Query 043011
Match_columns 133
No_of_seqs 180 out of 1101
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 20:55:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043011.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043011hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tyt_A Heterogeneous nuclear r 99.9 2.7E-25 9.1E-30 165.1 13.2 110 18-132 2-146 (205)
2 4f25_A Polyadenylate-binding p 99.9 1.5E-25 5E-30 152.3 8.4 101 19-124 4-112 (115)
3 1b7f_A Protein (SXL-lethal pro 99.9 5.1E-24 1.8E-28 150.3 11.9 106 19-132 2-112 (168)
4 1fxl_A Paraneoplastic encephal 99.9 4.9E-24 1.7E-28 149.8 11.5 106 19-132 1-111 (167)
5 4f02_A Polyadenylate-binding p 99.9 2.1E-24 7.3E-29 159.9 9.3 110 17-132 12-126 (213)
6 3md3_A Nuclear and cytoplasmic 99.9 9.1E-24 3.1E-28 148.3 11.1 106 21-132 1-110 (166)
7 4fxv_A ELAV-like protein 1; RN 99.9 7.3E-24 2.5E-28 140.9 9.5 80 15-99 14-98 (99)
8 2adc_A Polypyrimidine tract-bi 99.9 4.6E-23 1.6E-27 154.2 13.5 112 16-132 30-174 (229)
9 3sde_A Paraspeckle component 1 99.9 4.4E-23 1.5E-27 157.1 11.9 112 6-132 8-119 (261)
10 2cq1_A PTB-like protein L; RRM 99.9 1.3E-22 4.4E-27 135.8 12.6 80 16-101 11-92 (101)
11 3r27_A HnRNP L, heterogeneous 99.9 3.7E-23 1.3E-27 138.5 9.9 82 16-101 17-98 (100)
12 2hvz_A Splicing factor, argini 99.9 2.3E-23 8E-28 137.6 8.8 94 21-119 1-101 (101)
13 1sjq_A Polypyrimidine tract-bi 99.9 2.6E-23 9E-28 140.4 8.1 81 15-101 11-93 (105)
14 1l3k_A Heterogeneous nuclear r 99.9 5.4E-23 1.9E-27 148.5 10.3 111 16-132 9-127 (196)
15 1why_A Hypothetical protein ri 99.9 2.1E-22 7.3E-27 132.2 12.2 80 16-101 13-94 (97)
16 3s8s_A Histone-lysine N-methyl 99.9 5.8E-23 2E-27 139.0 9.4 81 16-101 2-87 (110)
17 1qm9_A Polypyrimidine tract-bi 99.9 1.5E-22 5.2E-27 147.2 11.7 109 19-132 2-143 (198)
18 3nmr_A Cugbp ELAV-like family 99.9 1.1E-22 3.8E-27 144.1 10.6 110 19-132 2-118 (175)
19 3pgw_A U1-A; protein-RNA compl 99.9 4.1E-22 1.4E-26 152.1 14.0 81 16-101 5-91 (282)
20 2ad9_A Polypyrimidine tract-bi 99.9 1.8E-22 6E-27 139.1 10.6 81 15-101 26-108 (119)
21 2cpj_A Non-POU domain-containi 99.9 4.1E-22 1.4E-26 131.3 11.9 82 14-101 9-90 (99)
22 1x4d_A Matrin 3; structural ge 99.9 2.2E-22 7.4E-27 135.1 10.6 82 16-101 11-93 (102)
23 2g4b_A Splicing factor U2AF 65 99.9 1.7E-22 5.8E-27 143.2 10.0 105 18-132 2-117 (172)
24 2e5j_A Methenyltetrahydrofolat 99.9 4.1E-22 1.4E-26 131.0 11.0 87 10-101 9-95 (97)
25 1whw_A Hypothetical protein ri 99.9 6E-22 2.1E-26 130.2 11.6 82 16-102 4-90 (99)
26 2qfj_A FBP-interacting repress 99.9 2.9E-22 9.8E-27 146.7 11.1 109 19-132 27-148 (216)
27 2dnz_A Probable RNA-binding pr 99.9 1.1E-21 3.8E-26 127.9 12.6 80 17-101 2-86 (95)
28 2dnm_A SRP46 splicing factor; 99.9 6.6E-22 2.3E-26 131.0 11.6 81 16-101 9-94 (103)
29 1x4h_A RNA-binding protein 28; 99.9 8.9E-22 3.1E-26 131.7 12.3 83 15-102 10-103 (111)
30 2cqi_A Nucleolysin TIAR; RNA r 99.9 8.4E-22 2.9E-26 130.5 11.9 82 16-102 11-95 (103)
31 2cpz_A CUG triplet repeat RNA- 99.9 5.3E-22 1.8E-26 134.0 11.0 82 15-101 20-106 (115)
32 1x4a_A Splicing factor, argini 99.9 1.7E-21 5.7E-26 130.5 13.3 81 16-101 18-100 (109)
33 2wbr_A GW182, gawky, LD47780P; 99.9 2.4E-22 8E-27 131.7 8.7 75 18-98 5-79 (89)
34 2dnq_A RNA-binding protein 4B; 99.9 8.7E-22 3E-26 127.7 11.2 78 16-101 4-81 (90)
35 2cph_A RNA binding motif prote 99.9 2.2E-21 7.4E-26 129.1 13.3 82 16-102 11-99 (107)
36 3bs9_A Nucleolysin TIA-1 isofo 99.9 2.5E-22 8.7E-27 128.9 8.4 78 18-100 4-86 (87)
37 2lxi_A RNA-binding protein 10; 99.9 8.7E-23 3E-27 133.5 6.3 77 20-101 1-84 (91)
38 2cq3_A RNA-binding protein 9; 99.9 1.9E-21 6.5E-26 128.8 12.9 81 16-101 11-94 (103)
39 2x1f_A MRNA 3'-END-processing 99.9 5.3E-22 1.8E-26 130.1 9.9 78 19-101 1-83 (96)
40 1x5u_A Splicing factor 3B subu 99.9 1.5E-21 5.3E-26 129.5 12.2 81 16-101 11-96 (105)
41 2dgs_A DAZ-associated protein 99.9 2.4E-21 8.2E-26 127.5 13.0 80 16-101 6-90 (99)
42 2do4_A Squamous cell carcinoma 99.9 9.2E-22 3.2E-26 129.7 10.9 81 16-101 13-97 (100)
43 1p27_B RNA-binding protein 8A; 99.9 4.2E-22 1.4E-26 132.5 9.3 82 16-102 19-105 (106)
44 2d9p_A Polyadenylate-binding p 99.9 1.5E-21 5E-26 129.4 11.8 82 16-102 11-95 (103)
45 2yh0_A Splicing factor U2AF 65 99.9 6.4E-22 2.2E-26 143.1 10.9 108 18-132 2-137 (198)
46 2cjk_A Nuclear polyadenylated 99.9 9.2E-23 3.1E-27 144.0 6.2 104 19-132 2-110 (167)
47 1x5s_A Cold-inducible RNA-bind 99.9 1.7E-21 5.7E-26 128.7 11.8 81 16-101 8-93 (102)
48 1wex_A Hypothetical protein (r 99.9 9.9E-22 3.4E-26 132.0 10.8 82 16-101 11-92 (104)
49 3mdf_A Peptidyl-prolyl CIS-tra 99.9 5E-22 1.7E-26 127.0 8.8 78 16-98 3-85 (85)
50 2cpf_A RNA binding motif prote 99.9 4.5E-22 1.6E-26 130.6 8.8 80 17-101 2-89 (98)
51 2cpd_A Apobec-1 stimulating pr 99.9 3.4E-21 1.2E-25 126.9 12.9 78 16-101 11-90 (99)
52 2cqb_A Peptidyl-prolyl CIS-tra 99.9 8.1E-22 2.8E-26 130.3 9.9 81 16-101 8-93 (102)
53 1x5t_A Splicing factor 3B subu 99.9 7.8E-22 2.7E-26 128.9 9.6 81 17-102 2-88 (96)
54 2la4_A Nuclear and cytoplasmic 99.9 7.8E-22 2.7E-26 130.3 9.4 79 16-100 23-101 (101)
55 2a3j_A U1 small nuclear ribonu 99.9 1.1E-21 3.9E-26 136.2 10.6 81 16-101 25-111 (127)
56 4a8x_A RNA-binding protein wit 99.9 1E-21 3.5E-26 126.1 9.7 79 19-102 3-87 (88)
57 1fje_B Nucleolin RBD12, protei 99.9 7.5E-22 2.6E-26 140.6 9.9 110 16-132 9-122 (175)
58 1x5p_A Negative elongation fac 99.9 3.2E-21 1.1E-25 126.7 12.0 79 16-102 11-89 (97)
59 2cqc_A Arginine/serine-rich sp 99.9 9.4E-22 3.2E-26 128.1 9.0 79 16-99 11-94 (95)
60 3md1_A Nuclear and cytoplasmic 99.9 9.8E-22 3.3E-26 125.1 8.9 77 20-101 1-82 (83)
61 1x4g_A Nucleolysin TIAR; struc 99.9 2.2E-21 7.4E-26 130.0 10.9 80 16-101 21-100 (109)
62 2xnq_A Nuclear polyadenylated 99.9 2.1E-21 7.2E-26 128.2 10.5 78 16-101 18-96 (97)
63 2dgt_A RNA-binding protein 30; 99.9 3.1E-21 1.1E-25 125.5 10.9 78 16-101 6-83 (92)
64 2e5h_A Zinc finger CCHC-type a 99.9 3.1E-21 1E-25 125.6 10.9 78 16-98 12-94 (94)
65 2kxn_B Transformer-2 protein h 99.9 1.5E-21 5.3E-26 135.3 9.9 82 16-102 42-128 (129)
66 2dnh_A Bruno-like 5, RNA bindi 99.9 4.4E-21 1.5E-25 127.3 11.7 81 16-101 11-98 (105)
67 2kvi_A Nuclear polyadenylated 99.9 1.4E-21 4.7E-26 128.4 9.0 78 16-101 6-84 (96)
68 3smz_A Protein raver-1, ribonu 99.9 3.2E-21 1.1E-25 147.3 12.1 99 18-132 20-118 (284)
69 2khc_A Testis-specific RNP-typ 99.9 2.8E-21 9.5E-26 130.9 10.4 78 16-98 36-118 (118)
70 2i2y_A Fusion protein consists 99.9 3E-21 1E-25 136.0 10.9 81 16-101 69-149 (150)
71 2dgu_A Heterogeneous nuclear r 99.9 3.9E-21 1.3E-25 127.6 10.9 78 16-101 7-84 (103)
72 2dgp_A Bruno-like 4, RNA bindi 99.9 5.2E-21 1.8E-25 127.2 11.4 81 16-101 9-97 (106)
73 2dgv_A HnRNP M, heterogeneous 99.9 2.3E-21 7.8E-26 125.7 9.4 80 17-101 5-87 (92)
74 2lkz_A RNA-binding protein 5; 99.9 1.4E-21 4.8E-26 129.3 8.6 81 17-99 6-94 (95)
75 1oo0_B CG8781-PA, drosophila Y 99.9 2.7E-21 9.2E-26 129.5 9.9 82 16-102 22-108 (110)
76 2dgx_A KIAA0430 protein; RRM d 99.9 2.6E-21 9E-26 127.2 9.7 79 18-101 7-91 (96)
77 1wi8_A EIF-4B, eukaryotic tran 99.9 6.2E-21 2.1E-25 126.6 11.5 80 16-102 11-96 (104)
78 2jvr_A Nucleolar protein 3; RN 99.9 1.2E-21 4E-26 133.3 8.1 79 18-101 26-106 (111)
79 2ytc_A PRE-mRNA-splicing facto 99.9 1.6E-21 5.4E-26 124.8 8.2 76 17-98 9-85 (85)
80 1whx_A Hypothetical protein ri 99.9 1.7E-21 5.7E-26 131.7 8.7 78 18-101 8-85 (111)
81 3smz_A Protein raver-1, ribonu 99.9 4.1E-21 1.4E-25 146.7 12.0 110 18-132 93-208 (284)
82 2dgo_A Cytotoxic granule-assoc 99.9 5.5E-21 1.9E-25 128.9 11.3 82 16-102 11-97 (115)
83 2dnp_A RNA-binding protein 14; 99.9 4.5E-21 1.5E-25 124.3 10.3 77 17-101 6-82 (90)
84 2cqd_A RNA-binding region cont 99.9 8.7E-21 3E-25 128.2 12.0 80 16-101 13-97 (116)
85 3ns6_A Eukaryotic translation 99.9 6.3E-22 2.1E-26 131.3 6.1 79 18-101 4-94 (100)
86 2la6_A RNA-binding protein FUS 99.9 4.1E-21 1.4E-25 126.5 10.0 78 16-98 9-99 (99)
87 2jvo_A Nucleolar protein 3; nu 99.9 2.2E-21 7.4E-26 130.6 8.8 78 16-101 27-104 (108)
88 2jrs_A RNA-binding protein 39; 99.9 3.6E-21 1.2E-25 129.4 9.9 81 16-101 22-107 (108)
89 2cqh_A IGF-II mRNA-binding pro 99.9 1.6E-21 5.5E-26 127.0 7.9 79 16-101 4-84 (93)
90 1x4f_A Matrin 3; structural ge 99.9 2.8E-21 9.6E-26 131.8 9.3 80 16-101 21-103 (112)
91 2cq0_A Eukaryotic translation 99.9 2.3E-21 7.8E-26 128.4 8.6 81 16-101 11-96 (103)
92 2cq2_A Hypothetical protein LO 99.9 2.2E-21 7.4E-26 132.7 8.6 84 15-101 20-107 (114)
93 2err_A Ataxin-2-binding protei 99.9 3.9E-21 1.3E-25 129.3 9.7 80 16-100 25-107 (109)
94 3zzy_A Polypyrimidine tract-bi 99.8 2.6E-21 8.9E-26 135.1 8.8 76 21-101 29-107 (130)
95 3ex7_B RNA-binding protein 8A; 99.8 6.8E-21 2.3E-25 130.3 10.6 82 16-102 18-104 (126)
96 1nu4_A U1A RNA binding domain; 99.8 2.4E-21 8.3E-26 126.7 8.0 80 17-101 5-90 (97)
97 1x4c_A Splicing factor, argini 99.8 1E-20 3.5E-25 126.8 11.1 77 18-101 13-94 (108)
98 2fy1_A RNA-binding motif prote 99.8 1.1E-20 3.7E-25 128.5 11.3 80 17-101 4-87 (116)
99 2cpe_A RNA-binding protein EWS 99.8 9.3E-21 3.2E-25 127.4 10.6 82 16-102 11-105 (113)
100 3p5t_L Cleavage and polyadenyl 99.8 8.3E-22 2.8E-26 128.0 5.0 76 21-101 2-84 (90)
101 3lqv_A PRE-mRNA branch site pr 99.8 9.6E-21 3.3E-25 127.7 10.4 80 17-101 5-86 (115)
102 2cpx_A Hypothetical protein FL 99.8 1.2E-20 4E-25 127.1 10.7 81 16-101 21-106 (115)
103 2dng_A Eukaryotic translation 99.8 1.3E-20 4.5E-25 124.9 10.7 79 16-101 11-94 (103)
104 2lea_A Serine/arginine-rich sp 99.8 3.6E-21 1.2E-25 134.3 8.3 88 9-102 37-129 (135)
105 2m2b_A RNA-binding protein 10; 99.8 4.4E-21 1.5E-25 132.7 8.4 80 16-101 19-109 (131)
106 2do0_A HnRNP M, heterogeneous 99.8 1.3E-20 4.3E-25 126.8 10.2 81 16-101 11-95 (114)
107 2nlw_A Eukaryotic translation 99.8 8.8E-21 3E-25 126.6 9.4 81 16-101 11-101 (105)
108 2dis_A Unnamed protein product 99.8 1E-20 3.5E-25 126.3 9.6 80 17-101 5-93 (109)
109 1fjc_A Nucleolin RBD2, protein 99.8 3.3E-21 1.1E-25 126.0 7.0 81 16-101 12-92 (96)
110 1u6f_A Tcubp1, RNA-binding pro 99.8 1.8E-20 6E-25 130.2 11.0 81 16-101 38-123 (139)
111 2ywk_A Putative RNA-binding pr 99.8 5.3E-21 1.8E-25 124.7 7.8 79 16-99 12-94 (95)
112 2cpi_A CCR4-NOT transcription 99.8 7.8E-21 2.7E-25 128.0 8.8 80 17-101 12-102 (111)
113 2kn4_A Immunoglobulin G-bindin 99.8 2.6E-20 8.7E-25 131.8 11.8 82 16-102 66-152 (158)
114 2div_A TRNA selenocysteine ass 99.8 4.3E-21 1.5E-25 126.1 7.2 81 16-101 5-95 (99)
115 2cq4_A RNA binding motif prote 99.8 4.7E-21 1.6E-25 129.2 7.6 77 19-101 24-105 (114)
116 2kt5_A RNA and export factor-b 99.8 2.3E-20 7.8E-25 127.6 11.1 81 16-101 31-115 (124)
117 2fc9_A NCL protein; structure 99.8 1.6E-20 5.5E-25 123.9 9.7 81 16-101 11-92 (101)
118 3ulh_A THO complex subunit 4; 99.8 1.4E-20 4.7E-25 125.3 9.3 78 16-98 25-106 (107)
119 1x4e_A RNA binding motif, sing 99.8 3.7E-21 1.3E-25 123.2 6.1 77 17-98 2-83 (85)
120 2j76_E EIF-4B, EIF4B, eukaryot 99.8 5.5E-21 1.9E-25 126.5 6.8 79 16-101 15-99 (100)
121 2ghp_A U4/U6 snRNA-associated 99.8 2.1E-20 7.3E-25 143.2 11.1 110 18-132 115-234 (292)
122 3ucg_A Polyadenylate-binding p 99.8 1.3E-20 4.3E-25 121.4 8.1 77 19-101 5-86 (89)
123 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.8 3.4E-20 1.2E-24 128.3 10.8 77 16-97 59-140 (140)
124 2e5i_A Heterogeneous nuclear r 99.8 2.8E-20 9.7E-25 128.8 10.3 79 17-101 20-103 (124)
125 1wf1_A RNA-binding protein RAL 99.8 4.5E-20 1.5E-24 123.7 10.8 79 16-101 23-101 (110)
126 1s79_A Lupus LA protein; RRM, 99.8 1.6E-20 5.4E-25 125.7 8.3 77 17-99 8-88 (103)
127 2e44_A Insulin-like growth fac 99.8 5.6E-20 1.9E-24 120.1 10.7 79 18-101 13-93 (96)
128 1wg1_A KIAA1579 protein, homol 99.8 1.4E-20 4.6E-25 121.8 7.6 77 18-101 3-79 (88)
129 2rs2_A Musashi-1, RNA-binding 99.8 3.2E-20 1.1E-24 124.9 9.6 81 16-102 21-106 (109)
130 2diu_A KIAA0430 protein; struc 99.8 3.5E-20 1.2E-24 122.7 9.4 75 17-101 5-85 (96)
131 1sjr_A Polypyrimidine tract-bi 99.8 3.6E-20 1.2E-24 133.9 10.3 77 20-101 46-125 (164)
132 2ghp_A U4/U6 snRNA-associated 99.8 2.1E-20 7.3E-25 143.2 9.6 101 16-132 37-140 (292)
133 1x5o_A RNA binding motif, sing 99.8 1.3E-19 4.6E-24 121.9 12.4 80 16-100 21-112 (114)
134 1h2v_Z 20 kDa nuclear CAP bind 99.8 3.5E-20 1.2E-24 131.2 9.9 81 16-101 35-120 (156)
135 1p1t_A Cleavage stimulation fa 99.8 1.2E-20 4.2E-25 124.8 7.1 79 18-101 6-89 (104)
136 2ki2_A SS-DNA binding protein 99.8 4.8E-21 1.6E-25 123.9 4.8 75 21-101 2-81 (90)
137 2dh8_A DAZ-associated protein 99.8 2.4E-20 8.2E-25 123.9 8.3 80 16-101 12-96 (105)
138 2cqp_A RNA-binding protein 12; 99.8 1.1E-20 3.8E-25 123.9 6.3 80 16-100 11-95 (98)
139 2krb_A Eukaryotic translation 99.8 1.3E-20 4.5E-25 120.0 6.4 70 20-94 1-80 (81)
140 3d2w_A TAR DNA-binding protein 99.8 5.3E-20 1.8E-24 119.8 9.3 79 16-101 7-85 (89)
141 3s7r_A Heterogeneous nuclear r 99.8 4.3E-20 1.5E-24 118.6 8.6 76 16-97 7-87 (87)
142 1wg5_A Heterogeneous nuclear r 99.8 2.4E-19 8.3E-24 119.4 12.4 79 17-101 12-95 (104)
143 3n9u_C Cleavage and polyadenyl 99.8 2E-20 7E-25 133.7 7.5 78 19-101 54-138 (156)
144 2cqg_A TDP-43, TAR DNA-binding 99.8 1.7E-19 5.8E-24 119.3 11.4 79 16-101 11-94 (103)
145 2mss_A Protein (musashi1); RNA 99.8 2.5E-20 8.5E-25 116.7 6.9 70 22-97 1-75 (75)
146 1fj7_A Nucleolin RBD1, protein 99.8 1.9E-20 6.6E-25 123.5 6.7 80 16-101 13-96 (101)
147 2fc8_A NCL protein; structure 99.8 1.3E-19 4.3E-24 119.6 10.6 81 16-101 11-93 (102)
148 2ek1_A RNA-binding protein 12; 99.8 8.7E-21 3E-25 123.6 4.8 78 17-99 12-94 (95)
149 2dhg_A TRNA selenocysteine ass 99.8 5.6E-20 1.9E-24 121.7 8.8 82 16-101 5-91 (104)
150 2bz2_A Negative elongation fac 99.8 7.1E-20 2.4E-24 125.7 9.5 78 16-101 35-112 (121)
151 1x4b_A Heterogeneous nuclear r 99.8 5.8E-20 2E-24 124.1 8.5 77 19-101 26-107 (116)
152 3beg_B Splicing factor, argini 99.8 6.1E-20 2.1E-24 124.6 8.3 77 18-101 14-95 (115)
153 3egn_A RNA-binding protein 40; 99.8 7.3E-20 2.5E-24 127.9 8.9 82 16-102 41-132 (143)
154 2f3j_A RNA and export factor b 99.8 1.8E-19 6E-24 131.1 11.2 80 17-101 85-168 (177)
155 1wf0_A TDP-43, TAR DNA-binding 99.8 4.7E-20 1.6E-24 119.0 7.1 78 17-101 2-79 (88)
156 2jwn_A Embryonic polyadenylate 99.8 1.2E-19 4.2E-24 123.7 9.5 77 19-101 35-116 (124)
157 1rk8_A CG8781-PA, CG8781-PA pr 99.8 7.2E-20 2.5E-24 131.1 8.7 82 16-102 68-154 (165)
158 1uaw_A Mouse-musashi-1; RNP-ty 99.8 4.7E-20 1.6E-24 115.7 6.6 71 21-97 1-76 (77)
159 2dgw_A Probable RNA-binding pr 99.8 1.4E-19 4.7E-24 117.3 8.8 78 17-101 7-88 (91)
160 1wel_A RNA-binding protein 12; 99.8 7E-20 2.4E-24 125.4 7.2 80 16-101 21-105 (124)
161 2cpy_A RNA-binding protein 12; 99.8 9.1E-20 3.1E-24 123.3 7.0 80 16-101 11-95 (114)
162 2hzc_A Splicing factor U2AF 65 99.8 1.5E-19 5E-24 115.8 7.6 73 17-96 3-86 (87)
163 1qm9_A Polypyrimidine tract-bi 99.8 6E-19 2E-23 128.1 11.6 79 17-100 117-197 (198)
164 3md3_A Nuclear and cytoplasmic 99.8 2E-19 6.9E-24 126.0 8.3 79 16-99 83-166 (166)
165 2e5g_A U6 snRNA-specific termi 99.8 4.6E-19 1.6E-23 115.7 9.3 78 18-101 6-83 (94)
166 1fje_B Nucleolin RBD12, protei 99.8 9.5E-20 3.3E-24 129.6 6.4 81 16-101 95-175 (175)
167 3u1l_A PRE-mRNA-splicing facto 99.8 2E-19 7E-24 136.9 8.0 79 17-101 131-230 (240)
168 2lcw_A RNA-binding protein FUS 99.7 9.9E-21 3.4E-25 128.1 0.0 80 17-101 4-96 (116)
169 3pgw_A U1-A; protein-RNA compl 99.8 1.6E-18 5.3E-23 132.2 12.2 78 16-98 203-281 (282)
170 2adc_A Polypyrimidine tract-bi 99.8 2.3E-18 7.8E-23 128.6 12.8 79 17-100 148-228 (229)
171 2db1_A Heterogeneous nuclear r 99.8 2.5E-19 8.7E-24 122.1 6.9 79 17-101 14-99 (118)
172 1iqt_A AUF1, heterogeneous nuc 99.8 1.3E-19 4.6E-24 113.2 4.8 70 22-97 1-75 (75)
173 2lmi_A GRSF-1, G-rich sequence 99.8 2.3E-19 7.9E-24 120.0 6.1 80 16-101 7-93 (107)
174 1wez_A HnRNP H', FTP-3, hetero 99.8 7.2E-19 2.5E-23 117.2 8.5 79 16-101 11-93 (102)
175 3q2s_C Cleavage and polyadenyl 99.8 3.4E-19 1.2E-23 134.3 7.3 77 19-100 67-150 (229)
176 2pe8_A Splicing factor 45; RRM 99.8 1.2E-18 4E-23 117.1 8.8 82 17-101 5-95 (105)
177 4f02_A Polyadenylate-binding p 99.8 6.2E-19 2.1E-23 130.4 7.7 78 19-101 102-182 (213)
178 2dit_A HIV TAT specific factor 99.8 5E-18 1.7E-22 114.4 11.4 81 16-101 11-103 (112)
179 2hgl_A HNRPF protein, heteroge 99.8 3.3E-19 1.1E-23 125.0 5.7 79 17-101 41-126 (136)
180 2qfj_A FBP-interacting repress 99.8 2.2E-18 7.5E-23 125.9 10.1 79 18-101 123-206 (216)
181 3nmr_A Cugbp ELAV-like family 99.8 9.4E-19 3.2E-23 123.7 7.7 77 16-97 91-174 (175)
182 2cjk_A Nuclear polyadenylated 99.8 1E-18 3.5E-23 123.1 7.6 77 19-101 86-167 (167)
183 2yh0_A Splicing factor U2AF 65 99.8 3.3E-18 1.1E-22 123.5 10.4 80 17-101 111-195 (198)
184 2g4b_A Splicing factor U2AF 65 99.8 1.1E-18 3.9E-23 123.3 7.8 76 18-98 92-172 (172)
185 1b7f_A Protein (SXL-lethal pro 99.8 2E-18 6.8E-23 121.5 8.9 77 16-97 85-168 (168)
186 2xs2_A Deleted in azoospermia- 99.8 4E-19 1.4E-23 117.3 4.3 78 17-101 6-87 (102)
187 3pgw_S U1-70K; protein-RNA com 99.7 4.9E-18 1.7E-22 138.7 10.3 80 17-101 99-183 (437)
188 1fxl_A Paraneoplastic encephal 99.7 3.1E-18 1.1E-22 120.0 7.9 76 17-97 85-167 (167)
189 2dnl_A Cytoplasmic polyadenyla 99.7 8.9E-18 3.1E-22 113.4 9.5 74 17-98 5-86 (114)
190 3tht_A Alkylated DNA repair pr 99.7 4.6E-18 1.6E-22 135.4 9.4 82 16-98 14-97 (345)
191 2dnn_A RNA-binding protein 12; 99.7 6.5E-18 2.2E-22 114.2 8.5 75 20-101 16-94 (109)
192 2hgn_A Heterogeneous nuclear r 99.7 1.2E-18 4.2E-23 122.6 4.9 77 18-101 44-124 (139)
193 2hgm_A HNRPF protein, heteroge 99.7 8.8E-18 3E-22 116.5 7.7 77 17-100 39-121 (126)
194 3v4m_A Splicing factor U2AF 65 99.7 1.3E-17 4.3E-22 112.0 8.1 81 17-100 2-97 (105)
195 1l3k_A Heterogeneous nuclear r 99.7 1.7E-17 5.9E-22 119.5 8.3 79 17-101 101-184 (196)
196 2dha_A FLJ20171 protein; RRM d 99.7 3.4E-18 1.2E-22 118.0 4.2 78 18-101 21-106 (123)
197 2d9o_A DNAJ (HSP40) homolog, s 99.7 4.1E-16 1.4E-20 104.0 11.2 75 20-101 10-91 (100)
198 3tyt_A Heterogeneous nuclear r 99.7 5.9E-17 2E-21 120.0 7.9 76 17-97 120-204 (205)
199 2voo_A Lupus LA protein; RNA-b 99.7 6.5E-17 2.2E-21 118.9 7.6 75 19-99 108-186 (193)
200 3s6e_A RNA-binding protein 39; 99.7 6E-16 2.1E-20 105.4 9.9 81 18-101 5-94 (114)
201 2j8a_A Histone-lysine N-methyl 99.7 1.1E-16 3.8E-21 111.6 6.3 74 21-99 3-95 (136)
202 3ue2_A Poly(U)-binding-splicin 99.6 2.8E-16 9.6E-21 107.7 7.3 80 18-100 18-109 (118)
203 1jmt_A Splicing factor U2AF 35 99.6 1.1E-16 3.7E-21 107.2 3.0 67 26-97 21-103 (104)
204 3sde_A Paraspeckle component 1 99.6 1.5E-15 5E-20 115.4 7.7 82 18-101 94-180 (261)
205 2dnr_A Synaptojanin-1; RRM dom 99.4 4.3E-13 1.5E-17 87.8 8.5 79 16-101 3-87 (91)
206 1owx_A Lupus LA protein, SS-B, 99.3 4.4E-11 1.5E-15 82.2 11.0 78 16-98 14-94 (121)
207 3dxb_A Thioredoxin N-terminall 99.3 6.7E-12 2.3E-16 92.9 6.8 80 18-100 122-213 (222)
208 1ufw_A Synaptojanin 2; RNP dom 99.2 1.5E-11 5E-16 81.0 6.1 76 16-98 11-93 (95)
209 2i2y_A Fusion protein consists 98.9 1.5E-09 5.3E-14 75.6 4.0 72 57-132 11-96 (150)
210 2l9w_A U4/U6 snRNA-associated- 98.8 1.4E-08 4.9E-13 68.4 7.5 72 18-95 19-95 (117)
211 1wey_A Calcipressin 1; structu 98.6 5.3E-08 1.8E-12 64.9 5.6 76 20-101 5-85 (104)
212 2kn4_A Immunoglobulin G-bindin 98.6 6E-08 2.1E-12 67.7 5.9 74 56-132 10-93 (158)
213 2dhx_A Poly (ADP-ribose) polym 98.2 2.6E-05 9E-10 51.8 10.8 92 17-124 5-101 (104)
214 1uw4_A UPF3X; nonsense mediate 97.7 0.00051 1.7E-08 44.5 9.5 77 21-99 2-87 (91)
215 2lea_A Serine/arginine-rich sp 97.6 1.6E-05 5.5E-10 54.5 1.1 66 60-132 5-70 (135)
216 3pq1_A Poly(A) RNA polymerase; 97.4 9E-05 3.1E-09 60.9 3.4 55 20-77 53-107 (464)
217 1whv_A Poly(A)-specific ribonu 97.3 0.0018 6E-08 42.6 7.9 54 21-80 17-70 (100)
218 1wwh_A Nucleoporin 35, nucleop 97.2 0.0012 4.1E-08 44.8 6.8 71 19-97 23-94 (119)
219 1rk8_A CG8781-PA, CG8781-PA pr 97.0 0.00029 1E-08 49.4 2.6 66 64-132 11-95 (165)
220 3ctr_A Poly(A)-specific ribonu 97.0 0.0012 4E-08 43.5 5.2 53 22-80 8-60 (101)
221 3pgw_S U1-70K; protein-RNA com 96.8 7.2E-05 2.5E-09 60.8 -2.3 90 39-132 9-125 (437)
222 2l08_A Regulator of nonsense t 96.5 0.0069 2.4E-07 39.6 5.8 78 19-98 8-94 (97)
223 1wf1_A RNA-binding protein RAL 96.0 0.0036 1.2E-07 40.6 2.5 46 87-132 5-51 (110)
224 3p3d_A Nucleoporin 53; structu 95.4 0.015 5.1E-07 40.0 3.9 73 20-99 7-98 (132)
225 2hgn_A Heterogeneous nuclear r 94.7 0.012 4.2E-07 40.4 1.7 69 59-132 1-69 (139)
226 2dnh_A Bruno-like 5, RNA bindi 94.4 0.037 1.3E-06 35.1 3.5 26 107-132 13-38 (105)
227 2fc8_A NCL protein; structure 94.3 0.036 1.2E-06 35.0 3.2 29 104-132 10-38 (102)
228 3s7r_A Heterogeneous nuclear r 94.0 0.035 1.2E-06 34.0 2.8 27 106-132 8-34 (87)
229 3d45_A Poly(A)-specific ribonu 93.9 0.27 9.1E-06 40.6 8.5 57 20-82 440-496 (507)
230 2dnm_A SRP46 splicing factor; 93.7 0.051 1.8E-06 34.4 3.2 28 105-132 9-36 (103)
231 2dgt_A RNA-binding protein 30; 93.6 0.05 1.7E-06 33.8 2.9 27 106-132 7-33 (92)
232 2jwn_A Embryonic polyadenylate 93.6 0.0013 4.6E-08 43.5 -4.9 25 108-132 35-59 (124)
233 2cq1_A PTB-like protein L; RRM 93.5 0.064 2.2E-06 34.6 3.4 28 105-132 11-38 (101)
234 2cq3_A RNA-binding protein 9; 93.5 0.075 2.6E-06 33.6 3.7 28 105-132 11-38 (103)
235 2ytc_A PRE-mRNA-splicing facto 93.4 0.063 2.2E-06 32.6 3.0 26 107-132 10-35 (85)
236 2d9p_A Polyadenylate-binding p 93.4 0.078 2.7E-06 33.5 3.6 28 105-132 11-38 (103)
237 2cq0_A Eukaryotic translation 93.3 0.057 2E-06 34.1 2.9 28 105-132 11-38 (103)
238 2cqc_A Arginine/serine-rich sp 93.3 0.069 2.4E-06 33.1 3.2 29 104-132 10-38 (95)
239 2jvr_A Nucleolar protein 3; RN 93.3 0.044 1.5E-06 36.1 2.3 36 90-131 15-50 (111)
240 2dnp_A RNA-binding protein 14; 93.3 0.059 2E-06 33.3 2.8 26 107-132 7-32 (90)
241 2cph_A RNA binding motif prote 93.3 0.073 2.5E-06 33.8 3.3 28 105-132 11-38 (107)
242 1x5u_A Splicing factor 3B subu 93.3 0.063 2.2E-06 34.0 3.0 28 105-132 11-38 (105)
243 2dgp_A Bruno-like 4, RNA bindi 93.1 0.059 2E-06 34.2 2.7 28 105-132 9-36 (106)
244 2g0c_A ATP-dependent RNA helic 93.1 0.46 1.6E-05 28.6 6.7 69 22-98 2-75 (76)
245 4fxv_A ELAV-like protein 1; RN 93.1 0.04 1.4E-06 35.2 1.8 23 110-132 20-42 (99)
246 2cpj_A Non-POU domain-containi 93.1 0.089 3.1E-06 33.0 3.5 27 106-132 12-38 (99)
247 2do4_A Squamous cell carcinoma 93.0 0.088 3E-06 33.0 3.4 28 105-132 13-40 (100)
248 2cpd_A Apobec-1 stimulating pr 92.9 0.095 3.3E-06 32.9 3.5 27 106-132 12-38 (99)
249 2la6_A RNA-binding protein FUS 92.9 0.098 3.3E-06 32.8 3.5 28 105-132 9-36 (99)
250 2jrs_A RNA-binding protein 39; 92.9 0.046 1.6E-06 35.4 1.9 28 105-132 22-49 (108)
251 1wi8_A EIF-4B, eukaryotic tran 92.8 0.099 3.4E-06 33.1 3.5 25 108-132 14-38 (104)
252 2khc_A Testis-specific RNP-typ 92.8 0.066 2.3E-06 34.7 2.6 27 106-132 37-63 (118)
253 2e5j_A Methenyltetrahydrofolat 92.8 0.098 3.4E-06 32.8 3.4 27 106-132 16-42 (97)
254 2e5h_A Zinc finger CCHC-type a 92.8 0.084 2.9E-06 32.7 3.0 27 106-132 13-39 (94)
255 1x4h_A RNA-binding protein 28; 92.8 0.092 3.2E-06 33.5 3.3 27 106-132 12-38 (111)
256 2cqg_A TDP-43, TAR DNA-binding 92.8 0.088 3E-06 33.2 3.1 27 106-132 12-38 (103)
257 2cpe_A RNA-binding protein EWS 92.7 0.087 3E-06 33.8 3.1 28 105-132 11-38 (113)
258 2cqd_A RNA-binding region cont 92.7 0.087 3E-06 34.1 3.1 28 105-132 13-40 (116)
259 2dgo_A Cytotoxic granule-assoc 92.7 0.079 2.7E-06 34.2 2.9 28 105-132 11-38 (115)
260 2m2b_A RNA-binding protein 10; 92.7 0.081 2.8E-06 35.2 3.0 27 106-132 20-46 (131)
261 2cpy_A RNA-binding protein 12; 92.7 0.09 3.1E-06 34.1 3.2 27 106-132 12-38 (114)
262 2dgs_A DAZ-associated protein 92.7 0.092 3.2E-06 32.9 3.1 26 107-132 8-33 (99)
263 1x4a_A Splicing factor, argini 92.7 0.085 2.9E-06 33.7 3.0 27 106-132 19-45 (109)
264 2cpz_A CUG triplet repeat RNA- 92.7 0.089 3E-06 34.0 3.1 27 106-132 22-48 (115)
265 1s79_A Lupus LA protein; RRM, 92.7 0.065 2.2E-06 34.5 2.4 27 106-132 8-34 (103)
266 2lkz_A RNA-binding protein 5; 92.7 0.058 2E-06 34.4 2.1 24 109-132 9-32 (95)
267 2e44_A Insulin-like growth fac 92.6 0.096 3.3E-06 32.6 3.1 24 108-131 14-37 (96)
268 2voo_A Lupus LA protein; RNA-b 92.6 0.044 1.5E-06 39.3 1.7 62 68-132 63-132 (193)
269 2ywk_A Putative RNA-binding pr 92.6 0.073 2.5E-06 33.0 2.5 27 106-132 13-39 (95)
270 2dng_A Eukaryotic translation 92.6 0.11 3.8E-06 32.8 3.4 26 107-132 13-38 (103)
271 2fc9_A NCL protein; structure 92.5 0.089 3.1E-06 33.1 2.9 26 107-132 13-38 (101)
272 2cqi_A Nucleolysin TIAR; RNA r 92.5 0.088 3E-06 33.3 2.9 27 106-132 12-38 (103)
273 1sjq_A Polypyrimidine tract-bi 92.5 0.062 2.1E-06 35.3 2.1 24 108-131 15-38 (105)
274 2e5g_A U6 snRNA-specific termi 92.5 0.1 3.5E-06 32.5 3.1 24 109-132 8-31 (94)
275 1x4e_A RNA binding motif, sing 92.4 0.083 2.9E-06 32.1 2.6 24 109-132 5-28 (85)
276 2ad9_A Polypyrimidine tract-bi 92.4 0.091 3.1E-06 35.2 2.9 27 106-132 28-54 (119)
277 1p27_B RNA-binding protein 8A; 92.4 0.096 3.3E-06 33.2 2.9 28 105-132 19-46 (106)
278 1fjc_A Nucleolin RBD2, protein 92.3 0.085 2.9E-06 32.8 2.6 27 106-132 13-39 (96)
279 1wex_A Hypothetical protein (r 92.3 0.095 3.3E-06 33.9 2.9 27 106-132 12-38 (104)
280 2err_A Ataxin-2-binding protei 92.3 0.12 4E-06 33.3 3.3 29 104-132 24-52 (109)
281 2dgw_A Probable RNA-binding pr 92.2 0.12 4E-06 31.9 3.2 26 107-132 8-33 (91)
282 1why_A Hypothetical protein ri 92.2 0.13 4.5E-06 32.1 3.4 25 108-132 16-40 (97)
283 3mdf_A Peptidyl-prolyl CIS-tra 92.2 0.099 3.4E-06 31.6 2.7 25 108-132 6-30 (85)
284 2cqh_A IGF-II mRNA-binding pro 92.1 0.097 3.3E-06 32.4 2.7 25 108-132 7-31 (93)
285 1fj7_A Nucleolin RBD1, protein 92.1 0.095 3.2E-06 33.0 2.6 26 107-132 15-40 (101)
286 2cqb_A Peptidyl-prolyl CIS-tra 92.1 0.12 4E-06 32.5 3.0 26 107-132 10-35 (102)
287 2la4_A Nuclear and cytoplasmic 92.0 0.11 3.8E-06 32.6 2.9 25 108-132 26-50 (101)
288 2hzc_A Splicing factor U2AF 65 92.0 0.072 2.5E-06 32.4 1.9 24 109-132 6-29 (87)
289 2cqp_A RNA-binding protein 12; 92.0 0.14 4.8E-06 31.9 3.4 25 108-132 14-38 (98)
290 2dgu_A Heterogeneous nuclear r 92.0 0.099 3.4E-06 33.1 2.7 26 107-132 9-34 (103)
291 1x4d_A Matrin 3; structural ge 92.0 0.11 3.6E-06 33.8 2.8 26 107-132 13-39 (102)
292 3r27_A HnRNP L, heterogeneous 92.0 0.092 3.1E-06 34.2 2.5 26 107-132 19-44 (100)
293 1x4f_A Matrin 3; structural ge 92.0 0.15 5.2E-06 33.7 3.6 27 106-132 22-49 (112)
294 3d2w_A TAR DNA-binding protein 91.9 0.077 2.6E-06 33.1 2.0 25 108-132 10-34 (89)
295 2dh8_A DAZ-associated protein 91.9 0.088 3E-06 33.4 2.3 28 105-132 12-39 (105)
296 2dgv_A HnRNP M, heterogeneous 91.8 0.11 3.8E-06 31.9 2.7 25 108-132 7-31 (92)
297 2kt5_A RNA and export factor-b 91.8 0.1 3.4E-06 34.2 2.6 26 107-132 33-58 (124)
