss_pred ccCCCCCcEEEcCCC-CCcCCccCCCCCCCCEEEecCCCCCcchhhhhcCCCCCEEeccCCC
Q 043008 172 ICKFKSLVWLSLNND-LTAIPQEIGCLSSLECLNLGGNNFEGLPASIKQISRLECLDLSYCN 232 (517)
Q Consensus 172 l~~l~~L~~L~Ls~~-l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~c~ 232 (517)
+..+++|+.|+|++| +..++. +..+++|+.|+|++|.|..+| .+..+++|+.|+|++|+
T Consensus 149 l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i~~l~-~l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 149 LSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLR-ALAGLKNLDVLELFSQE 208 (605)
T ss_dssp GGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCG-GGTTCTTCSEEECCSEE
T ss_pred hcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCCCCCCh-HHccCCCCCEEEccCCc
Confidence 555556666666543 233333 666667777777777777665 46667777777777643
No 99
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.59 E-value=1.2e-14 Score=135.75 Aligned_cols=163 Identities=10% Similarity=0.075 Sum_probs=118.4
Q ss_pred CCCCCCCCCCCCCccEEeccCCCCCccccc-cCCCCCCccEEEccCCCCCCCCC-C-CCCCCCccEEeeccccCCcccCc
Q 043008 3 PLRTLPSNFKPKNLVELNLPYGHKVVQIWE-GKKRAFKLKFINLSHSQCHIKIP-D-PSETPNLERIDILNCTNPACVLS 79 (517)
Q Consensus 3 pl~~lP~~f~~~~L~~L~L~~n~~l~~l~~-~~~~l~~L~~L~Ls~~~~l~~~p-~-l~~l~~L~~L~L~~~~~l~~~p~ 79 (517)
.+..+|..+ +++|++|++++| .+..++. .+..+++|++|+|++|.+. .+| . +..+++|++|+|++|......+.
T Consensus 18 ~l~~~p~~~-~~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 94 (208)
T 2o6s_A 18 GRTSVPTGI-PAQTTYLDLETN-SLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQLQSLPNG 94 (208)
T ss_dssp CCSSCCSCC-CTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred CccCCCCCC-CCCCcEEEcCCC-ccCcCChhhhcccccCcEEECCCCccC-ccChhhcCCCCCcCEEECCCCcCCccCHh
Confidence 356777665 679999999999 9998865 4689999999999999855 555 3 78999999999999966555555
Q ss_pred cccCCCCCCEEeccCCcCccccCCCC-CCCCCcEEEEecCCCCCccCC-C---CCCCcEEEeecccCcccCCcCCCCCCc
Q 043008 80 SITNFNHLSMLCFRHCKNLRHFPNNL-HFVCPIIIDFSYCVNLTEFPQ-I---SGNIIDLILTETAIEEVPSSTECLTNL 154 (517)
Q Consensus 80 si~~l~~L~~L~L~~~~~l~~lp~~~-~l~sL~~L~L~~c~~l~~~p~-~---~~~L~~L~L~~~~i~~lp~~i~~l~~L 154 (517)
.++.+++|++|++++|......+..+ .+++|+.|++++|.. ..+|. . +.+|+.|++++|.+. ..+++|
T Consensus 95 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l-~~~~~~~~~~l~~L~~L~l~~N~~~------~~~~~l 167 (208)
T 2o6s_A 95 VFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQL-KSVPDGVFDRLTSLQYIWLHDNPWD------CTCPGI 167 (208)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-SCCCTTTTTTCTTCCEEECCSCCBC------CCTTTT
T ss_pred HhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCcc-ceeCHHHhccCCCccEEEecCCCee------cCCCCH
Confidence 67999999999999997654444445 789999999988643 34432 2 234566666666433 334566
Q ss_pred cEEEcccCcCCccccccccCC
Q 043008 155 QYLFLCSCKKLKRVSTSICKF 175 (517)
Q Consensus 155 ~~L~l~~~~~l~~lp~~l~~l 175 (517)
+.|+++.|.+.+.+|..++.+
T Consensus 168 ~~L~~~~n~~~g~ip~~~~~l 188 (208)
T 2o6s_A 168 RYLSEWINKHSGVVRNSAGSV 188 (208)
T ss_dssp HHHHHHHHHCTTTBBCTTSSB
T ss_pred HHHHHHHHhCCceeeccCccc
Confidence 666666666666666555444
No 100
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.58 E-value=6.5e-15 Score=145.33 Aligned_cols=180 Identities=20% Similarity=0.188 Sum_probs=130.8
Q ss_pred EEEccCCCCCCCCCCCCCCCCccEEeeccccCCcccCccccCCCCCCEEeccCCcCccccCCCC-CCCCCcEEEEecCCC
Q 043008 42 FINLSHSQCHIKIPDPSETPNLERIDILNCTNPACVLSSITNFNHLSMLCFRHCKNLRHFPNNL-HFVCPIIIDFSYCVN 120 (517)
Q Consensus 42 ~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~~~~l~~~p~si~~l~~L~~L~L~~~~~l~~lp~~~-~l~sL~~L~L~~c~~ 120 (517)
.+.+..+. ...+..+..+++|+.|++++|. +..++ .+..+++|++|++++|.... ++. + .+++|+.|++++
T Consensus 28 ~~~l~~~~-~~~~~~~~~l~~L~~L~l~~~~-i~~~~-~~~~l~~L~~L~L~~n~l~~-~~~-l~~l~~L~~L~l~~--- 99 (291)
T 1h6t_A 28 KDNLKKKS-VTDAVTQNELNSIDQIIANNSD-IKSVQ-GIQYLPNVTKLFLNGNKLTD-IKP-LANLKNLGWLFLDE--- 99 (291)
T ss_dssp HHHTTCSC-TTSEECHHHHHTCCEEECTTSC-CCCCT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCS---
T ss_pred HHHhcCCC-cccccchhhcCcccEEEccCCC-cccCh-hHhcCCCCCEEEccCCccCC-Ccc-cccCCCCCEEECCC---
Confidence 33444443 2333345567788888888774 34443 47777888888887775443 332 3 555555555555
Q ss_pred CCccCCCCCCCcEEEeecccCcccCCcCCCCCCccEEEcccCcCCccccccccCCCCCcEEEcCCCC-CcCCccCCCCCC
Q 043008 121 LTEFPQISGNIIDLILTETAIEEVPSSTECLTNLQYLFLCSCKKLKRVSTSICKFKSLVWLSLNNDL-TAIPQEIGCLSS 199 (517)
Q Consensus 121 l~~~p~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~Ls~~l-~~lp~~l~~l~~ 199 (517)
|.++.+|. +..+++|+.|++++|.+... ..+..+++|+.|++++|. ..+ ..+..+++
T Consensus 100 ------------------n~l~~~~~-l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~ 157 (291)
T 1h6t_A 100 ------------------NKVKDLSS-LKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI-TVLSRLTK 157 (291)
T ss_dssp ------------------SCCCCGGG-GTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC-GGGGGCTT
T ss_pred ------------------CcCCCChh-hccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc-hhhccCCC
Confidence 45555554 88899999999999976653 468899999999998764 555 67889999
Q ss_pred CCEEEecCCCCCcchhhhhcCCCCCEEeccCCCCCCcCCCC--CCCccEEeccccc
Q 043008 200 LECLNLGGNNFEGLPASIKQISRLECLDLSYCNSLQSLPEL--PLHLEVLLATNCK 253 (517)
Q Consensus 200 L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~l--~~~L~~L~~~~c~ 253 (517)
|+.|++++|+++.++. +..+++|+.|++++ +.++.+|.+ .++|+.|++.+++
T Consensus 158 L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~-N~i~~l~~l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 158 LDTLSLEDNQISDIVP-LAGLTKLQNLYLSK-NHISDLRALAGLKNLDVLELFSQE 211 (291)
T ss_dssp CSEEECCSSCCCCCGG-GTTCTTCCEEECCS-SCCCBCGGGTTCTTCSEEEEEEEE
T ss_pred CCEEEccCCccccchh-hcCCCccCEEECCC-CcCCCChhhccCCCCCEEECcCCc
Confidence 9999999999999886 99999999999998 577777764 3678888887753
No 101
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.58 E-value=8.5e-16 Score=149.44 Aligned_cols=166 Identities=19% Similarity=0.210 Sum_probs=110.9
Q ss_pred CCCCccEEeccCCCCCccccccCCCCCCccEEEccCCCCCCCCCCCCCCCCccEEeeccccCCcccCccccCCCCCCEEe
Q 043008 12 KPKNLVELNLPYGHKVVQIWEGKKRAFKLKFINLSHSQCHIKIPDPSETPNLERIDILNCTNPACVLSSITNFNHLSMLC 91 (517)
Q Consensus 12 ~~~~L~~L~L~~n~~l~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~~~~l~~~p~si~~l~~L~~L~ 91 (517)
.+.+++.++++++ .+..++ .+..+++|+.|++++|. +..+|.+..+++|++|+|++|.. ..++. ++.+++|++|+
T Consensus 17 ~l~~l~~l~l~~~-~i~~~~-~~~~l~~L~~L~l~~n~-i~~l~~l~~l~~L~~L~L~~N~i-~~~~~-l~~l~~L~~L~ 91 (263)
T 1xeu_A 17 GLANAVKQNLGKQ-SVTDLV-SQKELSGVQNFNGDNSN-IQSLAGMQFFTNLKELHLSHNQI-SDLSP-LKDLTKLEELS 91 (263)
T ss_dssp HHHHHHHHHHTCS-CTTSEE-CHHHHTTCSEEECTTSC-CCCCTTGGGCTTCCEEECCSSCC-CCCGG-GTTCSSCCEEE
T ss_pred HHHHHHHHHhcCC-Cccccc-chhhcCcCcEEECcCCC-cccchHHhhCCCCCEEECCCCcc-CCChh-hccCCCCCEEE
Confidence 4667788888888 888776 56788899999999887 55677888888899999988854 44444 78888888888
Q ss_pred ccCCcCccccCCCCCCCCCcEEEEecCCCCCccCCCCCCCcEEEeecccCcccCCcCCCCCCccEEEcccCcCCcccccc
Q 043008 92 FRHCKNLRHFPNNLHFVCPIIIDFSYCVNLTEFPQISGNIIDLILTETAIEEVPSSTECLTNLQYLFLCSCKKLKRVSTS 171 (517)
Q Consensus 92 L~~~~~l~~lp~~~~l~sL~~L~L~~c~~l~~~p~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~ 171 (517)
+++|... .+|.... .+|+.|++++|.++.++ .+..+++|+.|++++|.+.+. +
T Consensus 92 L~~N~l~-~l~~~~~----------------------~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i~~~-~-- 144 (263)
T 1xeu_A 92 VNRNRLK-NLNGIPS----------------------ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNKLKSI-V-- 144 (263)
T ss_dssp CCSSCCS-CCTTCCC----------------------SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSCCCBC-G--
T ss_pred CCCCccC-CcCcccc----------------------CcccEEEccCCccCCCh-hhcCcccccEEECCCCcCCCC-h--
Confidence 8887533 2332112 34455555555555554 366677777777777754332 2
Q ss_pred ccCCCCCcEEEcCCCCCcCCccCCCCCCCCEEEecCCCCCcchhhhhcCCCCCEEeccCC
Q 043008 172 ICKFKSLVWLSLNNDLTAIPQEIGCLSSLECLNLGGNNFEGLPASIKQISRLECLDLSYC 231 (517)
Q Consensus 172 l~~l~~L~~L~Ls~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~c 231 (517)
.+..+++|+.|+|++|.++.+ ..+..+++|+.|++++|
T Consensus 145 ---------------------~l~~l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~l~~N 182 (263)
T 1xeu_A 145 ---------------------MLGFLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLTGQ 182 (263)
T ss_dssp ---------------------GGGGCTTCCEEECTTSCCCBC-TTSTTCCCCCEEEEEEE
T ss_pred ---------------------HHccCCCCCEEECCCCcCcch-HHhccCCCCCEEeCCCC
Confidence 244556666666666666666 45666666777777663
No 102
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.57 E-value=1.3e-14 Score=134.46 Aligned_cols=148 Identities=15% Similarity=0.158 Sum_probs=103.6
Q ss_pred CCCCCccEEeeccccCCcccCccccCCCCCCEEeccCCcCccccCCCC-CCCCCcEEEEecCCCCCccCCCCCCCcEEEe
Q 043008 58 SETPNLERIDILNCTNPACVLSSITNFNHLSMLCFRHCKNLRHFPNNL-HFVCPIIIDFSYCVNLTEFPQISGNIIDLIL 136 (517)
Q Consensus 58 ~~l~~L~~L~L~~~~~l~~~p~si~~l~~L~~L~L~~~~~l~~lp~~~-~l~sL~~L~L~~c~~l~~~p~~~~~L~~L~L 136 (517)
..+++|+.|++++|.. ..+| .+..+++|++|++++| ....++ .+ .+++| +.|++
T Consensus 41 ~~l~~L~~L~l~~n~i-~~l~-~l~~l~~L~~L~l~~n-~~~~~~-~l~~l~~L---------------------~~L~l 95 (197)
T 4ezg_A 41 AQMNSLTYITLANINV-TDLT-GIEYAHNIKDLTINNI-HATNYN-PISGLSNL---------------------ERLRI 95 (197)
T ss_dssp HHHHTCCEEEEESSCC-SCCT-TGGGCTTCSEEEEESC-CCSCCG-GGTTCTTC---------------------CEEEE
T ss_pred hhcCCccEEeccCCCc-cChH-HHhcCCCCCEEEccCC-CCCcch-hhhcCCCC---------------------CEEEe
Confidence 3455566666665532 2444 4555555555555555 222222 22 44444 55555
Q ss_pred ecccCcc-cCCcCCCCCCccEEEcccCcCCccccccccCCCCCcEEEcCCC--CCcCCccCCCCCCCCEEEecCCCCCcc
Q 043008 137 TETAIEE-VPSSTECLTNLQYLFLCSCKKLKRVSTSICKFKSLVWLSLNND--LTAIPQEIGCLSSLECLNLGGNNFEGL 213 (517)
Q Consensus 137 ~~~~i~~-lp~~i~~l~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~Ls~~--l~~lp~~l~~l~~L~~L~Ls~n~l~~l 213 (517)
++|.+.. .|..+..+++|+.|++++|.+....|..+..+++|+.|++++| +..+| .+..+++|+.|++++|.++.+
T Consensus 96 ~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~ 174 (197)
T 4ezg_A 96 MGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDY 174 (197)
T ss_dssp ECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCC
T ss_pred ECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcCh
Confidence 5555653 5667888899999999999888777888889999999999776 56665 688899999999999999988
Q ss_pred hhhhhcCCCCCEEeccCCC
Q 043008 214 PASIKQISRLECLDLSYCN 232 (517)
Q Consensus 214 p~~l~~l~~L~~L~L~~c~ 232 (517)
+ .+..+++|+.|++++|+
T Consensus 175 ~-~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 175 R-GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp T-TGGGCSSCCEEEECBC-
T ss_pred H-HhccCCCCCEEEeeCcc
Confidence 8 78899999999999754
No 103
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.56 E-value=4.1e-15 Score=161.22 Aligned_cols=184 Identities=20% Similarity=0.177 Sum_probs=135.4
Q ss_pred CCccEEEccCCCCCCCCCCCCCCCCccEEeeccccCCcccCccccCCCCCCEEeccCCcCccccCCCC-CCCCCcEEEEe
Q 043008 38 FKLKFINLSHSQCHIKIPDPSETPNLERIDILNCTNPACVLSSITNFNHLSMLCFRHCKNLRHFPNNL-HFVCPIIIDFS 116 (517)
Q Consensus 38 ~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~~~~l~~~p~si~~l~~L~~L~L~~~~~l~~lp~~~-~l~sL~~L~L~ 116 (517)
.++..+++..+. +..+..+..+++|+.|++++|. +..++ .+..+++|+.|+|++|.... ++. + .+++|+.|+|+
T Consensus 21 ~~l~~l~l~~~~-i~~~~~~~~L~~L~~L~l~~n~-i~~l~-~l~~l~~L~~L~Ls~N~l~~-~~~-l~~l~~L~~L~Ls 95 (605)
T 1m9s_A 21 AETIKDNLKKKS-VTDAVTQNELNSIDQIIANNSD-IKSVQ-GIQYLPNVTKLFLNGNKLTD-IKP-LTNLKNLGWLFLD 95 (605)
T ss_dssp HHHHHHHTTCSC-TTSEECHHHHTTCCCCBCTTCC-CCCCT-TGGGCTTCCEEECTTSCCCC-CGG-GGGCTTCCEEECC
T ss_pred HHHHHHhccCCC-cccccchhcCCCCCEEECcCCC-CCCCh-HHccCCCCCEEEeeCCCCCC-Chh-hccCCCCCEEECc
Confidence 344445555554 3334445667888888888874 44444 57788888888888875443 332 4 56666666655
Q ss_pred cCCCCCccCCCCCCCcEEEeecccCcccCCcCCCCCCccEEEcccCcCCccccccccCCCCCcEEEcCCCC-CcCCccCC
Q 043008 117 YCVNLTEFPQISGNIIDLILTETAIEEVPSSTECLTNLQYLFLCSCKKLKRVSTSICKFKSLVWLSLNNDL-TAIPQEIG 195 (517)
Q Consensus 117 ~c~~l~~~p~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~Ls~~l-~~lp~~l~ 195 (517)
+ |.+..+| .+..+++|+.|++++|.+.. + ..+..+++|+.|+|++|. ..+ ..+.
T Consensus 96 ~---------------------N~l~~l~-~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l-~~l~ 150 (605)
T 1m9s_A 96 E---------------------NKIKDLS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI-TVLS 150 (605)
T ss_dssp S---------------------SCCCCCT-TSTTCTTCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC-GGGG
T ss_pred C---------------------CCCCCCh-hhccCCCCCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCCc-hhhc
Confidence 5 4455544 58889999999999997765 3 458899999999998764 555 6789
Q ss_pred CCCCCCEEEecCCCCCcchhhhhcCCCCCEEeccCCCCCCcCCCC--CCCccEEeccccc
Q 043008 196 CLSSLECLNLGGNNFEGLPASIKQISRLECLDLSYCNSLQSLPEL--PLHLEVLLATNCK 253 (517)
Q Consensus 196 ~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~l--~~~L~~L~~~~c~ 253 (517)
.+++|+.|+|++|.|..++. +..+++|+.|+|++| .+..+|.+ .++|+.|++.++.
T Consensus 151 ~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N-~i~~l~~l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 151 RLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKN-HISDLRALAGLKNLDVLELFSQE 208 (605)
T ss_dssp SCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCBCGGGTTCTTCSEEECCSEE
T ss_pred ccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCC-CCCCChHHccCCCCCEEEccCCc
Confidence 99999999999999999876 999999999999984 67777654 3688888888754
No 104
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.56 E-value=5.4e-14 Score=133.65 Aligned_cols=148 Identities=18% Similarity=0.151 Sum_probs=77.8
Q ss_pred cEEeccCCCCCccccccCCCCCCccEEEccCCCCCCCCCC-CCCCCCccEEeeccccCCcccCccccCCCCCCEEeccCC
Q 043008 17 VELNLPYGHKVVQIWEGKKRAFKLKFINLSHSQCHIKIPD-PSETPNLERIDILNCTNPACVLSSITNFNHLSMLCFRHC 95 (517)
Q Consensus 17 ~~L~L~~n~~l~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~~~~l~~~p~si~~l~~L~~L~L~~~ 95 (517)
+.++.+++ .+..+|.++. ++|++|+|++|.+....|. +..+++|++|+|++|......+..+..+++|++|+|++|
T Consensus 22 ~~v~c~~~-~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 22 TTVDCRSK-RHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN 98 (229)
T ss_dssp TEEECTTS-CCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEeEccCC-CcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence 34566665 6666665443 5666666666664444342 556666666666665432222233455555555555555
Q ss_pred cCccccCCCC-CCCCCcEEEEecCCCCCccCCCCCCCcEEEeecccCcccCCcCCCCCCccEEEcccCcCCccccccccC
Q 043008 96 KNLRHFPNNL-HFVCPIIIDFSYCVNLTEFPQISGNIIDLILTETAIEEVPSSTECLTNLQYLFLCSCKKLKRVSTSICK 174 (517)
Q Consensus 96 ~~l~~lp~~~-~l~sL~~L~L~~c~~l~~~p~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~l~~ 174 (517)
......+..+ .+++|+.| +|++|.+..+|..+..+++|+.|++++|.+.
