BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043011
(133 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LYN7|AML4_ARATH Protein MEI2-like 4 OS=Arabidopsis thaliana GN=ML4 PE=1 SV=1
Length = 907
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 56/108 (51%), Gaps = 5/108 (4%)
Query: 23 LFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAADDSGARVIVSYFDEGSAQAAFNSLHSR 82
LFV N ++ +G +F FGDV+ ++ A + ++VSY+D +AQ A +LH R
Sbjct: 213 LFVRNVDSSIEDC--ELGVLFKQFGDVRALHTAGKNRGFIMVSYYDIRAAQKAARALHGR 270
Query: 83 PCPDLANRFLHISYSVLEDSPATRHITSSVPVSLVASELNIPGLHSCF 130
L R L I YS+ +++P ++ V+ + S ++ LH F
Sbjct: 271 L---LRGRKLDIRYSIPKENPKENSSEGALWVNNLDSSISNEELHGIF 315
Score = 32.3 bits (72), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 37/75 (49%), Gaps = 4/75 (5%)
Query: 8 RFRRPKAGEDERSPN--LFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAADDSGARVIVS 65
R+ PK E S L+V N ++ S E + +FS++G+++ + ++V +
Sbjct: 280 RYSIPKENPKENSSEGALWVNNLDSSI--SNEELHGIFSSYGEIREVRRTMHENSQVYIE 337
Query: 66 YFDEGSAQAAFNSLH 80
+FD A+ A L+
Sbjct: 338 FFDVRKAKVALQGLN 352
>sp|Q6EQX3|OML5_ORYSJ Protein MEI2-like 5 OS=Oryza sativa subsp. japonica GN=ML5 PE=2
SV=1
Length = 811
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 49/95 (51%), Gaps = 5/95 (5%)
Query: 20 SPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAADDSGARVIVSYFDEGSAQAAFNSL 79
S LFV N V S + S+F FGD++ +Y A V++SY+D A+ A +L
Sbjct: 192 SRTLFVRNINSNVEDS--ELRSLFEPFGDIRSMYTATKHRGFVMISYYDIRHARNAKTAL 249
Query: 80 HSRPCPDLANRFLHISYSVLEDSPATRHITSSVPV 114
S+P L R L I YS+ +++P+ + + V
Sbjct: 250 QSKP---LRRRKLDIHYSIPKENPSDKDMNQGTLV 281
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Query: 16 EDERSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAADDSGARVIVSYFDEGSAQAA 75
+D L + N PAV S E + +F AFG+V+ I + ++D +A++A
Sbjct: 273 KDMNQGTLVIFNLEPAV--SNEELLQIFGAFGEVREIRETPHKRHHRFIEFYDVRAAESA 330
Query: 76 FNSLHS 81
SL+
Sbjct: 331 LRSLNK 336
>sp|Q6ZI17|OML2_ORYSJ Protein MEI2-like 2 OS=Oryza sativa subsp. japonica GN=ML2 PE=2
SV=1
Length = 848
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 48/92 (52%), Gaps = 5/92 (5%)
Query: 23 LFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAADDSGARVIVSYFDEGSAQAAFNSLHSR 82
LFV N V + + S+F +GD++ +Y A V++SYFD +A+ A L ++
Sbjct: 199 LFVRNINSNVDDT--ELRSLFEQYGDIRTLYTATKHRGFVMISYFDIRAARGAMRGLQNK 256
Query: 83 PCPDLANRFLHISYSVLEDSPATRHITSSVPV 114
P L R L I +S+ +++P+ + + V
Sbjct: 257 P---LRRRKLDIHFSIPKENPSDKDLNQGTLV 285
Score = 36.2 bits (82), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 48/116 (41%), Gaps = 18/116 (15%)