298 2dnq_A RNA-binding protein 4B; 91.8 0.12 4E-06 31.9 2.7 25 108-132 7-31 (90)
299 2j76_E EIF-4B, EIF4B, eukaryot 91.8 0.081 2.8E-06 33.5 2.0 28 105-132 15-42 (100)
300 1x4c_A Splicing factor, argini 91.7 0.13 4.4E-06 33.0 3.0 24 109-132 15-38 (108)
301 3ulh_A THO complex subunit 4; 91.7 0.11 3.6E-06 33.0 2.5 27 106-132 26-52 (107)
302 2div_A TRNA selenocysteine ass 91.7 0.11 3.9E-06 32.4 2.7 25 108-132 8-32 (99)
303 2hgl_A HNRPF protein, heteroge 91.7 0.14 4.9E-06 34.8 3.3 25 108-132 43-67 (136)
304 2do0_A HnRNP M, heterogeneous 91.6 0.14 4.7E-06 32.9 3.0 25 108-132 14-38 (114)
305 1x5o_A RNA binding motif, sing 91.5 0.15 5.1E-06 32.7 3.1 26 107-132 23-48 (114)
306 1x5s_A Cold-inducible RNA-bind 91.4 0.13 4.4E-06 32.3 2.7 26 107-132 10-35 (102)
307 2wbr_A GW182, gawky, LD47780P; 91.4 0.099 3.4E-06 33.5 2.1 24 109-132 7-30 (89)
308 1wg5_A Heterogeneous nuclear r 91.4 0.15 5.3E-06 32.4 3.1 26 107-132 13-38 (104)
309 2hgm_A HNRPF protein, heteroge 91.3 0.15 5.1E-06 34.3 3.1 26 107-132 40-65 (126)
310 2cpx_A Hypothetical protein FL 91.3 0.15 5.1E-06 32.7 3.0 25 108-132 24-48 (115)
311 1wez_A HnRNP H', FTP-3, hetero 91.3 0.16 5.4E-06 32.5 3.0 26 107-132 13-38 (102)
312 1oo0_B CG8781-PA, drosophila Y 91.3 0.13 4.6E-06 32.7 2.7 27 106-132 23-49 (110)
313 2jvo_A Nucleolar protein 3; nu 91.2 0.12 4E-06 33.4 2.4 28 105-132 27-54 (108)
314 1x4g_A Nucleolysin TIAR; struc 91.1 0.14 4.7E-06 32.7 2.6 26 106-131 22-47 (109)
315 3ucg_A Polyadenylate-binding p 91.1 0.11 3.9E-06 31.6 2.1 24 109-132 6-29 (89)
316 3ex7_B RNA-binding protein 8A; 90.9 0.15 5E-06 33.4 2.6 27 106-132 19-45 (126)
317 3bs9_A Nucleolysin TIA-1 isofo 90.9 0.12 4E-06 31.4 2.0 24 109-132 6-29 (87)
318 2rs2_A Musashi-1, RNA-binding 90.8 0.12 4E-06 33.3 2.1 28 105-132 21-48 (109)
319 2kvi_A Nuclear polyadenylated 90.7 0.13 4.5E-06 32.1 2.2 25 108-132 9-34 (96)
320 3beg_B Splicing factor, argini 90.6 0.14 4.8E-06 33.3 2.3 23 110-132 17-39 (115)
321 1wel_A RNA-binding protein 12; 90.6 0.24 8.3E-06 32.4 3.5 25 108-132 24-48 (124)
322 1u6f_A Tcubp1, RNA-binding pro 90.4 0.22 7.4E-06 33.1 3.2 27 106-132 39-65 (139)
323 2kxn_B Transformer-2 protein h 90.3 0.19 6.5E-06 33.5 2.9 28 105-132 42-69 (129)
324 2db1_A Heterogeneous nuclear r 90.3 0.2 6.9E-06 32.7 2.9 25 108-132 16-40 (118)
325 2ek1_A RNA-binding protein 12; 90.3 0.15 5E-06 31.6 2.1 24 109-132 15-38 (95)
326 1h2v_Z 20 kDa nuclear CAP bind 90.1 0.2 7E-06 34.0 2.9 26 107-132 37-62 (156)
327 2cq4_A RNA binding motif prote 89.9 0.16 5.4E-06 32.7 2.1 25 108-132 24-48 (114)
328 2nlw_A Eukaryotic translation 89.8 0.24 8.1E-06 31.5 2.9 25 108-132 14-44 (105)
329 3egn_A RNA-binding protein 40; 89.6 0.22 7.6E-06 33.3 2.7 25 108-132 44-68 (143)
330 2cpi_A CCR4-NOT transcription 89.5 0.28 9.7E-06 31.5 3.1 27 106-132 12-41 (111)
331 2xnq_A Nuclear polyadenylated 89.4 0.23 8E-06 31.2 2.6 27 106-132 19-46 (97)
332 2ku7_A MLL1 PHD3-CYP33 RRM chi 89.3 0.29 9.9E-06 32.3 3.1 27 106-132 60-86 (140)
333 1x4b_A Heterogeneous nuclear r 89.2 0.2 6.8E-06 32.3 2.2 27 106-132 24-50 (116)
334 3n9u_C Cleavage and polyadenyl 89.0 0.17 5.7E-06 35.0 1.8 24 109-132 55-78 (156)
335 2dnn_A RNA-binding protein 12; 88.3 0.25 8.4E-06 32.2 2.2 25 108-132 15-39 (109)
336 2dgx_A KIAA0430 protein; RRM d 87.9 0.36 1.2E-05 30.1 2.7 24 108-131 8-35 (96)
337 2dha_A FLJ20171 protein; RRM d 87.4 0.31 1.1E-05 32.5 2.3 24 109-132 23-46 (123)
338 3q2s_C Cleavage and polyadenyl 85.3 0.38 1.3E-05 35.3 2.0 24 109-132 68-91 (229)
339 2f3j_A RNA and export factor b 83.1 0.79 2.7E-05 32.2 2.8 24 109-132 88-111 (177)
340 2cq2_A Hypothetical protein LO 82.7 0.62 2.1E-05 30.8 2.0 24 108-131 24-49 (114)
341 3zzy_A Polypyrimidine tract-bi 81.9 0.64 2.2E-05 31.5 1.9 22 111-132 30-51 (130)
342 1x5p_A Negative elongation fac 80.6 1.5 5E-05 27.1 3.1 26 105-132 11-36 (97)
343 2a3j_A U1 small nuclear ribonu 80.3 1.3 4.4E-05 29.5 2.9 24 108-131 28-55 (127)
344 2e5i_A Heterogeneous nuclear r 78.9 0.92 3.2E-05 30.3 1.8 21 112-132 28-48 (124)
345 1sjr_A Polypyrimidine tract-bi 78.1 0.89 3E-05 32.1 1.6 22 110-131 47-68 (164)
346 2diu_A KIAA0430 protein; struc 75.7 1.7 5.7E-05 28.1 2.3 21 112-132 12-36 (96)
347 3h7h_B Transcription elongatio 75.2 3.6 0.00012 26.8 3.9 34 48-81 40-73 (106)
348 3j21_T 50S ribosomal protein L 72.4 14 0.00049 23.1 6.0 54 22-77 24-81 (86)
349 2exu_A Transcription initiatio 71.3 12 0.00042 27.1 6.3 32 49-80 139-170 (200)
350 3u1l_A PRE-mRNA-splicing facto 70.1 0.64 2.2E-05 34.7 -0.9 46 87-132 111-166 (240)
351 3lpe_A Putative transcription 67.4 19 0.00065 22.4 5.9 34 48-81 39-72 (92)
352 3ts2_A Protein LIN-28 homolog 66.6 1.4 4.8E-05 30.4 0.3 28 37-67 2-29 (148)
353 2bz2_A Negative elongation fac 63.0 4.9 0.00017 26.1 2.5 24 107-132 37-60 (121)
354 2eqj_A Metal-response element- 62.6 4.7 0.00016 24.2 2.1 20 47-69 32-51 (66)
355 2e5p_A Protein PHF1, PHD finge 62.3 4.9 0.00017 24.2 2.1 20 47-69 28-47 (68)
356 1vq8_S 50S ribosomal protein L 58.2 16 0.00055 22.8 4.2 51 22-74 23-77 (85)
357 2m0o_A PHD finger protein 1; t 57.1 6.6 0.00023 24.2 2.1 20 47-69 45-64 (79)
358 2e5q_A PHD finger protein 19; 51.6 3.7 0.00013 24.3 0.3 14 56-69 32-45 (63)
359 4hcz_A PHD finger protein 1; p 49.0 11 0.00038 21.9 2.1 20 47-69 22-41 (58)
360 1owx_A Lupus LA protein, SS-B, 47.1 9.7 0.00033 25.3 1.9 23 110-132 19-42 (121)
361 3u5e_X 60S ribosomal protein L 43.7 54 0.0019 22.4 5.3 53 22-76 80-136 (142)
362 2zkr_s 60S ribosomal protein L 43.4 49 0.0017 23.0 5.1 53 22-76 94-150 (156)
363 4a17_R RPL23A, 60S ribosomal p 40.2 69 0.0024 22.1 5.5 53 22-76 88-144 (150)
364 3p8b_B Transcription antitermi 39.9 38 0.0013 22.8 4.1 34 49-82 33-66 (152)
365 4e8u_A Putative uncharacterize 36.2 28 0.00096 24.6 3.0 48 22-69 14-72 (172)
366 3iz5_X 60S ribosomal protein L 34.5 49 0.0017 22.9 4.0 52 22-75 90-145 (152)
367 4bby_A Alkyldihydroxyacetoneph 34.3 37 0.0013 28.5 3.9 46 37-82 358-411 (658)
368 1ytr_A Bacteriocin plantaricin 31.2 25 0.00086 16.5 1.4 12 36-47 14-25 (26)
369 1wvf_A 4-cresol dehydrogenase 29.6 39 0.0013 27.3 3.3 38 39-76 218-261 (520)
370 1o57_A PUR operon repressor; p 29.6 1.1E+02 0.0038 22.9 5.7 42 39-80 47-88 (291)
371 3swz_A Steroid 17-alpha-hydrox 29.5 97 0.0033 23.9 5.5 54 20-77 14-69 (494)
372 2e7g_A Putative ribosome-bindi 26.9 1.4E+02 0.0046 19.6 5.5 35 46-80 43-79 (129)
373 4eyt_A Telomerase associated p 26.6 1.3E+02 0.0044 19.2 10.0 60 18-82 10-69 (129)
374 2gu3_A YPMB protein; APC1927, 26.6 86 0.0029 20.9 4.1 28 25-54 68-98 (136)
375 3ulj_A LIN28B, DNA-binding pro 25.4 43 0.0015 20.9 2.2 15 52-66 13-27 (90)
376 2xk0_A Polycomb protein PCL; t 25.3 45 0.0015 20.0 2.1 14 57-70 39-52 (69)
377 1ik9_C DNA ligase IV; DNA END 24.5 49 0.0017 17.2 2.0 13 34-46 22-34 (37)
378 1cqm_A Ribosomal protein S6; a 24.4 1.3E+02 0.0044 18.7 4.5 51 23-77 7-76 (101)
379 3fry_A Probable copper-exporti 24.3 99 0.0034 17.1 5.2 55 20-78 6-60 (73)
380 3pm0_A Cypib1, cytochrome P450 24.0 1.2E+02 0.0041 23.3 5.1 52 21-76 16-67 (507)
381 3fut_A Dimethyladenosine trans 23.6 88 0.003 23.1 4.0 31 20-53 110-140 (271)
382 4aj5_1 SKA3, spindle and kinet 23.0 29 0.00098 22.4 1.0 11 37-47 91-101 (101)
383 1gcc_A Ethylene responsive ele 22.1 62 0.0021 18.6 2.3 28 50-77 16-44 (63)
384 3n9y_A Cholesterol SIDE-chain 21.4 1.7E+02 0.0057 22.4 5.4 38 36-77 35-72 (487)
385 2od0_A Hypothetical protein VP 21.2 84 0.0029 19.6 3.1 22 34-55 4-25 (105)
386 2k5n_A Putative cold-shock pro 21.0 77 0.0026 18.8 2.7 13 56-68 11-23 (74)
387 3e6i_A CYPIIE1, P450-J, cytoch 20.3 1.3E+02 0.0044 22.9 4.5 53 21-77 17-70 (476)
388 1eij_A Hypothetical protein MT 20.2 58 0.002 20.0 2.0 20 26-47 50-69 (80)
No 1
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.93 E-value=2.7e-25 Score=165.08 Aligned_cols=110 Identities=14% Similarity=0.168 Sum_probs=96.0
Q ss_pred CCCCeEEEeccC-CCCCCCHHHHHHHhhcCCCeeEEEEcCCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCeeEEEEe
Q 043011 18 ERSPNLFVANCG-PAVGVSYEAIGSVFSAFGDVKGIYAADDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRFLHISY 96 (133)
Q Consensus 18 ~~~~~L~V~Nl~-~~~~vte~~L~~~F~~fG~V~~v~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~l~V~~ 96 (133)
.++++|||+||+ +. +|+++|+++|++||+|.+|++..+++|||||+|.+.++|++|++.|||+. +.|++|+|.|
T Consensus 2 ~~~~~l~V~nL~~~~--~~~~~L~~~F~~~G~v~~v~i~~~~~g~afV~f~~~~~A~~Ai~~lng~~---~~g~~l~v~~ 76 (205)
T 3tyt_A 2 ADSPVLMVYGLDQSK--MNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNF---MFGQKMNVCV 76 (205)
T ss_dssp CCCSEEEEECCCTTT--CCHHHHHHHHTTTSCEEEEEECTTSTTCEEEEESSHHHHHHHHHHHTTCE---ETTEECEEEE
T ss_pred CCCCEEEEeCCCccc--CCHHHHHHHHHhcCCeEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCE---ECCceEEEEE
Confidence 468999999999 79 99999999999999999999987789999999999999999999999999 9999999999
Q ss_pred eecCC--CCCC--------------------------------CCCcceeEeeecCCCCCchhhhhhhcc
Q 043011 97 SVLED--SPAT--------------------------------RHITSSVPVSLVASELNIPGLHSCFMT 132 (133)
Q Consensus 97 a~~~~--~~~~--------------------------------~~~~~~l~v~nl~~~~~~~~l~~~f~~ 132 (133)
|+.+. +++. .....+|+|+|||.+++..+|+++|..
T Consensus 77 s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~ 146 (205)
T 3tyt_A 77 SKQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDE 146 (205)
T ss_dssp CSCSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHH
T ss_pred ccCCccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHh
Confidence 97543 1100 012346999999999999999999963
No 2
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.92 E-value=1.5e-25 Score=152.33 Aligned_cols=101 Identities=18% Similarity=0.217 Sum_probs=72.1
Q ss_pred CCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEc---CCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCeeEEEE
Q 043011 19 RSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAA---DDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRFLHIS 95 (133)
Q Consensus 19 ~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~---~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~l~V~ 95 (133)
.+.+|||+||+++ +|+++|+++|++||+|.+|++. ..+||||||+|.+.++|++|++.|||+. +.|+.|+|+
T Consensus 4 ~~~~lfV~nLp~~--~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~---~~g~~i~V~ 78 (115)
T 4f25_A 4 GSGNIFIKNLDKS--IDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGML---LNDRKVFVG 78 (115)
T ss_dssp -CCEEEEESCCTT--CCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCE---ETTEECEEE
T ss_pred CCCEEEECCCCCC--CCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCE---ECCEEEEEE
Confidence 4678999999999 9999999999999999999874 2358999999999999999999999999 999999999
Q ss_pred eeecCCCC-----CCCCCcceeEeeecCCCCCch
Q 043011 96 YSVLEDSP-----ATRHITSSVPVSLVASELNIP 124 (133)
Q Consensus 96 ~a~~~~~~-----~~~~~~~~l~v~nl~~~~~~~ 124 (133)
++.++..+ .......+|+|+||+++++..
T Consensus 79 ~a~~~~~~~~~~~~~~~~~~~lyv~Nl~~~~T~~ 112 (115)
T 4f25_A 79 RFKSRKEREAELGARAKEFTNVYIKNFGPGSTRA 112 (115)
T ss_dssp ESSCCCC---------------------------
T ss_pred ECCCccccccccccccCCCCceEeCCCCCCcccc
Confidence 99877621 112222459999999987643
No 3
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.91 E-value=5.1e-24 Score=150.34 Aligned_cols=106 Identities=18% Similarity=0.196 Sum_probs=96.0
Q ss_pred CCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEcC-----CCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCeeEE
Q 043011 19 RSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAAD-----DSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRFLH 93 (133)
Q Consensus 19 ~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~~-----~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~l~ 93 (133)
++++|||+|||++ +++++|+++|++||+|.++.+.. .++|||||+|.+.++|++|++.|||.. +.|+.|+
T Consensus 2 ~~~~l~v~nlp~~--~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~---~~g~~l~ 76 (168)
T 1b7f_A 2 SNTNLIVNYLPQD--MTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGIT---VRNKRLK 76 (168)
T ss_dssp CCSEEEEECCCTT--CCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCE---ETTEECE
T ss_pred CccEEEEeCCCCC--CCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCE---eCCcEEE
Confidence 6799999999999 99999999999999999998742 357999999999999999999999999 9999999
Q ss_pred EEeeecCCCCCCCCCcceeEeeecCCCCCchhhhhhhcc
Q 043011 94 ISYSVLEDSPATRHITSSVPVSLVASELNIPGLHSCFMT 132 (133)
Q Consensus 94 V~~a~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~ 132 (133)
|.|+.++. ......+|+|+|||..++..+|+++|..
T Consensus 77 v~~~~~~~---~~~~~~~l~v~nl~~~~t~~~l~~~f~~ 112 (168)
T 1b7f_A 77 VSYARPGG---ESIKDTNLYVTNLPRTITDDQLDTIFGK 112 (168)
T ss_dssp EEECCCCS---STTTTCEEEEESCCTTCCHHHHHHHHTS
T ss_pred EEecCCCc---ccCCCCCEEEeCCCCCCCHHHHHHhhhc
Confidence 99998776 3344567999999999999999999964
No 4
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.91 E-value=4.9e-24 Score=149.83 Aligned_cols=106 Identities=21% Similarity=0.282 Sum_probs=95.4
Q ss_pred CCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEc-----CCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCeeEE
Q 043011 19 RSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAA-----DDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRFLH 93 (133)
Q Consensus 19 ~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~-----~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~l~ 93 (133)
++++|||+|||++ +++++|+++|++||+|.++.+. +.++|||||+|.+.++|++|++.|||.. +.|+.|+
T Consensus 1 s~~~l~v~nlp~~--~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~---~~g~~l~ 75 (167)
T 1fxl_A 1 SKTNLIVNYLPQN--MTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLR---LQTKTIK 75 (167)
T ss_dssp CCSEEEEESCCTT--CCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCE---ETTEECE
T ss_pred CcceEEEcCCCCC--CCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCc---cCCceEE
Confidence 4789999999999 9999999999999999999874 3356999999999999999999999999 9999999
Q ss_pred EEeeecCCCCCCCCCcceeEeeecCCCCCchhhhhhhcc
Q 043011 94 ISYSVLEDSPATRHITSSVPVSLVASELNIPGLHSCFMT 132 (133)
Q Consensus 94 V~~a~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~ 132 (133)
|.++.+.. ......+|+|+|||..++..+|+++|..
T Consensus 76 v~~~~~~~---~~~~~~~l~v~nl~~~~t~~~l~~~f~~ 111 (167)
T 1fxl_A 76 VSYARPSS---ASIRDANLYVSGLPKTMTQKELEQLFSQ 111 (167)
T ss_dssp EEECCCCC---GGGTTCEEEEESCCTTCCHHHHHHHHGG
T ss_pred EEecCCCc---ccCCCCcEEECCCCCcCCHHHHHHHHHh
Confidence 99998776 3334467999999999999999999964
No 5
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.91 E-value=2.1e-24 Score=159.85 Aligned_cols=110 Identities=15% Similarity=0.212 Sum_probs=95.3
Q ss_pred CCCCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEc-----CCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCee
Q 043011 17 DERSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAA-----DDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRF 91 (133)
Q Consensus 17 ~~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~-----~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~ 91 (133)
..|.++|||+||+++ +|+++|+++|++||+|.+|++. ++++|||||+|.+.++|++|++.+||.. +.|+.
T Consensus 12 ~~p~~tlfVgnLp~~--~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~---~~g~~ 86 (213)
T 4f02_A 12 SYPMASLYVGDLHPD--VTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDV---IKGKP 86 (213)
T ss_dssp ---CCEEEEESCCTT--CCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCE---ETTEE
T ss_pred CCCCcEEEEeCCCCC--CCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhh---cCCcc
Confidence 457899999999999 9999999999999999999874 3568999999999999999999999999 99999
Q ss_pred EEEEeeecCCCCCCCCCcceeEeeecCCCCCchhhhhhhcc
Q 043011 92 LHISYSVLEDSPATRHITSSVPVSLVASELNIPGLHSCFMT 132 (133)
Q Consensus 92 l~V~~a~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~ 132 (133)
|++.++..... .......+|+|+||+..++..+|+++|..
T Consensus 87 i~~~~~~~~~~-~~~~~~~~l~v~nl~~~~t~~~l~~~F~~ 126 (213)
T 4f02_A 87 VRIMWSQRDPS-LRKSGVGNIFIKNLDKSIDNKALYDTFSA 126 (213)
T ss_dssp CEEEECCCCTH-HHHHCTTEEEEESCCTTCCHHHHHHHHGG
T ss_pred ccccccccccc-ccccccccceECCcccccHHHHHHHHHhh
Confidence 99999877651 12223457999999999999999999974
No 6
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.90 E-value=9.1e-24 Score=148.33 Aligned_cols=106 Identities=17% Similarity=0.276 Sum_probs=94.8
Q ss_pred CeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEc----CCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCeeEEEEe
Q 043011 21 PNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAA----DDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRFLHISY 96 (133)
Q Consensus 21 ~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~----~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~l~V~~ 96 (133)
++|||+|||++ +|+++|+++|++||+|.+|.+. ++++|||||+|.+.++|++|++.|||.. +.|+.|+|.+
T Consensus 1 R~l~V~nlp~~--~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~---~~g~~i~v~~ 75 (166)
T 3md3_A 1 RVLYVGNLDKA--ITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQ---IENNIVKINW 75 (166)
T ss_dssp CEEEEEEEETT--CCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCE---ETTEECEEEE
T ss_pred CEEEECCCCCc--CCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCc---cCCCeeEEEE
Confidence 68999999999 9999999999999999999884 3468999999999999999999999999 9999999999
Q ss_pred eecCCCCCCCCCcceeEeeecCCCCCchhhhhhhcc
Q 043011 97 SVLEDSPATRHITSSVPVSLVASELNIPGLHSCFMT 132 (133)
Q Consensus 97 a~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~ 132 (133)
+.+... .......+|+|+|||..++..+|+++|..
T Consensus 76 ~~~~~~-~~~~~~~~l~v~nl~~~~t~~~l~~~f~~ 110 (166)
T 3md3_A 76 AFQSQQ-SSSDDTFNLFVGDLNVNVDDETLRNAFKD 110 (166)
T ss_dssp CCCCCC-CCCTTCEEEEEESCCTTCCHHHHHHHHTT
T ss_pred cCCCCC-CCCCCCceEEECCCCCCCCHHHHHHHHhc
Confidence 987763 23334567999999999999999999964
No 7
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.90 E-value=7.3e-24 Score=140.85 Aligned_cols=80 Identities=23% Similarity=0.293 Sum_probs=72.6
Q ss_pred CCCCCCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEc-----CCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCC
Q 043011 15 GEDERSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAA-----DDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLAN 89 (133)
Q Consensus 15 ~~~~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~-----~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~g 89 (133)
.......+|||+|||++ +|+++|+++|++||+|.++.+. +.++|||||+|.+.++|++|++.|||.. +.|
T Consensus 14 n~~~~gt~lfV~nLp~~--~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~---~~g 88 (99)
T 4fxv_A 14 NLYFQGTNLIVNYLPQN--MTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLR---LQS 88 (99)
T ss_dssp --CCCCSEEEEESCCTT--CCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCE---ETT
T ss_pred cccCCCCEEEEeCCCCC--CCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCE---ECC
Confidence 34456789999999999 9999999999999999999874 4568999999999999999999999999 999
Q ss_pred eeEEEEeeec
Q 043011 90 RFLHISYSVL 99 (133)
Q Consensus 90 r~l~V~~a~~ 99 (133)
++|+|+||+|
T Consensus 89 r~l~V~~AkP 98 (99)
T 4fxv_A 89 KTIKVSYARP 98 (99)
T ss_dssp EECEEEECCB
T ss_pred EEEEEEEeeC
Confidence 9999999976
No 8
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.90 E-value=4.6e-23 Score=154.16 Aligned_cols=112 Identities=19% Similarity=0.273 Sum_probs=98.1
Q ss_pred CCCCCCeEEEeccCC-CCCCCHHHHHHHhhcCCCeeEEEEcCCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCeeEEE
Q 043011 16 EDERSPNLFVANCGP-AVGVSYEAIGSVFSAFGDVKGIYAADDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRFLHI 94 (133)
Q Consensus 16 ~~~~~~~L~V~Nl~~-~~~vte~~L~~~F~~fG~V~~v~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~l~V 94 (133)
...++++|||+||++ + +++++|+++|++||+|.+|.+..+.+|||||+|.+.++|++|++.|||.. +.|+.|.|
T Consensus 30 ~~~~~~~l~V~nLp~~~--~te~~L~~~F~~~G~i~~v~i~~~~~g~afV~F~~~~~A~~Ai~~l~g~~---~~g~~l~v 104 (229)
T 2adc_A 30 AGAGNSVLLVSNLNPER--VTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHK---LHGKPIRI 104 (229)
T ss_dssp GCCCCSEEEEESCCTTT--CCHHHHHHHHHHHTCEEEEEECCTTSCCEEEEESCHHHHHHHHHHHTTCB---CSSSBCEE
T ss_pred CCCCCCEEEEeCCCccc--CCHHHHHHHHHhCCCeEEEEEEECCCCEEEEEECCHHHHHHHHHHhCCCe---ECCeEEEE
Confidence 345789999999999 9 99999999999999999999977779999999999999999999999999 99999999
Q ss_pred EeeecCC---CCCC-----------------------------CCCcceeEeeecCCCCCchhhhhhhcc
Q 043011 95 SYSVLED---SPAT-----------------------------RHITSSVPVSLVASELNIPGLHSCFMT 132 (133)
Q Consensus 95 ~~a~~~~---~~~~-----------------------------~~~~~~l~v~nl~~~~~~~~l~~~f~~ 132 (133)
+|+.++. ++.+ .....+|+|+||+..++..+|+++|..
T Consensus 105 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~ 174 (229)
T 2adc_A 105 TLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSS 174 (229)
T ss_dssp ECCSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHT
T ss_pred EEecCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHH
Confidence 9998653 1100 112467999999999999999999964
No 9
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.89 E-value=4.4e-23 Score=157.13 Aligned_cols=112 Identities=17% Similarity=0.239 Sum_probs=102.0
Q ss_pred CCCCCCCCCCCCCCCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEcCCCCCeEEEEECCHHHHHHHHHHhcCCCCC
Q 043011 6 NSRFRRPKAGEDERSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAADDSGARVIVSYFDEGSAQAAFNSLHSRPCP 85 (133)
Q Consensus 6 ~~~f~~p~~~~~~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~~~ 85 (133)
.+.|.+|.+....+.++|||+||+++ +|+++|+++|++||+|.+|.+ .+++|||||+|.+.++|.+|+..|||..
T Consensus 8 ~~~~~~p~~~~~~~~~~l~V~nLp~~--~te~~l~~~F~~~G~i~~v~i-~~~kg~afV~f~~~~~A~~A~~~l~g~~-- 82 (261)
T 3sde_A 8 IKSFLKPGEKTYTQRCRLFVGNLPTD--ITEEDFKRLFERYGEPSEVFI-NRDRGFGFIRLESRTLAEIAKAELDGTI-- 82 (261)
T ss_dssp CCCCCCTTCCSSCGGGEEEEESCCTT--CCHHHHHHHTGGGCCCSEEEE-ETTTTEEEEECSSHHHHHHHHHHHTTCE--
T ss_pred ccccCCCCCCCCCCCCEEEEECCCCC--CCHHHHHHHHHhcCCEEEEEE-eCCCcEEEEEECCHHHHHHHHHHcCCcE--
Confidence 35667777667778899999999999 999999999999999999999 5679999999999999999999999999
Q ss_pred CCCCeeEEEEeeecCCCCCCCCCcceeEeeecCCCCCchhhhhhhcc
Q 043011 86 DLANRFLHISYSVLEDSPATRHITSSVPVSLVASELNIPGLHSCFMT 132 (133)
Q Consensus 86 ~l~gr~l~V~~a~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~ 132 (133)
+.|+.|.|.|+.+. .+|+|+|||..++..+|+++|..
T Consensus 83 -i~g~~l~v~~a~~~---------~~l~v~nl~~~~t~~~l~~~F~~ 119 (261)
T 3sde_A 83 -LKSRPLRIRFATHG---------AALTVKNLSPVVSNELLEQAFSQ 119 (261)
T ss_dssp -ETTEECEEEECCCS---------SEEEEESCCTTCCHHHHHHHHGG
T ss_pred -ECCceeEeeecccC---------CcccccCCCCCCCHHHHHHHHHh
Confidence 99999999998653 46999999999999999999964
No 10
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.89 E-value=1.3e-22 Score=135.80 Aligned_cols=80 Identities=19% Similarity=0.198 Sum_probs=73.1
Q ss_pred CCCCCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEcCCCCCeEEEEECCHHHHHHHHHHhc--CCCCCCCCCeeEE
Q 043011 16 EDERSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAADDSGARVIVSYFDEGSAQAAFNSLH--SRPCPDLANRFLH 93 (133)
Q Consensus 16 ~~~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~~~~kg~afV~f~~~~~A~~A~~~l~--g~~~~~l~gr~l~ 93 (133)
...|+++|||+||+++ +++++|+++|++||+|.+|.+. +.||||||+|.+.++|++|++.|+ +.. +.|++|+
T Consensus 11 ~~~p~~~l~V~nLp~~--~te~~L~~~F~~fG~v~~v~i~-~~kg~aFVef~~~~~A~~Ai~~l~~~~~~---~~Gr~l~ 84 (101)
T 2cq1_A 11 DGAPSRVLHIRKLPGE--VTETEVIALGLPFGKVTNILML-KGKNQAFLELATEEAAITMVNYYSAVTPH---LRNQPIY 84 (101)
T ss_dssp CSSCCSEEEEESCCTT--CCHHHHHHTTTTTSCEEEEEEE-TTTTEEEEEESSHHHHHHHHHHHHHSCCE---ETTEECE
T ss_pred cCCCCCEEEEeCCCCC--CCHHHHHHHHHhcCCEEEEEEE-CCCCEEEEEECCHHHHHHHHHHhccCCce---ECCcEEE
Confidence 3468899999999999 9999999999999999999884 459999999999999999999875 667 9999999
Q ss_pred EEeeecCC
Q 043011 94 ISYSVLED 101 (133)
Q Consensus 94 V~~a~~~~ 101 (133)
|+|+.++.
T Consensus 85 V~~a~~~~ 92 (101)
T 2cq1_A 85 IQYSNHKE 92 (101)
T ss_dssp EEECSCSS
T ss_pred EEEcCccc
Confidence 99998876
No 11
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.89 E-value=3.7e-23 Score=138.55 Aligned_cols=82 Identities=16% Similarity=0.161 Sum_probs=74.1
Q ss_pred CCCCCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEcCCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCeeEEEE
Q 043011 16 EDERSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAADDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRFLHIS 95 (133)
Q Consensus 16 ~~~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~l~V~ 95 (133)
..+|+++|||+|||++ +|+++|+++|++||+|.++.+. +.||||||+|.+.++|.+|++.|+|.. ..+.||+|+|+
T Consensus 17 ~~~ps~~l~V~NLp~~--~te~~L~~lF~~fG~V~~v~i~-~~kg~AFVef~~~~~A~~Av~~ln~~~-~~i~Gr~i~V~ 92 (100)
T 3r27_A 17 KTPASPVVHIRGLIDG--VVEADLVEALQEFGPISYVVVM-PKKRQALVEFEDVLGACNAVNYAADNQ-IYIAGHPAFVN 92 (100)
T ss_dssp CCCCCSEEEEESCCTT--CCHHHHHHHHGGGSCEEEEEEE-TTTTEEEEEESSHHHHHHHHHHHHHSC-EEETTEEEEEE
T ss_pred cCCCCcEEEEeCCCCC--CCHHHHHHHHhccCCEEEEEEE-cCCCEEEEEECCHHHHHHHHHHhcCCC-ceeCCcEEEEE
Confidence 5678999999999999 9999999999999999999984 579999999999999999999999874 11569999999
Q ss_pred eeecCC
Q 043011 96 YSVLED 101 (133)
Q Consensus 96 ~a~~~~ 101 (133)
||+++.
T Consensus 93 ~S~~k~ 98 (100)
T 3r27_A 93 YSTSQK 98 (100)
T ss_dssp ECSCSC
T ss_pred eccccc
Confidence 998764
No 12
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.89 E-value=2.3e-23 Score=137.64 Aligned_cols=94 Identities=16% Similarity=0.258 Sum_probs=81.4
Q ss_pred CeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEcCCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCeeEEEEeeecC
Q 043011 21 PNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAADDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRFLHISYSVLE 100 (133)
Q Consensus 21 ~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~l~V~~a~~~ 100 (133)
++|||+||+++ +|+++|+++|++||+|.++.+..+++|||||+|.+.++|++|++.|||.. +.|+.|+|+|+.++
T Consensus 1 ~~l~V~nLp~~--~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~---~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTG--AGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKV---ICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSS--CSHHHHHHHHHHHCCCSEEEEESSSSSEEEEECSSHHHHHHHHHHHHHSC---SSSCCCEEEESSSC
T ss_pred CEEEEeCCCCC--CCHHHHHHHHHhcCCeEEEEEeeCCCCEEEEEECCHHHHHHHHHHHCCCe---ECCcEEEEEEccCC
Confidence 48999999999 99999999999999999999865579999999999999999999999999 99999999999887
Q ss_pred CCC-------CCCCCcceeEeeecCC
Q 043011 101 DSP-------ATRHITSSVPVSLVAS 119 (133)
Q Consensus 101 ~~~-------~~~~~~~~l~v~nl~~ 119 (133)
... .......+++||+|+.
