Query 043011
Match_columns 133
No_of_seqs 180 out of 1101
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 11:54:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043011.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043011hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.9 7.9E-23 1.7E-27 162.3 11.4 106 19-132 2-112 (352)
2 TIGR01659 sex-lethal sex-letha 99.9 1.4E-22 3E-27 162.7 12.5 108 17-132 104-216 (346)
3 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.8 2.7E-20 5.8E-25 154.8 14.6 111 17-132 272-417 (481)
4 PLN03134 glycine-rich RNA-bind 99.8 1.6E-19 3.5E-24 128.9 12.6 81 16-101 30-115 (144)
5 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.8 6.6E-20 1.4E-24 152.4 12.0 108 19-132 1-119 (481)
6 TIGR01628 PABP-1234 polyadenyl 99.8 8.5E-20 1.8E-24 153.7 11.4 105 22-132 2-111 (562)
7 TIGR01645 half-pint poly-U bin 99.8 1.2E-19 2.5E-24 154.0 11.0 110 18-132 105-227 (612)
8 TIGR01622 SF-CC1 splicing fact 99.8 9.4E-19 2E-23 143.6 12.3 110 17-132 86-209 (457)
9 KOG0145 RNA-binding protein EL 99.8 1.8E-18 4E-23 132.8 10.9 108 16-131 37-149 (360)
10 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.8 1.4E-18 3E-23 138.0 10.2 77 20-101 269-350 (352)
11 KOG0148 Apoptosis-promoting RN 99.8 1.4E-18 3.1E-23 133.6 8.9 108 20-132 62-187 (321)
12 TIGR01648 hnRNP-R-Q heterogene 99.8 2.6E-18 5.7E-23 145.3 11.4 101 18-132 56-161 (578)
13 KOG0107 Alternative splicing f 99.8 2E-18 4.4E-23 125.5 8.0 78 19-101 9-86 (195)
14 PF00076 RRM_1: RNA recognitio 99.7 4.1E-18 8.9E-23 105.4 6.2 66 23-93 1-70 (70)
15 TIGR01628 PABP-1234 polyadenyl 99.7 1.2E-17 2.7E-22 140.6 10.9 109 19-132 87-201 (562)
16 KOG0121 Nuclear cap-binding pr 99.7 6.9E-18 1.5E-22 117.5 7.2 77 17-98 33-114 (153)
17 TIGR01642 U2AF_lg U2 snRNP aux 99.7 5.8E-17 1.3E-21 134.5 12.4 109 17-132 172-318 (509)
18 KOG0105 Alternative splicing f 99.7 4.2E-17 9.2E-22 120.0 9.2 106 18-128 4-134 (241)
19 TIGR01648 hnRNP-R-Q heterogene 99.7 5.3E-17 1.1E-21 137.4 10.8 106 18-131 231-363 (578)
20 KOG0109 RNA-binding protein LA 99.7 1.5E-17 3.3E-22 129.0 6.5 99 21-132 3-101 (346)
21 KOG0131 Splicing factor 3b, su 99.7 5.2E-17 1.1E-21 118.8 7.7 108 18-132 7-119 (203)
22 KOG0144 RNA-binding protein CU 99.7 8E-17 1.7E-21 130.3 9.1 112 17-132 31-147 (510)
23 KOG0114 Predicted RNA-binding 99.7 1.7E-16 3.6E-21 107.0 9.1 81 16-101 14-96 (124)
24 KOG4206 Spliceosomal protein s 99.7 2.4E-16 5.3E-21 118.3 10.1 111 17-132 6-169 (221)
25 KOG0122 Translation initiation 99.7 1.7E-16 3.8E-21 120.5 9.0 78 19-101 188-270 (270)
26 PLN03120 nucleic acid binding 99.7 3.1E-16 6.7E-21 120.9 10.5 76 20-101 4-81 (260)
27 TIGR01659 sex-lethal sex-letha 99.7 3.5E-16 7.7E-21 125.7 10.8 93 3-101 177-276 (346)
28 KOG0125 Ataxin 2-binding prote 99.7 2.7E-16 5.9E-21 123.6 9.1 78 19-101 95-175 (376)
29 TIGR01645 half-pint poly-U bin 99.7 6E-16 1.3E-20 131.5 11.5 78 19-101 203-285 (612)
30 PF13893 RRM_5: RNA recognitio 99.6 8.8E-16 1.9E-20 92.4 7.6 56 39-97 1-56 (56)
31 TIGR01642 U2AF_lg U2 snRNP aux 99.6 3E-15 6.4E-20 124.3 11.8 78 18-100 293-375 (509)
32 KOG4207 Predicted splicing fac 99.6 6.9E-16 1.5E-20 115.1 7.0 78 19-101 12-94 (256)
33 PF14259 RRM_6: RNA recognitio 99.6 1.6E-15 3.4E-20 94.6 7.2 66 23-93 1-70 (70)
34 KOG0111 Cyclophilin-type pepti 99.6 4.8E-16 1E-20 117.1 4.9 78 19-101 9-91 (298)
35 smart00362 RRM_2 RNA recogniti 99.6 4.5E-15 9.8E-20 90.4 8.3 69 22-95 1-72 (72)
36 KOG0117 Heterogeneous nuclear 99.6 7.6E-15 1.6E-19 119.2 11.4 100 18-131 81-186 (506)
37 PLN03213 repressor of silencin 99.6 3.4E-15 7.4E-20 123.0 9.2 80 16-100 6-88 (759)
38 TIGR01622 SF-CC1 splicing fact 99.6 4.1E-15 8.9E-20 122.1 9.4 76 19-99 185-265 (457)
39 KOG0148 Apoptosis-promoting RN 99.6 5.7E-15 1.2E-19 113.9 9.1 80 16-101 160-239 (321)
40 COG0724 RNA-binding proteins ( 99.6 1.8E-14 3.8E-19 107.0 11.2 107 20-131 115-247 (306)
41 KOG0113 U1 small nuclear ribon 99.6 1.6E-14 3.6E-19 112.4 9.1 81 16-101 97-182 (335)
42 cd00590 RRM RRM (RNA recogniti 99.6 4.2E-14 9E-19 86.5 8.9 70 22-96 1-74 (74)
43 PLN03121 nucleic acid binding 99.5 3.3E-14 7.1E-19 108.5 9.6 74 19-98 4-79 (243)
44 KOG0144 RNA-binding protein CU 99.5 7.5E-15 1.6E-19 119.0 5.5 83 19-103 123-209 (510)
45 smart00360 RRM RNA recognition 99.5 5.7E-14 1.2E-18 85.1 7.2 66 25-95 1-71 (71)
46 KOG0110 RNA-binding protein (R 99.5 3.6E-14 7.9E-19 120.2 8.2 103 23-132 518-636 (725)
47 KOG0124 Polypyrimidine tract-b 99.5 2.2E-14 4.9E-19 114.7 6.3 106 20-132 113-233 (544)
48 KOG0117 Heterogeneous nuclear 99.5 5.3E-14 1.1E-18 114.4 8.4 75 19-101 258-332 (506)
49 KOG0130 RNA-binding protein RB 99.5 5.3E-14 1.2E-18 99.0 7.3 78 20-102 72-154 (170)
50 KOG0149 Predicted RNA-binding 99.5 5.9E-14 1.3E-18 106.2 6.3 77 17-99 9-90 (247)
51 KOG0126 Predicted RNA-binding 99.5 4.8E-15 1E-19 108.7 -0.4 75 19-98 34-113 (219)
52 KOG0123 Polyadenylate-binding 99.5 2.5E-13 5.5E-18 110.0 9.2 96 21-132 2-99 (369)
53 KOG0127 Nucleolar protein fibr 99.5 2.5E-13 5.5E-18 112.8 8.6 79 18-101 115-197 (678)
54 KOG0132 RNA polymerase II C-te 99.4 4.4E-13 9.5E-18 114.8 8.5 99 15-119 416-516 (894)
55 KOG0123 Polyadenylate-binding 99.4 7.6E-13 1.7E-17 107.3 8.8 104 23-132 79-190 (369)
56 KOG0127 Nucleolar protein fibr 99.4 9.9E-13 2.1E-17 109.3 8.9 107 21-132 6-140 (678)
57 KOG0108 mRNA cleavage and poly 99.4 8E-13 1.7E-17 108.8 8.3 76 21-101 19-99 (435)
58 smart00361 RRM_1 RNA recogniti 99.4 9.5E-13 2.1E-17 82.8 6.6 56 36-94 2-69 (70)
59 KOG0109 RNA-binding protein LA 99.4 5.7E-13 1.2E-17 103.7 5.5 77 17-101 75-151 (346)
60 KOG4660 Protein Mei2, essentia 99.4 6.9E-13 1.5E-17 110.1 5.4 73 16-93 71-143 (549)
61 KOG0145 RNA-binding protein EL 99.4 6.3E-12 1.4E-16 97.0 9.7 76 20-100 278-358 (360)
62 KOG0153 Predicted RNA-binding 99.3 9.2E-12 2E-16 98.8 9.4 80 17-101 225-304 (377)
63 KOG0415 Predicted peptidyl pro 99.3 2.8E-12 6E-17 102.3 6.1 83 14-101 233-320 (479)
64 KOG1190 Polypyrimidine tract-b 99.3 1.6E-11 3.4E-16 99.3 10.0 108 20-131 297-436 (492)
65 KOG0124 Polypyrimidine tract-b 99.3 7.3E-12 1.6E-16 100.4 6.1 96 1-101 187-291 (544)
66 KOG0131 Splicing factor 3b, su 99.3 9.8E-12 2.1E-16 91.2 6.3 80 17-101 93-178 (203)
67 KOG0147 Transcriptional coacti 99.2 1.3E-11 2.9E-16 102.4 6.0 74 20-98 278-356 (549)
68 KOG0146 RNA-binding protein ET 99.2 2.9E-11 6.4E-16 93.6 7.1 82 18-101 17-102 (371)
69 KOG0110 RNA-binding protein (R 99.2 1.1E-11 2.4E-16 105.3 5.1 79 18-101 611-694 (725)
70 KOG4205 RNA-binding protein mu 99.2 5.3E-11 1.1E-15 94.4 6.4 108 19-132 5-120 (311)
71 KOG0151 Predicted splicing reg 99.1 2E-10 4.4E-15 98.0 7.9 81 15-100 169-257 (877)
72 KOG0146 RNA-binding protein ET 99.1 1.5E-10 3.2E-15 89.7 5.8 81 16-101 281-366 (371)
73 KOG0106 Alternative splicing f 99.1 1.3E-10 2.8E-15 87.8 5.0 103 21-131 2-121 (216)
74 KOG4212 RNA-binding protein hn 99.1 8.3E-10 1.8E-14 90.3 9.8 107 19-130 43-157 (608)
75 KOG1457 RNA binding protein (c 99.0 4.3E-09 9.4E-14 79.8 8.8 80 20-101 34-119 (284)
76 KOG4661 Hsp27-ERE-TATA-binding 98.9 2.1E-09 4.6E-14 90.4 7.1 79 18-101 403-486 (940)
77 KOG0533 RRM motif-containing p 98.9 7.7E-09 1.7E-13 79.6 9.1 78 19-101 82-163 (243)
78 KOG4208 Nucleolar RNA-binding 98.9 5.5E-09 1.2E-13 78.0 8.0 78 18-100 47-130 (214)
79 KOG4212 RNA-binding protein hn 98.9 3.4E-09 7.3E-14 86.8 7.4 75 16-97 532-608 (608)
80 KOG1190 Polypyrimidine tract-b 98.8 3E-08 6.6E-13 80.5 7.8 93 3-100 393-491 (492)
81 KOG0116 RasGAP SH3 binding pro 98.7 2.8E-08 6.1E-13 81.7 6.4 74 20-99 288-366 (419)
82 KOG4454 RNA binding protein (R 98.7 1.2E-08 2.7E-13 77.1 3.6 79 17-101 6-88 (267)
83 KOG4209 Splicing factor RNPS1, 98.7 4.6E-08 1E-12 74.9 6.1 80 16-101 97-181 (231)
84 KOG1456 Heterogeneous nuclear 98.7 1.6E-07 3.5E-12 75.8 9.2 88 11-101 111-200 (494)
85 KOG4206 Spliceosomal protein s 98.7 1.6E-07 3.5E-12 70.9 8.6 80 14-98 140-220 (221)
86 KOG1457 RNA binding protein (c 98.6 3.2E-08 7E-13 75.1 3.4 65 17-83 207-272 (284)
87 PF11608 Limkain-b1: Limkain b 98.6 5.3E-07 1.2E-11 58.8 7.9 71 21-101 3-78 (90)
88 KOG4205 RNA-binding protein mu 98.5 1.7E-07 3.6E-12 74.6 6.1 77 19-101 96-177 (311)
89 KOG4211 Splicing factor hnRNP- 98.5 1E-06 2.2E-11 73.0 10.6 108 19-133 9-127 (510)
90 KOG0129 Predicted RNA-binding 98.5 1.4E-06 3.1E-11 72.5 11.0 109 16-133 255-394 (520)
91 PF04059 RRM_2: RNA recognitio 98.5 1.1E-06 2.5E-11 58.8 8.6 79 21-101 2-88 (97)
92 KOG1548 Transcription elongati 98.5 4.8E-07 1E-11 72.2 7.5 75 20-99 134-220 (382)
93 KOG0226 RNA-binding proteins [ 98.4 2.8E-07 6.1E-12 71.0 4.4 78 18-100 188-270 (290)
94 COG5175 MOT2 Transcriptional r 98.4 8.5E-07 1.8E-11 71.0 6.4 76 20-100 114-203 (480)
95 KOG0106 Alternative splicing f 98.4 4.3E-07 9.2E-12 68.8 3.9 74 18-99 97-170 (216)
96 KOG0147 Transcriptional coacti 98.3 2.4E-06 5.1E-11 71.6 7.2 80 18-101 441-529 (549)
97 PF08777 RRM_3: RNA binding mo 98.2 5.6E-06 1.2E-10 56.2 7.1 59 21-82 2-60 (105)
98 KOG2416 Acinus (induces apopto 98.2 1.5E-06 3.2E-11 73.6 4.8 83 16-101 440-523 (718)
99 KOG1855 Predicted RNA-binding 98.2 2.2E-06 4.8E-11 70.2 4.8 61 18-80 229-307 (484)
100 KOG0120 Splicing factor U2AF, 98.1 4E-06 8.7E-11 70.3 4.3 79 18-101 287-370 (500)
101 KOG0120 Splicing factor U2AF, 98.1 1.3E-05 2.9E-10 67.2 7.0 83 15-100 394-492 (500)
102 PF14605 Nup35_RRM_2: Nup53/35 98.0 1.9E-05 4.2E-10 47.1 5.7 52 21-76 2-53 (53)
103 KOG1548 Transcription elongati 98.0 2E-05 4.4E-10 63.1 7.3 81 17-100 262-352 (382)
104 KOG0112 Large RNA-binding prot 98.0 2.1E-06 4.5E-11 75.4 1.6 107 16-132 368-478 (975)
105 KOG2202 U2 snRNP splicing fact 98.0 3.1E-06 6.8E-11 65.2 2.4 58 41-101 87-149 (260)
106 KOG4210 Nuclear localization s 98.0 7.3E-06 1.6E-10 64.6 4.2 79 17-101 181-265 (285)
107 KOG1456 Heterogeneous nuclear 98.0 0.0001 2.2E-09 59.9 10.4 113 15-131 282-428 (494)
108 KOG2193 IGF-II mRNA-binding pr 97.9 5.1E-06 1.1E-10 68.2 1.9 98 21-129 2-100 (584)
109 KOG0112 Large RNA-binding prot 97.8 4E-05 8.7E-10 67.6 6.5 80 16-101 451-532 (975)
110 KOG3152 TBP-binding protein, a 97.8 2.1E-05 4.6E-10 60.8 4.2 68 19-91 73-157 (278)
111 KOG2314 Translation initiation 97.7 0.00017 3.8E-09 61.1 7.7 74 19-95 57-139 (698)
112 KOG4307 RNA binding protein RB 97.5 0.00045 9.8E-09 60.0 8.0 71 21-96 868-943 (944)
113 PF08952 DUF1866: Domain of un 97.5 0.00048 1E-08 49.3 6.7 80 15-101 22-108 (146)
114 PF15023 DUF4523: Protein of u 97.4 0.0012 2.7E-08 47.2 7.4 74 16-97 82-159 (166)
115 KOG1995 Conserved Zn-finger pr 97.3 0.00053 1.1E-08 55.2 5.8 80 17-101 63-155 (351)
116 KOG0128 RNA-binding protein SA 97.3 2.9E-05 6.3E-10 68.1 -1.8 61 21-83 668-733 (881)
117 KOG1996 mRNA splicing factor [ 97.3 0.00072 1.6E-08 53.5 5.9 80 19-101 280-368 (378)
118 PF05172 Nup35_RRM: Nup53/35/4 97.1 0.0019 4.1E-08 43.5 6.1 73 20-99 6-91 (100)
119 PF04847 Calcipressin: Calcipr 97.1 0.0014 3E-08 48.7 5.7 63 35-101 8-72 (184)
120 PF03880 DbpA: DbpA RNA bindin 97.1 0.0047 1E-07 39.0 7.2 68 22-97 2-74 (74)
121 KOG4211 Splicing factor hnRNP- 96.9 0.005 1.1E-07 51.6 8.0 77 18-100 101-182 (510)
122 KOG0129 Predicted RNA-binding 96.9 0.0037 8E-08 52.6 7.0 70 7-78 357-432 (520)
123 KOG0128 RNA-binding protein SA 96.9 0.00063 1.4E-08 59.9 2.4 76 20-100 736-815 (881)
124 KOG4676 Splicing factor, argin 96.7 0.0029 6.3E-08 51.8 5.2 71 20-96 7-85 (479)
125 KOG4849 mRNA cleavage factor I 96.7 0.0018 3.9E-08 52.5 3.8 68 20-92 80-154 (498)
126 KOG4574 RNA-binding protein (c 96.7 0.0014 2.9E-08 58.0 2.9 81 19-101 285-375 (1007)
127 PF08675 RNA_bind: RNA binding 96.7 0.023 5.1E-07 37.1 8.0 56 20-81 9-64 (87)
128 KOG2068 MOT2 transcription fac 96.5 0.00078 1.7E-08 53.8 0.4 76 21-101 78-164 (327)
129 KOG1365 RNA-binding protein Fu 96.5 0.007 1.5E-07 49.6 5.7 76 18-98 278-360 (508)
130 PF10309 DUF2414: Protein of u 96.4 0.026 5.6E-07 34.8 6.7 53 21-79 6-62 (62)
131 KOG0115 RNA-binding protein p5 96.4 0.0051 1.1E-07 47.8 4.2 60 19-80 30-93 (275)
132 PF03467 Smg4_UPF3: Smg-4/UPF3 96.3 0.0078 1.7E-07 44.3 4.7 81 19-101 6-99 (176)
133 KOG2591 c-Mpl binding protein, 96.1 0.01 2.3E-07 50.5 4.8 72 18-94 173-246 (684)
134 PF07576 BRAP2: BRCA1-associat 96.0 0.24 5.1E-06 33.9 10.6 77 19-97 12-92 (110)
135 KOG4210 Nuclear localization s 95.5 0.015 3.3E-07 45.9 3.5 107 19-130 87-206 (285)
136 KOG4285 Mitotic phosphoprotein 95.2 0.15 3.2E-06 40.8 8.0 65 20-92 197-261 (350)
137 KOG2253 U1 snRNP complex, subu 95.1 0.025 5.4E-07 49.0 3.9 82 4-95 22-106 (668)
138 KOG0105 Alternative splicing f 94.8 0.28 6.1E-06 36.8 8.1 61 19-83 114-174 (241)
139 KOG4307 RNA binding protein RB 94.7 0.043 9.3E-07 48.2 4.0 78 18-100 432-514 (944)
140 PF11767 SET_assoc: Histone ly 94.3 0.31 6.6E-06 30.3 6.3 55 33-94 11-65 (66)
141 KOG0115 RNA-binding protein p5 94.0 0.084 1.8E-06 41.2 4.1 51 68-131 3-53 (275)
142 KOG2135 Proteins containing th 93.5 0.05 1.1E-06 45.7 2.2 75 20-100 372-446 (526)
143 KOG2318 Uncharacterized conser 93.4 0.53 1.2E-05 40.6 8.2 77 17-97 171-305 (650)
144 KOG4660 Protein Mei2, essentia 92.7 0.23 4.9E-06 42.4 5.0 45 57-101 429-474 (549)
145 PF10567 Nab6_mRNP_bdg: RNA-re 92.3 0.34 7.3E-06 38.5 5.2 85 12-99 7-107 (309)
146 KOG1365 RNA-binding protein Fu 91.9 0.67 1.4E-05 38.4 6.6 56 21-78 162-225 (508)
147 KOG4019 Calcineurin-mediated s 91.1 0.26 5.6E-06 36.6 3.2 78 20-101 10-91 (193)
148 KOG4676 Splicing factor, argin 89.3 0.053 1.2E-06 44.6 -1.8 61 20-83 151-212 (479)
149 KOG2193 IGF-II mRNA-binding pr 87.3 0.015 3.2E-07 48.4 -6.2 77 19-100 79-157 (584)
150 PRK14548 50S ribosomal protein 87.2 2.9 6.3E-05 27.2 5.7 55 22-78 22-80 (84)
151 KOG2891 Surface glycoprotein [ 86.5 0.27 5.7E-06 39.2 0.6 84 18-101 147-269 (445)
152 TIGR03636 L23_arch archaeal ri 86.1 3.9 8.5E-05 26.1 5.7 54 22-77 15-72 (77)
153 PF03439 Spt5-NGN: Early trans 85.6 1.9 4.1E-05 27.7 4.2 34 48-81 33-66 (84)
154 PLN03134 glycine-rich RNA-bind 84.0 0.94 2E-05 32.1 2.4 25 108-132 33-57 (144)
155 PF07292 NID: Nmi/IFP 35 domai 83.6 3.1 6.8E-05 27.3 4.6 66 62-129 1-72 (88)
156 PF02714 DUF221: Domain of unk 82.5 1.8 3.9E-05 34.1 3.7 35 62-101 1-35 (325)
157 KOG0804 Cytoplasmic Zn-finger 80.9 11 0.00024 31.9 7.8 69 19-89 73-145 (493)
158 KOG4410 5-formyltetrahydrofola 77.2 5.1 0.00011 32.1 4.6 50 20-72 330-380 (396)
159 PF15513 DUF4651: Domain of un 76.8 5.1 0.00011 24.6 3.6 18 37-54 9-26 (62)
160 PTZ00191 60S ribosomal protein 72.0 17 0.00037 26.0 5.8 53 21-75 82-138 (145)
161 COG5638 Uncharacterized conser 65.1 28 0.00062 29.4 6.5 77 17-97 143-295 (622)
162 PRK08559 nusG transcription an 64.9 25 0.00053 25.0 5.5 34 49-82 36-69 (153)
163 PF07292 NID: Nmi/IFP 35 domai 64.7 15 0.00032 24.1 4.0 25 16-42 48-72 (88)
164 TIGR00110 ilvD dihydroxy-acid 61.1 32 0.0007 29.8 6.4 61 20-101 355-419 (535)
165 KOG0121 Nuclear cap-binding pr 60.0 4.7 0.0001 28.7 1.0 23 109-131 36-58 (153)
166 PF11411 DNA_ligase_IV: DNA li 59.9 7.1 0.00015 21.3 1.5 15 34-48 21-35 (36)
167 PF08544 GHMP_kinases_C: GHMP 59.2 39 0.00084 20.6 5.8 43 37-80 37-80 (85)
168 PF11823 DUF3343: Protein of u 57.3 18 0.00039 22.2 3.3 24 60-83 2-25 (73)
169 KOG4483 Uncharacterized conser 57.0 42 0.00091 28.3 6.1 69 6-78 377-446 (528)
170 TIGR02542 B_forsyth_147 Bacter 56.7 20 0.00044 25.0 3.7 85 28-131 11-96 (145)
171 COG0724 RNA-binding proteins ( 54.9 19 0.00041 25.9 3.6 38 16-55 221-258 (306)
172 KOG4454 RNA binding protein (R 54.4 3.5 7.6E-05 31.8 -0.4 64 18-83 78-149 (267)
173 PRK08211 putative dehydratase; 53.0 82 0.0018 28.0 7.6 59 22-101 438-506 (655)
174 PF03468 XS: XS domain; Inter 52.8 9.3 0.0002 26.2 1.5 48 22-69 10-66 (116)
175 KOG0114 Predicted RNA-binding 51.9 14 0.0003 25.4 2.2 27 105-131 14-40 (124)
176 PRK00911 dihydroxy-acid dehydr 50.3 92 0.002 27.2 7.4 61 20-101 372-434 (552)
177 PRK06131 dihydroxy-acid dehydr 50.0 68 0.0015 28.1 6.6 63 20-101 373-439 (571)
178 COG0129 IlvD Dihydroxyacid deh 48.9 94 0.002 27.2 7.3 61 20-101 387-451 (575)
179 PRK11634 ATP-dependent RNA hel 48.1 83 0.0018 27.6 7.0 71 22-100 488-563 (629)
180 KOG2295 C2H2 Zn-finger protein 48.0 2.9 6.2E-05 36.2 -1.9 69 18-91 229-302 (648)
181 CHL00123 rps6 ribosomal protei 47.7 78 0.0017 20.7 5.4 53 21-77 9-80 (97)
182 KOG4008 rRNA processing protei 45.8 18 0.0004 28.1 2.3 37 16-54 36-72 (261)
183 TIGR03432 yjhG_yagF probable d 45.3 1.3E+02 0.0028 26.8 7.6 59 22-101 432-500 (640)
184 PF08734 GYD: GYD domain; Int 45.2 83 0.0018 20.3 5.8 45 36-80 22-68 (91)
185 KOG2187 tRNA uracil-5-methyltr 44.7 18 0.00039 31.2 2.3 58 40-100 44-101 (534)
186 KOG0533 RRM motif-containing p 44.5 14 0.0003 28.7 1.5 22 110-131 84-105 (243)
187 PRK12448 dihydroxy-acid dehydr 43.7 1.6E+02 0.0034 26.1 7.9 61 20-101 420-484 (615)
188 PRK05738 rplW 50S ribosomal pr 43.3 85 0.0018 20.4 5.0 32 21-54 20-53 (92)
189 KOG0122 Translation initiation 42.9 18 0.00039 28.3 1.9 25 108-132 188-212 (270)
190 PTZ00380 microtubule-associate 40.8 42 0.00091 23.3 3.3 38 21-70 71-108 (121)
191 PF08206 OB_RNB: Ribonuclease 40.7 23 0.0005 20.9 1.8 38 57-98 6-44 (58)
192 KOG0132 RNA polymerase II C-te 37.9 16 0.00035 33.0 1.1 24 109-132 421-444 (894)
193 KOG0125 Ataxin 2-binding prote 33.6 40 0.00086 27.6 2.6 23 110-132 97-119 (376)
194 PF15063 TC1: Thyroid cancer p 33.4 25 0.00055 22.5 1.1 29 19-49 24-52 (79)
195 PHA03008 hypothetical protein; 32.6 1.4E+02 0.0031 22.8 5.2 48 5-55 7-54 (234)
196 COG5353 Uncharacterized protei 31.9 2E+02 0.0044 20.9 5.9 47 21-69 88-152 (161)
197 cd04489 ExoVII_LU_OBF ExoVII_L 30.7 36 0.00078 20.6 1.6 22 47-70 6-27 (78)
198 COG5584 Predicted small secret 30.5 42 0.00092 22.5 1.9 26 27-54 29-54 (103)
199 KOG0156 Cytochrome P450 CYP2 s 30.0 1.4E+02 0.0031 25.4 5.5 66 19-92 31-97 (489)
200 PRK13016 dihydroxy-acid dehydr 30.0 1.8E+02 0.0039 25.6 6.1 63 20-101 378-444 (577)
201 KOG0643 Translation initiation 30.0 27 0.00058 27.9 1.1 29 34-62 275-303 (327)
202 COG0225 MsrA Peptide methionin 28.7 2.4E+02 0.0053 20.8 6.5 95 2-101 39-139 (174)
203 smart00457 MACPF membrane-atta 28.2 1.1E+02 0.0023 22.3 4.0 28 25-54 30-59 (194)
204 cd01611 GABARAP Ubiquitin doma 28.2 1E+02 0.0022 20.9 3.6 38 20-69 71-108 (112)
205 PF00313 CSD: 'Cold-shock' DNA 28.1 57 0.0012 19.3 2.1 15 56-70 9-23 (66)
206 PF00403 HMA: Heavy-metal-asso 28.1 1.2E+02 0.0027 17.2 6.0 45 22-69 1-45 (62)
207 PF09707 Cas_Cas2CT1978: CRISP 27.2 1.5E+02 0.0033 19.2 4.1 48 17-66 22-71 (86)
208 TIGR01873 cas_CT1978 CRISPR-as 27.2 1.1E+02 0.0023 20.0 3.3 49 17-68 22-74 (87)
209 COG4733 Phage-related protein, 27.2 50 0.0011 30.3 2.3 66 21-94 176-243 (952)
210 PRK00050 16S rRNA m(4)C1402 me 26.3 38 0.00082 27.0 1.3 18 34-51 139-156 (296)
211 PF12993 DUF3877: Domain of un 26.1 1.1E+02 0.0024 22.6 3.6 16 33-48 108-123 (175)
212 COG5470 Uncharacterized conser 26.1 1.6E+02 0.0035 19.6 4.1 37 40-76 26-70 (96)
213 TIGR00405 L26e_arch ribosomal 25.8 1.4E+02 0.0031 20.6 4.1 34 49-82 28-61 (145)
214 smart00773 WGR Proposed nuclei 25.4 71 0.0015 20.0 2.3 34 41-80 36-69 (84)
215 cd01612 APG12_C Ubiquitin-like 25.4 1.5E+02 0.0032 19.1 3.8 38 19-69 45-83 (87)
216 KOG3152 TBP-binding protein, a 25.1 48 0.001 26.2 1.6 25 107-131 72-96 (278)
217 TIGR00006 S-adenosyl-methyltra 24.5 42 0.00091 26.9 1.3 18 34-51 141-158 (305)
218 PF02518 HATPase_c: Histidine 24.1 1.1E+02 0.0023 19.5 3.0 28 21-50 38-65 (111)
219 PHA02104 hypothetical protein 24.1 87 0.0019 19.9 2.4 35 20-59 17-52 (89)
220 PF14893 PNMA: PNMA 23.9 60 0.0013 26.3 2.1 49 17-67 15-70 (331)
221 KOG0116 RasGAP SH3 binding pro 23.5 51 0.0011 27.7 1.7 23 110-132 289-311 (419)
222 cd08757 SAM_PNT_ESE Sterile al 23.4 40 0.00086 20.7 0.8 18 32-49 41-58 (68)
223 PF01823 MACPF: MAC/Perforin d 23.3 40 0.00088 24.3 0.9 28 25-54 53-85 (212)
224 PRK09937 stationary phase/star 23.0 82 0.0018 19.7 2.2 12 56-67 10-21 (74)
225 PF11181 YflT: Heat induced st 22.9 1.2E+02 0.0026 19.8 3.1 28 64-94 4-31 (103)
226 PRK12450 foldase protein PrsA; 22.9 1.9E+02 0.0041 22.9 4.7 38 34-80 133-170 (309)
227 cd08538 SAM_PNT-ESE-2-like Ste 22.4 45 0.00098 21.3 0.9 18 32-49 46-63 (78)
228 KOG1134 Uncharacterized conser 22.3 1.5E+02 0.0032 26.8 4.3 39 57-100 303-341 (728)
229 PRK15464 cold shock-like prote 22.3 77 0.0017 19.6 1.9 13 56-68 13-25 (70)
230 cd07996 WGR_MMR_like WGR domai 22.3 1.3E+02 0.0027 18.2 2.9 20 60-79 43-62 (74)
231 PF01071 GARS_A: Phosphoribosy 22.1 3.4E+02 0.0074 20.2 6.1 47 34-80 24-71 (194)
232 PF12631 GTPase_Cys_C: Catalyt 21.8 73 0.0016 19.6 1.8 13 34-46 60-72 (73)
233 cd04458 CSP_CDS Cold-Shock Pro 21.0 88 0.0019 18.4 2.0 19 47-68 3-21 (65)
234 PRK09507 cspE cold shock prote 20.9 92 0.002 19.0 2.1 13 56-68 12-24 (69)
235 PRK14998 cold shock-like prote 20.5 96 0.0021 19.3 2.1 13 56-68 10-22 (73)
236 PRK11230 glycolate oxidase sub 20.3 2.8E+02 0.006 23.6 5.4 47 36-82 203-257 (499)
237 PF09902 DUF2129: Uncharacteri 20.2 2.4E+02 0.0051 17.6 5.1 39 41-83 15-53 (71)
238 PF14111 DUF4283: Domain of un 20.1 68 0.0015 21.9 1.5 73 20-99 15-91 (153)
239 PRK10943 cold shock-like prote 20.1 95 0.0021 19.0 2.0 13 56-68 12-24 (69)
No 1
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.89 E-value=7.9e-23 Score=162.28 Aligned_cols=106 Identities=24% Similarity=0.292 Sum_probs=96.0
Q ss_pred CCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEc-----CCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCeeEE
Q 043011 19 RSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAA-----DDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRFLH 93 (133)
Q Consensus 19 ~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~-----~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~l~ 93 (133)
+..+|||+|||.+ +++++|+++|++||+|.+|++. ++++|||||+|.+.++|++|++.|||.. +.|+.|.
T Consensus 2 ~~~~l~V~nLp~~--~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~---l~g~~i~ 76 (352)
T TIGR01661 2 SKTNLIVNYLPQT--MTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLR---LQNKTIK 76 (352)
T ss_pred CCcEEEEeCCCCC--CCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEE---ECCeeEE
Confidence 5789999999999 9999999999999999999884 3578999999999999999999999999 9999999
Q ss_pred EEeeecCCCCCCCCCcceeEeeecCCCCCchhhhhhhcc
Q 043011 94 ISYSVLEDSPATRHITSSVPVSLVASELNIPGLHSCFMT 132 (133)
Q Consensus 94 V~~a~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~ 132 (133)
|+|+.+.. +.....+|+|+||+..++..+|+++|..
T Consensus 77 v~~a~~~~---~~~~~~~l~v~~l~~~~~~~~l~~~f~~ 112 (352)
T TIGR01661 77 VSYARPSS---DSIKGANLYVSGLPKTMTQHELESIFSP 112 (352)
T ss_pred EEeecccc---cccccceEEECCccccCCHHHHHHHHhc
Confidence 99998775 3334456999999999999999999974
No 2
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.89 E-value=1.4e-22 Score=162.65 Aligned_cols=108 Identities=17% Similarity=0.202 Sum_probs=95.9
Q ss_pred CCCCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEc-----CCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCee
Q 043011 17 DERSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAA-----DDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRF 91 (133)
Q Consensus 17 ~~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~-----~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~ 91 (133)
....++|||+||+++ +|+++|+++|++||+|++|++. ++++|||||+|.+.++|++|++.|||.. +.+++
T Consensus 104 ~~~~~~LfVgnLp~~--~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~---l~gr~ 178 (346)
T TIGR01659 104 NNSGTNLIVNYLPQD--MTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGIT---VRNKR 178 (346)
T ss_pred CCCCcEEEEeCCCCC--CCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCc---cCCce
Confidence 345789999999999 9999999999999999999874 3578999999999999999999999999 99999
Q ss_pred EEEEeeecCCCCCCCCCcceeEeeecCCCCCchhhhhhhcc
Q 043011 92 LHISYSVLEDSPATRHITSSVPVSLVASELNIPGLHSCFMT 132 (133)
Q Consensus 92 l~V~~a~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~ 132 (133)
|+|.|+.+.. +.....+|+|+|||..++..+|+++|..
T Consensus 179 i~V~~a~p~~---~~~~~~~lfV~nLp~~vtee~L~~~F~~ 216 (346)
T TIGR01659 179 LKVSYARPGG---ESIKDTNLYVTNLPRTITDDQLDTIFGK 216 (346)
T ss_pred eeeecccccc---cccccceeEEeCCCCcccHHHHHHHHHh
Confidence 9999998754 2223356999999999999999999964
No 3
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.85 E-value=2.7e-20 Score=154.77 Aligned_cols=111 Identities=15% Similarity=0.219 Sum_probs=96.2
Q ss_pred CCCCCeEEEeccCC-CCCCCHHHHHHHhhcCCCeeEEEEcCCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCeeEEEE
Q 043011 17 DERSPNLFVANCGP-AVGVSYEAIGSVFSAFGDVKGIYAADDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRFLHIS 95 (133)
Q Consensus 17 ~~~~~~L~V~Nl~~-~~~vte~~L~~~F~~fG~V~~v~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~l~V~ 95 (133)
..++.+|||+||++ . +|+++|+++|++||+|.+|++....+|||||+|.+.++|..|++.|||.. +.|++|+|.
T Consensus 272 ~~~~~~l~v~nL~~~~--vt~~~L~~lF~~yG~V~~vki~~~~~g~afV~f~~~~~A~~Ai~~lng~~---l~g~~l~v~ 346 (481)
T TIGR01649 272 GGPGSVLMVSGLHQEK--VNCDRLFNLFCVYGNVERVKFMKNKKETALIEMADPYQAQLALTHLNGVK---LFGKPLRVC 346 (481)
T ss_pred CCCCCEEEEeCCCCCC--CCHHHHHHHHHhcCCeEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCE---ECCceEEEE
Confidence 45789999999997 8 99999999999999999999877778999999999999999999999999 999999999
Q ss_pred eeecCC---CCC----------C---------------------CCCcceeEeeecCCCCCchhhhhhhcc
Q 043011 96 YSVLED---SPA----------T---------------------RHITSSVPVSLVASELNIPGLHSCFMT 132 (133)
Q Consensus 96 ~a~~~~---~~~----------~---------------------~~~~~~l~v~nl~~~~~~~~l~~~f~~ 132 (133)
+++.+. +++ + .....+|+|+|||.++++.+|+++|..
T Consensus 347 ~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~~ps~~L~v~NLp~~~tee~L~~lF~~ 417 (481)
T TIGR01649 347 PSKQQNVQPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQPPSATLHLSNIPLSVSEEDLKELFAE 417 (481)
T ss_pred EcccccccCCCCCcCcCCCcccccccCCccccCCCcccccccccCCCCcEEEEecCCCCCCHHHHHHHHHh
Confidence 986542 100 0 012357999999999999999999963
No 4
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.83 E-value=1.6e-19 Score=128.95 Aligned_cols=81 Identities=22% Similarity=0.293 Sum_probs=74.6
Q ss_pred CCCCCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEc-----CCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCe
Q 043011 16 EDERSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAA-----DDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANR 90 (133)
Q Consensus 16 ~~~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~-----~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr 90 (133)
....+++|||+||+++ +|+++|+++|++||+|.++.+. ++++|||||+|.+.++|++|++.|||+. +.|+
T Consensus 30 ~~~~~~~lfVgnL~~~--~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~---i~Gr 104 (144)
T PLN03134 30 LRLMSTKLFIGGLSWG--TDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKE---LNGR 104 (144)
T ss_pred ccCCCCEEEEeCCCCC--CCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCE---ECCE
Confidence 3556889999999999 9999999999999999999874 3579999999999999999999999999 9999
Q ss_pred eEEEEeeecCC
Q 043011 91 FLHISYSVLED 101 (133)
Q Consensus 91 ~l~V~~a~~~~ 101 (133)
.|+|+++.++.
T Consensus 105 ~l~V~~a~~~~ 115 (144)
T PLN03134 105 HIRVNPANDRP 115 (144)
T ss_pred EEEEEeCCcCC
Confidence 99999998765
No 5
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.83 E-value=6.6e-20 Score=152.44 Aligned_cols=108 Identities=19% Similarity=0.163 Sum_probs=92.6
Q ss_pred CCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEcCCCCCeEEEEECCHHHHHHHHHHh--cCCCCCCCCCeeEEEEe
Q 043011 19 RSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAADDSGARVIVSYFDEGSAQAAFNSL--HSRPCPDLANRFLHISY 96 (133)
Q Consensus 19 ~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~~~~kg~afV~f~~~~~A~~A~~~l--~g~~~~~l~gr~l~V~~ 96 (133)
|+++|||+||+++ +++++|+++|++||+|.++.+. ++||||||+|++.++|++|++.+ ++.. +.|++|+|+|
T Consensus 1 ps~vv~V~nLp~~--~te~~L~~~f~~fG~V~~v~i~-~~k~~afVef~~~e~A~~Ai~~~~~~~~~---l~g~~l~v~~ 74 (481)
T TIGR01649 1 PSPVVHVRNLPQD--VVEADLVEALIPFGPVSYVMML-PGKRQALVEFEDEESAKACVNFATSVPIY---IRGQPAFFNY 74 (481)
T ss_pred CccEEEEcCCCCC--CCHHHHHHHHHhcCCeeEEEEE-CCCCEEEEEeCchHHHHHHHHHhhcCCce---EcCeEEEEEe
Confidence 6899999999999 9999999999999999999884 57899999999999999999975 6778 9999999999
Q ss_pred eecCC-CCCC--------CCCcceeEeeecCCCCCchhhhhhhcc
Q 043011 97 SVLED-SPAT--------RHITSSVPVSLVASELNIPGLHSCFMT 132 (133)
Q Consensus 97 a~~~~-~~~~--------~~~~~~l~v~nl~~~~~~~~l~~~f~~ 132 (133)
+.++. .+.. .....+|+|+||+..++...|+++|..
T Consensus 75 s~~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~ 119 (481)
T TIGR01649 75 STSQEIKRDGNSDFDSAGPNKVLRVIVENPMYPITLDVLYQIFNP 119 (481)
T ss_pred cCCcccccCCCCcccCCCCCceEEEEEcCCCCCCCHHHHHHHHhc
Confidence 97654 1111 111135899999999999999999963
No 6
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.82 E-value=8.5e-20 Score=153.66 Aligned_cols=105 Identities=19% Similarity=0.295 Sum_probs=93.0
Q ss_pred eEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEc-----CCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCeeEEEEe
Q 043011 22 NLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAA-----DDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRFLHISY 96 (133)
Q Consensus 22 ~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~-----~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~l~V~~ 96 (133)
+|||+||+++ +||++|+++|++||+|.+|++. ++++|||||+|.+.++|++|++.||+.. +.|+.|+|.|
T Consensus 2 sl~VgnLp~~--vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~---i~gk~i~i~~ 76 (562)
T TIGR01628 2 SLYVGDLDPD--VTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKR---LGGKPIRIMW 76 (562)
T ss_pred eEEEeCCCCC--CCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCE---ECCeeEEeec
Confidence 7999999999 9999999999999999999984 4578999999999999999999999999 9999999999
Q ss_pred eecCCCCCCCCCcceeEeeecCCCCCchhhhhhhcc
Q 043011 97 SVLEDSPATRHITSSVPVSLVASELNIPGLHSCFMT 132 (133)
Q Consensus 97 a~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~ 132 (133)
+..... ......++|+|+||+.+++..+|+++|..