T Consensus 99 ~l~~l~~~~~~~l~~L~~L---------------------~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~--------- 148 (229)
T 3e6j_A 99 QLTVLPSAVFDRLVHLKEL---------------------FMCCNKLTELPRGIERLTHLTHLALDQNQLK--------- 148 (229)
T ss_dssp CCCCCCTTTTTTCTTCCEE---------------------ECCSSCCCSCCTTGGGCTTCSEEECCSSCCC---------
T ss_pred cCCccChhHhCcchhhCeE---------------------eccCCcccccCcccccCCCCCEEECCCCcCC---------
Confidence 3332222222 33333333 3333444555555555666666666665433
Q ss_pred CCCCcEEEcCCCCCcCC-ccCCCCCCCCEEEecCCCCC
Q 043008 175 FKSLVWLSLNNDLTAIP-QEIGCLSSLECLNLGGNNFE 211 (517)
Q Consensus 175 l~~L~~L~Ls~~l~~lp-~~l~~l~~L~~L~Ls~n~l~ 211 (517)
.+| ..+..+++|+.|+|++|.+.
T Consensus 149 --------------~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 149 --------------SIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp --------------CCCTTTTTTCTTCCEEECTTSCBC
T ss_pred --------------ccCHHHHhCCCCCCEEEeeCCCcc
Confidence 232 23556677777777877765
No 105
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.53 E-value=8.5e-14 Score=141.57 Aligned_cols=169 Identities=15% Similarity=0.137 Sum_probs=93.3
Q ss_pred cEEeccCCCCCccccccCCCCCCccEEEccCCCCCCCCCC-CC-CCCCccEEeeccccCCcccCccccCCCCCCEEeccC
Q 043008 17 VELNLPYGHKVVQIWEGKKRAFKLKFINLSHSQCHIKIPD-PS-ETPNLERIDILNCTNPACVLSSITNFNHLSMLCFRH 94 (517)
Q Consensus 17 ~~L~L~~n~~l~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~-l~-~l~~L~~L~L~~~~~l~~~p~si~~l~~L~~L~L~~ 94 (517)
+.++++++ .++.+|..+. ..++.|+|++|.+....+. +. ++++|++|+|++|......+..|..+++|++|+|++
T Consensus 21 ~~l~c~~~-~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQ-QLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSS-CCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCC-CcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 45677776 6776665543 3466777777764333333 44 666666666666654444444566666666666666
Q ss_pred CcCccccCCCC-CCCCCcEEEEecCCCCCccCCCCCCCcEEEeecccCccc-CCcCCCCCCccEEEcccCcCCccccccc
Q 043008 95 CKNLRHFPNNL-HFVCPIIIDFSYCVNLTEFPQISGNIIDLILTETAIEEV-PSSTECLTNLQYLFLCSCKKLKRVSTSI 172 (517)
Q Consensus 95 ~~~l~~lp~~~-~l~sL~~L~L~~c~~l~~~p~~~~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~l~~~~~l~~lp~~l 172 (517)
|......+..+ ++++|+.|+|++ |.|..+ |..+..+++|+.|++++|.
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~---------------------N~i~~~~~~~~~~l~~L~~L~L~~N~--------- 147 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYN---------------------NHIVVVDRNAFEDMAQLQKLYLSQNQ--------- 147 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCS---------------------SCCCEECTTTTTTCTTCCEEECCSSC---------
T ss_pred CcCCcCCHHHhCCCcCCCEEECCC---------------------CcccEECHHHhCCcccCCEEECCCCc---------
Confidence 54332222222 333333333333 223322 2334445555555555543
Q ss_pred cCCCCCcEEEcCCCCCcCCccC----CCCCCCCEEEecCCCCCcch-hhhhcCCC--CCEEeccCCC
Q 043008 173 CKFKSLVWLSLNNDLTAIPQEI----GCLSSLECLNLGGNNFEGLP-ASIKQISR--LECLDLSYCN 232 (517)
Q Consensus 173 ~~l~~L~~L~Ls~~l~~lp~~l----~~l~~L~~L~Ls~n~l~~lp-~~l~~l~~--L~~L~L~~c~ 232 (517)
+..+|..+ ..+++|+.|+|++|+|+.+| ..+..++. |+.|+|.+|+
T Consensus 148 --------------l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 148 --------------ISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp --------------CCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSC
T ss_pred --------------CCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCC
Confidence 23444432 46788888888888888877 45667776 3778888743
No 106
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.52 E-value=9e-16 Score=166.09 Aligned_cols=265 Identities=13% Similarity=-0.008 Sum_probs=118.0
Q ss_pred ccEEeccCCCCCc--cccccCCCCCCccEEEccCCCCCCC----CCC-CCCCCCccEEeeccccCC----cccCccccCC
Q 043008 16 LVELNLPYGHKVV--QIWEGKKRAFKLKFINLSHSQCHIK----IPD-PSETPNLERIDILNCTNP----ACVLSSITNF 84 (517)
Q Consensus 16 L~~L~L~~n~~l~--~l~~~~~~l~~L~~L~Ls~~~~l~~----~p~-l~~l~~L~~L~L~~~~~l----~~~p~si~~l 84 (517)
|++|+|++|..+. .++.....+++|++|+|++|.+... ++. +..+++|++|++++|... ..++..+.++
T Consensus 140 L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~ 219 (592)
T 3ogk_B 140 LETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNC 219 (592)
T ss_dssp CCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHC
T ss_pred CcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhC
Confidence 6666666552121 1122223456666666666643221 111 234555666666555432 1233334455
Q ss_pred CCCCEEeccCCcCccccCCCC-CCCCCcEEEEecCCC--------------------------CCccCCC---CCCCcEE
Q 043008 85 NHLSMLCFRHCKNLRHFPNNL-HFVCPIIIDFSYCVN--------------------------LTEFPQI---SGNIIDL 134 (517)
Q Consensus 85 ~~L~~L~L~~~~~l~~lp~~~-~l~sL~~L~L~~c~~--------------------------l~~~p~~---~~~L~~L 134 (517)
++|+.|++++|... .+|..+ ++++|+.|+++++.. ...+|.. ..+|++|
T Consensus 220 ~~L~~L~L~~~~~~-~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L 298 (592)
T 3ogk_B 220 RSLVSVKVGDFEIL-ELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKL 298 (592)
T ss_dssp TTCCEEECSSCBGG-GGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEE
T ss_pred CCCcEEeccCccHH-HHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEE
Confidence 55666666555432 233323 445555555543221 2222222 2244555
Q ss_pred EeecccCc--ccCCcCCCCCCccEEEcccCcCCccccccccCCCCCcEEEcCC------------CCC--cCCccCCCCC
Q 043008 135 ILTETAIE--EVPSSTECLTNLQYLFLCSCKKLKRVSTSICKFKSLVWLSLNN------------DLT--AIPQEIGCLS 198 (517)
Q Consensus 135 ~L~~~~i~--~lp~~i~~l~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~Ls~------------~l~--~lp~~l~~l~ 198 (517)
++++|.+. .++..+..+++|+.|+++++-....++.....+++|++|++++ .+. .++.....++
T Consensus 299 ~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~ 378 (592)
T 3ogk_B 299 DLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQ 378 (592)
T ss_dssp EETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCT
T ss_pred ecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCc
Confidence 55555443 1222234455555555553211122233334455556665552 111 1111223456
Q ss_pred CCCEEEecCCCCCc-chhhhhc-CCCCCEEecc---CCCCCCcCCC---------CCCCccEEecccccCcCcCCCCCch
Q 043008 199 SLECLNLGGNNFEG-LPASIKQ-ISRLECLDLS---YCNSLQSLPE---------LPLHLEVLLATNCKRLQSLPEIPSC 264 (517)
Q Consensus 199 ~L~~L~Ls~n~l~~-lp~~l~~-l~~L~~L~L~---~c~~l~~lp~---------l~~~L~~L~~~~c~~l~~l~~~~~~ 264 (517)
+|++|+++.|+++. .+..+.. +++|+.|+++ .|+.++..|. -.++|+.|++..|... .....+..
T Consensus 379 ~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~-l~~~~~~~ 457 (592)
T 3ogk_B 379 ELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGG-LTDLGLSY 457 (592)
T ss_dssp TCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGG-CCHHHHHH
T ss_pred cCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCC-ccHHHHHH
Confidence 66666666666653 2333333 6677777775 3455555331 1356667766555431 00011111
Q ss_pred h-hhcchhhHHhhhcCCCC
Q 043008 265 L-EELDASVLEKLSKHSFG 282 (517)
Q Consensus 265 L-~~L~~l~~~~Ls~n~~~ 282 (517)
+ ..++.++.++|+.|.++
T Consensus 458 ~~~~~~~L~~L~L~~n~l~ 476 (592)
T 3ogk_B 458 IGQYSPNVRWMLLGYVGES 476 (592)
T ss_dssp HHHSCTTCCEEEECSCCSS
T ss_pred HHHhCccceEeeccCCCCC
Confidence 1 12444555666666654
No 107
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.52 E-value=7.7e-17 Score=173.63 Aligned_cols=176 Identities=17% Similarity=0.138 Sum_probs=137.0
Q ss_pred CCCCCCccEEeeccccCCcccCccccCCCCCCEEeccCCc-------------CccccCCCC-CCCCCcEEE-EecCC--
Q 043008 57 PSETPNLERIDILNCTNPACVLSSITNFNHLSMLCFRHCK-------------NLRHFPNNL-HFVCPIIID-FSYCV-- 119 (517)
Q Consensus 57 l~~l~~L~~L~L~~~~~l~~~p~si~~l~~L~~L~L~~~~-------------~l~~lp~~~-~l~sL~~L~-L~~c~-- 119 (517)
+...++|+.|+|++| .+..+|.+|+++++|+.|++++|. .....|..+ .+++|+.|+ ++.+.
T Consensus 345 ~~~~~~L~~L~Ls~n-~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~ 423 (567)
T 1dce_A 345 SATDEQLFRCELSVE-KSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD 423 (567)
T ss_dssp CSTTTTSSSCCCCHH-HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred cccCccceeccCChh-hHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc
Confidence 356788888888887 456788888888888888886654 233344444 666777776 33221
Q ss_pred ----------CCCccCCCCCCCcEEEeecccCcccCCcCCCCCCccEEEcccCcCCccccccccCCCCCcEEEcCCC-CC
Q 043008 120 ----------NLTEFPQISGNIIDLILTETAIEEVPSSTECLTNLQYLFLCSCKKLKRVSTSICKFKSLVWLSLNND-LT 188 (517)
Q Consensus 120 ----------~l~~~p~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~Ls~~-l~ 188 (517)
.+..+| ...|+.|+|++|.++.+|. ++.+++|+.|++++|.+. .+|..++.+++|+.|+|++| +.
T Consensus 424 ~L~~l~l~~n~i~~l~--~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~ 499 (567)
T 1dce_A 424 DLRSKFLLENSVLKME--YADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE 499 (567)
T ss_dssp HHHHHHHHHHHHHHHH--HTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC
T ss_pred hhhhhhhhcccccccC--ccCceEEEecCCCCCCCcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCC
Confidence 111222 1257899999999999997 999999999999999766 88999999999999999775 57
Q ss_pred cCCccCCCCCCCCEEEecCCCCCcc--hhhhhcCCCCCEEeccCCCCCCcCCC
Q 043008 189 AIPQEIGCLSSLECLNLGGNNFEGL--PASIKQISRLECLDLSYCNSLQSLPE 239 (517)
Q Consensus 189 ~lp~~l~~l~~L~~L~Ls~n~l~~l--p~~l~~l~~L~~L~L~~c~~l~~lp~ 239 (517)
.+| .++.+++|+.|+|++|+|+.+ |..+..+++|+.|+|++ +.++.+|.
T Consensus 500 ~lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~-N~l~~~~~ 550 (567)
T 1dce_A 500 NVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQG-NSLCQEEG 550 (567)
T ss_dssp CCG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTT-SGGGGSSS
T ss_pred CCc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecC-CcCCCCcc
Confidence 777 899999999999999999987 89999999999999998 45666554
No 108
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.52 E-value=4.5e-14 Score=143.62 Aligned_cols=141 Identities=19% Similarity=0.175 Sum_probs=108.9
Q ss_pred CCCCCCCCCCCCCccEEeccCCCCCcccccc-CC-CCCCccEEEccCCCCCCCCCC-CCCCCCccEEeeccccCCcccCc
Q 043008 3 PLRTLPSNFKPKNLVELNLPYGHKVVQIWEG-KK-RAFKLKFINLSHSQCHIKIPD-PSETPNLERIDILNCTNPACVLS 79 (517)
Q Consensus 3 pl~~lP~~f~~~~L~~L~L~~n~~l~~l~~~-~~-~l~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~~~~l~~~p~ 79 (517)
.++.+|..+ ++.++.|+|++| .+..++.. +. .+++|+.|+|++|.+....+. |.++++|++|+|++|......+.
T Consensus 29 ~l~~iP~~~-~~~l~~L~Ls~N-~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 106 (361)
T 2xot_A 29 QLPNVPQSL-PSYTALLDLSHN-NLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEF 106 (361)
T ss_dssp CCSSCCSSC-CTTCSEEECCSS-CCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTT
T ss_pred CcCccCccC-CCCCCEEECCCC-CCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHH
Confidence 467888766 567999999999 99988654 55 899999999999986555544 89999999999999976655566
Q ss_pred cccCCCCCCEEeccCCcCccccCCCC-CCCCCcEEEEecCCCCCccCCCCCCCcEEEeecccCcccCCcC----CCCCCc
Q 043008 80 SITNFNHLSMLCFRHCKNLRHFPNNL-HFVCPIIIDFSYCVNLTEFPQISGNIIDLILTETAIEEVPSST----ECLTNL 154 (517)
Q Consensus 80 si~~l~~L~~L~L~~~~~l~~lp~~~-~l~sL~~L~L~~c~~l~~~p~~~~~L~~L~L~~~~i~~lp~~i----~~l~~L 154 (517)
.|..+++|++|+|++|......|..+ ++++|+.|+|++|. +..+|..+ ..+++|
T Consensus 107 ~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~---------------------l~~l~~~~~~~~~~l~~L 165 (361)
T 2xot_A 107 LFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQ---------------------ISRFPVELIKDGNKLPKL 165 (361)
T ss_dssp TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC---------------------CCSCCGGGTC----CTTC
T ss_pred HhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCc---------------------CCeeCHHHhcCcccCCcC
Confidence 79999999999999998776667777 78888888877743 33344332 457777
Q ss_pred cEEEcccCcCCc
Q 043008 155 QYLFLCSCKKLK 166 (517)
Q Consensus 155 ~~L~l~~~~~l~ 166 (517)
+.|++++|.+..
T Consensus 166 ~~L~L~~N~l~~ 177 (361)
T 2xot_A 166 MLLDLSSNKLKK 177 (361)
T ss_dssp CEEECCSSCCCC
T ss_pred CEEECCCCCCCc
Confidence 788887775543
No 109
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.52 E-value=1.4e-13 Score=129.94 Aligned_cols=146 Identities=14% Similarity=0.095 Sum_probs=99.0
Q ss_pred cEEeccCCCCCccccccCCCCCCccEEEccCCCCCCCCC-CCCCCCCccEEeeccccCCcccCccccCCCCCCEEeccCC
Q 043008 17 VELNLPYGHKVVQIWEGKKRAFKLKFINLSHSQCHIKIP-DPSETPNLERIDILNCTNPACVLSSITNFNHLSMLCFRHC 95 (517)
Q Consensus 17 ~~L~L~~n~~l~~l~~~~~~l~~L~~L~Ls~~~~l~~~p-~l~~l~~L~~L~L~~~~~l~~~p~si~~l~~L~~L~L~~~ 95 (517)
+.++++++ .++.+|..+. ++|+.|+|++|.+....+ .|..+++|++|+|++|......|..|.++++|++|+|++|
T Consensus 14 ~~v~c~~~-~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGK-GLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTS-CCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCC-CcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 56788888 8888887654 688888888887554444 4788888888888888766666788888888888888887
Q ss_pred cCccccCCC-C-CCCCCcEEEEecCCCCCccCCCCCCCcEEEeecccCcccCCcCCCCCCccEEEcccCcCCcccccccc
Q 043008 96 KNLRHFPNN-L-HFVCPIIIDFSYCVNLTEFPQISGNIIDLILTETAIEEVPSSTECLTNLQYLFLCSCKKLKRVSTSIC 173 (517)
Q Consensus 96 ~~l~~lp~~-~-~l~sL~~L~L~~c~~l~~~p~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~l~ 173 (517)
... .+|.. + ++++|+.|+|++|...... |..+..+++|+.|++++|.+.+..+..+.