T Consensus 76 ~~~~~~~~~~~~~~~~~~ifvg~L~h 101 (101)
T 2hvz_A 76 PRRSRFDRPPARRKLLEVLFNGPLEH 101 (101)
T ss_dssp CCSSCCCSCCCSCCCCSCCCSCCCCC
T ss_pred CCcccCCCCCccccCCCceecCCCCC
Confidence 621 1112245689998863
No 13
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.89 E-value=2.6e-23 Score=140.39 Aligned_cols=81 Identities=17% Similarity=0.178 Sum_probs=73.9
Q ss_pred CCCCCCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEcCCCCCeEEEEECCHHHHHHHHHHhcC--CCCCCCCCeeE
Q 043011 15 GEDERSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAADDSGARVIVSYFDEGSAQAAFNSLHS--RPCPDLANRFL 92 (133)
Q Consensus 15 ~~~~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~~~~kg~afV~f~~~~~A~~A~~~l~g--~~~~~l~gr~l 92 (133)
+...++++|||+||+++ +|+++|+++|++||+|.+|.+. +.||||||+|.+.++|++|++.|++ .. +.||+|
T Consensus 11 ~~~~~~~~LfV~nLp~~--vte~dL~~lF~~fG~V~~v~i~-~~kGfaFVeF~~~~~A~~Ai~~l~~~~~~---l~Gr~l 84 (105)
T 1sjq_A 11 GSGVPSRVIHIRKLPID--VTEGEVISLGLPFGKVTNLLML-KGKNQAFIEMNTEEAANTMVNYYTSVTPV---LRGQPI 84 (105)
T ss_dssp -CCCCCCEEEECSCCTT--SCHHHHHHHHHHHCCEEEEEEE-TTTTEEEEEESSHHHHHHHHHHHTTSCCE---ETTEEC
T ss_pred CCCCCCCEEEEeCCCCC--CCHHHHHHHHHhcCCEEEEEEE-cCCCEEEEEECCHHHHHHHHHHhccCCce---ECCEEE
Confidence 35578999999999999 9999999999999999999985 4599999999999999999999874 67 999999
Q ss_pred EEEeeecCC
Q 043011 93 HISYSVLED 101 (133)
Q Consensus 93 ~V~~a~~~~ 101 (133)
+|+||.++.
T Consensus 85 ~V~~A~~~~ 93 (105)
T 1sjq_A 85 YIQFSNHKE 93 (105)
T ss_dssp CBCCCSSSS
T ss_pred EEEEcCCCC
Confidence 999998886
No 14
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.89 E-value=5.4e-23 Score=148.52 Aligned_cols=111 Identities=18% Similarity=0.246 Sum_probs=93.3
Q ss_pred CCCCCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEc-----CCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCe
Q 043011 16 EDERSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAA-----DDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANR 90 (133)
Q Consensus 16 ~~~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~-----~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr 90 (133)
...+.++|||+|||++ +|+++|+++|++||+|.+|.+. +.++|||||+|.+.++|++|++. +|.. +.|+
T Consensus 9 ~~~~~~~l~V~nLp~~--~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~---~~g~ 82 (196)
T 1l3k_A 9 EPEQLRKLFIGGLSFE--TTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHK---VDGR 82 (196)
T ss_dssp CCGGGGEEEEESCCTT--CCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCE---ETTE
T ss_pred CCCCCCEEEEeCCCCC--CCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCE---ECCE
Confidence 3456899999999999 9999999999999999999874 34689999999999999999986 8888 9999
Q ss_pred eEEEEeeecCCC---CCCCCCcceeEeeecCCCCCchhhhhhhcc
Q 043011 91 FLHISYSVLEDS---PATRHITSSVPVSLVASELNIPGLHSCFMT 132 (133)
Q Consensus 91 ~l~V~~a~~~~~---~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~ 132 (133)
.|.|.++.++.. +.......+|+|+|||..++..+|+++|..
T Consensus 83 ~l~v~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~ 127 (196)
T 1l3k_A 83 VVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQ 127 (196)
T ss_dssp ECEEEECCC-----------CCSEEEEECCTTTCCHHHHHHHHTT
T ss_pred EeeeecccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHhc
Confidence 999999987652 222334467999999999999999999974
No 15
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.89 E-value=2.1e-22 Score=132.24 Aligned_cols=80 Identities=24% Similarity=0.409 Sum_probs=74.5
Q ss_pred CCCCCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEcCCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCC--CeeEE
Q 043011 16 EDERSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAADDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLA--NRFLH 93 (133)
Q Consensus 16 ~~~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~--gr~l~ 93 (133)
...++++|||+||+++ +++++|+++|++||+|.+|.+. ..+|||||+|.+.++|++|++.|||.. +. |+.|+
T Consensus 13 ~~~~~~~l~V~nlp~~--~t~~~l~~~F~~~G~v~~v~~~-~~~g~afV~f~~~~~A~~A~~~l~g~~---~~~~g~~l~ 86 (97)
T 1why_A 13 KANPTTRLWVGGLGPN--TSLAALAREFDRFGSIRTIDHV-KGDSFAYIQYESLDAAQAACAKMRGFP---LGGPDRRLR 86 (97)
T ss_dssp CCCCCSCEEEECCCSS--CCHHHHHHHHHTTSCEEEEEEC-SSSCCEEEEESSHHHHHHHHHHHTTCB---CSSSSCBCE
T ss_pred CCCCCCEEEEeCCCCC--CCHHHHHHHHHhcCCeeEEEEe-CCCCEEEEEECCHHHHHHHHHHHCCCE---eCCCCcEEE
Confidence 3457899999999999 9999999999999999999995 458999999999999999999999999 99 99999
Q ss_pred EEeeecCC
Q 043011 94 ISYSVLED 101 (133)
Q Consensus 94 V~~a~~~~ 101 (133)
|+|+.++.
T Consensus 87 V~~a~~~~ 94 (97)
T 1why_A 87 VDFAKSGP 94 (97)
T ss_dssp EEECCCCC
T ss_pred EEECCCCC
Confidence 99998875
No 16
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.89 E-value=5.8e-23 Score=139.04 Aligned_cols=81 Identities=11% Similarity=0.145 Sum_probs=74.7
Q ss_pred CCCCCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEc-----CCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCe
Q 043011 16 EDERSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAA-----DDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANR 90 (133)
Q Consensus 16 ~~~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~-----~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr 90 (133)
...|.++|||+||+++ +++++|+++|++||+|.+|.+. ++++|||||+|.+.++|++|++.|||+. +.|+
T Consensus 2 g~~p~~~lfV~nL~~~--~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~---~~gr 76 (110)
T 3s8s_A 2 GQIPLKEVTFARLNDN--VRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTS---VMGN 76 (110)
T ss_dssp CCSCCCEEEEESCCTT--CCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCE---ETTE
T ss_pred CCCCCcEEEEECCCCC--CCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCE---ECCe
Confidence 3467899999999999 9999999999999999999874 4578999999999999999999999999 9999
Q ss_pred eEEEEeeecCC
Q 043011 91 FLHISYSVLED 101 (133)
Q Consensus 91 ~l~V~~a~~~~ 101 (133)
.|+|+++....
T Consensus 77 ~i~V~~a~~~~ 87 (110)
T 3s8s_A 77 IIHAQLDIKGQ 87 (110)
T ss_dssp ECEEEECSTTH
T ss_pred EEEEEECCCCc
Confidence 99999997664
No 17
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.89 E-value=1.5e-22 Score=147.17 Aligned_cols=109 Identities=19% Similarity=0.280 Sum_probs=95.8
Q ss_pred CCCeEEEeccCC-CCCCCHHHHHHHhhcCCCeeEEEEcCCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCeeEEEEee
Q 043011 19 RSPNLFVANCGP-AVGVSYEAIGSVFSAFGDVKGIYAADDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRFLHISYS 97 (133)
Q Consensus 19 ~~~~L~V~Nl~~-~~~vte~~L~~~F~~fG~V~~v~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~l~V~~a 97 (133)
.+++|||+||++ + +++++|+++|++||+|.+|.+..+.+|||||+|.+.++|++|++.|||.. +.|+.|+|.|+
T Consensus 2 ~~~~l~v~nlp~~~--~~~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~~~~---~~g~~l~v~~a 76 (198)
T 1qm9_A 2 GNSVLLVSNLNPER--VTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHK---LHGKPIRITLS 76 (198)
T ss_dssp CCCEEEEECCCSSS--CCHHHHHHHHHTTCCCSEEECSTTCSSCCEEECTTTHHHHHHHHHHTTCC---CSSCCCEEEEC
T ss_pred CCcEEEEeCCCccc--CCHHHHHHHHHhcCCEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCe---ecCeEEEEEEe
Confidence 368999999999 9 99999999999999999999977779999999999999999999999999 99999999999
Q ss_pred ecCC---CCCC-----------------------------CCCcceeEeeecCCCCCchhhhhhhcc
Q 043011 98 VLED---SPAT-----------------------------RHITSSVPVSLVASELNIPGLHSCFMT 132 (133)
Q Consensus 98 ~~~~---~~~~-----------------------------~~~~~~l~v~nl~~~~~~~~l~~~f~~ 132 (133)
.++. ++.. .....+|+|+||+..++..+|+++|..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~ 143 (198)
T 1qm9_A 77 KHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSS 143 (198)
T ss_dssp CCCSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHH
T ss_pred cCCCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHH
Confidence 8653 1100 112567999999999999999999963
No 18
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.88 E-value=1.1e-22 Score=144.09 Aligned_cols=110 Identities=15% Similarity=0.207 Sum_probs=94.0
Q ss_pred CCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEcC-------CCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCee
Q 043011 19 RSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAAD-------DSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRF 91 (133)
Q Consensus 19 ~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~~-------~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~ 91 (133)
.+++|||+|||++ +|+++|+++|++||+|.++.+.. +++|||||+|.+.++|++|++.|||.....-.++.
T Consensus 2 ~~~~l~V~nLp~~--~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~ 79 (175)
T 3nmr_A 2 DAIKMFVGQVPRT--WSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHP 79 (175)
T ss_dssp CCEEEEEESCCTT--CCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSC
T ss_pred CceEEEEeCCCCC--CCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccc
Confidence 4689999999999 99999999999999999998742 56899999999999999999999998822223788
Q ss_pred EEEEeeecCCCCCCCCCcceeEeeecCCCCCchhhhhhhcc
Q 043011 92 LHISYSVLEDSPATRHITSSVPVSLVASELNIPGLHSCFMT 132 (133)
Q Consensus 92 l~V~~a~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~ 132 (133)
+.+.++.++.. ......+|+|+|||..++..+|+++|..
T Consensus 80 ~~~~~~~~~~~--~~~~~~~l~v~nl~~~~t~~~l~~~F~~ 118 (175)
T 3nmr_A 80 IQMKPADSEKN--NAVEDRKLFIGMISKKCTENDIRVMFSS 118 (175)
T ss_dssp CEEEECGGGCC--SCGGGSEEEEESCCTTCCHHHHHHHHGG
T ss_pred eEEcccccccc--ccCCCCeEEEcCCCCcCCHHHHHHHHHh
Confidence 88888876653 3345567999999999999999999964
No 19
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.88 E-value=4.1e-22 Score=152.11 Aligned_cols=81 Identities=19% Similarity=0.391 Sum_probs=74.1
Q ss_pred CCCCCCeEEEeccCCCCCCCHHHHH----HHhhcCCCeeEEEEc--CCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCC
Q 043011 16 EDERSPNLFVANCGPAVGVSYEAIG----SVFSAFGDVKGIYAA--DDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLAN 89 (133)
Q Consensus 16 ~~~~~~~L~V~Nl~~~~~vte~~L~----~~F~~fG~V~~v~~~--~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~g 89 (133)
...++++|||+||+.+ +|+++|+ ++|++||+|.+|++. ++++|||||+|.+.++|++|++.|||.. +.|
T Consensus 5 ~~~~~~~l~V~nlp~~--~~~~~l~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~---~~g 79 (282)
T 3pgw_A 5 ETRPNHTIYINNLNEK--IKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFP---FYD 79 (282)
T ss_pred CCCCCCEEEEeCCCCC--CCHHHHHHHHHHHHhccCCeEEEEEcCCCCcceEEEEEECCHHHHHHHHHHhcCCe---eCC
Confidence 3567999999999999 9999977 899999999999984 4678999999999999999999999999 999
Q ss_pred eeEEEEeeecCC
Q 043011 90 RFLHISYSVLED 101 (133)
Q Consensus 90 r~l~V~~a~~~~ 101 (133)
+.|+|+|+..+.
T Consensus 80 ~~l~v~~a~~~~ 91 (282)
T 3pgw_A 80 KPMRIQYAKTDS 91 (282)
T ss_pred cEEEEEEeccCc
Confidence 999999997644
No 20
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.88 E-value=1.8e-22 Score=139.08 Aligned_cols=81 Identities=16% Similarity=0.151 Sum_probs=74.2
Q ss_pred CCCCCCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEcCCCCCeEEEEECCHHHHHHHHHHhcC--CCCCCCCCeeE
Q 043011 15 GEDERSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAADDSGARVIVSYFDEGSAQAAFNSLHS--RPCPDLANRFL 92 (133)
Q Consensus 15 ~~~~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~~~~kg~afV~f~~~~~A~~A~~~l~g--~~~~~l~gr~l 92 (133)
....|+++|||+||+++ +|+++|+++|++||+|.+|.+. +.||||||+|.+.++|++|++.|++ .. +.|++|
T Consensus 26 ~~~~ps~~LfVgNLp~~--vte~dL~~lF~~fG~V~~v~i~-~~kG~AFVeF~~~e~A~~Ai~~l~~~~~~---l~Gr~l 99 (119)
T 2ad9_A 26 SAGVPSRVIHIRKLPID--VTEGEVISLGLPFGKVTNLLML-KGKNQAFIEMNTEEAANTMVNYYTSVTPV---LRGQPI 99 (119)
T ss_dssp SCSSCCSEEEEESCCTT--CCHHHHHHHHTTTSCCCEEEEE-GGGTEEEEECSCHHHHHHHHHHHHHHCCC---BTTBCC
T ss_pred ccCCCCCEEEEeCCCCC--CCHHHHHHHHHhcCCEEEEEEe-CCCCEEEEEECCHHHHHHHHHHhccCCce---ECCeEE
Confidence 35668899999999999 9999999999999999999985 3589999999999999999999984 67 999999
Q ss_pred EEEeeecCC
Q 043011 93 HISYSVLED 101 (133)
Q Consensus 93 ~V~~a~~~~ 101 (133)
+|+||.++.
T Consensus 100 ~V~~a~~k~ 108 (119)
T 2ad9_A 100 YIQFSNHKE 108 (119)
T ss_dssp EEEECSSSS
T ss_pred EEEEccCCC
Confidence 999998887
No 21
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.88 E-value=4.1e-22 Score=131.30 Aligned_cols=82 Identities=17% Similarity=0.287 Sum_probs=76.0
Q ss_pred CCCCCCCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEcCCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCeeEE
Q 043011 14 AGEDERSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAADDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRFLH 93 (133)
Q Consensus 14 ~~~~~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~l~ 93 (133)
.....+.++|||+||+++ +++++|+++|++||+|.+|.+. +.+|||||+|.+.++|++|++.|||.. +.|++|+
T Consensus 9 ~~~~~~~~~l~V~nlp~~--~t~~~l~~~F~~~G~i~~v~~~-~~kg~afV~f~~~~~a~~a~~~l~g~~---~~g~~l~ 82 (99)
T 2cpj_A 9 EKTFTQRSRLFVGNLPPD--ITEEEMRKLFEKYGKAGEVFIH-KDKGFGFIRLETRTLAEIAKVELDNMP---LRGKQLR 82 (99)
T ss_dssp SCCCCCTTEEEEESCCTT--CCHHHHHHHTSTTCCCSEEEEE-TTTTEEEEECSSSHHHHHHHHHHTTCC---BTTBCCE
T ss_pred CCcCCCCCEEEEeCCCCC--CCHHHHHHHHhhcCCeEEEEEe-cCCCEEEEEECCHHHHHHHHHHhCCCE---eCCceEE
Confidence 344567899999999999 9999999999999999999984 569999999999999999999999999 9999999
Q ss_pred EEeeecCC
Q 043011 94 ISYSVLED 101 (133)
Q Consensus 94 V~~a~~~~ 101 (133)
|+|+.++.
T Consensus 83 v~~a~~~~ 90 (99)
T 2cpj_A 83 VRFACHSA 90 (99)
T ss_dssp EEESSCCS
T ss_pred EEEcCCCC
Confidence 99998876
No 22
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.88 E-value=2.2e-22 Score=135.11 Aligned_cols=82 Identities=11% Similarity=0.075 Sum_probs=72.8
Q ss_pred CCCCCCeEEEeccCC-CCCCCHHHHHHHhhcCCCeeEEEEcCCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCeeEEE
Q 043011 16 EDERSPNLFVANCGP-AVGVSYEAIGSVFSAFGDVKGIYAADDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRFLHI 94 (133)
Q Consensus 16 ~~~~~~~L~V~Nl~~-~~~vte~~L~~~F~~fG~V~~v~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~l~V 94 (133)
...|+++|||+||++ + +|++||+++|++||+|.+|.+. +.+|||||+|.+.++|++|++.|||.. ..+.||+|+|
T Consensus 11 ~~~p~~~l~V~nLp~~~--~te~dL~~lF~~fG~V~~v~i~-~~kg~aFVef~~~~~A~~Ai~~l~~~~-~~~~Gr~l~V 86 (102)
T 1x4d_A 11 RVETRRVVHIMDFQRGK--NLRYQLLQLVEPFGVISNHLIL-NKINEAFIEMATTEDAQAAVDYYTTTP-ALVFGKPVRV 86 (102)
T ss_dssp CCCCCCEEEEESCCCSS--SHHHHHHTTTGGGSCEEEEEEC-SSSSCEEEEESSHHHHHHHHHHHHHSC-CEETTEECEE
T ss_pred CCCCCCEEEEeCCCCCc--CCHHHHHHHHHhcCCEEEEEEE-cCCCEEEEEECCHHHHHHHHHHHcCCC-ceECCcEEEE
Confidence 345899999999999 9 9999999999999999999984 568999999999999999999998642 1289999999
Q ss_pred EeeecCC
Q 043011 95 SYSVLED 101 (133)
Q Consensus 95 ~~a~~~~ 101 (133)
+||....
T Consensus 87 ~~a~~~~ 93 (102)
T 1x4d_A 87 HLSQKYK 93 (102)
T ss_dssp EEECCCT
T ss_pred EECCCCC
Confidence 9998665
No 23
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.88 E-value=1.7e-22 Score=143.18 Aligned_cols=105 Identities=13% Similarity=0.119 Sum_probs=93.7
Q ss_pred CCCCeEEEeccCCCCCCCHHHHHHHhhcC----C-------CeeEEEEcCCCCCeEEEEECCHHHHHHHHHHhcCCCCCC
Q 043011 18 ERSPNLFVANCGPAVGVSYEAIGSVFSAF----G-------DVKGIYAADDSGARVIVSYFDEGSAQAAFNSLHSRPCPD 86 (133)
Q Consensus 18 ~~~~~L~V~Nl~~~~~vte~~L~~~F~~f----G-------~V~~v~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~ 86 (133)
.++++|||+|||++ +|+++|+++|++| | .|.++.+ .+++|||||+|.+.++|++|+ .|||..
T Consensus 2 r~~~~l~V~nLp~~--~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~-~~~~g~afV~f~~~~~A~~A~-~~~~~~--- 74 (172)
T 2g4b_A 2 GSARRLYVGNIPFG--ITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI-NQDKNFAFLEFRSVDETTQAM-AFDGII--- 74 (172)
T ss_dssp CGGGEEEEESCCTT--CCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEE-ETTTTEEEEEESSHHHHHHHG-GGTTCE---
T ss_pred CcccEEEEcCCCcc--cCHHHHHHHHHHHhhhcccccCCCCceeeeEe-cCCCCEEEEEeCCHHHHHHHH-HhCCcE---
Confidence 35789999999999 9999999999999 7 7888887 567999999999999999999 899999
Q ss_pred CCCeeEEEEeeecCCCCCCCCCcceeEeeecCCCCCchhhhhhhcc
Q 043011 87 LANRFLHISYSVLEDSPATRHITSSVPVSLVASELNIPGLHSCFMT 132 (133)
Q Consensus 87 l~gr~l~V~~a~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~ 132 (133)
+.|+.|+|.++.+..+ .....+|+|+|||..++..+|+++|..
T Consensus 75 ~~g~~i~v~~~~~~~~---~~~~~~l~v~nlp~~~t~~~l~~~f~~ 117 (172)
T 2g4b_A 75 FQGQSLKIRRPHDYQP---LPGAHKLFIGGLPNYLNDDQVKELLTS 117 (172)
T ss_dssp ETTEECEEECCSSCCC---CTTTTCEEEECCCTTCCHHHHHHHHHT
T ss_pred ecCceeeecCCcccCC---CCCCCEEEEEcCCCcCCHHHHHHHHHh
Confidence 9999999999876652 223467999999999999999999964
No 24
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.88 E-value=4.1e-22 Score=131.01 Aligned_cols=87 Identities=16% Similarity=0.226 Sum_probs=75.6
Q ss_pred CCCCCCCCCCCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEcCCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCC
Q 043011 10 RRPKAGEDERSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAADDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLAN 89 (133)
Q Consensus 10 ~~p~~~~~~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~g 89 (133)
.+|.......+++|||+||+++ +++++|+++|++||.|....+.++++|||||+|.+.++|++|++.|||.. +.|
T Consensus 9 ~~~~~~~~~~~~~l~V~nL~~~--~t~~~l~~~F~~~G~v~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~---~~g 83 (97)
T 2e5j_A 9 GSPPGEGAPLAADVYVGNLPRD--ARVSDLKRALRELGSVPLRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLR---LGT 83 (97)
T ss_dssp CCCCCSSSCCCCEEEEECCCTT--CCHHHHHHHHHHTTCCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCC---SSS
T ss_pred CCCCCCCCCCCCEEEEeCCCCc--CcHHHHHHHHHhcCCEEEEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCE---ECC
Confidence 3444445567899999999999 99999999999999996222346789999999999999999999999999 999
Q ss_pred eeEEEEeeecCC
Q 043011 90 RFLHISYSVLED 101 (133)
Q Consensus 90 r~l~V~~a~~~~ 101 (133)
+.|+|+++.++.
T Consensus 84 ~~l~V~~a~~~~ 95 (97)
T 2e5j_A 84 DTLRVALARQQR 95 (97)
T ss_dssp SCCEEEECCCCC
T ss_pred cEEEEEEcCCCC
Confidence 999999998875
No 25
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.88 E-value=6e-22 Score=130.23 Aligned_cols=82 Identities=22% Similarity=0.325 Sum_probs=75.7
Q ss_pred CCCCCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEc-----CCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCe
Q 043011 16 EDERSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAA-----DDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANR 90 (133)
Q Consensus 16 ~~~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~-----~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr 90 (133)
...++++|||+||+++ +++++|+++|++||+|.+|.+. +.++|||||+|.+.++|++|++.|||.. +.|+
T Consensus 4 ~~~~~~~l~V~nlp~~--~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~---~~g~ 78 (99)
T 1whw_A 4 GSSGSGRLFVRNLSYT--SSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQV---FQGR 78 (99)
T ss_dssp CCCSCEEEEEECCCTT--CCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEE---SSSC
T ss_pred CCCCCCEEEEeCCCCC--CCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCE---ECCc
Confidence 3467899999999999 9999999999999999999984 3468999999999999999999999999 9999
Q ss_pred eEEEEeeecCCC
Q 043011 91 FLHISYSVLEDS 102 (133)
Q Consensus 91 ~l~V~~a~~~~~ 102 (133)
+|+|+|+.++..
T Consensus 79 ~l~V~~a~~~~~ 90 (99)
T 1whw_A 79 MLHVLPSTIKKE 90 (99)
T ss_dssp EEEEEECCCCST
T ss_pred EEEEEEcCCCcc
Confidence 999999998873
No 26
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.88 E-value=2.9e-22 Score=146.70 Aligned_cols=109 Identities=18% Similarity=0.214 Sum_probs=94.3
Q ss_pred CCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEc-----CCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCeeEE
Q 043011 19 RSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAA-----DDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRFLH 93 (133)
Q Consensus 19 ~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~-----~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~l~ 93 (133)
++++|||+||+++ +|+++|+++|++||+|.+|.+. +.++|||||+|.+.++|++|++.|||.. +.|+.|+
T Consensus 27 ~~~~l~V~nLp~~--~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~---~~g~~l~ 101 (216)
T 2qfj_A 27 IMSRVYVGSIYYE--LGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVM---LGGRNIK 101 (216)
T ss_dssp HHTEEEEECCCTT--CCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCC---CC-CCCE
T ss_pred cCCEEEEECCCCC--CCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCe---eCCeeEE
Confidence 4689999999999 9999999999999999999984 3479999999999999999999999999 9999999
Q ss_pred EEeeecCCCC--------CCCCCcceeEeeecCCCCCchhhhhhhcc
Q 043011 94 ISYSVLEDSP--------ATRHITSSVPVSLVASELNIPGLHSCFMT 132 (133)
Q Consensus 94 V~~a~~~~~~--------~~~~~~~~l~v~nl~~~~~~~~l~~~f~~ 132 (133)
|.++...... .......+|+|+||+..++..+|+++|..
T Consensus 102 v~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~ 148 (216)
T 2qfj_A 102 VGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEA 148 (216)
T ss_dssp EECCSCCGGGHHHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTT
T ss_pred EecCCCccccchhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhc
Confidence 9988765411 11234467999999999999999999974
No 27
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.88 E-value=1.1e-21 Score=127.92 Aligned_cols=80 Identities=19% Similarity=0.291 Sum_probs=74.5
Q ss_pred CCCCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEc-----CCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCee
Q 043011 17 DERSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAA-----DDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRF 91 (133)
Q Consensus 17 ~~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~-----~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~ 91 (133)
..++++|||+||+.+ +++++|+++|++||+|.++.+. ++++|||||+|.+.++|++|++.|||.. +.|++
T Consensus 2 ~~~~~~l~v~nlp~~--~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~---~~g~~ 76 (95)
T 2dnz_A 2 SSGSSGLYVGSLHFN--ITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFE---LAGRP 76 (95)
T ss_dssp CSCCCEEEEESCCTT--CCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCC---SSSSC
T ss_pred CCCCcEEEEeCCCCC--CCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCe---eCCcE
Confidence 357899999999999 9999999999999999999884 3468999999999999999999999999 99999
Q ss_pred EEEEeeecCC
Q 043011 92 LHISYSVLED 101 (133)
Q Consensus 92 l~V~~a~~~~ 101 (133)
|+|+|+.++.
T Consensus 77 l~V~~a~~~~ 86 (95)
T 2dnz_A 77 MRVGHVTERL 86 (95)
T ss_dssp CEEEESSCCC
T ss_pred EEEEEccccc
Confidence 9999998886
No 28
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.88 E-value=6.6e-22 Score=131.04 Aligned_cols=81 Identities=21% Similarity=0.270 Sum_probs=75.1
Q ss_pred CCCCCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEc-----CCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCe
Q 043011 16 EDERSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAA-----DDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANR 90 (133)
Q Consensus 16 ~~~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~-----~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr 90 (133)
...+.++|||+||+++ +++++|+++|++||+|.+|.+. +.++|||||+|.+.++|++|++.|||.. +.|+
T Consensus 9 ~~~~~~~l~V~nLp~~--~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~---~~g~ 83 (103)
T 2dnm_A 9 DVDGMITLKVDNLTYR--TSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAE---LDGR 83 (103)
T ss_dssp CCSCCCEEEEESCCTT--CCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCC---BTTB
T ss_pred CCCCCeEEEEeCCCCC--CCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCE---ECCc
Confidence 3456899999999999 9999999999999999999985 3468999999999999999999999999 9999
Q ss_pred eEEEEeeecCC
Q 043011 91 FLHISYSVLED 101 (133)
Q Consensus 91 ~l~V~~a~~~~ 101 (133)
.|+|+|+.++.
T Consensus 84 ~l~V~~a~~~~ 94 (103)
T 2dnm_A 84 ELRVQVARYGR 94 (103)
T ss_dssp CCEEEECSSCC
T ss_pred EEEEEECCcCC
Confidence 99999998876
No 29
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.88 E-value=8.9e-22 Score=131.71 Aligned_cols=83 Identities=22% Similarity=0.358 Sum_probs=76.3
Q ss_pred CCCCCCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEc-----CCCCCeEEEEECCHHHHHHHHHHhc------CCC
Q 043011 15 GEDERSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAA-----DDSGARVIVSYFDEGSAQAAFNSLH------SRP 83 (133)
Q Consensus 15 ~~~~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~-----~~~kg~afV~f~~~~~A~~A~~~l~------g~~ 83 (133)
....++++|||+||+++ +++++|+++|++||+|.+|.+. +.++|||||+|.+.++|++|++.|| |..
T Consensus 10 ~~~~~~~~l~V~nLp~~--~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~ 87 (111)
T 1x4h_A 10 SDVTEGKTVFIRNLSFD--SEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLK 87 (111)
T ss_dssp CCCCCCCCEEEESCCTT--CCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEE
T ss_pred CcCCCCCEEEEECCCCC--CCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcE
Confidence 34567899999999999 9999999999999999999985 3478999999999999999999999 999
Q ss_pred CCCCCCeeEEEEeeecCCC
Q 043011 84 CPDLANRFLHISYSVLEDS 102 (133)
Q Consensus 84 ~~~l~gr~l~V~~a~~~~~ 102 (133)
+.|+.|+|+|+.++..
T Consensus 88 ---~~g~~l~v~~a~~~~~ 103 (111)
T 1x4h_A 88 ---LDGRQLKVDLAVTRDE 103 (111)
T ss_dssp ---SSSCEEEEECCCCCCC
T ss_pred ---EcCEEEEEEECCCCcc
Confidence 9999999999998873
No 30
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.88 E-value=8.4e-22 Score=130.54 Aligned_cols=82 Identities=20% Similarity=0.355 Sum_probs=75.5
Q ss_pred CCCCCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEcC---CCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCeeE
Q 043011 16 EDERSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAAD---DSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRFL 92 (133)
Q Consensus 16 ~~~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~~---~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~l 92 (133)
...+.++|||+||+++ +++++|+++|++||+|.+|.+.. .++|||||+|.+.++|++|++.|||.. +.|+.|
T Consensus 11 ~~~~~~~l~V~nlp~~--~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~---~~g~~l 85 (103)
T 2cqi_A 11 DDGQPRTLYVGNLSRD--VTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRK---ILGKEV 85 (103)
T ss_dssp CSCCCCEEEEESCCTT--CCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEE---ETTEEE
T ss_pred CCCCCCEEEEeCCCcc--CCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCC---cCCCeE
Confidence 4567899999999999 99999999999999999999853 368999999999999999999999999 999999
Q ss_pred EEEeeecCCC
Q 043011 93 HISYSVLEDS 102 (133)
Q Consensus 93 ~V~~a~~~~~ 102 (133)
+|+|+.++..
T Consensus 86 ~V~~a~~~~~ 95 (103)
T 2cqi_A 86 KVNWATTPSS 95 (103)
T ss_dssp EEEECCCTTC
T ss_pred EEEECCCCcc
Confidence 9999998764
No 31
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.88 E-value=5.3e-22 Score=134.03 Aligned_cols=82 Identities=23% Similarity=0.251 Sum_probs=75.1
Q ss_pred CCCCCCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEc-----CCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCC
Q 043011 15 GEDERSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAA-----DDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLAN 89 (133)
Q Consensus 15 ~~~~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~-----~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~g 89 (133)
....+.++|||+||+++ +++++|+++|++||+|.+|.+. +.++|||||+|.+.++|++|++.|||.. +.|
T Consensus 20 ~~~~~~~~l~V~nLp~~--~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~---~~g 94 (115)
T 2cpz_A 20 KEGPEGANLFIYHLPQE--FGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQ---IGM 94 (115)
T ss_dssp CCCSTTCCEEEESCCSS--CCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCE---ETT
T ss_pred cCCCCCcEEEEeCCCCC--CCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCE---ECC
Confidence 34567899999999999 9999999999999999999874 3457999999999999999999999999 999
Q ss_pred eeEEEEeeecCC
Q 043011 90 RFLHISYSVLED 101 (133)
Q Consensus 90 r~l~V~~a~~~~ 101 (133)
+.|+|+|+.++.
T Consensus 95 ~~l~V~~a~~~~ 106 (115)
T 2cpz_A 95 KRLKVQLKRSKN 106 (115)
T ss_dssp EECEEECCCCSC
T ss_pred EEEEEEEcCCCC
Confidence 999999998886
No 32
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.88 E-value=1.7e-21 Score=130.45 Aligned_cols=81 Identities=16% Similarity=0.256 Sum_probs=75.0
Q ss_pred CCCCCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEcC--CCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCeeEE
Q 043011 16 EDERSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAAD--DSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRFLH 93 (133)
Q Consensus 16 ~~~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~~--~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~l~ 93 (133)
...+.++|||+||+++ +|+++|+++|++||+|.+|.+.. .++|||||+|.+.++|++|++.|||.. +.|+.|+
T Consensus 18 ~~~~~~~l~V~nLp~~--~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~---~~g~~l~ 92 (109)
T 1x4a_A 18 AGNNDCRIYVGNLPPD--IRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYD---YDGYRLR 92 (109)
T ss_dssp CCCCSSEEEEESCCTT--CCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCE---ETTEECE
T ss_pred CCCCCCEEEEeCCCCC--CCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCE---ECCeEEE
Confidence 4567899999999999 99999999999999999999843 468999999999999999999999999 9999999
Q ss_pred EEeeecCC
Q 043011 94 ISYSVLED 101 (133)
Q Consensus 94 V~~a~~~~ 101 (133)
|+|+.++.
T Consensus 93 V~~a~~~~ 100 (109)
T 1x4a_A 93 VEFPRSGR 100 (109)
T ss_dssp EECCCCCC
T ss_pred EEEcccCC
Confidence 99998876
No 33
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.87 E-value=2.4e-22 Score=131.69 Aligned_cols=75 Identities=15% Similarity=0.094 Sum_probs=71.2
Q ss_pred CCCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEcCCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCeeEEEEee
Q 043011 18 ERSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAADDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRFLHISYS 97 (133)
Q Consensus 18 ~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~l~V~~a 97 (133)
..+..|||+||++. +|+++|+++|++||+|.++++ ..+||||||+|.+.++|++|++.|||.. +.||.|+|++|
T Consensus 5 ~~~~wL~VgNL~~~--~te~~L~~lF~q~G~V~~~~l-~~~kGfaFVey~~~~eA~~Ai~~Ln~~~---l~gr~I~V~~A 78 (89)
T 2wbr_A 5 WGSSWLLLKNLTAQ--IDGPTLRTLCMQHGPLVSFHP-YLNQGIALCKYTTREEANKAQMALNNCV---LANTTIFAESP 78 (89)
T ss_dssp CCCCEEEEECCCTT--CCCHHHHHHHHHHSCEEEEEE-ETTTTEEEEEESSHHHHHHHHHHHTTEE---ETTEEEEEECC
T ss_pred CccceEEEeCCCcc--CCHHHHHHHHHhhCCEEEEEE-cCCCcEEEEEECCHHHHHHHHHHhcCCE---ECCcEEEEEEC
Confidence 45889999999999 999999999999999999998 4589999999999999999999999999 99999999998
Q ss_pred e
Q 043011 98 V 98 (133)
Q Consensus 98 ~ 98 (133)
.
T Consensus 79 ~ 79 (89)
T 2wbr_A 79 S 79 (89)
T ss_dssp C
T ss_pred C
Confidence 4
No 34
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.87 E-value=8.7e-22 Score=127.66 Aligned_cols=78 Identities=21% Similarity=0.217 Sum_probs=73.9
Q ss_pred CCCCCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEcCCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCeeEEEE
Q 043011 16 EDERSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAADDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRFLHIS 95 (133)
Q Consensus 16 ~~~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~l~V~ 95 (133)
...+.++|||+||+++ +++++|+++|++||+|.++.+. +|||||+|.+.++|++|++.|||.. +.|+.|+|+
T Consensus 4 ~~~~~~~l~V~nlp~~--~t~~~l~~~F~~~G~i~~v~~~---~g~afV~f~~~~~A~~A~~~l~g~~---~~g~~l~v~ 75 (90)
T 2dnq_A 4 GSSGMVKLFIGNLPRE--ATEQEIRSLFEQYGKVLECDII---KNYGFVHIEDKTAAEDAIRNLHHYK---LHGVNINVE 75 (90)
T ss_dssp CSSCCEEEEEESCCSS--CCHHHHHHHHHTSSCEEEEEEE---TTEEEEEESSHHHHHHHHHHHTTCB---CSSCBCEEE
T ss_pred CCCCCeEEEEeCCCCC--CCHHHHHHHHHhCCCEEEEEEE---CCEEEEEECCHHHHHHHHHHhcCCc---cCCcEEEEE
Confidence 3567899999999999 9999999999999999999994 8999999999999999999999999 999999999
Q ss_pred eeecCC
Q 043011 96 YSVLED 101 (133)
Q Consensus 96 ~a~~~~ 101 (133)
|+.++.
T Consensus 76 ~a~~~~ 81 (90)
T 2dnq_A 76 ASKNKS 81 (90)
T ss_dssp CSSCCC
T ss_pred ECCCCC
Confidence 998886
No 35
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.87 E-value=2.2e-21 Score=129.06 Aligned_cols=82 Identities=24% Similarity=0.371 Sum_probs=75.7
Q ss_pred CCCCCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEcCC------CCCeEEEEECCHHHHHHHHHHh-cCCCCCCCC
Q 043011 16 EDERSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAADD------SGARVIVSYFDEGSAQAAFNSL-HSRPCPDLA 88 (133)
Q Consensus 16 ~~~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~~~------~kg~afV~f~~~~~A~~A~~~l-~g~~~~~l~ 88 (133)
...+.++|||+||+++ +++++|+++|++||+|.+|.+..+ ++|||||+|.+.++|++|++.| ||.. +.