T Consensus 77 s~~~~~-~~~~~~~~vfV~nLp~~~~~~~L~~~F~~ 111 (562)
T TIGR01628 77 SQRDPS-LRRSGVGNIFVKNLDKSVDNKALFDTFSK 111 (562)
T ss_pred cccccc-ccccCCCceEEcCCCccCCHHHHHHHHHh
Confidence 865542 12223457999999999999999999964
No 7
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.81 E-value=1.2e-19 Score=153.99 Aligned_cols=110 Identities=17% Similarity=0.229 Sum_probs=93.8
Q ss_pred CCCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEc-----CCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCeeE
Q 043011 18 ERSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAA-----DDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRFL 92 (133)
Q Consensus 18 ~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~-----~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~l 92 (133)
...++|||+||+++ +++++|+++|++||+|.+|++. ++++|||||+|.+.++|++|++.|||+. +.||.|
T Consensus 105 ~~~~rLfVGnLp~~--~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~---i~GR~I 179 (612)
T TIGR01645 105 AIMCRVYVGSISFE--LREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQM---LGGRNI 179 (612)
T ss_pred cCCCEEEEcCCCCC--CCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeE---Eeccee
Confidence 35689999999999 9999999999999999999873 4689999999999999999999999999 999999
Q ss_pred EEEeeecCCCC--------CCCCCcceeEeeecCCCCCchhhhhhhcc
Q 043011 93 HISYSVLEDSP--------ATRHITSSVPVSLVASELNIPGLHSCFMT 132 (133)
Q Consensus 93 ~V~~a~~~~~~--------~~~~~~~~l~v~nl~~~~~~~~l~~~f~~ 132 (133)
+|.+....... .......+|+|+||+..++..+|+++|..
T Consensus 180 kV~rp~~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~ 227 (612)
T TIGR01645 180 KVGRPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEA 227 (612)
T ss_pred eecccccccccccccccccccccccceEEeecCCCCCCHHHHHHHHhh
Confidence 99875433210 11122357999999999999999999963
No 8
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.79 E-value=9.4e-19 Score=143.58 Aligned_cols=110 Identities=17% Similarity=0.180 Sum_probs=93.9
Q ss_pred CCCCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEc-----CCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCee
Q 043011 17 DERSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAA-----DDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRF 91 (133)
Q Consensus 17 ~~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~-----~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~ 91 (133)
..+.++|||+||+.. +++++|+++|++||+|.+|.+. ++++|||||+|.+.++|.+|+. |+|+. +.|++
T Consensus 86 ~~~~~~l~V~nlp~~--~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~---~~g~~ 159 (457)
T TIGR01622 86 ERDDRTVFVLQLALK--ARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQM---LLGRP 159 (457)
T ss_pred ccCCcEEEEeCCCCC--CCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCE---ECCee
Confidence 345789999999999 9999999999999999999984 4579999999999999999996 99999 99999
Q ss_pred EEEEeeecCCCC---------CCCCCcceeEeeecCCCCCchhhhhhhcc
Q 043011 92 LHISYSVLEDSP---------ATRHITSSVPVSLVASELNIPGLHSCFMT 132 (133)
Q Consensus 92 l~V~~a~~~~~~---------~~~~~~~~l~v~nl~~~~~~~~l~~~f~~ 132 (133)
|.|+++...... .......+|+|+||+..++..+|.++|..
T Consensus 160 i~v~~~~~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~ 209 (457)
T TIGR01622 160 IIVQSSQAEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFEP 209 (457)
T ss_pred eEEeecchhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHh
Confidence 999987654310 01112467999999999999999999964
No 9
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.78 E-value=1.8e-18 Score=132.77 Aligned_cols=108 Identities=21% Similarity=0.297 Sum_probs=99.1
Q ss_pred CCCCCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEc-----CCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCe
Q 043011 16 EDERSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAA-----DDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANR 90 (133)
Q Consensus 16 ~~~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~-----~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr 90 (133)
..+...+|.|.-||.+ +|+||||.+|+..|+|+++++. +.+-||+||.|-+.+||++|++.|||.. +..+
T Consensus 37 t~~skTNLIvNYLPQ~--MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLr---LQ~K 111 (360)
T KOG0145|consen 37 TDESKTNLIVNYLPQN--MTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLR---LQNK 111 (360)
T ss_pred cCcccceeeeeecccc--cCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhccee---eccc
Confidence 4566778999999999 9999999999999999999874 4577999999999999999999999999 9999
Q ss_pred eEEEEeeecCCCCCCCCCcceeEeeecCCCCCchhhhhhhc
Q 043011 91 FLHISYSVLEDSPATRHITSSVPVSLVASELNIPGLHSCFM 131 (133)
Q Consensus 91 ~l~V~~a~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~ 131 (133)
.|+|.||+|.. +.+...+|+|+.||.+++..+|.+||.
T Consensus 112 TIKVSyARPSs---~~Ik~aNLYvSGlPktMtqkelE~iFs 149 (360)
T KOG0145|consen 112 TIKVSYARPSS---DSIKDANLYVSGLPKTMTQKELEQIFS 149 (360)
T ss_pred eEEEEeccCCh---hhhcccceEEecCCccchHHHHHHHHH
Confidence 99999999988 566667799999999999999999996
No 10
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.78 E-value=1.4e-18 Score=137.95 Aligned_cols=77 Identities=25% Similarity=0.335 Sum_probs=71.7
Q ss_pred CCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEc-----CCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCeeEEE
Q 043011 20 SPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAA-----DDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRFLHI 94 (133)
Q Consensus 20 ~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~-----~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~l~V 94 (133)
+.+|||+||+++ +++++|+++|++||.|.++++. +.+||||||+|.+.++|.+|+..|||.. +.||.|+|
T Consensus 269 ~~~lfV~NL~~~--~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~---~~gr~i~V 343 (352)
T TIGR01661 269 GYCIFVYNLSPD--TDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYT---LGNRVLQV 343 (352)
T ss_pred CcEEEEeCCCCC--CCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCE---ECCeEEEE
Confidence 457999999999 9999999999999999999884 4579999999999999999999999999 99999999
Q ss_pred EeeecCC
Q 043011 95 SYSVLED 101 (133)
Q Consensus 95 ~~a~~~~ 101 (133)
+|...+.
T Consensus 344 ~~~~~~~ 350 (352)
T TIGR01661 344 SFKTNKA 350 (352)
T ss_pred EEccCCC
Confidence 9998764
No 11
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.77 E-value=1.4e-18 Score=133.60 Aligned_cols=108 Identities=21% Similarity=0.304 Sum_probs=95.4
Q ss_pred CCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEc-----CCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCeeEEE
Q 043011 20 SPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAA-----DDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRFLHI 94 (133)
Q Consensus 20 ~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~-----~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~l~V 94 (133)
.-.+||+.|.+. ++.|+||+.|.+||+|.+.++. .|+|||+||.|.+.++|++||..|||+. |++|.|+-
T Consensus 62 hfhvfvgdls~e--I~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqW---lG~R~IRT 136 (321)
T KOG0148|consen 62 HFHVFVGDLSPE--IDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQW---LGRRTIRT 136 (321)
T ss_pred ceeEEehhcchh--cchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCee---eccceeec
Confidence 457899999999 9999999999999999998873 5799999999999999999999999999 99999999
Q ss_pred EeeecCCCC-------------CCCCCcceeEeeecCCCCCchhhhhhhcc
Q 043011 95 SYSVLEDSP-------------ATRHITSSVPVSLVASELNIPGLHSCFMT 132 (133)
Q Consensus 95 ~~a~~~~~~-------------~~~~~~~~l~v~nl~~~~~~~~l~~~f~~ 132 (133)
.||..|+.. .....+-++++||+++.++...+|..|.+
T Consensus 137 NWATRKp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~ 187 (321)
T KOG0148|consen 137 NWATRKPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSP 187 (321)
T ss_pred cccccCccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhccc
Confidence 999887610 12334457999999999999999999975
No 12
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.77 E-value=2.6e-18 Score=145.29 Aligned_cols=101 Identities=15% Similarity=0.198 Sum_probs=89.8
Q ss_pred CCCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEc----CCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCC-CeeE
Q 043011 18 ERSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAA----DDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLA-NRFL 92 (133)
Q Consensus 18 ~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~----~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~-gr~l 92 (133)
...++|||+||+++ ++|++|+++|++||.|.++++. +++||||||+|.+.++|++|++.|||.. +. |+.|
T Consensus 56 ~~~~~lFVgnLp~~--~tEd~L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~---i~~Gr~l 130 (578)
T TIGR01648 56 GRGCEVFVGKIPRD--LYEDELVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYE---IRPGRLL 130 (578)
T ss_pred CCCCEEEeCCCCCC--CCHHHHHHHHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCe---ecCCccc
Confidence 34689999999999 9999999999999999999874 4689999999999999999999999998 75 7888
Q ss_pred EEEeeecCCCCCCCCCcceeEeeecCCCCCchhhhhhhcc
Q 043011 93 HISYSVLEDSPATRHITSSVPVSLVASELNIPGLHSCFMT 132 (133)
Q Consensus 93 ~V~~a~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~ 132 (133)
.|..+.. ..+|+|+|||..++..+|++.|..
T Consensus 131 ~V~~S~~---------~~rLFVgNLP~~~TeeeL~eeFsk 161 (578)
T TIGR01648 131 GVCISVD---------NCRLFVGGIPKNKKREEILEEFSK 161 (578)
T ss_pred ccccccc---------CceeEeecCCcchhhHHHHHHhhc
Confidence 8876532 356999999999999999998864
No 13
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.76 E-value=2e-18 Score=125.51 Aligned_cols=78 Identities=17% Similarity=0.344 Sum_probs=74.5
Q ss_pred CCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEcCCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCeeEEEEeee
Q 043011 19 RSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAADDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRFLHISYSV 98 (133)
Q Consensus 19 ~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~l~V~~a~ 98 (133)
-.++||||||+.. +++.||..+|.+||+|.+|++.....|||||+|+|..+|+.|+..|+|+. |+|..++|+++.
T Consensus 9 ~~~kVYVGnL~~~--a~k~eLE~~F~~yG~lrsvWvArnPPGfAFVEFed~RDA~DAvr~LDG~~---~cG~r~rVE~S~ 83 (195)
T KOG0107|consen 9 GNTKVYVGNLGSR--ATKRELERAFSKYGPLRSVWVARNPPGFAFVEFEDPRDAEDAVRYLDGKD---ICGSRIRVELST 83 (195)
T ss_pred CCceEEeccCCCC--cchHHHHHHHHhcCcceeEEEeecCCCceEEeccCcccHHHHHhhcCCcc---ccCceEEEEeec
Confidence 3789999999999 99999999999999999999988889999999999999999999999999 999999999997
Q ss_pred cCC
Q 043011 99 LED 101 (133)
Q Consensus 99 ~~~ 101 (133)
-..
T Consensus 84 G~~ 86 (195)
T KOG0107|consen 84 GRP 86 (195)
T ss_pred CCc
Confidence 665
No 14
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.74 E-value=4.1e-18 Score=105.38 Aligned_cols=66 Identities=27% Similarity=0.469 Sum_probs=61.8
Q ss_pred EEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEcC----CCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCeeEE
Q 043011 23 LFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAAD----DSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRFLH 93 (133)
Q Consensus 23 L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~~----~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~l~ 93 (133)
|||+|||++ +|+++|+++|++||+|..+.+.. ..+|+|||+|.+.++|+.|++.|||.. +.|+.|+
T Consensus 1 l~v~nlp~~--~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~---~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPD--VTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKK---INGRKIR 70 (70)
T ss_dssp EEEESETTT--SSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEE---ETTEEEE
T ss_pred cEEcCCCCc--CCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCE---ECccCcC
Confidence 799999999 99999999999999999998743 468999999999999999999999999 9999986
No 15
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.74 E-value=1.2e-17 Score=140.57 Aligned_cols=109 Identities=21% Similarity=0.238 Sum_probs=94.0
Q ss_pred CCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEc----CCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCeeEEE
Q 043011 19 RSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAA----DDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRFLHI 94 (133)
Q Consensus 19 ~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~----~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~l~V 94 (133)
...+|||+||+.+ +++++|+++|++||+|.++.+. ++++|||||+|.+.++|++|++.|||.. +.|+.|.|
T Consensus 87 ~~~~vfV~nLp~~--~~~~~L~~~F~~~G~i~~~~i~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~---~~~~~i~v 161 (562)
T TIGR01628 87 GVGNIFVKNLDKS--VDNKALFDTFSKFGNILSCKVATDENGKSRGYGFVHFEKEESAKAAIQKVNGML---LNDKEVYV 161 (562)
T ss_pred CCCceEEcCCCcc--CCHHHHHHHHHhcCCcceeEeeecCCCCcccEEEEEECCHHHHHHHHHHhcccE---ecCceEEE
Confidence 3568999999999 9999999999999999999874 3579999999999999999999999999 99999999
Q ss_pred EeeecCCCCC--CCCCcceeEeeecCCCCCchhhhhhhcc
Q 043011 95 SYSVLEDSPA--TRHITSSVPVSLVASELNIPGLHSCFMT 132 (133)
Q Consensus 95 ~~a~~~~~~~--~~~~~~~l~v~nl~~~~~~~~l~~~f~~ 132 (133)
....++..+. ......+|+|+||+.+++..+|+++|..
T Consensus 162 ~~~~~~~~~~~~~~~~~~~l~V~nl~~~~tee~L~~~F~~ 201 (562)
T TIGR01628 162 GRFIKKHEREAAPLKKFTNLYVKNLDPSVNEDKLRELFAK 201 (562)
T ss_pred eccccccccccccccCCCeEEEeCCCCcCCHHHHHHHHHh
Confidence 8776654221 2223356999999999999999999964
No 16
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.74 E-value=6.9e-18 Score=117.47 Aligned_cols=77 Identities=22% Similarity=0.351 Sum_probs=71.1
Q ss_pred CCCCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEc-----CCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCee
Q 043011 17 DERSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAA-----DDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRF 91 (133)
Q Consensus 17 ~~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~-----~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~ 91 (133)
...++|||||||+.. ++||+|+++|+++|+|+.|.|- ....|||||+|.+.++|+.|++.++|+. ++.|+
T Consensus 33 ~r~S~tvyVgNlSfy--ttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~Alryisgtr---Lddr~ 107 (153)
T KOG0121|consen 33 LRKSCTVYVGNLSFY--TTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTR---LDDRP 107 (153)
T ss_pred HhhcceEEEeeeeee--ecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCc---ccccc
Confidence 456899999999999 9999999999999999999883 3468999999999999999999999999 99999
Q ss_pred EEEEeee
Q 043011 92 LHISYSV 98 (133)
Q Consensus 92 l~V~~a~ 98 (133)
|+|+|..
T Consensus 108 ir~D~D~ 114 (153)
T KOG0121|consen 108 IRIDWDA 114 (153)
T ss_pred eeeeccc
Confidence 9999864
No 17
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.72 E-value=5.8e-17 Score=134.49 Aligned_cols=109 Identities=15% Similarity=0.144 Sum_probs=87.3
Q ss_pred CCCCCeEEEeccCCCCCCCHHHHHHHhhcC------------CCeeEEEEcCCCCCeEEEEECCHHHHHHHHHHhcCCCC
Q 043011 17 DERSPNLFVANCGPAVGVSYEAIGSVFSAF------------GDVKGIYAADDSGARVIVSYFDEGSAQAAFNSLHSRPC 84 (133)
Q Consensus 17 ~~~~~~L~V~Nl~~~~~vte~~L~~~F~~f------------G~V~~v~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~~ 84 (133)
....++||||||+++ +|+++|+++|.+| +.|..+.+ .+.+|||||+|.+.++|..|+ +|||..
T Consensus 172 ~~~~r~lyVgnLp~~--~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~-~~~kg~afVeF~~~e~A~~Al-~l~g~~- 246 (509)
T TIGR01642 172 TRQARRLYVGGIPPE--FVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI-NKEKNFAFLEFRTVEEATFAM-ALDSII- 246 (509)
T ss_pred CccccEEEEeCCCCC--CCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE-CCCCCEEEEEeCCHHHHhhhh-cCCCeE-
Confidence 345789999999999 9999999999985 34666666 678999999999999999999 599999
Q ss_pred CCCCCeeEEEEeeecCCCCC--------------------------CCCCcceeEeeecCCCCCchhhhhhhcc
Q 043011 85 PDLANRFLHISYSVLEDSPA--------------------------TRHITSSVPVSLVASELNIPGLHSCFMT 132 (133)
Q Consensus 85 ~~l~gr~l~V~~a~~~~~~~--------------------------~~~~~~~l~v~nl~~~~~~~~l~~~f~~ 132 (133)
+.|+.|.|.......+.. ......+|+|+|||..++..+|+++|..
T Consensus 247 --~~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~ 318 (509)
T TIGR01642 247 --YSNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLES 318 (509)
T ss_pred --eeCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHh
Confidence 999999996432111000 0112356999999999999999999974
No 18
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.71 E-value=4.2e-17 Score=119.96 Aligned_cols=106 Identities=18% Similarity=0.219 Sum_probs=89.1
Q ss_pred CCCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEcCC--CCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCeeEEEE
Q 043011 18 ERSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAADD--SGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRFLHIS 95 (133)
Q Consensus 18 ~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~~~--~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~l~V~ 95 (133)
..+++|||+|||.+ +.+.||.++|.+||.|..|.+... .-.||||+|+|..+|+.||..-+|.. ++|..|+|+
T Consensus 4 r~~~~iyvGNLP~d--iRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYd---ydg~rLRVE 78 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGD--IREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYD---YDGCRLRVE 78 (241)
T ss_pred cccceEEecCCCcc--hhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccc---cCcceEEEE
Confidence 46789999999999 999999999999999999988432 35799999999999999999999999 999999999
Q ss_pred eeecCCC-----------------------CCCCCCcceeEeeecCCCCCchhhhh
Q 043011 96 YSVLEDS-----------------------PATRHITSSVPVSLVASELNIPGLHS 128 (133)
Q Consensus 96 ~a~~~~~-----------------------~~~~~~~~~l~v~nl~~~~~~~~l~~ 128 (133)
|+..-.+ +.....+-.+.|..||++-+|++|..
T Consensus 79 fprggr~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKD 134 (241)
T KOG0105|consen 79 FPRGGRSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKD 134 (241)
T ss_pred eccCCCcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHH
Confidence 9875420 01112223489999999999999975
No 19
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.71 E-value=5.3e-17 Score=137.39 Aligned_cols=106 Identities=17% Similarity=0.151 Sum_probs=90.3
Q ss_pred CCCCeEEEeccCCCCCCCHHHHHHHhhcC--CCeeEEEEcCCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCeeEEEE
Q 043011 18 ERSPNLFVANCGPAVGVSYEAIGSVFSAF--GDVKGIYAADDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRFLHIS 95 (133)
Q Consensus 18 ~~~~~L~V~Nl~~~~~vte~~L~~~F~~f--G~V~~v~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~l~V~ 95 (133)
...++|||+||+.+ +|+++|+++|++| |+|++|.+ .++||||+|.+.++|++|++.|||+. |.|+.|+|+
T Consensus 231 ~~~k~LfVgNL~~~--~tee~L~~~F~~f~~G~I~rV~~---~rgfAFVeF~s~e~A~kAi~~lnG~~---i~Gr~I~V~ 302 (578)
T TIGR01648 231 AKVKILYVRNLMTT--TTEEIIEKSFSEFKPGKVERVKK---IRDYAFVHFEDREDAVKAMDELNGKE---LEGSEIEVT 302 (578)
T ss_pred ccccEEEEeCCCCC--CCHHHHHHHHHhcCCCceEEEEe---ecCeEEEEeCCHHHHHHHHHHhCCCE---ECCEEEEEE
Confidence 34689999999999 9999999999999 99999987 47899999999999999999999999 999999999
Q ss_pred eeecCCCC------------CC-------------CCCcceeEeeecCCCCCchhhhhhhc
Q 043011 96 YSVLEDSP------------AT-------------RHITSSVPVSLVASELNIPGLHSCFM 131 (133)
Q Consensus 96 ~a~~~~~~------------~~-------------~~~~~~l~v~nl~~~~~~~~l~~~f~ 131 (133)
|+++.+.. .+ .....++.++|++...+.+-+.++|.
T Consensus 303 ~Akp~~~~~~~~~~rg~gg~~~~~~~~~~~~g~~~sp~s~~~~~g~~~~~~~~~~~~~~f~ 363 (578)
T TIGR01648 303 LAKPVDKKSYVRYTRGTGGRGKERQAARQSLGQVYDPASRSLAYEDYYYHPPYAPSLHFPR 363 (578)
T ss_pred EccCCCcccccccccccCCCcccccccccccCcccCccccccccccccccccccchhhccc
Confidence 99886421 00 11235688999988888888888775
No 20
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.71 E-value=1.5e-17 Score=129.03 Aligned_cols=99 Identities=18% Similarity=0.209 Sum_probs=90.8
Q ss_pred CeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEcCCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCeeEEEEeeecC
Q 043011 21 PNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAADDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRFLHISYSVLE 100 (133)
Q Consensus 21 ~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~l~V~~a~~~ 100 (133)
-+||||||+.. +++.+|+.+|++||+|.++.+ -|.|+||..+|...|+.|+++|||.. |.|..|.|+-|+.+
T Consensus 3 ~KLFIGNLp~~--~~~~elr~lFe~ygkVlECDI---vKNYgFVHiEdktaaedairNLhgYt---Lhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPRE--ATEQELRSLFEQYGKVLECDI---VKNYGFVHIEDKTAAEDAIRNLHGYT---LHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcc--cchHHHHHHHHhhCceEeeee---ecccceEEeecccccHHHHhhcccce---ecceEEEEEecccc
Confidence 47999999999 999999999999999999998 46799999999999999999999999 99999999998887
Q ss_pred CCCCCCCCcceeEeeecCCCCCchhhhhhhcc
Q 043011 101 DSPATRHITSSVPVSLVASELNIPGLHSCFMT 132 (133)
Q Consensus 101 ~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~ 132 (133)
+ |...+ |.|+|+.+++..++|+..|..
T Consensus 75 s---k~stk--l~vgNis~tctn~ElRa~fe~ 101 (346)
T KOG0109|consen 75 S---KASTK--LHVGNISPTCTNQELRAKFEK 101 (346)
T ss_pred C---CCccc--cccCCCCccccCHHHhhhhcc
Confidence 5 44444 999999999999999999963
No 21
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.70 E-value=5.2e-17 Score=118.79 Aligned_cols=108 Identities=18% Similarity=0.191 Sum_probs=94.7
Q ss_pred CCCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEc-----CCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCeeE
Q 043011 18 ERSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAA-----DDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRFL 92 (133)
Q Consensus 18 ~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~-----~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~l 92 (133)
....||||+||++. ++++-|+++|-+.|+|.+++++ ...+||||++|.++++|+-|++-||... |.||+|
T Consensus 7 nqd~tiyvgnld~k--vs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~Vk---LYgrpI 81 (203)
T KOG0131|consen 7 NQDATLYVGNLDEK--VSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVK---LYGRPI 81 (203)
T ss_pred CCCceEEEecCCHH--HHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHH---hcCcee
Confidence 45789999999999 9999999999999999999985 3479999999999999999999999888 999999
Q ss_pred EEEeeecCCCCCCCCCcceeEeeecCCCCCchhhhhhhcc
Q 043011 93 HISYSVLEDSPATRHITSSVPVSLVASELNIPGLHSCFMT 132 (133)
Q Consensus 93 ~V~~a~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~ 132 (133)
+|.-+.... .+......++|+||++.++..-|+.+|..
T Consensus 82 rv~kas~~~--~nl~vganlfvgNLd~~vDe~~L~dtFsa 119 (203)
T KOG0131|consen 82 RVNKASAHQ--KNLDVGANLFVGNLDPEVDEKLLYDTFSA 119 (203)
T ss_pred EEEeccccc--ccccccccccccccCcchhHHHHHHHHHh
Confidence 999887222 23344467999999999999999999864
No 22
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.69 E-value=8e-17 Score=130.29 Aligned_cols=112 Identities=19% Similarity=0.261 Sum_probs=94.4
Q ss_pred CCCCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEc-----CCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCee
Q 043011 17 DERSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAA-----DDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRF 91 (133)
Q Consensus 17 ~~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~-----~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~ 91 (133)
+...-+||||.+|.. .+|.||+++|++||.|.+|.+. +.++|||||.|.+.++|.+|+++||++..-.=...+
T Consensus 31 d~~~vKlfVgqIprt--~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~p 108 (510)
T KOG0144|consen 31 DGSAVKLFVGQIPRT--ASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHP 108 (510)
T ss_pred CchhhhheeccCCcc--ccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcc
Confidence 345679999999999 9999999999999999999874 347999999999999999999999988743334578
Q ss_pred EEEEeeecCCCCCCCCCcceeEeeecCCCCCchhhhhhhcc
Q 043011 92 LHISYSVLEDSPATRHITSSVPVSLVASELNIPGLHSCFMT 132 (133)
Q Consensus 92 l~V~~a~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~ 132 (133)
+.|.||..+.. .......|+|+.|+..++..++++||..
T Consensus 109 vqvk~Ad~E~e--r~~~e~KLFvg~lsK~~te~evr~iFs~ 147 (510)
T KOG0144|consen 109 VQVKYADGERE--RIVEERKLFVGMLSKQCTENEVREIFSR 147 (510)
T ss_pred eeecccchhhh--ccccchhhhhhhccccccHHHHHHHHHh
Confidence 89999877652 2233456999999999999999999963
No 23
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.69 E-value=1.7e-16 Score=107.01 Aligned_cols=81 Identities=23% Similarity=0.347 Sum_probs=74.6
Q ss_pred CCCCCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEc--CCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCeeEE
Q 043011 16 EDERSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAA--DDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRFLH 93 (133)
Q Consensus 16 ~~~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~--~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~l~ 93 (133)
..+-++.|||+|||.+ +|.|+..++|++||.|..|++- ...+|-|||.|+++.+|.+|++.|+|.. ++++.|.
T Consensus 14 ppevnriLyirNLp~~--ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n---~~~ryl~ 88 (124)
T KOG0114|consen 14 PPEVNRILYIRNLPFK--ITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYN---VDNRYLV 88 (124)
T ss_pred ChhhheeEEEecCCcc--ccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccc---cCCceEE
Confidence 3456899999999999 9999999999999999999983 3468999999999999999999999999 9999999
Q ss_pred EEeeecCC
Q 043011 94 ISYSVLED 101 (133)
Q Consensus 94 V~~a~~~~ 101 (133)
|-|-.+.+
T Consensus 89 vlyyq~~~ 96 (124)
T KOG0114|consen 89 VLYYQPED 96 (124)
T ss_pred EEecCHHH
Confidence 99988765
No 24
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.69 E-value=2.4e-16 Score=118.32 Aligned_cols=111 Identities=18% Similarity=0.277 Sum_probs=93.0
Q ss_pred CCCCCeEEEeccCCCCCCCHHHHHH----HhhcCCCeeEEEEc--CCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCe
Q 043011 17 DERSPNLFVANCGPAVGVSYEAIGS----VFSAFGDVKGIYAA--DDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANR 90 (133)
Q Consensus 17 ~~~~~~L~V~Nl~~~~~vte~~L~~----~F~~fG~V~~v~~~--~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr 90 (133)
..|+.||||.||++. +..++|++ +|++||.|.+|... .+.||.|||.|.+.+.|..|+++|+|.. +.|+
T Consensus 6 ~~pn~TlYInnLnek--I~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfp---FygK 80 (221)
T KOG4206|consen 6 VNPNGTLYINNLNEK--IKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFP---FYGK 80 (221)
T ss_pred cCCCceEeehhcccc--ccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCc---ccCc
Confidence 345669999999999 99999987 99999999999884 5789999999999999999999999999 9999
Q ss_pred eEEEEeeecCC---CC-C-------------------------------------------CCCCcceeEeeecCCCCCc
Q 043011 91 FLHISYSVLED---SP-A-------------------------------------------TRHITSSVPVSLVASELNI 123 (133)
Q Consensus 91 ~l~V~~a~~~~---~~-~-------------------------------------------~~~~~~~l~v~nl~~~~~~ 123 (133)
.++|+||+.+. .+ + ....+..+.+.|||++.+.
T Consensus 81 ~mriqyA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~ 160 (221)
T KOG4206|consen 81 PMRIQYAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESES 160 (221)
T ss_pred hhheecccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhH
Confidence 99999998765 11 0 0223345778888888888
Q ss_pred hhhhhhhcc
Q 043011 124 PGLHSCFMT 132 (133)
Q Consensus 124 ~~l~~~f~~ 132 (133)
.-+..||..
T Consensus 161 e~l~~lf~q 169 (221)
T KOG4206|consen 161 EMLSDLFEQ 169 (221)
T ss_pred HHHHHHHhh
Confidence 888777753
No 25
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.68 E-value=1.7e-16 Score=120.49 Aligned_cols=78 Identities=19% Similarity=0.301 Sum_probs=72.8
Q ss_pred CCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEc-----CCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCeeEE
Q 043011 19 RSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAA-----DDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRFLH 93 (133)
Q Consensus 19 ~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~-----~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~l~ 93 (133)
.+.+|-|.||+.+ +++++|+++|.+||.|.++++. +.+||||||+|++.++|++||+.|||.- ++.-.|+
T Consensus 188 D~~tvRvtNLsed--~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~g---yd~LILr 262 (270)
T KOG0122|consen 188 DEATVRVTNLSED--MREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYG---YDNLILR 262 (270)
T ss_pred ccceeEEecCccc--cChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcc---cceEEEE
Confidence 4578999999999 9999999999999999999884 5689999999999999999999999999 9999999
Q ss_pred EEeeecCC
Q 043011 94 ISYSVLED 101 (133)
Q Consensus 94 V~~a~~~~ 101 (133)
|+||+|+.
T Consensus 263 vEwskP~~ 270 (270)
T KOG0122|consen 263 VEWSKPSN 270 (270)
T ss_pred EEecCCCC
Confidence 99999863
No 26
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.68 E-value=3.1e-16 Score=120.94 Aligned_cols=76 Identities=17% Similarity=0.186 Sum_probs=69.7
Q ss_pred CCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEcCC--CCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCeeEEEEee
Q 043011 20 SPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAADD--SGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRFLHISYS 97 (133)
Q Consensus 20 ~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~~~--~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~l~V~~a 97 (133)
.++|||+||++. +|+++|+++|+.||+|++|.+..+ .+|||||+|.+.++|+.|+. |||.. +.|+.|.|..+
T Consensus 4 ~rtVfVgNLs~~--tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~All-LnG~~---l~gr~V~Vt~a 77 (260)
T PLN03120 4 VRTVKVSNVSLK--ATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALL-LSGAT---IVDQSVTITPA 77 (260)
T ss_pred CCEEEEeCCCCC--CCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHH-hcCCe---eCCceEEEEec
Confidence 579999999999 999999999999999999998533 57999999999999999995 99999 99999999998
Q ss_pred ecCC
Q 043011 98 VLED 101 (133)
Q Consensus 98 ~~~~ 101 (133)
..-.
T Consensus 78 ~~~~ 81 (260)
T PLN03120 78 EDYQ 81 (260)
T ss_pred cCCC
Confidence 7543
No 27
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.68 E-value=3.5e-16 Score=125.70 Aligned_cols=93 Identities=16% Similarity=0.276 Sum_probs=76.2
Q ss_pred CCCCCCCCCCCCCCCCCCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEc-----CCCCCeEEEEECCHHHHHHHHH
Q 043011 3 APSNSRFRRPKAGEDERSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAA-----DDSGARVIVSYFDEGSAQAAFN 77 (133)
Q Consensus 3 ~~~~~~f~~p~~~~~~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~-----~~~kg~afV~f~~~~~A~~A~~ 77 (133)
++....|++|.. ......+|||+||+++ +|+++|+++|++||+|.++.+. +++||||||+|.+.++|++|++
T Consensus 177 r~i~V~~a~p~~-~~~~~~~lfV~nLp~~--vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~ 253 (346)
T TIGR01659 177 KRLKVSYARPGG-ESIKDTNLYVTNLPRT--ITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAIS 253 (346)
T ss_pred ceeeeecccccc-cccccceeEEeCCCCc--ccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHH
Confidence 344445555532 2334678999999999 9999999999999999998874 3467999999999999999999
Q ss_pred HhcCCCCCCCCC--eeEEEEeeecCC
Q 043011 78 SLHSRPCPDLAN--RFLHISYSVLED 101 (133)
Q Consensus 78 ~l~g~~~~~l~g--r~l~V~~a~~~~ 101 (133)
.||+.. +.+ ++|.|.++....
T Consensus 254 ~lng~~---~~g~~~~l~V~~a~~~~ 276 (346)
T TIGR01659 254 ALNNVI---PEGGSQPLTVRLAEEHG 276 (346)
T ss_pred HhCCCc---cCCCceeEEEEECCccc
Confidence 999998 765 789999987664
No 28
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.67 E-value=2.7e-16 Score=123.64 Aligned_cols=78 Identities=18% Similarity=0.187 Sum_probs=72.3
Q ss_pred CCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEc---CCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCeeEEEE
Q 043011 19 RSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAA---DDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRFLHIS 95 (133)
Q Consensus 19 ~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~---~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~l~V~ 95 (133)
--++|+|+|||.. ..|.||+.+|++||.|.+|.+. +-+|||+||+|++.+||++|..+|||.. +.||+|.|.
T Consensus 95 ~pkRLhVSNIPFr--FRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~---VEGRkIEVn 169 (376)
T KOG0125|consen 95 TPKRLHVSNIPFR--FRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTV---VEGRKIEVN 169 (376)
T ss_pred CCceeEeecCCcc--ccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcce---eeceEEEEe
Confidence 3589999999999 9999999999999999999874 4589999999999999999999999999 999999999
Q ss_pred eeecCC
Q 043011 96 YSVLED 101 (133)
Q Consensus 96 ~a~~~~ 101 (133)
-+..+-
T Consensus 170 ~ATarV 175 (376)
T KOG0125|consen 170 NATARV 175 (376)
T ss_pred ccchhh
Confidence 997664
No 29
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.67 E-value=6e-16 Score=131.50 Aligned_cols=78 Identities=24% Similarity=0.339 Sum_probs=72.4
Q ss_pred CCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEc-----CCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCeeEE
Q 043011 19 RSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAA-----DDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRFLH 93 (133)
Q Consensus 19 ~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~-----~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~l~ 93 (133)
...+|||+||+++ +++++|+++|++||+|.++++. +++||||||+|.+.++|.+|++.|||.. ++|+.|+
T Consensus 203 ~~~rLfVgnLp~~--vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~e---lgGr~Lr 277 (612)
T TIGR01645 203 KFNRIYVASVHPD--LSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFD---LGGQYLR 277 (612)
T ss_pred ccceEEeecCCCC--CCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCe---eCCeEEE
Confidence 4579999999999 9999999999999999999874 3579999999999999999999999999 9999999
Q ss_pred EEeeecCC
Q 043011 94 ISYSVLED 101 (133)
Q Consensus 94 V~~a~~~~ 101 (133)
|.++.+++
T Consensus 278 V~kAi~pP 285 (612)
T TIGR01645 278 VGKCVTPP 285 (612)
T ss_pred EEecCCCc
Confidence 99998754
No 30
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.65 E-value=8.8e-16 Score=92.44 Aligned_cols=56 Identities=30% Similarity=0.444 Sum_probs=51.5
Q ss_pred HHHHhhcCCCeeEEEEcCCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCeeEEEEee
Q 043011 39 IGSVFSAFGDVKGIYAADDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRFLHISYS 97 (133)
Q Consensus 39 L~~~F~~fG~V~~v~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~l~V~~a 97 (133)
|+++|++||+|.++.+..+.+++|||+|.+.++|++|++.|||.. +.|++|+|+||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~~~~a~V~f~~~~~A~~a~~~l~~~~---~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKKRGFAFVEFASVEDAQKAIEQLNGRQ---FNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTSTTEEEEEESSHHHHHHHHHHHTTSE---ETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCE---ECCcEEEEEEC
Confidence 689999999999999965556999999999999999999999999 99999999997
No 31
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.63 E-value=3e-15 Score=124.30 Aligned_cols=78 Identities=17% Similarity=0.310 Sum_probs=71.5
Q ss_pred CCCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEc-----CCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCeeE
Q 043011 18 ERSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAA-----DDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRFL 92 (133)
Q Consensus 18 ~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~-----~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~l 92 (133)
.+..+|||+||+.. +|+++|+++|++||.|..+.+. +.++|||||+|.+.++|..|+..|||.. +.|+.|
T Consensus 293 ~~~~~l~v~nlp~~--~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~---~~~~~l 367 (509)
T TIGR01642 293 DSKDRIYIGNLPLY--LGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKD---TGDNKL 367 (509)
T ss_pred CCCCEEEEeCCCCC--CCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCE---ECCeEE
Confidence 45689999999999 9999999999999999998863 4579999999999999999999999999 999999
Q ss_pred EEEeeecC
Q 043011 93 HISYSVLE 100 (133)
Q Consensus 93 ~V~~a~~~ 100 (133)
.|.++...
T Consensus 368 ~v~~a~~~ 375 (509)
T TIGR01642 368 HVQRACVG 375 (509)
T ss_pred EEEECccC
Confidence 99998654
No 32
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.63 E-value=6.9e-16 Score=115.13 Aligned_cols=78 Identities=22% Similarity=0.320 Sum_probs=72.0
Q ss_pred CCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEc-----CCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCeeEE
Q 043011 19 RSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAA-----DDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRFLH 93 (133)
Q Consensus 19 ~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~-----~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~l~ 93 (133)
-...|-|-||..- ++.++|+.+|++||.|-+|+|+ ..++|||||.|.+..+|+.|+++|+|.+ |+|+.|+
T Consensus 12 gm~SLkVdNLTyR--Tspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~---ldgRelr 86 (256)
T KOG4207|consen 12 GMTSLKVDNLTYR--TSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAV---LDGRELR 86 (256)
T ss_pred cceeEEecceecc--CCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhccee---eccceee
Confidence 3578999999999 9999999999999999999985 4589999999999999999999999999 9999999
Q ss_pred EEeeecCC
Q 043011 94 ISYSVLED 101 (133)
Q Consensus 94 V~~a~~~~ 101 (133)
|++|+-..
T Consensus 87 Vq~arygr 94 (256)
T KOG4207|consen 87 VQMARYGR 94 (256)
T ss_pred ehhhhcCC
Confidence 99987544
No 33
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.62 E-value=1.6e-15 Score=94.59 Aligned_cols=66 Identities=24% Similarity=0.430 Sum_probs=59.2
Q ss_pred EEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEcCC----CCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCeeEE
Q 043011 23 LFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAADD----SGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRFLH 93 (133)
Q Consensus 23 L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~~~----~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~l~ 93 (133)
|||+|||++ +++++|+++|+.||.|..+.+... .+|+|||+|.+.++|.+|++.++|.. ++|+.|+
T Consensus 1 v~i~nlp~~--~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~---~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPS--TTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKE---IDGRKLR 70 (70)
T ss_dssp EEEESSTTT----HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEE---ETTEEEE
T ss_pred CEEeCCCCC--CCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcE---ECCEEcC
Confidence 799999999 999999999999999999998543 47999999999999999999999999 9999874
No 34
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=4.8e-16 Score=117.09 Aligned_cols=78 Identities=21% Similarity=0.348 Sum_probs=74.0
Q ss_pred CCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEc-----CCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCeeEE
Q 043011 19 RSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAA-----DDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRFLH 93 (133)
Q Consensus 19 ~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~-----~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~l~ 93 (133)
..++||||.|... ++|.-|...|-+||+|.+|.++ .++|||+||+|...++|..|+++||+.+ |.||.|+
T Consensus 9 ~KrtlYVGGlade--VtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesE---L~Grtir 83 (298)
T KOG0111|consen 9 QKRTLYVGGLADE--VTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESE---LFGRTIR 83 (298)
T ss_pred cceeEEeccchHH--HHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhh---hcceeEE
Confidence 4689999999999 9999999999999999999885 5789999999999999999999999999 9999999
Q ss_pred EEeeecCC
Q 043011 94 ISYSVLED 101 (133)
Q Consensus 94 V~~a~~~~ 101 (133)
|.||+|..
T Consensus 84 VN~AkP~k 91 (298)
T KOG0111|consen 84 VNLAKPEK 91 (298)
T ss_pred EeecCCcc
Confidence 99999876
No 35
>smart00362 RRM_2 RNA recognition motif.
Probab=99.61 E-value=4.5e-15 Score=90.42 Aligned_cols=69 Identities=30% Similarity=0.486 Sum_probs=63.0
Q ss_pred eEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEcCC---CCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCeeEEEE
Q 043011 22 NLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAADD---SGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRFLHIS 95 (133)
Q Consensus 22 ~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~~~---~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~l~V~ 95 (133)
+|||+||+.. +++++|+++|++||+|..+.+... ++|+|||+|.+.++|+.|+..++|.. +.|+.+.|+
T Consensus 1 ~v~i~~l~~~--~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~---~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPD--VTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTK---LGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCc--CCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcE---ECCEEEeeC
Confidence 5899999999 999999999999999999987533 47999999999999999999999999 999998873
No 36
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.61 E-value=7.6e-15 Score=119.25 Aligned_cols=100 Identities=15% Similarity=0.220 Sum_probs=89.6
Q ss_pred CCCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEc-----CCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCC-Cee
Q 043011 18 ERSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAA-----DDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLA-NRF 91 (133)
Q Consensus 18 ~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~-----~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~-gr~ 91 (133)
...+-||||.||.+ +.|+||..+|++-|+|-+++++ +++||||||+|.+.++|+.|++.||+.+ +. |+.
T Consensus 81 ~~G~EVfvGkIPrD--~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~E---ir~GK~ 155 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRD--VFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYE---IRPGKL 155 (506)
T ss_pred CCCceEEecCCCcc--ccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCcc---ccCCCE
Confidence 44689999999999 9999999999999999999974 5689999999999999999999999998 75 999
Q ss_pred EEEEeeecCCCCCCCCCcceeEeeecCCCCCchhhhhhhc
Q 043011 92 LHISYSVLEDSPATRHITSSVPVSLVASELNIPGLHSCFM 131 (133)
Q Consensus 92 l~V~~a~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~ 131 (133)
|.|..|..+. .|+|||||.+.+-.++++-|.
T Consensus 156 igvc~Svan~---------RLFiG~IPK~k~keeIlee~~ 186 (506)
T KOG0117|consen 156 LGVCVSVANC---------RLFIGNIPKTKKKEEILEEMK 186 (506)
T ss_pred eEEEEeeecc---------eeEeccCCccccHHHHHHHHH
Confidence 9999886653 499999999999888877554
No 37
>PLN03213 repressor of silencing 3; Provisional
Probab=99.60 E-value=3.4e-15 Score=122.98 Aligned_cols=80 Identities=14% Similarity=0.187 Sum_probs=72.4
Q ss_pred CCCCCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEcC-CCCCeEEEEECCH--HHHHHHHHHhcCCCCCCCCCeeE
Q 043011 16 EDERSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAAD-DSGARVIVSYFDE--GSAQAAFNSLHSRPCPDLANRFL 92 (133)
Q Consensus 16 ~~~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~~-~~kg~afV~f~~~--~~A~~A~~~l~g~~~~~l~gr~l 92 (133)
......+||||||+++ ++++||+.+|++||.|.+|.+++ ..||||||+|.+. .++.+|+..|||.. ++||.|
T Consensus 6 s~~~gMRIYVGNLSyd--VTEDDLravFSeFGsVkdVEIpRETGRGFAFVEMssdddaEeeKAISaLNGAE---WKGR~L 80 (759)
T PLN03213 6 SGGGGVRLHVGGLGES--VGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYNGCV---WKGGRL 80 (759)
T ss_pred cCCcceEEEEeCCCCC--CCHHHHHHHHHhcCCeeEEEEecccCCceEEEEecCCcHHHHHHHHHHhcCCe---ecCcee
Confidence 3445789999999999 99999999999999999999853 3599999999987 78999999999999 999999
Q ss_pred EEEeeecC
Q 043011 93 HISYSVLE 100 (133)
Q Consensus 93 ~V~~a~~~ 100 (133)
+|+-|++.