T Consensus 91 ~l~-~l~~~~f~~l~~L~~L~L~~N~l~~~~--------------------~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 149 (220)
T 2v9t_B 91 KIT-ELPKSLFEGLFSLQLLLLNANKINCLR--------------------VDAFQDLHNLNLLSLYDNKLQTIAKGTFS 149 (220)
T ss_dssp CCC-CCCTTTTTTCTTCCEEECCSSCCCCCC--------------------TTTTTTCTTCCEEECCSSCCSCCCTTTTT
T ss_pred cCC-ccCHhHccCCCCCCEEECCCCCCCEeC--------------------HHHcCCCCCCCEEECCCCcCCEECHHHHh
Confidence 654 44443 3 6777777777665432222 33455566666666666655555555566
Q ss_pred CCCCCcEEEcCCC
Q 043008 174 KFKSLVWLSLNND 186 (517)
Q Consensus 174 ~l~~L~~L~Ls~~ 186 (517)
.+++|+.|++++|
T Consensus 150 ~l~~L~~L~L~~N 162 (220)
T 2v9t_B 150 PLRAIQTMHLAQN 162 (220)
T ss_dssp TCTTCCEEECCSS
T ss_pred CCCCCCEEEeCCC
Confidence 6666666666554
No 110
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.52 E-value=8.2e-14 Score=131.58 Aligned_cols=146 Identities=12% Similarity=0.036 Sum_probs=99.5
Q ss_pred cEEeccCCCCCccccccCCCCCCccEEEccCCCCCCCCCC--CCCCCCccEEeeccccCCcccCccccCCCCCCEEeccC
Q 043008 17 VELNLPYGHKVVQIWEGKKRAFKLKFINLSHSQCHIKIPD--PSETPNLERIDILNCTNPACVLSSITNFNHLSMLCFRH 94 (517)
Q Consensus 17 ~~L~L~~n~~l~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~--l~~l~~L~~L~L~~~~~l~~~p~si~~l~~L~~L~L~~ 94 (517)
+.++++++ .++.+|..+. ..+++|+|++|.+....|. |..+++|++|+|++|......+..|+.+++|++|+|++
T Consensus 14 ~~l~~s~n-~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQ-KLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSS-CCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCC-CcccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 47888888 8888887653 3568888888885544442 67888888888888865555555788888888888888
Q ss_pred CcCccccCCCC-CCCCCcEEEEecCCCCCccCCCCCCCcEEEeecccCccc-CCcCCCCCCccEEEcccCcCCccccccc
Q 043008 95 CKNLRHFPNNL-HFVCPIIIDFSYCVNLTEFPQISGNIIDLILTETAIEEV-PSSTECLTNLQYLFLCSCKKLKRVSTSI 172 (517)
Q Consensus 95 ~~~l~~lp~~~-~l~sL~~L~L~~c~~l~~~p~~~~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~l~~~~~l~~lp~~l 172 (517)
|......|..+ ++++|++|+|++|. +..+ |..+..+++|+.|++++|.+.+..|..+
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~---------------------l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 149 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNR---------------------ITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAF 149 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSC---------------------CCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTT
T ss_pred CccCccCHhHhcCCcCCCEEECCCCc---------------------CCeECHhHcCCCccCCEEECCCCcCCEECHHHh
Confidence 76654444445 66777766666644 3333 3445566666666666666666556666
Q ss_pred cCCCCCcEEEcCCC
Q 043008 173 CKFKSLVWLSLNND 186 (517)
Q Consensus 173 ~~l~~L~~L~Ls~~ 186 (517)
..+++|+.|++++|
T Consensus 150 ~~l~~L~~L~L~~N 163 (220)
T 2v70_A 150 DTLHSLSTLNLLAN 163 (220)
T ss_dssp TTCTTCCEEECCSC
T ss_pred cCCCCCCEEEecCc
Confidence 66666777766654
No 111
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.51 E-value=6.8e-17 Score=174.05 Aligned_cols=202 Identities=15% Similarity=0.152 Sum_probs=131.5
Q ss_pred CCCCccEEeccCCCCCccccccCCCCCCccEEEccCCCCCCCCCCCCCCCCccEEeeccccCCcccCccccCCCCCCEEe
Q 043008 12 KPKNLVELNLPYGHKVVQIWEGKKRAFKLKFINLSHSQCHIKIPDPSETPNLERIDILNCTNPACVLSSITNFNHLSMLC 91 (517)
Q Consensus 12 ~~~~L~~L~L~~n~~l~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~~~~l~~~p~si~~l~~L~~L~ 91 (517)
..++|+.|+|++| .++.+|..++.+++|+.|++++|..+..+|. .+..+......|..++.+++|+.|+
T Consensus 347 ~~~~L~~L~Ls~n-~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~----------ll~~~~~~~~~~~~l~~l~~L~~L~ 415 (567)
T 1dce_A 347 TDEQLFRCELSVE-KSTVLQSELESCKELQELEPENKWCLLTIIL----------LMRALDPLLYEKETLQYFSTLKAVD 415 (567)
T ss_dssp TTTTSSSCCCCHH-HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH----------HHHHHCTGGGHHHHHHHHHHHHHHC
T ss_pred cCccceeccCChh-hHHhhHHHHHHHHHHHHhccccchhhhhHHH----------HHHhcccccCCHHHHHHHHhcccCc
Confidence 3455666666666 6666666666666666666644421000000 0000112334445555566666655
Q ss_pred -ccCCcCccccCC---------CCCCCCCcEEEEecCCCCCccCCC--CCCCcEEEeecccCcccCCcCCCCCCccEEEc
Q 043008 92 -FRHCKNLRHFPN---------NLHFVCPIIIDFSYCVNLTEFPQI--SGNIIDLILTETAIEEVPSSTECLTNLQYLFL 159 (517)
Q Consensus 92 -L~~~~~l~~lp~---------~~~l~sL~~L~L~~c~~l~~~p~~--~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l 159 (517)
++.+. ...++. .+....|+.|++++| .++.+|.. +.+|+.|+|++|.++.+|..++.+++|+.|++
T Consensus 416 ~l~~n~-~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n-~l~~lp~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L 493 (567)
T 1dce_A 416 PMRAAY-LDDLRSKFLLENSVLKMEYADVRVLHLAHK-DLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQA 493 (567)
T ss_dssp GGGHHH-HHHHHHHHHHHHHHHHHHHTTCSEEECTTS-CCSSCCCGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEEC
T ss_pred chhhcc-cchhhhhhhhcccccccCccCceEEEecCC-CCCCCcCccccccCcEeecCcccccccchhhhcCCCCCEEEC
Confidence 33321 111110 001234778888875 45556652 33568888888999999999999999999999
Q ss_pred ccCcCCccccccccCCCCCcEEEcCCC-CCcC--CccCCCCCCCCEEEecCCCCCcchhh----hhcCCCCCEEec
Q 043008 160 CSCKKLKRVSTSICKFKSLVWLSLNND-LTAI--PQEIGCLSSLECLNLGGNNFEGLPAS----IKQISRLECLDL 228 (517)
Q Consensus 160 ~~~~~l~~lp~~l~~l~~L~~L~Ls~~-l~~l--p~~l~~l~~L~~L~Ls~n~l~~lp~~----l~~l~~L~~L~L 228 (517)
++|.+.+ +| .++.+++|+.|++++| +..+ |..++.+++|+.|+|++|.++.+|.. +..+++|+.|++
T Consensus 494 s~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 494 SDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp CSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 9997766 67 8999999999999775 5666 88999999999999999999987643 345889998864
No 112
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.51 E-value=2.3e-15 Score=162.87 Aligned_cols=56 Identities=13% Similarity=0.030 Sum_probs=28.2
Q ss_pred CCCCccEEeccCCCCCc-----cccccCCCCCCccEEEccCCCCCCCCCC-CCCCCCccEEeec
Q 043008 12 KPKNLVELNLPYGHKVV-----QIWEGKKRAFKLKFINLSHSQCHIKIPD-PSETPNLERIDIL 69 (517)
Q Consensus 12 ~~~~L~~L~L~~n~~l~-----~l~~~~~~l~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~ 69 (517)
.+++|++|++++| .+. .++..+..+++|+.|+|++|.+. .+|. +..+++|+.|+++
T Consensus 190 ~~~~L~~L~L~~n-~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~-~l~~~~~~~~~L~~L~l~ 251 (592)
T 3ogk_B 190 HNTSLEVLNFYMT-EFAKISPKDLETIARNCRSLVSVKVGDFEIL-ELVGFFKAAANLEEFCGG 251 (592)
T ss_dssp HCCCCCEEECTTC-CCSSCCHHHHHHHHHHCTTCCEEECSSCBGG-GGHHHHHHCTTCCEEEEC
T ss_pred cCCCccEEEeecc-CCCccCHHHHHHHHhhCCCCcEEeccCccHH-HHHHHHhhhhHHHhhccc
Confidence 3566666666666 553 23333445666666666665422 2221 3334444444444
No 113
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.49 E-value=1.8e-14 Score=139.93 Aligned_cols=163 Identities=17% Similarity=0.174 Sum_probs=95.9
Q ss_pred CCCccEEEccCCCCCCCCCCCCCCCCccEEeeccccCCcccCccccCCCCCCEEeccCCcCccccCCCC-CCCCCcEEEE
Q 043008 37 AFKLKFINLSHSQCHIKIPDPSETPNLERIDILNCTNPACVLSSITNFNHLSMLCFRHCKNLRHFPNNL-HFVCPIIIDF 115 (517)
Q Consensus 37 l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~~~~l~~~p~si~~l~~L~~L~L~~~~~l~~lp~~~-~l~sL~~L~L 115 (517)
+.++..++++++. +..++.+..+++|++|++++|. +..++ .++.+++|++|++++|... .+|. + .+++|+.|++
T Consensus 18 l~~l~~l~l~~~~-i~~~~~~~~l~~L~~L~l~~n~-i~~l~-~l~~l~~L~~L~L~~N~i~-~~~~-l~~l~~L~~L~L 92 (263)
T 1xeu_A 18 LANAVKQNLGKQS-VTDLVSQKELSGVQNFNGDNSN-IQSLA-GMQFFTNLKELHLSHNQIS-DLSP-LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHHHTCSC-TTSEECHHHHTTCSEEECTTSC-CCCCT-TGGGCTTCCEEECCSSCCC-CCGG-GTTCSSCCEEEC
T ss_pred HHHHHHHHhcCCC-cccccchhhcCcCcEEECcCCC-cccch-HHhhCCCCCEEECCCCccC-CChh-hccCCCCCEEEC
Confidence 4455555666555 3344455556666666666653 33344 4555555555555555322 2222 2 3333333333
Q ss_pred ecCCCCCccCCCCCCCcEEEeecccCcccCCcCCCCCCccEEEcccCcCCccccccccCCCCCcEEEcCCCCCcCCccCC
Q 043008 116 SYCVNLTEFPQISGNIIDLILTETAIEEVPSSTECLTNLQYLFLCSCKKLKRVSTSICKFKSLVWLSLNNDLTAIPQEIG 195 (517)
Q Consensus 116 ~~c~~l~~~p~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~Ls~~l~~lp~~l~ 195 (517)
++ |.++.+|.... ++|+.|++++|.+ ..++ .+.
T Consensus 93 ~~---------------------N~l~~l~~~~~--~~L~~L~L~~N~l-----------------------~~~~-~l~ 125 (263)
T 1xeu_A 93 NR---------------------NRLKNLNGIPS--ACLSRLFLDNNEL-----------------------RDTD-SLI 125 (263)
T ss_dssp CS---------------------SCCSCCTTCCC--SSCCEEECCSSCC-----------------------SBSG-GGT
T ss_pred CC---------------------CccCCcCcccc--CcccEEEccCCcc-----------------------CCCh-hhc
Confidence 33 33333332211 5555555555532 2332 477
Q ss_pred CCCCCCEEEecCCCCCcchhhhhcCCCCCEEeccCCCCCCcCCCC--CCCccEEeccccc
Q 043008 196 CLSSLECLNLGGNNFEGLPASIKQISRLECLDLSYCNSLQSLPEL--PLHLEVLLATNCK 253 (517)
Q Consensus 196 ~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~l--~~~L~~L~~~~c~ 253 (517)
.+++|+.|+|++|+++.+| .+..+++|+.|++++ +.++.++.+ .++|+.|++.++.
T Consensus 126 ~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~-N~i~~~~~l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 126 HLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHG-NEITNTGGLTRLKKVNWIDLTGQK 183 (263)
T ss_dssp TCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTT-SCCCBCTTSTTCCCCCEEEEEEEE
T ss_pred CcccccEEECCCCcCCCCh-HHccCCCCCEEECCC-CcCcchHHhccCCCCCEEeCCCCc
Confidence 8899999999999999997 789999999999998 566666433 3578888877643
No 114
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.48 E-value=3.8e-13 Score=126.96 Aligned_cols=139 Identities=16% Similarity=0.133 Sum_probs=110.8
Q ss_pred CCCCCCCCCCCCCccEEeccCCCCCccccc-cCCCCCCccEEEccCCCCCCCCC-CCCCCCCccEEeeccccCCcccCcc
Q 043008 3 PLRTLPSNFKPKNLVELNLPYGHKVVQIWE-GKKRAFKLKFINLSHSQCHIKIP-DPSETPNLERIDILNCTNPACVLSS 80 (517)
Q Consensus 3 pl~~lP~~f~~~~L~~L~L~~n~~l~~l~~-~~~~l~~L~~L~Ls~~~~l~~~p-~l~~l~~L~~L~L~~~~~l~~~p~s 80 (517)
.++++|..+ +++|++|+|++| .++.++. .+..+++|+.|+|++|.+....| .|.++++|++|+|++|......+..
T Consensus 22 ~l~~iP~~l-~~~l~~L~l~~n-~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~ 99 (220)
T 2v9t_B 22 GLTEIPTNL-PETITEIRLEQN-TIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSL 99 (220)
T ss_dssp CCSSCCSSC-CTTCCEEECCSS-CCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTT
T ss_pred CcCcCCCcc-CcCCCEEECCCC-cCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhH
Confidence 467888776 489999999999 9998854 78999999999999999766656 4999999999999999655444445
Q ss_pred ccCCCCCCEEeccCCcCccccCCCC-CCCCCcEEEEecCCCCCccCCCCCCCcEEEeecccCcccCC-cCCCCCCccEEE
Q 043008 81 ITNFNHLSMLCFRHCKNLRHFPNNL-HFVCPIIIDFSYCVNLTEFPQISGNIIDLILTETAIEEVPS-STECLTNLQYLF 158 (517)
Q Consensus 81 i~~l~~L~~L~L~~~~~l~~lp~~~-~l~sL~~L~L~~c~~l~~~p~~~~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~ 158 (517)
+..+++|++|+|++|......|..+ ++++|+.|+|++|. ++.++. .+..+++|+.|+
T Consensus 100 f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~---------------------l~~~~~~~~~~l~~L~~L~ 158 (220)
T 2v9t_B 100 FEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNK---------------------LQTIAKGTFSPLRAIQTMH 158 (220)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC---------------------CSCCCTTTTTTCTTCCEEE
T ss_pred ccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCc---------------------CCEECHHHHhCCCCCCEEE
Confidence 7899999999999998777667767 78888888887754 333332 366677788888
Q ss_pred cccCcC
Q 043008 159 LCSCKK 164 (517)
Q Consensus 159 l~~~~~ 164 (517)
+++|.+
T Consensus 159 L~~N~~ 164 (220)
T 2v9t_B 159 LAQNPF 164 (220)
T ss_dssp CCSSCE
T ss_pred eCCCCc
Confidence 887754
No 115
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.48 E-value=4.5e-13 Score=127.23 Aligned_cols=147 Identities=18% Similarity=0.175 Sum_probs=87.8
Q ss_pred ccEEEccCCCCCCCCCC-CCCCCCccEEeeccccCCcccCccccCCCCCCEEeccCCcCccccCCCCCCCCCcEEEEecC
Q 043008 40 LKFINLSHSQCHIKIPD-PSETPNLERIDILNCTNPACVLSSITNFNHLSMLCFRHCKNLRHFPNNLHFVCPIIIDFSYC 118 (517)
Q Consensus 40 L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~~~~l~~~p~si~~l~~L~~L~L~~~~~l~~lp~~~~l~sL~~L~L~~c 118 (517)
.+.++.+++. ++.+|. +. ++|++|+|++|......|..+..+++|++|+|++|.. ..+|..
T Consensus 21 ~~~v~c~~~~-l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l-~~i~~~-------------- 82 (229)
T 3e6j_A 21 GTTVDCRSKR-HASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVG-------------- 82 (229)
T ss_dssp TTEEECTTSC-CSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTT--------------
T ss_pred CCEeEccCCC-cCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCC-CCcChh--------------
Confidence 4567776665 455553 32 6677777777665555566666666666666666543 223221
Q ss_pred CCCCccCCCCCCCcEEEeecccCcccCCcCCCCCCccEEEcccCcCCccccccccCCCCCcEEEcCC-CCCcCCccCCCC
Q 043008 119 VNLTEFPQISGNIIDLILTETAIEEVPSSTECLTNLQYLFLCSCKKLKRVSTSICKFKSLVWLSLNN-DLTAIPQEIGCL 197 (517)
Q Consensus 119 ~~l~~~p~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~Ls~-~l~~lp~~l~~l 197 (517)
.+..+++|+.|++++|.+....+..+..+++|+.|++++ .+..+|..+..+
T Consensus 83 ----------------------------~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l 134 (229)
T 3e6j_A 83 ----------------------------VFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERL 134 (229)
T ss_dssp ----------------------------TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGC
T ss_pred ----------------------------hcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCcccccCcccccC
Confidence 123333444444444433322223334444444444433 235566667778
Q ss_pred CCCCEEEecCCCCCcch-hhhhcCCCCCEEeccCCC
Q 043008 198 SSLECLNLGGNNFEGLP-ASIKQISRLECLDLSYCN 232 (517)
Q Consensus 198 ~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L~L~~c~ 232 (517)
++|+.|+|++|+|+.+| ..+..+++|+.|+|.+|+
T Consensus 135 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 135 THLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred CCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCC
Confidence 88999999999999877 457888999999998854
No 116
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.47 E-value=4.7e-13 Score=126.35 Aligned_cols=141 Identities=16% Similarity=0.111 Sum_probs=113.5
Q ss_pred CCCCCCCCCCCCCccEEeccCCCCCcccc--ccCCCCCCccEEEccCCCCCCCCC-CCCCCCCccEEeeccccCCcccCc
Q 043008 3 PLRTLPSNFKPKNLVELNLPYGHKVVQIW--EGKKRAFKLKFINLSHSQCHIKIP-DPSETPNLERIDILNCTNPACVLS 79 (517)
Q Consensus 3 pl~~lP~~f~~~~L~~L~L~~n~~l~~l~--~~~~~l~~L~~L~Ls~~~~l~~~p-~l~~l~~L~~L~L~~~~~l~~~p~ 79 (517)
.++++|..+ ++.+++|+|++| .+..++ ..+..+++|+.|+|++|.+....+ .|.++++|++|+|++|......+.
T Consensus 22 ~l~~iP~~~-~~~~~~L~L~~N-~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 99 (220)
T 2v70_A 22 KLNKIPEHI-PQYTAELRLNNN-EFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHK 99 (220)
T ss_dssp CCSSCCSCC-CTTCSEEECCSS-CCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGG
T ss_pred CcccCccCC-CCCCCEEEcCCC-cCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHh
Confidence 467888766 567899999999 999883 347899999999999999655555 499999999999999987766677
Q ss_pred cccCCCCCCEEeccCCcCccccCCCC-CCCCCcEEEEecCCCCCccCCCCCCCcEEEeecccCccc-CCcCCCCCCccEE
Q 043008 80 SITNFNHLSMLCFRHCKNLRHFPNNL-HFVCPIIIDFSYCVNLTEFPQISGNIIDLILTETAIEEV-PSSTECLTNLQYL 157 (517)
Q Consensus 80 si~~l~~L~~L~L~~~~~l~~lp~~~-~l~sL~~L~L~~c~~l~~~p~~~~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L 157 (517)
.++.+++|++|+|++|......|..+ .+++|+.|+|++|. ++.+ |..+..+++|+.|
T Consensus 100 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~---------------------l~~~~~~~~~~l~~L~~L 158 (220)
T 2v70_A 100 MFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQ---------------------ITTVAPGAFDTLHSLSTL 158 (220)
T ss_dssp GGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSC---------------------CCCBCTTTTTTCTTCCEE
T ss_pred HhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCc---------------------CCEECHHHhcCCCCCCEE
Confidence 79999999999999998877767777 77888877777743 4433 5567778888888
Q ss_pred EcccCcCCc
Q 043008 158 FLCSCKKLK 166 (517)
Q Consensus 158 ~l~~~~~l~ 166 (517)
++++|.+..
T Consensus 159 ~L~~N~l~c 167 (220)
T 2v70_A 159 NLLANPFNC 167 (220)
T ss_dssp ECCSCCEEC
T ss_pred EecCcCCcC
Confidence 888886543
No 117
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.42 E-value=7.3e-15 Score=158.91 Aligned_cols=84 Identities=15% Similarity=0.080 Sum_probs=45.6
Q ss_pred CCCCccEEeccCCCCCccc-cccCC-CCCCccEEEccCCCCCCC--CCC-CCCCCCccEEeeccccCCcc----cCcccc
Q 043008 12 KPKNLVELNLPYGHKVVQI-WEGKK-RAFKLKFINLSHSQCHIK--IPD-PSETPNLERIDILNCTNPAC----VLSSIT 82 (517)
Q Consensus 12 ~~~~L~~L~L~~n~~l~~l-~~~~~-~l~~L~~L~Ls~~~~l~~--~p~-l~~l~~L~~L~L~~~~~l~~----~p~si~ 82 (517)
.+++|++|+|+++ .+... +..+. .+++|+.|+|++|..... ++. +..+++|++|+|++|..... ++....
T Consensus 103 ~~~~L~~L~L~~~-~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~ 181 (594)
T 2p1m_B 103 SYTWLEEIRLKRM-VVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPD 181 (594)
T ss_dssp HCTTCCEEEEESC-BCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCT
T ss_pred hCCCCCeEEeeCc-EEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhh
Confidence 3567788888777 55422 22232 466777777777642322 222 23566777777776653221 222223
Q ss_pred CCCCCCEEeccCCc
Q 043008 83 NFNHLSMLCFRHCK 96 (517)
Q Consensus 83 ~l~~L~~L~L~~~~ 96 (517)
.+++|+.|++++|.
T Consensus 182 ~~~~L~~L~l~~~~ 195 (594)
T 2p1m_B 182 TYTSLVSLNISCLA 195 (594)
T ss_dssp TCCCCCEEECTTCC
T ss_pred cCCcCcEEEecccC
Confidence 45566666666654
No 118
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.42 E-value=7.5e-13 Score=132.72 Aligned_cols=87 Identities=16% Similarity=0.184 Sum_probs=53.4
Q ss_pred CCCccEEEcccCcCCccccccccCCCCCcEEEcCCCCCcCCc-cCCCCCCCC-EEEecCCCCCcch-hhhhcCCCCCEEe
Q 043008 151 LTNLQYLFLCSCKKLKRVSTSICKFKSLVWLSLNNDLTAIPQ-EIGCLSSLE-CLNLGGNNFEGLP-ASIKQISRLECLD 227 (517)
Q Consensus 151 l~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~Ls~~l~~lp~-~l~~l~~L~-~L~Ls~n~l~~lp-~~l~~l~~L~~L~ 227 (517)
+++|+.|++++|......+..|.++++|+.+++.+++..++. +|.++++|+ .+++.+ +++.++ ..+.+|++|+.|+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~ni~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~ 303 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHNLKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVL 303 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcccceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEE
Confidence 566666666666544444455666666676666666666654 366666676 666666 566554 4566666777776
Q ss_pred ccCCCCCCcCCC
Q 043008 228 LSYCNSLQSLPE 239 (517)
Q Consensus 228 L~~c~~l~~lp~ 239 (517)
+.+ +.++.++.