Query: 9 FRRPKAGEDERSPN---LFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAADDSGARVIVS 65
F PK ++ N L + N P+V S E + +F +G+VK I + +
Sbjct: 267 FSIPKENPSDKDLNQGTLVIFNLDPSV--SNEEVRQIFGTYGEVKEIRETPNKKHHKFIE 324
Query: 66 YFDEGSAQAAFNSLH-------------SRPCPDLANRFLHISYSVLEDSPATRHI 108
++D +A+AA SL+ SRP N + + + +D P + I
Sbjct: 325 FYDVRAAEAALRSLNKSEIAGKRIKLEPSRPGGTRRNLMQQLGHDIDQDEPRSYRI 380
>sp|Q8VWF5|AML5_ARATH Protein MEI2-like 5 OS=Arabidopsis thaliana GN=ML5 PE=1 SV=1
Length = 800
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 48/92 (52%), Gaps = 5/92 (5%)
Query: 23 LFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAADDSGARVIVSYFDEGSAQAAFNSLHSR 82
LFV N V S + ++F +GD++ +Y V++SY+D SA+ A SL ++
Sbjct: 170 LFVRNINSNVEDS--ELTALFEQYGDIRTLYTTCKHRGFVMISYYDIRSARMAMRSLQNK 227
Query: 83 PCPDLANRFLHISYSVLEDSPATRHITSSVPV 114
P L R L I +S+ +D+P+ + + V
Sbjct: 228 P---LRRRKLDIHFSIPKDNPSEKDMNQGTLV 256
Score = 29.3 bits (64), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 5/75 (6%)
Query: 9 FRRPKAGEDERSPN---LFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAADDSGARVIVS 65
F PK E+ N L V N P++ S + + +F A G++K I V
Sbjct: 238 FSIPKDNPSEKDMNQGTLVVFNLDPSI--SNDDLHGIFGAHGEIKEIRETPHKRHHKFVE 295
Query: 66 YFDEGSAQAAFNSLH 80
++D A+AA +L+
Sbjct: 296 FYDVRGAEAALKALN 310
>sp|Q64M78|OML4_ORYSJ Protein MEI2-like 4 OS=Oryza sativa subsp. japonica GN=ML4 PE=2
SV=1
Length = 1001
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 53/115 (46%), Gaps = 6/115 (5%)
Query: 17 DERSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAADDSGARVIVSYFDEGSAQAAF 76
++ S LFV N V S + +F FGD++ +Y A V++SY+D SA A
Sbjct: 271 EQPSRTLFVRNINSNVEDS--ELKLLFEHFGDIRALYTACKHRGFVMISYYDIRSALNAK 328
Query: 77 NSLHSRPCPDLANRFLHISYSVLEDSPATRHITSSVPVSL-VASELNIPGLHSCF 130
L ++ L R L I YS+ +D+P+ + I V V L LH F
Sbjct: 329 MELQNKA---LRRRKLDIHYSIPKDNPSEKDINQGTIVLFNVDLSLTNDDLHKIF 380
>sp|Q9SJG8|AML2_ARATH Protein MEI2-like 2 OS=Arabidopsis thaliana GN=ML2 PE=2 SV=2
Length = 843
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 50/95 (52%), Gaps = 5/95 (5%)
Query: 20 SPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAADDSGARVIVSYFDEGSAQAAFNSL 79
S LFV N +V S + ++F FG+++ +Y A S V++SY+D +A AA +L
Sbjct: 197 SRTLFVRNINSSVEDS--ELSALFEPFGEIRSLYTACKSRGFVMISYYDIRAAHAAMRAL 254
Query: 80 HSRPCPDLANRFLHISYSVLEDSPATRHITSSVPV 114
+ L R L I +S+ +++P+ + + V
Sbjct: 255 QNTL---LRKRTLDIHFSIPKENPSEKDMNQGTLV 286
>sp|O60059|YG58_SCHPO Pumilio domain-containing protein C56F2.08c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC56F2.08c PE=1 SV=1
Length = 661
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 40/63 (63%), Gaps = 7/63 (11%)