T Consensus 81 KVNKAKP~ 88 (759)
T PLN03213 81 RLEKAKEH 88 (759)
T ss_pred EEeeccHH
Confidence 99999875
No 38
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.60 E-value=4.1e-15 Score=122.10 Aligned_cols=76 Identities=20% Similarity=0.349 Sum_probs=70.5
Q ss_pred CCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEc-----CCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCeeEE
Q 043011 19 RSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAA-----DDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRFLH 93 (133)
Q Consensus 19 ~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~-----~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~l~ 93 (133)
.+++|||+||+.. +|+++|+++|++||.|.+|.+. ++++|||||+|.+.++|.+|+..|||.. +.|+.|.
T Consensus 185 ~~~~l~v~nl~~~--~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~---i~g~~i~ 259 (457)
T TIGR01622 185 NFLKLYVGNLHFN--ITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFE---LAGRPIK 259 (457)
T ss_pred CCCEEEEcCCCCC--CCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcE---ECCEEEE
Confidence 4789999999999 9999999999999999999874 3578999999999999999999999999 9999999
Q ss_pred EEeeec
Q 043011 94 ISYSVL 99 (133)
Q Consensus 94 V~~a~~ 99 (133)
|.|+..
T Consensus 260 v~~a~~ 265 (457)
T TIGR01622 260 VGYAQD 265 (457)
T ss_pred EEEccC
Confidence 999763
No 39
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.59 E-value=5.7e-15 Score=113.85 Aligned_cols=80 Identities=14% Similarity=0.297 Sum_probs=74.3
Q ss_pred CCCCCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEcCCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCeeEEEE
Q 043011 16 EDERSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAADDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRFLHIS 95 (133)
Q Consensus 16 ~~~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~l~V~ 95 (133)
..+.++++||||++.. ++|++|++.|++||+|.+|++ -+.+|||||.|++.|+|.+||..+||++ +.|..++..
T Consensus 160 ssp~NtsVY~G~I~~~--lte~~mr~~Fs~fG~I~EVRv-Fk~qGYaFVrF~tkEaAahAIv~mNnte---i~G~~VkCs 233 (321)
T KOG0148|consen 160 SSPDNTSVYVGNIASG--LTEDLMRQTFSPFGPIQEVRV-FKDQGYAFVRFETKEAAAHAIVQMNNTE---IGGQLVRCS 233 (321)
T ss_pred CCCCCceEEeCCcCcc--ccHHHHHHhcccCCcceEEEE-ecccceEEEEecchhhHHHHHHHhcCce---eCceEEEEe
Confidence 3456799999999998 999999999999999999999 5679999999999999999999999999 999999999
Q ss_pred eeecCC
Q 043011 96 YSVLED 101 (133)
Q Consensus 96 ~a~~~~ 101 (133)
|-+...
T Consensus 234 WGKe~~ 239 (321)
T KOG0148|consen 234 WGKEGD 239 (321)
T ss_pred ccccCC
Confidence 987765
No 40
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.59 E-value=1.8e-14 Score=107.00 Aligned_cols=107 Identities=22% Similarity=0.260 Sum_probs=86.7
Q ss_pred CCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEc-----CCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCeeEEE
Q 043011 20 SPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAA-----DDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRFLHI 94 (133)
Q Consensus 20 ~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~-----~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~l~V 94 (133)
..+|||+||+.+ +++++|+++|.+||.|.++.+. +..+|||||.|.+.++|..|+..++|.. +.|+.|+|
T Consensus 115 ~~~l~v~nL~~~--~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~---~~~~~~~v 189 (306)
T COG0724 115 NNTLFVGNLPYD--VTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKE---LEGRPLRV 189 (306)
T ss_pred CceEEEeCCCCC--CCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCe---ECCceeEe
Confidence 599999999999 9999999999999999888763 4679999999999999999999999999 99999999
Q ss_pred Eeeec----CCCCC-----------------CCCCcceeEeeecCCCCCchhhhhhhc
Q 043011 95 SYSVL----EDSPA-----------------TRHITSSVPVSLVASELNIPGLHSCFM 131 (133)
Q Consensus 95 ~~a~~----~~~~~-----------------~~~~~~~l~v~nl~~~~~~~~l~~~f~ 131 (133)
+++.+ +.... .......+.+.+++...+...+...|.
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (306)
T COG0724 190 QKAQPASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFK 247 (306)
T ss_pred eccccccccccccccccchhhhccccccccccccccceeeccccccccchhHHHHhcc
Confidence 99652 21111 112234467777777777777776663
No 41
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.56 E-value=1.6e-14 Score=112.42 Aligned_cols=81 Identities=19% Similarity=0.233 Sum_probs=75.5
Q ss_pred CCCCCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEE-----cCCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCe
Q 043011 16 EDERSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYA-----ADDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANR 90 (133)
Q Consensus 16 ~~~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~-----~~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr 90 (133)
...|-+||||+-|+.+ ++|.+|++.|++||+|+.|++ +++++|||||+|++..+...|++..+|.. |+|+
T Consensus 97 ~gDPy~TLFv~RLnyd--T~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~---Idgr 171 (335)
T KOG0113|consen 97 IGDPYKTLFVARLNYD--TSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIK---IDGR 171 (335)
T ss_pred cCCccceeeeeecccc--ccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCce---ecCc
Confidence 4578999999999999 999999999999999999986 47899999999999999999999999999 9999
Q ss_pred eEEEEeeecCC
Q 043011 91 FLHISYSVLED 101 (133)
Q Consensus 91 ~l~V~~a~~~~ 101 (133)
.|.|++..-..
T Consensus 172 ri~VDvERgRT 182 (335)
T KOG0113|consen 172 RILVDVERGRT 182 (335)
T ss_pred EEEEEeccccc
Confidence 99999987654
No 42
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.56 E-value=4.2e-14 Score=86.52 Aligned_cols=70 Identities=33% Similarity=0.546 Sum_probs=64.4
Q ss_pred eEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEcCC----CCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCeeEEEEe
Q 043011 22 NLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAADD----SGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRFLHISY 96 (133)
Q Consensus 22 ~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~~~----~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~l~V~~ 96 (133)
+|+|+||++. +++++|+++|+.||+|..+.+... .+|+|||+|.+.++|..|++.+++.. +.|+.+.|+|
T Consensus 1 ~i~i~~l~~~--~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~---~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPD--VTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKE---LGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCc--cCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCe---ECCeEEEEeC
Confidence 4899999999 999999999999999999988543 37999999999999999999999999 9999999875
No 43
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.55 E-value=3.3e-14 Score=108.47 Aligned_cols=74 Identities=15% Similarity=0.165 Sum_probs=66.8
Q ss_pred CCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEcC--CCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCeeEEEEe
Q 043011 19 RSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAAD--DSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRFLHISY 96 (133)
Q Consensus 19 ~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~~--~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~l~V~~ 96 (133)
...+|||+||++. +|+++|+++|+.||+|.+|++.. ..+++|||+|.+.++|+.|+ .|+|.. |.+++|.|..
T Consensus 4 ~g~TV~V~NLS~~--tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAl-lLnGa~---l~d~~I~It~ 77 (243)
T PLN03121 4 GGYTAEVTNLSPK--ATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAV-LLSGAT---IVDQRVCITR 77 (243)
T ss_pred CceEEEEecCCCC--CCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHH-hcCCCe---eCCceEEEEe
Confidence 3579999999999 99999999999999999999853 35689999999999999999 699999 9999999876
Q ss_pred ee
Q 043011 97 SV 98 (133)
Q Consensus 97 a~ 98 (133)
..
T Consensus 78 ~~ 79 (243)
T PLN03121 78 WG 79 (243)
T ss_pred Cc
Confidence 44
No 44
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.54 E-value=7.5e-15 Score=118.97 Aligned_cols=83 Identities=18% Similarity=0.272 Sum_probs=73.3
Q ss_pred CCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEc----CCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCeeEEE
Q 043011 19 RSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAA----DDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRFLHI 94 (133)
Q Consensus 19 ~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~----~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~l~V 94 (133)
..++||||-|+.. +||+|++++|++||-|+++.+. +.+||||||.|.+.+.|..||++|||...-+=+..+|.|
T Consensus 123 ~e~KLFvg~lsK~--~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVV 200 (510)
T KOG0144|consen 123 EERKLFVGMLSKQ--CTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVV 200 (510)
T ss_pred cchhhhhhhcccc--ccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEE
Confidence 3789999999999 9999999999999999999985 358999999999999999999999998732334569999
Q ss_pred EeeecCCCC
Q 043011 95 SYSVLEDSP 103 (133)
Q Consensus 95 ~~a~~~~~~ 103 (133)
.||.+++++
T Consensus 201 kFADtqkdk 209 (510)
T KOG0144|consen 201 KFADTQKDK 209 (510)
T ss_pred EecccCCCc
Confidence 999988743
No 45
>smart00360 RRM RNA recognition motif.
Probab=99.52 E-value=5.7e-14 Score=85.08 Aligned_cols=66 Identities=27% Similarity=0.447 Sum_probs=59.6
Q ss_pred EeccCCCCCCCHHHHHHHhhcCCCeeEEEEcC-----CCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCeeEEEE
Q 043011 25 VANCGPAVGVSYEAIGSVFSAFGDVKGIYAAD-----DSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRFLHIS 95 (133)
Q Consensus 25 V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~~-----~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~l~V~ 95 (133)
|+||+.. +++++|+++|++||.|..+.+.. .++|+|||+|.+.++|..|++.++|.. +.|+.++|+
T Consensus 1 i~~l~~~--~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~---~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPD--VTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKE---LDGRPLKVK 71 (71)
T ss_pred CCCCCcc--cCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCe---eCCcEEEeC
Confidence 5799999 99999999999999999998743 347999999999999999999999999 999998873
No 46
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.52 E-value=3.6e-14 Score=120.23 Aligned_cols=103 Identities=24% Similarity=0.253 Sum_probs=89.6
Q ss_pred EEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEcCC--------CCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCeeEEE
Q 043011 23 LFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAADD--------SGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRFLHI 94 (133)
Q Consensus 23 L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~~~--------~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~l~V 94 (133)
|||.||+.+ ++.++|...|.++|.|.++.+..+ +.||+||+|.+.++|+.|++.|+|+. |+|+.|.|
T Consensus 518 lfvkNlnf~--Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtv---ldGH~l~l 592 (725)
T KOG0110|consen 518 LFVKNLNFD--TTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTV---LDGHKLEL 592 (725)
T ss_pred hhhhcCCcc--cchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCce---ecCceEEE
Confidence 999999999 999999999999999999987421 34999999999999999999999999 99999999
Q ss_pred EeeecC--------CCCCCCCCcceeEeeecCCCCCchhhhhhhcc
Q 043011 95 SYSVLE--------DSPATRHITSSVPVSLVASELNIPGLHSCFMT 132 (133)
Q Consensus 95 ~~a~~~--------~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~ 132 (133)
++|..+ .++++.. ..|+|-|||...+..+++.||.+
T Consensus 593 k~S~~k~~~~~gK~~~~kk~~--tKIlVRNipFeAt~rEVr~LF~a 636 (725)
T KOG0110|consen 593 KISENKPASTVGKKKSKKKKG--TKILVRNIPFEATKREVRKLFTA 636 (725)
T ss_pred EeccCcccccccccccccccc--ceeeeeccchHHHHHHHHHHHhc
Confidence 999822 2222232 24999999999999999999975
No 47
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.51 E-value=2.2e-14 Score=114.67 Aligned_cols=106 Identities=19% Similarity=0.269 Sum_probs=91.4
Q ss_pred CCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEE-----cCCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCeeEEE
Q 043011 20 SPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYA-----ADDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRFLHI 94 (133)
Q Consensus 20 ~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~-----~~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~l~V 94 (133)
-+++|||.+... +.|+.||..|.+||+|++|.+ +.++||||||+|+-.+.|+.|++.|||.. ++||.|+|
T Consensus 113 McRvYVGSIsfE--l~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~m---lGGRNiKV 187 (544)
T KOG0124|consen 113 MCRVYVGSISFE--LREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQM---LGGRNIKV 187 (544)
T ss_pred hHheeeeeeEEE--echHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhcccc---ccCccccc
Confidence 368999999999 999999999999999999987 36899999999999999999999999999 99999999
Q ss_pred EeeecCC-CCC---------CCCCcceeEeeecCCCCCchhhhhhhcc
Q 043011 95 SYSVLED-SPA---------TRHITSSVPVSLVASELNIPGLHSCFMT 132 (133)
Q Consensus 95 ~~a~~~~-~~~---------~~~~~~~l~v~nl~~~~~~~~l~~~f~~ 132 (133)
. +|.+ ++. +...-..+||+-+.++++..++.+.|..
T Consensus 188 g--rPsNmpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEA 233 (544)
T KOG0124|consen 188 G--RPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEA 233 (544)
T ss_pred c--CCCCCcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHh
Confidence 7 4444 221 1222234999999999999999999964
No 48
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.51 E-value=5.3e-14 Score=114.40 Aligned_cols=75 Identities=17% Similarity=0.294 Sum_probs=70.7
Q ss_pred CCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEcCCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCeeEEEEeee
Q 043011 19 RSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAADDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRFLHISYSV 98 (133)
Q Consensus 19 ~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~l~V~~a~ 98 (133)
.-+.|||+||..+ +|+|.|+++|++||.|++|+.. |-||||+|.+.++|.+|++.+||++ |.|..|.|.+|+
T Consensus 258 ~VKvLYVRNL~~~--tTeE~lk~~F~~~G~veRVkk~---rDYaFVHf~eR~davkAm~~~ngke---ldG~~iEvtLAK 329 (506)
T KOG0117|consen 258 KVKVLYVRNLMES--TTEETLKKLFNEFGKVERVKKP---RDYAFVHFAEREDAVKAMKETNGKE---LDGSPIEVTLAK 329 (506)
T ss_pred heeeeeeeccchh--hhHHHHHHHHHhccceEEeecc---cceeEEeecchHHHHHHHHHhcCce---ecCceEEEEecC
Confidence 4579999999999 9999999999999999999874 5699999999999999999999999 999999999999
Q ss_pred cCC
Q 043011 99 LED 101 (133)
Q Consensus 99 ~~~ 101 (133)
|..
T Consensus 330 P~~ 332 (506)
T KOG0117|consen 330 PVD 332 (506)
T ss_pred Chh
Confidence 987
No 49
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.51 E-value=5.3e-14 Score=99.03 Aligned_cols=78 Identities=21% Similarity=0.307 Sum_probs=72.2
Q ss_pred CCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEc-----CCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCeeEEE
Q 043011 20 SPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAA-----DDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRFLHI 94 (133)
Q Consensus 20 ~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~-----~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~l~V 94 (133)
.-.|||.++.+. .+++++.+.|..||+|+.|++. +-.||||.|+|++.++|++|+++|||.. |.|..+.|
T Consensus 72 GwIi~VtgvHeE--atEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~---ll~q~v~V 146 (170)
T KOG0130|consen 72 GWIIFVTGVHEE--ATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAE---LLGQNVSV 146 (170)
T ss_pred eEEEEEeccCcc--hhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchh---hhCCceeE
Confidence 468999999999 9999999999999999999874 2358999999999999999999999999 99999999
Q ss_pred EeeecCCC
Q 043011 95 SYSVLEDS 102 (133)
Q Consensus 95 ~~a~~~~~ 102 (133)
+|+..+.|
T Consensus 147 Dw~Fv~gp 154 (170)
T KOG0130|consen 147 DWCFVKGP 154 (170)
T ss_pred EEEEecCC
Confidence 99998874
No 50
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.48 E-value=5.9e-14 Score=106.20 Aligned_cols=77 Identities=18% Similarity=0.232 Sum_probs=65.7
Q ss_pred CCCCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEE-----cCCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCee
Q 043011 17 DERSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYA-----ADDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRF 91 (133)
Q Consensus 17 ~~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~-----~~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~ 91 (133)
+..-.+||||+|++. +..|+|++.|++||+|.+..+ .+++|||+||+|.|.++|.+|++.-|- .|+||+
T Consensus 9 DT~~TKifVggL~w~--T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~p----iIdGR~ 82 (247)
T KOG0149|consen 9 DTTFTKIFVGGLAWE--THKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPNP----IIDGRK 82 (247)
T ss_pred CceEEEEEEcCcccc--cchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCCC----cccccc
Confidence 344579999999999 999999999999999988765 367999999999999999999986553 279998
Q ss_pred EEEEeeec
Q 043011 92 LHISYSVL 99 (133)
Q Consensus 92 l~V~~a~~ 99 (133)
-.+..|.-
T Consensus 83 aNcnlA~l 90 (247)
T KOG0149|consen 83 ANCNLASL 90 (247)
T ss_pred cccchhhh
Confidence 88877654
No 51
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.47 E-value=4.8e-15 Score=108.70 Aligned_cols=75 Identities=19% Similarity=0.279 Sum_probs=69.8
Q ss_pred CCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEE-----cCCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCeeEE
Q 043011 19 RSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYA-----ADDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRFLH 93 (133)
Q Consensus 19 ~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~-----~~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~l~ 93 (133)
.+..||||||+.+ .||.||-.+|++||+|.+|.+ +++++||||.-|+|.++-..|+++|||.. +.||.|+
T Consensus 34 dsA~Iyiggl~~~--LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGik---i~gRtir 108 (219)
T KOG0126|consen 34 DSAYIYIGGLPYE--LTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIK---ILGRTIR 108 (219)
T ss_pred cceEEEECCCccc--ccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCce---ecceeEE
Confidence 4789999999999 999999999999999999987 36799999999999999999999999999 9999999
Q ss_pred EEeee
Q 043011 94 ISYSV 98 (133)
Q Consensus 94 V~~a~ 98 (133)
|+--.
T Consensus 109 VDHv~ 113 (219)
T KOG0126|consen 109 VDHVS 113 (219)
T ss_pred eeecc
Confidence 97543
No 52
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.47 E-value=2.5e-13 Score=110.03 Aligned_cols=96 Identities=21% Similarity=0.265 Sum_probs=86.6
Q ss_pred CeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEcC--CCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCeeEEEEeee
Q 043011 21 PNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAAD--DSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRFLHISYSV 98 (133)
Q Consensus 21 ~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~~--~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~l~V~~a~ 98 (133)
..|||| ++ +|+.+|.++|+++|+|.+|+++. .+-|||||.|.+.++|++|++.||... +.|++++|-|+.
T Consensus 2 ~sl~vg---~~--v~e~~l~~~f~~~~~v~s~rvc~d~tslgy~yvnf~~~~da~~A~~~~n~~~---~~~~~~rim~s~ 73 (369)
T KOG0123|consen 2 ASLYVG---PD--VTEAMLFDKFSPAGPVLSIRVCRDATSLGYAYVNFQQPADAERALDTMNFDV---LKGKPIRIMWSQ 73 (369)
T ss_pred CceecC---Cc--CChHHHHHHhcccCCceeEEEeecCCccceEEEecCCHHHHHHHHHHcCCcc---cCCcEEEeehhc
Confidence 368998 88 99999999999999999998743 277999999999999999999999999 999999999997
Q ss_pred cCCCCCCCCCcceeEeeecCCCCCchhhhhhhcc
Q 043011 99 LEDSPATRHITSSVPVSLVASELNIPGLHSCFMT 132 (133)
Q Consensus 99 ~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~ 132 (133)
..+.. ++|.|++++++...|..+|..
T Consensus 74 rd~~~--------~~i~nl~~~~~~~~~~d~f~~ 99 (369)
T KOG0123|consen 74 RDPSL--------VFIKNLDESIDNKSLYDTFSE 99 (369)
T ss_pred cCCce--------eeecCCCcccCcHHHHHHHHh
Confidence 76522 999999999999999999853
No 53
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.46 E-value=2.5e-13 Score=112.81 Aligned_cols=79 Identities=19% Similarity=0.241 Sum_probs=73.6
Q ss_pred CCCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEcC----CCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCeeEE
Q 043011 18 ERSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAAD----DSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRFLH 93 (133)
Q Consensus 18 ~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~~----~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~l~ 93 (133)
-+...|.|+|||+. +.+++|+.+|++||.|.+|.++. +-+|||||+|.+..+|.+|++.+||.. +.||++-
T Consensus 115 ~~k~rLIIRNLPf~--~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~---i~gR~VA 189 (678)
T KOG0127|consen 115 LPKWRLIIRNLPFK--CKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNK---IDGRPVA 189 (678)
T ss_pred CccceEEeecCCcc--cCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCce---ecCceeE
Confidence 34779999999999 99999999999999999999963 457999999999999999999999999 9999999
Q ss_pred EEeeecCC
Q 043011 94 ISYSVLED 101 (133)
Q Consensus 94 V~~a~~~~ 101 (133)
|+||.+++
T Consensus 190 VDWAV~Kd 197 (678)
T KOG0127|consen 190 VDWAVDKD 197 (678)
T ss_pred Eeeecccc
Confidence 99999886
No 54
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.43 E-value=4.4e-13 Score=114.78 Aligned_cols=99 Identities=15% Similarity=0.246 Sum_probs=83.7
Q ss_pred CCCCCCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEcCCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCeeEEE
Q 043011 15 GEDERSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAADDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRFLHI 94 (133)
Q Consensus 15 ~~~~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~l~V 94 (133)
.....++|||||.|+.+ +++.||+.+|+.||+|++|.+ ..++|+|||.+...++|.+|+.+|+... +.++.|+|
T Consensus 416 ~isV~SrTLwvG~i~k~--v~e~dL~~~feefGeiqSi~l-i~~R~cAfI~M~~RqdA~kalqkl~n~k---v~~k~Iki 489 (894)
T KOG0132|consen 416 HISVCSRTLWVGGIPKN--VTEQDLANLFEEFGEIQSIIL-IPPRGCAFIKMVRRQDAEKALQKLSNVK---VADKTIKI 489 (894)
T ss_pred ceeEeeeeeeeccccch--hhHHHHHHHHHhcccceeEee-ccCCceeEEEEeehhHHHHHHHHHhccc---ccceeeEE
Confidence 34456899999999999 999999999999999999998 5689999999999999999999999999 99999999
Q ss_pred EeeecCCCCC--CCCCcceeEeeecCC
Q 043011 95 SYSVLEDSPA--TRHITSSVPVSLVAS 119 (133)
Q Consensus 95 ~~a~~~~~~~--~~~~~~~l~v~nl~~ 119 (133)
.|+..+.++. ++...-.+-|.-|+.
T Consensus 490 ~Wa~g~G~kse~k~~wD~~lGVt~IP~ 516 (894)
T KOG0132|consen 490 AWAVGKGPKSEYKDYWDVELGVTYIPW 516 (894)
T ss_pred eeeccCCcchhhhhhhhcccCeeEeeh
Confidence 9999887544 444443344444443
No 55
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.42 E-value=7.6e-13 Score=107.26 Aligned_cols=104 Identities=18% Similarity=0.242 Sum_probs=88.3
Q ss_pred EEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEcC---CCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCeeEEEEeeec
Q 043011 23 LFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAAD---DSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRFLHISYSVL 99 (133)
Q Consensus 23 L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~~---~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~l~V~~a~~ 99 (133)
+||.||+++ ++..+|+++|+.||+|.++++.. -++|| ||+|++.++|.+|++.+||.. +.|++|.|.....
T Consensus 79 ~~i~nl~~~--~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~ng~l---l~~kki~vg~~~~ 152 (369)
T KOG0123|consen 79 VFIKNLDES--IDNKSLYDTFSEFGNILSCKVATDENGSKGY-FVQFESEESAKKAIEKLNGML---LNGKKIYVGLFER 152 (369)
T ss_pred eeecCCCcc--cCcHHHHHHHHhhcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHHhcCcc---cCCCeeEEeeccc
Confidence 999999999 99999999999999999999852 27899 999999999999999999999 9999999988776
Q ss_pred CCCCC---CC--CCcceeEeeecCCCCCchhhhhhhcc
Q 043011 100 EDSPA---TR--HITSSVPVSLVASELNIPGLHSCFMT 132 (133)
Q Consensus 100 ~~~~~---~~--~~~~~l~v~nl~~~~~~~~l~~~f~~ 132 (133)
+..+. +. ..-.++++.|.+...+..+|..+|..
T Consensus 153 ~~er~~~~~~~~~~~t~v~vk~~~~~~~~~~l~~~f~~ 190 (369)
T KOG0123|consen 153 KEEREAPLGEYKKRFTNVYVKNLEEDSTDEELKDLFSA 190 (369)
T ss_pred hhhhcccccchhhhhhhhheeccccccchHHHHHhhcc
Confidence 65211 11 11234899999999999999988853
No 56
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.41 E-value=9.9e-13 Score=109.34 Aligned_cols=107 Identities=16% Similarity=0.182 Sum_probs=92.4
Q ss_pred CeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEc-----CCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCeeEEEE
Q 043011 21 PNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAA-----DDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRFLHIS 95 (133)
Q Consensus 21 ~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~-----~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~l~V~ 95 (133)
.||||++||++ ++.++|.++|+.+|+|..+++. ...|||+||+|.-.+|++.|+..+++.. +.||.|.|+
T Consensus 6 ~TlfV~~lp~~--~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~k---f~Gr~l~v~ 80 (678)
T KOG0127|consen 6 ATLFVSRLPFS--STGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSK---FEGRILNVD 80 (678)
T ss_pred ceEEEecCCCc--cchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCc---ccceecccc
Confidence 89999999999 9999999999999999988773 2479999999999999999999999999 999999999
Q ss_pred eeecCCCC-----------CCCCC------------cceeEeeecCCCCCchhhhhhhcc
Q 043011 96 YSVLEDSP-----------ATRHI------------TSSVPVSLVASELNIPGLHSCFMT 132 (133)
Q Consensus 96 ~a~~~~~~-----------~~~~~------------~~~l~v~nl~~~~~~~~l~~~f~~ 132 (133)
++.++... ++.+. .-.|.|-|||..+..++|..+|..
T Consensus 81 ~A~~R~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~ 140 (678)
T KOG0127|consen 81 PAKKRARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSN 140 (678)
T ss_pred cccccccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhh
Confidence 99876411 11111 234889999999999999999964
No 57
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.41 E-value=8e-13 Score=108.77 Aligned_cols=76 Identities=24% Similarity=0.301 Sum_probs=71.9
Q ss_pred CeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEc-----CCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCeeEEEE
Q 043011 21 PNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAA-----DDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRFLHIS 95 (133)
Q Consensus 21 ~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~-----~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~l~V~ 95 (133)
+.+||||++.+ +++++|..+|+..|.|.++++. ++.+||+|++|.+.++|+.|++.|||.+ +.||+|+|.
T Consensus 19 ~~v~vgnip~~--~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~---~~gr~l~v~ 93 (435)
T KOG0108|consen 19 SSVFVGNIPYE--GSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAE---FNGRKLRVN 93 (435)
T ss_pred cceEecCCCCc--ccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcc---cCCceEEee
Confidence 89999999999 9999999999999999999873 5689999999999999999999999999 999999999
Q ss_pred eeecCC
Q 043011 96 YSVLED 101 (133)
Q Consensus 96 ~a~~~~ 101 (133)
|+.-.+
T Consensus 94 ~~~~~~ 99 (435)
T KOG0108|consen 94 YASNRK 99 (435)
T ss_pred cccccc
Confidence 987655
No 58
>smart00361 RRM_1 RNA recognition motif.
Probab=99.40 E-value=9.5e-13 Score=82.82 Aligned_cols=56 Identities=23% Similarity=0.310 Sum_probs=49.8
Q ss_pred HHHHHHHhh----cCCCeeEEE---Ec-----CCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCeeEEE
Q 043011 36 YEAIGSVFS----AFGDVKGIY---AA-----DDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRFLHI 94 (133)
Q Consensus 36 e~~L~~~F~----~fG~V~~v~---~~-----~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~l~V 94 (133)
+++|+++|+ +||.|.+|. +. +.++||+||+|.+.++|.+|++.|||+. +.||.|++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~---~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRY---FDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCE---ECCEEEEe
Confidence 678888888 999999884 22 4469999999999999999999999999 99999976
No 59
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.38 E-value=5.7e-13 Score=103.73 Aligned_cols=77 Identities=18% Similarity=0.261 Sum_probs=72.3
Q ss_pred CCCCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEcCCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCeeEEEEe
Q 043011 17 DERSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAADDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRFLHISY 96 (133)
Q Consensus 17 ~~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~l~V~~ 96 (133)
..++.+|+|+|+.+. ++..||++.|++||+|.++.+ -|+|+||.|.-.++|..|++.|||++ +.|++|+|+.
T Consensus 75 sk~stkl~vgNis~t--ctn~ElRa~fe~ygpviecdi---vkdy~fvh~d~~eda~~air~l~~~~---~~gk~m~vq~ 146 (346)
T KOG0109|consen 75 SKASTKLHVGNISPT--CTNQELRAKFEKYGPVIECDI---VKDYAFVHFDRAEDAVEAIRGLDNTE---FQGKRMHVQL 146 (346)
T ss_pred CCCccccccCCCCcc--ccCHHHhhhhcccCCceeeee---ecceeEEEEeeccchHHHHhcccccc---cccceeeeee
Confidence 457899999999999 999999999999999999988 58899999999999999999999999 9999999999
Q ss_pred eecCC
Q 043011 97 SVLED 101 (133)
Q Consensus 97 a~~~~ 101 (133)
|..+-
T Consensus 147 stsrl 151 (346)
T KOG0109|consen 147 STSRL 151 (346)
T ss_pred ecccc
Confidence 97664
No 60
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.36 E-value=6.9e-13 Score=110.11 Aligned_cols=73 Identities=25% Similarity=0.443 Sum_probs=68.9
Q ss_pred CCCCCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEcCCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCeeEE
Q 043011 16 EDERSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAADDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRFLH 93 (133)
Q Consensus 16 ~~~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~l~ 93 (133)
...++++|+|-||+.. |++++|+++|+.||+|+.|+.....+|.+||+|+|+++|+.|+++|++++ +.|+.|.
T Consensus 71 ~~~~~~~L~v~nl~~~--Vsn~~L~~~f~~yGeir~ir~t~~~~~~~~v~FyDvR~A~~Alk~l~~~~---~~~~~~k 143 (549)
T KOG4660|consen 71 KDMNQGTLVVFNLPRS--VSNDTLLRIFGAYGEIREIRETPNKRGIVFVEFYDVRDAERALKALNRRE---IAGKRIK 143 (549)
T ss_pred ccCccceEEEEecCCc--CCHHHHHHHHHhhcchhhhhcccccCceEEEEEeehHhHHHHHHHHHHHH---hhhhhhc
Confidence 3567899999999999 99999999999999999999988899999999999999999999999999 9998877
No 61
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.35 E-value=6.3e-12 Score=96.99 Aligned_cols=76 Identities=22% Similarity=0.317 Sum_probs=69.8
Q ss_pred CCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEc-----CCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCeeEEE
Q 043011 20 SPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAA-----DDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRFLHI 94 (133)
Q Consensus 20 ~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~-----~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~l~V 94 (133)
.-+|||=||.++ .+|.-|+++|++||.|..|++. .+-|||+||++.+.++|.-|+..|||.. +++|.|.|
T Consensus 278 g~ciFvYNLspd--~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~---lg~rvLQV 352 (360)
T KOG0145|consen 278 GWCIFVYNLSPD--ADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYR---LGDRVLQV 352 (360)
T ss_pred eeEEEEEecCCC--chHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCcc---ccceEEEE
Confidence 579999999999 9999999999999999999874 3458999999999999999999999999 99999999
Q ss_pred EeeecC
Q 043011 95 SYSVLE 100 (133)
Q Consensus 95 ~~a~~~ 100 (133)
.|-..+
T Consensus 353 sFKtnk 358 (360)
T KOG0145|consen 353 SFKTNK 358 (360)
T ss_pred EEecCC
Confidence 996543
No 62
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.32 E-value=9.2e-12 Score=98.78 Aligned_cols=80 Identities=15% Similarity=0.221 Sum_probs=70.3
Q ss_pred CCCCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEcCCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCeeEEEEe
Q 043011 17 DERSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAADDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRFLHISY 96 (133)
Q Consensus 17 ~~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~l~V~~ 96 (133)
+...++|||++|... ++|.+|++.|.+||+|++|.+ -..+++|||+|.+.++|+.|...+-... .+.|++|.|.|
T Consensus 225 D~~I~tLyIg~l~d~--v~e~dIrdhFyqyGeirsi~~-~~~~~CAFv~ftTR~aAE~Aae~~~n~l--vI~G~Rl~i~W 299 (377)
T KOG0153|consen 225 DTSIKTLYIGGLNDE--VLEQDIRDHFYQYGEIRSIRI-LPRKGCAFVTFTTREAAEKAAEKSFNKL--VINGFRLKIKW 299 (377)
T ss_pred ccceeEEEecccccc--hhHHHHHHHHhhcCCeeeEEe-ecccccceeeehhhHHHHHHHHhhccee--eecceEEEEEe
Confidence 455789999999998 999999999999999999998 4578899999999999999998774433 28999999999
Q ss_pred eecCC
Q 043011 97 SVLED 101 (133)
Q Consensus 97 a~~~~ 101 (133)
+.+..
T Consensus 300 g~~~~ 304 (377)
T KOG0153|consen 300 GRPKQ 304 (377)
T ss_pred CCCcc
Confidence 99943
No 63
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=2.8e-12 Score=102.32 Aligned_cols=83 Identities=20% Similarity=0.333 Sum_probs=74.5
Q ss_pred CCCCCCCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEc-----CCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCC
Q 043011 14 AGEDERSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAA-----DDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLA 88 (133)
Q Consensus 14 ~~~~~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~-----~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~ 88 (133)
+...+|...|||+.|+|- +++++|.-||+.||.|.++.+. +.+--||||+|++.+++++|.-.|++.. ++
T Consensus 233 Ad~~PPeNVLFVCKLNPV--TtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvL---ID 307 (479)
T KOG0415|consen 233 ADVKPPENVLFVCKLNPV--TTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVL---ID 307 (479)
T ss_pred cccCCCcceEEEEecCCc--ccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhccee---ec
Confidence 345678999999999999 9999999999999999999874 3455799999999999999999999999 99
Q ss_pred CeeEEEEeeecCC
Q 043011 89 NRFLHISYSVLED 101 (133)
Q Consensus 89 gr~l~V~~a~~~~ 101 (133)
+|.|||+||..-.
T Consensus 308 DrRIHVDFSQSVs 320 (479)
T KOG0415|consen 308 DRRIHVDFSQSVS 320 (479)
T ss_pred cceEEeehhhhhh
Confidence 9999999997543
No 64
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.31 E-value=1.6e-11 Score=99.33 Aligned_cols=108 Identities=18% Similarity=0.257 Sum_probs=93.2
Q ss_pred CCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEcCCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCeeEEEEeeec
Q 043011 20 SPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAADDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRFLHISYSVL 99 (133)
Q Consensus 20 ~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~l~V~~a~~ 99 (133)
+..|.|.||.+. .+|.+-|-.+|+-||+|.+|++..+.+-.|.|+|.|...|+-|+++|+|.. +.|++|+|.+|++
T Consensus 297 n~vllvsnln~~-~VT~d~LftlFgvYGdVqRVkil~nkkd~ALIQmsd~~qAqLA~~hL~g~~---l~gk~lrvt~SKH 372 (492)
T KOG1190|consen 297 NVVLLVSNLNEE-AVTPDVLFTLFGVYGDVQRVKILYNKKDNALIQMSDGQQAQLAMEHLEGHK---LYGKKLRVTLSKH 372 (492)
T ss_pred ceEEEEecCchh-ccchhHHHHHHhhhcceEEEEeeecCCcceeeeecchhHHHHHHHHhhcce---ecCceEEEeeccC
Confidence 588999999876 389999999999999999999987778899999999999999999999999 9999999999998
Q ss_pred CC---CCCC-----------------------------CCCcceeEeeecCCCCCchhhhhhhc
Q 043011 100 ED---SPAT-----------------------------RHITSSVPVSLVASELNIPGLHSCFM 131 (133)
Q Consensus 100 ~~---~~~~-----------------------------~~~~~~l~v~nl~~~~~~~~l~~~f~ 131 (133)
.. +++. .....++-.+|+|++++.++|.++|.
T Consensus 373 ~~vqlp~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~ 436 (492)
T KOG1190|consen 373 TNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQ 436 (492)
T ss_pred ccccCCCCCCccccccccCCCCchhhccCcccccccccCCchhheeeccCCcccchhHHHHhhh
Confidence 75 2210 12224566899999999999999985
No 65
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.27 E-value=7.3e-12 Score=100.41 Aligned_cols=96 Identities=26% Similarity=0.368 Sum_probs=84.3
Q ss_pred CCCCCCCCCCCCCCC----CCCCCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEc-----CCCCCeEEEEECCHHH
Q 043011 1 MGAPSNSRFRRPKAG----EDERSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAA-----DDSGARVIVSYFDEGS 71 (133)
Q Consensus 1 ~~~~~~~~f~~p~~~----~~~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~-----~~~kg~afV~f~~~~~ 71 (133)
+|+|||..-+.|... ....-.+|||..+.++ .+|+||+.+|+.||+|.++.+. +.+|||+|++|.+..+
T Consensus 187 VgrPsNmpQAQpiID~vqeeAk~fnRiYVaSvHpD--LSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs 264 (544)
T KOG0124|consen 187 VGRPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPD--LSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQS 264 (544)
T ss_pred ccCCCCCcccchHHHHHHHHHHhhheEEeeecCCC--ccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccc
Confidence 689999999998722 3345689999999999 9999999999999999999884 4589999999999999
Q ss_pred HHHHHHHhcCCCCCCCCCeeEEEEeeecCC
Q 043011 72 AQAAFNSLHSRPCPDLANRFLHISYSVLED 101 (133)
Q Consensus 72 A~~A~~~l~g~~~~~l~gr~l~V~~a~~~~ 101 (133)
...|+..||=.. ++|..|+|--+...+
T Consensus 265 ~~eAiasMNlFD---LGGQyLRVGk~vTPP 291 (544)
T KOG0124|consen 265 QSEAIASMNLFD---LGGQYLRVGKCVTPP 291 (544)
T ss_pred hHHHhhhcchhh---cccceEecccccCCC
Confidence 999999999877 999999998776554
No 66
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.27 E-value=9.8e-12 Score=91.24 Aligned_cols=80 Identities=28% Similarity=0.387 Sum_probs=71.3
Q ss_pred CCCCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEE---E---EcCCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCe
Q 043011 17 DERSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGI---Y---AADDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANR 90 (133)
Q Consensus 17 ~~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v---~---~~~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr 90 (133)
..-+.+|||+||++. ++|..|+++|++||.+.+. - .+++.+||+||.|.+.+.+.+|+..+||+. ++.|
T Consensus 93 l~vganlfvgNLd~~--vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~---l~nr 167 (203)
T KOG0131|consen 93 LDVGANLFVGNLDPE--VDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQY---LCNR 167 (203)
T ss_pred ccccccccccccCcc--hhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccch---hcCC
Confidence 345689999999999 9999999999999987652 1 135789999999999999999999999999 9999
Q ss_pred eEEEEeeecCC
Q 043011 91 FLHISYSVLED 101 (133)
Q Consensus 91 ~l~V~~a~~~~ 101 (133)
++.|+|+..++
T Consensus 168 ~itv~ya~k~~ 178 (203)
T KOG0131|consen 168 PITVSYAFKKD 178 (203)
T ss_pred ceEEEEEEecC
Confidence 99999999887
No 67
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.23 E-value=1.3e-11 Score=102.38 Aligned_cols=74 Identities=19% Similarity=0.379 Sum_probs=66.8
Q ss_pred CCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEc-----CCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCeeEEE
Q 043011 20 SPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAA-----DDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRFLHI 94 (133)
Q Consensus 20 ~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~-----~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~l~V 94 (133)
-..||||||..+ +++++|+.+|++||.|+.|.+. +..+||+||+|.+.++|.+|+..|||.+ |.||.|+|
T Consensus 278 ~~rl~vgnLHfN--ite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfe---lAGr~ikV 352 (549)
T KOG0147|consen 278 MRRLYVGNLHFN--ITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFE---LAGRLIKV 352 (549)
T ss_pred hhhhhhcccccC--chHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccce---ecCceEEE
Confidence 344999999999 9999999999999999999874 4579999999999999999999999999 99999997
Q ss_pred Eeee
Q 043011 95 SYSV 98 (133)
Q Consensus 95 ~~a~ 98 (133)
..-.
T Consensus 353 ~~v~ 356 (549)
T KOG0147|consen 353 SVVT 356 (549)
T ss_pred EEee
Confidence 6543
No 68
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.22 E-value=2.9e-11 Score=93.62 Aligned_cols=82 Identities=22% Similarity=0.309 Sum_probs=71.5
Q ss_pred CCCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEc----CCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCeeEE
Q 043011 18 ERSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAA----DDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRFLH 93 (133)
Q Consensus 18 ~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~----~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~l~ 93 (133)
...++||||-|... -+|||++++|..||+|+++.+. +.+||+|||.|.+-.+|+.||+.|||...-.-....|.
T Consensus 17 ~~drklfvgml~kq--q~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLV 94 (371)
T KOG0146|consen 17 GDDRKLFVGMLNKQ--QSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLV 94 (371)
T ss_pred ccchhhhhhhhccc--ccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceE
Confidence 35799999999999 9999999999999999999874 46899999999999999999999999872222357899
Q ss_pred EEeeecCC
Q 043011 94 ISYSVLED 101 (133)
Q Consensus 94 V~~a~~~~ 101 (133)
|.|+...+
T Consensus 95 VK~ADTdk 102 (371)
T KOG0146|consen 95 VKFADTDK 102 (371)
T ss_pred EEeccchH
Confidence 99997765
No 69
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.22 E-value=1.1e-11 Score=105.32 Aligned_cols=79 Identities=20% Similarity=0.358 Sum_probs=73.0
Q ss_pred CCCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEcCC-----CCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCeeE
Q 043011 18 ERSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAADD-----SGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRFL 92 (133)
Q Consensus 18 ~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~~~-----~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~l 92 (133)
....+|+|.|||.. .+..++++||+.||.|.+|+++.+ ++|||||+|-+.++|.+|+++|.++. |.||.|
T Consensus 611 k~~tKIlVRNipFe--At~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STH---lyGRrL 685 (725)
T KOG0110|consen 611 KKGTKILVRNIPFE--ATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTH---LYGRRL 685 (725)
T ss_pred cccceeeeeccchH--HHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccc---eechhh
Confidence 34679999999999 999999999999999999999643 68999999999999999999999999 999999
Q ss_pred EEEeeecCC
Q 043011 93 HISYSVLED 101 (133)
Q Consensus 93 ~V~~a~~~~ 101 (133)
.++||....
T Consensus 686 VLEwA~~d~ 694 (725)
T KOG0110|consen 686 VLEWAKSDN 694 (725)
T ss_pred heehhccch
Confidence 999998764
No 70
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.17 E-value=5.3e-11 Score=94.44 Aligned_cols=108 Identities=18% Similarity=0.208 Sum_probs=89.2
Q ss_pred CCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEc-----CCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCeeEE
Q 043011 19 RSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAA-----DDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRFLH 93 (133)
Q Consensus 19 ~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~-----~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~l~ 93 (133)
..++|||++|+++ +++|.|++.|++||+|.++.+. ++++||+||+|.+.+....++..-. +. |.||.+.
T Consensus 5 ~~~KlfiGgisw~--ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~-h~---~dgr~ve 78 (311)
T KOG4205|consen 5 ESGKLFIGGLSWE--TTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNART-HK---LDGRSVE 78 (311)
T ss_pred CCcceeecCcCcc--ccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecccc-cc---cCCcccc
Confidence 6789999999999 9999999999999999998874 4579999999998888877775433 33 8999999
Q ss_pred EEeeecCCCCCCCC---CcceeEeeecCCCCCchhhhhhhcc
Q 043011 94 ISYSVLEDSPATRH---ITSSVPVSLVASELNIPGLHSCFMT 132 (133)
Q Consensus 94 V~~a~~~~~~~~~~---~~~~l~v~nl~~~~~~~~l~~~f~~ 132 (133)
+.-|.+...+.+.. ....++|+.|+..++..++++-|..