T Consensus 11 ~~~~~~~l~V~nlp~~--~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~---~~ 85 (107)
T 2cph_A 11 KKQTTSKILVRNIPFQ--ANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTH---LY 85 (107)
T ss_dssp CSSCCCCEEEESCCTT--CCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCB---SS
T ss_pred cCCCCCEEEEeCCCCc--CCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCe---EC
Confidence 4567899999999999 999999999999999999998543 5899999999999999999999 9999 99
Q ss_pred CeeEEEEeeecCCC
Q 043011 89 NRFLHISYSVLEDS 102 (133)
Q Consensus 89 gr~l~V~~a~~~~~ 102 (133)
|+.|+|+|+.++.+
T Consensus 86 g~~l~v~~a~~~~~ 99 (107)
T 2cph_A 86 GRRLVLEWADSEVT 99 (107)
T ss_dssp SCBCEEEECCCCCC
T ss_pred CCEEEEEeCCCCCC
Confidence 99999999998873
No 36
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.87 E-value=2.5e-22 Score=128.88 Aligned_cols=78 Identities=21% Similarity=0.377 Sum_probs=70.1
Q ss_pred CCCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEc-----CCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCeeE
Q 043011 18 ERSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAA-----DDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRFL 92 (133)
Q Consensus 18 ~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~-----~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~l 92 (133)
.+.++|||+||+.+ +++++|+++|++||+|.++.+. +.++|||||+|.+.++|++|++.|||.. +.|+.|
T Consensus 4 ~~~~~l~v~nlp~~--~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~---~~g~~l 78 (87)
T 3bs9_A 4 GSHFHVFVGDLSPE--ITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQW---LGGRQI 78 (87)
T ss_dssp --CEEEEEESCCTT--CCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCE---ETTEEC
T ss_pred CCceEEEEeCCCCC--CCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCE---ECCeEE
Confidence 56889999999999 9999999999999999999884 2358999999999999999999999999 999999
Q ss_pred EEEeeecC
Q 043011 93 HISYSVLE 100 (133)
Q Consensus 93 ~V~~a~~~ 100 (133)
+|+|+.++
T Consensus 79 ~v~~a~~k 86 (87)
T 3bs9_A 79 RTNWATRK 86 (87)
T ss_dssp EEEEEC--
T ss_pred EEEecCCC
Confidence 99999876
No 37
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.87 E-value=8.7e-23 Score=133.54 Aligned_cols=77 Identities=14% Similarity=0.141 Sum_probs=70.5
Q ss_pred CCeEEEeccCCCCCCCHHHHHHHhhcCC-CeeEEEEc-----CCCCCeEEEEECCHHHHHHHHHHh-cCCCCCCCCCeeE
Q 043011 20 SPNLFVANCGPAVGVSYEAIGSVFSAFG-DVKGIYAA-----DDSGARVIVSYFDEGSAQAAFNSL-HSRPCPDLANRFL 92 (133)
Q Consensus 20 ~~~L~V~Nl~~~~~vte~~L~~~F~~fG-~V~~v~~~-----~~~kg~afV~f~~~~~A~~A~~~l-~g~~~~~l~gr~l 92 (133)
+++|||+|||++ +|+++|+++|++|| +|.+|++. +.+||||||+|.+.++|++|++.+ |+.. ++||+|
T Consensus 1 S~~i~v~nLp~~--~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~---~~gr~i 75 (91)
T 2lxi_A 1 SNIVMLRMLPQA--ATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLN---ILGQKV 75 (91)
T ss_dssp CCEEEEETCCSS--CCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEE---ETTEEE
T ss_pred CCEEEEeCCCCC--CCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeE---ECCEEE
Confidence 579999999999 99999999999999 89999874 457999999999999999999988 5667 899999
Q ss_pred EEEeeecCC
Q 043011 93 HISYSVLED 101 (133)
Q Consensus 93 ~V~~a~~~~ 101 (133)
+|+||.+++
T Consensus 76 ~V~~a~~~~ 84 (91)
T 2lxi_A 76 SMHYSDPKP 84 (91)
T ss_dssp EEECCCSCC
T ss_pred EEEEcCCCC
Confidence 999998876
No 38
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=1.9e-21 Score=128.80 Aligned_cols=81 Identities=16% Similarity=0.192 Sum_probs=75.3
Q ss_pred CCCCCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEcC---CCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCeeE
Q 043011 16 EDERSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAAD---DSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRFL 92 (133)
Q Consensus 16 ~~~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~~---~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~l 92 (133)
...+.++|||+||+++ +++++|+++|++||+|.+|.+.. .++|||||+|.+.++|++|++.|||.. +.|+.|
T Consensus 11 ~~~~~~~l~V~nlp~~--~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~---~~g~~l 85 (103)
T 2cq3_A 11 SKSTPKRLHVSNIPFR--FRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTV---VEGRKI 85 (103)
T ss_dssp CSCCCCEEEEESCCTT--CCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCE---ETTEEC
T ss_pred CCCCCCEEEEeCCCCC--CCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCE---ECCEEE
Confidence 4567899999999999 99999999999999999999853 358999999999999999999999999 999999
Q ss_pred EEEeeecCC
Q 043011 93 HISYSVLED 101 (133)
Q Consensus 93 ~V~~a~~~~ 101 (133)
+|+|+.++.
T Consensus 86 ~v~~a~~~~ 94 (103)
T 2cq3_A 86 EVNNATARV 94 (103)
T ss_dssp EEEECCSSC
T ss_pred EEEEcccCC
Confidence 999999887
No 39
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.87 E-value=5.3e-22 Score=130.11 Aligned_cols=78 Identities=23% Similarity=0.272 Sum_probs=73.4
Q ss_pred CCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEc-----CCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCeeEE
Q 043011 19 RSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAA-----DDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRFLH 93 (133)
Q Consensus 19 ~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~-----~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~l~ 93 (133)
|+++|||+||+.+ +++++|+++|++||+|.++.+. +.++|||||+|.+.++|++|++.|||.. +.|+.|+
T Consensus 1 P~~~l~V~nLp~~--~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~---~~g~~l~ 75 (96)
T 2x1f_A 1 PSRVVYLGSIPYD--QTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQ---LGSRFLK 75 (96)
T ss_dssp CCSEEEEESCCTT--CCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCE---ETTEECE
T ss_pred CCcEEEEECCCCC--CCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCe---ECCeEEE
Confidence 6799999999999 9999999999999999999985 3458999999999999999999999999 9999999
Q ss_pred EEeeecCC
Q 043011 94 ISYSVLED 101 (133)
Q Consensus 94 V~~a~~~~ 101 (133)
|+|+.++.
T Consensus 76 V~~a~~~~ 83 (96)
T 2x1f_A 76 CGYSSNSD 83 (96)
T ss_dssp EEECSCSS
T ss_pred EEEcCCCC
Confidence 99998876
No 40
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=1.5e-21 Score=129.51 Aligned_cols=81 Identities=15% Similarity=0.191 Sum_probs=75.1
Q ss_pred CCCCCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEc-----CCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCe
Q 043011 16 EDERSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAA-----DDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANR 90 (133)
Q Consensus 16 ~~~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~-----~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr 90 (133)
...+.++|||+||+++ +++++|+++|++||+|.+|.+. +.++|||||+|.+.++|++|++.|||.. +.|+
T Consensus 11 ~~~~~~~l~V~nlp~~--~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~---~~g~ 85 (105)
T 1x5u_A 11 ERNQDATVYVGGLDEK--VSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIK---LYGK 85 (105)
T ss_dssp CCCTTTEEEEECCCTT--CCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCB---CSSC
T ss_pred cCCCCCEEEEeCCCCC--CCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCe---ECCe
Confidence 4567899999999999 9999999999999999999984 3468999999999999999999999999 9999
Q ss_pred eEEEEeeecCC
Q 043011 91 FLHISYSVLED 101 (133)
Q Consensus 91 ~l~V~~a~~~~ 101 (133)
.|+|+|+.++.
T Consensus 86 ~l~v~~a~~~~ 96 (105)
T 1x5u_A 86 PIRVNKASAHN 96 (105)
T ss_dssp BCEEEETTTTS
T ss_pred EEEEEECCCCC
Confidence 99999998876
No 41
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.87 E-value=2.4e-21 Score=127.48 Aligned_cols=80 Identities=18% Similarity=0.273 Sum_probs=74.3
Q ss_pred CCCCCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEc-----CCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCe
Q 043011 16 EDERSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAA-----DDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANR 90 (133)
Q Consensus 16 ~~~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~-----~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr 90 (133)
...+.++|||+||+.+ +++++|+++|++||+|.+|.+. +.++|||||+|.+.++|++|++ |||.. +.|+
T Consensus 6 ~~~~~~~l~V~nlp~~--~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~---~~g~ 79 (99)
T 2dgs_A 6 SGSKSNKIFVGGIPHN--CGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHD---IMGK 79 (99)
T ss_dssp CCSSCCEEEEESCCSS--CCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCB---SSSC
T ss_pred CCCCCCEEEEeCCCCC--CCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCE---ECCe
Confidence 4567899999999999 9999999999999999999985 3468999999999999999998 99999 9999
Q ss_pred eEEEEeeecCC
Q 043011 91 FLHISYSVLED 101 (133)
Q Consensus 91 ~l~V~~a~~~~ 101 (133)
.|+|+|+.++.
T Consensus 80 ~l~V~~a~~~~ 90 (99)
T 2dgs_A 80 KVEVKRAEPRD 90 (99)
T ss_dssp BCEEEECCCCC
T ss_pred EEEEEECCCCc
Confidence 99999999886
No 42
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.87 E-value=9.2e-22 Score=129.69 Aligned_cols=81 Identities=16% Similarity=0.228 Sum_probs=74.6
Q ss_pred CCCCCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEc----CCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCee
Q 043011 16 EDERSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAA----DDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRF 91 (133)
Q Consensus 16 ~~~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~----~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~ 91 (133)
...+.++|||+||+++ +++++|+++|++||+|.++.+. ++++|||||+|.+.++|++|++.|||.. +.|+.
T Consensus 13 ~~~~~~~l~v~nlp~~--~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~---~~g~~ 87 (100)
T 2do4_A 13 TSLEKHKLFISGLPFS--CTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMT---IKENI 87 (100)
T ss_dssp SCCCCSCEEEESCCTT--CCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEE---SSSCE
T ss_pred cCCCCCEEEEeCCCCC--CCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCE---ECCEE
Confidence 3467899999999999 9999999999999999999884 3457999999999999999999999999 99999
Q ss_pred EEEEeeecCC
Q 043011 92 LHISYSVLED 101 (133)
Q Consensus 92 l~V~~a~~~~ 101 (133)
|+|+|+.++.
T Consensus 88 l~v~~a~~~~ 97 (100)
T 2do4_A 88 IKVAISNSGP 97 (100)
T ss_dssp EEEEECCCCS
T ss_pred EEEEECCCCC
Confidence 9999998875
No 43
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=4.2e-22 Score=132.46 Aligned_cols=82 Identities=21% Similarity=0.294 Sum_probs=74.8
Q ss_pred CCCCCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEc-----CCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCe
Q 043011 16 EDERSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAA-----DDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANR 90 (133)
Q Consensus 16 ~~~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~-----~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr 90 (133)
...++++|||+||+.+ +++++|+++|++||+|.+|.+. +.++|||||+|.+.++|++|++.|||.. +.|+
T Consensus 19 ~~~~~~~l~V~nlp~~--~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~---~~g~ 93 (106)
T 1p27_B 19 RSVEGWILFVTGVHEE--ATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQD---LMGQ 93 (106)
T ss_dssp CBTTBEEEEEECCCTT--CCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCB---SSSS
T ss_pred CCCCCCEEEEeCCCCC--CCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCE---ECCc
Confidence 3456789999999999 9999999999999999999884 3458999999999999999999999999 9999
Q ss_pred eEEEEeeecCCC
Q 043011 91 FLHISYSVLEDS 102 (133)
Q Consensus 91 ~l~V~~a~~~~~ 102 (133)
.|+|+|+.++.+
T Consensus 94 ~l~V~~a~~~~~ 105 (106)
T 1p27_B 94 PISVDWCFVRGP 105 (106)
T ss_dssp BCEEEESEESSC
T ss_pred EEEEEeecCCCC
Confidence 999999998763
No 44
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.87 E-value=1.5e-21 Score=129.36 Aligned_cols=82 Identities=20% Similarity=0.272 Sum_probs=75.7
Q ss_pred CCCCCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEc---CCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCeeE
Q 043011 16 EDERSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAA---DDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRFL 92 (133)
Q Consensus 16 ~~~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~---~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~l 92 (133)
...+.++|||+||+++ +|+++|+++|++||+|.+|.+. +.++|||||+|.+.++|++|++.|||.. +.|+.|
T Consensus 11 ~~~~~~~l~V~nlp~~--~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~---~~g~~l 85 (103)
T 2d9p_A 11 TRYQVVNLYVKNLDDG--IDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRI---VATKPL 85 (103)
T ss_dssp CCSSCCCEEEECCCTT--CCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCB---SSSSBC
T ss_pred CCCCCCEEEEeCCCCC--CCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCE---eCCcEE
Confidence 3457899999999999 9999999999999999999885 3568999999999999999999999999 999999
Q ss_pred EEEeeecCCC
Q 043011 93 HISYSVLEDS 102 (133)
Q Consensus 93 ~V~~a~~~~~ 102 (133)
+|+|+.++..
T Consensus 86 ~V~~a~~~~~ 95 (103)
T 2d9p_A 86 YVALAQRKEE 95 (103)
T ss_dssp EEEECSSCCC
T ss_pred EEEEeccccc
Confidence 9999998873
No 45
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.87 E-value=6.4e-22 Score=143.09 Aligned_cols=108 Identities=13% Similarity=0.125 Sum_probs=93.0
Q ss_pred CCCCeEEEeccCCCCCCCHHHHHHHhhcC----C-------CeeEEEEcCCCCCeEEEEECCHHHHHHHHHHhcCCCCCC
Q 043011 18 ERSPNLFVANCGPAVGVSYEAIGSVFSAF----G-------DVKGIYAADDSGARVIVSYFDEGSAQAAFNSLHSRPCPD 86 (133)
Q Consensus 18 ~~~~~L~V~Nl~~~~~vte~~L~~~F~~f----G-------~V~~v~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~ 86 (133)
..+++|||+|||++ +|+++|+++|++| | .|.++.+ .+++|||||+|.+.++|++|+ .|||..
T Consensus 2 ~~~~~l~V~nLp~~--~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~-~~~~g~afV~F~~~~~A~~Al-~l~g~~--- 74 (198)
T 2yh0_A 2 AMARRLYVGNIPFG--ITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI-NQDKNFAFLEFRSVDETTQAM-AFDGII--- 74 (198)
T ss_dssp --CCEEEEESCCTT--CCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE-ETTTTEEEEEESCSHHHHHHG-GGTTEE---
T ss_pred CceeEEEEcCCCCC--CCHHHHHHHHHHHHhhcccccCCCCceEEeEe-cCCCCEEEEEeCCHHHHHHHH-HhcCCE---
Confidence 35799999999999 9999999999999 5 6777777 678999999999999999999 899999
Q ss_pred CCCeeEEEEeeecCCCCC-----------------CCCCcceeEeeecCCCCCchhhhhhhcc
Q 043011 87 LANRFLHISYSVLEDSPA-----------------TRHITSSVPVSLVASELNIPGLHSCFMT 132 (133)
Q Consensus 87 l~gr~l~V~~a~~~~~~~-----------------~~~~~~~l~v~nl~~~~~~~~l~~~f~~ 132 (133)
+.|+.|+|.++.+..+.. ......+|+|+|||..++..+|+++|..
T Consensus 75 ~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~ 137 (198)
T 2yh0_A 75 FQGQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTS 137 (198)
T ss_dssp ETTEEEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHT
T ss_pred EcCceEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHH
Confidence 999999999987763111 1234567999999999999999999964
No 46
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.87 E-value=9.2e-23 Score=143.95 Aligned_cols=104 Identities=13% Similarity=0.204 Sum_probs=91.7
Q ss_pred CCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEc-----CCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCeeEE
Q 043011 19 RSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAA-----DDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRFLH 93 (133)
Q Consensus 19 ~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~-----~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~l~ 93 (133)
++++|||+|||++ +|+++|+++|++||+|.+|.+. +.++|||||+|.+.++|++|+.. +.. +.|+.|.
T Consensus 2 ~~~~l~v~nLp~~--~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~---~~g~~i~ 74 (167)
T 2cjk_A 2 ESCKMFIGGLNWD--TTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHI---LDGKVID 74 (167)
T ss_dssp GGGEEEECSCCTT--CCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCE---ETTEECC
T ss_pred CCcEEEEeCCCCC--CCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccc---cCCeEcc
Confidence 5789999999999 9999999999999999999974 34689999999999999999995 567 8999999
Q ss_pred EEeeecCCCCCCCCCcceeEeeecCCCCCchhhhhhhcc
Q 043011 94 ISYSVLEDSPATRHITSSVPVSLVASELNIPGLHSCFMT 132 (133)
Q Consensus 94 V~~a~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~ 132 (133)
|.++.++. ......+|+|+|||.+++..+|+++|..
T Consensus 75 v~~~~~~~---~~~~~~~l~V~nlp~~~t~~~l~~~F~~ 110 (167)
T 2cjk_A 75 PKRAIPRD---EQDKTGKIFVGGIGPDVRPKEFEEFFSQ 110 (167)
T ss_dssp CEECCCHH---HHHHCEEEEEEEECTTCCHHHHHHHHHT
T ss_pred cccccchh---hccCCCeEEECCCCCCCCHHHHHHHHHh
Confidence 99987664 2334567999999999999999999964
No 47
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=1.7e-21 Score=128.73 Aligned_cols=81 Identities=15% Similarity=0.257 Sum_probs=75.2
Q ss_pred CCCCCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEcC-----CCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCe
Q 043011 16 EDERSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAAD-----DSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANR 90 (133)
Q Consensus 16 ~~~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~~-----~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr 90 (133)
...+.++|||+||+++ +++++|+++|++||+|.+|.+.. .++|||||+|.+.++|++|++.|||.. +.|+
T Consensus 8 ~~~~~~~l~v~nLp~~--~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~---~~g~ 82 (102)
T 1x5s_A 8 MASDEGKLFVGGLSFD--TNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKS---VDGR 82 (102)
T ss_dssp CCCCCSEEEEESCCTT--CCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCC---TTSC
T ss_pred CCCCCCEEEEECCCCC--CCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCE---ECCe
Confidence 3457899999999999 99999999999999999999853 368999999999999999999999999 9999
Q ss_pred eEEEEeeecCC
Q 043011 91 FLHISYSVLED 101 (133)
Q Consensus 91 ~l~V~~a~~~~ 101 (133)
.|+|+|+.++.
T Consensus 83 ~l~v~~a~~~~ 93 (102)
T 1x5s_A 83 QIRVDQAGKSS 93 (102)
T ss_dssp CCEEEEEECCC
T ss_pred EEEEEECCCCC
Confidence 99999999887
No 48
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.87 E-value=9.9e-22 Score=132.04 Aligned_cols=82 Identities=16% Similarity=0.164 Sum_probs=72.8
Q ss_pred CCCCCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEcCCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCeeEEEE
Q 043011 16 EDERSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAADDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRFLHIS 95 (133)
Q Consensus 16 ~~~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~l~V~ 95 (133)
...|+++|||+||+++ +++++|+++|++||+|.+|.+. +.||||||+|.+.++|++|++.|++.. ..+.|++|+|+
T Consensus 11 ~~~p~~~l~V~nLp~~--~te~~L~~~F~~fG~V~~v~i~-~~kg~aFVef~~~~~A~~Ai~~l~~~~-~~i~Gr~l~V~ 86 (104)
T 1wex_A 11 KVSVSPVVHVRGLCES--VVEADLVEALEKFGTICYVMMM-PFKRQALVEFENIDSAKECVTFAADVP-VYIAGQQAFFN 86 (104)
T ss_dssp CCCCCSEEEEESCCSS--CCHHHHHHHHTTTSCEEEEEEE-TTTTEEEEEESSHHHHHHHHHHHHHSC-CBSSSSBCEEE
T ss_pred cCCCCCEEEEeCCCCC--CCHHHHHHHHHhCCCEEEEEEE-CCCCEEEEEECCHHHHHHHHHHhccCC-ceECCEEEEEE
Confidence 3467899999999999 9999999999999999999984 469999999999999999999997542 12899999999
Q ss_pred eeecCC
Q 043011 96 YSVLED 101 (133)
Q Consensus 96 ~a~~~~ 101 (133)
|+.++.
T Consensus 87 ~a~~~~ 92 (104)
T 1wex_A 87 YSTSKR 92 (104)
T ss_dssp ECSSSS
T ss_pred EccCcc
Confidence 998876
No 49
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.87 E-value=5e-22 Score=126.97 Aligned_cols=78 Identities=18% Similarity=0.288 Sum_probs=72.1
Q ss_pred CCCCCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEc-----CCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCe
Q 043011 16 EDERSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAA-----DDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANR 90 (133)
Q Consensus 16 ~~~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~-----~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr 90 (133)
...+.++|||+||+++ +++++|+++|++||+|.++.+. +.++|||||+|.+.++|++|++.|||.. +.|+
T Consensus 3 ~~~~~~~l~V~nl~~~--~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~---~~g~ 77 (85)
T 3mdf_A 3 MATTKRVLYVGGLAEE--VDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESE---LFGR 77 (85)
T ss_dssp CCCCSSEEEEECCCTT--CCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCE---ETTE
T ss_pred CCCCCCEEEEECCCCC--CCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCE---ECCc
Confidence 3467899999999999 9999999999999999999874 2368999999999999999999999999 9999
Q ss_pred eEEEEeee
Q 043011 91 FLHISYSV 98 (133)
Q Consensus 91 ~l~V~~a~ 98 (133)
.|+|+||+
T Consensus 78 ~l~v~~ak 85 (85)
T 3mdf_A 78 TIRVNLAK 85 (85)
T ss_dssp ECEEEECC
T ss_pred EEEEEEcC
Confidence 99999984
No 50
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.87 E-value=4.5e-22 Score=130.60 Aligned_cols=80 Identities=24% Similarity=0.260 Sum_probs=74.0
Q ss_pred CCCCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEcC--------CCCCeEEEEECCHHHHHHHHHHhcCCCCCCCC
Q 043011 17 DERSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAAD--------DSGARVIVSYFDEGSAQAAFNSLHSRPCPDLA 88 (133)
Q Consensus 17 ~~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~~--------~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~ 88 (133)
..++++|||+||+++ +++++|+++|++||+|.+|.+.. .++|||||+|.+.++|++|++.|||.. +.
T Consensus 2 s~~~~~l~V~nLp~~--~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~---~~ 76 (98)
T 2cpf_A 2 SSGSSGLFIKNLNFS--TTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHT---VD 76 (98)
T ss_dssp CCCCCCEEEESCCTT--CCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCE---ET
T ss_pred CCCCCEEEEeCCCCC--CCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCe---eC
Confidence 357899999999999 99999999999999999998742 457999999999999999999999999 99
Q ss_pred CeeEEEEeeecCC
Q 043011 89 NRFLHISYSVLED 101 (133)
Q Consensus 89 gr~l~V~~a~~~~ 101 (133)
|+.|+|+|+.++.
T Consensus 77 g~~l~V~~a~~~~ 89 (98)
T 2cpf_A 77 GHKLEVRISERAT 89 (98)
T ss_dssp TEECEEECSSCSS
T ss_pred CeEEEEEEccCCC
Confidence 9999999998876
No 51
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=3.4e-21 Score=126.87 Aligned_cols=78 Identities=19% Similarity=0.215 Sum_probs=73.6
Q ss_pred CCCCCCeEEEeccCCCCCCCHHHHHHHhhcC--CCeeEEEEcCCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCeeEE
Q 043011 16 EDERSPNLFVANCGPAVGVSYEAIGSVFSAF--GDVKGIYAADDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRFLH 93 (133)
Q Consensus 16 ~~~~~~~L~V~Nl~~~~~vte~~L~~~F~~f--G~V~~v~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~l~ 93 (133)
...++++|||+||+++ +|+++|+++|++| |.|.++.+ .+|||||+|.+.++|++|+..|||.. +.|+.|+
T Consensus 11 ~~~~~~~l~V~nLp~~--~t~~~l~~~F~~~g~g~v~~~~~---~~g~afV~f~~~~~A~~A~~~l~g~~---~~g~~l~ 82 (99)
T 2cpd_A 11 TMSSVKILYVRNLMLS--TSEEMIEKEFNNIKPGAVERVKK---IRDYAFVHFSNREDAVEAMKALNGKV---LDGSPIE 82 (99)
T ss_dssp CSSCCCEEEEESCCTT--CCHHHHHHHHHTTSTTCEEEEEE---CSSEEEEEESSHHHHHHHHHHHSSEE---ETTEEEE
T ss_pred ccCCcCEEEEeCCCCC--CCHHHHHHHHHhcCCcceEEEEE---eCCeEEEEeCCHHHHHHHHHHhCCCE---eCCcEEE
Confidence 4567899999999999 9999999999999 99999988 58999999999999999999999999 9999999
Q ss_pred EEeeecCC
Q 043011 94 ISYSVLED 101 (133)
Q Consensus 94 V~~a~~~~ 101 (133)
|+|+.++.
T Consensus 83 v~~a~~~~ 90 (99)
T 2cpd_A 83 VTLAKPVD 90 (99)
T ss_dssp EECCCCCC
T ss_pred EEECCCCC
Confidence 99998876
No 52
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=8.1e-22 Score=130.26 Aligned_cols=81 Identities=17% Similarity=0.231 Sum_probs=75.2
Q ss_pred CCCCCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEcC-----CCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCe
Q 043011 16 EDERSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAAD-----DSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANR 90 (133)
Q Consensus 16 ~~~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~~-----~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr 90 (133)
...+.++|||+||+++ +++++|+++|++||+|.+|.+.. .++|||||+|.+.++|++|++.|||.. +.|+
T Consensus 8 ~~~~~~~l~V~nLp~~--~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~---~~g~ 82 (102)
T 2cqb_A 8 MATTKRVLYVGGLAEE--VDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESE---LFGR 82 (102)
T ss_dssp SCCCCSCEEEESCCSS--CCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEE---ETTE
T ss_pred cCCCCCEEEEeCCCCC--CCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCE---ECCc
Confidence 3457899999999999 99999999999999999999843 478999999999999999999999999 9999
Q ss_pred eEEEEeeecCC
Q 043011 91 FLHISYSVLED 101 (133)
Q Consensus 91 ~l~V~~a~~~~ 101 (133)
.|+|+|+.++.
T Consensus 83 ~l~V~~a~~~~ 93 (102)
T 2cqb_A 83 TIRVNLAKPMR 93 (102)
T ss_dssp EEEEEECCCCC
T ss_pred EEEEEeCCCCC
Confidence 99999999887
No 53
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=7.8e-22 Score=128.86 Aligned_cols=81 Identities=23% Similarity=0.398 Sum_probs=74.4
Q ss_pred CCCCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEE-EEcC-----CCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCe
Q 043011 17 DERSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGI-YAAD-----DSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANR 90 (133)
Q Consensus 17 ~~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v-~~~~-----~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr 90 (133)
..++++|||+||+++ +++++|+++|++||+|.++ .+.. .++|||||+|.+.++|++|++.|||.. +.|+
T Consensus 2 ~~~~~~l~V~nLp~~--~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~---~~g~ 76 (96)
T 1x5t_A 2 SSGSSGIFIGNLDPE--IDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQY---LCNR 76 (96)
T ss_dssp CSCCCEEEEECCCTT--CCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCE---ETTE
T ss_pred CCCCCEEEEeCCCCC--CCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCE---ECCE
Confidence 357899999999999 9999999999999999988 7743 368999999999999999999999999 9999
Q ss_pred eEEEEeeecCCC
Q 043011 91 FLHISYSVLEDS 102 (133)
Q Consensus 91 ~l~V~~a~~~~~ 102 (133)
.|+|+|+.++..
T Consensus 77 ~l~v~~a~~~~~ 88 (96)
T 1x5t_A 77 PITVSYAFKKDS 88 (96)
T ss_dssp ECEEEESCCCCC
T ss_pred EEEEEEecccCC
Confidence 999999988873
No 54
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.87 E-value=7.8e-22 Score=130.25 Aligned_cols=79 Identities=14% Similarity=0.188 Sum_probs=73.3
Q ss_pred CCCCCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEcCCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCeeEEEE
Q 043011 16 EDERSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAADDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRFLHIS 95 (133)
Q Consensus 16 ~~~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~l~V~ 95 (133)
....+++|||+||+.+ +++++|+++|++||+|.++.+. +++|||||+|.+.++|++|++.|||.. +.|+.|+|+
T Consensus 23 ~~~~~~~l~V~nlp~~--~~~~~l~~~f~~~G~i~~~~~~-~~~g~afV~f~~~~~A~~Ai~~l~g~~---~~g~~l~V~ 96 (101)
T 2la4_A 23 APPRVTTAYIGNIPHF--ATEADLIPLFQNFGFILDFKHY-PEKGCCFIKYDTHEQAAVCIVALANFP---FQGRNLRTG 96 (101)
T ss_dssp SCSSCCEEEEESCCTT--CCHHHHHHHHHTTSCCSEEEEE-TTTTEEEEECSSHHHHHHHHHHHTTCE---ETTEECCCC
T ss_pred CCCCCCEEEEcCCCcc--cCHHHHHHHHHhCCCEEEEEEe-cCCCEEEEEECCHHHHHHHHHHhCCCe---ECCeEEEEE
Confidence 3445789999999999 9999999999999999999984 789999999999999999999999999 999999999
Q ss_pred eeecC
Q 043011 96 YSVLE 100 (133)
Q Consensus 96 ~a~~~ 100 (133)
|++++
T Consensus 97 ~a~~~ 101 (101)
T 2la4_A 97 WGKER 101 (101)
T ss_dssp BCCCC
T ss_pred eccCC
Confidence 99764
No 55
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.87 E-value=1.1e-21 Score=136.15 Aligned_cols=81 Identities=25% Similarity=0.384 Sum_probs=74.3
Q ss_pred CCCCCCeEEEeccCCCCCCCHHHHH----HHhhcCCCeeEEEEc--CCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCC
Q 043011 16 EDERSPNLFVANCGPAVGVSYEAIG----SVFSAFGDVKGIYAA--DDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLAN 89 (133)
Q Consensus 16 ~~~~~~~L~V~Nl~~~~~vte~~L~----~~F~~fG~V~~v~~~--~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~g 89 (133)
...|+++|||+||++. +++++|+ ++|++||+|.+|.+. ++++|||||+|.+.++|+.|++.|||.. +.|
T Consensus 25 ~~~p~~~LfV~nL~~~--~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~---l~g 99 (127)
T 2a3j_A 25 HTEPSQVVLITNINPE--VPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYP---FQG 99 (127)
T ss_dssp CCSCCSEEEEESCCTT--SCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCC---CTT
T ss_pred CCCCCCEEEEeCCCCC--CCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCE---eCC
Confidence 3567899999999999 9999876 699999999999884 4689999999999999999999999999 999
Q ss_pred eeEEEEeeecCC
Q 043011 90 RFLHISYSVLED 101 (133)
Q Consensus 90 r~l~V~~a~~~~ 101 (133)
++|+|+||.++.
T Consensus 100 r~l~V~~a~~~~ 111 (127)
T 2a3j_A 100 NPLVITFSETPQ 111 (127)
T ss_dssp SCCEEEECCCCC
T ss_pred CEEEEEEccCcc
Confidence 999999998876
No 56
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.87 E-value=1e-21 Score=126.14 Aligned_cols=79 Identities=14% Similarity=0.196 Sum_probs=72.8
Q ss_pred CCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEcC------CCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCeeE
Q 043011 19 RSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAAD------DSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRFL 92 (133)
Q Consensus 19 ~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~~------~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~l 92 (133)
..++|||+||+++ +++++|+++|++||+|.++.+.. +++|||||+|.+.++|++|++.|||.. +.|+.|
T Consensus 3 ~~~~l~V~nlp~~--~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~---~~g~~l 77 (88)
T 4a8x_A 3 KPTKVHIGRLTRN--VTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQ---IDGQEI 77 (88)
T ss_dssp CCCEEEEECCCTT--CCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCE---ETTEEC
T ss_pred CCCEEEEeCCCCC--CCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCe---ECCeEE
Confidence 4689999999999 99999999999999999998742 278999999999999999999999999 999999
Q ss_pred EEEeeecCCC
Q 043011 93 HISYSVLEDS 102 (133)
Q Consensus 93 ~V~~a~~~~~ 102 (133)
+|+++.+..+
T Consensus 78 ~v~~a~~~~~ 87 (88)
T 4a8x_A 78 TATAVLAPWP 87 (88)
T ss_dssp EEEEECCCCC
T ss_pred EEEECCCCCC
Confidence 9999987653
No 57
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.87 E-value=7.5e-22 Score=140.58 Aligned_cols=110 Identities=14% Similarity=0.127 Sum_probs=94.3
Q ss_pred CCCCCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEE----cCCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCee
Q 043011 16 EDERSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYA----ADDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRF 91 (133)
Q Consensus 16 ~~~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~----~~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~ 91 (133)
...+.++|||+|||++ +|+++|+++|++||.+.++.+ .+.++|||||+|.+.++|++|+ .|||.. +.|+.
T Consensus 9 ~~~~~~~l~V~nLp~~--~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~---~~g~~ 82 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPN--KSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKAL-ELTGLK---VFGNE 82 (175)
T ss_dssp SCSSSEEEEEECCCTT--SCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHH-HGGGEE---ETTEE
T ss_pred CCCCCcEEEEeCCCCC--CCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHH-hcCCCE---eCCeE
Confidence 4567899999999999 999999999999997654221 2568999999999999999999 599999 99999
Q ss_pred EEEEeeecCCCCCCCCCcceeEeeecCCCCCchhhhhhhcc
Q 043011 92 LHISYSVLEDSPATRHITSSVPVSLVASELNIPGLHSCFMT 132 (133)
Q Consensus 92 l~V~~a~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~ 132 (133)
|+|.++.++.. .......+|+|+|||..++..+|+++|..
T Consensus 83 l~v~~~~~~~~-~~~~~~~~l~v~nlp~~~t~~~l~~~F~~ 122 (175)
T 1fje_B 83 IKLEKPKGRDS-KKVRAARTLLAKNLSFNITEDELKEVFED 122 (175)
T ss_dssp EEEECCCCSSC-STTGGGGEEEEESCCSSCCHHHHHHHCTT
T ss_pred EEEecCCCccc-cccccCCEEEEeCCCCCCCHHHHHHHHHh
Confidence 99999987762 23334567999999999999999999964
No 58
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=3.2e-21 Score=126.69 Aligned_cols=79 Identities=18% Similarity=0.261 Sum_probs=73.1
Q ss_pred CCCCCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEcCCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCeeEEEE
Q 043011 16 EDERSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAADDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRFLHIS 95 (133)
Q Consensus 16 ~~~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~l~V~ 95 (133)
...+.++|||+|+ + +|+++|+++|++||+|.+|.+ .+++|||||+|.+.++|++|++.|||.. +.|+.|+|+
T Consensus 11 ~~~~~~~l~V~n~--~--~t~~~l~~~F~~~G~i~~v~i-~~~~g~afV~f~~~~~a~~Ai~~l~g~~---~~g~~l~v~ 82 (97)
T 1x5p_A 11 APRKGNTLYVYGE--D--MTPTLLRGAFSPFGNIIDLSM-DPPRNCAFVTYEKMESADQAVAELNGTQ---VESVQLKVN 82 (97)
T ss_dssp CCCCCSEEEEECS--S--CCHHHHHHHHTTTSCEEEEEE-ETTTTEEEEEESSHHHHHHHHHHTTTEE---ETTEEEEEE
T ss_pred CCCCCCEEEEcCC--C--CCHHHHHHHHhhCCCEEEEEe-cCCCCEEEEEECCHHHHHHHHHHhCCCe---ECCeEEEEE
Confidence 3457899999996 6 999999999999999999999 6789999999999999999999999999 999999999
Q ss_pred eeecCCC
Q 043011 96 YSVLEDS 102 (133)
Q Consensus 96 ~a~~~~~ 102 (133)
|+.++..
T Consensus 83 ~a~~~~~ 89 (97)
T 1x5p_A 83 IARKQPM 89 (97)
T ss_dssp CCSSCCC
T ss_pred ECCCCCC
Confidence 9988763
No 59
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=9.4e-22 Score=128.11 Aligned_cols=79 Identities=16% Similarity=0.138 Sum_probs=72.8
Q ss_pred CCCCCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEc-----CCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCe
Q 043011 16 EDERSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAA-----DDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANR 90 (133)
Q Consensus 16 ~~~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~-----~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr 90 (133)
...++++|||+||+++ +++++|+++|++||+|.++.+. +.++|||||+|.+.++|++|++.|||.. +.|+
T Consensus 11 ~~~~~~~l~v~nlp~~--~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~---~~g~ 85 (95)
T 2cqc_A 11 NPDPNCCLGVFGLSLY--TTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGME---LDGR 85 (95)
T ss_dssp SCCGGGCEEEESCCSS--CCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEE---ETTE
T ss_pred CCCCCCEEEEECCCCC--CCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCE---ECCE
Confidence 3467899999999999 9999999999999999999884 3567999999999999999999999999 9999
Q ss_pred eEEEEeeec
Q 043011 91 FLHISYSVL 99 (133)
Q Consensus 91 ~l~V~~a~~ 99 (133)
+|+|+|+++
T Consensus 86 ~l~v~~a~~ 94 (95)
T 2cqc_A 86 RIRVSGPSS 94 (95)
T ss_dssp EEEEECCSC
T ss_pred EEEEEecCC
Confidence 999999864
No 60
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.86 E-value=9.8e-22 Score=125.10 Aligned_cols=77 Identities=25% Similarity=0.311 Sum_probs=71.2
Q ss_pred CCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEc-----CCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCeeEEE
Q 043011 20 SPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAA-----DDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRFLHI 94 (133)
Q Consensus 20 ~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~-----~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~l~V 94 (133)
+.+|||+|||++ +++++|+++|++||+|.++.+. +.++|||||+|.+.++|++|++.|||.. +.|+.|+|
T Consensus 1 t~~l~V~nlp~~--~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~---~~g~~l~v 75 (83)
T 3md1_A 1 TFNLFVGDLNVN--VDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQD---LNGRPLRI 75 (83)
T ss_dssp CEEEEEECCCTT--CCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCE---ETTEECEE
T ss_pred CeEEEEeCCCCC--CCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCe---eCCcEEEE
Confidence 468999999999 9999999999999999999874 3458999999999999999999999999 99999999
Q ss_pred EeeecCC
Q 043011 95 SYSVLED 101 (133)
Q Consensus 95 ~~a~~~~ 101 (133)
+|+.+++
T Consensus 76 ~~a~~~~ 82 (83)
T 3md1_A 76 NWAAKLE 82 (83)
T ss_dssp EECCCCC
T ss_pred EecCcCC
Confidence 9998764
No 61
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=2.2e-21 Score=130.01 Aligned_cols=80 Identities=13% Similarity=0.219 Sum_probs=74.8
Q ss_pred CCCCCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEcCCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCeeEEEE
Q 043011 16 EDERSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAADDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRFLHIS 95 (133)
Q Consensus 16 ~~~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~l~V~ 95 (133)
...+.++|||+||+.+ +++++|+++|++||+|.+|.+.. .+|||||+|.+.++|++|+..|||.. +.|+.|+|+
T Consensus 21 ~~~~~~~l~V~nl~~~--~t~~~l~~~F~~~G~i~~v~i~~-~~g~afV~f~~~~~a~~A~~~l~g~~---~~g~~l~v~ 94 (109)
T 1x4g_A 21 SSPKNCTVYCGGIASG--LTDQLMRQTFSPFGQIMEIRVFP-EKGYSFVRFSTHESAAHAIVSVNGTT---IEGHVVKCY 94 (109)
T ss_dssp SCSSCCEEEEECCSSC--CCHHHHHHHHHHHSCEEEEEEET-TTTEEEEEESSHHHHHHHHHHHTTCE---ETTEECEEE
T ss_pred CCCCCcEEEEeCCCCC--CCHHHHHHHHHhcCCeEEEEEeC-CCCEEEEEECCHHHHHHHHHHcCCCE---ECCcEEEEE
Confidence 4556899999999999 99999999999999999999854 49999999999999999999999999 999999999
Q ss_pred eeecCC
Q 043011 96 YSVLED 101 (133)
Q Consensus 96 ~a~~~~ 101 (133)
|+.++.