T Consensus 304 l~~-n~i~~I~~ 314 (329)
T 3sb4_A 304 ATG-DKITTLGD 314 (329)
T ss_dssp ECS-SCCCEECT
T ss_pred eCC-CccCccch
Confidence 654 45555543
No 119
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.40 E-value=4.1e-14 Score=156.86 Aligned_cols=186 Identities=13% Similarity=0.142 Sum_probs=103.1
Q ss_pred CCCCccEEeccCCCCCccccccCCCCCCccEEEc-----cCCCCCCCCC-CCCCCCCccEEeeccccCCcccCccccCCC
Q 043008 12 KPKNLVELNLPYGHKVVQIWEGKKRAFKLKFINL-----SHSQCHIKIP-DPSETPNLERIDILNCTNPACVLSSITNFN 85 (517)
Q Consensus 12 ~~~~L~~L~L~~n~~l~~l~~~~~~l~~L~~L~L-----s~~~~l~~~p-~l~~l~~L~~L~L~~~~~l~~~p~si~~l~ 85 (517)
..+.++.|+|.+| .+...+..+....+|+.+.+ +.|. +...| .+..+++|+.|+|++|.. ..+|..+..++
T Consensus 171 s~~~~~~l~L~~n-~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~-~~~~~~~~~~l~~L~~L~Ls~n~l-~~l~~~~~~l~ 247 (727)
T 4b8c_D 171 STPLTPKIELFAN-GKDEANQALLQHKKLSQYSIDEDDDIENR-MVMPKDSKYDDQLWHALDLSNLQI-FNISANIFKYD 247 (727)
T ss_dssp -----------------------------------------------------CCCCCCEEECTTSCC-SCCCGGGGGCC
T ss_pred cCCccceEEeeCC-CCCcchhhHhhcCccCcccccCccccccc-eecChhhhccCCCCcEEECCCCCC-CCCChhhcCCC
Confidence 3456888999888 77777665544444444433 3333 22334 378899999999999854 47888888999
Q ss_pred CCCEEeccCCcCccccCCCC-CCCCCcEEEEecCCCCCccCCCCC---CCcEEEeecccCcccCCcCCCCCCccEEEccc
Q 043008 86 HLSMLCFRHCKNLRHFPNNL-HFVCPIIIDFSYCVNLTEFPQISG---NIIDLILTETAIEEVPSSTECLTNLQYLFLCS 161 (517)
Q Consensus 86 ~L~~L~L~~~~~l~~lp~~~-~l~sL~~L~L~~c~~l~~~p~~~~---~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~ 161 (517)
+|++|+|++|... .+|..+ ++++|++|+|++|. +..+|..+. +|+.|+|++|.|..+|..++.+++|+.|+|++
T Consensus 248 ~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~ 325 (727)
T 4b8c_D 248 FLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNR-LTSLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEG 325 (727)
T ss_dssp SCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSC-CSSCCSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTT
T ss_pred CCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCc-CCccChhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCC
Confidence 9999999998665 888888 89999999999976 457887654 56899999999999999999999999999999
Q ss_pred CcCCccccccccCCCCC-cEEEcCCCC--CcCCccCCCCCCCCEEEecCC
Q 043008 162 CKKLKRVSTSICKFKSL-VWLSLNNDL--TAIPQEIGCLSSLECLNLGGN 208 (517)
Q Consensus 162 ~~~l~~lp~~l~~l~~L-~~L~Ls~~l--~~lp~~l~~l~~L~~L~Ls~n 208 (517)
|.+.+.+|..+..+... ..|++++|. ..+| ..|+.|++++|
T Consensus 326 N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p------~~l~~l~l~~n 369 (727)
T 4b8c_D 326 NPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLP------HERRFIEINTD 369 (727)
T ss_dssp SCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCC------CC---------
T ss_pred CccCCCChHHHhhcchhhhHHhhccCcccCcCc------cccceeEeecc
Confidence 98888888766543211 124454443 2233 35566666666
No 120
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.40 E-value=8.2e-13 Score=118.88 Aligned_cols=129 Identities=18% Similarity=0.190 Sum_probs=80.7
Q ss_pred CCCCccEEeccCCCCCc--cccccCCCCCCccEEEccCCCCCCCCCCCCCCCCccEEeeccccCCcccCccccCCCCCCE
Q 043008 12 KPKNLVELNLPYGHKVV--QIWEGKKRAFKLKFINLSHSQCHIKIPDPSETPNLERIDILNCTNPACVLSSITNFNHLSM 89 (517)
Q Consensus 12 ~~~~L~~L~L~~n~~l~--~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~~~~l~~~p~si~~l~~L~~ 89 (517)
.+++|++|++++| .+. .+|..+..+++|++|+|++|.+ ..++.+..+++|++|+|++|.....+|..++.+++|++
T Consensus 22 ~~~~L~~L~l~~n-~l~~~~i~~~~~~l~~L~~L~l~~n~l-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 22 TPAAVRELVLDNC-KSNDGKIEGLTAEFVNLEFLSLINVGL-ISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp CTTSCSEEECCSC-BCBTTBCSSCCGGGGGCCEEEEESSCC-CCCSSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred CcccCCEEECCCC-CCChhhHHHHHHhCCCCCEEeCcCCCC-CChhhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence 3566777777777 666 6666666777777777777763 33355667777777777776555445665666677777
Q ss_pred EeccCCcCccccC--CCC-CCCCCcEEEEecCCCCCccCCCCCCCcEEEeecccCcccCC----cCCCCCCccEEEcccC
Q 043008 90 LCFRHCKNLRHFP--NNL-HFVCPIIIDFSYCVNLTEFPQISGNIIDLILTETAIEEVPS----STECLTNLQYLFLCSC 162 (517)
Q Consensus 90 L~L~~~~~l~~lp--~~~-~l~sL~~L~L~~c~~l~~~p~~~~~L~~L~L~~~~i~~lp~----~i~~l~~L~~L~l~~~ 162 (517)
|++++|... .+| ..+ .+++|+ .|++++|.+..+|. .+..+++|+.|++++|
T Consensus 100 L~Ls~N~l~-~~~~~~~l~~l~~L~---------------------~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n 157 (168)
T 2ell_A 100 LNLSGNKLK-DISTLEPLKKLECLK---------------------SLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDR 157 (168)
T ss_dssp EECBSSSCC-SSGGGGGGSSCSCCC---------------------EEECCSSGGGTSTTHHHHHHTTCSSCCEETTEET
T ss_pred EeccCCccC-cchhHHHHhcCCCCC---------------------EEEeeCCcCcchHHHHHHHHHhCccCcEecCCCC
Confidence 777766432 222 223 444444 45555555665555 5677777777777777
Q ss_pred cC
Q 043008 163 KK 164 (517)
Q Consensus 163 ~~ 164 (517)
..
T Consensus 158 ~~ 159 (168)
T 2ell_A 158 ED 159 (168)
T ss_dssp TS
T ss_pred Ch
Confidence 43
No 121
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.39 E-value=1.8e-12 Score=116.65 Aligned_cols=91 Identities=23% Similarity=0.238 Sum_probs=60.5
Q ss_pred CCCCCCccEEEcccCcCCccccccccCCCCCcEEEcCCC-CCcCC--ccCCCCCCCCEEEecCCCCCcchh----hhhcC
Q 043008 148 TECLTNLQYLFLCSCKKLKRVSTSICKFKSLVWLSLNND-LTAIP--QEIGCLSSLECLNLGGNNFEGLPA----SIKQI 220 (517)
Q Consensus 148 i~~l~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~Ls~~-l~~lp--~~l~~l~~L~~L~Ls~n~l~~lp~----~l~~l 220 (517)
+..+++|+.|++++|.+.+.+|..+..+++|+.|++++| +..+| ..+..+++|+.|++++|.++.+|. .+..+
T Consensus 67 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l 146 (168)
T 2ell_A 67 LPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLL 146 (168)
T ss_dssp CCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTC
T ss_pred hccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhC
Confidence 444555555555555544444544555556666666443 34444 567788889999999999988876 78889
Q ss_pred CCCCEEeccCCCCCCcCCC
Q 043008 221 SRLECLDLSYCNSLQSLPE 239 (517)
Q Consensus 221 ~~L~~L~L~~c~~l~~lp~ 239 (517)
++|+.|++++| .+.++|+
T Consensus 147 ~~L~~L~l~~n-~~~~~~~ 164 (168)
T 2ell_A 147 PQLTYLDGYDR-EDQEAPD 164 (168)
T ss_dssp SSCCEETTEET-TSCBCCS
T ss_pred ccCcEecCCCC-Chhhccc
Confidence 99999999985 4555553
No 122
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.36 E-value=4.9e-12 Score=116.64 Aligned_cols=126 Identities=14% Similarity=0.033 Sum_probs=85.4
Q ss_pred cEEeccCCCCCccccccCCCCCCccEEEccCCCCCCCCCC--CCCCCCccEEeeccccCCcccCccccCCCCCCEEeccC
Q 043008 17 VELNLPYGHKVVQIWEGKKRAFKLKFINLSHSQCHIKIPD--PSETPNLERIDILNCTNPACVLSSITNFNHLSMLCFRH 94 (517)
Q Consensus 17 ~~L~L~~n~~l~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~--l~~l~~L~~L~L~~~~~l~~~p~si~~l~~L~~L~L~~ 94 (517)
+.++++++ .++.+|..+.. +|++|+|++|.+....+. +..+++|++|+|++|......|..++.+++|++|+|++
T Consensus 11 ~~l~~s~~-~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGR-GLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTS-CCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCC-CcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 67888888 88888776543 888888888875444443 67788888888888876666677788888888888888
Q ss_pred CcCccccCCCC-CCCCCcEEEEecCCCCCccCCCCCCCcEEEeecccCccc-CCcCCCCCCccEEEcccCcCCc
Q 043008 95 CKNLRHFPNNL-HFVCPIIIDFSYCVNLTEFPQISGNIIDLILTETAIEEV-PSSTECLTNLQYLFLCSCKKLK 166 (517)
Q Consensus 95 ~~~l~~lp~~~-~l~sL~~L~L~~c~~l~~~p~~~~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~l~~~~~l~ 166 (517)
|......|..+ ++++|++|++++| .++.+ |..+..+++|+.|++++|.+..
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N---------------------~l~~~~~~~~~~l~~L~~L~L~~N~l~c 140 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDN---------------------QISCVMPGSFEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSS---------------------CCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred CcCCccCHHHhcCCCCCCEEECCCC---------------------cCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence 76555444444 5566655555553 33322 4456666677777777765543
No 123
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.36 E-value=3.4e-14 Score=153.63 Aligned_cols=185 Identities=14% Similarity=0.072 Sum_probs=102.1
Q ss_pred CCCCCcEEEEecCCCCCc--c---CCCCCCCcEEEeecccCc--ccCCcCCCCCCccEEEcccC---------cCCcccc
Q 043008 106 HFVCPIIIDFSYCVNLTE--F---PQISGNIIDLILTETAIE--EVPSSTECLTNLQYLFLCSC---------KKLKRVS 169 (517)
Q Consensus 106 ~l~sL~~L~L~~c~~l~~--~---p~~~~~L~~L~L~~~~i~--~lp~~i~~l~~L~~L~l~~~---------~~l~~lp 169 (517)
.+++|+.|++++|. +.. + .....+|+.|++.++ +. .++.....+++|+.|++.+| .......
T Consensus 287 ~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l 364 (594)
T 2p1m_B 287 VCSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGL 364 (594)
T ss_dssp HHTTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHH
T ss_pred hhCCCCEEEccCCC-CCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHH
Confidence 46889999999987 432 1 124567899999887 43 23322345778888888432 2221111
Q ss_pred ccc-cCCCCCcEEEcCCC-CCc-CCccC-CCCCCCCEEEec--C----CCCCcc------hhhhhcCCCCCEEeccCCCC
Q 043008 170 TSI-CKFKSLVWLSLNND-LTA-IPQEI-GCLSSLECLNLG--G----NNFEGL------PASIKQISRLECLDLSYCNS 233 (517)
Q Consensus 170 ~~l-~~l~~L~~L~Ls~~-l~~-lp~~l-~~l~~L~~L~Ls--~----n~l~~l------p~~l~~l~~L~~L~L~~c~~ 233 (517)
..+ ..+++|+.|.+..+ +.. .+..+ ..+++|+.|+|+ + ++++.. +..+..+++|+.|+|++ .
T Consensus 365 ~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~--~ 442 (594)
T 2p1m_B 365 VSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG--L 442 (594)
T ss_dssp HHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS--S
T ss_pred HHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC--c
Confidence 122 24677777766432 211 11122 246778888887 3 455533 33356777888888865 3
Q ss_pred CCc--CC---CCCCCccEEecccccCcCcCCCCCchh-hhcchhhHHhhhcCCCCC---------cceeeeeEEeeeCCC
Q 043008 234 LQS--LP---ELPLHLEVLLATNCKRLQSLPEIPSCL-EELDASVLEKLSKHSFGE---------EYRIWSIKFNFTNCL 298 (517)
Q Consensus 234 l~~--lp---~l~~~L~~L~~~~c~~l~~l~~~~~~L-~~L~~l~~~~Ls~n~~~~---------~~~l~~l~~~~~nC~ 298 (517)
+.. ++ ...++|+.|++.+|. +. ...+..+ ..++.++.++|++|++++ ...++.+ ++.+|.
T Consensus 443 l~~~~~~~l~~~~~~L~~L~L~~~~-i~--~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L--~l~~~~ 517 (594)
T 2p1m_B 443 LTDKVFEYIGTYAKKMEMLSVAFAG-DS--DLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSL--WMSSCS 517 (594)
T ss_dssp CCHHHHHHHHHHCTTCCEEEEESCC-SS--HHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEE--EEESSC
T ss_pred ccHHHHHHHHHhchhccEeeccCCC-Cc--HHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEE--eeeCCC
Confidence 322 11 124567777776654 11 1111122 445666666777776641 1234444 777886
Q ss_pred C
Q 043008 299 K 299 (517)
Q Consensus 299 k 299 (517)
.
T Consensus 518 ~ 518 (594)
T 2p1m_B 518 V 518 (594)
T ss_dssp C
T ss_pred C
Confidence 5
No 124
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.35 E-value=6.3e-12 Score=116.09 Aligned_cols=119 Identities=13% Similarity=0.118 Sum_probs=57.0
Q ss_pred EEeccCCCCCccccccCCCCCCccEEEccCCCCCCCCC-CCCCCCCccEEeeccccCCcccCccccCCCCCCEEeccCCc
Q 043008 18 ELNLPYGHKVVQIWEGKKRAFKLKFINLSHSQCHIKIP-DPSETPNLERIDILNCTNPACVLSSITNFNHLSMLCFRHCK 96 (517)
Q Consensus 18 ~L~L~~n~~l~~l~~~~~~l~~L~~L~Ls~~~~l~~~p-~l~~l~~L~~L~L~~~~~l~~~p~si~~l~~L~~L~L~~~~ 96 (517)
.++++++ .++.+|.++. ++|++|+|++|.+ ..+| .+..+++|++|+|++|......+..|.++++|++|+|++|.
T Consensus 14 ~l~~~~~-~l~~ip~~~~--~~l~~L~L~~n~i-~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 14 VVRCSNK-GLKVLPKGIP--RDVTELYLDGNQF-TLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp EEECTTS-CCSSCCSCCC--TTCCEEECCSSCC-CSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEcCCC-CCCcCCCCCC--CCCCEEECCCCcC-chhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence 4455555 5555554332 3555555555542 2343 34555555555555554443333445555555555555554
Q ss_pred CccccCCCC-CCCCCcEEEEecCCCCCccCC-C---CCCCcEEEeecccC
Q 043008 97 NLRHFPNNL-HFVCPIIIDFSYCVNLTEFPQ-I---SGNIIDLILTETAI 141 (517)
Q Consensus 97 ~l~~lp~~~-~l~sL~~L~L~~c~~l~~~p~-~---~~~L~~L~L~~~~i 141 (517)
.....|..+ ++++|+.|+|++|. +..+|. . +.+|+.|++++|.+
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHGND-ISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred cCEeCHHHhCCCCCCCEEECCCCC-CCeeChhhhhcCccccEEEeCCCCe
Confidence 443333334 55555555555533 233332 1 23345555555554
No 125
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.34 E-value=5.7e-12 Score=116.18 Aligned_cols=118 Identities=14% Similarity=0.111 Sum_probs=102.2
Q ss_pred CCCCCCCCCCCCCCccEEeccCCCCCcccccc--CCCCCCccEEEccCCCCCCCCC-CCCCCCCccEEeeccccCCcccC
Q 043008 2 YPLRTLPSNFKPKNLVELNLPYGHKVVQIWEG--KKRAFKLKFINLSHSQCHIKIP-DPSETPNLERIDILNCTNPACVL 78 (517)
Q Consensus 2 ~pl~~lP~~f~~~~L~~L~L~~n~~l~~l~~~--~~~l~~L~~L~Ls~~~~l~~~p-~l~~l~~L~~L~L~~~~~l~~~p 78 (517)
..++++|..+ +.+|++|+|++| .+..++.. +..+++|++|+|++|.+....| .|.++++|++|+|++|......+
T Consensus 18 ~~l~~ip~~~-~~~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 95 (192)
T 1w8a_A 18 RGLKEIPRDI-PLHTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISN 95 (192)
T ss_dssp SCCSSCCSCC-CTTCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECS
T ss_pred CCcCcCccCC-CCCCCEEECCCC-cCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCH
Confidence 3577888876 449999999999 99988653 8899999999999999777667 48999999999999998777777
Q ss_pred ccccCCCCCCEEeccCCcCccccCCCC-CCCCCcEEEEecCCCC
Q 043008 79 SSITNFNHLSMLCFRHCKNLRHFPNNL-HFVCPIIIDFSYCVNL 121 (517)
Q Consensus 79 ~si~~l~~L~~L~L~~~~~l~~lp~~~-~l~sL~~L~L~~c~~l 121 (517)
..++.+++|++|+|++|......|..+ .+++|++|++++|...
T Consensus 96 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 96 KMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp SSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred HHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 779999999999999998888888888 8999999999987643
No 126
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.34 E-value=7.4e-13 Score=116.64 Aligned_cols=82 Identities=13% Similarity=0.153 Sum_probs=43.7
Q ss_pred CCCccEEeccCCCCCc--cccccCCCCCCccEEEccCCCCCCCCCCCCCCCCccEEeeccccCCcccCccccCCCCCCEE
Q 043008 13 PKNLVELNLPYGHKVV--QIWEGKKRAFKLKFINLSHSQCHIKIPDPSETPNLERIDILNCTNPACVLSSITNFNHLSML 90 (517)
Q Consensus 13 ~~~L~~L~L~~n~~l~--~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~~~~l~~~p~si~~l~~L~~L 90 (517)
+++|++|++++| .+. .+|..+..+++|++|++++|.+. .++.+..+++|++|+|++|.....+|..++.+++|++|
T Consensus 16 ~~~l~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 16 PSDVKELVLDNS-RSNEGKLEGLTDEFEELEFLSTINVGLT-SIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGGCSEEECTTC-BCBTTBCCSCCTTCTTCCEEECTTSCCC-CCTTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CccCeEEEccCC-cCChhHHHHHHhhcCCCcEEECcCCCCC-CchhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 355666666666 555 55555555666666666665532 22445555555555555554443344444445555555
Q ss_pred eccCCc
Q 043008 91 CFRHCK 96 (517)
Q Consensus 91 ~L~~~~ 96 (517)
++++|.
T Consensus 94 ~ls~N~ 99 (149)
T 2je0_A 94 NLSGNK 99 (149)
T ss_dssp ECTTSC
T ss_pred ECCCCc
Confidence 555543
No 127
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.32 E-value=3e-12 Score=112.69 Aligned_cols=83 Identities=20% Similarity=0.209 Sum_probs=53.5
Q ss_pred CCCCCCccEEEcccCcCCccccccccCCCCCcEEEcCCC-CCcCC--ccCCCCCCCCEEEecCCCCCcchh----hhhcC
Q 043008 148 TECLTNLQYLFLCSCKKLKRVSTSICKFKSLVWLSLNND-LTAIP--QEIGCLSSLECLNLGGNNFEGLPA----SIKQI 220 (517)
Q Consensus 148 i~~l~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~Ls~~-l~~lp--~~l~~l~~L~~L~Ls~n~l~~lp~----~l~~l 220 (517)
+..+++|+.|++++|.+.+.+|..+..+++|+.|++++| +..+| ..+..+++|++|++++|.++.+|. .+..+
T Consensus 60 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l 139 (149)
T 2je0_A 60 LPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLL 139 (149)
T ss_dssp CCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHC
T ss_pred hhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHC
Confidence 444555555555555544445555555555555555443 23333 557778888888888888887765 67888
Q ss_pred CCCCEEeccC
Q 043008 221 SRLECLDLSY 230 (517)
Q Consensus 221 ~~L~~L~L~~ 230 (517)
++|+.|++++
T Consensus 140 ~~L~~L~l~d 149 (149)
T 2je0_A 140 PQLTYLDGYD 149 (149)
T ss_dssp TTCCEETTBC
T ss_pred CCcccccCCC
Confidence 8888888763
No 128
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.32 E-value=2.7e-13 Score=150.31 Aligned_cols=175 Identities=16% Similarity=0.113 Sum_probs=97.7
Q ss_pred CCccccccCCCCCCccEEEccCCCCCCCCC-CCCCCCCccEEeeccccCCcccCccccCCCCCCEEeccCCcCccccCCC
Q 043008 26 KVVQIWEGKKRAFKLKFINLSHSQCHIKIP-DPSETPNLERIDILNCTNPACVLSSITNFNHLSMLCFRHCKNLRHFPNN 104 (517)
Q Consensus 26 ~l~~l~~~~~~l~~L~~L~Ls~~~~l~~~p-~l~~l~~L~~L~L~~~~~l~~~p~si~~l~~L~~L~L~~~~~l~~lp~~ 104 (517)
.+...+..+..+++|+.|+|++|.+. .+| .+..+++|++|+|++|... .+|..|+++++|++|+|++|... .+|..