T Consensus 79 ~k~av~r~~~~~~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~ 120 (311)
T KOG4205|consen 79 PKRAVSREDQTKVGRHLRTKKIFVGGLPPDTTEEDFKDYFEQ 120 (311)
T ss_pred ceeccCcccccccccccceeEEEecCcCCCCchHHHhhhhhc
Confidence 99888887332221 2446999999999999999998864
No 71
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=99.12 E-value=2e-10 Score=98.02 Aligned_cols=81 Identities=17% Similarity=0.308 Sum_probs=73.3
Q ss_pred CCCCCCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEc--------CCCCCeEEEEECCHHHHHHHHHHhcCCCCCC
Q 043011 15 GEDERSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAA--------DDSGARVIVSYFDEGSAQAAFNSLHSRPCPD 86 (133)
Q Consensus 15 ~~~~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~--------~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~ 86 (133)
.+.+.+.+|||+||++. ++++.|-..|+.||+|.++++. ...+.++||.|-+..+|+.|+..|+|+.
T Consensus 169 dgDP~TTNlyv~Nlnps--v~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~i--- 243 (877)
T KOG0151|consen 169 DGDPQTTNLYVGNLNPS--VDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGII--- 243 (877)
T ss_pred CCCCcccceeeecCCcc--ccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhccee---
Confidence 45777899999999999 9999999999999999999874 2356789999999999999999999999
Q ss_pred CCCeeEEEEeeecC
Q 043011 87 LANRFLHISYSVLE 100 (133)
Q Consensus 87 l~gr~l~V~~a~~~ 100 (133)
+.++.+++-|+++-
T Consensus 244 v~~~e~K~gWgk~V 257 (877)
T KOG0151|consen 244 VMEYEMKLGWGKAV 257 (877)
T ss_pred eeeeeeeecccccc
Confidence 99999999999544
No 72
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.10 E-value=1.5e-10 Score=89.74 Aligned_cols=81 Identities=21% Similarity=0.256 Sum_probs=74.0
Q ss_pred CCCCCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEc-----CCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCe
Q 043011 16 EDERSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAA-----DDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANR 90 (133)
Q Consensus 16 ~~~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~-----~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr 90 (133)
..+..++|||=.||.+ ..+.||-..|-.||.|.+.++. ..+|-|+||.|.+..+|+.||.+|||.. ++-+
T Consensus 281 eGPeGCNlFIYHLPQE--FgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQ---IGMK 355 (371)
T KOG0146|consen 281 EGPEGCNLFIYHLPQE--FGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQ---IGMK 355 (371)
T ss_pred cCCCcceEEEEeCchh--hccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchh---hhhh
Confidence 4567899999999999 9999999999999999887663 4578899999999999999999999999 9999
Q ss_pred eEEEEeeecCC
Q 043011 91 FLHISYSVLED 101 (133)
Q Consensus 91 ~l~V~~a~~~~ 101 (133)
+|+|+.-+|++
T Consensus 356 RLKVQLKRPkd 366 (371)
T KOG0146|consen 356 RLKVQLKRPKD 366 (371)
T ss_pred hhhhhhcCccc
Confidence 99999988886
No 73
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.09 E-value=1.3e-10 Score=87.83 Aligned_cols=103 Identities=13% Similarity=0.182 Sum_probs=84.3
Q ss_pred CeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEcCCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCeeEEEEeeecC
Q 043011 21 PNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAADDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRFLHISYSVLE 100 (133)
Q Consensus 21 ~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~l~V~~a~~~ 100 (133)
..+||+++++. +.+.+|.++|..||.+.++.+ ..||+||+|.|..+|..|+..|||++ |.|-.+.|+|+..+
T Consensus 2 ~rv~vg~~~~~--~~~~d~E~~f~~yg~~~d~~m---k~gf~fv~fed~rda~Dav~~l~~~~---l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 2 PRVYIGRLPYR--ARERDVERFFKGYGKIPDADM---KNGFGFVEFEDPRDADDAVHDLDGKE---LCGERLVVEHARGK 73 (216)
T ss_pred CceeecccCCc--cchhHHHHHHhhcccccccee---ecccceeccCchhhhhcccchhcCce---ecceeeeeeccccc
Confidence 46899999999 999999999999999999988 57899999999999999999999999 99988999999853
Q ss_pred C-----CCC-----------C-CCCcceeEeeecCCCCCchhhhhhhc
Q 043011 101 D-----SPA-----------T-RHITSSVPVSLVASELNIPGLHSCFM 131 (133)
Q Consensus 101 ~-----~~~-----------~-~~~~~~l~v~nl~~~~~~~~l~~~f~ 131 (133)
. +.. . ....-.+.|-+++..++|.+|...|-
T Consensus 74 ~~~~g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~ 121 (216)
T KOG0106|consen 74 RRGRGRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFR 121 (216)
T ss_pred ccccCCCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhc
Confidence 1 110 0 11112266677888888888877663
No 74
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.08 E-value=8.3e-10 Score=90.33 Aligned_cols=107 Identities=14% Similarity=0.102 Sum_probs=86.9
Q ss_pred CCCeEEEeccCCCCCCCHHHHHHHh-hcCCCeeEEEEc----CCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCeeEE
Q 043011 19 RSPNLFVANCGPAVGVSYEAIGSVF-SAFGDVKGIYAA----DDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRFLH 93 (133)
Q Consensus 19 ~~~~L~V~Nl~~~~~vte~~L~~~F-~~fG~V~~v~~~----~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~l~ 93 (133)
..+.+||+|||.+ +...+||++| ++-|+|+-|.+. +|+||+|.|+|++.|.+++|++.||-.. +.||.|.
T Consensus 43 r~R~vfItNIpyd--~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~---~~GR~l~ 117 (608)
T KOG4212|consen 43 RDRSVFITNIPYD--YRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYE---VNGRELV 117 (608)
T ss_pred ccceEEEecCcch--hhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhcc---ccCceEE
Confidence 4567999999999 9999999999 556899888763 6899999999999999999999999999 9999999
Q ss_pred EEeeecCC-CC--CCCCCcceeEeeecCCCCCchhhhhhh
Q 043011 94 ISYSVLED-SP--ATRHITSSVPVSLVASELNIPGLHSCF 130 (133)
Q Consensus 94 V~~a~~~~-~~--~~~~~~~~l~v~nl~~~~~~~~l~~~f 130 (133)
|.=-.... .+ .-....++.+++++.....+..|..-|
T Consensus 118 vKEd~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g 157 (608)
T KOG4212|consen 118 VKEDHDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGG 157 (608)
T ss_pred EeccCchhhhhhhheeeccCcccccCcceecccccccccC
Confidence 96543322 11 112234668899999998888887665
No 75
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.96 E-value=4.3e-09 Score=79.80 Aligned_cols=80 Identities=20% Similarity=0.218 Sum_probs=67.1
Q ss_pred CCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEE--cCCC----CCeEEEEECCHHHHHHHHHHhcCCCCCCCCCeeEE
Q 043011 20 SPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYA--ADDS----GARVIVSYFDEGSAQAAFNSLHSRPCPDLANRFLH 93 (133)
Q Consensus 20 ~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~--~~~~----kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~l~ 93 (133)
-+||||+.||.+ +..-||+-+|..|---+...+ +.+. +-+|||+|.+.++|..|+++|||...+.=.+..|+
T Consensus 34 VRTLFVSGLP~D--vKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLh 111 (284)
T KOG1457|consen 34 VRTLFVSGLPND--VKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLH 111 (284)
T ss_pred cceeeeccCCcc--cCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeE
Confidence 589999999999 999999999999965555443 3333 36899999999999999999999994444589999
Q ss_pred EEeeecCC
Q 043011 94 ISYSVLED 101 (133)
Q Consensus 94 V~~a~~~~ 101 (133)
|++++.+.
T Consensus 112 iElAKSNt 119 (284)
T KOG1457|consen 112 IELAKSNT 119 (284)
T ss_pred eeehhcCc
Confidence 99998775
No 76
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.94 E-value=2.1e-09 Score=90.44 Aligned_cols=79 Identities=19% Similarity=0.286 Sum_probs=69.5
Q ss_pred CCCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEcC-----CCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCeeE
Q 043011 18 ERSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAAD-----DSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRFL 92 (133)
Q Consensus 18 ~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~~-----~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~l 92 (133)
..+++|||+.|+.. +...+|+.||++||+|...++.. -.+-|+||++.+.++|.++|..||-++ |.||.|
T Consensus 403 ~~gRNlWVSGLSst--TRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTE---LHGrmI 477 (940)
T KOG4661|consen 403 TLGRNLWVSGLSST--TRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTE---LHGRMI 477 (940)
T ss_pred ccccceeeeccccc--hhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhh---hcceee
Confidence 35689999999999 99999999999999998877632 245699999999999999999999999 999999
Q ss_pred EEEeeecCC
Q 043011 93 HISYSVLED 101 (133)
Q Consensus 93 ~V~~a~~~~ 101 (133)
.|+-++...
T Consensus 478 SVEkaKNEp 486 (940)
T KOG4661|consen 478 SVEKAKNEP 486 (940)
T ss_pred eeeecccCc
Confidence 999887554
No 77
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.93 E-value=7.7e-09 Score=79.57 Aligned_cols=78 Identities=22% Similarity=0.242 Sum_probs=69.7
Q ss_pred CCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEc----CCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCeeEEE
Q 043011 19 RSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAA----DDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRFLHI 94 (133)
Q Consensus 19 ~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~----~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~l~V 94 (133)
...+|+|.||+.. ++++||+++|..||.++.+-+. +.+.|.|-|.|...++|..|++.+||.. ++|+.|.+
T Consensus 82 ~~~~v~v~NL~~~--V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~---ldG~~mk~ 156 (243)
T KOG0533|consen 82 RSTKVNVSNLPYG--VIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVA---LDGRPMKI 156 (243)
T ss_pred CcceeeeecCCcC--cchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcc---cCCceeee
Confidence 3478999999999 9999999999999998888763 4678999999999999999999999988 99999998
Q ss_pred EeeecCC
Q 043011 95 SYSVLED 101 (133)
Q Consensus 95 ~~a~~~~ 101 (133)
....+..
T Consensus 157 ~~i~~~~ 163 (243)
T KOG0533|consen 157 EIISSPS 163 (243)
T ss_pred EEecCcc
Confidence 8776554
No 78
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.92 E-value=5.5e-09 Score=78.03 Aligned_cols=78 Identities=19% Similarity=0.191 Sum_probs=70.4
Q ss_pred CCCCeEEEeccCCCCCCCHHHHHHHhhcC-CCeeEEEE-----cCCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCee
Q 043011 18 ERSPNLFVANCGPAVGVSYEAIGSVFSAF-GDVKGIYA-----ADDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRF 91 (133)
Q Consensus 18 ~~~~~L~V~Nl~~~~~vte~~L~~~F~~f-G~V~~v~~-----~~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~ 91 (133)
....-+||..++.. +-+.++...|.+| |.|..+++ ++++||||||+|++.+.|..|-+.||+.. +.|+.
T Consensus 47 ~~~g~~~~~~~p~g--~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYL---l~e~l 121 (214)
T KOG4208|consen 47 EIEGVVYVDHIPHG--FFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYL---LMEHL 121 (214)
T ss_pred CCccceeecccccc--hhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhh---hhhhe
Confidence 45678899999988 9999999999999 67888877 46799999999999999999999999999 99999
Q ss_pred EEEEeeecC
Q 043011 92 LHISYSVLE 100 (133)
Q Consensus 92 l~V~~a~~~ 100 (133)
|.+.|-.|.
T Consensus 122 L~c~vmppe 130 (214)
T KOG4208|consen 122 LECHVMPPE 130 (214)
T ss_pred eeeEEeCch
Confidence 999998777
No 79
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.92 E-value=3.4e-09 Score=86.80 Aligned_cols=75 Identities=16% Similarity=0.285 Sum_probs=67.3
Q ss_pred CCCCCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEc--CCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCeeEE
Q 043011 16 EDERSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAA--DDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRFLH 93 (133)
Q Consensus 16 ~~~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~--~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~l~ 93 (133)
.....++|+|+|||.+ .|...|++-|..||.|..+.+. ++++| .|.|.+.++|+.|+..|+|.. |.||.|.
T Consensus 532 aarKa~qIiirNlP~d--fTWqmlrDKfre~G~v~yadime~GkskG--VVrF~s~edAEra~a~Mngs~---l~Gr~I~ 604 (608)
T KOG4212|consen 532 AARKACQIIIRNLPFD--FTWQMLRDKFREIGHVLYADIMENGKSKG--VVRFFSPEDAERACALMNGSR---LDGRNIK 604 (608)
T ss_pred ccccccEEEEecCCcc--ccHHHHHHHHHhccceehhhhhccCCccc--eEEecCHHHHHHHHHHhccCc---ccCceee
Confidence 3456788999999999 9999999999999999888773 55666 899999999999999999999 9999999
Q ss_pred EEee
Q 043011 94 ISYS 97 (133)
Q Consensus 94 V~~a 97 (133)
|+|.
T Consensus 605 V~y~ 608 (608)
T KOG4212|consen 605 VTYF 608 (608)
T ss_pred eeeC
Confidence 9984
No 80
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=98.76 E-value=3e-08 Score=80.55 Aligned_cols=93 Identities=22% Similarity=0.242 Sum_probs=78.4
Q ss_pred CCCCCCCCCCC----CCCCCCCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeE-EEEcCCCCCeEEEEECCHHHHHHHHH
Q 043011 3 APSNSRFRRPK----AGEDERSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKG-IYAADDSGARVIVSYFDEGSAQAAFN 77 (133)
Q Consensus 3 ~~~~~~f~~p~----~~~~~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~-v~~~~~~kg~afV~f~~~~~A~~A~~ 77 (133)
....++|.+|. ....+|+.+|+++|+|++ ++||+|+..|..-|-..+ .....+.+-+|++++++.++|..|+.
T Consensus 393 ~spLhrfkkpgsKN~~ni~PpsatlHlsnip~s--vsee~lk~~f~~~g~~vkafkff~kd~kmal~q~~sveeA~~ali 470 (492)
T KOG1190|consen 393 NSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPS--VSEEDLKNLFQEPGGQVKAFKFFQKDRKMALPQLESVEEAIQALI 470 (492)
T ss_pred CCchhhccCcccccccccCCchhheeeccCCcc--cchhHHHHhhhcCCceEEeeeecCCCcceeecccCChhHhhhhcc
Confidence 34567888887 346789999999999999 999999999999987644 44456788899999999999999999
Q ss_pred HhcCCCCCCCCC-eeEEEEeeecC
Q 043011 78 SLHSRPCPDLAN-RFLHISYSVLE 100 (133)
Q Consensus 78 ~l~g~~~~~l~g-r~l~V~~a~~~ 100 (133)
.+|.+. +++ ..|+|.||+..
T Consensus 471 ~~hnh~---lgen~hlRvSFSks~ 491 (492)
T KOG1190|consen 471 DLHNHY---LGENHHLRVSFSKST 491 (492)
T ss_pred cccccc---CCCCceEEEEeeccc
Confidence 999988 775 48999998753
No 81
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.72 E-value=2.8e-08 Score=81.73 Aligned_cols=74 Identities=19% Similarity=0.240 Sum_probs=61.6
Q ss_pred CCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEc-----CCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCeeEEE
Q 043011 20 SPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAA-----DDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRFLHI 94 (133)
Q Consensus 20 ~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~-----~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~l~V 94 (133)
..+|||+|||.+ ++.++|+++|.+||+|+...+. ++...|+||+|++.++++.|+.+- =.. +++++|.|
T Consensus 288 ~~~i~V~nlP~d--a~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~As-p~~---ig~~kl~V 361 (419)
T KOG0116|consen 288 GLGIFVKNLPPD--ATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEAS-PLE---IGGRKLNV 361 (419)
T ss_pred ccceEeecCCCC--CCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcC-ccc---cCCeeEEE
Confidence 356999999999 9999999999999999887653 223379999999999999999865 334 89999999
Q ss_pred Eeeec
Q 043011 95 SYSVL 99 (133)
Q Consensus 95 ~~a~~ 99 (133)
+=-++
T Consensus 362 eek~~ 366 (419)
T KOG0116|consen 362 EEKRP 366 (419)
T ss_pred Eeccc
Confidence 85544
No 82
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.70 E-value=1.2e-08 Score=77.07 Aligned_cols=79 Identities=20% Similarity=0.119 Sum_probs=70.0
Q ss_pred CCCCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEcC----CCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCeeE
Q 043011 17 DERSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAAD----DSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRFL 92 (133)
Q Consensus 17 ~~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~~----~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~l 92 (133)
.+..+||||+|+... +++|-|.++|-+-|+|.+|.+.. +.| ||||.|.++-+..-|++.+||-. +.++.+
T Consensus 6 ae~drtl~v~n~~~~--v~eelL~ElfiqaGPV~kv~ip~~~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~---l~~~e~ 79 (267)
T KOG4454|consen 6 AEMDRTLLVQNMYSG--VSEELLSELFIQAGPVYKVGIPSGQDQEQK-FAYVFFPNENSVQLAGQLENGDD---LEEDEE 79 (267)
T ss_pred cchhhHHHHHhhhhh--hhHHHHHHHhhccCceEEEeCCCCccCCCc-eeeeecccccchhhhhhhcccch---hccchh
Confidence 345799999999999 99999999999999999999852 234 99999999999999999999999 999999
Q ss_pred EEEeeecCC
Q 043011 93 HISYSVLED 101 (133)
Q Consensus 93 ~V~~a~~~~ 101 (133)
.|.+-.-..
T Consensus 80 q~~~r~G~s 88 (267)
T KOG4454|consen 80 QRTLRCGNS 88 (267)
T ss_pred hcccccCCC
Confidence 988866554
No 83
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.67 E-value=4.6e-08 Score=74.91 Aligned_cols=80 Identities=13% Similarity=0.236 Sum_probs=70.7
Q ss_pred CCCCCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEc-----CCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCe
Q 043011 16 EDERSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAA-----DDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANR 90 (133)
Q Consensus 16 ~~~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~-----~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr 90 (133)
.....+.+||+|++.. +|.+++...|+-||.|..+.+. +..|||+||+|.+.+.+++|+. |||.. +.|+
T Consensus 97 ~~~d~~sv~v~nvd~~--~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~---i~~~ 170 (231)
T KOG4209|consen 97 KEVDAPSVWVGNVDFL--VTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSE---IPGP 170 (231)
T ss_pred hccCCceEEEeccccc--cccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcc---cccc
Confidence 3456789999999999 9999999999999999877653 3579999999999999999999 99999 9999
Q ss_pred eEEEEeeecCC
Q 043011 91 FLHISYSVLED 101 (133)
Q Consensus 91 ~l~V~~a~~~~ 101 (133)
.+.|.+-+-..
T Consensus 171 ~i~vt~~r~~~ 181 (231)
T KOG4209|consen 171 AIEVTLKRTNV 181 (231)
T ss_pred cceeeeeeeec
Confidence 99999877664
No 84
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=98.67 E-value=1.6e-07 Score=75.83 Aligned_cols=88 Identities=18% Similarity=0.235 Sum_probs=77.4
Q ss_pred CCCCCCCCCCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEcCCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCC-C
Q 043011 11 RPKAGEDERSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAADDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLA-N 89 (133)
Q Consensus 11 ~p~~~~~~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~-g 89 (133)
||......++..|.+.=|++.-.+|-+-|+.+....|+|.+|.+..++--.|.|+|++.+.|++|..+|||.. +. |
T Consensus 111 R~g~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkkngVQAmVEFdsv~~AqrAk~alNGAD---IYsG 187 (494)
T KOG1456|consen 111 RPGDESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKKNGVQAMVEFDSVEVAQRAKAALNGAD---IYSG 187 (494)
T ss_pred cCCCCCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEeccceeeEEeechhHHHHHHHhhccccc---cccc
Confidence 5665667788899988888776699999999999999999999988876789999999999999999999998 54 3
Q ss_pred -eeEEEEeeecCC
Q 043011 90 -RFLHISYSVLED 101 (133)
Q Consensus 90 -r~l~V~~a~~~~ 101 (133)
+.|+|+||+|..
T Consensus 188 CCTLKIeyAkP~r 200 (494)
T KOG1456|consen 188 CCTLKIEYAKPTR 200 (494)
T ss_pred ceeEEEEecCcce
Confidence 799999999876
No 85
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.66 E-value=1.6e-07 Score=70.91 Aligned_cols=80 Identities=19% Similarity=0.279 Sum_probs=72.1
Q ss_pred CCCCCCCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEcCCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCC-CeeE
Q 043011 14 AGEDERSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAADDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLA-NRFL 92 (133)
Q Consensus 14 ~~~~~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~-gr~l 92 (133)
....+|...||+.|||.. ++.+.|..+|.+|.-.++|++....++.|||+|.+...|..|.++|+|.. +. ...+
T Consensus 140 ~~~~ppn~ilf~~niP~e--s~~e~l~~lf~qf~g~keir~i~~~~~iAfve~~~d~~a~~a~~~lq~~~---it~~~~m 214 (221)
T KOG4206|consen 140 AQMAPPNNILFLTNIPSE--SESEMLSDLFEQFPGFKEIRLIPPRSGIAFVEFLSDRQASAAQQALQGFK---ITKKNTM 214 (221)
T ss_pred ccCCCCceEEEEecCCcc--hhHHHHHHHHhhCcccceeEeccCCCceeEEecchhhhhHHHhhhhccce---eccCceE
Confidence 345678999999999999 99999999999999999999977789999999999999999999999988 65 7788
Q ss_pred EEEeee
Q 043011 93 HISYSV 98 (133)
Q Consensus 93 ~V~~a~ 98 (133)
.|.|+.
T Consensus 215 ~i~~a~ 220 (221)
T KOG4206|consen 215 QITFAK 220 (221)
T ss_pred EecccC
Confidence 888874
No 86
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.61 E-value=3.2e-08 Score=75.10 Aligned_cols=65 Identities=17% Similarity=0.267 Sum_probs=54.8
Q ss_pred CCCCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEcC-CCCCeEEEEECCHHHHHHHHHHhcCCC
Q 043011 17 DERSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAAD-DSGARVIVSYFDEGSAQAAFNSLHSRP 83 (133)
Q Consensus 17 ~~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~~-~~kg~afV~f~~~~~A~~A~~~l~g~~ 83 (133)
...+.||||.||+++ ++|++|+.+|+.|-....+++.. ...-.||++|++.+.|..|+..|+|..
T Consensus 207 ~~acstlfianl~~~--~~ed~l~~~~~~~~gf~~l~~~~~~g~~vaf~~~~~~~~at~am~~lqg~~ 272 (284)
T KOG1457|consen 207 ARACSTLFIANLGPN--CTEDELKQLLSRYPGFHILKIRARGGMPVAFADFEEIEQATDAMNHLQGNL 272 (284)
T ss_pred chhhhhHhhhccCCC--CCHHHHHHHHHhCCCceEEEEecCCCcceEeecHHHHHHHHHHHHHhhcce
Confidence 345689999999999 99999999999998766666632 233478999999999999999999987
No 87
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.57 E-value=5.3e-07 Score=58.82 Aligned_cols=71 Identities=17% Similarity=0.251 Sum_probs=50.0
Q ss_pred CeEEEeccCCCCCCCHHH----HHHHhhcCC-CeeEEEEcCCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCeeEEEE
Q 043011 21 PNLFVANCGPAVGVSYEA----IGSVFSAFG-DVKGIYAADDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRFLHIS 95 (133)
Q Consensus 21 ~~L~V~Nl~~~~~vte~~----L~~~F~~fG-~V~~v~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~l~V~ 95 (133)
..|+|.|||.+ .+... |++++.-+| .|.+| ..+-|+|.|.+.+.|+.|...|+|.. +.|++|.|+
T Consensus 3 s~L~V~NLP~~--~d~~~I~~RL~qLsdNCGGkVl~v-----~~~tAilrF~~~~~A~RA~KRmegEd---VfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTN--KDPSSIKNRLRQLSDNCGGKVLSV-----SGGTAILRFPNQEFAERAQKRMEGED---VFGNKISVS 72 (90)
T ss_dssp EEEEEES--TT--S-HHHHHHHHHHHHHTTT--EEE-------TT-EEEEESSHHHHHHHHHHHTT-----SSSS--EEE
T ss_pred cEEEEecCCCC--CCHHHHHHHHHHHhhccCCEEEEE-----eCCEEEEEeCCHHHHHHHHHhhcccc---cccceEEEE
Confidence 46999999998 77554 578888996 67766 35789999999999999999999999 999999999
Q ss_pred eeecCC
Q 043011 96 YSVLED 101 (133)
Q Consensus 96 ~a~~~~ 101 (133)
|+....
T Consensus 73 ~~~~~r 78 (90)
T PF11608_consen 73 FSPKNR 78 (90)
T ss_dssp SS--S-
T ss_pred EcCCcc
Confidence 985443
No 88
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.54 E-value=1.7e-07 Score=74.62 Aligned_cols=77 Identities=16% Similarity=0.261 Sum_probs=66.4
Q ss_pred CCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEc-----CCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCeeEE
Q 043011 19 RSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAA-----DDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRFLH 93 (133)
Q Consensus 19 ~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~-----~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~l~ 93 (133)
.++++||+.|+.+ ++++++++.|.+||.|.++.+. .+.+||+||+|.+.++..++.. ..-+. +.|+.+.
T Consensus 96 ~tkkiFvGG~~~~--~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~---~~gk~ve 169 (311)
T KOG4205|consen 96 RTKKIFVGGLPPD--TTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHD---FNGKKVE 169 (311)
T ss_pred ceeEEEecCcCCC--CchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-cceee---ecCceee
Confidence 4679999999999 9999999999999998887663 4579999999999888887664 44555 9999999
Q ss_pred EEeeecCC
Q 043011 94 ISYSVLED 101 (133)
Q Consensus 94 V~~a~~~~ 101 (133)
|.-|.|++
T Consensus 170 vkrA~pk~ 177 (311)
T KOG4205|consen 170 VKRAIPKE 177 (311)
T ss_pred Eeeccchh
Confidence 99999987
No 89
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.53 E-value=1e-06 Score=73.02 Aligned_cols=108 Identities=11% Similarity=0.152 Sum_probs=83.3
Q ss_pred CCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEc---CCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCeeEEEE
Q 043011 19 RSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAA---DDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRFLHIS 95 (133)
Q Consensus 19 ~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~---~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~l~V~ 95 (133)
...-|-+..||++ +|++||.++|+-++ |+++.+. ++..|=|||+|.+.+++++|++ .|-.. +..|-|.|=
T Consensus 9 ~~~~vr~rGLPws--at~~ei~~Ff~~~~-I~~~~~~r~~Gr~sGeA~Ve~~seedv~~Alk-kdR~~---mg~RYIEVf 81 (510)
T KOG4211|consen 9 TAFEVRLRGLPWS--ATEKEILDFFSNCG-IENLEIPRRNGRPSGEAYVEFTSEEDVEKALK-KDRES---MGHRYIEVF 81 (510)
T ss_pred cceEEEecCCCcc--ccHHHHHHHHhcCc-eeEEEEeccCCCcCcceEEEeechHHHHHHHH-hhHHH---hCCceEEEE
Confidence 3456778899999 99999999999997 7776653 5678999999999999999997 45455 677888774
Q ss_pred eeecCC--------CCCCCCCcceeEeeecCCCCCchhhhhhhccC
Q 043011 96 YSVLED--------SPATRHITSSVPVSLVASELNIPGLHSCFMTL 133 (133)
Q Consensus 96 ~a~~~~--------~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~ 133 (133)
-+...+ .+....+.+.+-+-.||..|+..++.++|.-|
T Consensus 82 ~~~~~e~d~~~~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL 127 (510)
T KOG4211|consen 82 TAGGAEADWVMRPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGL 127 (510)
T ss_pred ccCCccccccccCCCCCCCCCCceEEecCCCccCcHHHHHHHhcCC
Confidence 443332 22222445668888999999999999999754
No 90
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.52 E-value=1.4e-06 Score=72.52 Aligned_cols=109 Identities=18% Similarity=0.145 Sum_probs=77.3
Q ss_pred CCCCCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEc--------CCCCC---eEEEEECCHHHHHHHHHHhcCCCC
Q 043011 16 EDERSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAA--------DDSGA---RVIVSYFDEGSAQAAFNSLHSRPC 84 (133)
Q Consensus 16 ~~~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~--------~~~kg---~afV~f~~~~~A~~A~~~l~g~~~ 84 (133)
...-++++|||.|+++ ++|++|...|..||.+. |... ...+| |+|..|+++.+.+.-+.+..-
T Consensus 255 ~~~~S~KVFvGGlp~d--ise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~--- 328 (520)
T KOG0129|consen 255 SPRYSRKVFVGGLPWD--ITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSE--- 328 (520)
T ss_pred ccccccceeecCCCcc--ccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhh---
Confidence 3446899999999999 99999999999999874 2222 12466 999999999988877766542
Q ss_pred CCCCCeeEEEEeeecCC--------------------CCCCCCCcceeEeeecCCCCCchhhhhhhccC
Q 043011 85 PDLANRFLHISYSVLED--------------------SPATRHITSSVPVSLVASELNIPGLHSCFMTL 133 (133)
Q Consensus 85 ~~l~gr~l~V~~a~~~~--------------------~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~ 133 (133)
....+.+..+.+.. ....-...+|++||.|+-.++-.+|..||..|
T Consensus 329 ---~~~~~yf~vss~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~l 394 (520)
T KOG0129|consen 329 ---GEGNYYFKVSSPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDL 394 (520)
T ss_pred ---cccceEEEEecCcccccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHh
Confidence 12222222222111 11123456789999999999999999998743
No 91
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.51 E-value=1.1e-06 Score=58.83 Aligned_cols=79 Identities=13% Similarity=0.267 Sum_probs=63.7
Q ss_pred CeEEEeccCCCCCCCHHHHHHHhhcC--CCeeEEEEc-----CCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCC-CeeE
Q 043011 21 PNLFVANCGPAVGVSYEAIGSVFSAF--GDVKGIYAA-----DDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLA-NRFL 92 (133)
Q Consensus 21 ~~L~V~Nl~~~~~vte~~L~~~F~~f--G~V~~v~~~-----~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~-gr~l 92 (133)
.||-|+|||.. .|.++|.+++... |...-+.++ ..+.|||||.|.+.++|..-.+..+|+.++... .+..
T Consensus 2 TTvMirNIPn~--~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc 79 (97)
T PF04059_consen 2 TTVMIRNIPNK--YTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVC 79 (97)
T ss_pred eeEEEecCCCC--CCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEE
Confidence 58999999999 9999999887654 445445543 347899999999999999999999999966554 5666
Q ss_pred EEEeeecCC
Q 043011 93 HISYSVLED 101 (133)
Q Consensus 93 ~V~~a~~~~ 101 (133)
.|.||+-+.
T Consensus 80 ~i~yAriQG 88 (97)
T PF04059_consen 80 EISYARIQG 88 (97)
T ss_pred EEehhHhhC
Confidence 899987654
No 92
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.50 E-value=4.8e-07 Score=72.23 Aligned_cols=75 Identities=13% Similarity=0.243 Sum_probs=65.3
Q ss_pred CCeEEEeccCCCCCCCHHHHHHHhhcCCCeeE--------EEE----cCCCCCeEEEEECCHHHHHHHHHHhcCCCCCCC
Q 043011 20 SPNLFVANCGPAVGVSYEAIGSVFSAFGDVKG--------IYA----ADDSGARVIVSYFDEGSAQAAFNSLHSRPCPDL 87 (133)
Q Consensus 20 ~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~--------v~~----~~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l 87 (133)
+..|||+|||.+ +|.+++.++|++||-|.+ |++ .++-||=|.+.|...++...|+..|++.. +
T Consensus 134 Nt~VYVsgLP~D--iT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~---~ 208 (382)
T KOG1548|consen 134 NTSVYVSGLPLD--ITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDE---L 208 (382)
T ss_pred CceEEecCCCCc--ccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCccc---c
Confidence 567999999999 999999999999997743 222 24578999999999999999999999999 9
Q ss_pred CCeeEEEEeeec
Q 043011 88 ANRFLHISYSVL 99 (133)
Q Consensus 88 ~gr~l~V~~a~~ 99 (133)
.|+.|+|+-|+-
T Consensus 209 rg~~~rVerAkf 220 (382)
T KOG1548|consen 209 RGKKLRVERAKF 220 (382)
T ss_pred cCcEEEEehhhh
Confidence 999999987753
No 93
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.42 E-value=2.8e-07 Score=71.01 Aligned_cols=78 Identities=17% Similarity=0.255 Sum_probs=65.9
Q ss_pred CCCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEE-----cCCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCeeE
Q 043011 18 ERSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYA-----ADDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRFL 92 (133)
Q Consensus 18 ~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~-----~~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~l 92 (133)
+..-+||.|.|+-+ ++++-|.+.|.+|-.....++ +++++||+||.|.+.+++..|+..|+|+- ++.|+|
T Consensus 188 ~~DfRIfcgdlgNe--vnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gky---Vgsrpi 262 (290)
T KOG0226|consen 188 EDDFRIFCGDLGNE--VNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKY---VGSRPI 262 (290)
T ss_pred cccceeeccccccc--ccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccc---cccchh
Confidence 34578999999999 999999999999975544333 47899999999999999999999999999 999998
Q ss_pred EEEeeecC
Q 043011 93 HISYSVLE 100 (133)
Q Consensus 93 ~V~~a~~~ 100 (133)
..+-+.-+
T Consensus 263 klRkS~wk 270 (290)
T KOG0226|consen 263 KLRKSEWK 270 (290)
T ss_pred HhhhhhHH
Confidence 87655433
No 94
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=98.38 E-value=8.5e-07 Score=70.98 Aligned_cols=76 Identities=20% Similarity=0.383 Sum_probs=63.4
Q ss_pred CCeEEEeccCCCCCCCHHH----H--HHHhhcCCCeeEEEEcCCC------CCe--EEEEECCHHHHHHHHHHhcCCCCC
Q 043011 20 SPNLFVANCGPAVGVSYEA----I--GSVFSAFGDVKGIYAADDS------GAR--VIVSYFDEGSAQAAFNSLHSRPCP 85 (133)
Q Consensus 20 ~~~L~V~Nl~~~~~vte~~----L--~~~F~~fG~V~~v~~~~~~------kg~--afV~f~~~~~A~~A~~~l~g~~~~ 85 (133)
..-+||-.|++. +-+|+ | .+.|++||.|..|.+-++. .+. .||+|.+.++|..||.+.+|..
T Consensus 114 KNLvYVigi~pk--va~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~-- 189 (480)
T COG5175 114 KNLVYVIGIPPK--VADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSL-- 189 (480)
T ss_pred cceeEEecCCCC--CCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhcccc--
Confidence 456789999999 87777 3 4899999999999984321 222 3999999999999999999999
Q ss_pred CCCCeeEEEEeeecC
Q 043011 86 DLANRFLHISYSVLE 100 (133)
Q Consensus 86 ~l~gr~l~V~~a~~~ 100 (133)
++||.|+..|...+
T Consensus 190 -~DGr~lkatYGTTK 203 (480)
T COG5175 190 -LDGRVLKATYGTTK 203 (480)
T ss_pred -ccCceEeeecCchH
Confidence 99999999998765
No 95
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.35 E-value=4.3e-07 Score=68.80 Aligned_cols=74 Identities=20% Similarity=0.275 Sum_probs=63.5
Q ss_pred CCCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEcCCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCeeEEEEee
Q 043011 18 ERSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAADDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRFLHISYS 97 (133)
Q Consensus 18 ~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~l~V~~a 97 (133)
.....|.|.|++.. +...+|++.|.+||.+..... .++++||.|.+.++|..|+..|+|.. +.++.|.+.++
T Consensus 97 ~s~~r~~~~~~~~r--~~~qdl~d~~~~~g~~~~~~~---~~~~~~v~Fs~~~da~ra~~~l~~~~---~~~~~l~~~~~ 168 (216)
T KOG0106|consen 97 RTHFRLIVRNLSLR--VSWQDLKDHFRPAGEVTYVDA---RRNFAFVEFSEQEDAKRALEKLDGKK---LNGRRISVEKN 168 (216)
T ss_pred cccceeeeccchhh--hhHHHHhhhhcccCCCchhhh---hccccceeehhhhhhhhcchhccchh---hcCceeeeccc
Confidence 34567778888888 889999999999999954444 78999999999999999999999999 99999999554
Q ss_pred ec
Q 043011 98 VL 99 (133)
Q Consensus 98 ~~ 99 (133)
..
T Consensus 169 ~~ 170 (216)
T KOG0106|consen 169 SR 170 (216)
T ss_pred Cc
Confidence 43
No 96
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=98.29 E-value=2.4e-06 Score=71.62 Aligned_cols=80 Identities=25% Similarity=0.316 Sum_probs=66.8
Q ss_pred CCCCeEEEecc-CCCCCCC--------HHHHHHHhhcCCCeeEEEEcCCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCC
Q 043011 18 ERSPNLFVANC-GPAVGVS--------YEAIGSVFSAFGDVKGIYAADDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLA 88 (133)
Q Consensus 18 ~~~~~L~V~Nl-~~~~~vt--------e~~L~~~F~~fG~V~~v~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~ 88 (133)
.|+.++.+.|+ ++.. .| .+|+.+-+++||.|..|.+...+-|+.||.|.+.++|..|+.+|||.+ +.
T Consensus 441 i~t~C~lL~nMFdpst-ete~n~d~eI~edV~Eec~k~g~v~hi~vd~ns~g~VYvrc~s~~~A~~a~~alhgrW---F~ 516 (549)
T KOG0147|consen 441 IPTQCLLLSNMFDPST-ETEPNWDQEIREDVIEECGKHGKVCHIFVDKNSAGCVYVRCPSAEAAGTAVKALHGRW---FA 516 (549)
T ss_pred CccHHHHHhhcCCccc-ccCcchhhHHHHHHHHHHHhcCCeeEEEEccCCCceEEEecCcHHHHHHHHHHHhhhh---hc
Confidence 67899999997 2210 11 366778889999999999966666999999999999999999999999 99
Q ss_pred CeeEEEEeeecCC
Q 043011 89 NRFLHISYSVLED 101 (133)
Q Consensus 89 gr~l~V~~a~~~~ 101 (133)
||.|.+.|-....
T Consensus 517 gr~Ita~~~~~~~ 529 (549)
T KOG0147|consen 517 GRMITAKYLPLER 529 (549)
T ss_pred cceeEEEEeehhh
Confidence 9999999976554
No 97
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.25 E-value=5.6e-06 Score=56.18 Aligned_cols=59 Identities=25% Similarity=0.269 Sum_probs=39.4
Q ss_pred CeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEcCCCCCeEEEEECCHHHHHHHHHHhcCC
Q 043011 21 PNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAADDSGARVIVSYFDEGSAQAAFNSLHSR 82 (133)
Q Consensus 21 ~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~~~~kg~afV~f~~~~~A~~A~~~l~g~ 82 (133)
..|.+.+++.. ++.++|++.|++||+|.-|.+ .+...-|||.|.+.++|+.|+..+.-.
T Consensus 2 ~il~~~g~~~~--~~re~iK~~f~~~g~V~yVD~-~~G~~~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 2 CILKFSGLGEP--TSREDIKEAFSQFGEVAYVDF-SRGDTEGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp -EEEEEE--SS----HHHHHHHT-SS--EEEEE---TT-SEEEEEESS---HHHHHHHHHHT
T ss_pred eEEEEecCCCC--cCHHHHHHHHHhcCCcceEEe-cCCCCEEEEEECCcchHHHHHHHHHhc
Confidence 46889999999 999999999999999999988 344557999999999999999887544
No 98
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=98.23 E-value=1.5e-06 Score=73.58 Aligned_cols=83 Identities=19% Similarity=0.256 Sum_probs=73.3
Q ss_pred CCCCCCeEEEeccCCCCCCCHHHHHHHhhc-CCCeeEEEEcCCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCeeEEE
Q 043011 16 EDERSPNLFVANCGPAVGVSYEAIGSVFSA-FGDVKGIYAADDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRFLHI 94 (133)
Q Consensus 16 ~~~~~~~L~V~Nl~~~~~vte~~L~~~F~~-fG~V~~v~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~l~V 94 (133)
...++..|||.||-.- .|.-+|+++.++ .|.|.+.+| .+-|..|||.|.+.++|..-+.+|||..|+.-+++.|.+
T Consensus 440 R~~~SnvlhI~nLvRP--FTlgQLkelL~rtgg~Vee~Wm-DkIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~a 516 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRP--FTLGQLKELLGRTGGNVEEFWM-DKIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIA 516 (718)
T ss_pred CCCccceEeeeccccc--chHHHHHHHHhhccCchHHHHH-HHhhcceeEecccHHHHHHHHHHHhccccCCCCCceeEe
Confidence 4567899999999988 999999999995 456777755 778899999999999999999999999999999999999
Q ss_pred EeeecCC
Q 043011 95 SYSVLED 101 (133)
Q Consensus 95 ~~a~~~~ 101 (133)
+|....+
T Consensus 517 df~~~de 523 (718)
T KOG2416|consen 517 DFVRADE 523 (718)
T ss_pred eecchhH
Confidence 9987543
No 99
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=98.18 E-value=2.2e-06 Score=70.17 Aligned_cols=61 Identities=23% Similarity=0.312 Sum_probs=54.5
Q ss_pred CCCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEcCC------------------CCCeEEEEECCHHHHHHHHHHh
Q 043011 18 ERSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAADD------------------SGARVIVSYFDEGSAQAAFNSL 79 (133)
Q Consensus 18 ~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~~~------------------~kg~afV~f~~~~~A~~A~~~l 79 (133)
-++++|.+.||+.+ -..+.|.+||+.+|.|++|+++.. .+-+|+|+|+..+.|.+|.+.|
T Consensus 229 l~srtivaenLP~D--h~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~ 306 (484)
T KOG1855|consen 229 LPSRTIVAENLPLD--HSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELL 306 (484)
T ss_pred cccceEEEecCCcc--hHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhh
Confidence 48999999999999 999999999999999999998532 2567999999999999999988
Q ss_pred c
Q 043011 80 H 80 (133)
Q Consensus 80 ~ 80 (133)
+
T Consensus 307 ~ 307 (484)
T KOG1855|consen 307 N 307 (484)
T ss_pred c
Confidence 4
No 100
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.07 E-value=4e-06 Score=70.30 Aligned_cols=79 Identities=15% Similarity=0.306 Sum_probs=71.4
Q ss_pred CCCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEc-----CCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCeeE
Q 043011 18 ERSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAA-----DDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRFL 92 (133)
Q Consensus 18 ~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~-----~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~l 92 (133)
.....+||++|+.. +++.+++++.+.||+++...+. +.++||||-+|-+..-...|+..|||.. +.+++|
T Consensus 287 ~~~~ki~v~~lp~~--l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~---lgd~~l 361 (500)
T KOG0120|consen 287 DSPNKIFVGGLPLY--LTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQ---LGDKKL 361 (500)
T ss_pred cccchhhhccCcCc--cCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhh---hcCcee
Confidence 34578999999999 9999999999999999887652 4689999999999999999999999999 999999
Q ss_pred EEEeeecCC
Q 043011 93 HISYSVLED 101 (133)
Q Consensus 93 ~V~~a~~~~ 101 (133)
.|+.|....