Query: 23 LFVANCGPAVGVSYEAIGSVFSAFGDVKGIY--AADDSGARVIVSYFDEGSAQAAFNSLH 80
L+V+N VG S AI ++FSA+G+VK I+ + D+S IVSY SA A ++LH
Sbjct: 2 LYVSNL--PVGTSSSAIHALFSAYGNVKDIWMLSPDNSA---IVSYESLSSAIVARDALH 56
Query: 81 SRP 83
+RP
Sbjct: 57 NRP 59
>sp|Q9SVV9|AML3_ARATH Protein MEI2-like 3 OS=Arabidopsis thaliana GN=ML3 PE=2 SV=2
Length = 759
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 5/92 (5%)
Query: 23 LFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAADDSGARVIVSYFDEGSAQAAFNSLHSR 82
LFV N V S + ++F +G ++ +Y A V+VSY D +++AA +L +
Sbjct: 168 LFVRNINSNVEDS--ELQALFEQYGHIRTLYTACKQRGFVMVSYNDIRASRAAMRALQGK 225
Query: 83 PCPDLANRFLHISYSVLEDSPATRHITSSVPV 114
L R L I +S+ +D+P+ + + V
Sbjct: 226 L---LKKRKLDIHFSIPKDNPSEKDVNQGTLV 254
Score = 36.6 bits (83), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 56/137 (40%), Gaps = 20/137 (14%)
Query: 9 FRRPKAGEDERSPN---LFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAADDSGARVIVS 65
F PK E+ N L V N P+V S + ++F +G++K I + V
Sbjct: 236 FSIPKDNPSEKDVNQGTLVVFNLAPSV--SNRDLENIFGVYGEIKEIRETPNKRHHKFVE 293
Query: 66 YFDEGSAQAAFNSL-------------HSRPCPDLANRFLHISYSVLEDSPAT--RHITS 110
+FD SA AA +L HSRP N L ++ + +D + H+ S
Sbjct: 294 FFDVRSADAALKALNRTEIAGKRIKLEHSRPGGARRNMMLQMNPELEQDDSYSYLNHVES 353
Query: 111 SVPVSLVASELNIPGLH 127
+ S + + N P H
Sbjct: 354 PLASSPIGNWRNSPIDH 370
>sp|Q75M35|OML3_ORYSJ Protein MEI2-like 3 OS=Oryza sativa subsp. japonica GN=ML3 PE=2
SV=2
Length = 955
Score = 37.7 bits (86), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 26/42 (61%)
Query: 42 VFSAFGDVKGIYAADDSGARVIVSYFDEGSAQAAFNSLHSRP 83
+F +GD++ +Y + V VSY+D +AQ A +LHS+P
Sbjct: 289 LFQQYGDIRMLYTSFKHHGFVTVSYYDIRAAQNAMRALHSKP 330
>sp|Q09442|SF3B4_CAEEL Splicing factor 3B subunit 4 OS=Caenorhabditis elegans GN=sap-49
PE=1 SV=2
Length = 388
Score = 37.0 bits (84), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 44/93 (47%), Gaps = 5/93 (5%)
Query: 22 NLFVANCGPAVGVSYEAIGSVFSAFG---DVKGIYAADDSGARVIVSYFDEGSAQAAFNS 78
N+FV N P V + + FSAFG V I DSG ++ + S +A+ +
Sbjct: 101 NIFVGNLDPEV--DEKLLYDTFSAFGVILQVPKIMRDVDSGTSKGFAFINFASFEASDTA 158
Query: 79 LHSRPCPDLANRFLHISYSVLEDSPATRHITSS 111
L + L NR + +SY+ DS RH T++
Sbjct: 159 LEAMNGQFLCNRAITVSYAFKRDSKGERHGTAA 191
>sp|Q8W4I9|AML1_ARATH Protein MEI2-like 1 OS=Arabidopsis thaliana GN=ML1 PE=1 SV=1
Length = 915
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 53/106 (50%), Gaps = 11/106 (10%)
Query: 23 LFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAADDSGARVIVSYFDEGSAQAAFNSLHSR 82
L V N V YE + +F FGD++ ++ A + ++VSY D +AQ A +L ++
Sbjct: 219 LLVGNISSNV-EDYE-LKVLFEQFGDIQALHTACKNRGFIMVSYCDIRAAQNAARALQNK 276