T Consensus 95 ~a~~~~ 100 (109)
T 1x4g_A 95 WGKESP 100 (109)
T ss_dssp CCCCCC
T ss_pred ecCCCC
Confidence 998886
No 62
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.86 E-value=2.1e-21 Score=128.18 Aligned_cols=78 Identities=19% Similarity=0.202 Sum_probs=72.8
Q ss_pred CCCCCCeEEEeccCC-CCCCCHHHHHHHhhcCCCeeEEEEcCCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCeeEEE
Q 043011 16 EDERSPNLFVANCGP-AVGVSYEAIGSVFSAFGDVKGIYAADDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRFLHI 94 (133)
Q Consensus 16 ~~~~~~~L~V~Nl~~-~~~vte~~L~~~F~~fG~V~~v~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~l~V 94 (133)
...++++|||+||++ + +++++|+++|++||+|.++.+ .+|||||+|.+.++|++|++.|||.. +.|+.|+|
T Consensus 18 ~~~~~~~l~V~nLp~~~--~t~~~L~~~F~~~G~v~~v~i---~~g~afV~f~~~~~A~~Ai~~l~g~~---~~g~~l~V 89 (97)
T 2xnq_A 18 GSHMKSRLFIGNLPLKN--VSKEDLFRIFSPYGHIMQINI---KNAFGFIQFDNPQSVRDAIEXESQEM---NFGKKLIL 89 (97)
T ss_dssp -CCTTCEEEEESCCSSC--CCHHHHHHHHGGGSCEEEEEE---CSSEEEEEESSHHHHHHHHHHHTTSE---ETTEECEE
T ss_pred CCCCCCEEEEeCCCccc--CCHHHHHHHHHhcCCEEEEEE---eCCEEEEEECCHHHHHHHHHHcCCCE---ECCEEEEE
Confidence 556789999999998 9 999999999999999999999 58999999999999999999999999 99999999
Q ss_pred EeeecCC
Q 043011 95 SYSVLED 101 (133)
Q Consensus 95 ~~a~~~~ 101 (133)
+|++++.
T Consensus 90 ~~a~~~~ 96 (97)
T 2xnq_A 90 EVSSSNA 96 (97)
T ss_dssp EECCCCC
T ss_pred EecCCCC
Confidence 9997753
No 63
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.86 E-value=3.1e-21 Score=125.49 Aligned_cols=78 Identities=18% Similarity=0.243 Sum_probs=73.2
Q ss_pred CCCCCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEcCCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCeeEEEE
Q 043011 16 EDERSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAADDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRFLHIS 95 (133)
Q Consensus 16 ~~~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~l~V~ 95 (133)
...+.++|||+||+++ +++++|+++|++||+|.++.+. ++||||+|.+.++|++|++.|||.. +.|+.|+|+
T Consensus 6 ~~~~~~~l~V~nLp~~--~t~~~l~~~F~~~G~v~~v~~~---~~~afV~f~~~~~a~~A~~~l~g~~---~~g~~l~V~ 77 (92)
T 2dgt_A 6 SGKASTKLHVGNISPT--CTNQELRAKFEEYGPVIECDIV---KDYAFVHMERAEDAVEAIRGLDNTE---FQGKRMHVQ 77 (92)
T ss_dssp CCCSSEEEEEESCCSS--CCHHHHHHHHHTTSCCCEEEEC---SSEEEEEESCHHHHHHHHHHHTTEE---ETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCC--CCHHHHHHHHHhcCCeEEEEEE---CCEEEEEECCHHHHHHHHHHhCCCe---eCCcEEEEE
Confidence 3457899999999999 9999999999999999999993 6799999999999999999999999 999999999
Q ss_pred eeecCC
Q 043011 96 YSVLED 101 (133)
Q Consensus 96 ~a~~~~ 101 (133)
|+.++.
T Consensus 78 ~a~~~~ 83 (92)
T 2dgt_A 78 LSTSRL 83 (92)
T ss_dssp ESSCCC
T ss_pred EccCCC
Confidence 998876
No 64
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.86 E-value=3.1e-21 Score=125.58 Aligned_cols=78 Identities=18% Similarity=0.328 Sum_probs=72.1
Q ss_pred CCCCCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEc-----CCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCe
Q 043011 16 EDERSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAA-----DDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANR 90 (133)
Q Consensus 16 ~~~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~-----~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr 90 (133)
...+.++|||+||+++ +++++|+++|++||+|.++.+. +.++|||||+|.+.++|++|++.|||.. +.|+
T Consensus 12 ~~~~~~~l~V~nlp~~--~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~---~~g~ 86 (94)
T 2e5h_A 12 LAPSKSTVYVSNLPFS--LTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQ---LFGR 86 (94)
T ss_dssp CCCCTTSEEEESCCTT--SCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEE---ETTE
T ss_pred CCCCCCEEEEECCCCC--CCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCe---eCCc
Confidence 4567899999999999 9999999999999999999985 3468999999999999999999999999 9999
Q ss_pred eEEEEeee
Q 043011 91 FLHISYSV 98 (133)
Q Consensus 91 ~l~V~~a~ 98 (133)
+|+|+||+
T Consensus 87 ~l~v~~ak 94 (94)
T 2e5h_A 87 VIKASIAI 94 (94)
T ss_dssp EEEEEECC
T ss_pred EEEEEecC
Confidence 99999984
No 65
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.86 E-value=1.5e-21 Score=135.32 Aligned_cols=82 Identities=16% Similarity=0.195 Sum_probs=75.9
Q ss_pred CCCCCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEc-----CCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCe
Q 043011 16 EDERSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAA-----DDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANR 90 (133)
Q Consensus 16 ~~~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~-----~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr 90 (133)
...++++|||+||+++ +++++|+++|++||+|.+|.+. ++.+|||||+|.+.++|++|++.|||.. +.|+
T Consensus 42 ~~~~~~~l~V~nLp~~--~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~---i~g~ 116 (129)
T 2kxn_B 42 NPDPNCCLGVFGLSLY--TTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGME---LDGR 116 (129)
T ss_dssp CCCCSSCBCEETCTTS--CCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCC---SSSS
T ss_pred CCCCCCEEEEeCCCCC--CCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCE---ECCE
Confidence 4567899999999999 9999999999999999999984 3578999999999999999999999999 9999
Q ss_pred eEEEEeeecCCC
Q 043011 91 FLHISYSVLEDS 102 (133)
Q Consensus 91 ~l~V~~a~~~~~ 102 (133)
+|+|+|+.++.+
T Consensus 117 ~l~V~~a~~~~p 128 (129)
T 2kxn_B 117 RIRVDFSITKRP 128 (129)
T ss_dssp CCEESCCSSSSC
T ss_pred EEEEEEecCCCC
Confidence 999999988753
No 66
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.86 E-value=4.4e-21 Score=127.28 Aligned_cols=81 Identities=22% Similarity=0.283 Sum_probs=74.2
Q ss_pred CCCCCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEcC----CCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCC--
Q 043011 16 EDERSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAAD----DSGARVIVSYFDEGSAQAAFNSLHSRPCPDLAN-- 89 (133)
Q Consensus 16 ~~~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~~----~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~g-- 89 (133)
...++++|||+||+++ +++++|+++|++||+|.+|.+.. .++|||||+|.+.++|++|++.|||.. +.|
T Consensus 11 ~~~~~~~l~v~nLp~~--~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~---~~gg~ 85 (105)
T 2dnh_A 11 RGGRDRKLFVGMLNKQ--QSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQ---TMPGA 85 (105)
T ss_dssp SCCCCCEEEEESCCTT--CCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCC---CCTTC
T ss_pred cCCCCCEEEEeCCCCC--CCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCc---cCCCC
Confidence 4457899999999999 99999999999999999998842 348999999999999999999999999 888
Q ss_pred -eeEEEEeeecCC
Q 043011 90 -RFLHISYSVLED 101 (133)
Q Consensus 90 -r~l~V~~a~~~~ 101 (133)
+.|+|+|+.++.
T Consensus 86 ~~~l~V~~a~~~~ 98 (105)
T 2dnh_A 86 SSSLVVKFADTDK 98 (105)
T ss_dssp SSCCEEEESCSSC
T ss_pred CccEEEEECccCc
Confidence 999999998876
No 67
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.86 E-value=1.4e-21 Score=128.40 Aligned_cols=78 Identities=19% Similarity=0.188 Sum_probs=72.2
Q ss_pred CCCCCCeEEEeccCC-CCCCCHHHHHHHhhcCCCeeEEEEcCCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCeeEEE
Q 043011 16 EDERSPNLFVANCGP-AVGVSYEAIGSVFSAFGDVKGIYAADDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRFLHI 94 (133)
Q Consensus 16 ~~~~~~~L~V~Nl~~-~~~vte~~L~~~F~~fG~V~~v~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~l~V 94 (133)
...++++|||+||++ + +++++|+++|++||+|.++.+ .+|||||+|.+.++|++|++.|||.. +.|+.|+|
T Consensus 6 ~~~~~~~l~V~nlp~~~--~t~~~l~~~F~~~G~v~~v~i---~~g~afV~f~~~~~A~~A~~~l~g~~---~~g~~l~V 77 (96)
T 2kvi_A 6 NIPPKSRLFIGNLPLKN--VSKEDLFRIFSPYGHIMQINI---KNAFGFIQFDNPQSVRDAIECESQEM---NFGKKLIL 77 (96)
T ss_dssp ---CCEEEEEESSTTSC--CCHHHHHHHHTTTCCCCEEEE---ETTEEEEEESCHHHHHHHHHHHTCSS---CBTTTBCE
T ss_pred cCCCCCEEEEeCCCccc--CCHHHHHHHHHhcCCEEEEEE---eCCEEEEEECCHHHHHHHHHHcCCCe---eCCcEEEE
Confidence 346789999999998 9 999999999999999999999 48999999999999999999999999 99999999
Q ss_pred EeeecCC
Q 043011 95 SYSVLED 101 (133)
Q Consensus 95 ~~a~~~~ 101 (133)
+|+.++.
T Consensus 78 ~~a~~~~ 84 (96)
T 2kvi_A 78 EVSSSNA 84 (96)
T ss_dssp EEEECCC
T ss_pred EEcCcCC
Confidence 9998876
No 68
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.86 E-value=3.2e-21 Score=147.25 Aligned_cols=99 Identities=15% Similarity=0.250 Sum_probs=91.9
Q ss_pred CCCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEcCCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCeeEEEEee
Q 043011 18 ERSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAADDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRFLHISYS 97 (133)
Q Consensus 18 ~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~l~V~~a 97 (133)
.++++|||+|||++ +|+++|+++|++|| |.++.+ ++++|||||+|.+.++|++|++.|||.. +.|+.|.|+++
T Consensus 20 ~~~~~l~V~nLp~~--~te~~l~~~F~~~G-i~~~~~-~~~~g~afV~f~~~~~A~~A~~~l~~~~---~~g~~i~v~~~ 92 (284)
T 3smz_A 20 RNRRKILIRGLPGD--VTNQEVHDLLSDYE-LKYCFV-DKYKGTAFVTLLNGEQAEAAINAFHQSR---LRERELSVQLQ 92 (284)
T ss_dssp HCCCEEEEECCCTT--CCHHHHHHHTTTSC-EEEEEE-ETTTTEEEEEESSHHHHHHHHHHHTTCE---ETTEECEEEEC
T ss_pred CCCCEEEEeCCCCC--CCHHHHHHHHHHcC-CEEEEE-ecCCCEEEEEeCCHHHHHHHHHHcCCCe---eCCeEEEEEec
Confidence 36799999999999 99999999999999 999998 7889999999999999999999999999 99999999996
Q ss_pred ecCCCCCCCCCcceeEeeecCCCCCchhhhhhhcc
Q 043011 98 VLEDSPATRHITSSVPVSLVASELNIPGLHSCFMT 132 (133)
Q Consensus 98 ~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~ 132 (133)
.+. .+|+|+|||..++..+|+++|..
T Consensus 93 ~~~---------~~l~v~nlp~~~t~~~l~~~f~~ 118 (284)
T 3smz_A 93 PTD---------ALLCVANLPPSLTQQQFEELVRP 118 (284)
T ss_dssp CCS---------CEEEEESCCTTCCHHHHHHHHGG
T ss_pred CCC---------CEEEEcCCCCcCCHHHHHHHHHh
Confidence 432 46999999999999999999964
No 69
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.86 E-value=2.8e-21 Score=130.87 Aligned_cols=78 Identities=22% Similarity=0.253 Sum_probs=71.4
Q ss_pred CCCCCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEc-----CCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCe
Q 043011 16 EDERSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAA-----DDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANR 90 (133)
Q Consensus 16 ~~~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~-----~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr 90 (133)
...+.++|||+||+++ +++++|+++|++||+|.++.+. ++++|||||+|.+.++|++|++.|||.. +.|+
T Consensus 36 ~~~~~~~l~V~nlp~~--~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~---~~g~ 110 (118)
T 2khc_A 36 EGPEGCNLFIYHLPQE--FTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQ---VGTK 110 (118)
T ss_dssp CCCCSEEEEEECSCTT--CCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCE---ETTE
T ss_pred CCCCCCEEEEeCCCCC--CCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCE---ECCE
Confidence 3456789999999999 9999999999999999999985 3468999999999999999999999999 9999
Q ss_pred eEEEEeee
Q 043011 91 FLHISYSV 98 (133)
Q Consensus 91 ~l~V~~a~ 98 (133)
.|+|+|++
T Consensus 111 ~l~V~~ak 118 (118)
T 2khc_A 111 RLKVQLKK 118 (118)
T ss_dssp ECCEEEC-
T ss_pred EEEEEecC
Confidence 99999974
No 70
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.86 E-value=3e-21 Score=136.00 Aligned_cols=81 Identities=19% Similarity=0.274 Sum_probs=76.2
Q ss_pred CCCCCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEcCCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCeeEEEE
Q 043011 16 EDERSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAADDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRFLHIS 95 (133)
Q Consensus 16 ~~~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~l~V~ 95 (133)
...+.++|||+||+++ +|+++|+++|++||+|.+|.+..+++|||||+|.+.++|.+|+..|||.. +.|++|+|+
T Consensus 69 ~~~~~~~l~V~nl~~~--~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~---~~g~~l~v~ 143 (150)
T 2i2y_A 69 SCPLDCKVYVGNLGNN--GNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRT---LCGCRVRVE 143 (150)
T ss_dssp SSTTSCEEEEESCCSC--CSCHHHHHHHHHHSCEEEEEECSSSCSEEEEEESSHHHHHHHHHHHSSSC---SSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCC--CCHHHHHHHHHhhCCEEEEEEeeCCCcEEEEEECCHHHHHHHHHHcCCCE---ECCeEEEEE
Confidence 4567899999999999 99999999999999999999977789999999999999999999999999 999999999
Q ss_pred eeecCC
Q 043011 96 YSVLED 101 (133)
Q Consensus 96 ~a~~~~ 101 (133)
|+.++.
T Consensus 144 ~a~~~~ 149 (150)
T 2i2y_A 144 LSNGEK 149 (150)
T ss_dssp ECCCCC
T ss_pred EcCCCC
Confidence 998764
No 71
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.86 E-value=3.9e-21 Score=127.57 Aligned_cols=78 Identities=19% Similarity=0.316 Sum_probs=73.5
Q ss_pred CCCCCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEcCCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCeeEEEE
Q 043011 16 EDERSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAADDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRFLHIS 95 (133)
Q Consensus 16 ~~~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~l~V~ 95 (133)
...++++|||+||+++ +|+++|+++|++||+|.+|.+ .+|||||+|.+.++|++|++.|||.. +.|+.|+|+
T Consensus 7 ~~~~~~~l~V~nl~~~--~t~~~l~~~F~~~G~i~~v~~---~~~~afV~f~~~~~a~~A~~~l~g~~---~~g~~l~v~ 78 (103)
T 2dgu_A 7 GMAKVKVLFVRNLANT--VTEEILEKAFSQFGKLERVKK---LKDYAFIHFDERDGAVKAMEEMNGKD---LEGENIEIV 78 (103)
T ss_dssp CCCCCCCEEEECCCTT--CCHHHHHHHHHHHSCEEEEEE---CSSCEEEEESSHHHHHHHHHHHTTEE---ETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCC--CCHHHHHHHHHhcCCEEEEEE---ECCEEEEEeCCHHHHHHHHHHHCCCc---cCCCEEEEE
Confidence 3457899999999999 999999999999999999998 37899999999999999999999999 999999999
Q ss_pred eeecCC
Q 043011 96 YSVLED 101 (133)
Q Consensus 96 ~a~~~~ 101 (133)
|+.++.
T Consensus 79 ~a~~~~ 84 (103)
T 2dgu_A 79 FAKPPD 84 (103)
T ss_dssp ECCCCC
T ss_pred EcCCCc
Confidence 998876
No 72
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.86 E-value=5.2e-21 Score=127.16 Aligned_cols=81 Identities=19% Similarity=0.302 Sum_probs=74.4
Q ss_pred CCCCCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEcC-----CCCCeEEEEECCHHHHHHHHHHhcCCCCCCC---
Q 043011 16 EDERSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAAD-----DSGARVIVSYFDEGSAQAAFNSLHSRPCPDL--- 87 (133)
Q Consensus 16 ~~~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~~-----~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l--- 87 (133)
...+.++|||+||+.+ +++++|+++|++||+|.+|.+.. +++|||||+|.+.++|++|++.|||.. +
T Consensus 9 ~~~~~~~l~V~nlp~~--~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~---~~~~ 83 (106)
T 2dgp_A 9 KDHDAIKLFIGQIPRN--LDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQK---TLPG 83 (106)
T ss_dssp CCTTCEEEEEESCCTT--CCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTC---CCTT
T ss_pred CCCCCCEEEEeCCCCC--CCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCc---ccCC
Confidence 3457899999999999 99999999999999999999853 468999999999999999999999998 7
Q ss_pred CCeeEEEEeeecCC
Q 043011 88 ANRFLHISYSVLED 101 (133)
Q Consensus 88 ~gr~l~V~~a~~~~ 101 (133)
.|+.|+|+|+.++.
T Consensus 84 ~g~~l~v~~a~~~~ 97 (106)
T 2dgp_A 84 MNRPIQVKPADSES 97 (106)
T ss_dssp CSSCCEEEECCCCS
T ss_pred CCceEEEEECCccc
Confidence 89999999998876
No 73
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.86 E-value=2.3e-21 Score=125.74 Aligned_cols=80 Identities=15% Similarity=0.158 Sum_probs=74.4
Q ss_pred CCCCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEc---CCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCeeEE
Q 043011 17 DERSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAA---DDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRFLH 93 (133)
Q Consensus 17 ~~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~---~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~l~ 93 (133)
..+.++|||+||+.+ +++++|+++|++||+|.++.+. +.++|||||+|.+.++|++|++.|||.. +.|+.|+
T Consensus 5 ~~~~~~l~V~nlp~~--~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~---~~g~~l~ 79 (92)
T 2dgv_A 5 SSGACQIFVRNLPFD--FTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMK---LSGREID 79 (92)
T ss_dssp SSSCCEEEECSCCTT--CCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCC---BTTBCCC
T ss_pred CCCCcEEEEeCCCCC--CCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCE---ECCcEEE
Confidence 457899999999999 9999999999999999999884 3468999999999999999999999999 9999999
Q ss_pred EEeeecCC
Q 043011 94 ISYSVLED 101 (133)
Q Consensus 94 V~~a~~~~ 101 (133)
|+|+.+..
T Consensus 80 v~~a~~~~ 87 (92)
T 2dgv_A 80 VRIDRNAS 87 (92)
T ss_dssp CEECSCCS
T ss_pred EEEcCCCC
Confidence 99998876
No 74
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.86 E-value=1.4e-21 Score=129.32 Aligned_cols=81 Identities=14% Similarity=0.226 Sum_probs=70.6
Q ss_pred CCCCCeEEEeccCCCCCCCHHHHHHHhhcCCC--eeEEEEc-----CCCCCeEEEEECCHHHHHHHHHHhcCCCCC-CCC
Q 043011 17 DERSPNLFVANCGPAVGVSYEAIGSVFSAFGD--VKGIYAA-----DDSGARVIVSYFDEGSAQAAFNSLHSRPCP-DLA 88 (133)
Q Consensus 17 ~~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~--V~~v~~~-----~~~kg~afV~f~~~~~A~~A~~~l~g~~~~-~l~ 88 (133)
...-.||||+||+++ +|+++|+++|++||. |.+|++. +++||||||+|.+.++|++|++.|||...+ .++
T Consensus 6 ~~~m~tlfV~nL~~~--~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~ 83 (95)
T 2lkz_A 6 HHHMDTIILRNIAPH--TVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKID 83 (95)
T ss_dssp SCCCCEEEEESCCTT--CCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEET
T ss_pred CCccCEEEEeCCCCc--CCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceEC
Confidence 345789999999999 999999999999995 6688874 457999999999999999999999997422 278
Q ss_pred CeeEEEEeeec
Q 043011 89 NRFLHISYSVL 99 (133)
Q Consensus 89 gr~l~V~~a~~ 99 (133)
||+|.|+||+.
T Consensus 84 Gr~i~V~~Aks 94 (95)
T 2lkz_A 84 GKTIGVDFAKS 94 (95)
T ss_dssp TEEEEEEECCC
T ss_pred CEEEEEEEccC
Confidence 99999999974
No 75
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.86 E-value=2.7e-21 Score=129.48 Aligned_cols=82 Identities=18% Similarity=0.271 Sum_probs=75.1
Q ss_pred CCCCCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEc-----CCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCe
Q 043011 16 EDERSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAA-----DDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANR 90 (133)
Q Consensus 16 ~~~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~-----~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr 90 (133)
...++++|||+||+.+ +++++|+++|++||+|.++.+. +.++|||||+|.+.++|++|+..|||.. +.|+
T Consensus 22 ~~~~~~~l~V~nlp~~--~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~---~~g~ 96 (110)
T 1oo0_B 22 RSVEGWILFVTSIHEE--AQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAE---IMGQ 96 (110)
T ss_dssp CBTTBEEEEEESCCTT--CCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCE---ETTE
T ss_pred CCCCCCEEEEeCCCCC--CCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCE---ECCc
Confidence 4456789999999999 9999999999999999999984 3458999999999999999999999999 9999
Q ss_pred eEEEEeeecCCC
Q 043011 91 FLHISYSVLEDS 102 (133)
Q Consensus 91 ~l~V~~a~~~~~ 102 (133)
.|+|+|+.++.+
T Consensus 97 ~l~V~~a~~~~~ 108 (110)
T 1oo0_B 97 TIQVDWCFVKGP 108 (110)
T ss_dssp ECEEEESEESSC
T ss_pred EEEEEEcccCCC
Confidence 999999998763
No 76
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=2.6e-21 Score=127.15 Aligned_cols=79 Identities=19% Similarity=0.239 Sum_probs=72.9
Q ss_pred CCCCeEEEeccCCCCCCCHHHHH----HHhhcCCCeeEEEEcCC--CCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCee
Q 043011 18 ERSPNLFVANCGPAVGVSYEAIG----SVFSAFGDVKGIYAADD--SGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRF 91 (133)
Q Consensus 18 ~~~~~L~V~Nl~~~~~vte~~L~----~~F~~fG~V~~v~~~~~--~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~ 91 (133)
....+|||+||+++ +++++|+ ++|++||+|.+|.+..+ .+|||||+|.+.++|++|++.|||.. +.|++
T Consensus 7 ~~~~~l~V~nL~~~--~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~---~~gr~ 81 (96)
T 2dgx_A 7 GNGADVQVSNIDYR--LSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYK---IGSKK 81 (96)
T ss_dssp SSCEEEEEESCCTT--SCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEE---ETTEE
T ss_pred CCCCEEEEECCCCC--CCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCE---ECCeE
Confidence 45689999999999 9999999 99999999999998532 38999999999999999999999999 99999
Q ss_pred EEEEeeecCC
Q 043011 92 LHISYSVLED 101 (133)
Q Consensus 92 l~V~~a~~~~ 101 (133)
|+|+|+.+..
T Consensus 82 l~V~~a~~~~ 91 (96)
T 2dgx_A 82 ILVSLATGAS 91 (96)
T ss_dssp EEEEECCCSS
T ss_pred EEEEEcCCCC
Confidence 9999998775
No 77
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=6.2e-21 Score=126.65 Aligned_cols=80 Identities=16% Similarity=0.199 Sum_probs=73.4
Q ss_pred CCCCCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEc------CCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCC
Q 043011 16 EDERSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAA------DDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLAN 89 (133)
Q Consensus 16 ~~~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~------~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~g 89 (133)
...+.++|||+||+++ +++++|+++|++|| |.+|.+. ++++|||||+|.+.++|++|+ .|||.. +.|
T Consensus 11 ~~~~~~~l~V~nlp~~--~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~---~~g 83 (104)
T 1wi8_A 11 PKSPPYTAFLGNLPYD--VTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEES---LGN 83 (104)
T ss_dssp CSSSCEEEEEESCCSS--CCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCE---ETT
T ss_pred CCCCCCEEEEeCCCCc--CCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCE---eCC
Confidence 3457899999999999 99999999999999 9999985 445899999999999999999 999999 999
Q ss_pred eeEEEEeeecCCC
Q 043011 90 RFLHISYSVLEDS 102 (133)
Q Consensus 90 r~l~V~~a~~~~~ 102 (133)
+.|+|+|+.++..
T Consensus 84 ~~l~V~~a~~~~~ 96 (104)
T 1wi8_A 84 KRIRVDVADQAQD 96 (104)
T ss_dssp EECEEEECCCCCC
T ss_pred cEEEEEEccCCCC
Confidence 9999999988863
No 78
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.86 E-value=1.2e-21 Score=133.27 Aligned_cols=79 Identities=8% Similarity=0.044 Sum_probs=72.2
Q ss_pred CCCCeEEEeccCCCCCCCHHHHHHHhhcCC-CeeEEEEc-CCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCeeEEEE
Q 043011 18 ERSPNLFVANCGPAVGVSYEAIGSVFSAFG-DVKGIYAA-DDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRFLHIS 95 (133)
Q Consensus 18 ~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG-~V~~v~~~-~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~l~V~ 95 (133)
....+|||+||+++ +++++|+++|++|| +|..+.+. .+++|||||+|.+.++|++|++.|||.. +.||.|+|+
T Consensus 26 ~~~~~l~VgnLp~~--~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~---l~Gr~i~V~ 100 (111)
T 2jvr_A 26 AKRYRITMKNLPEG--CSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIE---FRGSVITVE 100 (111)
T ss_dssp CCCEEEEEECSSCC--CCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEE---ETTEEEEEE
T ss_pred CCCCEEEEECCCCC--CCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCE---ECCeEEEEE
Confidence 45679999999999 99999999999999 99999984 5689999999999999999999999999 999999999
Q ss_pred eeecCC
Q 043011 96 YSVLED 101 (133)
Q Consensus 96 ~a~~~~ 101 (133)
++...+
T Consensus 101 ~a~~~p 106 (111)
T 2jvr_A 101 RDDNPP 106 (111)
T ss_dssp ESCC--
T ss_pred ECCCCC
Confidence 997654
No 79
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=1.6e-21 Score=124.79 Aligned_cols=76 Identities=16% Similarity=0.319 Sum_probs=71.1
Q ss_pred CCCCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEcCCCCCeEEEEECCHHHHHHHHHHh-cCCCCCCCCCeeEEEE
Q 043011 17 DERSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAADDSGARVIVSYFDEGSAQAAFNSL-HSRPCPDLANRFLHIS 95 (133)
Q Consensus 17 ~~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~~~~kg~afV~f~~~~~A~~A~~~l-~g~~~~~l~gr~l~V~ 95 (133)
..+.++|||+||+++ +++++|+++|++||+|.++.+. +++|||||+|.+.++|++|++.| ||.. +.|++|+|+
T Consensus 9 ~~~~~~l~V~~l~~~--~t~~~l~~~f~~~G~i~~~~~~-~~kg~afV~f~~~~~A~~a~~~l~~~~~---~~g~~l~v~ 82 (85)
T 2ytc_A 9 DKTITTLYVGGLGDT--ITETDLRNHFYQFGEIRTITVV-QRQQCAFIQFATRQAAEVAAEKSFNKLI---VNGRRLNVK 82 (85)
T ss_dssp CSSCCCEEEECCTTT--SCHHHHHHHHHTTSCEEEEEEE-GGGTEEEEEESSHHHHHHHHHTTTTTCE---ETTEECCEE
T ss_pred CCCccEEEEcCCCCC--CCHHHHHHHHHhCCCEeEEEEE-CCCCEEEEEECCHHHHHHHHHHhcCCee---ECCCEEEEE
Confidence 456899999999999 9999999999999999999984 46899999999999999999999 9999 999999999
Q ss_pred eee
Q 043011 96 YSV 98 (133)
Q Consensus 96 ~a~ 98 (133)
||+
T Consensus 83 ~ak 85 (85)
T 2ytc_A 83 WGR 85 (85)
T ss_dssp ECC
T ss_pred ecC
Confidence 984
No 80
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=1.7e-21 Score=131.66 Aligned_cols=78 Identities=18% Similarity=0.282 Sum_probs=73.1
Q ss_pred CCCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEcCCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCeeEEEEee
Q 043011 18 ERSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAADDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRFLHISYS 97 (133)
Q Consensus 18 ~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~l~V~~a 97 (133)
...++|||+||+++ +++++|+++|++||.|.+|.+ .+++|||||+|.+.++|++|++.|||.. +.|+.|+|+|+
T Consensus 8 ~~~~~l~V~nLp~~--~te~~L~~~F~~~G~i~~v~i-~~~~g~afV~f~~~~~A~~Ai~~l~g~~---~~g~~l~V~~a 81 (111)
T 1whx_A 8 RSKTVILAKNLPAG--TLAAEIQETFSRFGSLGRVLL-PEGGITAIVEFLEPLEARKAFRHLAYSK---FHHVPLYLEWA 81 (111)
T ss_dssp EEEEEEEEESCCTT--CCHHHHHHHHHTTSCEEEEEC-CSSSSCEEEEESCHHHHHHHHHHHTTCB---SSSSBCEEEEE
T ss_pred CCCCEEEEeCCCCC--CCHHHHHHHHHhcCCEEEEEE-eCCCCEEEEEeCCHHHHHHHHHHhCCCE---ECCeEEEEEEC
Confidence 35689999999999 999999999999999999998 4689999999999999999999999999 99999999999
Q ss_pred ecCC
Q 043011 98 VLED 101 (133)
Q Consensus 98 ~~~~ 101 (133)
....
T Consensus 82 ~~~~ 85 (111)
T 1whx_A 82 PIGV 85 (111)
T ss_dssp ETTT
T ss_pred CCCc
Confidence 8765
No 81
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.85 E-value=4.1e-21 Score=146.66 Aligned_cols=110 Identities=17% Similarity=0.265 Sum_probs=98.0
Q ss_pred CCCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEc-----CCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCeeE
Q 043011 18 ERSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAA-----DDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRFL 92 (133)
Q Consensus 18 ~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~-----~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~l 92 (133)
.+..+|||+||+++ +|+++|+++|++||+|.++.+. +.++|||||+|.+.++|.+|+..|||.. +.|+.|
T Consensus 93 ~~~~~l~v~nlp~~--~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~---~~g~~i 167 (284)
T 3smz_A 93 PTDALLCVANLPPS--LTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKP---LGPRTL 167 (284)
T ss_dssp CCSCEEEEESCCTT--CCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCE---ETTEEC
T ss_pred CCCCEEEEcCCCCc--CCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCE---eCCcEE
Confidence 45689999999999 9999999999999999999874 3468999999999999999999999999 999999
Q ss_pred EEEeeecCCCCCCCCCcceeEeeecCCCC-Cchhhhhhhcc
Q 043011 93 HISYSVLEDSPATRHITSSVPVSLVASEL-NIPGLHSCFMT 132 (133)
Q Consensus 93 ~V~~a~~~~~~~~~~~~~~l~v~nl~~~~-~~~~l~~~f~~ 132 (133)
.|.|+.++..........+|+|+|||.++ +..+|+++|..
T Consensus 168 ~v~~a~~~~~~~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~ 208 (284)
T 3smz_A 168 YVHWTDAGQLTPALLHSRCLCVDRLPPGFNDVDALCRALSA 208 (284)
T ss_dssp EEEECCGGGCCTTTTSCSEEEEECCCTTCCCHHHHHHHTCS
T ss_pred EEEECCCCCCCcccCCccEEEEecCCcccCCHHHHHHHhhC
Confidence 99999887744445566789999999996 89999999964
No 82
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.85 E-value=5.5e-21 Score=128.86 Aligned_cols=82 Identities=20% Similarity=0.374 Sum_probs=75.2
Q ss_pred CCCCCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEcC-----CCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCe
Q 043011 16 EDERSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAAD-----DSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANR 90 (133)
Q Consensus 16 ~~~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~~-----~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr 90 (133)
...+.++|||+||+++ +++++|+++|++||.|.+|.+.. .++|||||+|.+.++|++|++.|||.. +.|+
T Consensus 11 ~~~~~~~l~V~nlp~~--~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~---~~g~ 85 (115)
T 2dgo_A 11 DTSNHFHVFVGDLSPE--ITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQW---LGGR 85 (115)
T ss_dssp CSTTCEEEEEESCCTT--CCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCE---ETTE
T ss_pred CCCCCcEEEEeCCCCC--CCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCE---ECCE
Confidence 4467899999999999 99999999999999999998842 347999999999999999999999999 9999
Q ss_pred eEEEEeeecCCC
Q 043011 91 FLHISYSVLEDS 102 (133)
Q Consensus 91 ~l~V~~a~~~~~ 102 (133)
.|+|+|+.++.+
T Consensus 86 ~l~V~~a~~~~~ 97 (115)
T 2dgo_A 86 QIRTNWATRKPP 97 (115)
T ss_dssp ECEEEESSCCCC
T ss_pred EEEEEEccCCCC
Confidence 999999998873
No 83
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=4.5e-21 Score=124.27 Aligned_cols=77 Identities=19% Similarity=0.261 Sum_probs=72.8
Q ss_pred CCCCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEcCCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCeeEEEEe
Q 043011 17 DERSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAADDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRFLHISY 96 (133)
Q Consensus 17 ~~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~l~V~~ 96 (133)
..+.++|||+||+++ +|+++|+++|++||+|.++.+. ++||||+|.+.++|++|++.|||.. +.|+.|+|+|
T Consensus 6 ~~~~~~l~V~nlp~~--~t~~~l~~~F~~~G~v~~~~~~---~~~afV~f~~~~~a~~A~~~l~g~~---~~g~~l~v~~ 77 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAA--CTSQELRSLFERRGRVIECDVV---KDYAFVHMEKEADAKAAIAQLNGKE---VKGKRINVEL 77 (90)
T ss_dssp SCCSCCEEEESCCTT--CCHHHHHHHHHHHSCEEEEEEC---SSCEEEEESCHHHHHHHHHHHTTCE---ETTEECEEEE
T ss_pred CCCCCEEEEeCCCCC--CCHHHHHHHHHcCCCEEEEEEE---CCEEEEEECCHHHHHHHHHHhCCCE---ECCcEEEEEE
Confidence 457899999999999 9999999999999999999994 6799999999999999999999999 9999999999
Q ss_pred eecCC
Q 043011 97 SVLED 101 (133)
Q Consensus 97 a~~~~ 101 (133)
+.++.
T Consensus 78 a~~~~ 82 (90)
T 2dnp_A 78 STKGQ 82 (90)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 98876
No 84
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=8.7e-21 Score=128.20 Aligned_cols=80 Identities=18% Similarity=0.251 Sum_probs=73.6
Q ss_pred CCCCCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEc-----CCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCe
Q 043011 16 EDERSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAA-----DDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANR 90 (133)
Q Consensus 16 ~~~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~-----~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr 90 (133)
...+.++|||+||+++ +|+++|+++|++||+|.+|.+. ++++|||||+|.+.++|++|++.+|+ . +.|+
T Consensus 13 ~~~~~~~l~V~nlp~~--~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~---~~g~ 86 (116)
T 2cqd_A 13 KDTTFTKIFVGGLPYH--TTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-I---IDGR 86 (116)
T ss_dssp CSCSSSEEEEECCCSS--CCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-E---ETTE
T ss_pred CCCCCCEEEEeCCCCC--CCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-c---CCCE
Confidence 4567899999999999 9999999999999999999985 34689999999999999999999998 8 9999
Q ss_pred eEEEEeeecCC
Q 043011 91 FLHISYSVLED 101 (133)
Q Consensus 91 ~l~V~~a~~~~ 101 (133)
.|+|+|+.++.
T Consensus 87 ~l~V~~a~~~~ 97 (116)
T 2cqd_A 87 KANVNLAYLGA 97 (116)
T ss_dssp ECEEEESTTTC
T ss_pred EEEEEEcccCC
Confidence 99999998765
No 85
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.85 E-value=6.3e-22 Score=131.28 Aligned_cols=79 Identities=18% Similarity=0.144 Sum_probs=73.0
Q ss_pred CCCCeEEEeccCC------CCCCCHHHHHHHhhcCCCeeEEEEc-----CCCCCeEEEEECCHHHHHHHHHHhcCCCCCC
Q 043011 18 ERSPNLFVANCGP------AVGVSYEAIGSVFSAFGDVKGIYAA-----DDSGARVIVSYFDEGSAQAAFNSLHSRPCPD 86 (133)
Q Consensus 18 ~~~~~L~V~Nl~~------~~~vte~~L~~~F~~fG~V~~v~~~-----~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~ 86 (133)
..+++|||+|||. + +++++|+++|++||+|.+|.+. ++++|||||+|.+.++|++|++.|||+.
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~--~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~--- 78 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVP--VLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKR--- 78 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHH--HHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCB---
T ss_pred CcCcEEEEeCCCcCChHHHH--HHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcc---
Confidence 4578999999999 9 9999999999999999999985 4578999999999999999999999999
Q ss_pred CCC-eeEEEEeeecCC
Q 043011 87 LAN-RFLHISYSVLED 101 (133)
Q Consensus 87 l~g-r~l~V~~a~~~~ 101 (133)
+.| +.|+|.++.++.