T Consensus 362 vvq~A~~g~ 370 (500)
T KOG0120|consen 362 VVQRAIVGA 370 (500)
T ss_pred Eeehhhccc
Confidence 999998765
No 101
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.05 E-value=1.3e-05 Score=67.22 Aligned_cols=83 Identities=23% Similarity=0.272 Sum_probs=62.0
Q ss_pred CCCCCCCeEEEeccC-CCCCCCH-------HHHHHHhhcCCCeeEEEEcCC--------CCCeEEEEECCHHHHHHHHHH
Q 043011 15 GEDERSPNLFVANCG-PAVGVSY-------EAIGSVFSAFGDVKGIYAADD--------SGARVIVSYFDEGSAQAAFNS 78 (133)
Q Consensus 15 ~~~~~~~~L~V~Nl~-~~~~vte-------~~L~~~F~~fG~V~~v~~~~~--------~kg~afV~f~~~~~A~~A~~~ 78 (133)
....++..|.+.|+= ++.=.++ |+++.-+++||.|.+|.+... .-|..||+|.+.++|++|+.+
T Consensus 394 ~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~ 473 (500)
T KOG0120|consen 394 MAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEE 473 (500)
T ss_pred cCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHH
Confidence 345667777777641 1100122 334556899999999988532 568899999999999999999
Q ss_pred hcCCCCCCCCCeeEEEEeeecC
Q 043011 79 LHSRPCPDLANRFLHISYSVLE 100 (133)
Q Consensus 79 l~g~~~~~l~gr~l~V~~a~~~ 100 (133)
|+|.. +.||.+...|....
T Consensus 474 L~GrK---F~nRtVvtsYydeD 492 (500)
T KOG0120|consen 474 LTGRK---FANRTVVASYYDED 492 (500)
T ss_pred ccCce---eCCcEEEEEecCHH
Confidence 99999 99999999997543
No 102
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=98.04 E-value=1.9e-05 Score=47.13 Aligned_cols=52 Identities=23% Similarity=0.421 Sum_probs=42.8
Q ss_pred CeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEcCCCCCeEEEEECCHHHHHHHH
Q 043011 21 PNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAADDSGARVIVSYFDEGSAQAAF 76 (133)
Q Consensus 21 ~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~~~~kg~afV~f~~~~~A~~A~ 76 (133)
+.|-|.+.+++ .. +++.+.|.+||+|.++.+ .....+.+|.|.+..+|++|+
T Consensus 2 ~wI~V~Gf~~~--~~-~~vl~~F~~fGeI~~~~~-~~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPD--LA-EEVLEHFASFGEIVDIYV-PESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECch--HH-HHHHHHHHhcCCEEEEEc-CCCCcEEEEEECCHHHHHhhC
Confidence 56778888876 44 556678999999999998 456779999999999999984
No 103
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.03 E-value=2e-05 Score=63.09 Aligned_cols=81 Identities=16% Similarity=0.167 Sum_probs=64.8
Q ss_pred CCCCCeEEEeccC--CCCCCC-------HHHHHHHhhcCCCeeEEEEc-CCCCCeEEEEECCHHHHHHHHHHhcCCCCCC
Q 043011 17 DERSPNLFVANCG--PAVGVS-------YEAIGSVFSAFGDVKGIYAA-DDSGARVIVSYFDEGSAQAAFNSLHSRPCPD 86 (133)
Q Consensus 17 ~~~~~~L~V~Nl~--~~~~vt-------e~~L~~~F~~fG~V~~v~~~-~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~ 86 (133)
....++|.+.|+= .....+ .++|++-.++||.|.+|.+. ....|.+-|.|.+.++|..+++.|+|+.
T Consensus 262 ~r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d~hPdGvvtV~f~n~eeA~~ciq~m~GR~--- 338 (382)
T KOG1548|consen 262 ARADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYDRHPDGVVTVSFRNNEEADQCIQTMDGRW--- 338 (382)
T ss_pred ccCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEeccCCCceeEEEeCChHHHHHHHHHhcCee---
Confidence 3456899999971 110022 46677889999999999985 4578999999999999999999999999
Q ss_pred CCCeeEEEEeeecC
Q 043011 87 LANRFLHISYSVLE 100 (133)
Q Consensus 87 l~gr~l~V~~a~~~ 100 (133)
+.||+|..+..-.+
T Consensus 339 fdgRql~A~i~DG~ 352 (382)
T KOG1548|consen 339 FDGRQLTASIWDGK 352 (382)
T ss_pred ecceEEEEEEeCCc
Confidence 99999998765443
No 104
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.02 E-value=2.1e-06 Score=75.44 Aligned_cols=107 Identities=15% Similarity=0.136 Sum_probs=88.2
Q ss_pred CCCCCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEcC----CCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCee
Q 043011 16 EDERSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAAD----DSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRF 91 (133)
Q Consensus 16 ~~~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~~----~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~ 91 (133)
....++|||+|||+.. +++.+|+..|..+|.|.+|.+.. ....|+||.|.+...|-+|...+.+.. |..-.
T Consensus 368 D~~atrTLf~Gnl~~k--l~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~---I~~g~ 442 (975)
T KOG0112|consen 368 DFRATRTLFLGNLDSK--LTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPL---IGNGT 442 (975)
T ss_pred chhhhhhhhhcCcccc--hhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCc---cccCc
Confidence 4456899999999999 99999999999999999998832 235689999999999999999999998 87767
Q ss_pred EEEEeeecCCCCCCCCCcceeEeeecCCCCCchhhhhhhcc
Q 043011 92 LHISYSVLEDSPATRHITSSVPVSLVASELNIPGLHSCFMT 132 (133)
Q Consensus 92 l~V~~a~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~ 132 (133)
+++.+..++. ..+..+|++.+.+++...-|..-|.+
T Consensus 443 ~r~glG~~ks-----t~ttr~~sgglg~w~p~~~l~r~fd~ 478 (975)
T KOG0112|consen 443 HRIGLGQPKS-----TPTTRLQSGGLGPWSPVSRLNREFDR 478 (975)
T ss_pred cccccccccc-----ccceeeccCCCCCCChHHHHHHHhhc
Confidence 7777776533 22234999999999988888777754
No 105
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=98.01 E-value=3.1e-06 Score=65.18 Aligned_cols=58 Identities=24% Similarity=0.391 Sum_probs=50.4
Q ss_pred HHhh-cCCCeeEEEEcC----CCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCeeEEEEeeecCC
Q 043011 41 SVFS-AFGDVKGIYAAD----DSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRFLHISYSVLED 101 (133)
Q Consensus 41 ~~F~-~fG~V~~v~~~~----~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~l~V~~a~~~~ 101 (133)
..|+ +||+|+++.+.. .-.|-+||.|...++|++|++.|||.. +.|++|+.+++....
T Consensus 87 ~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw---~~G~pi~ae~~pvT~ 149 (260)
T KOG2202|consen 87 TELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRW---YNGRPIHAELSPVTD 149 (260)
T ss_pred HHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCcc---ccCCcceeeecCcCc
Confidence 3344 999999997743 357899999999999999999999999 999999999987665
No 106
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=97.99 E-value=7.3e-06 Score=64.62 Aligned_cols=79 Identities=18% Similarity=0.275 Sum_probs=68.8
Q ss_pred CCCCCeEE-EeccCCCCCCCHHHHHHHhhcCCCeeEEEEc-----CCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCe
Q 043011 17 DERSPNLF-VANCGPAVGVSYEAIGSVFSAFGDVKGIYAA-----DDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANR 90 (133)
Q Consensus 17 ~~~~~~L~-V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~-----~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr 90 (133)
..+..++| |+|++.+ +++++|+..|..+|.|..+++. ...+|||||.|.+..++..|+.. +... +.++
T Consensus 181 ~~~s~~~~~~~~~~f~--~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~---~~~~ 254 (285)
T KOG4210|consen 181 SGPSDTIFFVGELDFS--LTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRS---IGGR 254 (285)
T ss_pred cCccccceeecccccc--cchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCc---ccCc
Confidence 34455566 9999999 9999999999999999999984 34689999999999999999887 7777 9999
Q ss_pred eEEEEeeecCC
Q 043011 91 FLHISYSVLED 101 (133)
Q Consensus 91 ~l~V~~a~~~~ 101 (133)
++++.+..+..
T Consensus 255 ~~~~~~~~~~~ 265 (285)
T KOG4210|consen 255 PLRLEEDEPRP 265 (285)
T ss_pred ccccccCCCCc
Confidence 99999988775
No 107
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=97.97 E-value=0.0001 Score=59.94 Aligned_cols=113 Identities=13% Similarity=0.127 Sum_probs=90.6
Q ss_pred CCCCCCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEcCCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCeeEEE
Q 043011 15 GEDERSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAADDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRFLHI 94 (133)
Q Consensus 15 ~~~~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~l~V 94 (133)
....+++.+.|-.|... .++-+.|-.+|..||.|.+|+.++...|-|.|++-|..+.++|+..||+.. +.|.+|.|
T Consensus 282 ~g~~~g~VmMVyGLdh~-k~N~drlFNl~ClYGNV~rvkFmkTk~gtamVemgd~~aver~v~hLnn~~---lfG~kl~v 357 (494)
T KOG1456|consen 282 GGGAPGCVMMVYGLDHG-KMNCDRLFNLFCLYGNVERVKFMKTKPGTAMVEMGDAYAVERAVTHLNNIP---LFGGKLNV 357 (494)
T ss_pred CCCCCCcEEEEEecccc-ccchhhhhhhhhhcCceeeEEEeecccceeEEEcCcHHHHHHHHHHhccCc---cccceEEE
Confidence 35567889999999866 266788999999999999999988788999999999999999999999999 99999999
Q ss_pred EeeecCC--C--------------------------CC---C---CCCcceeEeeecCCCCCchhhhhhhc
Q 043011 95 SYSVLED--S--------------------------PA---T---RHITSSVPVSLVASELNIPGLHSCFM 131 (133)
Q Consensus 95 ~~a~~~~--~--------------------------~~---~---~~~~~~l~v~nl~~~~~~~~l~~~f~ 131 (133)
.+|+..- + ++ | +.....|-..|.|..++.+.|..||.
T Consensus 358 ~~SkQ~~v~~~~pflLpDgSpSfKdys~SkNnRFssp~qAsKNrIq~Ps~vLHffNaP~~vtEe~l~~i~n 428 (494)
T KOG1456|consen 358 CVSKQNFVSPVQPFLLPDGSPSFKDYSGSKNNRFSSPEQASKNRIQPPSNVLHFFNAPLGVTEEQLIGICN 428 (494)
T ss_pred eeccccccccCCceecCCCCcchhhcccccccccCChhHhhcccccCCcceeEEecCCCccCHHHHHHHhh
Confidence 8876431 0 00 1 22233466778888888888888875
No 108
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=97.91 E-value=5.1e-06 Score=68.24 Aligned_cols=98 Identities=20% Similarity=0.261 Sum_probs=76.6
Q ss_pred CeEEEeccCCCCCCCHHHHHHHhhcCCC-eeEEEEcCCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCeeEEEEeeec
Q 043011 21 PNLFVANCGPAVGVSYEAIGSVFSAFGD-VKGIYAADDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRFLHISYSVL 99 (133)
Q Consensus 21 ~~L~V~Nl~~~~~vte~~L~~~F~~fG~-V~~v~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~l~V~~a~~ 99 (133)
..||++||++. ++..+|..+|+.--- ...-++ -..||+||.+.|..-|.+|++.++|+. ++.|+++.|+++.+
T Consensus 2 nklyignL~p~--~~psdl~svfg~ak~~~~g~fl--~k~gyafvd~pdq~wa~kaie~~sgk~--elqGkr~e~~~sv~ 75 (584)
T KOG2193|consen 2 NKLYIGNLSPQ--VTPSDLESVFGDAKIPGSGQFL--VKSGYAFVDCPDQQWANKAIETLSGKV--ELQGKRQEVEHSVP 75 (584)
T ss_pred CcccccccCCC--CChHHHHHHhccccCCCCccee--eecceeeccCCchhhhhhhHHhhchhh--hhcCceeeccchhh
Confidence 47999999999 999999999976510 111111 157999999999999999999999986 58999999999988
Q ss_pred CCCCCCCCCcceeEeeecCCCCCchhhhhh
Q 043011 100 EDSPATRHITSSVPVSLVASELNIPGLHSC 129 (133)
Q Consensus 100 ~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~ 129 (133)
+.. ...+ +-+-|+++.+-|.-|+.|
T Consensus 76 kkq---rsrk--~Qirnippql~wevld~L 100 (584)
T KOG2193|consen 76 KKQ---RSRK--IQIRNIPPQLQWEVLDSL 100 (584)
T ss_pred HHH---Hhhh--hhHhcCCHHHHHHHHHHH
Confidence 862 1122 667788888888777765
No 109
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.85 E-value=4e-05 Score=67.59 Aligned_cols=80 Identities=20% Similarity=0.287 Sum_probs=72.8
Q ss_pred CCCCCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEcCCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCC--eeEE
Q 043011 16 EDERSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAADDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLAN--RFLH 93 (133)
Q Consensus 16 ~~~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~g--r~l~ 93 (133)
...+++.+|++.|++. +.-..|...|..||.|..|.+ .+...||||.|++...|+.|+..|.|.. ++| +.++
T Consensus 451 kst~ttr~~sgglg~w--~p~~~l~r~fd~fGpir~Idy-~hgq~yayi~yes~~~aq~a~~~~rgap---~G~P~~r~r 524 (975)
T KOG0112|consen 451 KSTPTTRLQSGGLGPW--SPVSRLNREFDRFGPIRIIDY-RHGQPYAYIQYESPPAAQAATHDMRGAP---LGGPPRRLR 524 (975)
T ss_pred ccccceeeccCCCCCC--ChHHHHHHHhhccCcceeeec-ccCCcceeeecccCccchhhHHHHhcCc---CCCCCcccc
Confidence 4567899999999999 999999999999999999998 6778899999999999999999999999 875 7899
Q ss_pred EEeeecCC
Q 043011 94 ISYSVLED 101 (133)
Q Consensus 94 V~~a~~~~ 101 (133)
|.|+.+..
T Consensus 525 vdla~~~~ 532 (975)
T KOG0112|consen 525 VDLASPPG 532 (975)
T ss_pred cccccCCC
Confidence 99997654
No 110
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.84 E-value=2.1e-05 Score=60.76 Aligned_cols=68 Identities=15% Similarity=0.325 Sum_probs=58.4
Q ss_pred CCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEcC-------------CCCCe----EEEEECCHHHHHHHHHHhcC
Q 043011 19 RSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAAD-------------DSGAR----VIVSYFDEGSAQAAFNSLHS 81 (133)
Q Consensus 19 ~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~~-------------~~kg~----afV~f~~~~~A~~A~~~l~g 81 (133)
.+..+|++|||+. ++-.-|++||++||+|-.|++.. .++.+ ++|+|.+...|......|||
T Consensus 73 k~GVvylS~IPp~--m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn 150 (278)
T KOG3152|consen 73 KTGVVYLSNIPPY--MDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNN 150 (278)
T ss_pred cceEEEeccCCCc--cCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCC
Confidence 4678999999999 99999999999999999999842 11111 57999999999999999999
Q ss_pred CCCCCCCCee
Q 043011 82 RPCPDLANRF 91 (133)
Q Consensus 82 ~~~~~l~gr~ 91 (133)
.. ++|++
T Consensus 151 ~~---Iggkk 157 (278)
T KOG3152|consen 151 TP---IGGKK 157 (278)
T ss_pred Cc---cCCCC
Confidence 99 99875
No 111
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.69 E-value=0.00017 Score=61.11 Aligned_cols=74 Identities=20% Similarity=0.279 Sum_probs=56.9
Q ss_pred CCCeEEEeccCCCCCCCHHH----HHHHhhcCCCeeEEEEc----CCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCC-C
Q 043011 19 RSPNLFVANCGPAVGVSYEA----IGSVFSAFGDVKGIYAA----DDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLA-N 89 (133)
Q Consensus 19 ~~~~L~V~Nl~~~~~vte~~----L~~~F~~fG~V~~v~~~----~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~-g 89 (133)
-...++|.|+|--....-+- |..+|+++|+|..+.++ +..+||.|++|.+.++|+.|++.|||+. ++ .
T Consensus 57 ~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~---ldkn 133 (698)
T KOG2314|consen 57 FDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKR---LDKN 133 (698)
T ss_pred cceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccce---eccc
Confidence 35788898887431122233 45799999999999885 4579999999999999999999999998 76 4
Q ss_pred eeEEEE
Q 043011 90 RFLHIS 95 (133)
Q Consensus 90 r~l~V~ 95 (133)
....|.
T Consensus 134 Htf~v~ 139 (698)
T KOG2314|consen 134 HTFFVR 139 (698)
T ss_pred ceEEee
Confidence 555553
No 112
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=97.52 E-value=0.00045 Score=59.96 Aligned_cols=71 Identities=18% Similarity=0.204 Sum_probs=60.7
Q ss_pred CeEEEeccCCCCCCCHHHHHHHhhcCCCe-eEEEEc----CCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCeeEEEE
Q 043011 21 PNLFVANCGPAVGVSYEAIGSVFSAFGDV-KGIYAA----DDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRFLHIS 95 (133)
Q Consensus 21 ~~L~V~Nl~~~~~vte~~L~~~F~~fG~V-~~v~~~----~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~l~V~ 95 (133)
+.|-+.|++.+ ++-+|+-++|.-|-.+ .+|.+. +...|-|.|.|++.++|..|...|+++. |..|.+.+.
T Consensus 868 ~V~~~~n~Pf~--v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~---i~nr~V~l~ 942 (944)
T KOG4307|consen 868 RVLSCNNFPFD--VTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQK---IRNRVVSLR 942 (944)
T ss_pred eEEEecCCCcc--ccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCc---ccceeEEEE
Confidence 37889999999 9999999999999765 345442 3467889999999999999999999999 999998876
Q ss_pred e
Q 043011 96 Y 96 (133)
Q Consensus 96 ~ 96 (133)
.
T Consensus 943 i 943 (944)
T KOG4307|consen 943 I 943 (944)
T ss_pred e
Confidence 3
No 113
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.49 E-value=0.00048 Score=49.28 Aligned_cols=80 Identities=20% Similarity=0.248 Sum_probs=53.4
Q ss_pred CCCCCCCeEEEeccCCCC---CCCHH----HHHHHhhcCCCeeEEEEcCCCCCeEEEEECCHHHHHHHHHHhcCCCCCCC
Q 043011 15 GEDERSPNLFVANCGPAV---GVSYE----AIGSVFSAFGDVKGIYAADDSGARVIVSYFDEGSAQAAFNSLHSRPCPDL 87 (133)
Q Consensus 15 ~~~~~~~~L~V~Nl~~~~---~vte~----~L~~~F~~fG~V~~v~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l 87 (133)
...+|..|+.|.=..+.. ..-++ +|-+.|.+||+|.=|++. .+.-+|+|.+-++|.+|+. ++|.. +
T Consensus 22 ~~GPpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv---~~~mwVTF~dg~sALaals-~dg~~---v 94 (146)
T PF08952_consen 22 SQGPPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFV---GDTMWVTFRDGQSALAALS-LDGIQ---V 94 (146)
T ss_dssp ----TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEE---TTCEEEEESSCHHHHHHHH-GCCSE---E
T ss_pred hcCCCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEe---CCeEEEEECccHHHHHHHc-cCCcE---E
Confidence 356788999997666220 02233 567889999999888773 3567999999999999886 89999 9
Q ss_pred CCeeEEEEeeecCC
Q 043011 88 ANRFLHISYSVLED 101 (133)
Q Consensus 88 ~gr~l~V~~a~~~~ 101 (133)
+|+.|+|+.-.|..
T Consensus 95 ~g~~l~i~LKtpdW 108 (146)
T PF08952_consen 95 NGRTLKIRLKTPDW 108 (146)
T ss_dssp TTEEEEEEE-----
T ss_pred CCEEEEEEeCCccH
Confidence 99999999877765
No 114
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=97.36 E-value=0.0012 Score=47.23 Aligned_cols=74 Identities=18% Similarity=0.269 Sum_probs=57.6
Q ss_pred CCCCCCeEEEeccCCCCCCC-HHHHH---HHhhcCCCeeEEEEcCCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCee
Q 043011 16 EDERSPNLFVANCGPAVGVS-YEAIG---SVFSAFGDVKGIYAADDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRF 91 (133)
Q Consensus 16 ~~~~~~~L~V~Nl~~~~~vt-e~~L~---~~F~~fG~V~~v~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~ 91 (133)
.++|-.||.|+=|..+ +. .+||+ .-.+.||+|++|...+ +--|.|.|.|..+|=+|+.+.+.. .-|.-
T Consensus 82 kepPMsTIVVRWlkkn--m~~~edl~sV~~~Ls~fGpI~SVT~cG--rqsavVvF~d~~SAC~Av~Af~s~----~pgtm 153 (166)
T PF15023_consen 82 KEPPMSTIVVRWLKKN--MQPTEDLKSVIQRLSVFGPIQSVTLCG--RQSAVVVFKDITSACKAVSAFQSR----APGTM 153 (166)
T ss_pred CCCCceeEEeehhhhc--CChHHHHHHHHHHHHhcCCcceeeecC--CceEEEEehhhHHHHHHHHhhcCC----CCCce
Confidence 4678899999877666 43 45555 5579999999999865 456999999999999999999874 35677
Q ss_pred EEEEee
Q 043011 92 LHISYS 97 (133)
Q Consensus 92 l~V~~a 97 (133)
++..|.
T Consensus 154 ~qCsWq 159 (166)
T PF15023_consen 154 FQCSWQ 159 (166)
T ss_pred EEeecc
Confidence 776664
No 115
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.32 E-value=0.00053 Score=55.17 Aligned_cols=80 Identities=19% Similarity=0.251 Sum_probs=68.3
Q ss_pred CCCCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEE--------E-----cCCCCCeEEEEECCHHHHHHHHHHhcCCC
Q 043011 17 DERSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIY--------A-----ADDSGARVIVSYFDEGSAQAAFNSLHSRP 83 (133)
Q Consensus 17 ~~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~--------~-----~~~~kg~afV~f~~~~~A~~A~~~l~g~~ 83 (133)
.....++||-+|+.. +++++|.+.|.++|.|..=+ + +.+.||-|.|+|.|...|+.|+..++++.
T Consensus 63 ~s~~~ti~v~g~~d~--~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkd 140 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDS--VCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKD 140 (351)
T ss_pred ccccccceeeccCcc--chHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccc
Confidence 445679999999999 99999999999999885422 1 24578999999999999999999999999
Q ss_pred CCCCCCeeEEEEeeecCC
Q 043011 84 CPDLANRFLHISYSVLED 101 (133)
Q Consensus 84 ~~~l~gr~l~V~~a~~~~ 101 (133)
+.+.+|.|..+..+.
T Consensus 141 ---f~gn~ikvs~a~~r~ 155 (351)
T KOG1995|consen 141 ---FCGNTIKVSLAERRT 155 (351)
T ss_pred ---ccCCCchhhhhhhcc
Confidence 999999888776554
No 116
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=97.29 E-value=2.9e-05 Score=68.07 Aligned_cols=61 Identities=23% Similarity=0.272 Sum_probs=53.3
Q ss_pred CeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEc-----CCCCCeEEEEECCHHHHHHHHHHhcCCC
Q 043011 21 PNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAA-----DDSGARVIVSYFDEGSAQAAFNSLHSRP 83 (133)
Q Consensus 21 ~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~-----~~~kg~afV~f~~~~~A~~A~~~l~g~~ 83 (133)
.++||+||+.. +.+++|...|+.||.+..+.+. ++-||+|||.|.+.++|.+|+...++..
T Consensus 668 ~~~fvsnl~~~--~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~ 733 (881)
T KOG0128|consen 668 IKIFVSNLSPK--MSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCF 733 (881)
T ss_pred HHHHHhhcchh--hcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhh
Confidence 57899999999 9999999999999988776542 4678999999999999999998777665
No 117
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.27 E-value=0.00072 Score=53.52 Aligned_cols=80 Identities=21% Similarity=0.259 Sum_probs=58.9
Q ss_pred CCCeEEEeccCCCCCCC---HHHHHHHhhcCCCeeEEEEcC------CCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCC
Q 043011 19 RSPNLFVANCGPAVGVS---YEAIGSVFSAFGDVKGIYAAD------DSGARVIVSYFDEGSAQAAFNSLHSRPCPDLAN 89 (133)
Q Consensus 19 ~~~~L~V~Nl~~~~~vt---e~~L~~~F~~fG~V~~v~~~~------~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~g 89 (133)
+++.|.+.|+--...++ ++++++-+++||.|..|.+.- +.---.||+|+..++|.+|+-.|||+- ++|
T Consensus 280 ptkvlllrnmVg~gevd~elede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRy---FGG 356 (378)
T KOG1996|consen 280 PTKVLLLRNMVGAGEVDEELEDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRY---FGG 356 (378)
T ss_pred chHHHHhhhhcCcccccHHHHHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCce---ecc
Confidence 44556666642111133 356788999999999887631 222347999999999999999999999 999
Q ss_pred eeEEEEeeecCC
Q 043011 90 RFLHISYSVLED 101 (133)
Q Consensus 90 r~l~V~~a~~~~ 101 (133)
|.+...|....+
T Consensus 357 r~v~A~Fyn~ek 368 (378)
T KOG1996|consen 357 RVVSACFYNLEK 368 (378)
T ss_pred eeeeheeccHHh
Confidence 999998875543
No 118
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.13 E-value=0.0019 Score=43.49 Aligned_cols=73 Identities=16% Similarity=0.222 Sum_probs=51.2
Q ss_pred CCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEE------------EcCCCCCeEEEEECCHHHHHHHHHHhcCCCCCCC
Q 043011 20 SPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIY------------AADDSGARVIVSYFDEGSAQAAFNSLHSRPCPDL 87 (133)
Q Consensus 20 ~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~------------~~~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l 87 (133)
...|.|-..|+. ..+.+-+.|++||+|.+.. -......+..|+|.+..+|++|+. -||+. +
T Consensus 6 ~~wVtVFGfp~~---~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i---~ 78 (100)
T PF05172_consen 6 ETWVTVFGFPPS---ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTI---F 78 (100)
T ss_dssp CCEEEEE---GG---GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEE---E
T ss_pred CeEEEEEccCHH---HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeE---E
Confidence 456777777765 4566788999999998775 113456788999999999999997 69999 8
Q ss_pred CCeeE-EEEeeec
Q 043011 88 ANRFL-HISYSVL 99 (133)
Q Consensus 88 ~gr~l-~V~~a~~ 99 (133)
.|..| -|.|..+
T Consensus 79 ~g~~mvGV~~~~~ 91 (100)
T PF05172_consen 79 SGSLMVGVKPCDP 91 (100)
T ss_dssp TTCEEEEEEE-HH
T ss_pred cCcEEEEEEEcHH
Confidence 88654 5777643
No 119
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=97.11 E-value=0.0014 Score=48.70 Aligned_cols=63 Identities=19% Similarity=0.221 Sum_probs=46.6
Q ss_pred CHHHHHHHhhcCCCeeEEEEcCCCCCeEEEEECCHHHHHHHHHHhc--CCCCCCCCCeeEEEEeeecCC
Q 043011 35 SYEAIGSVFSAFGDVKGIYAADDSGARVIVSYFDEGSAQAAFNSLH--SRPCPDLANRFLHISYSVLED 101 (133)
Q Consensus 35 te~~L~~~F~~fG~V~~v~~~~~~kg~afV~f~~~~~A~~A~~~l~--g~~~~~l~gr~l~V~~a~~~~ 101 (133)
..+.|+++|..|+++..+... ++=+-..|.|.+.++|+.|+..|+ +.. +.|..+++.|+.+..
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L-~sFrRi~v~f~~~~~A~~~r~~l~~~~~~---~~g~~l~~yf~~~~~ 72 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPL-KSFRRIRVVFESPESAQRARQLLHWDGTS---FNGKRLRVYFGQPTP 72 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEE-TTTTEEEEE-SSTTHHHHHHHTST--TSE---ETTEE-EEE----SS
T ss_pred hHHHHHHHHHhcCCceEEEEc-CCCCEEEEEeCCHHHHHHHHHHhcccccc---cCCCceEEEEccccc
Confidence 467899999999998888763 444568899999999999999999 888 999999999996554
No 120
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=97.06 E-value=0.0047 Score=39.00 Aligned_cols=68 Identities=18% Similarity=0.258 Sum_probs=43.0
Q ss_pred eEEEeccCCCCCCCHHHHHHHhhcCC-----CeeEEEEcCCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCeeEEEEe
Q 043011 22 NLFVANCGPAVGVSYEAIGSVFSAFG-----DVKGIYAADDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRFLHISY 96 (133)
Q Consensus 22 ~L~V~Nl~~~~~vte~~L~~~F~~fG-----~V~~v~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~l~V~~ 96 (133)
+||| |++...+++..+|-.++..-+ +|-+|.+ ...|+||+- ..+.|..+++.|++.. +.|+++.|+.
T Consensus 2 rl~i-n~Gr~dg~~~~~iv~~i~~~~gi~~~~IG~I~I---~~~~S~vev-~~~~a~~v~~~l~~~~---~~gk~v~ve~ 73 (74)
T PF03880_consen 2 RLFI-NVGRKDGLTPRDIVGAICNEAGIPGRDIGRIDI---FDNFSFVEV-PEEVAEKVLEALNGKK---IKGKKVRVER 73 (74)
T ss_dssp EEEE-S-SGGGT--HHHHHHHHHTCTTB-GGGEEEEEE----SS-EEEEE--TT-HHHHHHHHTT-----SSS----EEE
T ss_pred EEEE-EcccccCCCHHHHHHHHHhccCCCHHhEEEEEE---eeeEEEEEE-CHHHHHHHHHHhcCCC---CCCeeEEEEE
Confidence 4666 677667799999988887775 4667777 456899988 4568899999999999 9999999986
Q ss_pred e
Q 043011 97 S 97 (133)
Q Consensus 97 a 97 (133)
|
T Consensus 74 A 74 (74)
T PF03880_consen 74 A 74 (74)
T ss_dssp -
T ss_pred C
Confidence 4
No 121
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=96.93 E-value=0.005 Score=51.58 Aligned_cols=77 Identities=16% Similarity=0.193 Sum_probs=58.9
Q ss_pred CCCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeE-EEEc----CCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCeeE
Q 043011 18 ERSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKG-IYAA----DDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRFL 92 (133)
Q Consensus 18 ~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~-v~~~----~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~l 92 (133)
.+...|-++.||+. +|++||.++|+-.--|.. |.++ .+..|=|||+|++.++|++|+.. |... +.-|-|
T Consensus 101 ~~d~vVRLRGLPfs--cte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~r-hre~---iGhRYI 174 (510)
T KOG4211|consen 101 ANDGVVRLRGLPFS--CTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALGR-HREN---IGHRYI 174 (510)
T ss_pred CCCceEEecCCCcc--CcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHHH-HHHh---hccceE
Confidence 56778999999999 999999999998865554 4332 34678899999999999999974 3334 666777
Q ss_pred EEEeeecC
Q 043011 93 HISYSVLE 100 (133)
Q Consensus 93 ~V~~a~~~ 100 (133)
.|--|...
T Consensus 175 EvF~Ss~~ 182 (510)
T KOG4211|consen 175 EVFRSSRA 182 (510)
T ss_pred EeehhHHH
Confidence 77555433
No 122
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=96.90 E-value=0.0037 Score=52.56 Aligned_cols=70 Identities=16% Similarity=0.189 Sum_probs=56.0
Q ss_pred CCCCCCCCCCCCCCCeEEEeccCCCCCCCHHHHHHHhh-cCCCeeEEEEcCC-----CCCeEEEEECCHHHHHHHHHH
Q 043011 7 SRFRRPKAGEDERSPNLFVANCGPAVGVSYEAIGSVFS-AFGDVKGIYAADD-----SGARVIVSYFDEGSAQAAFNS 78 (133)
Q Consensus 7 ~~f~~p~~~~~~~~~~L~V~Nl~~~~~vte~~L~~~F~-~fG~V~~v~~~~~-----~kg~afV~f~~~~~A~~A~~~ 78 (133)
..|..-......|.+|+|||.|+.- ++.+||..+|+ -||.|.-+-+..+ .+|-+=|+|.+.++=.+||.+
T Consensus 357 s~fv~d~sq~lDprrTVFVGgvprp--l~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 357 SDFVLDHNQPIDPRRTVFVGGLPRP--LTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred chhhhccCcccCccceEEecCCCCc--chHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 3344433345678999999999999 99999999999 8999976655222 689999999999999898864
No 123
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=96.87 E-value=0.00063 Score=59.92 Aligned_cols=76 Identities=16% Similarity=0.093 Sum_probs=66.9
Q ss_pred CCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEc----CCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCeeEEEE
Q 043011 20 SPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAA----DDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRFLHIS 95 (133)
Q Consensus 20 ~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~----~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~l~V~ 95 (133)
...++|+|.++. .|.++|+.+++++|.+.++.+. ++.+|-|+|.|.+..+|..+....++.. +..+.+.|+
T Consensus 736 K~~v~i~g~pf~--gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~---~rE~~~~v~ 810 (881)
T KOG0128|consen 736 KISVAISGPPFQ--GTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVDVAG---KRENNGEVQ 810 (881)
T ss_pred hhhhheeCCCCC--CchHHHHhhccccCCccccchhhhhccccccceeccCCCcchhhhhcccchhhh---hhhcCcccc
Confidence 468999999999 9999999999999999988653 6789999999999999999999888888 888888888
Q ss_pred eeecC
Q 043011 96 YSVLE 100 (133)
Q Consensus 96 ~a~~~ 100 (133)
.+.|.
T Consensus 811 vsnp~ 815 (881)
T KOG0128|consen 811 VSNPE 815 (881)
T ss_pred ccCCc
Confidence 76653
No 124
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=96.74 E-value=0.0029 Score=51.81 Aligned_cols=71 Identities=18% Similarity=0.267 Sum_probs=56.7
Q ss_pred CCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEcC--------CCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCee
Q 043011 20 SPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAAD--------DSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRF 91 (133)
Q Consensus 20 ~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~~--------~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~ 91 (133)
...|.|.||.+. ++.++++.+|+-.|+|..+.+.+ -....|||.|.|.+.+..|.. |-++. +=++.
T Consensus 7 ~~vIqvanisps--at~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntv---fvdra 80 (479)
T KOG4676|consen 7 LGVIQVANISPS--ATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTV---FVDRA 80 (479)
T ss_pred CceeeecccCch--hhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccce---eeeee
Confidence 348999999999 99999999999999999998743 135679999999999888765 55555 55666
Q ss_pred EEEEe
Q 043011 92 LHISY 96 (133)
Q Consensus 92 l~V~~ 96 (133)
|.|-.
T Consensus 81 liv~p 85 (479)
T KOG4676|consen 81 LIVRP 85 (479)
T ss_pred EEEEe
Confidence 65543
No 125
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=96.72 E-value=0.0018 Score=52.49 Aligned_cols=68 Identities=7% Similarity=0.035 Sum_probs=54.5
Q ss_pred CCeEEEeccCCCCCCCHHHHHHHhhcCCC--eeEEEE-----cCCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCeeE
Q 043011 20 SPNLFVANCGPAVGVSYEAIGSVFSAFGD--VKGIYA-----ADDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRFL 92 (133)
Q Consensus 20 ~~~L~V~Nl~~~~~vte~~L~~~F~~fG~--V~~v~~-----~~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~l 92 (133)
.-++|||||-|. +|++||-+....-|- +.++++ .+.+||||.|..-+..+..+-++-|--+. +.|..=
T Consensus 80 k~~~YvGNL~W~--TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~---iHGQ~P 154 (498)
T KOG4849|consen 80 KYCCYVGNLLWY--TTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKT---IHGQSP 154 (498)
T ss_pred eEEEEecceeEE--eccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccce---ecCCCC
Confidence 458999999999 999999988887772 444443 25689999999999988888888887777 777543
No 126
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=96.67 E-value=0.0014 Score=58.04 Aligned_cols=81 Identities=15% Similarity=0.244 Sum_probs=62.4
Q ss_pred CCCeEEEeccCCCC----------CCCHHHHHHHhhcCCCeeEEEEcCCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCC
Q 043011 19 RSPNLFVANCGPAV----------GVSYEAIGSVFSAFGDVKGIYAADDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLA 88 (133)
Q Consensus 19 ~~~~L~V~Nl~~~~----------~vte~~L~~~F~~fG~V~~v~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~ 88 (133)
|+.++-+.|+-+.+ +.+..-|..+|++||.|.+.+.. +.-..|.|+|...+.|..|.++|+|++. ..-
T Consensus 285 ptn~isisnv~plqp~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtl-r~~N~alvs~~s~~sai~a~dAl~gkev-s~~ 362 (1007)
T KOG4574|consen 285 PTNTISISNVFPLQPKQSLENNAVNLTSSSLATLCSDYGSVASAWTL-RDLNMALVSFSSVESAILALDALQGKEV-SVT 362 (1007)
T ss_pred ccCcceecccccCcchhhhhcccccchHHHHHHHHHhhcchhhheec-ccccchhhhhHHHHHHHHhhhhhcCCcc-ccc
Confidence 44555555553331 26777889999999999999873 3445799999999999999999999982 234
Q ss_pred CeeEEEEeeecCC
Q 043011 89 NRFLHISYSVLED 101 (133)
Q Consensus 89 gr~l~V~~a~~~~ 101 (133)
|-+-+|.||++-+
T Consensus 363 g~Ps~V~~ak~~~ 375 (1007)
T KOG4574|consen 363 GAPSRVSFAKTLP 375 (1007)
T ss_pred CCceeEEeccccc
Confidence 7788999998765
No 127
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.67 E-value=0.023 Score=37.10 Aligned_cols=56 Identities=16% Similarity=0.268 Sum_probs=43.3
Q ss_pred CCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEcCCCCCeEEEEECCHHHHHHHHHHhcC
Q 043011 20 SPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAADDSGARVIVSYFDEGSAQAAFNSLHS 81 (133)
Q Consensus 20 ~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~~~~kg~afV~f~~~~~A~~A~~~l~g 81 (133)
.-..+|+ .|.. -...||.++|+.||.|.=-.+ +..-|||...+.+.|..|+..+.-
T Consensus 9 dHVFhlt-FPke--WK~~DI~qlFspfG~I~VsWi---~dTSAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 9 DHVFHLT-FPKE--WKTSDIYQLFSPFGQIYVSWI---NDTSAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp CCEEEEE---TT----HHHHHHHCCCCCCEEEEEE---CTTEEEEEECCCHHHHHHHHHHTT
T ss_pred ceEEEEe-CchH--hhhhhHHHHhccCCcEEEEEE---cCCcEEEEeecHHHHHHHHHHhcc
Confidence 3456666 8888 889999999999999976666 445799999999999999998863
No 128
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=96.51 E-value=0.00078 Score=53.85 Aligned_cols=76 Identities=18% Similarity=0.298 Sum_probs=59.6
Q ss_pred CeEEEeccCCCCCCCHHH-HH--HHhhcCCCeeEEEEcCCC------CC--eEEEEECCHHHHHHHHHHhcCCCCCCCCC
Q 043011 21 PNLFVANCGPAVGVSYEA-IG--SVFSAFGDVKGIYAADDS------GA--RVIVSYFDEGSAQAAFNSLHSRPCPDLAN 89 (133)
Q Consensus 21 ~~L~V~Nl~~~~~vte~~-L~--~~F~~fG~V~~v~~~~~~------kg--~afV~f~~~~~A~~A~~~l~g~~~~~l~g 89 (133)
.-+||-.|++. +.+++ |+ +.|++||.|.+|.+..+. .+ -++|+|...++|..||+..+|.. ++|
T Consensus 78 nlvyvvgl~~~--~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~---~dg 152 (327)
T KOG2068|consen 78 NLVYVVGLPLD--LADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFV---DDG 152 (327)
T ss_pred hhhhhhCCCcc--ccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHH---hhh
Confidence 45677778877 55444 43 689999999999885322 11 26999999999999999999999 999
Q ss_pred eeEEEEeeecCC
Q 043011 90 RFLHISYSVLED 101 (133)
Q Consensus 90 r~l~V~~a~~~~ 101 (133)
+.++..+...+.
T Consensus 153 ~~lka~~gttky 164 (327)
T KOG2068|consen 153 RALKASLGTTKY 164 (327)
T ss_pred hhhHHhhCCCcc
Confidence 998888877664
No 129
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=96.48 E-value=0.007 Score=49.63 Aligned_cols=76 Identities=12% Similarity=0.201 Sum_probs=62.2
Q ss_pred CCCCeEEEeccCCCCCCCHHHHHHHhhcCCC-e--eEEEEc----CCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCe
Q 043011 18 ERSPNLFVANCGPAVGVSYEAIGSVFSAFGD-V--KGIYAA----DDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANR 90 (133)
Q Consensus 18 ~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~-V--~~v~~~----~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr 90 (133)
.+..+|-++.|+.. .+-|+|-++|+.|.. | ..|++. ++..|-|||+|.+.++|..|....|.+. .++|
T Consensus 278 ~~kdcvRLRGLPy~--AtvEdIL~FlgdFa~~i~f~gVHmv~N~qGrPSGeAFIqm~nae~a~aaaqk~hk~~---mk~R 352 (508)
T KOG1365|consen 278 RSKDCVRLRGLPYE--ATVEDILDFLGDFATDIRFQGVHMVLNGQGRPSGEAFIQMRNAERARAAAQKCHKKL---MKSR 352 (508)
T ss_pred CCCCeeEecCCChh--hhHHHHHHHHHHHhhhcccceeEEEEcCCCCcChhhhhhhhhhHHHHHHHHHHHHhh---cccc
Confidence 34779999999999 999999999999974 3 336653 4567899999999999999999988887 6688
Q ss_pred eEEEEeee
Q 043011 91 FLHISYSV 98 (133)
Q Consensus 91 ~l~V~~a~ 98 (133)
.|.|--+.
T Consensus 353 YiEvfp~S 360 (508)
T KOG1365|consen 353 YIEVFPCS 360 (508)
T ss_pred eEEEeecc
Confidence 88775443
No 130
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.41 E-value=0.026 Score=34.76 Aligned_cols=53 Identities=26% Similarity=0.332 Sum_probs=42.0
Q ss_pred CeEEEeccCCCCCCCHHHHHHHhhcC----CCeeEEEEcCCCCCeEEEEECCHHHHHHHHHHh
Q 043011 21 PNLFVANCGPAVGVSYEAIGSVFSAF----GDVKGIYAADDSGARVIVSYFDEGSAQAAFNSL 79 (133)
Q Consensus 21 ~~L~V~Nl~~~~~vte~~L~~~F~~f----G~V~~v~~~~~~kg~afV~f~~~~~A~~A~~~l 79 (133)
..|+|.+++. ++.+|++..|..| + ...|....+. -|-|.|.+.+.|.+|+.+|
T Consensus 6 eavhirGvd~---lsT~dI~~y~~~y~~~~~-~~~IEWIdDt--ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVDE---LSTDDIKAYFSEYFDEEG-PFRIEWIDDT--SCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCCC---CCHHHHHHHHHHhcccCC-CceEEEecCC--cEEEEECCHHHHHHHHHcC
Confidence 5789999864 8899999999999 4 3456554433 4789999999999999865
No 131
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=96.37 E-value=0.0051 Score=47.76 Aligned_cols=60 Identities=20% Similarity=0.273 Sum_probs=50.7
Q ss_pred CCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEc----CCCCCeEEEEECCHHHHHHHHHHhc
Q 043011 19 RSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAA----DDSGARVIVSYFDEGSAQAAFNSLH 80 (133)
Q Consensus 19 ~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~----~~~kg~afV~f~~~~~A~~A~~~l~ 80 (133)
....|||.||... ++.|.|.+.|+.||+|....+. .+..+-.+|.|...-.|.+|...++
T Consensus 30 ~~a~l~V~nl~~~--~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~ 93 (275)
T KOG0115|consen 30 MHAELYVVNLMQG--ASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCR 93 (275)
T ss_pred ccceEEEEecchh--hhhHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhc
Confidence 3489999999999 9999999999999999775542 3455667999999999999998874
No 132
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=96.30 E-value=0.0078 Score=44.30 Aligned_cols=81 Identities=7% Similarity=0.058 Sum_probs=52.0
Q ss_pred CCCeEEEeccCCCCCCCHHHHHHHhhc-CCCe---eEEE--Ec-----CCCCCeEEEEECCHHHHHHHHHHhcCCCCCCC
Q 043011 19 RSPNLFVANCGPAVGVSYEAIGSVFSA-FGDV---KGIY--AA-----DDSGARVIVSYFDEGSAQAAFNSLHSRPCPDL 87 (133)
Q Consensus 19 ~~~~L~V~Nl~~~~~vte~~L~~~F~~-fG~V---~~v~--~~-----~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l 87 (133)
...+|.|++||++ +|++++++..+. +++- ..+. .. ...-..|||.|.+.++...-.+.++|+...+=
T Consensus 6 ~~~KvVIR~LPP~--LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~ 83 (176)
T PF03467_consen 6 EGTKVVIRRLPPN--LTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDS 83 (176)
T ss_dssp ---EEEEEEE-TT--S-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-T
T ss_pred cCceEEEeCCCCC--CCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECC
Confidence 4569999999999 999999998887 7765 3332 11 11345699999999999999999999772221
Q ss_pred CC--eeEEEEeeecCC
Q 043011 88 AN--RFLHISYSVLED 101 (133)
Q Consensus 88 ~g--r~l~V~~a~~~~ 101 (133)
.| .+-.|+||.-+.