Query: 83 PCPDLANRFLHISYSVLEDSPATRH------ITSSVPVSLVASELN 122
L L I YS+ +++P+ + + +++ S+ ELN
Sbjct: 277 L---LRGTKLDIRYSISKENPSQKDTSKGALLVNNLDSSISNQELN 319
>sp|Q9LEB4|RBP45_NICPL Polyadenylate-binding protein RBP45 OS=Nicotiana plumbaginifolia
GN=RBP45 PE=1 SV=1
Length = 409
Score = 33.5 bits (75), Expect = 0.35, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 43/84 (51%), Gaps = 8/84 (9%)
Query: 1 MGAPSNSRFRRPKAGEDERSPN---LFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAADD 57
+G P + ++ P+A + E PN +FV P V+ E + VFS +G++ ++
Sbjct: 259 VGTPQKATYQNPQATQGESDPNNTTIFVGGLDPT--VAEEHLRQVFSPYGEL--VHVKIV 314
Query: 58 SGARV-IVSYFDEGSAQAAFNSLH 80
+G R V + SA+ A +SL+
Sbjct: 315 AGKRCGFVQFGTRASAEQALSSLN 338
>sp|P08965|MEI2_SCHPO Meiosis protein mei2 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=mei2 PE=1 SV=1
Length = 750
Score = 33.1 bits (74), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Query: 23 LFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAADDSGARV-IVSYFDEGSAQAAFNSLHS 81
LFV N P + V Y + +FS GDVKGI + S + IV++FD A A SL S
Sbjct: 197 LFVTNL-PRI-VPYATLLELFSKLGDVKGIDTSSLSTDGICIVAFFDIRQAIQAAKSLRS 254
Query: 82 R 82
+
Sbjct: 255 Q 255
>sp|Q5AJS6|MRD1_CANAL Multiple RNA-binding domain-containing protein 1 OS=Candida
albicans (strain SC5314 / ATCC MYA-2876) GN=MRD1 PE=3
SV=1
Length = 841
Score = 32.7 bits (73), Expect = 0.62, Method: Composition-based stats.
Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 16 EDERSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAADDSGARVIVSYFDEGSAQAA 75
+ ER + + P G + + IG +FSA+G +K + +G I+ + D SA+AA
Sbjct: 487 KKERDDKIILVKNFP-FGTTIDEIGELFSAYGQLKRMLMP-PAGTIAIIEFRDAPSARAA 544
Query: 76 FNSL 79
F+ L
Sbjct: 545 FSKL 548
>sp|Q0JGS5|EAR1_ORYSJ Protein terminal ear1 homolog OS=Oryza sativa subsp. japonica
GN=PLA2 PE=2 SV=1
Length = 683
Score = 32.7 bits (73), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Query: 22 NLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAADDSGARVIVSYFDEGSAQAAFNSLHS 81
+L V N PA+ V +E + +F A+GDVK + + + V +FD A A + L+
Sbjct: 223 SLVVLNSLPAMSV-FE-LREIFQAYGDVKDVRESALRPSNKFVEFFDTRDADRALHELNG 280
Query: 82 RPCPDLANRFLHISYS 97
+ +L R L + Y+
Sbjct: 281 K---ELFGRRLVVEYT 293
>sp|A2WY46|EAR1_ORYSI Protein terminal ear1 homolog OS=Oryza sativa subsp. indica GN=PLA2
PE=2 SV=1
Length = 680
Score = 32.7 bits (73), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Query: 22 NLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAADDSGARVIVSYFDEGSAQAAFNSLHS 81
+L V N PA+ V +E + +F A+GDVK + + + V +FD A A + L+
Sbjct: 223 SLVVLNSLPAMSV-FE-LREIFQAYGDVKDVRESALRPSNKFVEFFDTRDADRALHELNG 280