T Consensus 79 ~~g~r~l~V~~a~~~~ 94 (100)
T 3ns6_A 79 LDLKHRLFLYTMKDVE 94 (100)
T ss_dssp SSSSCBCEEEESHHHH
T ss_pred cCCCeEEEEEECchhh
Confidence 999 999999997754
No 86
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.85 E-value=4.1e-21 Score=126.49 Aligned_cols=78 Identities=22% Similarity=0.356 Sum_probs=71.3
Q ss_pred CCCCCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeE--------EEEc-----CCCCCeEEEEECCHHHHHHHHHHhcCC
Q 043011 16 EDERSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKG--------IYAA-----DDSGARVIVSYFDEGSAQAAFNSLHSR 82 (133)
Q Consensus 16 ~~~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~--------v~~~-----~~~kg~afV~f~~~~~A~~A~~~l~g~ 82 (133)
...+..+|||+||+.+ +++++|+++|++||.|.+ +.+. ++++|||||+|.+.++|++|++.|||.
T Consensus 9 ~~~~~~~l~V~nLp~~--~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~ 86 (99)
T 2la6_A 9 SHSDNNTIFVQGLGEN--VTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGK 86 (99)
T ss_dssp SCCCCSEEEEECCCSS--CCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTC
T ss_pred CCCCCCEEEEeCCCCC--CCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCC
Confidence 3467899999999999 999999999999999998 8764 345899999999999999999999999
Q ss_pred CCCCCCCeeEEEEeee
Q 043011 83 PCPDLANRFLHISYSV 98 (133)
Q Consensus 83 ~~~~l~gr~l~V~~a~ 98 (133)
. +.|+.|+|+||+
T Consensus 87 ~---~~g~~l~V~~A~ 99 (99)
T 2la6_A 87 E---FSGNPIKVSFAT 99 (99)
T ss_dssp B---SSSSBCEEEECC
T ss_pred E---eCCcEEEEEecC
Confidence 9 999999999974
No 87
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.85 E-value=2.2e-21 Score=130.63 Aligned_cols=78 Identities=24% Similarity=0.379 Sum_probs=73.6
Q ss_pred CCCCCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEcCCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCeeEEEE
Q 043011 16 EDERSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAADDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRFLHIS 95 (133)
Q Consensus 16 ~~~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~l~V~ 95 (133)
...++++|||+||+++ +++++|+++|++||+|.++.+. +|||||+|.+.++|++|++.|||.. +.|+.|+|+
T Consensus 27 ~~~~~~~l~V~nLp~~--~t~~~L~~~F~~~G~i~~v~i~---kg~afV~f~~~~~A~~Ai~~l~g~~---~~g~~l~V~ 98 (108)
T 2jvo_A 27 GELSNTRLFVRPFPLD--VQESELNEIFGPFGPMKEVKIL---NGFAFVEFEEAESAAKAIEEVHGKS---FANQPLEVV 98 (108)
T ss_dssp -CCSCSEEEECSSCTT--CCHHHHHHHHTTTSCCCEEEEE---TTEEEEECSSHHHHHHHHHHHTTCE---ETTEECEEE
T ss_pred CCCCCCEEEEECCCCC--CCHHHHHHHHHhcCCEEEEEEE---CCEEEEEECCHHHHHHHHHHcCCCE---ECCeEEEEE
Confidence 5667899999999999 9999999999999999999995 8999999999999999999999999 999999999
Q ss_pred eeecCC
Q 043011 96 YSVLED 101 (133)
Q Consensus 96 ~a~~~~ 101 (133)
|+.++.
T Consensus 99 ~a~~~~ 104 (108)
T 2jvo_A 99 YSKLPA 104 (108)
T ss_dssp SCSCCC
T ss_pred EecCCC
Confidence 998875
No 88
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.85 E-value=3.6e-21 Score=129.40 Aligned_cols=81 Identities=17% Similarity=0.279 Sum_probs=74.3
Q ss_pred CCCCCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEc-----CCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCe
Q 043011 16 EDERSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAA-----DDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANR 90 (133)
Q Consensus 16 ~~~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~-----~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr 90 (133)
...++++|||+||+++ +++++|+++|++||+|.+|.+. +.++|||||+|.+.++|++|++.|||.. +.|+
T Consensus 22 ~~~~~~~l~V~nLp~~--~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~---i~g~ 96 (108)
T 2jrs_A 22 GSAGPMRLYVGSLHFN--ITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFE---LAGR 96 (108)
T ss_dssp SCSSCEEEEEECCCSS--CCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCC---SSSS
T ss_pred CCCCCCEEEEeCCCCC--CCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCE---ECCE
Confidence 4567899999999999 9999999999999999999874 3458999999999999999999999999 9999
Q ss_pred eEEEEeeecCC
Q 043011 91 FLHISYSVLED 101 (133)
Q Consensus 91 ~l~V~~a~~~~ 101 (133)
.|+|+|+.++.
T Consensus 97 ~l~V~~a~~k~ 107 (108)
T 2jrs_A 97 PMKVGHVTERT 107 (108)
T ss_dssp CCEEECSCSSC
T ss_pred EEEEEEcccCC
Confidence 99999998764
No 89
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=1.6e-21 Score=126.97 Aligned_cols=79 Identities=22% Similarity=0.324 Sum_probs=72.3
Q ss_pred CCCCCCeEEEeccCCCCCCCHHHHHHHhhcCCC-eeEEEEcCCCCCeEEEEECCHHHHHHHHHHhcC-CCCCCCCCeeEE
Q 043011 16 EDERSPNLFVANCGPAVGVSYEAIGSVFSAFGD-VKGIYAADDSGARVIVSYFDEGSAQAAFNSLHS-RPCPDLANRFLH 93 (133)
Q Consensus 16 ~~~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~-V~~v~~~~~~kg~afV~f~~~~~A~~A~~~l~g-~~~~~l~gr~l~ 93 (133)
...+.++|||+||+++ +|+++|+++|++||+ |..+.+ .++|||||+|.+.++|++|++.||| .. +.|+.|+
T Consensus 4 ~~~~~~~l~V~nLp~~--~t~~~l~~~F~~~G~vv~~~~~--~~~g~afV~f~~~~~A~~A~~~l~g~~~---~~g~~l~ 76 (93)
T 2cqh_A 4 GSSGMNKLYIGNLSPA--VTADDLRQLFGDRKLPLAGQVL--LKSGYAFVDYPDQNWAIRAIETLSGKVE---LHGKIME 76 (93)
T ss_dssp CCCCCCCEEEECCCTT--CCHHHHHHHHHHTTCCCSSCEE--EETTEEEECCSCHHHHHHHHHHHTTTCE---ETTEECE
T ss_pred CCCCCcEEEEeCCCCC--CCHHHHHHHHHHcCCceEEEEE--cCCCEEEEEECCHHHHHHHHHHccCCee---ECCEEEE
Confidence 3457899999999999 999999999999999 666666 3689999999999999999999999 88 9999999
Q ss_pred EEeeecCC
Q 043011 94 ISYSVLED 101 (133)
Q Consensus 94 V~~a~~~~ 101 (133)
|+|+.++.
T Consensus 77 v~~a~~~~ 84 (93)
T 2cqh_A 77 VDYSVSKK 84 (93)
T ss_dssp EEECCCCC
T ss_pred EEEccCcc
Confidence 99998876
No 90
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=2.8e-21 Score=131.77 Aligned_cols=80 Identities=13% Similarity=0.100 Sum_probs=72.8
Q ss_pred CCCCCCeEEEeccCC-CCCCCHHHHHHHhhcCCCeeEEEEcCCCCCeEEEEECCHHHHHHHHHHhc--CCCCCCCCCeeE
Q 043011 16 EDERSPNLFVANCGP-AVGVSYEAIGSVFSAFGDVKGIYAADDSGARVIVSYFDEGSAQAAFNSLH--SRPCPDLANRFL 92 (133)
Q Consensus 16 ~~~~~~~L~V~Nl~~-~~~vte~~L~~~F~~fG~V~~v~~~~~~kg~afV~f~~~~~A~~A~~~l~--g~~~~~l~gr~l 92 (133)
...|+++|||+||++ . +++++|+++|++||+|.+|.+ .++||||||+|.+.++|++|++.|| +.. +.||+|
T Consensus 21 ~~~p~~~l~V~NLp~~~--~te~~L~~lF~~fG~V~~v~i-~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~---l~Gr~l 94 (112)
T 1x4f_A 21 KQELGRVIHLSNLPHSG--YSDSAVLKLAEPYGKIKNYIL-MRMKSQAFIEMETREDAMAMVDHCLKKALW---FQGRCV 94 (112)
T ss_dssp SSCCCCEEEEESCCCSS--CCSHHHHTTTTTTSCCSEEEE-ETTTTEEEEECSSHHHHHHHHHHHHHSCCC---SSSSCC
T ss_pred cCCCCCEEEEeCCCCcc--CCHHHHHHHHHhcCCEEEEEE-ecCCCEEEEEECCHHHHHHHHHHhccCCce---ECCEEE
Confidence 356899999999998 6 899999999999999999998 4679999999999999999999886 456 899999
Q ss_pred EEEeeecCC
Q 043011 93 HISYSVLED 101 (133)
Q Consensus 93 ~V~~a~~~~ 101 (133)
+|+||.++.
T Consensus 95 ~V~~a~~~~ 103 (112)
T 1x4f_A 95 KVDLSEKYK 103 (112)
T ss_dssp EEEEECSCS
T ss_pred EEEECcccc
Confidence 999998775
No 91
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=2.3e-21 Score=128.42 Aligned_cols=81 Identities=16% Similarity=0.286 Sum_probs=74.7
Q ss_pred CCCCCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEc-----CCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCe
Q 043011 16 EDERSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAA-----DDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANR 90 (133)
Q Consensus 16 ~~~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~-----~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr 90 (133)
...++++|||+||+++ +++++|+++|++||+|.+|.+. +.++|||||+|.+.++|++|++.|||.. +.|+
T Consensus 11 ~~~~~~~l~V~nlp~~--~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~---~~g~ 85 (103)
T 2cq0_A 11 RADDNATIRVTNLSED--TRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFG---YDHL 85 (103)
T ss_dssp CCSSSEEEEEESCCTT--CCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCE---ETTE
T ss_pred CCCCCCEEEEeCCCCC--CCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCe---eCCc
Confidence 3457899999999999 9999999999999999999884 3457999999999999999999999999 9999
Q ss_pred eEEEEeeecCC
Q 043011 91 FLHISYSVLED 101 (133)
Q Consensus 91 ~l~V~~a~~~~ 101 (133)
.|+|+|+.++.
T Consensus 86 ~l~v~~a~~~~ 96 (103)
T 2cq0_A 86 ILNVEWAKPST 96 (103)
T ss_dssp ECEEEESSCCC
T ss_pred EEEEEECCCCC
Confidence 99999998876
No 92
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=2.2e-21 Score=132.71 Aligned_cols=84 Identities=17% Similarity=0.213 Sum_probs=73.2
Q ss_pred CCCCCCCeEEE--eccCCCCCCCHHHHHHHhhcCCCeeEEEEcCCCCCeEEEEECCHHHHHHHHHHhcCCCC-CCC-CCe
Q 043011 15 GEDERSPNLFV--ANCGPAVGVSYEAIGSVFSAFGDVKGIYAADDSGARVIVSYFDEGSAQAAFNSLHSRPC-PDL-ANR 90 (133)
Q Consensus 15 ~~~~~~~~L~V--~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~~-~~l-~gr 90 (133)
....|+++||| +||+.+ +|+++|+++|++||+|.+|.+. ..||||||+|.+.++|++|+++|||+.+ ..+ .|+
T Consensus 20 ~~~~pt~~L~V~Ng~L~~~--~te~~L~~~F~~fG~v~~v~i~-~~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~ 96 (114)
T 2cq2_A 20 TVSYATQSLVVANGGLGNG--VSRNQLLPVLEKCGLVDALLMP-PNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKI 96 (114)
T ss_dssp CCSSCCSEEEEETCTGGGT--CCHHHHHHHHHHHSCEEEEECC-TTCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEE
T ss_pred CCCCCCCEEEEECCCCCCC--CCHHHHHHHHHhcCCeEEEEEe-CCCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCc
Confidence 35678999999 669999 9999999999999999999984 5699999999999999999999999982 111 689
Q ss_pred eEEEEeeecCC
Q 043011 91 FLHISYSVLED 101 (133)
Q Consensus 91 ~l~V~~a~~~~ 101 (133)
+|+|.|+...+
T Consensus 97 ~l~v~~a~~~p 107 (114)
T 2cq2_A 97 TLYLNFVEKVQ 107 (114)
T ss_dssp ECEEEEESCCC
T ss_pred EEEEEecccCc
Confidence 99999997554
No 93
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=3.9e-21 Score=129.26 Aligned_cols=80 Identities=16% Similarity=0.217 Sum_probs=74.1
Q ss_pred CCCCCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEcC---CCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCeeE
Q 043011 16 EDERSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAAD---DSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRFL 92 (133)
Q Consensus 16 ~~~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~~---~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~l 92 (133)
...+.++|||+||+.+ +++++|+++|++||+|.++.+.. .++|||||+|.+.++|++|++.|||.. +.|+.|
T Consensus 25 ~~~~~~~l~V~nLp~~--~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~---~~g~~l 99 (109)
T 2err_A 25 NKSQPKRLHVSNIPFR--FRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTV---VEGRKI 99 (109)
T ss_dssp CTTCCCEEEEESCCTT--CCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCE---ETTEEC
T ss_pred CCCCCCEEEEECCCCc--CCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCE---ECCEEE
Confidence 4557899999999999 99999999999999999999852 358999999999999999999999999 999999
Q ss_pred EEEeeecC
Q 043011 93 HISYSVLE 100 (133)
Q Consensus 93 ~V~~a~~~ 100 (133)
+|+|+.++
T Consensus 100 ~V~~a~~~ 107 (109)
T 2err_A 100 EVNNATAR 107 (109)
T ss_dssp EEEECCCS
T ss_pred EEEECCCC
Confidence 99999876
No 94
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.85 E-value=2.6e-21 Score=135.10 Aligned_cols=76 Identities=29% Similarity=0.331 Sum_probs=71.0
Q ss_pred CeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEcCCCCCe-EEEEECCHHHHHHHHHHhcCCCCCCCCC--eeEEEEee
Q 043011 21 PNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAADDSGAR-VIVSYFDEGSAQAAFNSLHSRPCPDLAN--RFLHISYS 97 (133)
Q Consensus 21 ~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~~~~kg~-afV~f~~~~~A~~A~~~l~g~~~~~l~g--r~l~V~~a 97 (133)
-.|||+||++. +|+++|+++|++||+|.+|.+..+.+|| |||+|.+.++|++|+++|||+. +.| +.|+|+||
T Consensus 29 L~I~V~NL~~~--vte~~L~~lFs~yG~V~~V~i~~~~~gfqAFVef~~~~~A~~Ai~~LnG~~---i~g~~~~LrI~~a 103 (130)
T 3zzy_A 29 LRIIVENLFYP--VTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQN---IYNACCTLRIDFS 103 (130)
T ss_dssp EEEEEESCCSC--CCHHHHHHHHTTSSCEEEEEEEEETTEEEEEEEESCHHHHHHHHHHHTTCE---EETTEEEEEEEEC
T ss_pred EEEEECCCCCC--CCHHHHHHHHhCcCCEEEEEEEcCCCCcEEEEEECCHHHHHHHHHHcCCCe---ecCCCcEEEEEec
Confidence 35669999999 9999999999999999999987777888 9999999999999999999999 988 99999999
Q ss_pred ecCC
Q 043011 98 VLED 101 (133)
Q Consensus 98 ~~~~ 101 (133)
+++.
T Consensus 104 k~~~ 107 (130)
T 3zzy_A 104 KLTS 107 (130)
T ss_dssp SCSS
T ss_pred CCCc
Confidence 9876
No 95
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.85 E-value=6.8e-21 Score=130.30 Aligned_cols=82 Identities=21% Similarity=0.294 Sum_probs=75.3
Q ss_pred CCCCCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEc-----CCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCe
Q 043011 16 EDERSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAA-----DDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANR 90 (133)
Q Consensus 16 ~~~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~-----~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr 90 (133)
...++++|||+||+++ +|+++|+++|++||+|.+|.+. +.++|||||+|.+.++|++|++.|||.. +.|+
T Consensus 18 ~~~~~~~l~V~nlp~~--~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~---~~g~ 92 (126)
T 3ex7_B 18 RSVEGWILFVTGVHEE--ATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQD---LMGQ 92 (126)
T ss_dssp CCSSSEEEEEESCCTT--CCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCB---SSSS
T ss_pred CCCCCCEEEEeCCCCC--CCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCe---eCCe
Confidence 4556789999999999 9999999999999999999984 3458999999999999999999999999 9999
Q ss_pred eEEEEeeecCCC
Q 043011 91 FLHISYSVLEDS 102 (133)
Q Consensus 91 ~l~V~~a~~~~~ 102 (133)
.|+|+|+.++.+
T Consensus 93 ~l~v~~a~~~~~ 104 (126)
T 3ex7_B 93 PISVDWCFVRGP 104 (126)
T ss_dssp BCEEEESEESSS
T ss_pred EEEEEEecCCCC
Confidence 999999998773
No 96
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.85 E-value=2.4e-21 Score=126.73 Aligned_cols=80 Identities=18% Similarity=0.380 Sum_probs=74.0
Q ss_pred CCCCCeEEEeccCCCCCCCHHHHH----HHhhcCCCeeEEEEc--CCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCe
Q 043011 17 DERSPNLFVANCGPAVGVSYEAIG----SVFSAFGDVKGIYAA--DDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANR 90 (133)
Q Consensus 17 ~~~~~~L~V~Nl~~~~~vte~~L~----~~F~~fG~V~~v~~~--~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr 90 (133)
..++++|||+||+++ +++++|+ ++|++||+|.+|.+. ++++|||||+|.+.++|++|++.|||.. +.|+
T Consensus 5 ~~~~~~l~V~nLp~~--~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~---~~g~ 79 (97)
T 1nu4_A 5 TRPNHTIYINNLNEK--IKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFP---FYDK 79 (97)
T ss_dssp -CCCSEEEEESCCTT--SCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCE---ETTE
T ss_pred CCCCCEEEEeCCCCC--CCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCE---ECCc
Confidence 467899999999999 9999999 999999999999984 2568999999999999999999999999 9999
Q ss_pred eEEEEeeecCC
Q 043011 91 FLHISYSVLED 101 (133)
Q Consensus 91 ~l~V~~a~~~~ 101 (133)
.|+|+|+.++.
T Consensus 80 ~l~v~~a~~~~ 90 (97)
T 1nu4_A 80 PMRIQYAKTDS 90 (97)
T ss_dssp ECEEEECSSCC
T ss_pred EEEEEEccCCC
Confidence 99999998875
No 97
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=1e-20 Score=126.76 Aligned_cols=77 Identities=13% Similarity=0.195 Sum_probs=72.6
Q ss_pred CCCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEcCCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCC-----eeE
Q 043011 18 ERSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAADDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLAN-----RFL 92 (133)
Q Consensus 18 ~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~g-----r~l 92 (133)
....+|||+||+++ +++++|+++|++||+|.++.+..+ |||||+|.+.++|++|++.|||+. +.| +.|
T Consensus 13 ~~~~~l~V~nLp~~--~t~~~l~~~F~~~G~i~~~~i~~~--g~afV~f~~~~~a~~Ai~~l~g~~---~~g~~~~~~~i 85 (108)
T 1x4c_A 13 RSENRVVVSGLPPS--GSWQDLKDHMREAGDVCYADVYRD--GTGVVEFVRKEDMTYAVRKLDNTK---FRSHEGETAYI 85 (108)
T ss_dssp SCCCEEEEESCCSS--CCHHHHHHHHGGGSCEEEEEEETT--TEEEEEESSHHHHHHHHHHSSSEE---EECTTSCEEEE
T ss_pred CCCCEEEEeCCCCC--CCHHHHHHHHHhcCCEeEEEEecC--CEEEEEECCHHHHHHHHHHHCcCC---ccCCcCcceEE
Confidence 46789999999999 999999999999999999998544 999999999999999999999999 999 999
Q ss_pred EEEeeecCC
Q 043011 93 HISYSVLED 101 (133)
Q Consensus 93 ~V~~a~~~~ 101 (133)
+|+++.++.
T Consensus 86 ~V~~a~~~~ 94 (108)
T 1x4c_A 86 RVKVDGPRS 94 (108)
T ss_dssp EEEESSCCS
T ss_pred EEEeCCCCC
Confidence 999999876
No 98
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.85 E-value=1.1e-20 Score=128.54 Aligned_cols=80 Identities=11% Similarity=0.271 Sum_probs=74.2
Q ss_pred CCCCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEc----CCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCeeE
Q 043011 17 DERSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAA----DDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRFL 92 (133)
Q Consensus 17 ~~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~----~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~l 92 (133)
..+.++|||+||+.+ +++++|+++|++||+|.+|.+. +.++|||||+|.+.++|++|++.|||.. +.|+.|
T Consensus 4 ~~~~~~l~V~nLp~~--~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~---~~g~~l 78 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRE--TNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKS---LHGKAI 78 (116)
T ss_dssp TCSCCEEEEECCTTT--CCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCB---CSSSBC
T ss_pred CCCCCEEEEeCCCCC--CCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCE---ECCEEE
Confidence 456899999999999 9999999999999999999884 3468999999999999999999999999 999999
Q ss_pred EEEeeecCC
Q 043011 93 HISYSVLED 101 (133)
Q Consensus 93 ~V~~a~~~~ 101 (133)
+|+|+.++.
T Consensus 79 ~V~~a~~~~ 87 (116)
T 2fy1_A 79 KVEQAKKPS 87 (116)
T ss_dssp EEEECCCSS
T ss_pred EEEECCCCC
Confidence 999998776
No 99
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=9.3e-21 Score=127.39 Aligned_cols=82 Identities=22% Similarity=0.301 Sum_probs=74.5
Q ss_pred CCCCCCeEEEeccCCCCCCCHHHHHHHhhcCCCee--------EEEEc-----CCCCCeEEEEECCHHHHHHHHHHhcCC
Q 043011 16 EDERSPNLFVANCGPAVGVSYEAIGSVFSAFGDVK--------GIYAA-----DDSGARVIVSYFDEGSAQAAFNSLHSR 82 (133)
Q Consensus 16 ~~~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~--------~v~~~-----~~~kg~afV~f~~~~~A~~A~~~l~g~ 82 (133)
...+.++|||+||+++ +++++|+++|++||.|. .|.+. ++++|||||+|.+.++|++|++.|||.
T Consensus 11 ~~~~~~~l~V~nLp~~--~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~ 88 (113)
T 2cpe_A 11 EDSDNSAIYVQGLNDS--VTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGK 88 (113)
T ss_dssp CCCCCCEEEEECCCTT--CCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTC
T ss_pred cCCCCCEEEEcCCCCC--CCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCC
Confidence 4567899999999999 99999999999999998 57774 245899999999999999999999999
Q ss_pred CCCCCCCeeEEEEeeecCCC
Q 043011 83 PCPDLANRFLHISYSVLEDS 102 (133)
Q Consensus 83 ~~~~l~gr~l~V~~a~~~~~ 102 (133)
. +.|+.|+|+|+.++.+
T Consensus 89 ~---~~g~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 89 D---FQGSKLKVSLARKKPP 105 (113)
T ss_dssp E---ETTEECEEECSSCCCC
T ss_pred c---cCCCEEEEEECCCCCC
Confidence 9 9999999999988863
No 100
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.85 E-value=8.3e-22 Score=128.04 Aligned_cols=76 Identities=18% Similarity=0.141 Sum_probs=65.5
Q ss_pred CeEEEeccCCCCCCCHHHHHHHhhcCC--CeeEEEEc-----CCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCeeEE
Q 043011 21 PNLFVANCGPAVGVSYEAIGSVFSAFG--DVKGIYAA-----DDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRFLH 93 (133)
Q Consensus 21 ~~L~V~Nl~~~~~vte~~L~~~F~~fG--~V~~v~~~-----~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~l~ 93 (133)
.+|||+||+++ +|+++|+++|++|| +|.++.+. ++++|||||+|.+.++|++|++.|||.. +.||.|+
T Consensus 2 ~~l~V~nL~~~--~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~---~~gr~i~ 76 (90)
T 3p5t_L 2 IALYIGNLTWW--TTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRE---LHGQNPV 76 (90)
T ss_dssp --CEEESCCTT--CCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSC---SSSCCCE
T ss_pred eEEEEeCCCCC--CCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCe---eCCEEEE
Confidence 47999999999 99999999999999 99999873 3568999999999999999999999999 9999999
Q ss_pred EEeeecCC
Q 043011 94 ISYSVLED 101 (133)
Q Consensus 94 V~~a~~~~ 101 (133)
|.++.++.
T Consensus 77 V~~~~~~~ 84 (90)
T 3p5t_L 77 VTPSNKLE 84 (90)
T ss_dssp ECCC----
T ss_pred EEECCCCc
Confidence 99998876
No 101
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.84 E-value=9.6e-21 Score=127.68 Aligned_cols=80 Identities=21% Similarity=0.323 Sum_probs=74.3
Q ss_pred CCCCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEc--CCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCeeEEE
Q 043011 17 DERSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAA--DDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRFLHI 94 (133)
Q Consensus 17 ~~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~--~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~l~V 94 (133)
..++++|||+||+++ +++++|+++|++||.|.++.+. +.++|||||+|.+.++|.+|+..|||.. +.|+.|+|
T Consensus 5 ~~~~~~l~V~nlp~~--~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~---~~g~~l~v 79 (115)
T 3lqv_A 5 PEVNRILYIRNLPYK--ITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFN---VSNRYLVV 79 (115)
T ss_dssp TTCCSEEEEESCCTT--CCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCB---SSSCBCEE
T ss_pred CCCCCEEEEeCCCCC--CCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCE---ECCeEEEE
Confidence 457899999999999 9999999999999999999884 4568999999999999999999999999 99999999
Q ss_pred EeeecCC
Q 043011 95 SYSVLED 101 (133)
Q Consensus 95 ~~a~~~~ 101 (133)
+|+.++.
T Consensus 80 ~~a~~~~ 86 (115)
T 3lqv_A 80 LYYNANR 86 (115)
T ss_dssp EECCHHH
T ss_pred EEecCCh
Confidence 9998765
No 102
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.2e-20 Score=127.10 Aligned_cols=81 Identities=16% Similarity=0.260 Sum_probs=73.4
Q ss_pred CCCCCCeEEEeccCCCCCCCHHHHHHHhhcCCCe----eEEEE-cCCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCe
Q 043011 16 EDERSPNLFVANCGPAVGVSYEAIGSVFSAFGDV----KGIYA-ADDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANR 90 (133)
Q Consensus 16 ~~~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V----~~v~~-~~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr 90 (133)
...++++|||+||+++ +|+++|+++|++||.| ..+.+ .++++|||||+|.+.++|++|++.|||.. +.|+
T Consensus 21 ~~~~~~~l~V~nLp~~--~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~---~~g~ 95 (115)
T 2cpx_A 21 PGEPNKVLYLKNLSPR--VTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYK---LYGK 95 (115)
T ss_dssp CCSCCSEEEEECCCTT--CCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCB---CSSC
T ss_pred CCCCCCEEEEeCCCCC--CCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCE---eCCc
Confidence 3457899999999999 9999999999999998 45544 46789999999999999999999999999 9999
Q ss_pred eEEEEeeecCC
Q 043011 91 FLHISYSVLED 101 (133)
Q Consensus 91 ~l~V~~a~~~~ 101 (133)
.|+|+|+.++.
T Consensus 96 ~l~v~~a~~~~ 106 (115)
T 2cpx_A 96 ILVIEFGKNKK 106 (115)
T ss_dssp BCEEEECCCCS
T ss_pred EEEEEEccCCC
Confidence 99999998886
No 103
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.84 E-value=1.3e-20 Score=124.88 Aligned_cols=79 Identities=15% Similarity=0.194 Sum_probs=72.3
Q ss_pred CCCCCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEc-----CCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCe
Q 043011 16 EDERSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAA-----DDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANR 90 (133)
Q Consensus 16 ~~~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~-----~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr 90 (133)
...+.++|||+||+++ +++++|+++|++|| |.+|.+. ++++|||||+|.+.++|++|+ .|||.. +.|+
T Consensus 11 ~~~~~~~l~V~nLp~~--~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~---~~g~ 83 (103)
T 2dng_A 11 PTEPPYTAYVGNLPFN--TVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGAL---LGDR 83 (103)
T ss_dssp CSSSCEEEEEESCCTT--CCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCE---ETTE
T ss_pred CCCCCeEEEEeCCCCC--CCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCe---ECCe
Confidence 3467899999999999 99999999999997 9999884 345899999999999999999 899999 9999
Q ss_pred eEEEEeeecCC
Q 043011 91 FLHISYSVLED 101 (133)
Q Consensus 91 ~l~V~~a~~~~ 101 (133)
.|+|+|+.++.
T Consensus 84 ~l~V~~a~~~~ 94 (103)
T 2dng_A 84 SLRVDIAEGRK 94 (103)
T ss_dssp ECEEEECCCCC
T ss_pred EEEEEEecCCC
Confidence 99999998876
No 104
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.84 E-value=3.6e-21 Score=134.30 Aligned_cols=88 Identities=23% Similarity=0.363 Sum_probs=77.7
Q ss_pred CCCCCCCCCCCCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEc-----CCCCCeEEEEECCHHHHHHHHHHhcCCC
Q 043011 9 FRRPKAGEDERSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAA-----DDSGARVIVSYFDEGSAQAAFNSLHSRP 83 (133)
Q Consensus 9 f~~p~~~~~~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~-----~~~kg~afV~f~~~~~A~~A~~~l~g~~ 83 (133)
+.+|. ....+.++|||+||+++ +|+++|+++|++||+|.+|.+. ++++|||||+|.+.++|++|++.|||..
T Consensus 37 ~~~~~-~~~~~~~~l~V~nLp~~--~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~ 113 (135)
T 2lea_A 37 YGRPP-PDVEGMTSLKVDNLTYR--TSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAV 113 (135)
T ss_dssp SCCSC-SSGGGCCCEEEECCCSS--CHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCC
T ss_pred cCCCC-CCCCCCCEEEEeCCCCC--CCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCE
Confidence 44443 33456789999999999 9999999999999999999984 3578999999999999999999999999
Q ss_pred CCCCCCeeEEEEeeecCCC
Q 043011 84 CPDLANRFLHISYSVLEDS 102 (133)
Q Consensus 84 ~~~l~gr~l~V~~a~~~~~ 102 (133)
+.|+.|+|+|+.++.+
T Consensus 114 ---i~g~~l~V~~a~~~~~ 129 (135)
T 2lea_A 114 ---LDGRELRVQMARYGRP 129 (135)
T ss_dssp ---SSSSCCEEEECCCCCC
T ss_pred ---ECCEEEEEEECCCCCC
Confidence 9999999999998764
No 105
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.84 E-value=4.4e-21 Score=132.69 Aligned_cols=80 Identities=6% Similarity=0.178 Sum_probs=73.0
Q ss_pred CCCCCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeE--EEEc-----CCCCCeEEEEECCHHHHHHHHHHhcCC----CC
Q 043011 16 EDERSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKG--IYAA-----DDSGARVIVSYFDEGSAQAAFNSLHSR----PC 84 (133)
Q Consensus 16 ~~~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~--v~~~-----~~~kg~afV~f~~~~~A~~A~~~l~g~----~~ 84 (133)
...++++|||+||+++ +|+++|+++|++||.|.. |++. +++||||||+|.+. +|.+|+..|||. .
T Consensus 19 ~~~~~~~lfV~nL~~~--~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~- 94 (131)
T 2m2b_A 19 SENANDTIILRNLNPH--STMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLT- 94 (131)
T ss_dssp CSCCCCEEEECSCCTT--CCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCC-
T ss_pred CCCCCCEEEEeCCCCC--CCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCcc-
Confidence 4567899999999999 999999999999999966 7764 45789999999999 999999999999 8
Q ss_pred CCCCCeeEEEEeeecCC
Q 043011 85 PDLANRFLHISYSVLED 101 (133)
Q Consensus 85 ~~l~gr~l~V~~a~~~~ 101 (133)
+.||.|+|+|+.++.
T Consensus 95 --~~gr~l~V~~a~~~~ 109 (131)
T 2m2b_A 95 --IDGKTINVEFAKGSK 109 (131)
T ss_dssp --GGGCCCCCEECCCSC
T ss_pred --CCCEEEEEEECCCCC
Confidence 999999999998876
No 106
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=1.3e-20 Score=126.78 Aligned_cols=81 Identities=21% Similarity=0.203 Sum_probs=73.8
Q ss_pred CCCCCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEcC----CCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCee
Q 043011 16 EDERSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAAD----DSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRF 91 (133)
Q Consensus 16 ~~~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~~----~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~ 91 (133)
...++++|||+||+++ +++++|+++|++||+|.+|.+.. +++|||||+|.+.++|++|++.|||.. +.|+.
T Consensus 11 ~~~~~~~l~V~nlp~~--~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~---~~g~~ 85 (114)
T 2do0_A 11 AGRLGSTVFVANLDYK--VGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQL---LFDRP 85 (114)
T ss_dssp CCCCCSCEEEESCCTT--CCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCE---ETTEE
T ss_pred cCCCCCEEEEeCCCCC--CCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCE---eCCCE
Confidence 3456899999999999 99999999999999999998743 357999999999999999999999999 99999
Q ss_pred EEEEeeecCC
Q 043011 92 LHISYSVLED 101 (133)
Q Consensus 92 l~V~~a~~~~ 101 (133)
|+|+|+....
T Consensus 86 l~v~~a~~~~ 95 (114)
T 2do0_A 86 MHVKMDERAL 95 (114)
T ss_dssp CEEEECSCCC
T ss_pred EEEEEcccCC
Confidence 9999997665
No 107
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.84 E-value=8.8e-21 Score=126.60 Aligned_cols=81 Identities=16% Similarity=0.214 Sum_probs=73.1
Q ss_pred CCCCCCeEEEeccCCCCCC------CHHHHHHHhhcCCCeeEEEEc---CCCCCeEEEEECCHHHHHHHHHHhcCCCCCC
Q 043011 16 EDERSPNLFVANCGPAVGV------SYEAIGSVFSAFGDVKGIYAA---DDSGARVIVSYFDEGSAQAAFNSLHSRPCPD 86 (133)
Q Consensus 16 ~~~~~~~L~V~Nl~~~~~v------te~~L~~~F~~fG~V~~v~~~---~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~ 86 (133)
....+++|||+||++. + ++++|+++|++||+|.+|.+. ++++|||||+|.+.++|++|+..|||..
T Consensus 11 ~~~~~~~l~V~nLp~~--~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~--- 85 (105)
T 2nlw_A 11 ADGIDSVIVVDNVPQV--GPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYK--- 85 (105)
T ss_dssp CCSCCSEEEEESCCCC--CTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEE---
T ss_pred CCCCCCEEEEeCCCcc--hhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcc---
Confidence 4455789999999999 8 789999999999999999985 3568999999999999999999999999
Q ss_pred CCCe-eEEEEeeecCC
Q 043011 87 LANR-FLHISYSVLED 101 (133)
Q Consensus 87 l~gr-~l~V~~a~~~~ 101 (133)
+.|+ +|+|+++...+
T Consensus 86 ~~g~~~l~V~~a~~~~ 101 (105)
T 2nlw_A 86 LDKQHTFRVNLFTDFD 101 (105)
T ss_dssp CSTTCEEEEECSCCCC
T ss_pred cCCCceEEEEEcchHh
Confidence 9999 99999987554
No 108
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1e-20 Score=126.29 Aligned_cols=80 Identities=15% Similarity=0.096 Sum_probs=73.5
Q ss_pred CCCCCeEEEeccCCCCCCCHHHHHHHhhcCCC-eeEEEEc------CCCCCeEEEEECCHHHHHHHHHHhc--CCCCCCC
Q 043011 17 DERSPNLFVANCGPAVGVSYEAIGSVFSAFGD-VKGIYAA------DDSGARVIVSYFDEGSAQAAFNSLH--SRPCPDL 87 (133)
Q Consensus 17 ~~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~-V~~v~~~------~~~kg~afV~f~~~~~A~~A~~~l~--g~~~~~l 87 (133)
..+.++|||+||+++ +|+++|+++|++||+ |.++.+. +.++|||||+|.+.++|++|++.|| +.. +
T Consensus 5 s~~~~~l~V~nLp~~--~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~---~ 79 (109)
T 2dis_A 5 SSGNCRLFIGGIPKM--KKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQ---L 79 (109)
T ss_dssp CCCSEEEEEECCCTT--SCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSC---B
T ss_pred ccCCCEEEEeCCCCc--CCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCce---e
Confidence 356789999999999 999999999999998 9999985 2579999999999999999999996 588 9
Q ss_pred CCeeEEEEeeecCC
Q 043011 88 ANRFLHISYSVLED 101 (133)
Q Consensus 88 ~gr~l~V~~a~~~~ 101 (133)
.|+.|+|+|+.++.
T Consensus 80 ~g~~l~V~~a~~~~ 93 (109)
T 2dis_A 80 WGHQIAVDWAEPEI 93 (109)
T ss_dssp TTBCCEEEESCSSC
T ss_pred cCCeEEEEEcCCCC
Confidence 99999999999887
No 109
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.84 E-value=3.3e-21 Score=126.02 Aligned_cols=81 Identities=11% Similarity=0.183 Sum_probs=74.8
Q ss_pred CCCCCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEcCCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCeeEEEE
Q 043011 16 EDERSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAADDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRFLHIS 95 (133)
Q Consensus 16 ~~~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~l~V~ 95 (133)
...+.++|||+||+++ +++++|+++|++||+|..+...+.++|||||+|.+.++|++|++.|||.. +.|+.|+|+
T Consensus 12 ~~~~~~~l~V~nL~~~--~t~~~l~~~F~~~g~v~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~---~~g~~l~v~ 86 (96)
T 1fjc_A 12 KVRAARTLLAKNLSFN--ITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAE---IDGRSVSLY 86 (96)
T ss_dssp TTTGGGEEEEESCCSS--CCHHHHHHHHCSEEEECCEEETTEEEEEEEEEESSHHHHHHHHHHTTEEE---ETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCC--CCHHHHHHHHhhCCcEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCE---ECCeEEEEE
Confidence 4567899999999999 99999999999999998885556789999999999999999999999999 999999999
Q ss_pred eeecCC
Q 043011 96 YSVLED 101 (133)
Q Consensus 96 ~a~~~~ 101 (133)
|+.++.