T Consensus 84 kg~~~~~~VE~Apyqk 99 (176)
T PF03467_consen 84 KGNEYPAVVEFAPYQK 99 (176)
T ss_dssp TS-EEEEEEEE-SS--
T ss_pred CCCCcceeEEEcchhc
Confidence 22 355788886554
No 133
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=96.06 E-value=0.01 Score=50.54 Aligned_cols=72 Identities=11% Similarity=0.165 Sum_probs=53.5
Q ss_pred CCCCeEEEeccCCCCCCCHHHHHHHhhc--CCCeeEEEEcCCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCeeEEE
Q 043011 18 ERSPNLFVANCGPAVGVSYEAIGSVFSA--FGDVKGIYAADDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRFLHI 94 (133)
Q Consensus 18 ~~~~~L~V~Nl~~~~~vte~~L~~~F~~--fG~V~~v~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~l~V 94 (133)
...+.+.++-|+.. +..|+++.||+. +-++.++... .+.+ =||+|++..||+.|+..|... +.++.|++|..
T Consensus 173 ~kRcIvilREIpet--tp~e~Vk~lf~~encPk~iscefa-~N~n-WyITfesd~DAQqAykylree-vk~fqgKpImA 246 (684)
T KOG2591|consen 173 HKRCIVILREIPET--TPIEVVKALFKGENCPKVISCEFA-HNDN-WYITFESDTDAQQAYKYLREE-VKTFQGKPIMA 246 (684)
T ss_pred cceeEEEEeecCCC--ChHHHHHHHhccCCCCCceeeeee-ecCc-eEEEeecchhHHHHHHHHHHH-HHhhcCcchhh
Confidence 34577888999999 999999999965 6678888763 2233 489999999999999887532 13356665543
No 134
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=96.02 E-value=0.24 Score=33.86 Aligned_cols=77 Identities=18% Similarity=0.225 Sum_probs=54.8
Q ss_pred CCCeEEEeccCCCCCCCHHHHHHHhhcCC-CeeEEEEcCC---CCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCeeEEE
Q 043011 19 RSPNLFVANCGPAVGVSYEAIGSVFSAFG-DVKGIYAADD---SGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRFLHI 94 (133)
Q Consensus 19 ~~~~L~V~Nl~~~~~vte~~L~~~F~~fG-~V~~v~~~~~---~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~l~V 94 (133)
.+..+.+...+.- ++.++|..+.+.+- .|..+++.++ ++=.+.+.|.+.++|..-....||+...++.....+|
T Consensus 12 ~~~~~~l~vp~~~--~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~FnslEpE~Chv 89 (110)
T PF07576_consen 12 RSTLCCLAVPPYM--TPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFNSLEPETCHV 89 (110)
T ss_pred CceEEEEEeCccc--ccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccCCCCCceeEE
Confidence 3445555555555 77778877777775 4667777544 3446889999999999999999999966666655665
Q ss_pred Eee
Q 043011 95 SYS 97 (133)
Q Consensus 95 ~~a 97 (133)
-|-
T Consensus 90 vfV 92 (110)
T PF07576_consen 90 VFV 92 (110)
T ss_pred EEE
Confidence 554
No 135
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=95.52 E-value=0.015 Score=45.93 Aligned_cols=107 Identities=14% Similarity=0.068 Sum_probs=76.6
Q ss_pred CCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEc-----CCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCeeEE
Q 043011 19 RSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAA-----DDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRFLH 93 (133)
Q Consensus 19 ~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~-----~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~l~ 93 (133)
...++|++++... +.+.+...++.++|.+....+. ..++|++++.|...+.+..|+....... +.++.+.
T Consensus 87 ~~~~~f~g~~s~~--~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~---~~~~~~~ 161 (285)
T KOG4210|consen 87 SSSTFFVGELSEN--IEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKV---LDGNKGE 161 (285)
T ss_pred ccccccccccccc--hhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccc---ccccccc
Confidence 4689999999999 9999899999999977665442 4579999999999999999998655555 5555554
Q ss_pred EEeeecCC--C-----CCCCCCcceeE-eeecCCCCCchhhhhhh
Q 043011 94 ISYSVLED--S-----PATRHITSSVP-VSLVASELNIPGLHSCF 130 (133)
Q Consensus 94 V~~a~~~~--~-----~~~~~~~~~l~-v~nl~~~~~~~~l~~~f 130 (133)
........ + +.......+++ |++++..++..++...|
T Consensus 162 ~dl~~~~~~~~~n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~ 206 (285)
T KOG4210|consen 162 KDLNTRRGLRPKNKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHF 206 (285)
T ss_pred CcccccccccccchhcccccCccccceeecccccccchHHHhhhc
Confidence 44333222 1 11222334455 99999999888876444
No 136
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=95.20 E-value=0.15 Score=40.80 Aligned_cols=65 Identities=17% Similarity=0.228 Sum_probs=49.3
Q ss_pred CCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEcCCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCeeE
Q 043011 20 SPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAADDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRFL 92 (133)
Q Consensus 20 ~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~l 92 (133)
...+-|-..++. .-.-|-.+|++||+|.+.... ..-.+-+|.|.+..+|++|+. -||+. |+|-.+
T Consensus 197 D~WVTVfGFppg---~~s~vL~~F~~cG~Vvkhv~~-~ngNwMhirYssr~~A~KALs-kng~i---i~g~vm 261 (350)
T KOG4285|consen 197 DTWVTVFGFPPG---QVSIVLNLFSRCGEVVKHVTP-SNGNWMHIRYSSRTHAQKALS-KNGTI---IDGDVM 261 (350)
T ss_pred cceEEEeccCcc---chhHHHHHHHhhCeeeeeecC-CCCceEEEEecchhHHHHhhh-hcCee---eccceE
Confidence 344555555554 345577899999999988774 555688999999999999997 58888 877544
No 137
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=95.15 E-value=0.025 Score=48.99 Aligned_cols=82 Identities=16% Similarity=0.058 Sum_probs=66.9
Q ss_pred CCCCCCCCCCCC---CCCCCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEcCCCCCeEEEEECCHHHHHHHHHHhc
Q 043011 4 PSNSRFRRPKAG---EDERSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAADDSGARVIVSYFDEGSAQAAFNSLH 80 (133)
Q Consensus 4 ~~~~~f~~p~~~---~~~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~~~~kg~afV~f~~~~~A~~A~~~l~ 80 (133)
++.| |.+|... ..++..++||+|+... +..+-++.+...+|-|.+..... |+|-.|.....+..|+..++
T Consensus 22 ~~~p-~~~p~qp~~~~~~~~~~vfv~~~~~~--~s~~~~~~il~~~g~v~s~kr~~----fgf~~f~~~~~~~ra~r~~t 94 (668)
T KOG2253|consen 22 NGVP-YVVPIQPVFQPLPPRDTVFVGNISYL--VSQEFWKSILAKSGFVPSWKRDK----FGFCEFLKHIGDLRASRLLT 94 (668)
T ss_pred CCcc-cccCCcccccCCCCCceeEecchhhh--hhHHHHHHHHhhCCcchhhhhhh----hcccchhhHHHHHHHHHHhc
Confidence 4445 6666633 4567899999999999 99999999999999998776522 89999999999999999998
Q ss_pred CCCCCCCCCeeEEEE
Q 043011 81 SRPCPDLANRFLHIS 95 (133)
Q Consensus 81 g~~~~~l~gr~l~V~ 95 (133)
-.. ++|..+.+.
T Consensus 95 ~~~---~~~~kl~~~ 106 (668)
T KOG2253|consen 95 ELN---IDDQKLIEN 106 (668)
T ss_pred ccC---CCcchhhcc
Confidence 888 888777554
No 138
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=94.76 E-value=0.28 Score=36.83 Aligned_cols=61 Identities=16% Similarity=0.198 Sum_probs=53.8
Q ss_pred CCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEcCCCCCeEEEEECCHHHHHHHHHHhcCCC
Q 043011 19 RSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAADDSGARVIVSYFDEGSAQAAFNSLHSRP 83 (133)
Q Consensus 19 ~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~ 83 (133)
..-.+.|+.||++ .+..|||+...+-|+|.-..+. ..|.+.|+|...++.+-|+..|+.+.
T Consensus 114 Se~RVvVsGLp~S--gSWQDLKDHmReaGdvCfadv~--rDg~GvV~~~r~eDMkYAvr~ld~~~ 174 (241)
T KOG0105|consen 114 SEYRVVVSGLPPS--GSWQDLKDHMREAGDVCFADVQ--RDGVGVVEYLRKEDMKYAVRKLDDQK 174 (241)
T ss_pred cceeEEEecCCCC--CchHHHHHHHHhhCCeeeeeee--cccceeeeeeehhhHHHHHHhhcccc
Confidence 3457899999999 9999999999999999777664 34688999999999999999999887
No 139
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=94.65 E-value=0.043 Score=48.16 Aligned_cols=78 Identities=12% Similarity=0.020 Sum_probs=62.5
Q ss_pred CCCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeE-EEEc----CCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCeeE
Q 043011 18 ERSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKG-IYAA----DDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRFL 92 (133)
Q Consensus 18 ~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~-v~~~----~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~l 92 (133)
.....|||..|+.. +++.++-+.|++--.|++ |.+. ++.++-|||.|...+++.+|...-+-+- .+-|.|
T Consensus 432 ~ag~~lyv~~lP~~--t~~~~~v~~f~~~~~Ved~I~lt~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y---~G~r~i 506 (944)
T KOG4307|consen 432 GAGGALYVFQLPVM--TPIVPPVNKFMGAAAVEDFIELTRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFY---PGHRII 506 (944)
T ss_pred CccceEEeccCCcc--ccccchhhhhhhhhhhhheeEeccCCcccccchhhheeccccccchhhhcccccc---cCceEE
Confidence 34689999999999 999999999998888877 7664 4567899999999999888887655555 667889
Q ss_pred EEEeeecC
Q 043011 93 HISYSVLE 100 (133)
Q Consensus 93 ~V~~a~~~ 100 (133)
+|+-...+
T Consensus 507 rv~si~~~ 514 (944)
T KOG4307|consen 507 RVDSIADY 514 (944)
T ss_pred EeechhhH
Confidence 98755443
No 140
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=94.26 E-value=0.31 Score=30.33 Aligned_cols=55 Identities=15% Similarity=0.206 Sum_probs=44.8
Q ss_pred CCCHHHHHHHhhcCCCeeEEEEcCCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCeeEEE
Q 043011 33 GVSYEAIGSVFSAFGDVKGIYAADDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRFLHI 94 (133)
Q Consensus 33 ~vte~~L~~~F~~fG~V~~v~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~l~V 94 (133)
+++-++++..+.+|+ ..+|.. +..|| ||.|.+.++|+++..+.||+. +.+..|..
T Consensus 11 ~~~v~d~K~~Lr~y~-~~~I~~--d~tGf-YIvF~~~~Ea~rC~~~~~~~~---~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYR-WDRIRD--DRTGF-YIVFNDSKEAERCFRAEDGTL---FFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCC-cceEEe--cCCEE-EEEECChHHHHHHHHhcCCCE---EEEEEEEe
Confidence 388999999999998 455654 34564 799999999999999999998 77776654
No 141
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=94.05 E-value=0.084 Score=41.17 Aligned_cols=51 Identities=18% Similarity=0.143 Sum_probs=44.5
Q ss_pred CHHHHHHHHHHhcCCCCCCCCCeeEEEEeeecCCCCCCCCCcceeEeeecCCCCCchhhhhhhc
Q 043011 68 DEGSAQAAFNSLHSRPCPDLANRFLHISYSVLEDSPATRHITSSVPVSLVASELNIPGLHSCFM 131 (133)
Q Consensus 68 ~~~~A~~A~~~l~g~~~~~l~gr~l~V~~a~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~ 131 (133)
...-|+.|..+|+++. ..|+.|+|.|+.++. |+|-|+.+-++...|++-|.
T Consensus 3 ~rt~ae~ak~eLd~~~---~~~~~lr~rfa~~a~----------l~V~nl~~~~sndll~~~f~ 53 (275)
T KOG0115|consen 3 PRTLAEIAKRELDGRF---PKGRSLRVRFAMHAE----------LYVVNLMQGASNDLLEQAFR 53 (275)
T ss_pred cccHHHHHHHhcCCCC---CCCCceEEEeeccce----------EEEEecchhhhhHHHHHhhh
Confidence 3456889999999999 999999999997643 99999999999999988775
No 142
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=93.51 E-value=0.05 Score=45.65 Aligned_cols=75 Identities=19% Similarity=0.305 Sum_probs=57.1
Q ss_pred CCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEcCCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCeeEEEEeeec
Q 043011 20 SPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAADDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRFLHISYSVL 99 (133)
Q Consensus 20 ~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~l~V~~a~~ 99 (133)
.+.|-+.-.+.. +-+-++|..-|.+||+|..|-+.. +.--|.|+|.+..+|-.|.. .++.. |++|.|+|-|-.+
T Consensus 372 hs~l~lek~~~g-lnt~a~ln~hfA~fG~i~n~qv~~-~~~~a~vTF~t~aeag~a~~-s~~av---lnnr~iKl~whnp 445 (526)
T KOG2135|consen 372 HSPLALEKSPFG-LNTIADLNPHFAQFGEIENIQVDY-SSLHAVVTFKTRAEAGEAYA-SHGAV---LNNRFIKLFWHNP 445 (526)
T ss_pred cchhhhhccCCC-CchHhhhhhhhhhcCccccccccC-chhhheeeeeccccccchhc-cccce---ecCceeEEEEecC
Confidence 344445445554 134688999999999999998843 34468999999999977764 57888 9999999999877
Q ss_pred C
Q 043011 100 E 100 (133)
Q Consensus 100 ~ 100 (133)
.
T Consensus 446 s 446 (526)
T KOG2135|consen 446 S 446 (526)
T ss_pred C
Confidence 3
No 143
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.43 E-value=0.53 Score=40.62 Aligned_cols=77 Identities=16% Similarity=0.181 Sum_probs=61.0
Q ss_pred CCCCCeEEEeccCCCCCCCHHHHHHHhhcC----CCeeEEEEc---------------CC--------------------
Q 043011 17 DERSPNLFVANCGPAVGVSYEAIGSVFSAF----GDVKGIYAA---------------DD-------------------- 57 (133)
Q Consensus 17 ~~~~~~L~V~Nl~~~~~vte~~L~~~F~~f----G~V~~v~~~---------------~~-------------------- 57 (133)
..++++|=|.|+.|+ .+..++|.-+|+.| |.|.+|.+. ++
T Consensus 171 ~~~T~RLAVvNMDWd-~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee 249 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWD-RVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEE 249 (650)
T ss_pred ccccceeeEeccccc-cccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhh
Confidence 567899999999998 48899999998887 588888762 11
Q ss_pred -----------------CCCeEEEEECCHHHHHHHHHHhcCCCCCCCCC--eeEEEEee
Q 043011 58 -----------------SGARVIVSYFDEGSAQAAFNSLHSRPCPDLAN--RFLHISYS 97 (133)
Q Consensus 58 -----------------~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~g--r~l~V~~a 97 (133)
..=||.|+|.+.+.|...+..++|.+ +.. -.|.++|-
T Consensus 250 ~~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~E---fEsS~~~~DLRFI 305 (650)
T KOG2318|consen 250 EEDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIE---FESSANKLDLRFI 305 (650)
T ss_pred hhhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcce---eccccceeeeeec
Confidence 01368899999999999999999999 764 45555553
No 144
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=92.72 E-value=0.23 Score=42.41 Aligned_cols=45 Identities=4% Similarity=0.163 Sum_probs=37.3
Q ss_pred CCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCe-eEEEEeeecCC
Q 043011 57 DSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANR-FLHISYSVLED 101 (133)
Q Consensus 57 ~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr-~l~V~~a~~~~ 101 (133)
.+.|||||.|.+.+++..+.++.||+.+.-+.+. ...+.||+-+.
T Consensus 429 cNvGYAFINm~sp~ai~~F~kAFnGk~W~~FnS~Kia~itYArIQG 474 (549)
T KOG4660|consen 429 CNVGYAFINMTSPEAIIRFYKAFNGKKWEKFNSEKIASITYARIQG 474 (549)
T ss_pred cccceeEEeecCHHHHHHHHHHHcCCchhhhcceeeeeeehhhhhc
Confidence 4689999999999999999999999997766654 44788887553
No 145
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=92.35 E-value=0.34 Score=38.53 Aligned_cols=85 Identities=20% Similarity=0.422 Sum_probs=63.4
Q ss_pred CCCCCCCCCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEcCCC------------CCeEEEEECCHHHHHHHHHH-
Q 043011 12 PKAGEDERSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAADDS------------GARVIVSYFDEGSAQAAFNS- 78 (133)
Q Consensus 12 p~~~~~~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~~~~------------kg~afV~f~~~~~A~~A~~~- 78 (133)
|++...-.+|.|...|+..+ ++-..+-.-|-+||+|++|++.... .--..+.|-+.+.+-.-+..
T Consensus 7 PkGdD~YrTRSLLfeNv~~s--idLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnv 84 (309)
T PF10567_consen 7 PKGDDEYRTRSLLFENVNNS--IDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNV 84 (309)
T ss_pred CCCCccceeHHHHHhhcccc--ccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHH
Confidence 55555667899999999999 9999999999999999999985332 34578999999988755432
Q ss_pred ---hcCCCCCCCCCeeEEEEeeec
Q 043011 79 ---LHSRPCPDLANRFLHISYSVL 99 (133)
Q Consensus 79 ---l~g~~~~~l~gr~l~V~~a~~ 99 (133)
|.... ..+....|.+.|..-
T Consensus 85 LQrLsEfK-~~L~S~~L~lsFV~l 107 (309)
T PF10567_consen 85 LQRLSEFK-TKLKSESLTLSFVSL 107 (309)
T ss_pred HHHHHHHH-HhcCCcceeEEEEEE
Confidence 22110 126777888888764
No 146
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=91.89 E-value=0.67 Score=38.37 Aligned_cols=56 Identities=14% Similarity=0.115 Sum_probs=43.0
Q ss_pred CeEEEeccCCCCCCCHHHHHHHhhcC----CCeeEEE-Ec---CCCCCeEEEEECCHHHHHHHHHH
Q 043011 21 PNLFVANCGPAVGVSYEAIGSVFSAF----GDVKGIY-AA---DDSGARVIVSYFDEGSAQAAFNS 78 (133)
Q Consensus 21 ~~L~V~Nl~~~~~vte~~L~~~F~~f----G~V~~v~-~~---~~~kg~afV~f~~~~~A~~A~~~ 78 (133)
-.+-.+.|+.+ +++.|+.++|.+- |..++|. +. ++..|-|||.|...++|+.|+..
T Consensus 162 vivRmRGLPfd--at~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~k 225 (508)
T KOG1365|consen 162 VIVRMRGLPFD--ATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALRK 225 (508)
T ss_pred eEEEecCCCCC--cchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHHH
Confidence 45667899999 9999999999743 2334443 32 45678999999999999999863
No 147
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=91.07 E-value=0.26 Score=36.64 Aligned_cols=78 Identities=17% Similarity=0.175 Sum_probs=58.8
Q ss_pred CCeEEEeccCCCCCCCHHH---HHHHhhcCCCeeEEEEcCCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCe-eEEEE
Q 043011 20 SPNLFVANCGPAVGVSYEA---IGSVFSAFGDVKGIYAADDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANR-FLHIS 95 (133)
Q Consensus 20 ~~~L~V~Nl~~~~~vte~~---L~~~F~~fG~V~~v~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr-~l~V~ 95 (133)
..++.++++...+-++.++ ...+|-+|-+.....+ -++.++.-|.|.+.+.|+.|...+++.. +.|+ .+..-
T Consensus 10 p~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~-lrsfrrvRi~f~~p~~a~~a~i~~~~~~---f~~~~~~k~y 85 (193)
T KOG4019|consen 10 PTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQL-LRSFRRVRINFSNPEAAADARIKLHSTS---FNGKNELKLY 85 (193)
T ss_pred cceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHH-HHhhceeEEeccChhHHHHHHHHhhhcc---cCCCceEEEE
Confidence 4567899998875444433 3567887776554444 3456677899999999999999999999 9988 88888
Q ss_pred eeecCC
Q 043011 96 YSVLED 101 (133)
Q Consensus 96 ~a~~~~ 101 (133)
|+.+..
T Consensus 86 faQ~~~ 91 (193)
T KOG4019|consen 86 FAQPGH 91 (193)
T ss_pred EccCCC
Confidence 887665
No 148
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=89.33 E-value=0.053 Score=44.64 Aligned_cols=61 Identities=20% Similarity=0.159 Sum_probs=51.4
Q ss_pred CCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEc-CCCCCeEEEEECCHHHHHHHHHHhcCCC
Q 043011 20 SPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAA-DDSGARVIVSYFDEGSAQAAFNSLHSRP 83 (133)
Q Consensus 20 ~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~-~~~kg~afV~f~~~~~A~~A~~~l~g~~ 83 (133)
.++++|++|... +..+++-+.|..||+|.-.++. +...-+|.+.|....+...|.. ++|++
T Consensus 151 rRt~~v~sl~~~--~~l~e~~e~f~r~Gev~ya~~ask~~s~~c~~sf~~qts~~halr-~~gre 212 (479)
T KOG4676|consen 151 RRTREVQSLISA--AILPESGESFERKGEVSYAHTASKSRSSSCSHSFRKQTSSKHALR-SHGRE 212 (479)
T ss_pred Hhhhhhhcchhh--hcchhhhhhhhhcchhhhhhhhccCCCcchhhhHhhhhhHHHHHH-hcchh
Confidence 489999999999 9999999999999999877764 4456788899988888877776 56776
No 149
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=87.33 E-value=0.015 Score=48.36 Aligned_cols=77 Identities=26% Similarity=0.421 Sum_probs=64.4
Q ss_pred CCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEc--CCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCeeEEEEe
Q 043011 19 RSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAA--DDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRFLHISY 96 (133)
Q Consensus 19 ~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~--~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~l~V~~ 96 (133)
.++.+-+.|+++. ...+.|..+..+||.++.+... .......-|+|...+.+..|+..|+|.. +....+.+.|
T Consensus 79 rsrk~Qirnippq--l~wevld~Ll~qyg~ve~~eqvnt~~etavvnvty~~~~~~~~ai~kl~g~Q---~en~~~k~~Y 153 (584)
T KOG2193|consen 79 RSRKIQIRNIPPQ--LQWEVLDSLLAQYGTVENCEQVNTDSETAVVNVTYSAQQQHRQAIHKLNGPQ---LENQHLKVGY 153 (584)
T ss_pred HhhhhhHhcCCHH--HHHHHHHHHHhccCCHhHhhhhccchHHHHHHHHHHHHHHHHHHHHhhcchH---hhhhhhhccc
Confidence 4678999999999 9999999999999999887642 2233344588999999999999999999 9999999988
Q ss_pred eecC
Q 043011 97 SVLE 100 (133)
Q Consensus 97 a~~~ 100 (133)
-...
T Consensus 154 iPde 157 (584)
T KOG2193|consen 154 IPDE 157 (584)
T ss_pred Cchh
Confidence 6544
No 150
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=87.19 E-value=2.9 Score=27.16 Aligned_cols=55 Identities=13% Similarity=0.090 Sum_probs=40.4
Q ss_pred eEEEeccCCCCCCCHHHHHHHhhc-CC-CeeEEEEcCC--CCCeEEEEECCHHHHHHHHHH
Q 043011 22 NLFVANCGPAVGVSYEAIGSVFSA-FG-DVKGIYAADD--SGARVIVSYFDEGSAQAAFNS 78 (133)
Q Consensus 22 ~L~V~Nl~~~~~vte~~L~~~F~~-fG-~V~~v~~~~~--~kg~afV~f~~~~~A~~A~~~ 78 (133)
+-|+-.++.. .+..++++.+++ || +|.+|..... ..--|||++..-.+|...-..
T Consensus 22 n~y~F~V~~~--anK~eIK~AvE~lf~VkV~~VnT~~~~~~~KKA~V~L~~g~~A~~va~k 80 (84)
T PRK14548 22 NKLTFIVDRR--ATKPDIKRAVEELFDVKVEKVNTLITPKGEKKAYVKLAEEYDAEEIASR 80 (84)
T ss_pred CEEEEEECCC--CCHHHHHHHHHHHhCCceEEEEeEEcCCCcEEEEEEeCCCCcHHHHHHh
Confidence 4566668888 999999999887 57 5777775432 333599999998888776443
No 151
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=86.48 E-value=0.27 Score=39.19 Aligned_cols=84 Identities=13% Similarity=0.188 Sum_probs=53.1
Q ss_pred CCCCeEEEeccCCCCC----------CCHHHHHHHhhcCCCeeEEEEc----------CC-----CCCe---------EE
Q 043011 18 ERSPNLFVANCGPAVG----------VSYEAIGSVFSAFGDVKGIYAA----------DD-----SGAR---------VI 63 (133)
Q Consensus 18 ~~~~~L~V~Nl~~~~~----------vte~~L~~~F~~fG~V~~v~~~----------~~-----~kg~---------af 63 (133)
+...|||+..||-.|- -+++-|+..|+.||+|..|.++ ++ .+|| ||
T Consensus 147 erpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeay 226 (445)
T KOG2891|consen 147 ERPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAY 226 (445)
T ss_pred CCCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHH
Confidence 3446788877763321 3567799999999999988763 12 2344 35
Q ss_pred EEECCHHHHHHHHHHhcCCCCC-CCCC----eeEEEEeeecCC
Q 043011 64 VSYFDEGSAQAAFNSLHSRPCP-DLAN----RFLHISYSVLED 101 (133)
Q Consensus 64 V~f~~~~~A~~A~~~l~g~~~~-~l~g----r~l~V~~a~~~~ 101 (133)
|+|...-.-..|+++|.|..+. -..| -.+.|+|.++..
T Consensus 227 vqfmeykgfa~amdalr~~k~akk~d~~ffqanvkvdfdrsrh 269 (445)
T KOG2891|consen 227 VQFMEYKGFAQAMDALRGMKLAKKGDDGFFQANVKVDFDRSRH 269 (445)
T ss_pred HHHHHHHhHHHHHHHHhcchHHhhcCCcccccccccccchhhh
Confidence 7776666777788888887611 0122 355666665543
No 152
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=86.05 E-value=3.9 Score=26.10 Aligned_cols=54 Identities=13% Similarity=0.091 Sum_probs=39.6
Q ss_pred eEEEeccCCCCCCCHHHHHHHhhc-CC-CeeEEEEcC--CCCCeEEEEECCHHHHHHHHH
Q 043011 22 NLFVANCGPAVGVSYEAIGSVFSA-FG-DVKGIYAAD--DSGARVIVSYFDEGSAQAAFN 77 (133)
Q Consensus 22 ~L~V~Nl~~~~~vte~~L~~~F~~-fG-~V~~v~~~~--~~kg~afV~f~~~~~A~~A~~ 77 (133)
+-|+-.++.+ .+..|+++.+++ || +|.+|.... ...--|||++..-++|...-.
T Consensus 15 n~y~F~V~~~--anK~eIK~avE~lf~VkV~~Vnt~~~~~~~KKA~VtL~~g~~a~~va~ 72 (77)
T TIGR03636 15 NKLTFIVDRK--ATKGDIKRAVEKLFDVKVEKVNTLITPRGEKKAYVKLAEEYAAEEIAS 72 (77)
T ss_pred CEEEEEECCC--CCHHHHHHHHHHHhCCceEEEEeEEcCCCceEEEEEECCCCcHHHHHH
Confidence 4567778899 999999998877 56 577776532 233359999988888776544
No 153
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=85.63 E-value=1.9 Score=27.72 Aligned_cols=34 Identities=18% Similarity=0.287 Sum_probs=25.6
Q ss_pred CeeEEEEcCCCCCeEEEEECCHHHHHHHHHHhcC
Q 043011 48 DVKGIYAADDSGARVIVSYFDEGSAQAAFNSLHS 81 (133)
Q Consensus 48 ~V~~v~~~~~~kg~afV~f~~~~~A~~A~~~l~g 81 (133)
.|.++...+.-+||-||+=.+..+...|++.+.+
T Consensus 33 ~I~Si~~~~~lkGyIyVEA~~~~~V~~ai~gi~~ 66 (84)
T PF03439_consen 33 NIYSIFAPDSLKGYIYVEAERESDVKEAIRGIRH 66 (84)
T ss_dssp ---EEEE-TTSTSEEEEEESSHHHHHHHHTT-TT
T ss_pred ceEEEEEeCCCceEEEEEeCCHHHHHHHHhcccc
Confidence 5888888888999999999999999998876543
No 154
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=84.00 E-value=0.94 Score=32.05 Aligned_cols=25 Identities=8% Similarity=0.147 Sum_probs=22.0
Q ss_pred CcceeEeeecCCCCCchhhhhhhcc
Q 043011 108 ITSSVPVSLVASELNIPGLHSCFMT 132 (133)
Q Consensus 108 ~~~~l~v~nl~~~~~~~~l~~~f~~ 132 (133)
...+|+|+||+..++..+|+++|..
T Consensus 33 ~~~~lfVgnL~~~~te~~L~~~F~~ 57 (144)
T PLN03134 33 MSTKLFIGGLSWGTDDASLRDAFAH 57 (144)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhc
Confidence 3456999999999999999999974
No 155
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=83.60 E-value=3.1 Score=27.27 Aligned_cols=66 Identities=17% Similarity=0.154 Sum_probs=44.8
Q ss_pred EEEEECCHHHHHHHHHHhcCCCCCCCCCeeEEEEeeecCCC------CCCCCCcceeEeeecCCCCCchhhhhh
Q 043011 62 VIVSYFDEGSAQAAFNSLHSRPCPDLANRFLHISYSVLEDS------PATRHITSSVPVSLVASELNIPGLHSC 129 (133)
Q Consensus 62 afV~f~~~~~A~~A~~~l~g~~~~~l~gr~l~V~~a~~~~~------~~~~~~~~~l~v~nl~~~~~~~~l~~~ 129 (133)
|.|+|.+..-|++-++.= +..-.+.++.+.|.-+..... -......+++.|.+||..++.+.|+..
T Consensus 1 AlITF~e~~VA~~i~~~~--~~~v~l~~~~~~V~v~P~~~~~~~k~qv~~~vs~rtVlvsgip~~l~ee~l~D~ 72 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKK--KHPVPLEDCCVRVKVSPVTLGHLQKFQVFSGVSKRTVLVSGIPDVLDEEELRDK 72 (88)
T ss_pred CEEEeCcHHHHHHHHhCC--EEEEEECCEEEEEEEEeEecCCceEEEEEEcccCCEEEEeCCCCCCChhhheee
Confidence 689999999998877532 211136677777765544331 123556678999999998888887753
No 156
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=82.49 E-value=1.8 Score=34.06 Aligned_cols=35 Identities=26% Similarity=0.231 Sum_probs=27.7
Q ss_pred EEEEECCHHHHHHHHHHhcCCCCCCCCCeeEEEEeeecCC
Q 043011 62 VIVSYFDEGSAQAAFNSLHSRPCPDLANRFLHISYSVLED 101 (133)
Q Consensus 62 afV~f~~~~~A~~A~~~l~g~~~~~l~gr~l~V~~a~~~~ 101 (133)
|||+|.+.++|+.|.+.+.... ++.++++.|...+
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~-----~~~~~v~~APeP~ 35 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR-----PNSWRVSPAPEPD 35 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC-----CCCceEeeCCCcc
Confidence 7999999999999999877665 5666777765443
No 157
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=80.89 E-value=11 Score=31.88 Aligned_cols=69 Identities=13% Similarity=0.221 Sum_probs=55.6
Q ss_pred CCCeEEEeccCCCCCCCHHHHHHHhhcCC-CeeEEEEcCC---CCCeEEEEECCHHHHHHHHHHhcCCCCCCCCC
Q 043011 19 RSPNLFVANCGPAVGVSYEAIGSVFSAFG-DVKGIYAADD---SGARVIVSYFDEGSAQAAFNSLHSRPCPDLAN 89 (133)
Q Consensus 19 ~~~~L~V~Nl~~~~~vte~~L~~~F~~fG-~V~~v~~~~~---~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~g 89 (133)
++..|.|=-+|.. ++-.||-.+...+- .|.+|++.++ ++=.+.|.|.+.++|..-+..+||+...++..
T Consensus 73 ~~~mLcilaVP~~--mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~le~ 145 (493)
T KOG0804|consen 73 SSTMLCILAVPAY--MTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFNSLEP 145 (493)
T ss_pred CCcEEEEEecccc--ccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCCCCCc
Confidence 3788899889999 99999998888775 4777777543 34457899999999999999999999555554
No 158
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=77.19 E-value=5.1 Score=32.11 Aligned_cols=50 Identities=6% Similarity=0.036 Sum_probs=39.8
Q ss_pred CCeEEEeccCCCCCCCHHHHHHHhhcCCCe-eEEEEcCCCCCeEEEEECCHHHH
Q 043011 20 SPNLFVANCGPAVGVSYEAIGSVFSAFGDV-KGIYAADDSGARVIVSYFDEGSA 72 (133)
Q Consensus 20 ~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V-~~v~~~~~~kg~afV~f~~~~~A 72 (133)
..-++++||+.+ +.-.||+....+-|-+ -++.. ....|-||..|-+...+
T Consensus 330 ~~di~~~nl~rd--~rv~dlk~~lr~~~~~pm~isw-kg~~~k~flh~~~~~~~ 380 (396)
T KOG4410|consen 330 KTDIKLTNLSRD--IRVKDLKSELRKRECTPMSISW-KGHFGKCFLHFGNRKGV 380 (396)
T ss_pred ccceeeccCccc--cchHHHHHHHHhcCCCceeEee-ecCCcceeEecCCccCC
Confidence 456999999999 9999999998888754 46666 44678899999876543
No 159
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=76.83 E-value=5.1 Score=24.59 Aligned_cols=18 Identities=28% Similarity=0.624 Sum_probs=16.1
Q ss_pred HHHHHHhhcCCCeeEEEE
Q 043011 37 EAIGSVFSAFGDVKGIYA 54 (133)
Q Consensus 37 ~~L~~~F~~fG~V~~v~~ 54 (133)
.+||+.|++.|+|.-+.+
T Consensus 9 ~~iR~~fs~lG~I~vLYv 26 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYV 26 (62)
T ss_pred HHHHHHHHhcCcEEEEEE
Confidence 578999999999998876
No 160
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=71.96 E-value=17 Score=26.04 Aligned_cols=53 Identities=9% Similarity=0.062 Sum_probs=37.5
Q ss_pred CeEEEeccCCCCCCCHHHHHHHhhc-CC-CeeEEEEcCCCCC--eEEEEECCHHHHHHH
Q 043011 21 PNLFVANCGPAVGVSYEAIGSVFSA-FG-DVKGIYAADDSGA--RVIVSYFDEGSAQAA 75 (133)
Q Consensus 21 ~~L~V~Nl~~~~~vte~~L~~~F~~-fG-~V~~v~~~~~~kg--~afV~f~~~~~A~~A 75 (133)
.+-|+-.++.. .+..++++.+++ || +|.+|.......| -|||.+..-.+|...
T Consensus 82 ~N~yvF~Vd~k--AnK~qIK~AVEklf~VkV~kVNTli~p~g~KKA~V~L~~~~~aidv 138 (145)
T PTZ00191 82 NNTLVFIVDQR--ANKTQIKKAVEKLYDVKVVKVNTLITPDGLKKAYIRLSPDVDALDV 138 (145)
T ss_pred CCEEEEEEcCC--CCHHHHHHHHHHHhCCeeEEEEeEEcCCCceEEEEEECCCCcHHHH
Confidence 35666678888 999999999887 66 4677765333334 599999777666543
No 161
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=65.11 E-value=28 Score=29.37 Aligned_cols=77 Identities=16% Similarity=0.232 Sum_probs=57.1
Q ss_pred CCCCCeEEEeccCCCCCCCHHHHHHHhhcC----CCeeEEEEc---------------CC--------------------
Q 043011 17 DERSPNLFVANCGPAVGVSYEAIGSVFSAF----GDVKGIYAA---------------DD-------------------- 57 (133)
Q Consensus 17 ~~~~~~L~V~Nl~~~~~vte~~L~~~F~~f----G~V~~v~~~---------------~~-------------------- 57 (133)
..++.+|-|-|++|+ .+...+|-.+|+.| |.+..|.+. ++
T Consensus 143 G~~tkrLAvVnmDWd-~v~a~DLf~~fsSf~P~ggkl~kV~iypsefGkeRm~~e~vqGpprdif~~~d~~~ssqk~~~d 221 (622)
T COG5638 143 GNPTKRLAVVNMDWD-RVDAKDLFKIFSSFLPYGGKLSKVKIYPSEFGKERMAAEHVQGPPRDIFTPADNQPSSQKFGDD 221 (622)
T ss_pred CCcccceeEeecccc-cchHHHHHHHHHhhCCCCCccceeEechhhhhHHHHhHhhccCCchhhccccccCcchhccCCc
Confidence 457889999999987 48889999888877 567766541 00
Q ss_pred ----------------CCC-------------------eEEEEECCHHHHHHHHHHhcCCCCCCCCC--eeEEEEee
Q 043011 58 ----------------SGA-------------------RVIVSYFDEGSAQAAFNSLHSRPCPDLAN--RFLHISYS 97 (133)
Q Consensus 58 ----------------~kg-------------------~afV~f~~~~~A~~A~~~l~g~~~~~l~g--r~l~V~~a 97 (133)
.+| ||.|++.+.+.+...+.+.+|.+ +.. ..+.++|-
T Consensus 222 n~~sd~d~g~d~~~Egd~g~e~d~~~lrqyqlerlryYyAvvec~d~~tsK~iY~~CDG~E---ye~san~~DLRfv 295 (622)
T COG5638 222 NVFSDRDAGEDALIEGDRGNEFDMVKLRQYQLERLRYYYAVVECEDIETSKNIYSACDGVE---YENSANVLDLRFV 295 (622)
T ss_pred cchhhhhcchhhhhhcccccchhHHHHHHHHhhhheeEEEEEEeccchhhHHHHhccCccc---cccccceeeeeec
Confidence 012 68899999999999999999998 664 34455553
No 162
>PRK08559 nusG transcription antitermination protein NusG; Validated
Probab=64.90 E-value=25 Score=25.03 Aligned_cols=34 Identities=18% Similarity=0.239 Sum_probs=28.7
Q ss_pred eeEEEEcCCCCCeEEEEECCHHHHHHHHHHhcCC
Q 043011 49 VKGIYAADDSGARVIVSYFDEGSAQAAFNSLHSR 82 (133)
Q Consensus 49 V~~v~~~~~~kg~afV~f~~~~~A~~A~~~l~g~ 82 (133)
|.++.++..-.||.||+....+++..+++.+.|.
T Consensus 36 i~~i~vp~~fpGYVfVe~~~~~~~~~~i~~v~~v 69 (153)
T PRK08559 36 IYAILAPPELKGYVLVEAESKGAVEEAIRGIPHV 69 (153)
T ss_pred EEEEEccCCCCcEEEEEEEChHHHHHHHhcCCCE
Confidence 7788887778999999999888888888877653
No 163
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=64.66 E-value=15 Score=24.06 Aligned_cols=25 Identities=8% Similarity=0.097 Sum_probs=21.1
Q ss_pred CCCCCCeEEEeccCCCCCCCHHHHHHH
Q 043011 16 EDERSPNLFVANCGPAVGVSYEAIGSV 42 (133)
Q Consensus 16 ~~~~~~~L~V~Nl~~~~~vte~~L~~~ 42 (133)
.....+++.|+||+.. +++|+|++.
T Consensus 48 ~~vs~rtVlvsgip~~--l~ee~l~D~ 72 (88)
T PF07292_consen 48 SGVSKRTVLVSGIPDV--LDEEELRDK 72 (88)
T ss_pred EcccCCEEEEeCCCCC--CChhhheee
Confidence 3456899999999998 999999854
No 164
>TIGR00110 ilvD dihydroxy-acid dehydratase. This model generates scores of up to 150 bits vs. 6-phosphogluconate dehydratase, a homologous enzyme.
Probab=61.14 E-value=32 Score=29.78 Aligned_cols=61 Identities=16% Similarity=0.149 Sum_probs=44.5
Q ss_pred CCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEc----CCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCeeEEEE
Q 043011 20 SPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAA----DDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRFLHIS 95 (133)
Q Consensus 20 ~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~----~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~l~V~ 95 (133)
.-.+.=|||.++ |.|.++--. ...+|-| +.|++.++|..|+.. |.. -.|..+.|+
T Consensus 355 gl~iL~GNLaP~---------------GaViK~sa~~~~~~~~~G~A-~VF~see~a~~ai~~--g~i---~~gdVvViR 413 (535)
T TIGR00110 355 GLAILKGNLAPN---------------GAVVKIAGVDEDMTKFEGPA-KVFESEEEALEAILG--GKI---KEGDVVVIR 413 (535)
T ss_pred CEEEEecCCCcC---------------CeEEEecccCCcccEEEEeE-EEECCHHHHHHHHhc--CCC---CCCeEEEEe
Confidence 446666888887 666554321 1245666 569999999999975 666 669999999
Q ss_pred eeecCC
Q 043011 96 YSVLED 101 (133)
Q Consensus 96 ~a~~~~ 101 (133)
|.-|+-
T Consensus 414 yeGPkG 419 (535)
T TIGR00110 414 YEGPKG 419 (535)
T ss_pred CCCCCC
Confidence 999884
No 165
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=59.95 E-value=4.7 Score=28.67 Aligned_cols=23 Identities=13% Similarity=0.024 Sum_probs=20.8
Q ss_pred cceeEeeecCCCCCchhhhhhhc
Q 043011 109 TSSVPVSLVASELNIPGLHSCFM 131 (133)
Q Consensus 109 ~~~l~v~nl~~~~~~~~l~~~f~ 131 (133)
..||+||||+..++.+-+.+||.
T Consensus 36 S~tvyVgNlSfyttEEqiyELFs 58 (153)
T KOG0121|consen 36 SCTVYVGNLSFYTTEEQIYELFS 58 (153)
T ss_pred cceEEEeeeeeeecHHHHHHHHH
Confidence 35799999999999999999995
No 166
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=59.86 E-value=7.1 Score=21.35 Aligned_cols=15 Identities=13% Similarity=0.297 Sum_probs=10.1
Q ss_pred CCHHHHHHHhhcCCC
Q 043011 34 VSYEAIGSVFSAFGD 48 (133)
Q Consensus 34 vte~~L~~~F~~fG~ 48 (133)
+++++|+++|.+.+.