Query: 82 RPCPDLANRFLHISYS 97
+ +L R L + Y+
Sbjct: 281 K---ELFGRRLVVEYT 293
>sp|O65001|TE1_MAIZE Protein terminal ear1 OS=Zea mays GN=TE1 PE=2 SV=1
Length = 656
Score = 32.3 bits (72), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
Query: 30 PAVGVSYEAIGSVFSAFGDVKGIYAADDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLAN 89
P GVS + VF AFGD+K + + + V +FD A A L+ + +L
Sbjct: 217 PLPGVSVADLRQVFQAFGDLKDVRESAQRPSHKFVDFFDTRDAARALAELNGQ---ELFG 273
Query: 90 RFLHISYS 97
R L + ++
Sbjct: 274 RRLVVEFT 281
>sp|A5DW14|PABP_LODEL Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Lodderomyces elongisporus (strain ATCC 11503 / CBS
2605 / JCM 1781 / NBRC 1676 / NRRL YB-4239) GN=PAB1 PE=3
SV=1
Length = 661
Score = 31.6 bits (70), Expect = 1.6, Method: Composition-based stats.
Identities = 23/63 (36%), Positives = 33/63 (52%), Gaps = 6/63 (9%)
Query: 22 NLFVANCGPAVGVSYEAIGSVFSAFGDVKGI-YAADDSGARV---IVSYFDEGSAQAAFN 77
N+F+ N PA+ +A+ FSAFG + + A DD G V Y E +AQAA
Sbjct: 156 NIFIKNLHPAI--DNKALHDTFSAFGKILSVKVATDDLGQSKCFGFVHYETEEAAQAAIE 213
Query: 78 SLH 80
S++
Sbjct: 214 SVN 216
>sp|Q9FGL9|PTBP2_ARATH Polypyrimidine tract-binding protein homolog 2 OS=Arabidopsis
thaliana GN=At5g53180 PE=2 SV=1
Length = 429
Score = 31.6 bits (70), Expect = 1.6, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 9/84 (10%)
Query: 33 GVSYEAIGSVFSAFGDVKGIYAAD-DSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRF 91
V+ + + VF+AFG+V+ I D + G + ++ Y D +A A +L D
Sbjct: 256 AVTLDVLHMVFAAFGEVQKIAMFDKNGGVQALIQYSDVQTAVVAKEALEGHCIYDGGFCK 315
Query: 92 LHISYSVLEDSPATRHITSSVPVS 115
LHI+YS RH S+ V+
Sbjct: 316 LHITYS--------RHTDLSIKVN 331
>sp|Q9WV25|PUF60_RAT Poly(U)-binding-splicing factor PUF60 OS=Rattus norvegicus GN=Puf60
PE=2 SV=2
Length = 564
Score = 31.2 bits (69), Expect = 1.9, Method: Composition-based stats.
Identities = 33/122 (27%), Positives = 59/122 (48%), Gaps = 11/122 (9%)
Query: 1 MGAPSNSRFRRP---KAGEDERSPN-LFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAAD 56
+G PSN +P + E+ R+ N ++VA+ +S + I SVF AFG +K A
Sbjct: 207 VGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQ--DLSDDDIKSVFEAFGKIKSCTLAR 264
Query: 57 D--SGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRFLHISYSVLEDSPATRHITSSVPV 114
D +G + + AQ++ +++ S DL ++L + +V +P +T + P
Sbjct: 265 DPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAV---TPPMPLLTPATPG 321
Query: 115 SL 116
L
Sbjct: 322 GL 323
>sp|Q5R469|PUF60_PONAB Poly(U)-binding-splicing factor PUF60 OS=Pongo abelii GN=PUF60 PE=2
SV=1
Length = 558
Score = 31.2 bits (69), Expect = 1.9, Method: Composition-based stats.