T Consensus 212 ~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~ 288 (727)
T 4b8c_D 212 RMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAE 288 (727)
T ss_dssp ----------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSS
T ss_pred ceecChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChh
Confidence 33334566778888888888888854 566 4668888888888888544 78888888888888888888755 77887
Q ss_pred C-CCCCCcEEEEecCCCCCccCCCCC---CCcEEEeecccCc-ccCCcCCCCC-CccEEEcccCcCCccccccccCCCCC
Q 043008 105 L-HFVCPIIIDFSYCVNLTEFPQISG---NIIDLILTETAIE-EVPSSTECLT-NLQYLFLCSCKKLKRVSTSICKFKSL 178 (517)
Q Consensus 105 ~-~l~sL~~L~L~~c~~l~~~p~~~~---~L~~L~L~~~~i~-~lp~~i~~l~-~L~~L~l~~~~~l~~lp~~l~~l~~L 178 (517)
+ ++++|++|+|++| .++.+|..+. +|+.|+|++|.+. .+|..+..+. .+..|++++|.+.+.+|..+
T Consensus 289 ~~~l~~L~~L~L~~N-~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~l------ 361 (727)
T 4b8c_D 289 LGSCFQLKYFYFFDN-MVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHER------ 361 (727)
T ss_dssp GGGGTTCSEEECCSS-CCCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC-------
T ss_pred hcCCCCCCEEECCCC-CCCccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcccc------
Confidence 8 8888888888886 4567776554 4588888888887 3444443321 22236777887777776543
Q ss_pred cEEEcCCCC------CcCC----ccCCCCCCCCEEEecCCCC
Q 043008 179 VWLSLNNDL------TAIP----QEIGCLSSLECLNLGGNNF 210 (517)
Q Consensus 179 ~~L~Ls~~l------~~lp----~~l~~l~~L~~L~Ls~n~l 210 (517)
+.|+++.+. +.++ ..+..+..+....+++|-+
T Consensus 362 ~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil 403 (727)
T 4b8c_D 362 RFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTL 403 (727)
T ss_dssp ----------------------------------------CC
T ss_pred ceeEeecccccccccCCccccccchhhcccccceeeeecccc
Confidence 344444331 2222 2234455556666666654
No 129
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.29 E-value=1.8e-11 Score=113.01 Aligned_cols=120 Identities=23% Similarity=0.351 Sum_probs=94.8
Q ss_pred EEEEecCCCCCccCC-CCCCCcEEEeecccCcccCCcCCCCCCccEEEcccCcCCccccccccCCCCCcEEEcCCC-CCc
Q 043008 112 IIDFSYCVNLTEFPQ-ISGNIIDLILTETAIEEVPSSTECLTNLQYLFLCSCKKLKRVSTSICKFKSLVWLSLNND-LTA 189 (517)
Q Consensus 112 ~L~L~~c~~l~~~p~-~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~Ls~~-l~~ 189 (517)
.+++++ +.++.+|. ...+++.|++++|.++.+|..+..+++|+.|++++|.+.+..+..|.++++|+.|++++| +..
T Consensus 14 ~l~~~~-~~l~~ip~~~~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~ 92 (193)
T 2wfh_A 14 VVRCSN-KGLKVLPKGIPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRC 92 (193)
T ss_dssp EEECTT-SCCSSCCSCCCTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCB
T ss_pred EEEcCC-CCCCcCCCCCCCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCE
Confidence 455554 33555554 345678888888888888888889999999999999887777778889999999999775 455
Q ss_pred CCc-cCCCCCCCCEEEecCCCCCcchh-hhhcCCCCCEEeccCCC
Q 043008 190 IPQ-EIGCLSSLECLNLGGNNFEGLPA-SIKQISRLECLDLSYCN 232 (517)
Q Consensus 190 lp~-~l~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~L~~c~ 232 (517)
++. .+..+++|+.|+|++|+|+.+|. .+..+++|+.|+|++|+
T Consensus 93 i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 93 IPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred eCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCC
Confidence 554 58889999999999999998876 47788999999998754
No 130
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.28 E-value=2.8e-12 Score=116.39 Aligned_cols=127 Identities=13% Similarity=0.018 Sum_probs=70.2
Q ss_pred CCCCccEEeccCCCCCccccccCCCCCCccEEEccCCCCCCCCCCCCCCCCccEEeeccccCCcccCcc-ccCCCCCCEE
Q 043008 12 KPKNLVELNLPYGHKVVQIWEGKKRAFKLKFINLSHSQCHIKIPDPSETPNLERIDILNCTNPACVLSS-ITNFNHLSML 90 (517)
Q Consensus 12 ~~~~L~~L~L~~n~~l~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~~~~l~~~p~s-i~~l~~L~~L 90 (517)
++.+|++|++++| .+..++......++|++|+|++|.+. .++.+..+++|++|+|++|... .+|.. ++.+++|++|
T Consensus 17 ~~~~L~~L~l~~n-~l~~i~~~~~~~~~L~~L~Ls~N~l~-~~~~l~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L 93 (176)
T 1a9n_A 17 NAVRDRELDLRGY-KIPVIENLGATLDQFDAIDFSDNEIR-KLDGFPLLRRLKTLLVNNNRIC-RIGEGLDQALPDLTEL 93 (176)
T ss_dssp CTTSCEEEECTTS-CCCSCCCGGGGTTCCSEEECCSSCCC-EECCCCCCSSCCEEECCSSCCC-EECSCHHHHCTTCCEE
T ss_pred CcCCceEEEeeCC-CCchhHHhhhcCCCCCEEECCCCCCC-cccccccCCCCCEEECCCCccc-ccCcchhhcCCCCCEE
Confidence 5667777777777 66666432222336777777776633 3355666666666666666433 33333 3556666666
Q ss_pred eccCCcCccccCC--CC-CCCCCcEEEEecCCCCCccCCCCCCCcEEEeecccCcccCCc----CCCCCCccEEEcccCc
Q 043008 91 CFRHCKNLRHFPN--NL-HFVCPIIIDFSYCVNLTEFPQISGNIIDLILTETAIEEVPSS----TECLTNLQYLFLCSCK 163 (517)
Q Consensus 91 ~L~~~~~l~~lp~--~~-~l~sL~~L~L~~c~~l~~~p~~~~~L~~L~L~~~~i~~lp~~----i~~l~~L~~L~l~~~~ 163 (517)
++++|.. ..+|. .+ .+++| +.|++++|.+..+|.. +..+++|+.|++++|.
T Consensus 94 ~L~~N~i-~~~~~~~~l~~l~~L---------------------~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 94 ILTNNSL-VELGDLDPLASLKSL---------------------TYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp ECCSCCC-CCGGGGGGGGGCTTC---------------------CEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred ECCCCcC-CcchhhHhhhcCCCC---------------------CEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 6666543 23332 22 33333 4444444555555553 5666677777776664
No 131
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.26 E-value=1.1e-11 Score=112.39 Aligned_cols=102 Identities=17% Similarity=0.189 Sum_probs=75.4
Q ss_pred CCcEEEeecccCcccCCcCCCCCCccEEEcccCcCCccccccccCCCCCcEEEcCCC-CCcCCc--cCCCCCCCCEEEec
Q 043008 130 NIIDLILTETAIEEVPSSTECLTNLQYLFLCSCKKLKRVSTSICKFKSLVWLSLNND-LTAIPQ--EIGCLSSLECLNLG 206 (517)
Q Consensus 130 ~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~Ls~~-l~~lp~--~l~~l~~L~~L~Ls 206 (517)
+|+.|++++|.++.+ ..+..+++|+.|++++|.+.+..+..+..+++|+.|++++| +..+|. .+..+++|+.|+++
T Consensus 43 ~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~ 121 (176)
T 1a9n_A 43 QFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCIL 121 (176)
T ss_dssp CCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECC
T ss_pred CCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEec
Confidence 455666666666666 46777888888888888665443344477888888888664 466666 67788889999999
Q ss_pred CCCCCcchhh----hhcCCCCCEEeccCCC
Q 043008 207 GNNFEGLPAS----IKQISRLECLDLSYCN 232 (517)
Q Consensus 207 ~n~l~~lp~~----l~~l~~L~~L~L~~c~ 232 (517)
+|.+..+|.. +..+++|+.|++++|+
T Consensus 122 ~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 122 RNPVTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp SSGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred CCCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 9988888874 8888889998888754
No 132
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.24 E-value=8.4e-11 Score=106.58 Aligned_cols=129 Identities=11% Similarity=0.054 Sum_probs=83.8
Q ss_pred ccEEeccCCCCCccccccCCCCCCccEEEccCCCCCCCCCC-CCCCCCccEEeeccccCCcccCccccCCCCCCEEeccC
Q 043008 16 LVELNLPYGHKVVQIWEGKKRAFKLKFINLSHSQCHIKIPD-PSETPNLERIDILNCTNPACVLSSITNFNHLSMLCFRH 94 (517)
Q Consensus 16 L~~L~L~~n~~l~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~~~~l~~~p~si~~l~~L~~L~L~~ 94 (517)
.+.++++++ .++.+|..+. ++|+.|++++|.+....+. +..+++|++|++++|......+..++.+++|++|++++
T Consensus 9 ~~~l~~~~~-~l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSK-GLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSS-CCSSCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCC-CCccCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 467788888 7888875543 6888888888875433333 67788888888888755444444567788888888888
Q ss_pred CcCccccCCCC-CCCCCcEEEEecCCCCCccCCCCCCCcEEEeecccCcccCCc-CCCCCCccEEEcccCcCCccc
Q 043008 95 CKNLRHFPNNL-HFVCPIIIDFSYCVNLTEFPQISGNIIDLILTETAIEEVPSS-TECLTNLQYLFLCSCKKLKRV 168 (517)
Q Consensus 95 ~~~l~~lp~~~-~l~sL~~L~L~~c~~l~~~p~~~~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~l~~~~~l~~l 168 (517)
|......+..+ .+++|++|++++| .++.+|.. +..+++|+.|++++|.+....
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N---------------------~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~ 140 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTN---------------------QLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 140 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSS---------------------CCSCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred CCccccCHHHhhCCcccCEEECcCC---------------------cceEeCHHHhcCCcccCEEEecCCCeeccC
Confidence 76543333333 5666666666553 34444443 356777777777777655443
No 133
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.20 E-value=1.3e-10 Score=105.36 Aligned_cols=117 Identities=13% Similarity=0.086 Sum_probs=94.2
Q ss_pred CCCCCCCCCCCCCccEEeccCCCCCccccc-cCCCCCCccEEEccCCCCCCCCCC-CCCCCCccEEeeccccCCcccCcc
Q 043008 3 PLRTLPSNFKPKNLVELNLPYGHKVVQIWE-GKKRAFKLKFINLSHSQCHIKIPD-PSETPNLERIDILNCTNPACVLSS 80 (517)
Q Consensus 3 pl~~lP~~f~~~~L~~L~L~~n~~l~~l~~-~~~~l~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~~~~l~~~p~s 80 (517)
.++.+|..+ +++|++|++++| .++.++. .+..+++|++|+|++|.+....+. +..+++|++|+|++|......+..
T Consensus 18 ~l~~~p~~~-~~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~ 95 (177)
T 2o6r_A 18 GLTSVPTGI-PSSATRLELESN-KLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGV 95 (177)
T ss_dssp CCSSCCTTC-CTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred CCccCCCCC-CCCCcEEEeCCC-cccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHH
Confidence 466778655 579999999999 8998865 468999999999999985543333 789999999999999766555556
Q ss_pred ccCCCCCCEEeccCCcCccccCCC-C-CCCCCcEEEEecCCCCC
Q 043008 81 ITNFNHLSMLCFRHCKNLRHFPNN-L-HFVCPIIIDFSYCVNLT 122 (517)
Q Consensus 81 i~~l~~L~~L~L~~~~~l~~lp~~-~-~l~sL~~L~L~~c~~l~ 122 (517)
++.+++|++|++++|... .+|.. + .+++|+.|++++|....
T Consensus 96 ~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 96 FDKLTQLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp TTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred hhCCcccCEEECcCCcce-EeCHHHhcCCcccCEEEecCCCeec
Confidence 799999999999999665 55554 4 78999999999976443
No 134
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.11 E-value=1.1e-10 Score=116.94 Aligned_cols=211 Identities=15% Similarity=0.131 Sum_probs=129.6
Q ss_pred CCccEEeccCCCCCccccccCCC-CCCccEEEccCCCCCC-------------------CCC--CCCC--------CCCc
Q 043008 14 KNLVELNLPYGHKVVQIWEGKKR-AFKLKFINLSHSQCHI-------------------KIP--DPSE--------TPNL 63 (517)
Q Consensus 14 ~~L~~L~L~~n~~l~~l~~~~~~-l~~L~~L~Ls~~~~l~-------------------~~p--~l~~--------l~~L 63 (517)
.+|++|.++++-....+ ..+.. +++|+.|||++|.+.. .+| .|.+ +++|
T Consensus 25 ~~l~~L~l~g~i~~~~~-~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L 103 (329)
T 3sb4_A 25 NSITHLTLTGKLNAEDF-RHLRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTL 103 (329)
T ss_dssp HHCSEEEEEEEECHHHH-HHHHHSCTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTC
T ss_pred CceeEEEEeccccHHHH-HHHHHhhccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCC
Confidence 45666666654111111 11122 6667777777766430 344 2667 8888
Q ss_pred cEEeeccccCCcccCccccCCCCCCEEeccCCcCccccCCCC-CCCCCcEEEEe-----------------cCCCCC---
Q 043008 64 ERIDILNCTNPACVLSSITNFNHLSMLCFRHCKNLRHFPNNL-HFVCPIIIDFS-----------------YCVNLT--- 122 (517)
Q Consensus 64 ~~L~L~~~~~l~~~p~si~~l~~L~~L~L~~~~~l~~lp~~~-~l~sL~~L~L~-----------------~c~~l~--- 122 (517)
+.|+|.+ .....-+..|.++++|+.|++.+|.....-+..+ ++.++..+.+. +|..++
T Consensus 104 ~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i 182 (329)
T 3sb4_A 104 EKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTI 182 (329)
T ss_dssp CC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEE
T ss_pred cEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeE
Confidence 8888887 3433444568888888888888876554444444 44444444322 222222
Q ss_pred ------ccC-------------------------------CCCCCCcEEEeecccCcccCCc-CCCCCCccEEEcccCcC
Q 043008 123 ------EFP-------------------------------QISGNIIDLILTETAIEEVPSS-TECLTNLQYLFLCSCKK 164 (517)
Q Consensus 123 ------~~p-------------------------------~~~~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~l~~~~~ 164 (517)
.++ ....+|+.++|.+|.++.+|.. |..+++|+.|++.+| .
T Consensus 183 ~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i 261 (329)
T 3sb4_A 183 QVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-L 261 (329)
T ss_dssp EECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-C
T ss_pred EecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-c
Confidence 000 0134677788887778777764 667778888888776 4
Q ss_pred CccccccccCCCCCc-EEEcCCCCCcCC-ccCCCCCCCCEEEecCCCCCcchh-hhhcCCCCCEEe
Q 043008 165 LKRVSTSICKFKSLV-WLSLNNDLTAIP-QEIGCLSSLECLNLGGNNFEGLPA-SIKQISRLECLD 227 (517)
Q Consensus 165 l~~lp~~l~~l~~L~-~L~Ls~~l~~lp-~~l~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~ 227 (517)
...-+..|.++++|+ .+++.+++..++ ..|.++++|+.+++++|+++.++. .+.++++|+.+.
T Consensus 262 ~~I~~~aF~~~~~L~~~l~l~~~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 262 KTIGQRVFSNCGRLAGTLELPASVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp CEECTTTTTTCTTCCEEEEECTTCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred ceehHHHhhCChhccEEEEEcccceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence 444445677788887 888877777765 457778888888888888887764 677777777765
No 135
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.10 E-value=7.3e-09 Score=106.52 Aligned_cols=215 Identities=10% Similarity=0.092 Sum_probs=148.4
Q ss_pred CCCCCCC-CCCCCccEEeccCCCCCcccc-ccCCCCCCccEEEccCCCCCCCCC--CCCCCCCccEEeeccccCCcccCc
Q 043008 4 LRTLPSN-FKPKNLVELNLPYGHKVVQIW-EGKKRAFKLKFINLSHSQCHIKIP--DPSETPNLERIDILNCTNPACVLS 79 (517)
Q Consensus 4 l~~lP~~-f~~~~L~~L~L~~n~~l~~l~-~~~~~l~~L~~L~Ls~~~~l~~~p--~l~~l~~L~~L~L~~~~~l~~~p~ 79 (517)
++.++.. |.-.+|+.+.++.+ ++.+. ..|.+ .+|+.++|..+ +..++ .|.++++|+.+++.+| .+..++.
T Consensus 124 i~~I~~~aF~~~~L~~i~l~~~--i~~I~~~aF~~-~~L~~i~lp~~--l~~I~~~aF~~c~~L~~l~l~~n-~l~~I~~ 197 (401)
T 4fdw_A 124 VKSIPKDAFRNSQIAKVVLNEG--LKSIGDMAFFN-STVQEIVFPST--LEQLKEDIFYYCYNLKKADLSKT-KITKLPA 197 (401)
T ss_dssp CCEECTTTTTTCCCSEEECCTT--CCEECTTTTTT-CCCCEEECCTT--CCEECSSTTTTCTTCCEEECTTS-CCSEECT
T ss_pred cCEehHhhcccCCccEEEeCCC--ccEECHHhcCC-CCceEEEeCCC--ccEehHHHhhCcccCCeeecCCC-cceEech
Confidence 3445443 53347888888765 77774 44555 46888888863 45555 3888888999998876 3445555
Q ss_pred cccCCCCCCEEeccCCcCccccCCC-C-CCCCCcEEEEecCCCCCccCCC-C--CCCcEEEeecccCcccC-CcCCCCCC
Q 043008 80 SITNFNHLSMLCFRHCKNLRHFPNN-L-HFVCPIIIDFSYCVNLTEFPQI-S--GNIIDLILTETAIEEVP-SSTECLTN 153 (517)
Q Consensus 80 si~~l~~L~~L~L~~~~~l~~lp~~-~-~l~sL~~L~L~~c~~l~~~p~~-~--~~L~~L~L~~~~i~~lp-~~i~~l~~ 153 (517)
......+|+.+.+..+ +..++.. + ++++|+.+++..+ ++.++.. + .+|+.+.+. +.++.++ ..|.++++
T Consensus 198 ~aF~~~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~l~~~--l~~I~~~aF~~~~L~~i~lp-~~i~~I~~~aF~~c~~ 272 (401)
T 4fdw_A 198 STFVYAGIEEVLLPVT--LKEIGSQAFLKTSQLKTIEIPEN--VSTIGQEAFRESGITTVKLP-NGVTNIASRAFYYCPE 272 (401)
T ss_dssp TTTTTCCCSEEECCTT--CCEECTTTTTTCTTCCCEECCTT--CCEECTTTTTTCCCSEEEEE-TTCCEECTTTTTTCTT
T ss_pred hhEeecccCEEEeCCc--hheehhhHhhCCCCCCEEecCCC--ccCccccccccCCccEEEeC-CCccEEChhHhhCCCC
Confidence 4444688888888753 5555544 3 8888888888763 4555432 1 457888884 4566664 45778889
Q ss_pred ccEEEcccCcCC-----ccccccccCCCCCcEEEcCCCCCcCCc-cCCCCCCCCEEEecCCCCCcch-hhhhcCCCCCEE
Q 043008 154 LQYLFLCSCKKL-----KRVSTSICKFKSLVWLSLNNDLTAIPQ-EIGCLSSLECLNLGGNNFEGLP-ASIKQISRLECL 226 (517)
Q Consensus 154 L~~L~l~~~~~l-----~~lp~~l~~l~~L~~L~Ls~~l~~lp~-~l~~l~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L 226 (517)
|+.+++.++... ...+..|.++++|+.+.+.+++..++. .|.++++|+.+.|.. +++.++ ..+.++ +|+.+
T Consensus 273 L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~i~~I~~~aF~~c~~L~~l~lp~-~l~~I~~~aF~~~-~L~~l 350 (401)
T 4fdw_A 273 LAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPESIRILGQGLLGGNRKVTQLTIPA-NVTQINFSAFNNT-GIKEV 350 (401)
T ss_dssp CCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTTCCEECTTTTTTCCSCCEEEECT-TCCEECTTSSSSS-CCCEE
T ss_pred CCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCceEEEhhhhhcCCCCccEEEECc-cccEEcHHhCCCC-CCCEE
Confidence 999998876443 234466888889999999887877765 477888999999954 477664 467778 89999
Q ss_pred eccCC
Q 043008 227 DLSYC 231 (517)
Q Consensus 227 ~L~~c 231 (517)
.+.++
T Consensus 351 ~l~~n 355 (401)
T 4fdw_A 351 KVEGT 355 (401)
T ss_dssp EECCS
T ss_pred EEcCC
Confidence 99874
No 136
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.07 E-value=6.8e-10 Score=100.08 Aligned_cols=103 Identities=11% Similarity=0.009 Sum_probs=81.2
Q ss_pred CccEEeccCCCCCccccccCCCCCCccEEEccCCCCCCCCCC-CCCCCCccEEeeccccCCcccCccccCCCCCCEEecc
Q 043008 15 NLVELNLPYGHKVVQIWEGKKRAFKLKFINLSHSQCHIKIPD-PSETPNLERIDILNCTNPACVLSSITNFNHLSMLCFR 93 (517)
Q Consensus 15 ~L~~L~L~~n~~l~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~~~~l~~~p~si~~l~~L~~L~L~ 93 (517)
..++|+++++ .++.+|..+. ++|++|+|++|.+....|. |.++++|++|+|++|......+..+..+++|++|+|+
T Consensus 10 ~~~~l~~s~n-~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 10 SGTTVDCSGK-SLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp ETTEEECTTS-CCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEeCCC-CcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 3578999999 9999987763 8899999999986655564 8899999999999986654444557899999999999
Q ss_pred CCcCccccCCCC-CCCCCcEEEEecCCC
Q 043008 94 HCKNLRHFPNNL-HFVCPIIIDFSYCVN 120 (517)
Q Consensus 94 ~~~~l~~lp~~~-~l~sL~~L~L~~c~~ 120 (517)
+|......+..+ .+++|+.|+|++|..