T Consensus 87 ~a~~~~ 92 (96)
T 1fjc_A 87 YTGEKG 92 (96)
T ss_dssp ECSSSC
T ss_pred EcCCCC
Confidence 998775
No 110
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.84 E-value=1.8e-20 Score=130.20 Aligned_cols=81 Identities=20% Similarity=0.265 Sum_probs=74.8
Q ss_pred CCCCCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEc-----CCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCe
Q 043011 16 EDERSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAA-----DDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANR 90 (133)
Q Consensus 16 ~~~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~-----~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr 90 (133)
...+.++|||+||+.+ +++++|+++|++||+|.+|.+. ++++|||||+|.+.++|++|++.|||.. +.|+
T Consensus 38 ~~~~~~~l~V~nLp~~--~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~---~~g~ 112 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTT--VDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFN---ILNK 112 (139)
T ss_dssp CTTTTSEEEEESCSTT--CCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEE---CSSC
T ss_pred CCCCCCEEEEeCCCCC--CCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCE---ECCe
Confidence 4556799999999999 9999999999999999999884 2358999999999999999999999999 9999
Q ss_pred eEEEEeeecCC
Q 043011 91 FLHISYSVLED 101 (133)
Q Consensus 91 ~l~V~~a~~~~ 101 (133)
.|+|+|+.++.
T Consensus 113 ~l~v~~a~~~~ 123 (139)
T 1u6f_A 113 RLKVALAASGH 123 (139)
T ss_dssp EEEEEESSCCC
T ss_pred EEEEEECCCCC
Confidence 99999998876
No 111
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.84 E-value=5.3e-21 Score=124.66 Aligned_cols=79 Identities=19% Similarity=0.192 Sum_probs=72.2
Q ss_pred CCCCCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEcC----CCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCee
Q 043011 16 EDERSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAAD----DSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRF 91 (133)
Q Consensus 16 ~~~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~~----~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~ 91 (133)
...+.++|||+||+++ +++++|+++|++||+|.+|.+.. .++|||||+|.+.++|++|++.|||.. +.|+.
T Consensus 12 ~~~~~~~l~v~nlp~~--~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~---~~g~~ 86 (95)
T 2ywk_A 12 QEEADRTVFVGNLEAR--VREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIR---LYGRP 86 (95)
T ss_dssp CTTGGGEEEEECCCTT--CCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCE---ETTEE
T ss_pred CCCCCCEEEEECCCCC--CCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCE---ECCCE
Confidence 3457899999999999 99999999999999999998853 357999999999999999999999999 99999
Q ss_pred EEEEeeec
Q 043011 92 LHISYSVL 99 (133)
Q Consensus 92 l~V~~a~~ 99 (133)
|+|+|++.
T Consensus 87 l~V~~a~~ 94 (95)
T 2ywk_A 87 INVSGPSS 94 (95)
T ss_dssp CEEECCCC
T ss_pred EEEEEcCC
Confidence 99999863
No 112
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=7.8e-21 Score=128.02 Aligned_cols=80 Identities=16% Similarity=0.235 Sum_probs=73.6
Q ss_pred CCCCCeEEEeccCCCCCCCHHHHH---HHhhcCCCeeEEEEcC--------CCCCeEEEEECCHHHHHHHHHHhcCCCCC
Q 043011 17 DERSPNLFVANCGPAVGVSYEAIG---SVFSAFGDVKGIYAAD--------DSGARVIVSYFDEGSAQAAFNSLHSRPCP 85 (133)
Q Consensus 17 ~~~~~~L~V~Nl~~~~~vte~~L~---~~F~~fG~V~~v~~~~--------~~kg~afV~f~~~~~A~~A~~~l~g~~~~ 85 (133)
..+.++|||+||+++ +++++|+ ++|++||+|.+|.+.. .++|||||+|.+.++|++|++.|||..
T Consensus 12 ~~~~~~l~V~nLp~~--~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~-- 87 (111)
T 2cpi_A 12 VVQKNLVFVVGLSQR--LADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVV-- 87 (111)
T ss_dssp CCCSSCEEEEEECTT--TCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEE--
T ss_pred ccCCCEEEEECCCCC--CCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCE--
Confidence 456889999999999 9999999 9999999999999842 345899999999999999999999999
Q ss_pred CCCCeeEEEEeeecCC
Q 043011 86 DLANRFLHISYSVLED 101 (133)
Q Consensus 86 ~l~gr~l~V~~a~~~~ 101 (133)
+.|+.|+|+|+.++.
T Consensus 88 -~~gr~l~V~~a~~k~ 102 (111)
T 2cpi_A 88 -VDGRTLKASLGTTKY 102 (111)
T ss_dssp -ETTEEEEEESCCCCS
T ss_pred -ECCEEEEEEeccccc
Confidence 999999999998886
No 113
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.84 E-value=2.6e-20 Score=131.78 Aligned_cols=82 Identities=22% Similarity=0.332 Sum_probs=75.5
Q ss_pred CCCCCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEc-----CCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCe
Q 043011 16 EDERSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAA-----DDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANR 90 (133)
Q Consensus 16 ~~~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~-----~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr 90 (133)
...+..+|||+||+++ +++++|+++|++||+|.++.+. +.++|||||+|.+.++|++|++.|||.. +.|+
T Consensus 66 ~~~~~~~l~v~nl~~~--~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~---~~g~ 140 (158)
T 2kn4_A 66 DVEGMTSLKVDNLTYR--TSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAV---LDGR 140 (158)
T ss_dssp CCCBCCEEEEESCCTT--CCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEE---SSSS
T ss_pred CCCCCCEEEEeCCCCC--CCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCE---ECCe
Confidence 3456899999999999 9999999999999999999984 3478999999999999999999999999 9999
Q ss_pred eEEEEeeecCCC
Q 043011 91 FLHISYSVLEDS 102 (133)
Q Consensus 91 ~l~V~~a~~~~~ 102 (133)
.|+|+|+.++.+
T Consensus 141 ~l~v~~a~~~~~ 152 (158)
T 2kn4_A 141 ELRVQMARYGRP 152 (158)
T ss_dssp EEEEEEECCSSC
T ss_pred EEEEEECCCCCC
Confidence 999999998763
No 114
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=4.3e-21 Score=126.13 Aligned_cols=81 Identities=14% Similarity=0.340 Sum_probs=73.9
Q ss_pred CCCCCCeEEEeccCCCCCCCHHHHHHHhhcCCCee-EEEEc-----CCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCC
Q 043011 16 EDERSPNLFVANCGPAVGVSYEAIGSVFSAFGDVK-GIYAA-----DDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLAN 89 (133)
Q Consensus 16 ~~~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~-~v~~~-----~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~g 89 (133)
...++++|||+||+++ +++++|+++|++||+|. ++.+. +.++|||||+|.+.++|++|++.|||.. +.|
T Consensus 5 ~~~~~~~l~V~nLp~~--~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~---~~g 79 (99)
T 2div_A 5 SSGMAASLWMGDLEPY--MDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKP---LPG 79 (99)
T ss_dssp CCSSSSEEEECSCCTT--CCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSE---ESS
T ss_pred CCCCccEEEEeCCCCC--CCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCc---cCC
Confidence 3467899999999999 99999999999999999 99874 3467999999999999999999999999 999
Q ss_pred ee----EEEEeeecCC
Q 043011 90 RF----LHISYSVLED 101 (133)
Q Consensus 90 r~----l~V~~a~~~~ 101 (133)
+. |+|+|+.+..
T Consensus 80 ~~~~~~l~v~~a~~~~ 95 (99)
T 2div_A 80 ATPAKRFKLNYATYSG 95 (99)
T ss_dssp CSSCEECCEEETTCCS
T ss_pred CCcceeEEEeecCCCC
Confidence 99 9999998765
No 115
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=4.7e-21 Score=129.16 Aligned_cols=77 Identities=18% Similarity=0.227 Sum_probs=72.0
Q ss_pred CCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEc-----CCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCeeEE
Q 043011 19 RSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAA-----DDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRFLH 93 (133)
Q Consensus 19 ~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~-----~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~l~ 93 (133)
..++|||+||+.+ +++++|+++|++||+|.+|.+. +.++|||||+|.+.++|++|+ .|||.. +.|+.|+
T Consensus 24 ~~~~l~V~nlp~~--~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~---~~g~~l~ 97 (114)
T 2cq4_A 24 DARTVFCMQLAAR--IRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQR---LLGVPII 97 (114)
T ss_dssp HHTEEEEESCCTT--CCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEE---ETTEEEE
T ss_pred CCCEEEEeCCCCC--CCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCE---eCCeEEE
Confidence 4689999999999 9999999999999999999985 457899999999999999999 999999 9999999
Q ss_pred EEeeecCC
Q 043011 94 ISYSVLED 101 (133)
Q Consensus 94 V~~a~~~~ 101 (133)
|+|+.++.
T Consensus 98 V~~a~~~~ 105 (114)
T 2cq4_A 98 VQASQAEK 105 (114)
T ss_dssp EEEHHHHH
T ss_pred EEecCCCc
Confidence 99998765
No 116
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.84 E-value=2.3e-20 Score=127.62 Aligned_cols=81 Identities=23% Similarity=0.236 Sum_probs=74.9
Q ss_pred CCCCCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEcC----CCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCee
Q 043011 16 EDERSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAAD----DSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRF 91 (133)
Q Consensus 16 ~~~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~~----~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~ 91 (133)
...++++|||+||+++ +++++|+++|++||+|.+|.+.. +++|||||+|.+.++|++|++.|||.. +.|+.
T Consensus 31 ~~~~~~~l~V~nlp~~--~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~---~~g~~ 105 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFG--VSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVP---LDGRP 105 (124)
T ss_dssp CCSSCEEEEEESCCSS--CCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEE---SSSCE
T ss_pred CCCCCCEEEEeCCCCC--CCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCE---ECCcE
Confidence 4556789999999999 99999999999999999999843 478999999999999999999999999 99999
Q ss_pred EEEEeeecCC
Q 043011 92 LHISYSVLED 101 (133)
Q Consensus 92 l~V~~a~~~~ 101 (133)
|+|+||.+..
T Consensus 106 l~V~~a~~~~ 115 (124)
T 2kt5_A 106 MDIQLVASQI 115 (124)
T ss_dssp EEEEEECCTT
T ss_pred EEEEEeCCCC
Confidence 9999998876
No 117
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=1.6e-20 Score=123.90 Aligned_cols=81 Identities=17% Similarity=0.168 Sum_probs=71.7
Q ss_pred CCCCCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEE-cCCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCeeEEE
Q 043011 16 EDERSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYA-ADDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRFLHI 94 (133)
Q Consensus 16 ~~~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~-~~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~l~V 94 (133)
...++++|||+||+++ +++++|+++|++||+|.-+.. .++++|||||+|.+.++|++|++.|||.. +.|+.|+|
T Consensus 11 ~~~~~~~l~V~nLp~~--~t~~~l~~~F~~~g~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~---~~g~~l~v 85 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYS--ATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKRE---IEGRAIRL 85 (101)
T ss_dssp CSCCCSEEEEESCCTT--CCHHHHHHHCSSCSEEECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEE---ETTEEEEE
T ss_pred CCCCCCEEEEeCCCCC--CCHHHHHHHHHhCCEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCE---eCCeEEEE
Confidence 4457899999999999 999999999999999832221 24578999999999999999999999999 99999999
Q ss_pred EeeecCC
Q 043011 95 SYSVLED 101 (133)
Q Consensus 95 ~~a~~~~ 101 (133)
+|+.++.
T Consensus 86 ~~a~~~~ 92 (101)
T 2fc9_A 86 ELQGPRG 92 (101)
T ss_dssp EECSSCC
T ss_pred EEcCCCC
Confidence 9998876
No 118
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.84 E-value=1.4e-20 Score=125.30 Aligned_cols=78 Identities=24% Similarity=0.273 Sum_probs=72.2
Q ss_pred CCCCCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEc----CCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCee
Q 043011 16 EDERSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAA----DDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRF 91 (133)
Q Consensus 16 ~~~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~----~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~ 91 (133)
...+.++|||+||++. +++++|+++|++||+|.+|.+. ++++|||||+|.+.++|++|++.|||.. +.|+.
T Consensus 25 ~~~~~~~l~V~nlp~~--~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~---~~g~~ 99 (107)
T 3ulh_A 25 GVETGGKLLVSNLDFG--VSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVP---LDGRP 99 (107)
T ss_dssp CCCCSEEEEEESCCTT--CCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCE---ETTEE
T ss_pred CCCCCCEEEEeCCCCC--CCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCE---eCCcE
Confidence 4567899999999999 9999999999999999999874 3468999999999999999999999999 99999
Q ss_pred EEEEeee
Q 043011 92 LHISYSV 98 (133)
Q Consensus 92 l~V~~a~ 98 (133)
|+|+|+.
T Consensus 100 l~V~~a~ 106 (107)
T 3ulh_A 100 MNIQLVT 106 (107)
T ss_dssp CEEEEEC
T ss_pred EEEEEeC
Confidence 9999985
No 119
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=3.7e-21 Score=123.18 Aligned_cols=77 Identities=14% Similarity=0.221 Sum_probs=70.3
Q ss_pred CCCCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEc-----CCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCee
Q 043011 17 DERSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAA-----DDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRF 91 (133)
Q Consensus 17 ~~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~-----~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~ 91 (133)
..++++|||+||+++ +++++|+++|++||+|.++.+. +.++|||||+|.+.++|++|++.|||.. +.|+.
T Consensus 2 ~~~~~~l~v~nlp~~--~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~---~~g~~ 76 (85)
T 1x4e_A 2 SSGSSGLYIRGLQPG--TTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASG---VQAQM 76 (85)
T ss_dssp CCCCCEEEEESCCTT--CCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHT---CCEES
T ss_pred CCCCcEEEEeCCCCC--CCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCe---EeeEE
Confidence 357899999999999 9999999999999999999874 3458999999999999999999999999 99999
Q ss_pred EEEEeee
Q 043011 92 LHISYSV 98 (133)
Q Consensus 92 l~V~~a~ 98 (133)
|++++++
T Consensus 77 ~~~~~~~ 83 (85)
T 1x4e_A 77 AKQSGPS 83 (85)
T ss_dssp CCSSCCC
T ss_pred EeecCCC
Confidence 9887754
No 120
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.83 E-value=5.5e-21 Score=126.47 Aligned_cols=79 Identities=18% Similarity=0.196 Sum_probs=69.2
Q ss_pred CCCCCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEcC------CCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCC
Q 043011 16 EDERSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAAD------DSGARVIVSYFDEGSAQAAFNSLHSRPCPDLAN 89 (133)
Q Consensus 16 ~~~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~~------~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~g 89 (133)
...+.++|||+||+.+ +++++|+++|++|| |.+|.+.. +++|||||+|.+.++|++|+ .|||.. +.|
T Consensus 15 ~~~~~~~l~V~nLp~~--~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~---~~g 87 (100)
T 2j76_E 15 PKSPPYTAFLGNLPYD--VTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEES---LGN 87 (100)
T ss_dssp -----CEEEESCCSSC--CSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCC---BTT
T ss_pred CCCCCcEEEEeCCCCC--CCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCE---ECC
Confidence 4567899999999999 99999999999999 99999843 35899999999999999999 999999 999
Q ss_pred eeEEEEeeecCC
Q 043011 90 RFLHISYSVLED 101 (133)
Q Consensus 90 r~l~V~~a~~~~ 101 (133)
+.|+|+++.+++
T Consensus 88 ~~l~V~~a~~~~ 99 (100)
T 2j76_E 88 RRIRVDVADQAQ 99 (100)
T ss_dssp BCCCCEECCCSC
T ss_pred eEEEEEeccCCC
Confidence 999999998764
No 121
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.83 E-value=2.1e-20 Score=143.22 Aligned_cols=110 Identities=13% Similarity=0.102 Sum_probs=94.6
Q ss_pred CCCCeEEEeccCCCCCCCHHHHHHHhhcCC-CeeEEEEcC----CCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCeeE
Q 043011 18 ERSPNLFVANCGPAVGVSYEAIGSVFSAFG-DVKGIYAAD----DSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRFL 92 (133)
Q Consensus 18 ~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG-~V~~v~~~~----~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~l 92 (133)
.+.++|||+||+++ +++++|+++|++|| +|.++.+.. .++|||||+|.+.++|.+|+..|||.. +.|+.|
T Consensus 115 ~~~~~l~v~nlp~~--~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~---~~g~~l 189 (292)
T 2ghp_A 115 LTECTLWMTNFPPS--YTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLK---IEGYTL 189 (292)
T ss_dssp CCSCEEEEECCCTT--CCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCE---ETTEEC
T ss_pred CCCCEEEEECCCCC--CCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCE---eCCcEE
Confidence 35789999999999 99999999999999 999998853 478999999999999999999999999 999999
Q ss_pred EEEeeecCCCC----CCCCCcceeEeeecCCC-CCchhhhhhhcc
Q 043011 93 HISYSVLEDSP----ATRHITSSVPVSLVASE-LNIPGLHSCFMT 132 (133)
Q Consensus 93 ~V~~a~~~~~~----~~~~~~~~l~v~nl~~~-~~~~~l~~~f~~ 132 (133)
.|.|+.++... .......+|+|+|||.. ++..+|+++|..
T Consensus 190 ~v~~a~~~~~~~~~~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~ 234 (292)
T 2ghp_A 190 VTKVSNPLEKSKRTDSATLEGREIMIRNLSTELLDENLLRESFEG 234 (292)
T ss_dssp EEEECCCC---------CCTTTEEEEEEECTTTCCHHHHHHHHGG
T ss_pred EEEECCCCcccccccccCCCCceEEEECCCcccCCHHHHHHHHhc
Confidence 99999887621 12334567999999999 999999999974
No 122
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.83 E-value=1.3e-20 Score=121.36 Aligned_cols=77 Identities=13% Similarity=0.239 Sum_probs=71.0
Q ss_pred CCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEc-----CCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCeeEE
Q 043011 19 RSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAA-----DDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRFLH 93 (133)
Q Consensus 19 ~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~-----~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~l~ 93 (133)
..++|||+||+++ +++++|+++|++||+|.++.+. ++++|||||+|.+.++|++|+ .|||.. +.|+.|+
T Consensus 5 ~~~~l~V~nlp~~--~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~---~~g~~l~ 78 (89)
T 3ucg_A 5 DARSIYVGNVDYG--ATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESL---FRGRQIK 78 (89)
T ss_dssp HHTEEEEESCCTT--CCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCE---ETTEECE
T ss_pred cCCEEEEeCCCCC--CCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCE---ECCcEEE
Confidence 4689999999999 9999999999999999999874 346899999999999999999 999999 9999999
Q ss_pred EEeeecCC
Q 043011 94 ISYSVLED 101 (133)
Q Consensus 94 V~~a~~~~ 101 (133)
|++++++.
T Consensus 79 V~~a~~~~ 86 (89)
T 3ucg_A 79 VIPKRTNR 86 (89)
T ss_dssp EEETTTTS
T ss_pred EEEccCCC
Confidence 99997764
No 123
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.83 E-value=3.4e-20 Score=128.31 Aligned_cols=77 Identities=18% Similarity=0.309 Sum_probs=70.9
Q ss_pred CCCCCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEc-----CCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCe
Q 043011 16 EDERSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAA-----DDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANR 90 (133)
Q Consensus 16 ~~~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~-----~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr 90 (133)
...+.++|||+||+++ +++++|+++|++||+|.++.+. ++++|||||+|.+.++|++|++.|||.. +.|+
T Consensus 59 ~~~~~~~l~v~nlp~~--~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~---~~g~ 133 (140)
T 2ku7_A 59 SATTKRVLYVGGLAEE--VDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESE---LFGR 133 (140)
T ss_dssp SCSSCCEEEEECCCTT--CCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEE---ETTE
T ss_pred CCCCCcEEEEEeCCCC--CCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCE---ECCE
Confidence 4557899999999999 9999999999999999999984 3468999999999999999999999999 9999
Q ss_pred eEEEEee
Q 043011 91 FLHISYS 97 (133)
Q Consensus 91 ~l~V~~a 97 (133)
.|+|+||
T Consensus 134 ~l~v~~A 140 (140)
T 2ku7_A 134 TIRVNLA 140 (140)
T ss_dssp EEEEEC-
T ss_pred EEEEEeC
Confidence 9999986
No 124
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.83 E-value=2.8e-20 Score=128.81 Aligned_cols=79 Identities=18% Similarity=0.145 Sum_probs=70.8
Q ss_pred CCCCCe--EEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEcCCCCCe-EEEEECCHHHHHHHHHHhcCCCCCCCCC--ee
Q 043011 17 DERSPN--LFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAADDSGAR-VIVSYFDEGSAQAAFNSLHSRPCPDLAN--RF 91 (133)
Q Consensus 17 ~~~~~~--L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~~~~kg~-afV~f~~~~~A~~A~~~l~g~~~~~l~g--r~ 91 (133)
.+|++. |||+||++. +|+++|+++|++||+|.+|++..+ .|| |||+|.+.++|+.|+++|||+. +.| +.
T Consensus 20 ~~ps~vl~l~V~NL~~~--vt~~~L~~~Fs~yG~V~~v~i~~~-~Gf~aFVef~~~~~A~~A~~~LnG~~---i~g~~~~ 93 (124)
T 2e5i_A 20 SGGNKVLLLSIQNPLYP--ITVDVLYTVCNPVGKVQRIVIFKR-NGIQAMVEFESVLCAQKAKAALNGAD---IYAGCCT 93 (124)
T ss_dssp CCCCSEEEEEEESCCSC--CCHHHHHHHHTTTSCEEEEEEEES-SSEEEEEEESSHHHHHHHHHHHTTCC---CBTTBSE
T ss_pred CCCCcEEEEEEcCcCCC--CCHHHHHHHHHhcCCEEEEEEEeC-CCCEEEEEECCHHHHHHHHHHhCCCE---ecCCCeE
Confidence 345665 579999999 999999999999999999998554 596 9999999999999999999999 987 69
Q ss_pred EEEEeeecCC
Q 043011 92 LHISYSVLED 101 (133)
Q Consensus 92 l~V~~a~~~~ 101 (133)
|+|+||+++.
T Consensus 94 l~V~~Ak~~~ 103 (124)
T 2e5i_A 94 LKIEYARPTR 103 (124)
T ss_dssp EEEECCSCSC
T ss_pred EEEEEecCCc
Confidence 9999999886
No 125
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.83 E-value=4.5e-20 Score=123.74 Aligned_cols=79 Identities=25% Similarity=0.354 Sum_probs=71.9
Q ss_pred CCCCCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEcCCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCeeEEEE
Q 043011 16 EDERSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAADDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRFLHIS 95 (133)
Q Consensus 16 ~~~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~l~V~ 95 (133)
...++++|||+||+++. +++++|+++|++||+|.+|.+ ++|||||+|.+.++|++|++.|||.. +.|+.|+|+
T Consensus 23 ~~~~~~~l~V~nl~~~~-~t~~~l~~~F~~~G~v~~v~i---~~g~afV~f~~~~~A~~A~~~l~g~~---~~g~~l~V~ 95 (110)
T 1wf1_A 23 PKSINSRVFIGNLNTAL-VKKSDVETIFSKYGRVAGCSV---HKGYAFVQYSNERHARAAVLGENGRV---LAGQTLDIN 95 (110)
T ss_dssp CTTCSSEEEECSCCCSS-CCHHHHHHHHGGGSCCSEEEE---ETTEEEEECSSSHHHHHHHHHHTTCE---ETTEECCEE
T ss_pred CCCCCcEEEEeCCCccc-CCHHHHHHHHHhCCCeEEEEE---eCCEEEEEECCHHHHHHHHHHcCCCE---ECCeEEEEE
Confidence 34456899999999752 699999999999999999999 78999999999999999999999999 999999999
Q ss_pred eeecCC
Q 043011 96 YSVLED 101 (133)
Q Consensus 96 ~a~~~~ 101 (133)
|+.++.
T Consensus 96 ~a~~~~ 101 (110)
T 1wf1_A 96 MAGEPK 101 (110)
T ss_dssp ESCCCC
T ss_pred ECCCCC
Confidence 998655
No 126
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=1.6e-20 Score=125.71 Aligned_cols=77 Identities=13% Similarity=0.128 Sum_probs=71.1
Q ss_pred CCCCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEc----CCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCeeE
Q 043011 17 DERSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAA----DDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRFL 92 (133)
Q Consensus 17 ~~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~----~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~l 92 (133)
..+.++|||+|||++ +|+++|+++|++||+|.+|.+. +.++|||||+|.+.++|++|+. +||.. +.|+.|
T Consensus 8 ~~~~~~lfV~~Lp~~--~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~---~~gr~l 81 (103)
T 1s79_A 8 DVKNRSVYIKGFPTD--ATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQK---YKETDL 81 (103)
T ss_dssp CSGGGCEEEECCCTT--CCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCC---CTTTTC
T ss_pred cCCCCEEEEECCCCC--CCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCE---ECCEEE
Confidence 346789999999999 9999999999999999999985 3478999999999999999999 99999 999999
Q ss_pred EEEeeec
Q 043011 93 HISYSVL 99 (133)
Q Consensus 93 ~V~~a~~ 99 (133)
.|.++..
T Consensus 82 ~V~~~~~ 88 (103)
T 1s79_A 82 LILFKDD 88 (103)
T ss_dssp EEEEHHH
T ss_pred EEEEchH
Confidence 9998765
No 127
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=5.6e-20 Score=120.11 Aligned_cols=79 Identities=27% Similarity=0.362 Sum_probs=71.8
Q ss_pred CCCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEE-Ec-CCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCeeEEEE
Q 043011 18 ERSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIY-AA-DDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRFLHIS 95 (133)
Q Consensus 18 ~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~-~~-~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~l~V~ 95 (133)
..+++|||+||+++ +++++|+++|++||+|.+++ +. .+..|.|||+|.+.++|++|+..|||.. +.|+.|+|+
T Consensus 13 ~~~~~l~V~nlp~~--~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~---~~g~~l~V~ 87 (96)
T 2e44_A 13 QRIRKLQIRNIPPH--LQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQ---LENFTLKVA 87 (96)
T ss_dssp CSCCCEEEEEECSS--SCHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCB---CSSCBCEEE
T ss_pred CCCCEEEEEcCCCC--CCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCE---ECCcEEEEE
Confidence 45789999999999 99999999999999999994 54 3456679999999999999999999999 999999999
Q ss_pred eeecCC
Q 043011 96 YSVLED 101 (133)
Q Consensus 96 ~a~~~~ 101 (133)
|+.+++
T Consensus 88 ~a~~~~ 93 (96)
T 2e44_A 88 YIPDEM 93 (96)
T ss_dssp ECCCCC
T ss_pred EcCccc
Confidence 998875
No 128
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.83 E-value=1.4e-20 Score=121.77 Aligned_cols=77 Identities=17% Similarity=0.286 Sum_probs=71.8
Q ss_pred CCCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEcCCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCeeEEEEee
Q 043011 18 ERSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAADDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRFLHISYS 97 (133)
Q Consensus 18 ~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~l~V~~a 97 (133)
..+++|||+|||++ +++++|+++|++| +|.++.+ .+++|||||+|.+.++|++|++.|||.. +.|++|+|+|+
T Consensus 3 ~~~~~l~V~nLp~~--~t~~~l~~~F~~~-~v~~~~i-~~~~g~afV~f~~~~~a~~Ai~~l~g~~---~~g~~l~V~~a 75 (88)
T 1wg1_A 3 SGSSGILVKNLPQD--SNCQEVHDLLKDY-DLKYCYV-DRNKRTAFVTLLNGEQAQNAIQMFHQYS---FRGKDLIVQLQ 75 (88)
T ss_dssp CCCCCEEEESCCSS--CCHHHHHHHTCSS-CCCCEEE-EGGGTEEEECCSCHHHHHHHHHHHTTEE---ETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCC--CCHHHHHHHHhhC-CeEEEEE-eCCCcEEEEEECCHHHHHHHHHHhCCCe---ECCcEEEEEEc
Confidence 46789999999999 9999999999999 9999988 4789999999999999999999999999 99999999998
Q ss_pred ecCC
Q 043011 98 VLED 101 (133)
Q Consensus 98 ~~~~ 101 (133)
....
T Consensus 76 ~~~~ 79 (88)
T 1wg1_A 76 PTDA 79 (88)
T ss_dssp CCCC
T ss_pred CCCc
Confidence 6553
No 129
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.83 E-value=3.2e-20 Score=124.86 Aligned_cols=81 Identities=14% Similarity=0.235 Sum_probs=70.1
Q ss_pred CCCCCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEc-----CCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCe
Q 043011 16 EDERSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAA-----DDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANR 90 (133)
Q Consensus 16 ~~~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~-----~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr 90 (133)
...+.++|||+||+.+ +++++|+++|++||+|.+|.+. +.++|||||+|.+.++|++|++.+ |.. +.|+
T Consensus 21 ~~~~~~~lfV~nLp~~--~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~---l~g~ 94 (109)
T 2rs2_A 21 MGSSGCKMFIGGLSWQ--TTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHE---LDSK 94 (109)
T ss_dssp -----CCEEEESCCTT--CCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEE---ETTE
T ss_pred cCCCCCEEEEeCCCCC--CCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCc---CCCE
Confidence 4567899999999999 9999999999999999999985 346899999999999999999987 477 9999
Q ss_pred eEEEEeeecCCC
Q 043011 91 FLHISYSVLEDS 102 (133)
Q Consensus 91 ~l~V~~a~~~~~ 102 (133)
.|+|+++.++..
T Consensus 95 ~l~V~~a~~~~~ 106 (109)
T 2rs2_A 95 TIDPKVAFPRRA 106 (109)
T ss_dssp EEEEEECCCCCC
T ss_pred EEEEEEccCCCC
Confidence 999999988763
No 130
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=3.5e-20 Score=122.65 Aligned_cols=75 Identities=16% Similarity=0.255 Sum_probs=68.0
Q ss_pred CCCCCe-EEEeccCCCCCCCHHH----HHHHhhcC-CCeeEEEEcCCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCe
Q 043011 17 DERSPN-LFVANCGPAVGVSYEA----IGSVFSAF-GDVKGIYAADDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANR 90 (133)
Q Consensus 17 ~~~~~~-L~V~Nl~~~~~vte~~----L~~~F~~f-G~V~~v~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr 90 (133)
.+|+.| |||+||+.+ +++++ |+++|++| |+|.+|. .|+|||.|.+.++|++|++.|||.. +.||
T Consensus 5 ~~p~~T~lYV~NL~~~--~~~~~lk~~L~~lF~~yGG~Vl~Vt-----gG~AfV~F~~~esA~~A~~~l~G~~---l~gr 74 (96)
T 2diu_A 5 SSGCHTLLYVYNLPAN--KDGKSVSNRLRRLSDNCGGKVLSIT-----GCSAILRFINQDSAERAQKRMENED---VFGN 74 (96)
T ss_dssp CCCSSEEEEEESCCTT--SCHHHHHHHHHHHHHTTTCCEEECC-----TTCEEEEESSHHHHHHHHHHHTTCC---SSSS
T ss_pred CCCcceEEEEeCCCCc--CCHHHHHHHHHHHHHHcCCeeEEEe-----cCEEEEEECCHHHHHHHHHHhcCCc---cCCc
Confidence 456777 999999999 99988 55899999 5999982 3999999999999999999999999 9999
Q ss_pred eEEEEeeecCC
Q 043011 91 FLHISYSVLED 101 (133)
Q Consensus 91 ~l~V~~a~~~~ 101 (133)
+|+|+||+.+.
T Consensus 75 ~i~v~~A~~~s 85 (96)
T 2diu_A 75 RIIVSFTPKNR 85 (96)
T ss_dssp CCEEESSCCSC
T ss_pred eEEEEecCCCc
Confidence 99999998886
No 131
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.83 E-value=3.6e-20 Score=133.85 Aligned_cols=77 Identities=29% Similarity=0.337 Sum_probs=70.4
Q ss_pred CCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEc-CCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCC--eeEEEEe
Q 043011 20 SPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAA-DDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLAN--RFLHISY 96 (133)
Q Consensus 20 ~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~-~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~g--r~l~V~~ 96 (133)
..+|||+||++. +|+++|+++|++||+|.+|++. ++++|||||+|.+.++|++|++.|||+. +.| +.|+|+|
T Consensus 46 vl~l~VgNL~~~--vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~---i~g~g~~L~V~~ 120 (164)
T 1sjr_A 46 VLRIIVENLFYP--VTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQN---IYNACCTLRIDF 120 (164)
T ss_dssp EEEEEECSCCSC--CCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBC---SSSSCSCEEEEE
T ss_pred eEEEEEeCcCCC--CCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCE---ecCCCcEEEEEE
Confidence 356889999999 9999999999999999999985 3457899999999999999999999999 965 9999999
Q ss_pred eecCC
Q 043011 97 SVLED 101 (133)
Q Consensus 97 a~~~~ 101 (133)
|+++.
T Consensus 121 Ak~~~ 125 (164)
T 1sjr_A 121 SKLTS 125 (164)
T ss_dssp CSSSS
T ss_pred ecCCc
Confidence 99876
No 132
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.83 E-value=2.1e-20 Score=143.20 Aligned_cols=101 Identities=10% Similarity=0.088 Sum_probs=88.1
Q ss_pred CCCCCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEcCC---CCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCeeE
Q 043011 16 EDERSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAADD---SGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRFL 92 (133)
Q Consensus 16 ~~~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~~~---~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~l 92 (133)
...++++|||+|||++ +|+++|+++|++||+|.+|.+..+ ++|||||+|.+.++|++|++ +||.. +.|+.|
T Consensus 37 ~~~~~~~l~V~nLp~~--~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~-~~~~~---~~g~~i 110 (292)
T 2ghp_A 37 RNRELTTVLVKNLPKS--YNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAIT-KTHKV---VGQNEI 110 (292)
T ss_dssp -----CEEEEEEECTT--CCHHHHHHHHGGGSCEEEEEEEECTTSSSEEEEEEESSHHHHHHHHT-TTTCE---ETTEEC
T ss_pred cCCCCCEEEEeCCCCC--CCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEEECCHHHHHHHHH-hCCcE---eCCcEE
Confidence 4556899999999999 999999999999999999998532 58999999999999999995 99999 999999
Q ss_pred EEEeeecCCCCCCCCCcceeEeeecCCCCCchhhhhhhcc
Q 043011 93 HISYSVLEDSPATRHITSSVPVSLVASELNIPGLHSCFMT 132 (133)
Q Consensus 93 ~V~~a~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~ 132 (133)
.|.++. ..+|+|+|||..++..+|+++|..
T Consensus 111 ~v~~~~----------~~~l~v~nlp~~~t~~~l~~~f~~ 140 (292)
T 2ghp_A 111 IVSHLT----------ECTLWMTNFPPSYTQRNIRDLLQD 140 (292)
T ss_dssp EEEECC----------SCEEEEECCCTTCCHHHHHHHHHH
T ss_pred EEEECC----------CCEEEEECCCCCCCHHHHHHHHHH
Confidence 999862 356999999999999999999963
No 133
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=1.3e-19 Score=121.86 Aligned_cols=80 Identities=13% Similarity=0.199 Sum_probs=72.2
Q ss_pred CCCCCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEc----CCCCCeEEEEECCHHHHHHHHHHhcCCCCCCC----
Q 043011 16 EDERSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAA----DDSGARVIVSYFDEGSAQAAFNSLHSRPCPDL---- 87 (133)
Q Consensus 16 ~~~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~----~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l---- 87 (133)
...+.++|||+||+++ +++++|+++|++||+|.++.+. +.++|||||+|.+.++|++|++.|||+. +
T Consensus 21 ~~~~~~~l~V~nlp~~--~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~---~~~~~ 95 (114)
T 1x5o_A 21 QEQDPTNLYISNLPLS--MDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKF---IKTPP 95 (114)
T ss_dssp CCCCTTEEEEESCCTT--CCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCC---CCCCT
T ss_pred cCCCCCEEEEeCCCCC--CCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCE---EcCCc
Confidence 3456799999999999 9999999999999999999884 3468999999999999999999999999 7
Q ss_pred ----CCeeEEEEeeecC
Q 043011 88 ----ANRFLHISYSVLE 100 (133)
Q Consensus 88 ----~gr~l~V~~a~~~ 100 (133)
.+++|.|.|+.++
T Consensus 96 ~~~~~~~~l~v~~a~p~ 112 (114)
T 1x5o_A 96 GVSAPTEPLLCKFSGPS 112 (114)
T ss_dssp TSCCCSSCBEEEECCCS
T ss_pred cccCCCCceeEEccCCC
Confidence 5788999999865
No 134
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.82 E-value=3.5e-20 Score=131.25 Aligned_cols=81 Identities=22% Similarity=0.305 Sum_probs=74.6
Q ss_pred CCCCCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEc-----CCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCe
Q 043011 16 EDERSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAA-----DDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANR 90 (133)
Q Consensus 16 ~~~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~-----~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr 90 (133)
...+.++|||+||+.+ +|+++|+++|++||+|.+|.+. +.++|||||+|.+.++|++|++.|||.. +.|+
T Consensus 35 ~~~~~~~l~V~nlp~~--~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~---~~g~ 109 (156)
T 1h2v_Z 35 LLKKSCTLYVGNLSFY--TTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTR---LDDR 109 (156)
T ss_dssp TTTTCCEEEEESCCTT--CCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSE---ETTE
T ss_pred cCCCCCEEEEeCCCCC--CCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCE---ECCe
Confidence 3457899999999999 9999999999999999999984 3467999999999999999999999999 9999
Q ss_pred eEEEEeeecCC
Q 043011 91 FLHISYSVLED 101 (133)
Q Consensus 91 ~l~V~~a~~~~ 101 (133)
.|+|+|+.+..
T Consensus 110 ~l~V~~a~~~~ 120 (156)
T 1h2v_Z 110 IIRTDWDAGFK 120 (156)
T ss_dssp ECEEEEESCCC
T ss_pred EEEEEECCCCC
Confidence 99999998776
No 135
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1.2e-20 Score=124.79 Aligned_cols=79 Identities=22% Similarity=0.311 Sum_probs=73.1
Q ss_pred CCCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEc-----CCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCeeE
Q 043011 18 ERSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAA-----DDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRFL 92 (133)
Q Consensus 18 ~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~-----~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~l 92 (133)
.+.++|||+||+.+ +++++|+++|++||+|.++.+. +.++|||||+|.+.++|++|++.|||.. +.|+.|
T Consensus 6 ~~~~~l~V~nlp~~--~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~---~~g~~l 80 (104)
T 1p1t_A 6 RSLRSVFVGNIPYE--ATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGRE---FSGRAL 80 (104)
T ss_dssp HHHSCEEEESCCTT--SCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBS---CSSSCB
T ss_pred CCccEEEEeCCCCc--CCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCe---eCCcEE
Confidence 45789999999999 9999999999999999999874 2358999999999999999999999999 999999
Q ss_pred EEEeeecCC
Q 043011 93 HISYSVLED 101 (133)
Q Consensus 93 ~V~~a~~~~ 101 (133)
+|+|+.++.