Identities = 33/122 (27%), Positives = 59/122 (48%), Gaps = 11/122 (9%)
Query: 1 MGAPSNSRFRRP---KAGEDERSPN-LFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAAD 56
+G PSN +P + E+ R+ N ++VA+ +S + I SVF AFG +K A
Sbjct: 201 VGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQ--DLSDDDIKSVFEAFGKIKSCTLAR 258
Query: 57 D--SGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRFLHISYSVLEDSPATRHITSSVPV 114
D +G + + AQ++ +++ S DL ++L + +V +P +T + P
Sbjct: 259 DPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAV---TPPMPLLTPATPG 315
Query: 115 SL 116
L
Sbjct: 316 GL 317
>sp|Q3UEB3|PUF60_MOUSE Poly(U)-binding-splicing factor PUF60 OS=Mus musculus GN=Puf60 PE=2
SV=2
Length = 564
Score = 31.2 bits (69), Expect = 1.9, Method: Composition-based stats.
Identities = 33/122 (27%), Positives = 59/122 (48%), Gaps = 11/122 (9%)
Query: 1 MGAPSNSRFRRP---KAGEDERSPN-LFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAAD 56
+G PSN +P + E+ R+ N ++VA+ +S + I SVF AFG +K A
Sbjct: 207 VGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQ--DLSDDDIKSVFEAFGKIKSCTLAR 264
Query: 57 D--SGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRFLHISYSVLEDSPATRHITSSVPV 114
D +G + + AQ++ +++ S DL ++L + +V +P +T + P
Sbjct: 265 DPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAV---TPPMPLLTPATPG 321
Query: 115 SL 116
L
Sbjct: 322 GL 323
>sp|Q9UHX1|PUF60_HUMAN Poly(U)-binding-splicing factor PUF60 OS=Homo sapiens GN=PUF60 PE=1
SV=1
Length = 559
Score = 31.2 bits (69), Expect = 2.1, Method: Composition-based stats.
Identities = 33/122 (27%), Positives = 59/122 (48%), Gaps = 11/122 (9%)
Query: 1 MGAPSNSRFRRP---KAGEDERSPN-LFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAAD 56
+G PSN +P + E+ R+ N ++VA+ +S + I SVF AFG +K A
Sbjct: 202 VGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQ--DLSDDDIKSVFEAFGKIKSCTLAR 259
Query: 57 D--SGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRFLHISYSVLEDSPATRHITSSVPV 114
D +G + + AQ++ +++ S DL ++L + +V +P +T + P
Sbjct: 260 DPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAV---TPPMPLLTPATPG 316
Query: 115 SL 116
L
Sbjct: 317 GL 318
>sp|Q2HJG2|PUF60_BOVIN Poly(U)-binding-splicing factor PUF60 OS=Bos taurus GN=PUF60 PE=2
SV=1
Length = 530
Score = 31.2 bits (69), Expect = 2.2, Method: Composition-based stats.