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 114 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNPW 114 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCCC
Confidence 986554444446 888888888888653
No 137
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.07 E-value=2.4e-12 Score=119.19 Aligned_cols=124 Identities=19% Similarity=0.273 Sum_probs=66.5
Q ss_pred cCccccCCCCCCEEeccCCcCccccCCCC-CCCCCcEEEEecCCCCCccCCCC---CCCcEEEeecccCcccCCcCCCCC
Q 043008 77 VLSSITNFNHLSMLCFRHCKNLRHFPNNL-HFVCPIIIDFSYCVNLTEFPQIS---GNIIDLILTETAIEEVPSSTECLT 152 (517)
Q Consensus 77 ~p~si~~l~~L~~L~L~~~~~l~~lp~~~-~l~sL~~L~L~~c~~l~~~p~~~---~~L~~L~L~~~~i~~lp~~i~~l~ 152 (517)
+|..++.+++|++|++++|... .+| .+ .+++|+.|++++|. +..+|..+ .+|+.|++++|.++.+| .+..++
T Consensus 40 l~~~~~~l~~L~~L~ls~n~l~-~l~-~~~~l~~L~~L~l~~n~-l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~ 115 (198)
T 1ds9_A 40 MDATLSTLKACKHLALSTNNIE-KIS-SLSGMENLRILSLGRNL-IKKIENLDAVADTLEELWISYNQIASLS-GIEKLV 115 (198)
T ss_dssp CHHHHHHTTTCSEEECSEEEES-CCC-CHHHHTTCCEEEEEEEE-ECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHH
T ss_pred hhHHHhcCCCCCEEECCCCCCc-ccc-ccccCCCCCEEECCCCC-cccccchhhcCCcCCEEECcCCcCCcCC-ccccCC
Confidence 3335666666666666666433 355 34 56666666666543 22333322 23344444445444444 344444
Q ss_pred CccEEEcccCcCCccccccccCCCCCcEEEcCCCCCcCCc--cCCCCCCCCEEEecCCCCCcchh-----------hhhc
Q 043008 153 NLQYLFLCSCKKLKRVSTSICKFKSLVWLSLNNDLTAIPQ--EIGCLSSLECLNLGGNNFEGLPA-----------SIKQ 219 (517)
Q Consensus 153 ~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~Ls~~l~~lp~--~l~~l~~L~~L~Ls~n~l~~lp~-----------~l~~ 219 (517)
+|+.|++++|.+ ..++. .+..+++|++|++++|.+...+. .+..
T Consensus 116 ~L~~L~l~~N~i-----------------------~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~ 172 (198)
T 1ds9_A 116 NLRVLYMSNNKI-----------------------TNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKR 172 (198)
T ss_dssp HSSEEEESEEEC-----------------------CCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHH
T ss_pred CCCEEECCCCcC-----------------------CchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHh
Confidence 555555554432 22222 45667777778888877765322 2667
Q ss_pred CCCCCEEe
Q 043008 220 ISRLECLD 227 (517)
Q Consensus 220 l~~L~~L~ 227 (517)
+++|+.|+
T Consensus 173 l~~L~~Ld 180 (198)
T 1ds9_A 173 LPNLKKLD 180 (198)
T ss_dssp CSSCSEEC
T ss_pred CCCcEEEC
Confidence 77777776
No 138
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.05 E-value=8.4e-10 Score=99.92 Aligned_cols=99 Identities=23% Similarity=0.289 Sum_probs=76.9
Q ss_pred cEEEeecccCcccCCcCCCCCCccEEEcccCcCCccccccccCCCCCcEEEcCCC-CCcCCcc-CCCCCCCCEEEecCCC
Q 043008 132 IDLILTETAIEEVPSSTECLTNLQYLFLCSCKKLKRVSTSICKFKSLVWLSLNND-LTAIPQE-IGCLSSLECLNLGGNN 209 (517)
Q Consensus 132 ~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~Ls~~-l~~lp~~-l~~l~~L~~L~Ls~n~ 209 (517)
+.++++++.+..+|..+. ++|+.|++++|.+.+..|..+.++++|+.|+|++| +..+|.. +..+++|++|+|++|+
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 567777777777777654 77888888888777766777788888888888664 5667665 5788999999999999
Q ss_pred CCcchhh-hhcCCCCCEEeccCCC
Q 043008 210 FEGLPAS-IKQISRLECLDLSYCN 232 (517)
Q Consensus 210 l~~lp~~-l~~l~~L~~L~L~~c~ 232 (517)
|+.+|.. +..+++|+.|+|++|+
T Consensus 93 l~~l~~~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 93 LKSIPRGAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSC
T ss_pred cceeCHHHhccccCCCEEEeCCCC
Confidence 9988765 8889999999998743
No 139
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.04 E-value=1.1e-09 Score=99.06 Aligned_cols=99 Identities=11% Similarity=0.054 Sum_probs=78.3
Q ss_pred ccEEeccCCCCCccccccCCCCCCccEEEccCCCCCCCCCC-CCCCCCccEEeeccccCCcccCc-cccCCCCCCEEecc
Q 043008 16 LVELNLPYGHKVVQIWEGKKRAFKLKFINLSHSQCHIKIPD-PSETPNLERIDILNCTNPACVLS-SITNFNHLSMLCFR 93 (517)
Q Consensus 16 L~~L~L~~n~~l~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~~~~l~~~p~-si~~l~~L~~L~L~ 93 (517)
-+.++++++ .++.+|..+. ++|++|+|++|.+....|. |.++++|++|+|++|... .+|. .+..+++|++|+|+
T Consensus 14 ~~~l~~~~n-~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~ 89 (174)
T 2r9u_A 14 QTLVNCQNI-RLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLT-AIPTGVFDKLTQLTQLDLN 89 (174)
T ss_dssp SSEEECCSS-CCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECC
T ss_pred CcEEEeCCC-CCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCC-ccChhHhCCcchhhEEECC
Confidence 368899999 8999988764 8999999999986655564 889999999999998554 4554 46889999999999
Q ss_pred CCcCccccCCC-C-CCCCCcEEEEecCC
Q 043008 94 HCKNLRHFPNN-L-HFVCPIIIDFSYCV 119 (517)
Q Consensus 94 ~~~~l~~lp~~-~-~l~sL~~L~L~~c~ 119 (517)
+|... .+|.. + .+++|+.|+|++|.
T Consensus 90 ~N~l~-~l~~~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 90 DNHLK-SIPRGAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp SSCCC-CCCTTTTTTCTTCSEEECCSSC
T ss_pred CCccc-eeCHHHhccccCCCEEEeCCCC
Confidence 98655 45544 5 78888888888864
No 140
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.02 E-value=1.2e-09 Score=98.42 Aligned_cols=99 Identities=22% Similarity=0.329 Sum_probs=73.8
Q ss_pred cEEEeecccCcccCCcCCCCCCccEEEcccCcCCccccccccCCCCCcEEEcCCC-CCcCCcc-CCCCCCCCEEEecCCC
Q 043008 132 IDLILTETAIEEVPSSTECLTNLQYLFLCSCKKLKRVSTSICKFKSLVWLSLNND-LTAIPQE-IGCLSSLECLNLGGNN 209 (517)
Q Consensus 132 ~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~Ls~~-l~~lp~~-l~~l~~L~~L~Ls~n~ 209 (517)
+.++++++.++.+|..+. ++|+.|++++|.+.+..|..+.++++|+.|++++| +..+|.. +..+++|++|+|++|+
T Consensus 12 ~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~ 89 (170)
T 3g39_A 12 TTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 89 (170)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCc
Confidence 566777777777776553 67777777777776666777777777777777654 4566554 5788888888888888
Q ss_pred CCcchh-hhhcCCCCCEEeccCCC
Q 043008 210 FEGLPA-SIKQISRLECLDLSYCN 232 (517)
Q Consensus 210 l~~lp~-~l~~l~~L~~L~L~~c~ 232 (517)
|+.+|. .+..+++|+.|+|++|+
T Consensus 90 l~~~~~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 90 LKSIPRGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cCEeCHHHhcCCCCCCEEEeCCCC
Confidence 888775 47888888888888753
No 141
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.99 E-value=3e-12 Score=118.52 Aligned_cols=122 Identities=13% Similarity=0.078 Sum_probs=66.3
Q ss_pred CCCCCCccEEeeccccCCcccCccccCCCCCCEEeccCCcCccccCCCC-CCCCCcEEEEecCCCCCccCC--CCCCCcE
Q 043008 57 PSETPNLERIDILNCTNPACVLSSITNFNHLSMLCFRHCKNLRHFPNNL-HFVCPIIIDFSYCVNLTEFPQ--ISGNIID 133 (517)
Q Consensus 57 l~~l~~L~~L~L~~~~~l~~~p~si~~l~~L~~L~L~~~~~l~~lp~~~-~l~sL~~L~L~~c~~l~~~p~--~~~~L~~ 133 (517)
+..+++|++|+|++|.. ..+| .+..+++|++|++++|... .+|..+ .+++|+.|++++|. +..+|. .+.+|+.
T Consensus 44 ~~~l~~L~~L~ls~n~l-~~l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~-l~~l~~~~~l~~L~~ 119 (198)
T 1ds9_A 44 LSTLKACKHLALSTNNI-EKIS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQ-IASLSGIEKLVNLRV 119 (198)
T ss_dssp HHHTTTCSEEECSEEEE-SCCC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEE-CCCHHHHHHHHHSSE
T ss_pred HhcCCCCCEEECCCCCC-cccc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCc-CCcCCccccCCCCCE
Confidence 33444455555544422 2233 4444455555555554322 344333 34555555555542 333332 1234577
Q ss_pred EEeecccCcccCC--cCCCCCCccEEEcccCcCCcccccc----------ccCCCCCcEEE
Q 043008 134 LILTETAIEEVPS--STECLTNLQYLFLCSCKKLKRVSTS----------ICKFKSLVWLS 182 (517)
Q Consensus 134 L~L~~~~i~~lp~--~i~~l~~L~~L~l~~~~~l~~lp~~----------l~~l~~L~~L~ 182 (517)
|++++|.+..++. .+..+++|+.|++++|.+.+..|.. +..+++|+.|+
T Consensus 120 L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 120 LYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp EEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred EECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 7777777776654 6778889999999988766554432 45566665554
No 142
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.98 E-value=3.2e-08 Score=101.74 Aligned_cols=216 Identities=9% Similarity=0.071 Sum_probs=159.7
Q ss_pred CCCCCCC-CCCCCccEEeccCCCCCcccc-ccCCCCCCccEEEccCCCCCCCCCC--CCCCCCccEEeeccccCCcccCc
Q 043008 4 LRTLPSN-FKPKNLVELNLPYGHKVVQIW-EGKKRAFKLKFINLSHSQCHIKIPD--PSETPNLERIDILNCTNPACVLS 79 (517)
Q Consensus 4 l~~lP~~-f~~~~L~~L~L~~n~~l~~l~-~~~~~l~~L~~L~Ls~~~~l~~~p~--l~~l~~L~~L~L~~~~~l~~~p~ 79 (517)
+++++.. |.-.+|+.+.++. .++.+. ..|.++.+|+.++|++|. +..++. |. ..+|+.+.|..+ ....-..
T Consensus 146 i~~I~~~aF~~~~L~~i~lp~--~l~~I~~~aF~~c~~L~~l~l~~n~-l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~ 220 (401)
T 4fdw_A 146 LKSIGDMAFFNSTVQEIVFPS--TLEQLKEDIFYYCYNLKKADLSKTK-ITKLPASTFV-YAGIEEVLLPVT-LKEIGSQ 220 (401)
T ss_dssp CCEECTTTTTTCCCCEEECCT--TCCEECSSTTTTCTTCCEEECTTSC-CSEECTTTTT-TCCCSEEECCTT-CCEECTT
T ss_pred ccEECHHhcCCCCceEEEeCC--CccEehHHHhhCcccCCeeecCCCc-ceEechhhEe-ecccCEEEeCCc-hheehhh
Confidence 4555554 6445799999986 588884 678899999999999987 556663 55 589999999854 3333456
Q ss_pred cccCCCCCCEEeccCCcCccccCCCC-CCCCCcEEEEecCCCCCccCCC----CCCCcEEEeecccCc-----ccC-CcC
Q 043008 80 SITNFNHLSMLCFRHCKNLRHFPNNL-HFVCPIIIDFSYCVNLTEFPQI----SGNIIDLILTETAIE-----EVP-SST 148 (517)
Q Consensus 80 si~~l~~L~~L~L~~~~~l~~lp~~~-~l~sL~~L~L~~c~~l~~~p~~----~~~L~~L~L~~~~i~-----~lp-~~i 148 (517)
.|.++++|+.+++..+ +..++... .-.+|+.+.+.+ .++.++.. ..+|+.+.+.++.+. .++ ..|
T Consensus 221 aF~~~~~L~~l~l~~~--l~~I~~~aF~~~~L~~i~lp~--~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF 296 (401)
T 4fdw_A 221 AFLKTSQLKTIEIPEN--VSTIGQEAFRESGITTVKLPN--GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCL 296 (401)
T ss_dssp TTTTCTTCCCEECCTT--CCEECTTTTTTCCCSEEEEET--TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTT
T ss_pred HhhCCCCCCEEecCCC--ccCccccccccCCccEEEeCC--CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHh
Confidence 7889999999999874 45555544 448899999964 45666532 356899999888765 444 457
Q ss_pred CCCCCccEEEcccCcCCccccccccCCCCCcEEEcCCCCCcCCc-cCCCCCCCCEEEecCCCCCcchh-hhhcCC-CCCE
Q 043008 149 ECLTNLQYLFLCSCKKLKRVSTSICKFKSLVWLSLNNDLTAIPQ-EIGCLSSLECLNLGGNNFEGLPA-SIKQIS-RLEC 225 (517)
Q Consensus 149 ~~l~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~Ls~~l~~lp~-~l~~l~~L~~L~Ls~n~l~~lp~-~l~~l~-~L~~ 225 (517)
..+++|+.+.+.++ ....-...|.++++|+.+.+..++..+.. +|.++ +|+.+++.+|.+..++. .+..++ .++.
T Consensus 297 ~~c~~L~~l~l~~~-i~~I~~~aF~~c~~L~~l~lp~~l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~ 374 (401)
T 4fdw_A 297 EGCPKLARFEIPES-IRILGQGLLGGNRKVTQLTIPANVTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITV 374 (401)
T ss_dssp TTCTTCCEECCCTT-CCEECTTTTTTCCSCCEEEECTTCCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCE
T ss_pred hCCccCCeEEeCCc-eEEEhhhhhcCCCCccEEEECccccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccE
Confidence 88999999999853 44444567889999999999888888765 58888 99999999998887653 344443 5556
Q ss_pred EeccC
Q 043008 226 LDLSY 230 (517)
Q Consensus 226 L~L~~ 230 (517)
|.+..
T Consensus 375 l~vp~ 379 (401)
T 4fdw_A 375 IRVPA 379 (401)
T ss_dssp EEECG
T ss_pred EEeCH
Confidence 65543
No 143
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.74 E-value=4.2e-10 Score=114.63 Aligned_cols=104 Identities=16% Similarity=0.100 Sum_probs=68.1
Q ss_pred CCCcEEEeecccCcc-----cCCcC-CCCCCccEEEcccCcCCc----cccccccCCCCCcEEEcCCCC------CcCCc
Q 043008 129 GNIIDLILTETAIEE-----VPSST-ECLTNLQYLFLCSCKKLK----RVSTSICKFKSLVWLSLNNDL------TAIPQ 192 (517)
Q Consensus 129 ~~L~~L~L~~~~i~~-----lp~~i-~~l~~L~~L~l~~~~~l~----~lp~~l~~l~~L~~L~Ls~~l------~~lp~ 192 (517)
.+|+.|+|++|.+.. +...+ ...++|+.|++++|.+.. .++..+...++|++|+|++|. ..++.
T Consensus 126 ~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~ 205 (372)
T 3un9_A 126 LRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAA 205 (372)
T ss_dssp HTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHH
T ss_pred HhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHH
Confidence 345566666665542 11112 235677777777776533 244445667778888887653 23455
Q ss_pred cCCCCCCCCEEEecCCCCCc-----chhhhhcCCCCCEEeccCCC
Q 043008 193 EIGCLSSLECLNLGGNNFEG-----LPASIKQISRLECLDLSYCN 232 (517)
Q Consensus 193 ~l~~l~~L~~L~Ls~n~l~~-----lp~~l~~l~~L~~L~L~~c~ 232 (517)
.+...++|++|+|++|.|+. ++..+...++|+.|+|++|.
T Consensus 206 ~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 206 QLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNE 250 (372)
T ss_dssp HGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSS
T ss_pred HHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCC
Confidence 56677889999999998874 45667778899999999854
No 144
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.74 E-value=2.2e-08 Score=100.55 Aligned_cols=98 Identities=21% Similarity=0.127 Sum_probs=64.6
Q ss_pred EEEeecc-cCcccCCcCCCCCCccEEEccc-CcCCccccccccCCCCCcEEEcCCC-CCcCCc-cCCCCCCCCEEEecCC
Q 043008 133 DLILTET-AIEEVPSSTECLTNLQYLFLCS-CKKLKRVSTSICKFKSLVWLSLNND-LTAIPQ-EIGCLSSLECLNLGGN 208 (517)
Q Consensus 133 ~L~L~~~-~i~~lp~~i~~l~~L~~L~l~~-~~~l~~lp~~l~~l~~L~~L~Ls~~-l~~lp~-~l~~l~~L~~L~Ls~n 208 (517)
.++.+++ +++.+|. +..+++|+.|+|++ |.+.+..+..|.++++|+.|+|++| +..++. .|..+++|+.|+|++|
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 3455555 6677777 77777777777775 6555555566777777777777654 344433 4677777778888888
Q ss_pred CCCcchhhhhcCCCCCEEeccCC
Q 043008 209 NFEGLPASIKQISRLECLDLSYC 231 (517)
Q Consensus 209 ~l~~lp~~l~~l~~L~~L~L~~c 231 (517)
+|+.+|..+.....|+.|+|.+|
T Consensus 91 ~l~~~~~~~~~~~~L~~l~l~~N 113 (347)
T 2ifg_A 91 ALESLSWKTVQGLSLQELVLSGN 113 (347)
T ss_dssp CCSCCCSTTTCSCCCCEEECCSS
T ss_pred ccceeCHHHcccCCceEEEeeCC
Confidence 77777755444334777777763
No 145
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.68 E-value=4.8e-08 Score=98.09 Aligned_cols=99 Identities=10% Similarity=-0.034 Sum_probs=70.6
Q ss_pred EEeccCCCCCccccccCCCCCCccEEEccC-CCCCCCCC--CCCCCCCccEEeeccccCCcccCccccCCCCCCEEeccC
Q 043008 18 ELNLPYGHKVVQIWEGKKRAFKLKFINLSH-SQCHIKIP--DPSETPNLERIDILNCTNPACVLSSITNFNHLSMLCFRH 94 (517)
Q Consensus 18 ~L~L~~n~~l~~l~~~~~~l~~L~~L~Ls~-~~~l~~~p--~l~~l~~L~~L~L~~~~~l~~~p~si~~l~~L~~L~L~~ 94 (517)
.++++++..+..+|. +..+.+|+.|+|++ |.+ ..+| .|.++++|+.|+|++|......|..|+++++|++|+|++
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l-~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHL-QHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSC-CEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCC-CCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 456666436788888 88888888888886 664 4444 388888888888888876666666788888888888888
Q ss_pred CcCccccCCCC-CCCCCcEEEEecCC
Q 043008 95 CKNLRHFPNNL-HFVCPIIIDFSYCV 119 (517)
Q Consensus 95 ~~~l~~lp~~~-~l~sL~~L~L~~c~ 119 (517)
|... .+|..+ ...+|+.|+|.+|.