T Consensus 21 td~~~Lk~vF~~i~~ 35 (36)
T PF11411_consen 21 TDEDQLKEVFNRIKK 35 (36)
T ss_dssp --HHHHHHHHHCS--
T ss_pred CCHHHHHHHHHHhcc
Confidence 889999999988653
No 167
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=59.17 E-value=39 Score=20.61 Aligned_cols=43 Identities=19% Similarity=0.244 Sum_probs=32.1
Q ss_pred HHHHHHhhcCCCeeEEEEcCCC-CCeEEEEECCHHHHHHHHHHhc
Q 043011 37 EAIGSVFSAFGDVKGIYAADDS-GARVIVSYFDEGSAQAAFNSLH 80 (133)
Q Consensus 37 ~~L~~~F~~fG~V~~v~~~~~~-kg~afV~f~~~~~A~~A~~~l~ 80 (133)
.++.+...++| +....+.+.. -++.|+-+.+.+.|+++.+.+.
T Consensus 37 ~~~~~~~~~~G-a~~~~~sGsG~G~~v~~l~~~~~~~~~v~~~l~ 80 (85)
T PF08544_consen 37 DELKEAAEENG-ALGAKMSGSGGGPTVFALCKDEDDAERVAEALR 80 (85)
T ss_dssp HHHHHHHHHTT-ESEEEEETTSSSSEEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHHCC-CCceecCCCCCCCeEEEEECCHHHHHHHHHHHH
Confidence 45677789999 6666665542 5678888889999999888764
No 168
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=57.31 E-value=18 Score=22.25 Aligned_cols=24 Identities=13% Similarity=0.092 Sum_probs=21.1
Q ss_pred CeEEEEECCHHHHHHHHHHhcCCC
Q 043011 60 ARVIVSYFDEGSAQAAFNSLHSRP 83 (133)
Q Consensus 60 g~afV~f~~~~~A~~A~~~l~g~~ 83 (133)
.+.+|.|.+..+|.+|-+.|....
T Consensus 2 ~~~~i~F~st~~a~~~ek~lk~~g 25 (73)
T PF11823_consen 2 KYYLITFPSTHDAMKAEKLLKKNG 25 (73)
T ss_pred ceEEEEECCHHHHHHHHHHHHHCC
Confidence 468999999999999999998765
No 169
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=57.03 E-value=42 Score=28.27 Aligned_cols=69 Identities=14% Similarity=0.126 Sum_probs=48.8
Q ss_pred CCCCCCCCCCCCCCCCeEEEeccCCCCCCCHHHHHHHhhcCCCe-eEEEEcCCCCCeEEEEECCHHHHHHHHHH
Q 043011 6 NSRFRRPKAGEDERSPNLFVANCGPAVGVSYEAIGSVFSAFGDV-KGIYAADDSGARVIVSYFDEGSAQAAFNS 78 (133)
Q Consensus 6 ~~~f~~p~~~~~~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V-~~v~~~~~~kg~afV~f~~~~~A~~A~~~ 78 (133)
++.+..+-.....---.|=|-+.+.. ...+||-.+|+.||+= -+|.+.. .-.||-.|.+...|..|+..
T Consensus 377 ~s~~p~~ll~e~dlpHVlEIydfp~e--fkteDll~~f~~yq~kgfdIkWvD--dthalaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 377 MSKAPPPLLRESDLPHVLEIYDFPDE--FKTEDLLKAFETYQNKGFDIKWVD--DTHALAVFSSVNRAAEALTL 446 (528)
T ss_pred cccCCCCCCCcccccceeEeccCchh--hccHHHHHHHHHhhcCCceeEEee--cceeEEeecchHHHHHHhhc
Confidence 34444444344445567889999998 8999999999999752 3444322 34688889999999888863
No 170
>TIGR02542 B_forsyth_147 Bacteroides forsythus 147-residue repeat. The longest predicted protein in Bacteroides forsythus ATCC 43037 is over 3000 residues long and lacks homology to other known proteins. Immediately after the signal sequence are four tandem repeats, approximately 147 residues long. This model describes that repeat. This model describes that repeat.
Probab=56.71 E-value=20 Score=24.98 Aligned_cols=85 Identities=14% Similarity=0.183 Sum_probs=49.7
Q ss_pred cCCCCCCCHHHHHHHhhcCCCeeEEEEcCCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCeeEEEEeeecCC-CCCCC
Q 043011 28 CGPAVGVSYEAIGSVFSAFGDVKGIYAADDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRFLHISYSVLED-SPATR 106 (133)
Q Consensus 28 l~~~~~vte~~L~~~F~~fG~V~~v~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~l~V~~a~~~~-~~~~~ 106 (133)
||+- .+.|.+.|+.=|+|.+|... -.|.| . .|+-.++|.. ..++|. |+|--..... .+-+.
T Consensus 11 lPPY----TnKLSDYfeSPGKI~svItv--------tqypd-n---dal~~~~G~l-E~vDg~-i~IGs~q~~~sV~i~g 72 (145)
T TIGR02542 11 LPPY----TNKLSDYFESPGKIQSVITV--------TQYPD-N---DALLYVHGTL-EQVDGN-IRIGSGQTPASVRIQG 72 (145)
T ss_pred cCCc----cchhhHHhcCCCceEEEEEE--------eccCC-c---hhhheeeeeh-hhccCc-EEEccCCCcccEEEec
Confidence 6666 45789999999999998651 12221 2 2344566653 335555 6665443222 11122
Q ss_pred CCcceeEeeecCCCCCchhhhhhhc
Q 043011 107 HITSSVPVSLVASELNIPGLHSCFM 131 (133)
Q Consensus 107 ~~~~~l~v~nl~~~~~~~~l~~~f~ 131 (133)
...| =.|+--|.+++..+|+++|.
T Consensus 73 TPsg-nnv~F~PYTlT~~e~r~iF~ 96 (145)
T TIGR02542 73 TPSG-NNVIFPPYTLTYNELRQIFR 96 (145)
T ss_pred CCCC-CceecCceeeeHHHHHHHHh
Confidence 2222 12445678899999999996
No 171
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=54.92 E-value=19 Score=25.92 Aligned_cols=38 Identities=26% Similarity=0.322 Sum_probs=33.3
Q ss_pred CCCCCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEc
Q 043011 16 EDERSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAA 55 (133)
Q Consensus 16 ~~~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~ 55 (133)
.......++++|++.. ++..++...|..+|.+..+.+.
T Consensus 221 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 258 (306)
T COG0724 221 LLEKSDNLYVGNLPLK--TAEEELADLFKSRGDIVRASLP 258 (306)
T ss_pred cccccceeeccccccc--cchhHHHHhccccccceeeecc
Confidence 4556889999999999 9999999999999999777663
No 172
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=54.45 E-value=3.5 Score=31.82 Aligned_cols=64 Identities=20% Similarity=0.205 Sum_probs=51.7
Q ss_pred CCCCeEEEec----cCCCCCCCHHHHHHHhhcCCCeeEEEEc----CCCCCeEEEEECCHHHHHHHHHHhcCCC
Q 043011 18 ERSPNLFVAN----CGPAVGVSYEAIGSVFSAFGDVKGIYAA----DDSGARVIVSYFDEGSAQAAFNSLHSRP 83 (133)
Q Consensus 18 ~~~~~L~V~N----l~~~~~vte~~L~~~F~~fG~V~~v~~~----~~~kg~afV~f~~~~~A~~A~~~l~g~~ 83 (133)
+...+++.|| |... ++++.+.+.|++-|.++.+++. ++++.+.|+++.-..+.=.|.+..++..
T Consensus 78 e~q~~~r~G~shapld~r--~~~ei~~~v~s~a~p~~~~R~~~~~d~rnrn~~~~~~qr~~~~P~~~~~y~~l~ 149 (267)
T KOG4454|consen 78 EEQRTLRCGNSHAPLDER--VTEEILYEVFSQAGPIEGVRIPTDNDGRNRNFGFVTYQRLCAVPFALDLYQGLE 149 (267)
T ss_pred hhhcccccCCCcchhhhh--cchhhheeeecccCCCCCccccccccCCccCccchhhhhhhcCcHHhhhhcccC
Confidence 3456788888 7777 9999999999999999998873 3467889999988777777887777776
No 173
>PRK08211 putative dehydratase; Provisional
Probab=53.03 E-value=82 Score=28.01 Aligned_cols=59 Identities=27% Similarity=0.222 Sum_probs=42.7
Q ss_pred eEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEcC----------CCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCee
Q 043011 22 NLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAAD----------DSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRF 91 (133)
Q Consensus 22 ~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~~----------~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~ 91 (133)
.+.-|||.++ |.|.++--.. ..+|-| +.|.+.++|.+|+. +|.. -.|..
T Consensus 438 ~vL~GNLAP~---------------GAViK~sav~~~~~~~~~~~~~~GpA-rVF~seeda~~AI~--~g~I---~~GdV 496 (655)
T PRK08211 438 TFPVGNIAPE---------------GSVIKSTAIDPSVIDEDGVYRHTGRA-RVFTSEKSAIAAIK--HGEI---KAGDI 496 (655)
T ss_pred EEEeccCCCC---------------CeEEEecccCchhcccccceEEEEeE-EEECCHHHHHHHHh--CCCC---CCCcE
Confidence 6777999988 6555443211 234545 66999999999996 5665 66889
Q ss_pred EEEEeeecCC
Q 043011 92 LHISYSVLED 101 (133)
Q Consensus 92 l~V~~a~~~~ 101 (133)
+.|+|.-|+-
T Consensus 497 vVIRyeGPkG 506 (655)
T PRK08211 497 LVLIGGGPSG 506 (655)
T ss_pred EEEeCCCCCC
Confidence 9999998875
No 174
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=52.80 E-value=9.3 Score=26.17 Aligned_cols=48 Identities=19% Similarity=0.187 Sum_probs=24.2
Q ss_pred eEEEeccCCC-------CCCCHHHHHHHhhcCCCeeEEEE--cCCCCCeEEEEECCH
Q 043011 22 NLFVANCGPA-------VGVSYEAIGSVFSAFGDVKGIYA--ADDSGARVIVSYFDE 69 (133)
Q Consensus 22 ~L~V~Nl~~~-------~~vte~~L~~~F~~fG~V~~v~~--~~~~kg~afV~f~~~ 69 (133)
+..|-|++-. .+.+.++|++.|+.|..++-..+ ...+.|++.|.|..-
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~kv~~l~~~~gh~g~aiv~F~~~ 66 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLKVKPLYGKQGHTGFAIVEFNKD 66 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SEEEEEEETTEEEEEEEEE--SS
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCceeEECcCCCCCcEEEEEEECCC
Confidence 3456666322 24678899999999987653333 234578999999653
No 175
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=51.89 E-value=14 Score=25.37 Aligned_cols=27 Identities=4% Similarity=0.047 Sum_probs=23.1
Q ss_pred CCCCcceeEeeecCCCCCchhhhhhhc
Q 043011 105 TRHITSSVPVSLVASELNIPGLHSCFM 131 (133)
Q Consensus 105 ~~~~~~~l~v~nl~~~~~~~~l~~~f~ 131 (133)
.++.++-|+|.|||..++..+.-+||-
T Consensus 14 ppevnriLyirNLp~~ITseemydlFG 40 (124)
T KOG0114|consen 14 PPEVNRILYIRNLPFKITSEEMYDLFG 40 (124)
T ss_pred ChhhheeEEEecCCccccHHHHHHHhh
Confidence 455566799999999999999999985
No 176
>PRK00911 dihydroxy-acid dehydratase; Provisional
Probab=50.35 E-value=92 Score=27.17 Aligned_cols=61 Identities=18% Similarity=0.148 Sum_probs=43.5
Q ss_pred CCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEcC--CCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCeeEEEEee
Q 043011 20 SPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAAD--DSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRFLHISYS 97 (133)
Q Consensus 20 ~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~~--~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~l~V~~a 97 (133)
.-.+.=|||.++ |.|.+.--.. ..+|-| +.|++.++|.+|+.. |+. -.|..|.|+|.
T Consensus 372 gl~vL~GNLaP~---------------GaViK~sa~~~~~~~GpA-~VF~see~a~~ai~~--g~I---~~gdVvViRye 430 (552)
T PRK00911 372 GLAILKGNLAPE---------------GAVVKIAGVKPEMFTGPA-RVFDSEEEAMEAILA--GKI---KAGDVVVIRYE 430 (552)
T ss_pred CEEEEecCCCCC---------------ceEEEccccCCcceeeeE-EEECCHHHHHHHHhc--CCC---CCCeEEEEeCC
Confidence 345556888887 6554443211 245555 669999999999975 666 66899999999
Q ss_pred ecCC
Q 043011 98 VLED 101 (133)
Q Consensus 98 ~~~~ 101 (133)
-|+-
T Consensus 431 GPkG 434 (552)
T PRK00911 431 GPKG 434 (552)
T ss_pred CCCC
Confidence 8885
No 177
>PRK06131 dihydroxy-acid dehydratase; Validated
Probab=49.98 E-value=68 Score=28.06 Aligned_cols=63 Identities=16% Similarity=0.083 Sum_probs=43.6
Q ss_pred CCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEc----CCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCeeEEEE
Q 043011 20 SPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAA----DDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRFLHIS 95 (133)
Q Consensus 20 ~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~----~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~l~V~ 95 (133)
.-.+.-|||.++ |.|.++--. ...+|-| +.|++.++|.+|+. +|+. .--.|..+.|+
T Consensus 373 gl~vL~GNLaP~---------------GaViK~sav~~~~~~~~G~A-~VF~see~a~~ai~--~g~i-~i~~gdVvVIR 433 (571)
T PRK06131 373 GIAVLRGNLAPD---------------GAVIKPSAASPELLKHEGRA-VVFEGYEDYKARID--DPDL-DVDEDTVLVLR 433 (571)
T ss_pred CeEEeecCCCCC---------------CceeeecccCccccEEEeee-EEECCHHHHHHHHh--CCCc-CCCCCeEEEEe
Confidence 456667899887 666554321 2245666 66999999999985 5653 00268999999
Q ss_pred eeecCC
Q 043011 96 YSVLED 101 (133)
Q Consensus 96 ~a~~~~ 101 (133)
|.-|+-
T Consensus 434 yeGPkG 439 (571)
T PRK06131 434 NAGPKG 439 (571)
T ss_pred CCCCCC
Confidence 998886
No 178
>COG0129 IlvD Dihydroxyacid dehydratase/phosphogluconate dehydratase [Amino acid transport and metabolism / Carbohydrate transport and metabolism]
Probab=48.94 E-value=94 Score=27.24 Aligned_cols=61 Identities=18% Similarity=0.120 Sum_probs=43.6
Q ss_pred CCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEcC----CCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCeeEEEE
Q 043011 20 SPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAAD----DSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRFLHIS 95 (133)
Q Consensus 20 ~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~~----~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~l~V~ 95 (133)
.-.+.-|||.++ |-|.++--.. ..+|-| +.|.+.++|.+|+. +|.. -.|..+.|+
T Consensus 387 Gl~vL~GNLap~---------------gaViK~sav~~~~~~~eGpA-~VFds~e~~~~ai~--~g~l---~~g~VvVIR 445 (575)
T COG0129 387 GLAVLKGNLAPD---------------GAVIKTSAVDPEIRVFEGPA-RVFDSQEDAIKAIL--DGEL---KAGDVVVIR 445 (575)
T ss_pred CeEEeecccCCC---------------CceEEeeccCchhceEEeee-EEECCHHHHHHHHh--cCCC---CCCeEEEEe
Confidence 446667888877 5565544321 134555 66999999999985 6666 668999999
Q ss_pred eeecCC
Q 043011 96 YSVLED 101 (133)
Q Consensus 96 ~a~~~~ 101 (133)
|.-|+-
T Consensus 446 yeGPkG 451 (575)
T COG0129 446 YEGPKG 451 (575)
T ss_pred ccCCCC
Confidence 998886
No 179
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=48.14 E-value=83 Score=27.62 Aligned_cols=71 Identities=13% Similarity=0.164 Sum_probs=54.3
Q ss_pred eEEEeccCCCCCCCHHHHHHHhhcCCCeeE-----EEEcCCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCeeEEEEe
Q 043011 22 NLFVANCGPAVGVSYEAIGSVFSAFGDVKG-----IYAADDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRFLHISY 96 (133)
Q Consensus 22 ~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~-----v~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~l~V~~ 96 (133)
++|| |++...+++..+|-.+...-+.|.+ |.+ ...|.||+- ..+.|...++.|++.. +.|+++.|+.
T Consensus 488 ~~~~-~~g~~~~~~~~~~~~~i~~~~~~~~~~ig~i~i---~~~~s~v~~-~~~~~~~~~~~~~~~~---~~~~~~~~~~ 559 (629)
T PRK11634 488 LYRI-EVGRDDGVEVRHIVGAIANEGDISSRYIGNIKL---FASHSTIEL-PKGMPGEVLQHFTRTR---ILNKPMNMQL 559 (629)
T ss_pred EEEE-ecccccCCCHHHHHHHHHhhcCCChhhCCcEEE---eCCceEEEc-ChhhHHHHHHHhcccc---ccCCceEEEE
Confidence 4555 7887778999998877766665543 444 456899998 4567889999999999 9999999998
Q ss_pred eecC
Q 043011 97 SVLE 100 (133)
Q Consensus 97 a~~~ 100 (133)
+...
T Consensus 560 ~~~~ 563 (629)
T PRK11634 560 LGDA 563 (629)
T ss_pred CCCC
Confidence 7533
No 180
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=48.05 E-value=2.9 Score=36.16 Aligned_cols=69 Identities=17% Similarity=0.209 Sum_probs=52.4
Q ss_pred CCCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEc-----CCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCee
Q 043011 18 ERSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAA-----DDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRF 91 (133)
Q Consensus 18 ~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~-----~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~ 91 (133)
...++||++|+.++ ++-++|..+++.+--+..+.+. .....+.+|+|.---.-..|+.+||+.. +....
T Consensus 229 hke~sll~rni~Pn--is~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~ir---l~s~~ 302 (648)
T KOG2295|consen 229 HKECSLLVRNILPN--ISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIR---LRSNF 302 (648)
T ss_pred hHHHHHHHhccCCc--ccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcc---ccccc
Confidence 34678999999999 9999999999999766666552 2234557899987777777888888877 55443
No 181
>CHL00123 rps6 ribosomal protein S6; Validated
Probab=47.72 E-value=78 Score=20.72 Aligned_cols=53 Identities=9% Similarity=0.184 Sum_probs=32.5
Q ss_pred CeEEEeccCCCCCCCHHHHHHHh-------hcCC-CeeEEEEc----------CCCCC-eEEEEECCHHHHHHHHH
Q 043011 21 PNLFVANCGPAVGVSYEAIGSVF-------SAFG-DVKGIYAA----------DDSGA-RVIVSYFDEGSAQAAFN 77 (133)
Q Consensus 21 ~~L~V~Nl~~~~~vte~~L~~~F-------~~fG-~V~~v~~~----------~~~kg-~afV~f~~~~~A~~A~~ 77 (133)
.++|| +.++ ++++++.++. .+.| +|.++..- +..+| |.++.|.-..++.+.++
T Consensus 9 E~~~I--l~p~--l~e~~~~~~~~~~~~~i~~~gg~i~~~~~wG~r~LAY~I~k~~~G~Yv~~~f~~~~~~i~ele 80 (97)
T CHL00123 9 ETMYL--LKPD--LNEEELLKWIENYKKLLRKRGAKNISVQNRGKRKLSYKINKYEDGIYIQMNYSGNGKLVNSLE 80 (97)
T ss_pred eEEEE--ECCC--CCHHHHHHHHHHHHHHHHHCCCEEEEEEeecCeeeeEEcCCCCEEEEEEEEEEECHHHHHHHH
Confidence 35666 5677 8888876654 4444 67666532 23456 46677876666666554
No 182
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=45.79 E-value=18 Score=28.10 Aligned_cols=37 Identities=19% Similarity=0.271 Sum_probs=31.5
Q ss_pred CCCCCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEE
Q 043011 16 EDERSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYA 54 (133)
Q Consensus 16 ~~~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~ 54 (133)
......+||+-|+|.. .+++-|++..++.|-++.+..
T Consensus 36 ~~~eKd~lfl~Nvp~~--~tee~lkr~vsqlg~vq~~~y 72 (261)
T KOG4008|consen 36 NSNEKDCLFLVNVPLL--STEEHLKRFVSQLGHVQELLY 72 (261)
T ss_pred ccccccceeeeccccc--ccHHHHHHHHHHhhhhhheec
Confidence 4556789999999999 999999999999997665544
No 183
>TIGR03432 yjhG_yagF probable dehydratase, YjhG/YagF family. This homolog of dihydroxy-acid dehydratases has an odd, sparse distribution. Members are found in two Acidobacteria, two Planctomycetes, Bacillus clausii KSM-K16, and (in two copies each) in strains K12-MG1655 and W3110 of Escherichia coli. The local context is not well conserved, but a few members are adjacent to homologs of the gluconate:H+ symporter (see TIGR00791).
Probab=45.31 E-value=1.3e+02 Score=26.82 Aligned_cols=59 Identities=24% Similarity=0.156 Sum_probs=42.0
Q ss_pred eEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEcC----------CCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCee
Q 043011 22 NLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAAD----------DSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRF 91 (133)
Q Consensus 22 ~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~~----------~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~ 91 (133)
.+.=|||.++ |.|.+.--.. ..+|-| +.|.+.++|.+|+. +|.. -.|..
T Consensus 432 ~vL~GNLAP~---------------GAViK~sav~~~~~~~~~~~~~~GpA-rVFdsee~a~~AI~--~g~I---~~GdV 490 (640)
T TIGR03432 432 TFPKGNLAPE---------------GSVIKSTAIDPSVVDEDGVYRHTGPA-RVFSSEKSAIAAIK--HGKI---EAGDV 490 (640)
T ss_pred EEEeccCCCC---------------ceEEEecccCchhcccccceEEEEeE-EEECCHHHHHHHHh--CCCC---CCCcE
Confidence 6667889887 5554443211 234555 66999999999995 5666 66889
Q ss_pred EEEEeeecCC
Q 043011 92 LHISYSVLED 101 (133)
Q Consensus 92 l~V~~a~~~~ 101 (133)
+.|+|.-|+-
T Consensus 491 vVIRyeGPkG 500 (640)
T TIGR03432 491 LVLIGRGPSG 500 (640)
T ss_pred EEEeCCCCCC
Confidence 9999998875
No 184
>PF08734 GYD: GYD domain; InterPro: IPR014845 These proteins of unknown function are usually less than 100 amino acids in length. They may belong to the dimeric alpha/beta barrel superfamily.
Probab=45.17 E-value=83 Score=20.30 Aligned_cols=45 Identities=29% Similarity=0.358 Sum_probs=34.2
Q ss_pred HHHHHHHhhcCC-CeeEEEEc-CCCCCeEEEEECCHHHHHHHHHHhc
Q 043011 36 YEAIGSVFSAFG-DVKGIYAA-DDSGARVIVSYFDEGSAQAAFNSLH 80 (133)
Q Consensus 36 e~~L~~~F~~fG-~V~~v~~~-~~~kg~afV~f~~~~~A~~A~~~l~ 80 (133)
.+.++++.++.| +++++++. ++---...+++.|.+.|.++.-.+.
T Consensus 22 ~~a~~~~~e~~Gg~l~~~y~t~G~yD~v~i~eaPD~~~a~~~~l~i~ 68 (91)
T PF08734_consen 22 AEAVRALIEALGGKLKSFYWTLGEYDFVVIVEAPDDETAAAASLAIR 68 (91)
T ss_pred HHHHHHHHHHcCCEEEEEEEecCCCCEEEEEEcCCHHHHHHHHHHHH
Confidence 466788888886 79998874 5555667889999998887776554
No 185
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=44.69 E-value=18 Score=31.16 Aligned_cols=58 Identities=16% Similarity=0.125 Sum_probs=42.3
Q ss_pred HHHhhcCCCeeEEEEcCCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCeeEEEEeeecC
Q 043011 40 GSVFSAFGDVKGIYAADDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRFLHISYSVLE 100 (133)
Q Consensus 40 ~~~F~~fG~V~~v~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~l~V~~a~~~ 100 (133)
+..+...+...+-.-..+...++++.|++...+.+|+..++|.. ..+..++++-+...
T Consensus 44 k~~~~~~~~~~s~tk~~~~~~~~~~~~et~~~~~ka~~~v~g~~---~k~~~~~~~~~~~~ 101 (534)
T KOG2187|consen 44 KVLLKILRDVKSKTKLPKMPKYAYVTFETPSDAGKAINLVDGLL---YKGFILRVQLGATE 101 (534)
T ss_pred hhhhhhcccccccCCCCCCCCceEEEEeccchhhhHHHHHhhhh---hhcchhhhhhcccc
Confidence 44555555555442224567899999999999999999999998 77777777655443
No 186
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=44.52 E-value=14 Score=28.75 Aligned_cols=22 Identities=23% Similarity=0.173 Sum_probs=20.2
Q ss_pred ceeEeeecCCCCCchhhhhhhc
Q 043011 110 SSVPVSLVASELNIPGLHSCFM 131 (133)
Q Consensus 110 ~~l~v~nl~~~~~~~~l~~~f~ 131 (133)
..+.|.||+..+...+|.+||.
T Consensus 84 ~~v~v~NL~~~V~~~Dl~eLF~ 105 (243)
T KOG0533|consen 84 TKVNVSNLPYGVIDADLKELFA 105 (243)
T ss_pred ceeeeecCCcCcchHHHHHHHH
Confidence 3599999999999999999996
No 187
>PRK12448 dihydroxy-acid dehydratase; Provisional
Probab=43.70 E-value=1.6e+02 Score=26.11 Aligned_cols=61 Identities=13% Similarity=0.099 Sum_probs=43.4
Q ss_pred CCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEcC----CCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCeeEEEE
Q 043011 20 SPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAAD----DSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRFLHIS 95 (133)
Q Consensus 20 ~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~~----~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~l~V~ 95 (133)
.-.+.=|||.++ |.|.++--.. ..+|-| +.|++.++|.+|+.. |+. -.|..+.|+
T Consensus 420 gl~vL~GNLAP~---------------GAViK~sav~~~~~~~~GpA-~VFdsee~a~~ai~~--g~I---~~gdVvVIR 478 (615)
T PRK12448 420 GLAVLYGNIAED---------------GCIVKTAGVDESILKFTGPA-RVFESQDDAVEAILG--GKV---KAGDVVVIR 478 (615)
T ss_pred CEEEeecCCCCC---------------CeEEEecccCCcceEEEEeE-EEECCHHHHHHHHhc--CCC---CCCeEEEEe
Confidence 345556788877 6665543211 135555 669999999999975 666 679999999
Q ss_pred eeecCC
Q 043011 96 YSVLED 101 (133)
Q Consensus 96 ~a~~~~ 101 (133)
|.-|+-
T Consensus 479 yeGPkG 484 (615)
T PRK12448 479 YEGPKG 484 (615)
T ss_pred CCCCCC
Confidence 998886
No 188
>PRK05738 rplW 50S ribosomal protein L23; Reviewed
Probab=43.30 E-value=85 Score=20.45 Aligned_cols=32 Identities=22% Similarity=0.426 Sum_probs=24.1
Q ss_pred CeEEEeccCCCCCCCHHHHHHHhhc-CC-CeeEEEE
Q 043011 21 PNLFVANCGPAVGVSYEAIGSVFSA-FG-DVKGIYA 54 (133)
Q Consensus 21 ~~L~V~Nl~~~~~vte~~L~~~F~~-fG-~V~~v~~ 54 (133)
.+-|+-.++.. ++..|+++.+++ || +|.+|..
T Consensus 20 ~n~~~F~V~~~--a~K~eIK~aie~lf~VkV~~VnT 53 (92)
T PRK05738 20 QNKYVFEVAPD--ATKPEIKAAVEKLFGVKVESVNT 53 (92)
T ss_pred CCEEEEEECCC--CCHHHHHHHHHHHcCCceeEEEE
Confidence 35566678888 999999999987 66 4666653
No 189
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=42.89 E-value=18 Score=28.30 Aligned_cols=25 Identities=16% Similarity=0.231 Sum_probs=22.2
Q ss_pred CcceeEeeecCCCCCchhhhhhhcc
Q 043011 108 ITSSVPVSLVASELNIPGLHSCFMT 132 (133)
Q Consensus 108 ~~~~l~v~nl~~~~~~~~l~~~f~~ 132 (133)
...++-|.||+.++..++|.+||..
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~ 212 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRP 212 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhc
Confidence 4567999999999999999999964
No 190
>PTZ00380 microtubule-associated protein (MAP); Provisional
Probab=40.82 E-value=42 Score=23.31 Aligned_cols=38 Identities=21% Similarity=0.223 Sum_probs=23.5
Q ss_pred CeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEcCCCCCeEEEEECCHH
Q 043011 21 PNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAADDSGARVIVSYFDEG 70 (133)
Q Consensus 21 ~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~~~~kg~afV~f~~~~ 70 (133)
-.|||.|.-+. +..-+.+++.+|- +..||-||.|.+.+
T Consensus 71 ~flfVnn~lp~---~s~~mg~lYe~~K---------DeDGFLYi~Ys~e~ 108 (121)
T PTZ00380 71 VTLAIEGSTPA---VTATVGDIADACK---------RDDGFLYVSVRTEQ 108 (121)
T ss_pred EEEEECCccCC---ccchHHHHHHHhc---------CCCCeEEEEEcccc
Confidence 46778773222 2344666666663 34788888887654
No 191
>PF08206 OB_RNB: Ribonuclease B OB domain; InterPro: IPR013223 This domain includes the N-terminal OB domain found in ribonuclease B proteins in one or two copies.; PDB: 2ID0_D 2IX1_A 2IX0_A.
Probab=40.65 E-value=23 Score=20.88 Aligned_cols=38 Identities=8% Similarity=-0.068 Sum_probs=22.5
Q ss_pred CCCCeEEEEECC-HHHHHHHHHHhcCCCCCCCCCeeEEEEeee
Q 043011 57 DSGARVIVSYFD-EGSAQAAFNSLHSRPCPDLANRFLHISYSV 98 (133)
Q Consensus 57 ~~kg~afV~f~~-~~~A~~A~~~l~g~~~~~l~gr~l~V~~a~ 98 (133)
.++||+||...+ .++---+-..|++. +.|-++.|....
T Consensus 6 ~~~GfGFv~~~~~~~DifIp~~~l~~A----~~gD~V~v~i~~ 44 (58)
T PF08206_consen 6 HPKGFGFVIPDDGGEDIFIPPRNLNGA----MDGDKVLVRITP 44 (58)
T ss_dssp -SSS-EEEEECT-TEEEEE-HHHHTTS-----TT-EEEEEEEE
T ss_pred EcCCCEEEEECCCCCCEEECHHHHCCC----CCCCEEEEEEec
Confidence 478999999987 33333344566665 467777776665
No 192
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=37.86 E-value=16 Score=32.99 Aligned_cols=24 Identities=13% Similarity=0.146 Sum_probs=21.6
Q ss_pred cceeEeeecCCCCCchhhhhhhcc
Q 043011 109 TSSVPVSLVASELNIPGLHSCFMT 132 (133)
Q Consensus 109 ~~~l~v~nl~~~~~~~~l~~~f~~ 132 (133)
..|||||.|+..+...+|.++|..
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~fee 444 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEE 444 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHh
Confidence 367999999999999999999964
No 193
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=33.63 E-value=40 Score=27.60 Aligned_cols=23 Identities=22% Similarity=0.296 Sum_probs=20.7
Q ss_pred ceeEeeecCCCCCchhhhhhhcc
Q 043011 110 SSVPVSLVASELNIPGLHSCFMT 132 (133)
Q Consensus 110 ~~l~v~nl~~~~~~~~l~~~f~~ 132 (133)
+.|.|+|||...-.|+|+..|..
T Consensus 97 kRLhVSNIPFrFRdpDL~aMF~k 119 (376)
T KOG0125|consen 97 KRLHVSNIPFRFRDPDLRAMFEK 119 (376)
T ss_pred ceeEeecCCccccCccHHHHHHh
Confidence 45999999999999999999963
No 194
>PF15063 TC1: Thyroid cancer protein 1
Probab=33.38 E-value=25 Score=22.48 Aligned_cols=29 Identities=24% Similarity=0.220 Sum_probs=23.9
Q ss_pred CCCeEEEeccCCCCCCCHHHHHHHhhcCCCe
Q 043011 19 RSPNLFVANCGPAVGVSYEAIGSVFSAFGDV 49 (133)
Q Consensus 19 ~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V 49 (133)
..++==+.||=.+ ++.+.|..+|.+-|+-
T Consensus 24 ~~RKkasaNIFe~--vn~~qlqrLF~~sGD~ 52 (79)
T PF15063_consen 24 ASRKKASANIFEN--VNLDQLQRLFQKSGDK 52 (79)
T ss_pred HHhhhhhhhhhhc--cCHHHHHHHHHHccch
Confidence 3455557888888 9999999999999975
No 195
>PHA03008 hypothetical protein; Provisional
Probab=32.58 E-value=1.4e+02 Score=22.77 Aligned_cols=48 Identities=25% Similarity=0.252 Sum_probs=36.3
Q ss_pred CCCCCCCCCCCCCCCCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEc
Q 043011 5 SNSRFRRPKAGEDERSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAA 55 (133)
Q Consensus 5 ~~~~f~~p~~~~~~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~ 55 (133)
||-.+.+.. ...+-+..+||+|+..- -+.+-++-+|.+|.++..|...
T Consensus 7 sn~n~p~~~-~~~~~~d~~~~snit~~--h~~n~i~~ff~~~d~~~~~ifv 54 (234)
T PHA03008 7 SNINLPRNN-KIDEICDIAFISNITHI--HDHNIIKIFFDKFDDFDEIIFV 54 (234)
T ss_pred cccCCcccc-CCcccccEEEEeccccc--ccccHHHHHHhhccccceEEEc
Confidence 444454432 34556788999999998 8888899999999999887653
No 196
>COG5353 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.91 E-value=2e+02 Score=20.87 Aligned_cols=47 Identities=11% Similarity=0.175 Sum_probs=34.3
Q ss_pred CeEEEeccCCCCCCCHHHHHHHhhcCC---CeeEEEEc--------------CCCCC-eEEEEECCH
Q 043011 21 PNLFVANCGPAVGVSYEAIGSVFSAFG---DVKGIYAA--------------DDSGA-RVIVSYFDE 69 (133)
Q Consensus 21 ~~L~V~Nl~~~~~vte~~L~~~F~~fG---~V~~v~~~--------------~~~kg-~afV~f~~~ 69 (133)
.++++.-++.. +++++.+++-++=+ ++.+|++. ...+. |-+|.|++-
T Consensus 88 ~KI~~k~asqG--ISe~~a~~~i~kE~~~~e~~~V~Lg~e~~~PiWEV~y~dkeg~~s~~~vdFetG 152 (161)
T COG5353 88 GKIYSKKASQG--ISEEDARAIISKEKAVKEIKSVTLGREKEKPIWEVTYLDKEGRLSFYYVDFETG 152 (161)
T ss_pred CeEEEEehhcC--CCHHHHHHHHhhhccccceeEEEEEeeCCceeEEEeecCccCcceEEEEEeccc
Confidence 68899988888 99999999887764 55666552 12344 778888764
No 197
>cd04489 ExoVII_LU_OBF ExoVII_LU_OBF: A subfamily of OB folds corresponding to the N-terminal OB-fold domain of Escherichia coli exodeoxyribonuclease VII (ExoVII) large subunit. E. coli ExoVII is composed of two non-identical subunits. E. coli ExoVII is a single-strand-specific exonuclease which degrades ssDNA from both 3-prime and 5-prime ends. ExoVII plays a role in methyl-directed mismatch repair in vivo. ExoVII may also guard the genome from mutagenesis by removing excess ssDNA, since the build up of ssDNA would lead to SOS induction and PolIV-dependent mutagenesis.
Probab=30.67 E-value=36 Score=20.55 Aligned_cols=22 Identities=18% Similarity=0.362 Sum_probs=15.5
Q ss_pred CCeeEEEEcCCCCCeEEEEECCHH
Q 043011 47 GDVKGIYAADDSGARVIVSYFDEG 70 (133)
Q Consensus 47 G~V~~v~~~~~~kg~afV~f~~~~ 70 (133)
|.|.+++. ..+|+||++..|..
T Consensus 6 g~v~~i~~--tk~g~~~~~L~D~~ 27 (78)
T cd04489 6 GEISNLKR--PSSGHLYFTLKDED 27 (78)
T ss_pred EEEecCEE--CCCcEEEEEEEeCC
Confidence 56667766 34579998887765
No 198
>COG5584 Predicted small secreted protein [Function unknown]
Probab=30.53 E-value=42 Score=22.49 Aligned_cols=26 Identities=19% Similarity=0.408 Sum_probs=18.8
Q ss_pred ccCCCCCCCHHHHHHHhhcCCCeeEEEE
Q 043011 27 NCGPAVGVSYEAIGSVFSAFGDVKGIYA 54 (133)
Q Consensus 27 Nl~~~~~vte~~L~~~F~~fG~V~~v~~ 54 (133)
|++.. .--+-+++.|+++|+|+.-.+
T Consensus 29 ~is~e--~alk~vk~afk~~mnI~GSwI 54 (103)
T COG5584 29 NISRE--NALKVVKEAFKQFMNIKGSWI 54 (103)
T ss_pred ccChh--HHHHHHHHHhcccCCcceeEE
Confidence 34444 445567899999999988765
No 199
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=30.05 E-value=1.4e+02 Score=25.36 Aligned_cols=66 Identities=12% Similarity=0.090 Sum_probs=45.8
Q ss_pred CCCeEEEeccCCCCCC-CHHHHHHHhhcCCCeeEEEEcCCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCeeE
Q 043011 19 RSPNLFVANCGPAVGV-SYEAIGSVFSAFGDVKGIYAADDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRFL 92 (133)
Q Consensus 19 ~~~~L~V~Nl~~~~~v-te~~L~~~F~~fG~V~~v~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~l 92 (133)
|..-=+||||..-... ....+.++=.+||+|-.+++ +.. -.|.-.+.+.|..|+.. ||.. +.+|+.
T Consensus 31 P~~lPiIGnl~~l~~~~~h~~~~~ls~~yGpi~tl~l-G~~---~~Vviss~~~akE~l~~-~d~~---fa~Rp~ 97 (489)
T KOG0156|consen 31 PPPLPIIGNLHQLGSLPPHRSFRKLSKKYGPVFTLRL-GSV---PVVVISSYEAAKEVLVK-QDLE---FADRPD 97 (489)
T ss_pred CCCCCccccHHHcCCCchhHHHHHHHHHhCCeEEEEe-cCc---eEEEECCHHHHHHHHHh-CCcc---ccCCCC
Confidence 4455568998765222 34556677789999999998 322 25777888888888763 5667 788875
No 200
>PRK13016 dihydroxy-acid dehydratase; Provisional
Probab=30.02 E-value=1.8e+02 Score=25.55 Aligned_cols=63 Identities=14% Similarity=0.106 Sum_probs=41.9
Q ss_pred CCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEcC----CCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCeeEEEE
Q 043011 20 SPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAAD----DSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRFLHIS 95 (133)
Q Consensus 20 ~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~~----~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~l~V~ 95 (133)
.-.+.=|||.++ |.|.++--.. ..+|-| +.|++.++|.+|+. +|.. .--.|..+.|+
T Consensus 378 gl~iL~GNLAP~---------------GaViK~sav~~~~~~~~GpA-~VF~see~a~~ai~--~g~i-~i~~GdVvVIR 438 (577)
T PRK13016 378 SLAVLRGNLAPD---------------GAVIKPAACDPKFLVHRGPA-LVFDSYPEMKAAID--DENL-DVTPDHVMVLR 438 (577)
T ss_pred CEEEeecCCCCC---------------ceEEEecccCCcccEEEeeE-EEECCHHHHHHHHh--CCCc-CCCCCeEEEEe
Confidence 345556888887 6665543211 235666 56999999999986 4532 00258999999
Q ss_pred eeecCC
Q 043011 96 YSVLED 101 (133)
Q Consensus 96 ~a~~~~ 101 (133)
|.-|+-
T Consensus 439 yeGPkG 444 (577)
T PRK13016 439 NAGPQG 444 (577)
T ss_pred CCCCCC
Confidence 998886
No 201
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=30.00 E-value=27 Score=27.93 Aligned_cols=29 Identities=24% Similarity=0.322 Sum_probs=22.0
Q ss_pred CCHHHHHHHhhcCCCeeEEEEcCCCCCeE
Q 043011 34 VSYEAIGSVFSAFGDVKGIYAADDSGARV 62 (133)
Q Consensus 34 vte~~L~~~F~~fG~V~~v~~~~~~kg~a 62 (133)
+.+||+..+=..||+|.+|.+..+.++||
T Consensus 275 i~eEEigrvkGHFGPINsvAfhPdGksYs 303 (327)
T KOG0643|consen 275 IFEEEIGRVKGHFGPINSVAFHPDGKSYS 303 (327)
T ss_pred HHHHHhccccccccCcceeEECCCCcccc
Confidence 45677777788999999999866655553
No 202
>COG0225 MsrA Peptide methionine sulfoxide reductase [Posttranslational modification, protein turnover, chaperones]
Probab=28.72 E-value=2.4e+02 Score=20.82 Aligned_cols=95 Identities=14% Similarity=0.201 Sum_probs=50.5
Q ss_pred CCCCCCCCCCCCCCCCCCCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEcCCCCCeEE---EEECCHHHHHH---H
Q 043011 2 GAPSNSRFRRPKAGEDERSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAADDSGARVI---VSYFDEGSAQA---A 75 (133)
Q Consensus 2 ~~~~~~~f~~p~~~~~~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~~~~kg~af---V~f~~~~~A~~---A 75 (133)
|.-.||.|..--.+..--...+.|.-=+.- ++.++|-++|=+-=+-.+..--+..+|--| |-+.|.++.+. .
T Consensus 39 G~~~nptY~~Vcsg~TgHaE~V~V~yDp~~--isy~~LL~~ff~ihDPT~~nrQGnD~GtqYRs~Iy~~~~~q~~~a~~~ 116 (174)
T COG0225 39 GHTPNPTYEEVCSGTTGHAEAVEVTYDPKV--ISYEELLEVFFEIHDPTSLNRQGNDRGTQYRSAIYYTNEEQKAIAEAS 116 (174)
T ss_pred CCCCCCChhhccCCCCCceEEEEEEeCCcc--ccHHHHHHHHheecCCCCCCccCCcccccceeEEEEcCHHHHHHHHHH
Confidence 344555555433222223456667655566 899998877744322222221123334322 55566555444 4
Q ss_pred HHHhcCCCCCCCCCeeEEEEeeecCC
Q 043011 76 FNSLHSRPCPDLANRFLHISYSVLED 101 (133)
Q Consensus 76 ~~~l~g~~~~~l~gr~l~V~~a~~~~ 101 (133)
+++++... ..+++|.++...-++
T Consensus 117 ~~~~q~~~---~~~~~IvteI~p~~~ 139 (174)
T COG0225 117 IEELQASG---YFKKPIVTEIEPAKN 139 (174)
T ss_pred HHHHHHhc---cCCCCeEEEeecccc
Confidence 55665544 667888888776554
No 203
>smart00457 MACPF membrane-attack complex / perforin.