Identities = 33/122 (27%), Positives = 59/122 (48%), Gaps = 11/122 (9%)
Query: 1 MGAPSNSRFRRP---KAGEDERSPN-LFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAAD 56
+G PSN +P + E+ R+ N ++VA+ +S + I SVF AFG +K A
Sbjct: 173 VGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQ--DLSDDDIKSVFEAFGKIKSCTLAR 230
Query: 57 D--SGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRFLHISYSVLEDSPATRHITSSVPV 114
D +G + + AQ++ +++ S DL ++L + +V +P +T + P
Sbjct: 231 DPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAV---TPPMPLLTPATPG 287
Query: 115 SL 116
L
Sbjct: 288 GL 289
>sp|P11247|PERM_MOUSE Myeloperoxidase OS=Mus musculus GN=Mpo PE=2 SV=2
Length = 718
Score = 30.8 bits (68), Expect = 2.8, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 14/63 (22%)
Query: 41 SVFSAFGDVKGIYAADDSGAR-------------VIVSYFDEGSAQAAFNSLHSRPCPDL 87
+ ++F D G+Y ++D AR + + D G A F+SLH PC L
Sbjct: 305 NALTSFVDASGVYGSEDPLARKLRNLTNQLGLLAINTRFQDNGRALMPFDSLHDDPCL-L 363
Query: 88 ANR 90
NR
Sbjct: 364 TNR 366
>sp|A9NE96|FOLD_ACHLI Bifunctional protein FolD OS=Acholeplasma laidlawii (strain PG-8A)
GN=folD PE=3 SV=1
Length = 277
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 37/82 (45%), Gaps = 7/82 (8%)
Query: 49 VKG-IYAADDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRFLHISYSVLEDSPATRH 107
VKG + A + G V ++Y DE Q + +L + D + +L P +H
Sbjct: 44 VKGKLNTASNLGMEVHINYLDEAIDQLSVEALIQKLNTDKG------VHGILLQLPIPKH 97
Query: 108 ITSSVPVSLVASELNIPGLHSC 129
+ S +SL+ + ++ G H+
Sbjct: 98 LDSDYLISLIDYKKDVDGFHTM 119
>sp|Q6IQE0|PU60B_DANRE Poly(U)-binding-splicing factor PUF60-B OS=Danio rerio GN=puf60b
PE=2 SV=2
Length = 516
Score = 30.0 bits (66), Expect = 4.8, Method: Composition-based stats.
Identities = 27/105 (25%), Positives = 51/105 (48%), Gaps = 8/105 (7%)
Query: 15 GEDERSPN-LFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAADD--SGARVIVSYFDEGS 71
E+ R+ N ++VA+ P +S + I SVF AFG +K A + +G + +
Sbjct: 176 AEEARAYNRIYVASIHP--DLSDDDIKSVFEAFGKIKSCMLAREPTTGKHKGFGFIEYEK 233
Query: 72 AQAAFNSLHSRPCPDLANRFLHISYSVLEDSPATRHITSSVPVSL 116
Q++ +++ S DL ++L + +V +P +T + P L
Sbjct: 234 PQSSLDAVSSMNLFDLGGQYLRVGKAV---TPPMPLLTPTTPGGL 275
>sp|Q39192|SRK2D_ARATH Serine/threonine-protein kinase SRK2D OS=Arabidopsis thaliana
GN=SRK2D PE=1 SV=1
Length = 362
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Query: 89 NRFLHISYSVLED---SPATRHITSSVPVSLVASELNIPGLHS 128
R L ++YS+ ED SP RH+ S + V+ A+ + IP + S
Sbjct: 233 QRILSVTYSIPEDLHLSPECRHLISRIFVADPATRITIPEITS 275
>sp|Q6AYL5|SF3B4_RAT Splicing factor 3B subunit 4 OS=Rattus norvegicus GN=Sf3b4 PE=2
SV=1
Length = 424
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 40/89 (44%), Gaps = 5/89 (5%)
Query: 22 NLFVANCGPAVGVSYEAIGSVFSAFG---DVKGIYAADDSGARVIVSYFDEGSAQAAFNS 78
N+F+ N P + + + FSAFG I D+G ++ + S A+ +
Sbjct: 101 NIFIGNLDPEI--DEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAA 158
Query: 79 LHSRPCPDLANRFLHISYSVLEDSPATRH 107
+ + L NR + +SY+ +DS RH
Sbjct: 159 IEAMNGQYLCNRPITVSYAFKKDSKGERH 187
>sp|Q8QZY9|SF3B4_MOUSE Splicing factor 3B subunit 4 OS=Mus musculus GN=Sf3b4 PE=2 SV=1
Length = 424
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 40/89 (44%), Gaps = 5/89 (5%)
Query: 22 NLFVANCGPAVGVSYEAIGSVFSAFG---DVKGIYAADDSGARVIVSYFDEGSAQAAFNS 78
N+F+ N P + + + FSAFG I D+G ++ + S A+ +
Sbjct: 101 NIFIGNLDPEI--DEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAA 158
Query: 79 LHSRPCPDLANRFLHISYSVLEDSPATRH 107
+ + L NR + +SY+ +DS RH
Sbjct: 159 IEAMNGQYLCNRPITVSYAFKKDSKGERH 187
>sp|P42731|PABP2_ARATH Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PAB2
PE=1 SV=1
Length = 629
Score = 29.6 bits (65), Expect = 5.7, Method: Composition-based stats.
Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 12/75 (16%)
Query: 10 RRPKAGEDERSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAADDSGARV----IVS 65
RR AG N+F+ N ++ ++A+ FS+FG++ A DS + V
Sbjct: 119 RRSGAG------NIFIKNLDESI--DHKALHDTFSSFGNIVSCKVAVDSSGQSKGYGFVQ 170
Query: 66 YFDEGSAQAAFNSLH 80
Y +E SAQ A L+
Sbjct: 171 YANEESAQKAIEKLN 185
>sp|Q15427|SF3B4_HUMAN Splicing factor 3B subunit 4 OS=Homo sapiens GN=SF3B4 PE=1 SV=1
Length = 424
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 40/89 (44%), Gaps = 5/89 (5%)
Query: 22 NLFVANCGPAVGVSYEAIGSVFSAFG---DVKGIYAADDSGARVIVSYFDEGSAQAAFNS 78
N+F+ N P + + + FSAFG I D+G ++ + S A+ +
Sbjct: 101 NIFIGNLDPEI--DEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAA 158
Query: 79 LHSRPCPDLANRFLHISYSVLEDSPATRH 107
+ + L NR + +SY+ +DS RH
Sbjct: 159 IEAMNGQYLCNRPITVSYAFKKDSKGERH 187
>sp|Q1D7Y2|FOLD2_MYXXD Bifunctional protein FolD 2 OS=Myxococcus xanthus (strain DK 1622)
GN=folD2 PE=3 SV=1
Length = 288
Score = 29.6 bits (65), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 33/74 (44%), Gaps = 6/74 (8%)
Query: 54 AADDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRFLHISYSVLEDSPATRHITSSVP 113
AA++ G R + DEG QAA + + D A + +L P RHI V
Sbjct: 57 AAEEVGFRSWELHPDEGITQAALLEVIHQLNADPA------VHGILVQLPLPRHIDPDVI 110
Query: 114 VSLVASELNIPGLH 127
+S V E ++ G H
Sbjct: 111 ISAVKPEKDVDGFH 124
>sp|Q1GIC1|ISPG_RUEST 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Ruegeria
sp. (strain TM1040) GN=ispG PE=3 SV=1
Length = 377
Score = 29.3 bits (64), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 42/84 (50%), Gaps = 7/84 (8%)
Query: 16 EDERSPNLFVANCGPAVGVSYEAIGSVFSAFG-DVKG----IYAADDSGARVI-VSYFDE 69
E +S + V N P G + A+ ++ + D+KG + AA D+GA ++ VS DE
Sbjct: 13 ERRKSRQIHVGNV-PVGGDAPIAVQTMTNTLTTDIKGTIAQVQAAADAGADIVRVSVPDE 71
Query: 70 GSAQAAFNSLHSRPCPDLANRFLH 93
SA+A + P P +A+ H
Sbjct: 72 ASARALKEIVRESPVPIVADIHFH 95
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.133 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,038,263
Number of Sequences: 539616
Number of extensions: 1939171
Number of successful extensions: 4359
Number of sequences better than 100.0: 40
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 4333
Number of HSP's gapped (non-prelim): 51
length of query: 133
length of database: 191,569,459
effective HSP length: 99
effective length of query: 34
effective length of database: 138,147,475
effective search space: 4697014150
effective search space used: 4697014150
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)