T Consensus 90 N~l~-~~~~~~~~~~~L~~l~l~~N~ 114 (347)
T 2ifg_A 90 NALE-SLSWKTVQGLSLQELVLSGNP 114 (347)
T ss_dssp SCCS-CCCSTTTCSCCCCEEECCSSC
T ss_pred Cccc-eeCHHHcccCCceEEEeeCCC
Confidence 7654 455443 33337777776654
No 146
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.58 E-value=8.8e-10 Score=112.27 Aligned_cols=159 Identities=14% Similarity=0.056 Sum_probs=79.3
Q ss_pred CCccEEEccCCCCCCCCC-CC----C-CCCCccEEeeccccCCcccCccc-cCCCCCCEEeccCCcCccccCCCC-----
Q 043008 38 FKLKFINLSHSQCHIKIP-DP----S-ETPNLERIDILNCTNPACVLSSI-TNFNHLSMLCFRHCKNLRHFPNNL----- 105 (517)
Q Consensus 38 ~~L~~L~Ls~~~~l~~~p-~l----~-~l~~L~~L~L~~~~~l~~~p~si-~~l~~L~~L~L~~~~~l~~lp~~~----- 105 (517)
+.|+.|+|++|.+..... .+ . ..++|++|+|++|.........+ ..+++|+.|+|++|.....-...+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 456666666665322111 11 1 22566677776664432211122 234466777777765432211111
Q ss_pred -CCCCCcEEEEecCCCCCccCCCCCCCcEEEeecccCcccCCcCCCCCCccEEEcccCcCCc----cccccccCCCCCcE
Q 043008 106 -HFVCPIIIDFSYCVNLTEFPQISGNIIDLILTETAIEEVPSSTECLTNLQYLFLCSCKKLK----RVSTSICKFKSLVW 180 (517)
Q Consensus 106 -~l~sL~~L~L~~c~~l~~~p~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~----~lp~~l~~l~~L~~ 180 (517)
..++|++|+|++|.. .. .....++..+..+++|++|++++|.+.. .++..+...++|+.
T Consensus 152 ~~~~~L~~L~Ls~n~l-~~---------------~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~ 215 (372)
T 3un9_A 152 HDQCQITTLRLSNNPL-TA---------------AGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQE 215 (372)
T ss_dssp STTCCCCEEECCSSCC-HH---------------HHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCE
T ss_pred hcCCccceeeCCCCCC-Ch---------------HHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCe
Confidence 235566666666532 11 0111223333444555555555554332 12334445556666
Q ss_pred EEcCCCC------CcCCccCCCCCCCCEEEecCCCCCc
Q 043008 181 LSLNNDL------TAIPQEIGCLSSLECLNLGGNNFEG 212 (517)
Q Consensus 181 L~Ls~~l------~~lp~~l~~l~~L~~L~Ls~n~l~~ 212 (517)
|+|++|- ..+...+...++|++|+|++|.|+.
T Consensus 216 L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 216 LNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp EECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred EECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence 6665542 1233445566889999999999885
No 147
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.40 E-value=1.2e-07 Score=95.81 Aligned_cols=153 Identities=12% Similarity=0.095 Sum_probs=83.3
Q ss_pred cccCCCCCCccEEEccCCCCC---------CCCCC-CCCCCCccEEeeccccCCcccCccccCCCCCCEEeccCCcCccc
Q 043008 31 WEGKKRAFKLKFINLSHSQCH---------IKIPD-PSETPNLERIDILNCTNPACVLSSITNFNHLSMLCFRHCKNLRH 100 (517)
Q Consensus 31 ~~~~~~l~~L~~L~Ls~~~~l---------~~~p~-l~~l~~L~~L~L~~~~~l~~~p~si~~l~~L~~L~L~~~~~l~~ 100 (517)
......+++|+.|.+.+.... ..++. +..+|+|+.|+|++|... .++. +. +++|+.|+|..|.....
T Consensus 132 ~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~ 208 (362)
T 2ra8_A 132 VENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDS 208 (362)
T ss_dssp HTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHH
T ss_pred HHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChH
Confidence 344455667777776543210 01111 245677777777766322 2333 32 66777777776653322
Q ss_pred cCCCC---CCCCCcEEEEecCCC-------CCc----cC-CCCCCCcEEEeecccCcc-cCCc---CCCCCCccEEEccc
Q 043008 101 FPNNL---HFVCPIIIDFSYCVN-------LTE----FP-QISGNIIDLILTETAIEE-VPSS---TECLTNLQYLFLCS 161 (517)
Q Consensus 101 lp~~~---~l~sL~~L~L~~c~~-------l~~----~p-~~~~~L~~L~L~~~~i~~-lp~~---i~~l~~L~~L~l~~ 161 (517)
....+ .+++|+.|+|+.+.. +.. +. ..+.+|+.|.|.+|.+.. .+.. ...+++|+.|+++.
T Consensus 209 ~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~ 288 (362)
T 2ra8_A 209 VVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISA 288 (362)
T ss_dssp HHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCS
T ss_pred HHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCC
Confidence 11111 466777777753211 111 11 124567788887777652 1111 13467888888888
Q ss_pred CcCCcc----ccccccCCCCCcEEEcCCC
Q 043008 162 CKKLKR----VSTSICKFKSLVWLSLNND 186 (517)
Q Consensus 162 ~~~l~~----lp~~l~~l~~L~~L~Ls~~ 186 (517)
|.+... ++..+..+++|+.|+++.|
T Consensus 289 n~L~d~G~~~L~~~L~~l~~L~~L~L~~n 317 (362)
T 2ra8_A 289 GVLTDEGARLLLDHVDKIKHLKFINMKYN 317 (362)
T ss_dssp SCCBHHHHHHHHTTHHHHTTCSEEECCSB
T ss_pred CCCChHHHHHHHhhcccCCcceEEECCCC
Confidence 765543 3444556788888888765
No 148
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.40 E-value=7.7e-06 Score=83.55 Aligned_cols=220 Identities=13% Similarity=0.156 Sum_probs=122.9
Q ss_pred CCCCCCCCC-C-CCC-CccEEeccCCCCCccc-cccCCCCCCccEEEccCCC--CCCCCC--CCCCCCCccEEeeccccC
Q 043008 2 YPLRTLPSN-F-KPK-NLVELNLPYGHKVVQI-WEGKKRAFKLKFINLSHSQ--CHIKIP--DPSETPNLERIDILNCTN 73 (517)
Q Consensus 2 ~pl~~lP~~-f-~~~-~L~~L~L~~n~~l~~l-~~~~~~l~~L~~L~Ls~~~--~l~~~p--~l~~l~~L~~L~L~~~~~ 73 (517)
||.++++.. | +.+ .|+.+.++.+ ++.+ ..+|.++.+|+.+.+..+. .++.+. .|.++.+|+.+.+..+ .
T Consensus 49 ~~Vt~Ig~~aF~~~~~~L~sI~iP~s--vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~ 125 (394)
T 4gt6_A 49 YPVSKIGDRVFCNYKYVLTSVQIPDT--VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-V 125 (394)
T ss_dssp EEEEEECTTTTTTCCSCCCEEEECTT--CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-C
T ss_pred eeeeEcCHhhccCCCCcCEEEEECCC--eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-c
Confidence 445566654 6 454 5999999865 7777 4678899999999998762 355555 3788888888887653 2
Q ss_pred CcccCccccCCCCCCEEeccCCcCccccCCCC--CCCCCcEEEEecCCCCCccCCC---CCCCcEEEeecccCcccCCcC
Q 043008 74 PACVLSSITNFNHLSMLCFRHCKNLRHFPNNL--HFVCPIIIDFSYCVNLTEFPQI---SGNIIDLILTETAIEEVPSST 148 (517)
Q Consensus 74 l~~~p~si~~l~~L~~L~L~~~~~l~~lp~~~--~l~sL~~L~L~~c~~l~~~p~~---~~~L~~L~L~~~~i~~lp~~i 148 (517)
...-...+..+.+|+.+.+... ...++... .+.+|+.+.+.++ +..+... -.+|+.+.+..+-...-...+
T Consensus 126 ~~I~~~aF~~c~~L~~i~lp~~--~~~I~~~~F~~c~~L~~i~~~~~--~~~I~~~aF~~~~l~~i~ip~~~~~i~~~af 201 (394)
T 4gt6_A 126 TEIDSEAFHHCEELDTVTIPEG--VTSVADGMFSYCYSLHTVTLPDS--VTAIEERAFTGTALTQIHIPAKVTRIGTNAF 201 (394)
T ss_dssp SEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCCCSEEEECTTCCEECTTTT
T ss_pred ceehhhhhhhhcccccccccce--eeeecccceecccccccccccce--eeEeccccccccceeEEEECCcccccccchh
Confidence 2223345677888888888642 33333333 6777777776542 3333321 123455554433222222233
Q ss_pred CCCCCccEEEcccCcC------------------------------------CccccccccCCCCCcEEEcCCCCCcCCc
Q 043008 149 ECLTNLQYLFLCSCKK------------------------------------LKRVSTSICKFKSLVWLSLNNDLTAIPQ 192 (517)
Q Consensus 149 ~~l~~L~~L~l~~~~~------------------------------------l~~lp~~l~~l~~L~~L~Ls~~l~~lp~ 192 (517)
..+.++.......... ...-...|.++..|+.+.+.++...+..
T Consensus 202 ~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~v~~i~~~aF~~c~~L~~i~lp~~~~~I~~ 281 (394)
T 4gt6_A 202 SECFALSTITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNGVARIETHAFDSCAYLASVKMPDSVVSIGT 281 (394)
T ss_dssp TTCTTCCEEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTTEEEECTTTTTTCSSCCEEECCTTCCEECT
T ss_pred hhccccceecccccccccccceeecccccccccccccccccccceEEcCCcceEcccceeeecccccEEecccccceecC
Confidence 3444444433322110 0001123455566666666555544433
Q ss_pred -cCCCCCCCCEEEecCCCCCcch-hhhhcCCCCCEEecc
Q 043008 193 -EIGCLSSLECLNLGGNNFEGLP-ASIKQISRLECLDLS 229 (517)
Q Consensus 193 -~l~~l~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L~L~ 229 (517)
.+.++++|+.+.+. +.++.++ ..+.++.+|+.+.|.
T Consensus 282 ~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp 319 (394)
T 4gt6_A 282 GAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIP 319 (394)
T ss_dssp TTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECC
T ss_pred cccccccccccccCC-CcccccCceeecCCCCcCEEEeC
Confidence 35566666666664 3455554 345566666666665
No 149
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.33 E-value=3.8e-07 Score=92.25 Aligned_cols=34 Identities=21% Similarity=0.508 Sum_probs=17.1
Q ss_pred CCCCCEEEecCCCCCc-----chhhhhcCCCCCEEeccC
Q 043008 197 LSSLECLNLGGNNFEG-----LPASIKQISRLECLDLSY 230 (517)
Q Consensus 197 l~~L~~L~Ls~n~l~~-----lp~~l~~l~~L~~L~L~~ 230 (517)
+++|++|+|+.|.+.. ++..+..+++|+.|+|++
T Consensus 278 ~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~ 316 (362)
T 2ra8_A 278 LPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKY 316 (362)
T ss_dssp GGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCS
T ss_pred CCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCC
Confidence 4455555555555543 333334455555555554
No 150
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.21 E-value=8.1e-05 Score=75.87 Aligned_cols=225 Identities=12% Similarity=0.126 Sum_probs=134.0
Q ss_pred CCCCCC-C-CCCCccEEeccCC--CCCccc-cccCCCCCCccEEEccCCCCCCCCC--CCCCCCCccEEeeccccCCccc
Q 043008 5 RTLPSN-F-KPKNLVELNLPYG--HKVVQI-WEGKKRAFKLKFINLSHSQCHIKIP--DPSETPNLERIDILNCTNPACV 77 (517)
Q Consensus 5 ~~lP~~-f-~~~~L~~L~L~~n--~~l~~l-~~~~~~l~~L~~L~Ls~~~~l~~~p--~l~~l~~L~~L~L~~~~~l~~~ 77 (517)
+++... | ++.+|+.+.+..+ ..++.+ ...|..+.+|+.+.+..+ ++.++ .|..+.+|+.+.+... ....-
T Consensus 76 t~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~--~~~I~~~aF~~c~~L~~i~lp~~-~~~I~ 152 (394)
T 4gt6_A 76 TEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS--VTEIDSEAFHHCEELDTVTIPEG-VTSVA 152 (394)
T ss_dssp CEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT--CSEECTTTTTTCTTCCEEECCTT-CCEEC
T ss_pred eEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc--cceehhhhhhhhcccccccccce-eeeec
Confidence 344433 6 7899999998765 136666 356777888888777655 44455 3778888888888653 22233
Q ss_pred CccccCCCCCCEEeccCCcCccccCCCC-CCCCCcEEEEecC------------CCCCcc----------CCCC------
Q 043008 78 LSSITNFNHLSMLCFRHCKNLRHFPNNL-HFVCPIIIDFSYC------------VNLTEF----------PQIS------ 128 (517)
Q Consensus 78 p~si~~l~~L~~L~L~~~~~l~~lp~~~-~l~sL~~L~L~~c------------~~l~~~----------p~~~------ 128 (517)
...+..+.+|+.+.+..+ +..+.... ....|+.+.+... ..+..+ ...+
T Consensus 153 ~~~F~~c~~L~~i~~~~~--~~~I~~~aF~~~~l~~i~ip~~~~~i~~~af~~c~~l~~~~~~~~~~~~~~~~~~~~~~~ 230 (394)
T 4gt6_A 153 DGMFSYCYSLHTVTLPDS--VTAIEERAFTGTALTQIHIPAKVTRIGTNAFSECFALSTITSDSESYPAIDNVLYEKSAN 230 (394)
T ss_dssp TTTTTTCTTCCEEECCTT--CCEECTTTTTTCCCSEEEECTTCCEECTTTTTTCTTCCEEEECCSSSCBSSSCEEEECTT
T ss_pred ccceecccccccccccce--eeEeccccccccceeEEEECCcccccccchhhhccccceecccccccccccceeeccccc
Confidence 445667777777777653 33333322 3445665555431 111110 0000
Q ss_pred -----------CCCcEEEeecccCccc-CCcCCCCCCccEEEcccCcCCccccccccCCCCCcEEEcCCCCCcCCc-cCC
Q 043008 129 -----------GNIIDLILTETAIEEV-PSSTECLTNLQYLFLCSCKKLKRVSTSICKFKSLVWLSLNNDLTAIPQ-EIG 195 (517)
Q Consensus 129 -----------~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~Ls~~l~~lp~-~l~ 195 (517)
..+..+.+. +.++.+ ...|..+..|+.+.+... ........+.++++|+.+.+...+..++. .|.
T Consensus 231 ~~~~~~~~~~~~~~~~~~ip-~~v~~i~~~aF~~c~~L~~i~lp~~-~~~I~~~aF~~c~~L~~i~l~~~i~~I~~~aF~ 308 (394)
T 4gt6_A 231 GDYALIRYPSQREDPAFKIP-NGVARIETHAFDSCAYLASVKMPDS-VVSIGTGAFMNCPALQDIEFSSRITELPESVFA 308 (394)
T ss_dssp SCEEEEECCTTCCCSEEECC-TTEEEECTTTTTTCSSCCEEECCTT-CCEECTTTTTTCTTCCEEECCTTCCEECTTTTT
T ss_pred ccccccccccccccceEEcC-CcceEcccceeeecccccEEecccc-cceecCcccccccccccccCCCcccccCceeec
Confidence 000011110 111111 123567788888888654 23333456778889999999888877776 477
Q ss_pred CCCCCCEEEecCCCCCcch-hhhhcCCCCCEEeccCCCCCCcCCC
Q 043008 196 CLSSLECLNLGGNNFEGLP-ASIKQISRLECLDLSYCNSLQSLPE 239 (517)
Q Consensus 196 ~l~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L~L~~c~~l~~lp~ 239 (517)
++.+|+.++|..+ ++.+. ..+.++.+|+.+.|.. .++.+++
T Consensus 309 ~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~--sv~~I~~ 350 (394)
T 4gt6_A 309 GCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPS--SVTKIPE 350 (394)
T ss_dssp TCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECT--TCCBCCG
T ss_pred CCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECc--ccCEEhH
Confidence 8889999998754 66664 4678888899888863 3555553
No 151
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.20 E-value=3e-05 Score=79.08 Aligned_cols=194 Identities=14% Similarity=0.063 Sum_probs=113.8
Q ss_pred ccCCCCCCccEEEccCCCCCCCCC--CCCCCCCccEEeeccccCCcccCccccCCCCCCEEeccCCcCccccCCCC-CCC
Q 043008 32 EGKKRAFKLKFINLSHSQCHIKIP--DPSETPNLERIDILNCTNPACVLSSITNFNHLSMLCFRHCKNLRHFPNNL-HFV 108 (517)
Q Consensus 32 ~~~~~l~~L~~L~Ls~~~~l~~~p--~l~~l~~L~~L~L~~~~~l~~~p~si~~l~~L~~L~L~~~~~l~~lp~~~-~l~ 108 (517)
..+.++.+|+.+.+.++. ..++ .|.++++|+.+.+..+ ....-...+.++..|+.+.+..+. ..+.... ...
T Consensus 156 ~aF~~c~~L~~i~l~~~~--~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~--~~i~~~~~~~~ 230 (394)
T 4fs7_A 156 EAFATCESLEYVSLPDSM--ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSL--YYLGDFALSKT 230 (394)
T ss_dssp TTTTTCTTCCEEECCTTC--CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTC--CEECTTTTTTC
T ss_pred hhhcccCCCcEEecCCcc--ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCc--eEeehhhcccC
Confidence 567788889998887653 3444 3788888888888764 222334466777778877766532 2222222 556
Q ss_pred CCcEEEEecCCCCCccCC----CCCCCcEEEeecccCcccCCcCCCCCCccEEEcccCcCCccccccccCCCCCcEEEcC
Q 043008 109 CPIIIDFSYCVNLTEFPQ----ISGNIIDLILTETAIEEVPSSTECLTNLQYLFLCSCKKLKRVSTSICKFKSLVWLSLN 184 (517)
Q Consensus 109 sL~~L~L~~c~~l~~~p~----~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~Ls 184 (517)
+|+.+.+... +..+.. ...+++.+.+..+...--...+..+..++.+...... .....+..+.+|+.+.+.