Probab=28.25 E-value=1.1e+02 Score=22.28 Aligned_cols=28 Identities=7% Similarity=0.135 Sum_probs=23.4
Q ss_pred EeccCCCCCCCHHHHHHHhhcCCC--eeEEEE
Q 043011 25 VANCGPAVGVSYEAIGSVFSAFGD--VKGIYA 54 (133)
Q Consensus 25 V~Nl~~~~~vte~~L~~~F~~fG~--V~~v~~ 54 (133)
+.+||.. .+..+...+|..||. |.++.+
T Consensus 30 l~~Lp~~--~~~~~~~~fi~~yGTH~i~s~~~ 59 (194)
T smart00457 30 LRDLPDQ--YNRGAYARFIDKYGTHYITSATL 59 (194)
T ss_pred HHhCccc--cCHHHHHHHHHHhCCeEEEeeee
Confidence 3467877 888899999999997 788877
No 204
>cd01611 GABARAP Ubiquitin domain of GABA-receptor-associated protein. GABARAP (GABA-receptor-associated protein) belongs ot a large family of proteins that mediate intracellular membrane trafficking and/or fusion. GABARAP binds not only to GABA, type A but also to tubulin, gephrin, and ULK1. Orthologues of GABARAP include Gate-16 (golgi-associated ATPase enhancer), LC3 (microtubule-associated protein light chain 3), and ATG8 (autophagy protein 8). ATG8 is a ubiquitin-like protein that is conjugated to the membrane phospholipid, phosphatidylethanolamine as part of a ubiquitin-like conjugation system essential for autophagosome-formation.
Probab=28.24 E-value=1e+02 Score=20.88 Aligned_cols=38 Identities=21% Similarity=0.351 Sum_probs=23.2
Q ss_pred CCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEcCCCCCeEEEEECCH
Q 043011 20 SPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAADDSGARVIVSYFDE 69 (133)
Q Consensus 20 ~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~~~~kg~afV~f~~~ 69 (133)
+=-|||+|.-+ -.+..+.+++.+|++ ..||-++.|.+.
T Consensus 71 slfl~Vn~~~p---~~~~~~~~lY~~~kd---------~DGfLyl~Ys~~ 108 (112)
T cd01611 71 ALFLFVNNSLP---PTSATMSQLYEEHKD---------EDGFLYMTYSSE 108 (112)
T ss_pred eEEEEECCccC---CchhHHHHHHHHhCC---------CCCEEEEEEecc
Confidence 34567777322 335667788888763 256777777543
No 205
>PF00313 CSD: 'Cold-shock' DNA-binding domain; InterPro: IPR002059 When Escherichia coli is exposed to a temperature drop from 37 to 10 degrees centigrade, a 4-5 hour lag phase occurs, after which growth is resumed at a reduced rate []. During the lag phase, the expression of around 13 proteins, which contain specific DNA-binding regions [], is increased 2-10 fold. These so-called 'cold shock' proteins are thought to help the cell to survive in temperatures lower than optimum growth temperature, by contrast with heat shock proteins, which help the cell to survive in temperatures greater than the optimum, possibly by condensation of the chromosome and organisation of the prokaryotic nucleoid []. A conserved domain of about 70 amino acids has been found in prokaryotic and eukaryotic DNA-binding proteins [, , ]. This domain is known as the 'cold-shock domain' (CSD), part of which is highly similar [] to the RNP-1 RNA-binding motif.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1HZC_A 1I5F_A 1HZ9_B 1C9O_B 1HZB_B 1HZA_A 2HAX_B 2L15_A 2LSS_A 3I2Z_B ....
Probab=28.13 E-value=57 Score=19.27 Aligned_cols=15 Identities=27% Similarity=0.304 Sum_probs=11.0
Q ss_pred CCCCCeEEEEECCHH
Q 043011 56 DDSGARVIVSYFDEG 70 (133)
Q Consensus 56 ~~~kg~afV~f~~~~ 70 (133)
...+||+||.-.+.+
T Consensus 9 ~~~kgyGFI~~~~~~ 23 (66)
T PF00313_consen 9 DDEKGYGFITSDDGG 23 (66)
T ss_dssp ETTTTEEEEEETTSS
T ss_pred ECCCCceEEEEcccc
Confidence 347899999886543
No 206
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=28.06 E-value=1.2e+02 Score=17.24 Aligned_cols=45 Identities=18% Similarity=0.155 Sum_probs=33.8
Q ss_pred eEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEcCCCCCeEEEEECCH
Q 043011 22 NLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAADDSGARVIVSYFDE 69 (133)
Q Consensus 22 ~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~~~~kg~afV~f~~~ 69 (133)
|+.|.|+.-. --...+++.+.+.-.|.++.+ .-..+-+-|.|...
T Consensus 1 t~~v~~m~C~--~C~~~v~~~l~~~~GV~~v~v-d~~~~~v~v~~~~~ 45 (62)
T PF00403_consen 1 TFKVPGMTCE--GCAKKVEKALSKLPGVKSVKV-DLETKTVTVTYDPD 45 (62)
T ss_dssp EEEEESTTSH--HHHHHHHHHHHTSTTEEEEEE-ETTTTEEEEEESTT
T ss_pred CEEECCcccH--HHHHHHHHHHhcCCCCcEEEE-ECCCCEEEEEEecC
Confidence 4667776644 667888999999988999988 44557888999754
No 207
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=27.24 E-value=1.5e+02 Score=19.17 Aligned_cols=48 Identities=15% Similarity=0.168 Sum_probs=29.6
Q ss_pred CCCCCeEEEeccCCCCCCCHHHHHHHhhcC--CCeeEEEEcCCCCCeEEEEE
Q 043011 17 DERSPNLFVANCGPAVGVSYEAIGSVFSAF--GDVKGIYAADDSGARVIVSY 66 (133)
Q Consensus 17 ~~~~~~L~V~Nl~~~~~vte~~L~~~F~~f--G~V~~v~~~~~~kg~afV~f 66 (133)
.+...-+||||++.. +.|.--..+.+.. |.+.=+.-.....||+|-+.
T Consensus 22 ~Ei~~GVyVg~~s~r--VRe~lW~~v~~~~~~G~a~m~~~~~neqG~~~~t~ 71 (86)
T PF09707_consen 22 LEIRPGVYVGNVSAR--VRERLWERVTEWIGDGSAVMVWSDNNEQGFDFRTL 71 (86)
T ss_pred EecCCCcEEcCCCHH--HHHHHHHHHHhhCCCccEEEEEccCCCCCEEEEEe
Confidence 356778999999987 6654434444432 33333333445778888776
No 208
>TIGR01873 cas_CT1978 CRISPR-associated endoribonuclease Cas2, E. coli subfamily. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model represents a minor branch of the Cas2 family of CRISPR-associated endonuclease, whereas most Cas2 proteins are modeled instead by TIGR01573. This form of Cas2 is characteristic for the Ecoli subtype of CRISPR/Cas locus.
Probab=27.18 E-value=1.1e+02 Score=20.05 Aligned_cols=49 Identities=10% Similarity=0.131 Sum_probs=31.4
Q ss_pred CCCCCeEEEeccCCCCCCCHHHHHHHhhcC----CCeeEEEEcCCCCCeEEEEECC
Q 043011 17 DERSPNLFVANCGPAVGVSYEAIGSVFSAF----GDVKGIYAADDSGARVIVSYFD 68 (133)
Q Consensus 17 ~~~~~~L~V~Nl~~~~~vte~~L~~~F~~f----G~V~~v~~~~~~kg~afV~f~~ 68 (133)
.+...-+|||+++.. +.| .|.+...+. |.+.=+.-.....||.|-++-+
T Consensus 22 lEv~~GVyVg~~s~r--VRe-~lW~~v~~~~~~~G~avm~~~~~~e~G~~~~t~G~ 74 (87)
T TIGR01873 22 LEPRAGVYVGGVSAS--VRE-RIWDYLAQHCPPKGSLVITWSSNTCPGFEFFTLGE 74 (87)
T ss_pred eecCCCcEEcCCCHH--HHH-HHHHHHHHhCCCCccEEEEEeCCCCCCcEEEecCC
Confidence 345778999998877 654 455444444 5555455555677888877643
No 209
>COG4733 Phage-related protein, tail component [Function unknown]
Probab=27.17 E-value=50 Score=30.30 Aligned_cols=66 Identities=9% Similarity=0.116 Sum_probs=47.6
Q ss_pred CeEEEeccCCCCCCCHHHHH--HHhhcCCCeeEEEEcCCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCeeEEE
Q 043011 21 PNLFVANCGPAVGVSYEAIG--SVFSAFGDVKGIYAADDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRFLHI 94 (133)
Q Consensus 21 ~~L~V~Nl~~~~~vte~~L~--~~F~~fG~V~~v~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~l~V 94 (133)
-++-+.-+.++ -+.+.|. .+.+.|++|.+++...++....+|++...+=- . .---..+ +.||+|+|
T Consensus 176 ~~vR~~R~T~d--s~s~~l~n~t~~~s~tEiID~k~~YPNtAlvgl~vdaeQFg-s--~~t~~y~---~rGrii~V 243 (952)
T COG4733 176 FNIRMRRETAD--STSDQLQNKTLWSSYTEIIDVKQCYPNTALVGLQVDAEQFG-G--QPTVNYH---IRGRIIQV 243 (952)
T ss_pred ceEEEEEecCC--CchhhhhcchhhhhhhheeeccccCCCceEEEEEEcHHHhC-C--cceeEEe---ecceEEeC
Confidence 56777778888 8888884 68899999999999888888889998533221 1 1111223 78999887
No 210
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=26.29 E-value=38 Score=26.98 Aligned_cols=18 Identities=22% Similarity=0.469 Sum_probs=16.0
Q ss_pred CCHHHHHHHhhcCCCeeE
Q 043011 34 VSYEAIGSVFSAFGDVKG 51 (133)
Q Consensus 34 vte~~L~~~F~~fG~V~~ 51 (133)
+++++|.++|..||+...
T Consensus 139 ~~~~~L~~i~~~yGee~~ 156 (296)
T PRK00050 139 YSEEELARIFKEYGEERF 156 (296)
T ss_pred CCHHHHHHHHHHhcCcch
Confidence 689999999999998754
No 211
>PF12993 DUF3877: Domain of unknown function, E. rectale Gene description (DUF3877); InterPro: IPR024539 This entry represents proteins of unknown function found primarily in Firmicutes. The Eubacterium rectale gene appears to be upregulated in the presence of Bacteroides thetaiotaomicron compared to growth in pure culture [].
Probab=26.13 E-value=1.1e+02 Score=22.58 Aligned_cols=16 Identities=31% Similarity=0.617 Sum_probs=14.8
Q ss_pred CCCHHHHHHHhhcCCC
Q 043011 33 GVSYEAIGSVFSAFGD 48 (133)
Q Consensus 33 ~vte~~L~~~F~~fG~ 48 (133)
++|-++++++|.+|++
T Consensus 108 gcT~e~I~~~F~~ys~ 123 (175)
T PF12993_consen 108 GCTLEDILELFHKYSD 123 (175)
T ss_pred CcCHHHHHHHHHHhcC
Confidence 3999999999999997
No 212
>COG5470 Uncharacterized conserved protein [Function unknown]
Probab=26.06 E-value=1.6e+02 Score=19.59 Aligned_cols=37 Identities=14% Similarity=0.270 Sum_probs=23.0
Q ss_pred HHHhhcCCC--------eeEEEEcCCCCCeEEEEECCHHHHHHHH
Q 043011 40 GSVFSAFGD--------VKGIYAADDSGARVIVSYFDEGSAQAAF 76 (133)
Q Consensus 40 ~~~F~~fG~--------V~~v~~~~~~kg~afV~f~~~~~A~~A~ 76 (133)
..+|++||- +..+.=.........|+|.|.+.|....
T Consensus 26 ~~a~~~~Ggr~LvRGG~v~~lEG~w~ptr~vviEFps~~~ar~~y 70 (96)
T COG5470 26 KPAIEKFGGRYLVRGGEVETLEGEWRPTRNVVIEFPSLEAARDCY 70 (96)
T ss_pred HHHHHHhCCeeEeeCCCeeeccCCCCcccEEEEEcCCHHHHHHHh
Confidence 467888873 2222211122457889999999887654
No 213
>TIGR00405 L26e_arch ribosomal protein L24p/L26e, archaeal. This protein contains a KOW domain, shared by bacterial NusG and the L24p/L26e family of ribosomal proteins. Although called archaeal NusG in several publications, it is the only close homolog of eukaryotic L26e in archaeal genomes, shares an operon with L11 in many genomes, and has been sequenced from purified ribosomes. It is here designated as a ribosomal protein for these reasons.
Probab=25.85 E-value=1.4e+02 Score=20.60 Aligned_cols=34 Identities=12% Similarity=0.057 Sum_probs=25.9
Q ss_pred eeEEEEcCCCCCeEEEEECCHHHHHHHHHHhcCC
Q 043011 49 VKGIYAADDSGARVIVSYFDEGSAQAAFNSLHSR 82 (133)
Q Consensus 49 V~~v~~~~~~kg~afV~f~~~~~A~~A~~~l~g~ 82 (133)
+.++.++..-+||-||+.....+...++..+.|.
T Consensus 28 ~~~~~vp~~fpGYvFV~~~~~~~~~~~i~~~~gv 61 (145)
T TIGR00405 28 VYSILAPESLKGYILVEAETKIDMRNPIIGVPHV 61 (145)
T ss_pred EEEEEccCCCCcEEEEEEECcHHHHHHHhCCCCE
Confidence 5566776678999999999777777777766553
No 214
>smart00773 WGR Proposed nucleic acid binding domain. This domain is named after its most conserved central motif. It is found in a variety of polyA polymerases as well as in molybdate metabolism regulators (e.g. in E.coli) and other proteins of unknown function. The domain is found in isolation in some proteins and is between 70 and 80 residues in length. It is proposed that it may be a nucleic acid binding domain.
Probab=25.42 E-value=71 Score=20.00 Aligned_cols=34 Identities=21% Similarity=0.386 Sum_probs=21.4
Q ss_pred HHhhcCCCeeEEEEcCCCCCeEEEEECCHHHHHHHHHHhc
Q 043011 41 SVFSAFGDVKGIYAADDSGARVIVSYFDEGSAQAAFNSLH 80 (133)
Q Consensus 41 ~~F~~fG~V~~v~~~~~~kg~afV~f~~~~~A~~A~~~l~ 80 (133)
.+|-+||.| +..-+.-...|.+.++|.++.+.+-
T Consensus 36 ~v~~~wGRi------G~~g~~~~~~~~s~~~A~~~f~k~~ 69 (84)
T smart00773 36 SVWRRWGRI------GTNGQTKLETFDSLEDAIKEFEKLF 69 (84)
T ss_pred EEEEEeeec------CCCCceeeEcCCCHHHHHHHHHHHH
Confidence 445555555 2222344567889999999887663
No 215
>cd01612 APG12_C Ubiquitin-like domain of APG12. APG12_C The carboxy-terminal ubiquitin-like domain of APG12. Autophagy is a process in which cytoplasmic components are delivered to the lysosome/vacuole for degradation. Autophagy requires a ubiquitin-like protein conjugation system, in which APG12 is covalently bound to APG5.
Probab=25.36 E-value=1.5e+02 Score=19.11 Aligned_cols=38 Identities=32% Similarity=0.662 Sum_probs=24.1
Q ss_pred CCCeEEEecc-CCCCCCCHHHHHHHhhcCCCeeEEEEcCCCCCeEEEEECCH
Q 043011 19 RSPNLFVANC-GPAVGVSYEAIGSVFSAFGDVKGIYAADDSGARVIVSYFDE 69 (133)
Q Consensus 19 ~~~~L~V~Nl-~~~~~vte~~L~~~F~~fG~V~~v~~~~~~kg~afV~f~~~ 69 (133)
.+=-|||+|- .+. .++.+.+++..|+ ..|+-+|.|.+.
T Consensus 45 ~slflyvnn~f~p~---~d~~~g~LY~~~~----------~dGfLyi~Ys~~ 83 (87)
T cd01612 45 DSLFLYINNSFAPS---PDENVGNLYRCFG----------TNGELIVSYCKT 83 (87)
T ss_pred CeEEEEECCccCCC---chhHHHHHHHhcC----------CCCEEEEEEeCc
Confidence 3456788883 443 4567778888874 146677777543
No 216
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=25.11 E-value=48 Score=26.17 Aligned_cols=25 Identities=16% Similarity=0.092 Sum_probs=22.3
Q ss_pred CCcceeEeeecCCCCCchhhhhhhc
Q 043011 107 HITSSVPVSLVASELNIPGLHSCFM 131 (133)
Q Consensus 107 ~~~~~l~v~nl~~~~~~~~l~~~f~ 131 (133)
...|-+++++||+.++.-.||+|+.
T Consensus 72 rk~GVvylS~IPp~m~~~rlReil~ 96 (278)
T KOG3152|consen 72 RKTGVVYLSNIPPYMDPVRLREILS 96 (278)
T ss_pred ccceEEEeccCCCccCHHHHHHHHH
Confidence 3668899999999999999999975
No 217
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=24.50 E-value=42 Score=26.90 Aligned_cols=18 Identities=22% Similarity=0.349 Sum_probs=16.0
Q ss_pred CCHHHHHHHhhcCCCeeE
Q 043011 34 VSYEAIGSVFSAFGDVKG 51 (133)
Q Consensus 34 vte~~L~~~F~~fG~V~~ 51 (133)
.++++|.++|..||+...
T Consensus 141 ~~e~~L~~i~~~yGEe~~ 158 (305)
T TIGR00006 141 YSEEDLERILKKYGEEKF 158 (305)
T ss_pred CCHHHHHHHHHHhcCcch
Confidence 789999999999998754
No 218
>PF02518 HATPase_c: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; InterPro: IPR003594 This domain is found in several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases [], heat shock protein HSP90 [, , ], phytochrome-like ATPases and DNA mismatch repair proteins. The fold of this domain consists of two layers, alpha/beta, which contains an 8-stranded mixed beta-sheet. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0005524 ATP binding; PDB: 3JZ3_A 3DGE_A 2C2A_A 2BU5_A 2BU8_A 2BU6_A 2BU7_A 2BU2_A 2BTZ_A 3K99_D ....
Probab=24.09 E-value=1.1e+02 Score=19.49 Aligned_cols=28 Identities=14% Similarity=0.288 Sum_probs=21.5
Q ss_pred CeEEEeccCCCCCCCHHHHHHHhhcCCCee
Q 043011 21 PNLFVANCGPAVGVSYEAIGSVFSAFGDVK 50 (133)
Q Consensus 21 ~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~ 50 (133)
-.|-|.|-+.. +++++|..+|.++-.-.
T Consensus 38 ~~i~i~d~G~g--i~~~~l~~~~~~~~~~~ 65 (111)
T PF02518_consen 38 LSIEISDNGVG--IPPEELEKLFEPFFTSD 65 (111)
T ss_dssp EEEEEEESSSS--TTHHHHHHHCSTTSHSS
T ss_pred EEEEEEecccc--ccccccccchhhccccc
Confidence 45666776666 99999999999886443
No 219
>PHA02104 hypothetical protein
Probab=24.07 E-value=87 Score=19.87 Aligned_cols=35 Identities=17% Similarity=0.257 Sum_probs=26.2
Q ss_pred CCeEEEeccCCCCCCCHHHHH-HHhhcCCCeeEEEEcCCCC
Q 043011 20 SPNLFVANCGPAVGVSYEAIG-SVFSAFGDVKGIYAADDSG 59 (133)
Q Consensus 20 ~~~L~V~Nl~~~~~vte~~L~-~~F~~fG~V~~v~~~~~~k 59 (133)
.+++.|.-|+ ++.|+++ .+|=.|-.|.+|++ +.++
T Consensus 17 g~ni~vnlls----td~eqik~ti~w~fp~i~ev~i-g~s~ 52 (89)
T PHA02104 17 GRNIHVNLLS----TDPEQVKSTIFWTFPGITEVRI-GSST 52 (89)
T ss_pred CCceEEEEec----CCHHHhheEEEEecCCcEEEEe-ccee
Confidence 5677776665 5688887 58899999999988 4444
No 220
>PF14893 PNMA: PNMA
Probab=23.91 E-value=60 Score=26.35 Aligned_cols=49 Identities=12% Similarity=0.240 Sum_probs=30.1
Q ss_pred CCCCCeEEEeccCCCCCCCHHHHHHH----hhcCCCe---eEEEEcCCCCCeEEEEEC
Q 043011 17 DERSPNLFVANCGPAVGVSYEAIGSV----FSAFGDV---KGIYAADDSGARVIVSYF 67 (133)
Q Consensus 17 ~~~~~~L~V~Nl~~~~~vte~~L~~~----F~~fG~V---~~v~~~~~~kg~afV~f~ 67 (133)
..+.+.|.|..||.+ ++++|+++. +...|.- ..++....+.--|+|+|.
T Consensus 15 ~~~~r~lLv~giP~d--c~~~ei~e~l~~~l~plg~yrvl~~~f~~~~~~~aalve~~ 70 (331)
T PF14893_consen 15 VDPQRALLVLGIPED--CEEAEIEEALQAALSPLGRYRVLGKMFRREENAKAALVEFA 70 (331)
T ss_pred cChhhhheeecCCCC--CCHHHHHHHHHHhhcccccceehhhHhhhhcccceeeeecc
Confidence 345788999999999 998888764 4444532 222221223334667774
No 221
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=23.50 E-value=51 Score=27.66 Aligned_cols=23 Identities=13% Similarity=0.143 Sum_probs=20.7
Q ss_pred ceeEeeecCCCCCchhhhhhhcc
Q 043011 110 SSVPVSLVASELNIPGLHSCFMT 132 (133)
Q Consensus 110 ~~l~v~nl~~~~~~~~l~~~f~~ 132 (133)
++|+|.|||+..+...|.+.|+.
T Consensus 289 ~~i~V~nlP~da~~~~l~~~Fk~ 311 (419)
T KOG0116|consen 289 LGIFVKNLPPDATPAELEEVFKQ 311 (419)
T ss_pred cceEeecCCCCCCHHHHHHHHhh
Confidence 45999999999999999999974
No 222
>cd08757 SAM_PNT_ESE Sterile alpha motif (SAM)/Pointed domain of ESE-like ETS transcriptional regulators. SAM Pointed domain of ESE-like (Epithelium-Specific ETS) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. It can act as a major transactivator by providing a potential docking site for co-activators. ETS factors are important for cell differentiation. They can be involved in regulation of gene expression in different types of epithelial cells. They are expressed in salivary gland, intestine, stomach, pancreas, lungs, kidneys, colon, mammary gland, and prostate. Members of this group are proto-oncogenes. Expression profiles of these factors are altered in epithelial cancers, which makes them potential targets for cancer therapy.
Probab=23.37 E-value=40 Score=20.74 Aligned_cols=18 Identities=11% Similarity=0.333 Sum_probs=15.3
Q ss_pred CCCCHHHHHHHhhcCCCe
Q 043011 32 VGVSYEAIGSVFSAFGDV 49 (133)
Q Consensus 32 ~~vte~~L~~~F~~fG~V 49 (133)
|.+|++|..+.+..+|+|
T Consensus 41 C~ms~edF~~~~p~~Gdi 58 (68)
T cd08757 41 CSMTEEEFREAAGSYGSL 58 (68)
T ss_pred HcCCHHHHHHHcCCcHHH
Confidence 458899999999889976
No 223
>PF01823 MACPF: MAC/Perforin domain; InterPro: IPR020864 The membrane attack complex/perforin (MACPF) domain is conserved in bacteria, fungi, mammals and plants. It was originally identified and named as being common to five complement components (C6, C7, C8-alpha, C8-beta, and C9) and perforin. These molecules perform critical functions in innate and adaptive immunity. The MAC family proteins and perforin are known to participate in lytic pore formation. In response to pathogen infection, a sequential and highly specific interaction between the constituent elements occurs to form transmembrane channels which are known as the membrane-attack complex (MAC).Only a few other MACPF proteins have been characterised and several are thought to form pores for invasion or protection [, , ]. Examples are proteins from malarial parasites [], the cytolytic toxins from sea anemones [], and proteins that provide plant immunity [, ]. Functionally uncharacterised MACPF proteins are also evident in pathogenic bacteria such as Chlamydia spp [] and Photorhabdus luminescens (Xenorhabdus luminescens) []. The MACPF domain is commonly found to be associated with other N- and C-terminal domains, such as TSP1 (see PDOC50092 from PROSITEDOC), LDLRA (see PDOC00929 from PROSITEDOC), EGF-like (see PDOC00021 from PROSITEDOC),Sushi/CCP/SCR (see PDOC50923 from PROSITEDOC), FIMAC or C2 (see PDOC00380 from PROSITEDOC). They probably control or target MACPF function [, ]. The MACPF domain oligomerizes, undergoes conformational change, and is required for lytic activity. The MACPF domain consists of a central kinked four-stranded antiparallel beta sheet surrounded by alpha helices and beta strands, forming two structural segments. Overall, the MACPF domain has a thin L-shaped appearance. MACPF domains exhibit limited sequence similarity but contain a signature [YW]-G-[TS]-H-[FY]-x(6)-G-G motif [, , ]. Some proteins known to contain a MACPF domain are listed below: Vertebrate complement proteins C6 to C9. Complement factors C6 to C9 assemble to form a scaffold, the membrane attack complex (MAC), that permits C9 polymerisation into pores that lyse Gram-negative pathogens [, ]. Vertebrate perforin. It is delivered by natural killer cells and cytotoxic T lymphocytes and forms oligomeric pores (12 to 18 monomers) in the plasma membrane of either virus-infected or transformed cells. Arabidopsis thaliana (Mouse-ear cress) constitutively activated cell death 1 (CAD1) protein. It is likely to act as a mediator that recognises plant signals for pathogen infection []. Arabidopsis thaliana (Mouse-ear cress) necrotic spotted lesions 1 (NSL1) protein []. Venomous sea anemone Phyllodiscus semoni (Night anemone) toxins PsTX-60A and PsTX-60B []. Venomous sea anemone Actineria villosa (Okinawan sea anemone) toxin AvTX-60A []. Plasmodium sporozoite microneme protein essential for cell traversal 2 (SPECT2). It is essential for the membrane-wounding activity of the sporozoite and is involved in its traversal of the sinusoidal cell layer prior to hepatocyte-infection []. P. luminescens Plu-MACPF. Although nonlytic, it was shown to bind to cell membranes []. Chlamydial putative uncharacterised protein CT153 []. ; PDB: 2QP2_A 3OJY_B 3NSJ_A 4E0S_B 3T5O_A 4A5W_B 2QQH_A 2RD7_A.
Probab=23.33 E-value=40 Score=24.28 Aligned_cols=28 Identities=11% Similarity=0.199 Sum_probs=19.1
Q ss_pred EeccCCCCCCCHHH---HHHHhhcCCC--eeEEEE
Q 043011 25 VANCGPAVGVSYEA---IGSVFSAFGD--VKGIYA 54 (133)
Q Consensus 25 V~Nl~~~~~vte~~---L~~~F~~fG~--V~~v~~ 54 (133)
|.+|+.. .+.++ ..++|..||. |.++.+
T Consensus 53 l~~L~~~--~~~~~~~~y~~f~~~yGTH~v~~~~l 85 (212)
T PF01823_consen 53 LNALPAE--YNSDNTDEYYRFFDKYGTHYVTSVTL 85 (212)
T ss_dssp HHTSHSS----HHHHHHHHHHHHHH-SEEEEEEEE
T ss_pred HHhhCcc--cCccchHHHHHHHHHhCcEEEEEEEE
Confidence 4557777 77777 7789999997 677777
No 224
>PRK09937 stationary phase/starvation inducible regulatory protein CspD; Provisional
Probab=23.02 E-value=82 Score=19.66 Aligned_cols=12 Identities=0% Similarity=-0.119 Sum_probs=8.6
Q ss_pred CCCCCeEEEEEC
Q 043011 56 DDSGARVIVSYF 67 (133)
Q Consensus 56 ~~~kg~afV~f~ 67 (133)
...|||+||+=.
T Consensus 10 n~~KGfGFI~~~ 21 (74)
T PRK09937 10 NNAKGFGFICPE 21 (74)
T ss_pred eCCCCeEEEeeC
Confidence 457899888654
No 225
>PF11181 YflT: Heat induced stress protein YflT
Probab=22.86 E-value=1.2e+02 Score=19.80 Aligned_cols=28 Identities=18% Similarity=0.205 Sum_probs=22.8
Q ss_pred EEECCHHHHHHHHHHhcCCCCCCCCCeeEEE
Q 043011 64 VSYFDEGSAQAAFNSLHSRPCPDLANRFLHI 94 (133)
Q Consensus 64 V~f~~~~~A~~A~~~l~g~~~~~l~gr~l~V 94 (133)
-.|.+.++|..|++.|...- +...-|.|
T Consensus 4 gv~~~~~E~~~~I~~L~~~G---y~~ddI~V 31 (103)
T PF11181_consen 4 GVYDNEEEALSAIEELKAQG---YSEDDIYV 31 (103)
T ss_pred EEECCHHHHHHHHHHHHHcC---CCcccEEE
Confidence 35899999999999998766 66777766
No 226
>PRK12450 foldase protein PrsA; Reviewed
Probab=22.86 E-value=1.9e+02 Score=22.89 Aligned_cols=38 Identities=21% Similarity=0.351 Sum_probs=29.9
Q ss_pred CCHHHHHHHhhcCCCeeEEEEcCCCCCeEEEEECCHHHHHHHHHHhc
Q 043011 34 VSYEAIGSVFSAFGDVKGIYAADDSGARVIVSYFDEGSAQAAFNSLH 80 (133)
Q Consensus 34 vte~~L~~~F~~fG~V~~v~~~~~~kg~afV~f~~~~~A~~A~~~l~ 80 (133)
+|++|++..+..|.+ .+.+ ..|.+.+.+.|+.+++.|.
T Consensus 133 Vtd~evk~~y~~~~~--~~~~-------~~I~~~~~~~A~~i~~~l~ 170 (309)
T PRK12450 133 ISKKDYRQAYDAYTP--TMTA-------EIMQFEKEEDAKAALEAVK 170 (309)
T ss_pred CCHHHHHHHHHHhCc--ccee-------EEEEeCCHHHHHHHHHHHH
Confidence 899999999998843 2222 2477889999999999985
No 227
>cd08538 SAM_PNT-ESE-2-like Sterile alpha motif (SAM)/Pointed domain of ESE-2 like ETS transcriptional regulators. SAM Pointed domain of ESE-2-like (Epithelium-Specific ETS) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. It can act as a major transactivator by providing a potential docking site for co-activators. ESE-2 factors are involved in regulation of gene expression in a variety of epithelial (glandular and secretory) cells. ESE-2 mRNA was found in skin keratinocytes, salivary gland, mammary gland, stomach, prostate, and kidneys. The DNA binding consensus motif for ESE-2 consists of a GGA core and AT-rich flanks. The expression profiles of these factors are altered in epithelial cancers. Members of this subfamily are potential targets for cancer therapy.
Probab=22.36 E-value=45 Score=21.31 Aligned_cols=18 Identities=11% Similarity=0.130 Sum_probs=15.7
Q ss_pred CCCCHHHHHHHhhcCCCe
Q 043011 32 VGVSYEAIGSVFSAFGDV 49 (133)
Q Consensus 32 ~~vte~~L~~~F~~fG~V 49 (133)
|.++.||..+++..+|+|
T Consensus 46 C~ms~eeF~~~~p~~Gdv 63 (78)
T cd08538 46 CSMTQEEFIEAAGICGEY 63 (78)
T ss_pred HcCCHHHHHHHcccchHH
Confidence 558899999999999986
No 228
>KOG1134 consensus Uncharacterized conserved protein [General function prediction only]
Probab=22.30 E-value=1.5e+02 Score=26.81 Aligned_cols=39 Identities=10% Similarity=-0.012 Sum_probs=29.1
Q ss_pred CCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCeeEEEEeeecC
Q 043011 57 DSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRFLHISYSVLE 100 (133)
Q Consensus 57 ~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~l~V~~a~~~ 100 (133)
+..+.|||+|.+...|+.|.+..++.. -....+++|...
T Consensus 303 ~~~~~aFVtf~sr~~A~~~aq~~~~~~-----~~~w~~~~APeP 341 (728)
T KOG1134|consen 303 KPLPAAFVTFKSRYGAAVAAQTQQSLN-----PTKWLTEFAPEP 341 (728)
T ss_pred CCCceEEEEEEeeHHHHHHHHhhhcCC-----CCceEEEecCCc
Confidence 457899999999999999988655444 355667777544
No 229
>PRK15464 cold shock-like protein CspH; Provisional
Probab=22.30 E-value=77 Score=19.59 Aligned_cols=13 Identities=15% Similarity=0.153 Sum_probs=9.5
Q ss_pred CCCCCeEEEEECC
Q 043011 56 DDSGARVIVSYFD 68 (133)
Q Consensus 56 ~~~kg~afV~f~~ 68 (133)
...|||+||+=.+
T Consensus 13 n~~KGfGFI~~~~ 25 (70)
T PRK15464 13 DRKSGKGFIIPSD 25 (70)
T ss_pred ECCCCeEEEccCC
Confidence 4578999887654
No 230
>cd07996 WGR_MMR_like WGR domain of molybdate metabolism regulator and related proteins. The WGR domain is found in the putative Escherichia coli molybdate metabolism regulator and related bacterial proteins, as well as in various other bacterial proteins of unknown function. It has been called WGR after the most conserved central motif of the domain. The domain appears to occur in single-domain proteins and in a variety of domain architectures, together with ATP-dependent DNA ligase domains, WD40 repeats, leucine-rich repeats, and other domains. It has been proposed to function as a nucleic acid binding domain.
Probab=22.28 E-value=1.3e+02 Score=18.23 Aligned_cols=20 Identities=20% Similarity=0.109 Sum_probs=15.7
Q ss_pred CeEEEEECCHHHHHHHHHHh
Q 043011 60 ARVIVSYFDEGSAQAAFNSL 79 (133)
Q Consensus 60 g~afV~f~~~~~A~~A~~~l 79 (133)
+.-...|.+.++|.++.+.+
T Consensus 43 q~~~~~~~s~~~A~~~~~k~ 62 (74)
T cd07996 43 QSRTKTFDSEEEALKAAEKL 62 (74)
T ss_pred ceEEEECCCHHHHHHHHHHH
Confidence 34567789999999988766
No 231
>PF01071 GARS_A: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; InterPro: IPR020561 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the A-domain of the enzyme, and is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase.; PDB: 1GSO_A 3LP8_A 2IP4_A 1VKZ_A 2QK4_A 2XD4_A 2XCL_A 3MJF_A 2YRW_A 2YS6_A ....
Probab=22.07 E-value=3.4e+02 Score=20.22 Aligned_cols=47 Identities=19% Similarity=0.105 Sum_probs=29.6
Q ss_pred CCHHHHHHHhhcCCCee-EEEEcCCCCCeEEEEECCHHHHHHHHHHhc
Q 043011 34 VSYEAIGSVFSAFGDVK-GIYAADDSGARVIVSYFDEGSAQAAFNSLH 80 (133)
Q Consensus 34 vte~~L~~~F~~fG~V~-~v~~~~~~kg~afV~f~~~~~A~~A~~~l~ 80 (133)
.+.++.++...+++.-. -|+..+-..|-+-+...+.++|..|++.+-
T Consensus 24 ~~~~~A~~~l~~~~~p~~ViKadGla~GKGV~i~~~~~eA~~~l~~~~ 71 (194)
T PF01071_consen 24 TDYEEALEYLEEQGYPYVVIKADGLAAGKGVVIADDREEALEALREIF 71 (194)
T ss_dssp SSHHHHHHHHHHHSSSEEEEEESSSCTTTSEEEESSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhcCCCceEEccCCCCCCCEEEEeCCHHHHHHHHHHhc
Confidence 35667777777766422 344333333333555699999999998874
No 232
>PF12631 GTPase_Cys_C: Catalytic cysteine-containing C-terminus of GTPase, MnmE; PDB: 1XZQ_A 1XZP_A 2GJ8_D 3GEH_A 3GEI_B 3GEE_A.
Probab=21.82 E-value=73 Score=19.56 Aligned_cols=13 Identities=31% Similarity=0.690 Sum_probs=9.6
Q ss_pred CCHHHHHHHhhcC
Q 043011 34 VSYEAIGSVFSAF 46 (133)
Q Consensus 34 vte~~L~~~F~~f 46 (133)
.+++-|..+|++|
T Consensus 60 ~~ediLd~IFs~F 72 (73)
T PF12631_consen 60 VTEDILDNIFSNF 72 (73)
T ss_dssp --HHHHHHHHCTS
T ss_pred ChHHHHHHHHHhh
Confidence 6777788999987
No 233
>cd04458 CSP_CDS Cold-Shock Protein (CSP) contains an S1-like cold-shock domain (CSD) that is found in eukaryotes, prokaryotes, and archaea. CSP's include the major cold-shock proteins CspA and CspB in bacteria and the eukaryotic gene regulatory factor Y-box protein. CSP expression is up-regulated by an abrupt drop in growth temperature. CSP's are also expressed under normal condition at lower level. The function of cold-shock proteins is not fully understood. They preferentially bind poly-pyrimidine region of single-stranded RNA and DNA. CSP's are thought to bind mRNA and regulate ribosomal translation, mRNA degradation, and the rate of transcription termination. The human Y-box protein, which contains a CSD, regulates transcription and translation of genes that contain the Y-box sequence in their promoters. This specific ssDNA-binding properties of CSD are required for the binding of Y-box protein to the promoter's Y-box sequence, thereby regulating transcription.
Probab=20.97 E-value=88 Score=18.35 Aligned_cols=19 Identities=32% Similarity=0.272 Sum_probs=12.4
Q ss_pred CCeeEEEEcCCCCCeEEEEECC
Q 043011 47 GDVKGIYAADDSGARVIVSYFD 68 (133)
Q Consensus 47 G~V~~v~~~~~~kg~afV~f~~ 68 (133)
|.|+.. ...+||+||.=.+
T Consensus 3 G~Vk~~---~~~kGfGFI~~~~ 21 (65)
T cd04458 3 GTVKWF---DDEKGFGFITPDD 21 (65)
T ss_pred EEEEEE---ECCCCeEEEecCC
Confidence 445433 3468999988765
No 234
>PRK09507 cspE cold shock protein CspE; Reviewed
Probab=20.87 E-value=92 Score=19.02 Aligned_cols=13 Identities=15% Similarity=0.087 Sum_probs=9.4
Q ss_pred CCCCCeEEEEECC
Q 043011 56 DDSGARVIVSYFD 68 (133)
Q Consensus 56 ~~~kg~afV~f~~ 68 (133)
...|||+||+=.+
T Consensus 12 ~~~kGyGFI~~~~ 24 (69)
T PRK09507 12 NESKGFGFITPED 24 (69)
T ss_pred eCCCCcEEEecCC
Confidence 4578999887654
No 235
>PRK14998 cold shock-like protein CspD; Provisional
Probab=20.51 E-value=96 Score=19.27 Aligned_cols=13 Identities=0% Similarity=-0.107 Sum_probs=9.1
Q ss_pred CCCCCeEEEEECC
Q 043011 56 DDSGARVIVSYFD 68 (133)
Q Consensus 56 ~~~kg~afV~f~~ 68 (133)
...|||+||+=.+
T Consensus 10 n~~kGfGFI~~~~ 22 (73)
T PRK14998 10 NNAKGFGFICPEG 22 (73)
T ss_pred eCCCceEEEecCC
Confidence 4478888886644
No 236
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=20.28 E-value=2.8e+02 Score=23.64 Aligned_cols=47 Identities=13% Similarity=0.114 Sum_probs=32.9
Q ss_pred HHHHHHHhh----cCCCeeEEEEc----CCCCCeEEEEECCHHHHHHHHHHhcCC
Q 043011 36 YEAIGSVFS----AFGDVKGIYAA----DDSGARVIVSYFDEGSAQAAFNSLHSR 82 (133)
Q Consensus 36 e~~L~~~F~----~fG~V~~v~~~----~~~kg~afV~f~~~~~A~~A~~~l~g~ 82 (133)
.-+|..+|- .+|-|.++.+. .+.+...++.|.+.++|..|+..+...
T Consensus 203 g~dl~~l~~Gs~GtlGIIt~atlkl~p~p~~~~~~~~~f~~~~~a~~~~~~~~~~ 257 (499)
T PRK11230 203 GFDLLALFTGSEGMLGVVTEVTVKLLPKPPVARVLLASFDSVEKAGLAVGDIIAA 257 (499)
T ss_pred ccchHhhhccCCCccEEEEEEEEEEEcCCcceEEEEEECCCHHHHHHHHHHHHhc
Confidence 346666654 56778777652 234456778999999999999887543
No 237
>PF09902 DUF2129: Uncharacterized protein conserved in bacteria (DUF2129); InterPro: IPR016979 This is a group of uncharacterised conserved proteins.
Probab=20.22 E-value=2.4e+02 Score=17.64 Aligned_cols=39 Identities=21% Similarity=0.316 Sum_probs=27.8
Q ss_pred HHhhcCCCeeEEEEcCCCCCeEEEEECCHHHHHHHHHHhcCCC
Q 043011 41 SVFSAFGDVKGIYAADDSGARVIVSYFDEGSAQAAFNSLHSRP 83 (133)
Q Consensus 41 ~~F~~fG~V~~v~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~ 83 (133)
.-..+||.|.-+. +...|+ |-|-|.++++..++.|....
T Consensus 15 r~L~kfG~i~Y~S---kk~kYv-vlYvn~~~~e~~~~kl~~l~ 53 (71)
T PF09902_consen 15 RQLRKFGDIHYVS---KKMKYV-VLYVNEEDVEEIIEKLKKLK 53 (71)
T ss_pred HhHhhcccEEEEE---CCccEE-EEEECHHHHHHHHHHHhcCC
Confidence 3467899986552 234455 56779999999999887655
No 238
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=20.11 E-value=68 Score=21.91 Aligned_cols=73 Identities=14% Similarity=0.092 Sum_probs=41.7
Q ss_pred CCeEEEeccCCCCCCCHHHHHH----HhhcCCCeeEEEEcCCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCeeEEEE
Q 043011 20 SPNLFVANCGPAVGVSYEAIGS----VFSAFGDVKGIYAADDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRFLHIS 95 (133)
Q Consensus 20 ~~~L~V~Nl~~~~~vte~~L~~----~F~~fG~V~~v~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~l~V~ 95 (133)
.+...||.+-..-..+-..|.+ +....|.+.=..+ ..++..+.|.+.+++..+++. .... +.|..+.++
T Consensus 15 ~~~~lVg~~l~~~~~~~~~l~~~l~~~W~~~~~~~i~~l---~~~~fl~~F~~~~d~~~vl~~-~p~~---~~~~~~~l~ 87 (153)
T PF14111_consen 15 WQLCLVGRVLSPKPISLSALEQELAKIWKLKGGVKIRDL---GDNLFLFQFESEEDRQRVLKG-GPWN---FNGHFLILQ 87 (153)
T ss_pred cCeEEEEEECCCCCCCHHHHHHHHHHHhCCCCcEEEEEe---CCCeEEEEEEeccceeEEEec-cccc---ccccchhhh
Confidence 3445566663221255555544 4444554443334 678999999999999887651 1122 566666655
Q ss_pred eeec
Q 043011 96 YSVL 99 (133)
Q Consensus 96 ~a~~ 99 (133)
--.+
T Consensus 88 ~W~~ 91 (153)
T PF14111_consen 88 RWSP 91 (153)
T ss_pred hhcc
Confidence 4443
No 239
>PRK10943 cold shock-like protein CspC; Provisional
Probab=20.09 E-value=95 Score=18.95 Aligned_cols=13 Identities=15% Similarity=0.128 Sum_probs=9.5
Q ss_pred CCCCCeEEEEECC
Q 043011 56 DDSGARVIVSYFD 68 (133)
Q Consensus 56 ~~~kg~afV~f~~ 68 (133)
...|||+||+=.+
T Consensus 12 ~~~kGfGFI~~~~ 24 (69)
T PRK10943 12 NESKGFGFITPAD 24 (69)
T ss_pred eCCCCcEEEecCC
Confidence 4578999987654
Done!