T Consensus 231 ~l~~i~ip~~--~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~---i~~~~F~~~~~L~~i~l~ 305 (394)
T 4fs7_A 231 GVKNIIIPDS--FTELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVI---VPEKTFYGCSSLTEVKLL 305 (394)
T ss_dssp CCCEEEECTT--CCEECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSE---ECTTTTTTCTTCCEEEEC
T ss_pred CCceEEECCC--ceecccccccccccceeEEcCCCcceeeccccccccccceeccCcee---eccccccccccccccccc
Confidence 7777776542 223322 2234566666655443334445566666666655432 112345666777777776
Q ss_pred CCCCcCCc-cCCCCCCCCEEEecCCCCCcch-hhhhcCCCCCEEeccCCCCCCcCC
Q 043008 185 NDLTAIPQ-EIGCLSSLECLNLGGNNFEGLP-ASIKQISRLECLDLSYCNSLQSLP 238 (517)
Q Consensus 185 ~~l~~lp~-~l~~l~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L~L~~c~~l~~lp 238 (517)
+++..+.+ ++.++++|+.++|.. .++.+. ..+.++.+|+.+.+.. .++.++
T Consensus 306 ~~i~~I~~~aF~~c~~L~~i~lp~-~v~~I~~~aF~~c~~L~~i~lp~--~l~~I~ 358 (394)
T 4fs7_A 306 DSVKFIGEEAFESCTSLVSIDLPY-LVEEIGKRSFRGCTSLSNINFPL--SLRKIG 358 (394)
T ss_dssp TTCCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCTTCCEECCCT--TCCEEC
T ss_pred cccceechhhhcCCCCCCEEEeCC-cccEEhHHhccCCCCCCEEEECc--cccEeh
Confidence 66666644 366677777777753 355553 4566677777776653 244444
No 152
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.16 E-value=2.9e-05 Score=79.27 Aligned_cols=206 Identities=14% Similarity=0.055 Sum_probs=145.6
Q ss_pred C-CCCCccEEeccCCCCCcccc-ccCCCCCCccEEEccCCCCCCCCC--CCCCCCCccEEeeccccCCcccCccccCCCC
Q 043008 11 F-KPKNLVELNLPYGHKVVQIW-EGKKRAFKLKFINLSHSQCHIKIP--DPSETPNLERIDILNCTNPACVLSSITNFNH 86 (517)
Q Consensus 11 f-~~~~L~~L~L~~n~~l~~l~-~~~~~l~~L~~L~Ls~~~~l~~~p--~l~~l~~L~~L~L~~~~~l~~~p~si~~l~~ 86 (517)
| ++++|+.+.++.+ +..+. ..+..+.+|+.+++..+ ++.++ .|.++..|+.+.+..+ ...+........+
T Consensus 158 F~~c~~L~~i~l~~~--~~~I~~~~F~~c~~L~~i~l~~~--~~~I~~~~F~~~~~L~~i~~~~~--~~~i~~~~~~~~~ 231 (394)
T 4fs7_A 158 FATCESLEYVSLPDS--METLHNGLFSGCGKLKSIKLPRN--LKIIRDYCFAECILLENMEFPNS--LYYLGDFALSKTG 231 (394)
T ss_dssp TTTCTTCCEEECCTT--CCEECTTTTTTCTTCCBCCCCTT--CCEECTTTTTTCTTCCBCCCCTT--CCEECTTTTTTCC
T ss_pred hcccCCCcEEecCCc--cceeccccccCCCCceEEEcCCC--ceEeCchhhccccccceeecCCC--ceEeehhhcccCC
Confidence 6 7899999999865 55664 56788999999999876 45555 4888999999988764 3334444555678
Q ss_pred CCEEeccCCcCccccCCC-C-CCCCCcEEEEecCCCCCccCC-C---CCCCcEEEeecccCcccCCcCCCCCCccEEEcc
Q 043008 87 LSMLCFRHCKNLRHFPNN-L-HFVCPIIIDFSYCVNLTEFPQ-I---SGNIIDLILTETAIEEVPSSTECLTNLQYLFLC 160 (517)
Q Consensus 87 L~~L~L~~~~~l~~lp~~-~-~l~sL~~L~L~~c~~l~~~p~-~---~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~ 160 (517)
|+.+.+... ...+... + ++..|+.+.+..+ ...+.. . ...++.+....+.+. ...+..+.+|+.+.+.
T Consensus 232 l~~i~ip~~--~~~i~~~~f~~~~~l~~~~~~~~--~~~i~~~~F~~~~~l~~~~~~~~~i~--~~~F~~~~~L~~i~l~ 305 (394)
T 4fs7_A 232 VKNIIIPDS--FTELGKSVFYGCTDLESISIQNN--KLRIGGSLFYNCSGLKKVIYGSVIVP--EKTFYGCSSLTEVKLL 305 (394)
T ss_dssp CCEEEECTT--CCEECSSTTTTCSSCCEEEECCT--TCEECSCTTTTCTTCCEEEECSSEEC--TTTTTTCTTCCEEEEC
T ss_pred CceEEECCC--ceecccccccccccceeEEcCCC--cceeeccccccccccceeccCceeec--cccccccccccccccc
Confidence 888888653 3334333 3 7888998888763 223332 2 233455555444322 2246678899999987
Q ss_pred cCcCCccccccccCCCCCcEEEcCCCCCcCCc-cCCCCCCCCEEEecCCCCCcch-hhhhcCCCCCEEeccC
Q 043008 161 SCKKLKRVSTSICKFKSLVWLSLNNDLTAIPQ-EIGCLSSLECLNLGGNNFEGLP-ASIKQISRLECLDLSY 230 (517)
Q Consensus 161 ~~~~l~~lp~~l~~l~~L~~L~Ls~~l~~lp~-~l~~l~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L~L~~ 230 (517)
.+ ....-..+|.++.+|+.+++.+++..+.. +|.++++|+.+++..+ ++.++ ..+.++.+|+.+++..
T Consensus 306 ~~-i~~I~~~aF~~c~~L~~i~lp~~v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 306 DS-VKFIGEEAFESCTSLVSIDLPYLVEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPK 375 (394)
T ss_dssp TT-CCEECTTTTTTCTTCCEECCCTTCCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEG
T ss_pred cc-cceechhhhcCCCCCCEEEeCCcccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECC
Confidence 64 33334456889999999999888888754 5889999999999776 77765 4788899999999874
No 153
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.16 E-value=0.00027 Score=71.39 Aligned_cols=103 Identities=16% Similarity=0.159 Sum_probs=65.0
Q ss_pred CCCCCCccEEEcccCcCCccccccccCCCCCcEEEcCCCCCcCCc-cCCCCCCCCEEEecCCCCCcch-hhhhcCCCCCE
Q 043008 148 TECLTNLQYLFLCSCKKLKRVSTSICKFKSLVWLSLNNDLTAIPQ-EIGCLSSLECLNLGGNNFEGLP-ASIKQISRLEC 225 (517)
Q Consensus 148 i~~l~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~Ls~~l~~lp~-~l~~l~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~ 225 (517)
+..+..|+.+.+..+ ....-...+.++.+|+.+.+..++..++. .+..+++|+.+.+.++.++.++ ..+.++.+|+.
T Consensus 236 f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~ 314 (379)
T 4h09_A 236 FYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAKVKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSS 314 (379)
T ss_dssp TTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCCCSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCE
T ss_pred ccCCccceEEEcCCC-ccEeCccccceeehhccccccccceeccccccccccccccccccccccceehhhhhcCCCCCCE
Confidence 344556666666543 22222345667777888887777766665 4677888888888888888775 46778888888
Q ss_pred EeccCCCCCCcCCCCCCCccEEecccccCcCcCCC
Q 043008 226 LDLSYCNSLQSLPELPLHLEVLLATNCKRLQSLPE 260 (517)
Q Consensus 226 L~L~~c~~l~~lp~l~~~L~~L~~~~c~~l~~l~~ 260 (517)
+.|.. .++.++.. -..+|.+|+.+..
T Consensus 315 i~lp~--~l~~I~~~-------aF~~C~~L~~i~i 340 (379)
T 4h09_A 315 VTLPT--ALKTIQVY-------AFKNCKALSTISY 340 (379)
T ss_dssp EECCT--TCCEECTT-------TTTTCTTCCCCCC
T ss_pred EEcCc--cccEEHHH-------HhhCCCCCCEEEE
Confidence 88753 34444431 1235666665543
No 154
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.98 E-value=2.5e-06 Score=76.59 Aligned_cols=86 Identities=16% Similarity=0.198 Sum_probs=47.5
Q ss_pred CCccEEEccCCCCCCC-CCCCCCCCCccEEeeccccCCcc-cCccccCC----CCCCEEeccCCcCccccC-CCC-CCCC
Q 043008 38 FKLKFINLSHSQCHIK-IPDPSETPNLERIDILNCTNPAC-VLSSITNF----NHLSMLCFRHCKNLRHFP-NNL-HFVC 109 (517)
Q Consensus 38 ~~L~~L~Ls~~~~l~~-~p~l~~l~~L~~L~L~~~~~l~~-~p~si~~l----~~L~~L~L~~~~~l~~lp-~~~-~l~s 109 (517)
.+|+.|||++|.+... +..+.++++|++|+|++|..+.. --..+..+ ++|++|+|++|..++.-- ..+ .+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 4566677776652211 22356677777777777754332 11223333 357777777776544311 112 5677
Q ss_pred CcEEEEecCCCCCc
Q 043008 110 PIIIDFSYCVNLTE 123 (517)
Q Consensus 110 L~~L~L~~c~~l~~ 123 (517)
|+.|++++|..++.
T Consensus 141 L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 141 LKYLFLSDLPGVKE 154 (176)
T ss_dssp CCEEEEESCTTCCC
T ss_pred CCEEECCCCCCCCc
Confidence 77777777776553
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.69 E-value=1.7e-05 Score=72.03 Aligned_cols=87 Identities=9% Similarity=0.137 Sum_probs=46.5
Q ss_pred CCcCCCCCCccEEEcccCcCCcc----ccccccCCCCCcEEEcCCCC------CcCCccCCCCCCCCEEEe--cCCCCCc
Q 043008 145 PSSTECLTNLQYLFLCSCKKLKR----VSTSICKFKSLVWLSLNNDL------TAIPQEIGCLSSLECLNL--GGNNFEG 212 (517)
Q Consensus 145 p~~i~~l~~L~~L~l~~~~~l~~----lp~~l~~l~~L~~L~Ls~~l------~~lp~~l~~l~~L~~L~L--s~n~l~~ 212 (517)
...+...++|++|++++|.+... +...+...++|++|+|++|- ..+...+...++|++|+| ++|.|..
T Consensus 58 ~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~ 137 (185)
T 1io0_A 58 AEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGN 137 (185)
T ss_dssp HHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCH
T ss_pred HHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCH
Confidence 33445556666666666654322 22333444556666665432 123344555566666666 5666653
Q ss_pred -----chhhhhcCCCCCEEeccCC
Q 043008 213 -----LPASIKQISRLECLDLSYC 231 (517)
Q Consensus 213 -----lp~~l~~l~~L~~L~L~~c 231 (517)
+...+...+.|+.|+|++|
T Consensus 138 ~g~~~l~~~L~~n~~L~~L~L~~n 161 (185)
T 1io0_A 138 NVEMEIANMLEKNTTLLKFGYHFT 161 (185)
T ss_dssp HHHHHHHHHHHHCSSCCEEECCCS
T ss_pred HHHHHHHHHHHhCCCcCEEeccCC
Confidence 4445555666666666653
No 156
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.62 E-value=1.9e-05 Score=75.98 Aligned_cols=98 Identities=14% Similarity=0.179 Sum_probs=64.2
Q ss_pred CCccE--EeccCCCCCccccccC----CCCCCccEEEccCCCCCC--CCCC-CCCCCCccEEeeccccCCcccCccccCC
Q 043008 14 KNLVE--LNLPYGHKVVQIWEGK----KRAFKLKFINLSHSQCHI--KIPD-PSETPNLERIDILNCTNPACVLSSITNF 84 (517)
Q Consensus 14 ~~L~~--L~L~~n~~l~~l~~~~----~~l~~L~~L~Ls~~~~l~--~~p~-l~~l~~L~~L~L~~~~~l~~~p~si~~l 84 (517)
+.|+. ++++.| ....++..+ .++++|+.|+|++|.+.. .+|+ +..+++|+.|+|++|..... ..+..+
T Consensus 141 p~L~~~~l~l~~N-~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l 217 (267)
T 3rw6_A 141 PDLVAQNIDVVLN-RRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKI 217 (267)
T ss_dssp HHHHHTTCCCCTT-SHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGG
T ss_pred cchhhcCccccCC-HHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhc
Confidence 34444 566666 555443222 467889999999998543 2333 35788999999998865432 234444
Q ss_pred C--CCCEEeccCCcCccccCCC-------C-CCCCCcEEE
Q 043008 85 N--HLSMLCFRHCKNLRHFPNN-------L-HFVCPIIID 114 (517)
Q Consensus 85 ~--~L~~L~L~~~~~l~~lp~~-------~-~l~sL~~L~ 114 (517)
. +|++|+|++|.....+|.. + .+++|+.||
T Consensus 218 ~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 218 KGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp TTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred ccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence 4 8999999998877666531 2 678888775
No 157
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.61 E-value=5.7e-05 Score=67.68 Aligned_cols=84 Identities=11% Similarity=0.021 Sum_probs=40.9
Q ss_pred CCccEEEcccCcCCccccccccCCCCCcEEEcCCCCCcC---CccCCCC----CCCCEEEecCC-CCCc--chhhhhcCC
Q 043008 152 TNLQYLFLCSCKKLKRVSTSICKFKSLVWLSLNNDLTAI---PQEIGCL----SSLECLNLGGN-NFEG--LPASIKQIS 221 (517)
Q Consensus 152 ~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~Ls~~l~~l---p~~l~~l----~~L~~L~Ls~n-~l~~--lp~~l~~l~ 221 (517)
.+|+.||+++|.+...--..+..+++|+.|+|+++..-- -..+..+ ++|++|+|++| +|+. +. .+..++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~-~L~~~~ 139 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGII-ALHHFR 139 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHH-HGGGCT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHH-HHhcCC
Confidence 456666666665433322333444444444444321000 0012221 35667777766 3553 32 445667
Q ss_pred CCCEEeccCCCCCCc
Q 043008 222 RLECLDLSYCNSLQS 236 (517)
Q Consensus 222 ~L~~L~L~~c~~l~~ 236 (517)
+|+.|+|++|+.++.
T Consensus 140 ~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 140 NLKYLFLSDLPGVKE 154 (176)
T ss_dssp TCCEEEEESCTTCCC
T ss_pred CCCEEECCCCCCCCc
Confidence 777777777666654
No 158
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.50 E-value=0.0049 Score=61.98 Aligned_cols=119 Identities=10% Similarity=0.046 Sum_probs=77.3
Q ss_pred CCCCCcEEEEecCCCCCccCCC----CCCCcEEEeecccCcccCC-cCCCCCCccEEEcccCcCCccccccccCCCCCcE
Q 043008 106 HFVCPIIIDFSYCVNLTEFPQI----SGNIIDLILTETAIEEVPS-STECLTNLQYLFLCSCKKLKRVSTSICKFKSLVW 180 (517)
Q Consensus 106 ~l~sL~~L~L~~c~~l~~~p~~----~~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~l~~~~~l~~lp~~l~~l~~L~~ 180 (517)
...+|+.+.+.. .+..+... ..+|+.+.+..+ ++.+.. .+.++.+|+.+.+..+ ........|.++.+|+.
T Consensus 215 ~~~~l~~i~~~~--~~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~ 290 (379)
T 4h09_A 215 YGKNLKKITITS--GVTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTK 290 (379)
T ss_dssp TCSSCSEEECCT--TCCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCE
T ss_pred cccccceeeecc--ceeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccccccccccc
Confidence 556677776654 23333322 234677777654 554433 4567788888888653 33333356788889999
Q ss_pred EEcCCC-CCcCCc-cCCCCCCCCEEEecCCCCCcch-hhhhcCCCCCEEecc
Q 043008 181 LSLNND-LTAIPQ-EIGCLSSLECLNLGGNNFEGLP-ASIKQISRLECLDLS 229 (517)
Q Consensus 181 L~Ls~~-l~~lp~-~l~~l~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L~L~ 229 (517)
+.+.++ +..+++ .|.++.+|+.++|..+ ++.+. ..+.++.+|+.+.+.
T Consensus 291 i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 291 VVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp EEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCC
T ss_pred ccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEEC
Confidence 998754 666754 5788899999998643 66665 357777777777665
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.26 E-value=0.00028 Score=67.75 Aligned_cols=36 Identities=22% Similarity=0.240 Sum_probs=17.9
Q ss_pred CCCCccEEEcccCcCCc--cccccccCCCCCcEEEcCC
Q 043008 150 CLTNLQYLFLCSCKKLK--RVSTSICKFKSLVWLSLNN 185 (517)
Q Consensus 150 ~l~~L~~L~l~~~~~l~--~lp~~l~~l~~L~~L~Ls~ 185 (517)
++++|+.|+|++|.+.+ .+|..+..+++|+.|+|++
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~ 205 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSG 205 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTT
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCC
Confidence 35556666666665444 3333344444444444443
No 160
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.23 E-value=3.5e-05 Score=69.94 Aligned_cols=17 Identities=6% Similarity=-0.224 Sum_probs=10.4
Q ss_pred CCCCCCCEEEecCCCCC
Q 043008 195 GCLSSLECLNLGGNNFE 211 (517)
Q Consensus 195 ~~l~~L~~L~Ls~n~l~ 211 (517)
...++|++|+|++|.+.
T Consensus 148 ~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 148 EKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHCSSCCEEECCCSSHH
T ss_pred HhCCCcCEEeccCCCCC
Confidence 34456677777776654
No 161
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.16 E-value=0.024 Score=47.87 Aligned_cols=52 Identities=8% Similarity=0.007 Sum_probs=34.3
Q ss_pred EEeccCCCCCc--cccccCCCCCCccEEEccCCCCCCCCC-C-CCCCCCccEEeeccccC
Q 043008 18 ELNLPYGHKVV--QIWEGKKRAFKLKFINLSHSQCHIKIP-D-PSETPNLERIDILNCTN 73 (517)
Q Consensus 18 ~L~L~~n~~l~--~l~~~~~~l~~L~~L~Ls~~~~l~~~p-~-l~~l~~L~~L~L~~~~~ 73 (517)
.++.+++ .++ .+|.++. ++|+.|+|++|. ++.+| + |..+++|++|+|.+|..
T Consensus 12 ~v~Cs~~-~L~~~~vP~~lp--~~l~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRR-GLTWASLPTAFP--VDTTELVLTGNN-LTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSS-CCCTTTSCSCCC--TTCSEEECTTSC-CSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCC-CCccccCCCCCC--cCCCEEECCCCc-CCccChhhhhhccccCEEEecCCCe
Confidence 5666666 666 6765432 367788888877 34454 2 67777888888887743
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=94.03 E-value=0.033 Score=50.56 Aligned_cols=60 Identities=22% Similarity=0.175 Sum_probs=32.1
Q ss_pred ccCCCCCcEEEcCCCC------CcCCccCCCCCCCCEEEecCCCCCc-----chhhhhcCCCCCEEeccCC
Q 043008 172 ICKFKSLVWLSLNNDL------TAIPQEIGCLSSLECLNLGGNNFEG-----LPASIKQISRLECLDLSYC 231 (517)
Q Consensus 172 l~~l~~L~~L~Ls~~l------~~lp~~l~~l~~L~~L~Ls~n~l~~-----lp~~l~~l~~L~~L~L~~c 231 (517)
+..-+.|+.|+|++|. ..+-+.+..-+.|+.|+|++|.|.. +-..+..-..|+.|+|++|
T Consensus 66 L~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 66 ACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred HhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCC
Confidence 3444455555554432 2233333344566777777776662 3445555566777777643
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=93.97 E-value=0.076 Score=44.71 Aligned_cols=35 Identities=6% Similarity=-0.043 Sum_probs=17.9
Q ss_pred CccEEeeccccCCcccCccccCCCCCCEEeccCCc
Q 043008 62 NLERIDILNCTNPACVLSSITNFNHLSMLCFRHCK 96 (517)
Q Consensus 62 ~L~~L~L~~~~~l~~~p~si~~l~~L~~L~L~~~~ 96 (517)
+|++|+|++|.+...-+..|..+++|+.|+|.+|.
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 45566666554333223344555556666665553
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=92.80 E-value=0.098 Score=47.42 Aligned_cols=61 Identities=16% Similarity=0.107 Sum_probs=41.4
Q ss_pred CccCCCCCCCCEEEecCCCCCc-----chhhhhcCCCCCEEeccCCCCCCcCC--------CCCCCccEEecccc
Q 043008 191 PQEIGCLSSLECLNLGGNNFEG-----LPASIKQISRLECLDLSYCNSLQSLP--------ELPLHLEVLLATNC 252 (517)
Q Consensus 191 p~~l~~l~~L~~L~Ls~n~l~~-----lp~~l~~l~~L~~L~L~~c~~l~~lp--------~l~~~L~~L~~~~c 252 (517)
-+.+..-+.|+.|+|++|.|.. +...+..-..|+.|+|+. +.+..-. .....|+.|++.++
T Consensus 63 a~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~-N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 63 IEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVES-NFLTPELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCS-SBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred HHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCC-CcCCHHHHHHHHHHHhhCCceeEEECCCC
Confidence 3445566788899999988873 566777788889999987 4443211 12356888887653
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=39.31 E-value=37 Score=26.44 Aligned_cols=37 Identities=11% Similarity=-0.080 Sum_probs=19.5
Q ss_pred ccCCCCCCccEEEccCCCCCCCCC--CCCCCCCccEEeecc
Q 043008 32 EGKKRAFKLKFINLSHSQCHIKIP--DPSETPNLERIDILN 70 (517)
Q Consensus 32 ~~~~~l~~L~~L~Ls~~~~l~~~p--~l~~l~~L~~L~L~~ 70 (517)
..|.++.+|+.+.|-.+ ++.+- .|.++.+|+.+.+.+
T Consensus 14 ~aF~~c~~L~~i~iP~~--v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 14 SLFAGNTVIREITVQPN--IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CTTTTCTTCCCEEECTT--SSCCCTTSSTTCTTCCCEEECC
T ss_pred HHhcCCCCCcEEEcCCc--hheEcHHHHhccCCccEEEEcC
Confidence 34455555555555544 23333 356666666666654
Done!