T Consensus 81 ~v~~a~~~~ 89 (104)
T 1p1t_A 81 RVDNAASEK 89 (104)
T ss_dssp EEEETTCTT
T ss_pred EEEeCCCcc
Confidence 999998876
No 136
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.82 E-value=4.8e-21 Score=123.88 Aligned_cols=75 Identities=19% Similarity=0.268 Sum_probs=67.4
Q ss_pred CeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEc-----CCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCeeEEEE
Q 043011 21 PNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAA-----DDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRFLHIS 95 (133)
Q Consensus 21 ~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~-----~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~l~V~ 95 (133)
++|||+||+++ +++++|+++|++||+|.++.+. +.++|||||+|.+.+ |++|+..|||.. +.|+.|+|+
T Consensus 2 ~~l~V~nLp~~--~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~---~~g~~l~V~ 75 (90)
T 2ki2_A 2 RNIYVGNLVYS--ATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTD---FMGRTIRVT 75 (90)
T ss_dssp EEEEEEEECTT--SSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSC---CSSSSCSEE
T ss_pred cEEEECCCCCC--CCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCE---ECCeEEEEE
Confidence 58999999999 9999999999999999999985 356899999999999 999999999999 999999999
Q ss_pred eeecCC
Q 043011 96 YSVLED 101 (133)
Q Consensus 96 ~a~~~~ 101 (133)
+|.++.
T Consensus 76 ~a~~~~ 81 (90)
T 2ki2_A 76 EANPKK 81 (90)
T ss_dssp EC----
T ss_pred EcCCCC
Confidence 998876
No 137
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=2.4e-20 Score=123.86 Aligned_cols=80 Identities=19% Similarity=0.220 Sum_probs=73.7
Q ss_pred CCCCCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEcC-----CCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCe
Q 043011 16 EDERSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAAD-----DSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANR 90 (133)
Q Consensus 16 ~~~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~~-----~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr 90 (133)
...+.++|||+||+++ +++++|+++|++||+|.+|.+.. .++|||||+|.+.++|++|+.. ||.. +.|+
T Consensus 12 ~~~~~~~l~V~nlp~~--~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~---~~g~ 85 (105)
T 2dh8_A 12 GADEIGKLFVGGLDWS--TTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHT---LDGR 85 (105)
T ss_dssp CSSSSSEECCBSCCTT--CCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEE---ETTE
T ss_pred CCCCCCEEEEeCCCCC--CCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCe---ECCE
Confidence 4567899999999999 99999999999999999998742 4579999999999999999999 9999 9999
Q ss_pred eEEEEeeecCC
Q 043011 91 FLHISYSVLED 101 (133)
Q Consensus 91 ~l~V~~a~~~~ 101 (133)
.|+|+|+.++.
T Consensus 86 ~l~V~~a~~~~ 96 (105)
T 2dh8_A 86 NIDPKPCTPRG 96 (105)
T ss_dssp EEBCCCSCCSS
T ss_pred EEEEEEccCCC
Confidence 99999998886
No 138
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=1.1e-20 Score=123.91 Aligned_cols=80 Identities=19% Similarity=0.214 Sum_probs=70.8
Q ss_pred CCCCCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEc-----CCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCe
Q 043011 16 EDERSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAA-----DDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANR 90 (133)
Q Consensus 16 ~~~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~-----~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr 90 (133)
.....++|||+||+++ +++++|+++|++||.|.++.+. ++++|||||+|.+.++|++|++.|||.. +.|+
T Consensus 11 ~~~~~~~l~v~nLp~~--~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~---~~g~ 85 (98)
T 2cqp_A 11 GKPGPTIIKVQNMPFT--VSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRP---IGSR 85 (98)
T ss_dssp CCCSSEEEEEESCCTT--CCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCE---ETTE
T ss_pred CCCCCCEEEEeCCCCC--CCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCe---eCCe
Confidence 3456789999999999 9999999999999999755432 3468999999999999999999999999 9999
Q ss_pred eEEEEeeecC
Q 043011 91 FLHISYSVLE 100 (133)
Q Consensus 91 ~l~V~~a~~~ 100 (133)
.|+|+++..+
T Consensus 86 ~l~V~~a~~~ 95 (98)
T 2cqp_A 86 KVKLVLGSGP 95 (98)
T ss_dssp ECEEEESSCS
T ss_pred EEEEEEcCCC
Confidence 9999998754
No 139
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.82 E-value=1.3e-20 Score=119.95 Aligned_cols=70 Identities=16% Similarity=0.264 Sum_probs=64.5
Q ss_pred CCeEEEeccCCCCCC------CHHHHHHHhhcCCCeeEEEEc---CCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCe
Q 043011 20 SPNLFVANCGPAVGV------SYEAIGSVFSAFGDVKGIYAA---DDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANR 90 (133)
Q Consensus 20 ~~~L~V~Nl~~~~~v------te~~L~~~F~~fG~V~~v~~~---~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr 90 (133)
+++|||+|||.. + ++++|+++|++||+|.++.+. ++++|||||+|.+.++|++|++.|||.. +.|+
T Consensus 1 ~~~l~V~nLp~~--~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~---~~g~ 75 (81)
T 2krb_A 1 DSVIVVDNVPQV--GPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYK---LDKQ 75 (81)
T ss_dssp CCEEEEESCCCC--CTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCC---CSSS
T ss_pred CCEEEEeCCCCC--cHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcc---cCCc
Confidence 479999999999 8 679999999999999999985 3568999999999999999999999999 9999
Q ss_pred -eEEE
Q 043011 91 -FLHI 94 (133)
Q Consensus 91 -~l~V 94 (133)
+|+|
T Consensus 76 ~~l~V 80 (81)
T 2krb_A 76 HTFRV 80 (81)
T ss_dssp SCCCC
T ss_pred eeEEe
Confidence 8876
No 140
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.82 E-value=5.3e-20 Score=119.81 Aligned_cols=79 Identities=20% Similarity=0.357 Sum_probs=64.8
Q ss_pred CCCCCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEcCCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCeeEEEE
Q 043011 16 EDERSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAADDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRFLHIS 95 (133)
Q Consensus 16 ~~~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~l~V~ 95 (133)
...+..+|||+||+++ +|+++|+++|++||+|.++.+..++||||||+|.+.++|++ |+|.. ..+.|+.|.|.
T Consensus 7 ~~~~~~~l~V~~Lp~~--~te~~L~~~F~~~G~i~~v~i~~~srGfaFV~F~~~~~A~~----~~~~~-~~~~g~~v~v~ 79 (89)
T 3d2w_A 7 HHHHGSKVFVGRCTED--MTAEELQQFFCQYGEVVDVFIPKPFRAFAFVTFADDKVAQS----LCGED-LIIKGISVHIS 79 (89)
T ss_dssp ----CCEEEEESCCTT--CCHHHHHHHHTTTSCEEEEECCSSCCSEEEEEESCHHHHHH----HTTCE-EEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCC--CCHHHHHHHHhccCCEEEEEEeeCCCCEEEEEECCHHHHHH----HcCCC-cccCCEEEEEE
Confidence 4567899999999999 99999999999999999999987899999999999999983 66764 11459999999
Q ss_pred eeecCC
Q 043011 96 YSVLED 101 (133)
Q Consensus 96 ~a~~~~ 101 (133)
++.++.
T Consensus 80 ~a~~k~ 85 (89)
T 3d2w_A 80 NAEPKH 85 (89)
T ss_dssp ECC---
T ss_pred EcCCCC
Confidence 998775
No 141
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.82 E-value=4.3e-20 Score=118.64 Aligned_cols=76 Identities=17% Similarity=0.258 Sum_probs=68.8
Q ss_pred CCCCCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEc-----CCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCe
Q 043011 16 EDERSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAA-----DDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANR 90 (133)
Q Consensus 16 ~~~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~-----~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr 90 (133)
...+.++|||+||+++ +++++|+++|++||+|.++.+. ++++|||||+|.+.++|++|++ ++|.. +.|+
T Consensus 7 ~~~~~~~l~V~nlp~~--~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~---~~g~ 80 (87)
T 3s7r_A 7 NEEDAGKMFVGGLSWD--TSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHR---LDGR 80 (87)
T ss_dssp CCSCTTEEEEECCCTT--CCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEE---ETTE
T ss_pred CCCCCCEEEEeCCCCC--CCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCE---ECCE
Confidence 4567899999999999 9999999999999999999884 3458999999999999999996 58888 9999
Q ss_pred eEEEEee
Q 043011 91 FLHISYS 97 (133)
Q Consensus 91 ~l~V~~a 97 (133)
.|+|++|
T Consensus 81 ~i~v~~A 87 (87)
T 3s7r_A 81 VIDPKKA 87 (87)
T ss_dssp EEEEEEC
T ss_pred EEEEEeC
Confidence 9999986
No 142
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=2.4e-19 Score=119.37 Aligned_cols=79 Identities=18% Similarity=0.198 Sum_probs=71.7
Q ss_pred CCCCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeE-EEEc----CCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCee
Q 043011 17 DERSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKG-IYAA----DDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRF 91 (133)
Q Consensus 17 ~~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~-v~~~----~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~ 91 (133)
..+..+|||+||+++ +|+++|+++|++||.|.+ |.+. ++++|||||+|.+.++|++|+.. ||+. ++||.
T Consensus 12 ~~~~~~l~V~nLp~~--~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~---~~gr~ 85 (104)
T 1wg5_A 12 TANDGFVRLRGLPFG--CSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKER---IGHRY 85 (104)
T ss_dssp CSCCCEEEEESCCTT--CCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCC---SSSSC
T ss_pred CCCCCEEEEeCCCCC--CCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-Ccch---hCCcE
Confidence 356799999999999 999999999999999987 7763 45789999999999999999998 9999 99999
Q ss_pred EEEEeeecCC
Q 043011 92 LHISYSVLED 101 (133)
Q Consensus 92 l~V~~a~~~~ 101 (133)
|.|.++.+++
T Consensus 86 i~v~~~~~~~ 95 (104)
T 1wg5_A 86 IEIFKSSRAE 95 (104)
T ss_dssp CEEEEECTTT
T ss_pred EEEEECCHHH
Confidence 9999987765
No 143
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.82 E-value=2e-20 Score=133.69 Aligned_cols=78 Identities=17% Similarity=0.172 Sum_probs=71.2
Q ss_pred CCCeEEEeccCCCCCCCHHHHHHHhhcCC--CeeEEEEc-----CCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCee
Q 043011 19 RSPNLFVANCGPAVGVSYEAIGSVFSAFG--DVKGIYAA-----DDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRF 91 (133)
Q Consensus 19 ~~~~L~V~Nl~~~~~vte~~L~~~F~~fG--~V~~v~~~-----~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~ 91 (133)
..++|||+||+++ +|+++|+++|++|| +|.+|.+. ++++|||||+|.+.++|++|++.|||.. +.|+.
T Consensus 54 ~~~~lfVgnLp~~--~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~---~~Gr~ 128 (156)
T 3n9u_C 54 RRAAVYVGSFSWW--TTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKV---LNGEK 128 (156)
T ss_dssp --CEEEEECCCTT--CCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCE---ETTEE
T ss_pred CCCEEEEeCCCCC--CCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCE---ECCeE
Confidence 4689999999999 99999999999999 99999873 4568999999999999999999999999 99999
Q ss_pred EEEEeeecCC
Q 043011 92 LHISYSVLED 101 (133)
Q Consensus 92 l~V~~a~~~~ 101 (133)
|+|+++.++.
T Consensus 129 l~V~~a~~~~ 138 (156)
T 3n9u_C 129 VDVRPATRQN 138 (156)
T ss_dssp CEEEECCHHH
T ss_pred eEEEEcCCCc
Confidence 9999997754
No 144
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1.7e-19 Score=119.34 Aligned_cols=79 Identities=13% Similarity=0.175 Sum_probs=71.2
Q ss_pred CCCCCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEc-----CCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCe
Q 043011 16 EDERSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAA-----DDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANR 90 (133)
Q Consensus 16 ~~~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~-----~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr 90 (133)
...+.++|||+||+++ +++++|+++|++||+|.+|.+. +.++|||||+|.+.++|++|+. ++.. +.|+
T Consensus 11 ~~~~~~~l~v~nlp~~--~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~---~~g~ 83 (103)
T 2cqg_A 11 AVQKTSDLIVLGLPWK--TTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHM---IDGR 83 (103)
T ss_dssp CCCCCCCEEEESCCSS--CCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEE---ETTE
T ss_pred ccCCCCEEEEEcCCCc--CCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCe---eCCe
Confidence 3467899999999999 9999999999999999999874 3457999999999999999999 4667 9999
Q ss_pred eEEEEeeecCC
Q 043011 91 FLHISYSVLED 101 (133)
Q Consensus 91 ~l~V~~a~~~~ 101 (133)
.|+|+|+.++.
T Consensus 84 ~l~v~~a~~~~ 94 (103)
T 2cqg_A 84 WCDCKLPNSKQ 94 (103)
T ss_dssp EEEEECCCTTC
T ss_pred EEEEEecCCCC
Confidence 99999999886
No 145
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.82 E-value=2.5e-20 Score=116.69 Aligned_cols=70 Identities=16% Similarity=0.292 Sum_probs=65.2
Q ss_pred eEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEc-----CCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCeeEEEEe
Q 043011 22 NLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAA-----DDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRFLHISY 96 (133)
Q Consensus 22 ~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~-----~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~l~V~~ 96 (133)
+|||+|||++ +++++|+++|++||+|.++.+. +.++|||||+|.+.++|++|++ |||.. +.|++|+|++
T Consensus 1 ~l~v~nlp~~--~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~---~~g~~l~v~~ 74 (75)
T 2mss_A 1 KIFVGGLSVN--TTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHE---INNKMVECKK 74 (75)
T ss_dssp CEEEECCCSS--CCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCC---SSSCCCEEEC
T ss_pred CEEEecCCCC--CCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCE---ECCEEEEEEe
Confidence 5899999999 9999999999999999999874 3468999999999999999998 99999 9999999998
Q ss_pred e
Q 043011 97 S 97 (133)
Q Consensus 97 a 97 (133)
|
T Consensus 75 A 75 (75)
T 2mss_A 75 A 75 (75)
T ss_dssp C
T ss_pred C
Confidence 6
No 146
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.82 E-value=1.9e-20 Score=123.51 Aligned_cols=80 Identities=15% Similarity=0.142 Sum_probs=71.1
Q ss_pred CCCCCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEE----cCCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCee
Q 043011 16 EDERSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYA----ADDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRF 91 (133)
Q Consensus 16 ~~~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~----~~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~ 91 (133)
...+.++|||+||+++ +|+++|+++|++||.|.+..+ .+.++|||||+|.+.++|++|++ |||.. +.|+.
T Consensus 13 ~~~~~~~l~V~nLp~~--~t~~~l~~~F~~~G~v~~~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~---~~g~~ 86 (101)
T 1fj7_A 13 ESTTPFNLFIGNLNPN--KSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLK---VFGNE 86 (101)
T ss_dssp TCSCSEEEEEECCCTT--SCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCC---BTTBC
T ss_pred cCCCCCEEEEeCCCCC--CCHHHHHHHHHHhCCcceEEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcE---ECCcE
Confidence 4456889999999999 999999999999998866222 25689999999999999999998 99999 99999
Q ss_pred EEEEeeecCC
Q 043011 92 LHISYSVLED 101 (133)
Q Consensus 92 l~V~~a~~~~ 101 (133)
|+|+++.++.
T Consensus 87 l~V~~a~~~~ 96 (101)
T 1fj7_A 87 IKLEKPKGRD 96 (101)
T ss_dssp CEEECCSCCC
T ss_pred EEEEEcCCCC
Confidence 9999998876
No 147
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=1.3e-19 Score=119.63 Aligned_cols=81 Identities=15% Similarity=0.186 Sum_probs=72.0
Q ss_pred CCCCCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEE--cCCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCeeEE
Q 043011 16 EDERSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYA--ADDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRFLH 93 (133)
Q Consensus 16 ~~~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~--~~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~l~ 93 (133)
...++++|||+||+++ +++++|+++|++|+.|.-+.. .++++|||||+|.+.++|++|++.|||.. +.|+.|+
T Consensus 11 ~~~~~~~l~V~nLp~~--~t~~~l~~~F~~~~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~---~~g~~l~ 85 (102)
T 2fc8_A 11 RSQPSKTLFVKGLSED--TTEETLKESFDGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGE---IDGNKVT 85 (102)
T ss_dssp SSCCCSSEEEECCCTT--CCHHHHHHTSTTCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCE---ETTEECE
T ss_pred CCCCCCEEEEeCCCCc--cCHHHHHHHhcCCeEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCe---ECCeEEE
Confidence 4567899999999999 999999999999976655543 23568999999999999999999999999 9999999
Q ss_pred EEeeecCC
Q 043011 94 ISYSVLED 101 (133)
Q Consensus 94 V~~a~~~~ 101 (133)
|+|+.++.
T Consensus 86 V~~a~~~~ 93 (102)
T 2fc8_A 86 LDWAKPKG 93 (102)
T ss_dssp EEECCCCC
T ss_pred EEEecCCC
Confidence 99999886
No 148
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.82 E-value=8.7e-21 Score=123.64 Aligned_cols=78 Identities=21% Similarity=0.234 Sum_probs=67.9
Q ss_pred CCCCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEc-----CCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCee
Q 043011 17 DERSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAA-----DDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRF 91 (133)
Q Consensus 17 ~~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~-----~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~ 91 (133)
.++.++|||+||+++ +++++|+++|++||.|.++.+. ++++|||||+|.+.++|++|++.|||.. +.|+.
T Consensus 12 ~~~~~~l~V~nlp~~--~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~---~~gr~ 86 (95)
T 2ek1_A 12 KPGPTVIKVQNMPFT--VSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRP---IGSRK 86 (95)
T ss_dssp ---CEEEEEECCCTT--CCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCE---ETTEE
T ss_pred CCCCCEEEEeCCCCC--CCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCe---ECCcE
Confidence 345799999999999 9999999999999999766542 3468999999999999999999999999 99999
Q ss_pred EEEEeeec
Q 043011 92 LHISYSVL 99 (133)
Q Consensus 92 l~V~~a~~ 99 (133)
|+|+++.+
T Consensus 87 l~v~~a~s 94 (95)
T 2ek1_A 87 VKLSGPSS 94 (95)
T ss_dssp CEEECCC-
T ss_pred EEEEeccC
Confidence 99999853
No 149
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=5.6e-20 Score=121.74 Aligned_cols=82 Identities=17% Similarity=0.214 Sum_probs=73.6
Q ss_pred CCCCCCeEEEeccCCCCCCCHHHHHHHhhc-CCCeeEEEEc----CCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCe
Q 043011 16 EDERSPNLFVANCGPAVGVSYEAIGSVFSA-FGDVKGIYAA----DDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANR 90 (133)
Q Consensus 16 ~~~~~~~L~V~Nl~~~~~vte~~L~~~F~~-fG~V~~v~~~----~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr 90 (133)
...++.+|||+||+++ +|+++|+++|++ ||+|.+|.+. +.++|||||+|.+.++|++|++.|||.. .+.|+
T Consensus 5 ~~~~~~~l~V~nLp~~--~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~--~~~g~ 80 (104)
T 2dhg_A 5 SSGPEYSLFVGDLTPD--VDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAV--GLGSK 80 (104)
T ss_dssp CSSCCCCEEEECCCTT--CCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCC--SSSSS
T ss_pred CCCCCcEEEEeCCCCC--CCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCc--ccCCE
Confidence 3457899999999999 999999999999 9999999884 3468999999999999999999999965 26899
Q ss_pred eEEEEeeecCC
Q 043011 91 FLHISYSVLED 101 (133)
Q Consensus 91 ~l~V~~a~~~~ 101 (133)
.|+|+|+.++.
T Consensus 81 ~l~v~~a~~~~ 91 (104)
T 2dhg_A 81 PVRLSVAIPKA 91 (104)
T ss_dssp CCCCCBCCCCC
T ss_pred eEEEEEccCCC
Confidence 99999998776
No 150
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.82 E-value=7.1e-20 Score=125.70 Aligned_cols=78 Identities=18% Similarity=0.270 Sum_probs=72.5
Q ss_pred CCCCCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEcCCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCeeEEEE
Q 043011 16 EDERSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAADDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRFLHIS 95 (133)
Q Consensus 16 ~~~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~l~V~ 95 (133)
...++++|||+|+ + +|+++|+++|++||+|.+|.+ .+++|||||+|.+.++|++|++.|||.. +.|+.|+|+
T Consensus 35 ~~~~~~~lfVgnl--~--~te~~L~~~F~~~G~I~~v~i-~~~kg~aFV~f~~~~~A~~Ai~~lng~~---~~g~~l~V~ 106 (121)
T 2bz2_A 35 APRKGNTLYVYGE--D--MTPTLLRGAFSPFGNIIDLSM-DPPRNCAFVTYEKMESADQAVAELNGTQ---VESVQLKVN 106 (121)
T ss_dssp CCCCCCEEEEECS--S--CCHHHHHHHHSTTCCCSCEEE-ETTTTEEEEECSSHHHHHHHHHHHTTCB---CSSCBCEEE
T ss_pred CCCCCCEEEEcCC--C--CCHHHHHHHHHccCCEEEEEE-eCCCCEEEEEECCHHHHHHHHHHhCCCE---ECCeEEEEE
Confidence 3457899999995 6 999999999999999999998 5789999999999999999999999999 999999999
Q ss_pred eeecCC
Q 043011 96 YSVLED 101 (133)
Q Consensus 96 ~a~~~~ 101 (133)
|+.++.
T Consensus 107 ~a~~~~ 112 (121)
T 2bz2_A 107 IARKQP 112 (121)
T ss_dssp ECCSSC
T ss_pred EeCCCC
Confidence 998876
No 151
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=5.8e-20 Score=124.10 Aligned_cols=77 Identities=13% Similarity=0.235 Sum_probs=71.7
Q ss_pred CCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEc-----CCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCeeEE
Q 043011 19 RSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAA-----DDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRFLH 93 (133)
Q Consensus 19 ~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~-----~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~l~ 93 (133)
+.++|||+||+++ +++++|+++|++||+|.+|.+. +.++|||||+|.+.++|++|++. ||.. +.|+.|+
T Consensus 26 ~~~~l~V~nLp~~--~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~---~~g~~l~ 99 (116)
T 1x4b_A 26 QFRKLFIGGLSFE--TTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHS---IDGRVVE 99 (116)
T ss_dssp HHTEEEEECCTTC--CCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEE---ETTEEEE
T ss_pred CCCEEEEeCCCCC--CCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcE---ECCEEEE
Confidence 4589999999999 9999999999999999999884 34689999999999999999998 9999 9999999
Q ss_pred EEeeecCC
Q 043011 94 ISYSVLED 101 (133)
Q Consensus 94 V~~a~~~~ 101 (133)
|+|+.++.
T Consensus 100 V~~a~~~~ 107 (116)
T 1x4b_A 100 PKRAVARE 107 (116)
T ss_dssp EECCSSCC
T ss_pred EEECCCCc
Confidence 99999887
No 152
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.81 E-value=6.1e-20 Score=124.56 Aligned_cols=77 Identities=13% Similarity=0.161 Sum_probs=66.5
Q ss_pred CCCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEcCCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCee-----E
Q 043011 18 ERSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAADDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRF-----L 92 (133)
Q Consensus 18 ~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~-----l 92 (133)
....+|||+||+++ +++++|+++|++||+|.++.+..+ |||||+|.+.++|++|++.|||+. +.|+. +
T Consensus 14 r~~~~l~V~nLp~~--~t~~~l~~~F~~~G~v~~~~i~~~--g~afV~f~~~~~a~~Ai~~l~g~~---~~gr~~~~~~i 86 (115)
T 3beg_B 14 RSENRVVVSGLPPS--GSWQDLKDHMREAGDVCYADVYRD--GTGVVEFVRKEDMTYAVRKLDNTK---FRSHEGETAYI 86 (115)
T ss_dssp ---CCEEEEECCSS--CCTTHHHHHHGGGSCEEEEEECTT--SEEEEEESSHHHHHHHHHHHTTCB---CCCTTSCCCBC
T ss_pred CCCcEEEEeCCCCC--CCHHHHHHHHHhcCCeEEEEEecC--CEEEEEECCHHHHHHHHHHhCCCE---ECCcEeeeEEE
Confidence 35689999999999 999999999999999999999544 999999999999999999999999 99998 7
Q ss_pred EEEeeecCC
Q 043011 93 HISYSVLED 101 (133)
Q Consensus 93 ~V~~a~~~~ 101 (133)
+|..+.++.
T Consensus 87 ~v~~~~~~~ 95 (115)
T 3beg_B 87 RVKVDGPRS 95 (115)
T ss_dssp EEEECC---
T ss_pred EeccCCCCC
Confidence 777766654
No 153
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.81 E-value=7.3e-20 Score=127.88 Aligned_cols=82 Identities=13% Similarity=0.203 Sum_probs=73.7
Q ss_pred CCCCCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeE--------EEE--cCCCCCeEEEEECCHHHHHHHHHHhcCCCCC
Q 043011 16 EDERSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKG--------IYA--ADDSGARVIVSYFDEGSAQAAFNSLHSRPCP 85 (133)
Q Consensus 16 ~~~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~--------v~~--~~~~kg~afV~f~~~~~A~~A~~~l~g~~~~ 85 (133)
...++++|||+||+++ +|+++|+++|++||.|.+ +.+ .++++|||||+|.+.++|.+|+..|||..
T Consensus 41 ~~~~~~~l~V~nLp~~--~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~-- 116 (143)
T 3egn_A 41 PGEPNCRIYVKNLAKH--VQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYV-- 116 (143)
T ss_dssp CCSCCSEEEEEEECTT--CCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBE--
T ss_pred CCCCCCEEEEeCCCCC--CCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCE--
Confidence 3567899999999999 999999999999999865 332 36789999999999999999999999999
Q ss_pred CCCCeeEEEEeeecCCC
Q 043011 86 DLANRFLHISYSVLEDS 102 (133)
Q Consensus 86 ~l~gr~l~V~~a~~~~~ 102 (133)
+.|+.|+|+||.+..+
T Consensus 117 -~~g~~l~V~~a~~~~~ 132 (143)
T 3egn_A 117 -LFGKPMVVQFARSARP 132 (143)
T ss_dssp -ETTEECEEEECCCSCC
T ss_pred -eCCcEEEEEECCCCCC
Confidence 9999999999987764
No 154
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.81 E-value=1.8e-19 Score=131.15 Aligned_cols=80 Identities=24% Similarity=0.254 Sum_probs=73.8
Q ss_pred CCCCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEc----CCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCeeE
Q 043011 17 DERSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAA----DDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRFL 92 (133)
Q Consensus 17 ~~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~----~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~l 92 (133)
..++++|||+||+++ +++++|+++|++||+|.+|.+. +.++|||||+|.+.++|++|++.|||.. +.|+.|
T Consensus 85 ~~~~~~l~V~nLp~~--~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~---l~Gr~l 159 (177)
T 2f3j_A 85 VETGAKLLVSNLDFG--VSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVP---LDGRPM 159 (177)
T ss_dssp CTTCEEEEEECCCSC--CCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCB---CSSSBC
T ss_pred CCCCCEEEEeCCCCC--CCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCE---ECCEEE
Confidence 345789999999999 9999999999999999999985 3468999999999999999999999999 999999
Q ss_pred EEEeeecCC
Q 043011 93 HISYSVLED 101 (133)
Q Consensus 93 ~V~~a~~~~ 101 (133)
+|+||.+..
T Consensus 160 ~V~~a~~~~ 168 (177)
T 2f3j_A 160 DIQLVASQI 168 (177)
T ss_dssp EEEEESSGG
T ss_pred EEEEecCCC
Confidence 999997765
No 155
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=4.7e-20 Score=118.96 Aligned_cols=78 Identities=23% Similarity=0.364 Sum_probs=68.3
Q ss_pred CCCCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEcCCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCeeEEEEe
Q 043011 17 DERSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAADDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRFLHISY 96 (133)
Q Consensus 17 ~~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~l~V~~ 96 (133)
..++++|||+||+++ +++++|+++|++||+|.++.+..+++|||||+|.+.++|++ +++.. ..+.|+.|.|.+
T Consensus 2 ~~~~~~l~V~nLp~~--~te~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~----~~~~~-~~~~g~~l~v~~ 74 (88)
T 1wf0_A 2 SSGSSGVFVGRCTGD--MTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQS----LCGED-LIIKGISVHISN 74 (88)
T ss_dssp CSCCCEEEEESCCSS--SCHHHHHHHSTTTSCCCEEECCSSCCSCCEEECSCHHHHHH----TTTCE-EEETTEEEEEEC
T ss_pred CCCCcEEEEeCCCCC--CCHHHHHHHHHHcCCeeEEEEecCCCCEEEEEECCHHHHHH----HhcCC-ceeCCEEEEEEe
Confidence 356899999999999 99999999999999999999977789999999999999975 45553 115899999999
Q ss_pred eecCC
Q 043011 97 SVLED 101 (133)
Q Consensus 97 a~~~~ 101 (133)
+.++.
T Consensus 75 a~~~~ 79 (88)
T 1wf0_A 75 AEPKH 79 (88)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 98876
No 156
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.81 E-value=1.2e-19 Score=123.71 Aligned_cols=77 Identities=13% Similarity=0.221 Sum_probs=71.4
Q ss_pred CCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEc-----CCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCeeEE
Q 043011 19 RSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAA-----DDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRFLH 93 (133)
Q Consensus 19 ~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~-----~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~l~ 93 (133)
+.++|||+||+.+ +|+++|+++|++||+|.+|.+. +.++|||||+|.+.++|++|+ .|||.. +.|+.|+
T Consensus 35 ~~~~l~V~nlp~~--~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~---~~g~~l~ 108 (124)
T 2jwn_A 35 DKRSVYVGNVDYG--STAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETV---FRGRTIK 108 (124)
T ss_dssp HHTEEEEEEECTT--CCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCE---ETTEECE
T ss_pred CCCEEEEeCCCCC--CCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCe---ECCeEEE
Confidence 3689999999999 9999999999999999999874 456899999999999999999 899999 9999999
Q ss_pred EEeeecCC
Q 043011 94 ISYSVLED 101 (133)
Q Consensus 94 V~~a~~~~ 101 (133)
|+|+.+..
T Consensus 109 V~~a~~~~ 116 (124)
T 2jwn_A 109 VLPKRTNM 116 (124)
T ss_dssp EEESSCCC
T ss_pred EEECCCCC
Confidence 99998765
No 157
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.81 E-value=7.2e-20 Score=131.06 Aligned_cols=82 Identities=18% Similarity=0.254 Sum_probs=73.7
Q ss_pred CCCCCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEcC-----CCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCe
Q 043011 16 EDERSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAAD-----DSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANR 90 (133)
Q Consensus 16 ~~~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~~-----~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr 90 (133)
...++++|||+||++. +++++|+++|++||+|.+|.+.. .++|||||+|.+.++|++|+..|||.. +.|+
T Consensus 68 ~~~~~~~l~V~nLp~~--~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~---~~g~ 142 (165)
T 1rk8_A 68 RSVEGWILFVTSIHEE--AQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAE---IMGQ 142 (165)
T ss_dssp CCC-CEEEEEESCCTT--CCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCE---ETTE
T ss_pred CCCCCCEEEEeCCCCC--CCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCE---ECCE
Confidence 3456778999999999 99999999999999999998842 358999999999999999999999999 9999
Q ss_pred eEEEEeeecCCC
Q 043011 91 FLHISYSVLEDS 102 (133)
Q Consensus 91 ~l~V~~a~~~~~ 102 (133)
.|.|.|+.++.+
T Consensus 143 ~l~V~~a~~~~~ 154 (165)
T 1rk8_A 143 TIQVDWCFVKGP 154 (165)
T ss_dssp ECEEEESEECC-
T ss_pred EEEEEEecCCCC
Confidence 999999998873
No 158
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=4.7e-20 Score=115.70 Aligned_cols=71 Identities=15% Similarity=0.283 Sum_probs=66.1
Q ss_pred CeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEc-----CCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCeeEEEE
Q 043011 21 PNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAA-----DDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRFLHIS 95 (133)
Q Consensus 21 ~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~-----~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~l~V~ 95 (133)
++|||+|||++ +++++|+++|++||+|.++.+. ++++|||||+|.+.++|++|++.++ .. +.|++|+|+
T Consensus 1 ~~l~v~nlp~~--~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~---~~g~~l~v~ 74 (77)
T 1uaw_A 1 CKMFIGGLSWQ--TTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HE---LDSKTIDPK 74 (77)
T ss_dssp CCEEEESCCSS--CCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CC---CSSCCCEEE
T ss_pred CEEEEeCCCCC--CCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-Cc---cCCEEEEEE
Confidence 57999999999 9999999999999999999874 3468999999999999999999999 88 999999999
Q ss_pred ee
Q 043011 96 YS 97 (133)
Q Consensus 96 ~a 97 (133)
+|
T Consensus 75 ~a 76 (77)
T 1uaw_A 75 VA 76 (77)
T ss_dssp EC
T ss_pred ec
Confidence 87
No 159
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=1.4e-19 Score=117.31 Aligned_cols=78 Identities=8% Similarity=0.133 Sum_probs=71.5
Q ss_pred CCCCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEc----CCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCeeE
Q 043011 17 DERSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAA----DDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRFL 92 (133)
Q Consensus 17 ~~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~----~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~l 92 (133)
....++|||+||+++ +++++|+++|++| .|.+|.+. ++++|||||+|.+.++|++|++ |||.. +.|+.|
T Consensus 7 ~~~~~~l~v~nLp~~--~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~---~~gr~i 79 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFN--VTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREY---MGGRYI 79 (91)
T ss_dssp CCCCCEEEEECCCSS--CCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEE---ETTEEE
T ss_pred CCCccEEEEECCCCC--CCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCce---eCCcEE
Confidence 456799999999999 9999999999999 99999874 3458999999999999999999 99999 999999
Q ss_pred EEEeeecCC
Q 043011 93 HISYSVLED 101 (133)
Q Consensus 93 ~V~~a~~~~ 101 (133)
.|.++.+++
T Consensus 80 ~v~~a~~~~ 88 (91)
T 2dgw_A 80 EVFREKSGP 88 (91)
T ss_dssp EEEEESSCC
T ss_pred EEEECCcCC
Confidence 999998774
No 160
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=7e-20 Score=125.43 Aligned_cols=80 Identities=16% Similarity=0.237 Sum_probs=70.5
Q ss_pred CCCCCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeE-EEE----cCCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCe
Q 043011 16 EDERSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKG-IYA----ADDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANR 90 (133)
Q Consensus 16 ~~~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~-v~~----~~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr 90 (133)
...+..+|||+||+++ +|+++|+++|++||.|.+ +.+ .++++|||||+|.+.++|++|++ |||.. +.|+
T Consensus 21 ~~~~~~~l~V~nLp~~--~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~---~~gr 94 (124)
T 1wel_A 21 PHEAGFCVYLKGLPFE--AENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQY---MGNR 94 (124)
T ss_dssp CCCCCCEEEEECCCTT--CCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBC---STTS
T ss_pred CCCCCcEEEEeCCCCC--CCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCe---ECCc
Confidence 3456789999999999 999999999999999876 333 24568999999999999999999 99999 9999
Q ss_pred eEEEEeeecCC
Q 043011 91 FLHISYSVLED 101 (133)
Q Consensus 91 ~l~V~~a~~~~ 101 (133)
.|.|.++.++.
T Consensus 95 ~i~V~~a~~~~ 105 (124)
T 1wel_A 95 FIQVHPITKKG 105 (124)
T ss_dssp CBEEEEECHHH
T ss_pred EEEEEECCHHH
Confidence 99999997754
No 161
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=9.1e-20 Score=123.30 Aligned_cols=80 Identities=13% Similarity=0.131 Sum_probs=72.8
Q ss_pred CCCCCCeEEEeccCCCCCCCHHHHHHHhhcCCCe-eEEEEc----CCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCe
Q 043011 16 EDERSPNLFVANCGPAVGVSYEAIGSVFSAFGDV-KGIYAA----DDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANR 90 (133)
Q Consensus 16 ~~~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V-~~v~~~----~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr 90 (133)
...+.++|||+||+++ +|+++|+++|++||.| .+|.+. ++++|||||+|.+.++|++|+.. ||.. +.|+
T Consensus 11 ~~~~~~~l~V~nLp~~--~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~---~~gr 84 (114)
T 2cpy_A 11 VNSAKVCAHITNIPFS--ITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKK---LNGR 84 (114)
T ss_dssp CCSCCCEEEEESCCTT--SCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEE---ETTE
T ss_pred CCCCccEEEEeCcCCc--CCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCc---cCCe
Confidence 3457899999999999 9999999999999999 788874 45799999999999999999987 9999 9999
Q ss_pred eEEEEeeecCC
Q 043011 91 FLHISYSVLED 101 (133)
Q Consensus 91 ~l~V~~a~~~~ 101 (133)
.|.|.++.++.
T Consensus 85 ~i~v~~a~~~~ 95 (114)
T 2cpy_A 85 EAFVHVVTLED 95 (114)
T ss_dssp EEEEEEECHHH
T ss_pred EEEEEECCHHH
Confidence 99999998765
No 162
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.80 E-value=1.5e-19 Score=115.84 Aligned_cols=73 Identities=16% Similarity=0.200 Sum_probs=67.8
Q ss_pred CCCCCeEEEeccCCCCCCCHHHHHHHhhcC----C-------CeeEEEEcCCCCCeEEEEECCHHHHHHHHHHhcCCCCC
Q 043011 17 DERSPNLFVANCGPAVGVSYEAIGSVFSAF----G-------DVKGIYAADDSGARVIVSYFDEGSAQAAFNSLHSRPCP 85 (133)
Q Consensus 17 ~~~~~~L~V~Nl~~~~~vte~~L~~~F~~f----G-------~V~~v~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~~~ 85 (133)
..+.++|||+||+++ +++++|+++|++| | +|.++.+ .+.+|||||+|.+.++|++|+ .|||..
T Consensus 3 ~~~~~~l~V~nLp~~--~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~-~~~kg~afV~f~~~~~a~~A~-~l~g~~-- 76 (87)
T 2hzc_A 3 LGSARRLYVGNIPFG--ITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI-NQDKNFAFLEFRSVDETTQAM-AFDGII-- 76 (87)
T ss_dssp SGGGGEEEEESCCTT--CCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEE-CSSSSEEEEEESSHHHHHHHG-GGTTCE--
T ss_pred CCCCCEEEEeCCCCC--CCHHHHHHHHHHHhhhcccccCCCCcceEEEe-cCCCcEEEEEcCCHHHHHHHH-hcCCCE--
Confidence 356899999999999 9999999999999 8 9999998 456999999999999999999 999999
Q ss_pred CCCCeeEEEEe
Q 043011 86 DLANRFLHISY 96 (133)
Q Consensus 86 ~l~gr~l~V~~ 96 (133)
+.|+.|+|+.
T Consensus 77 -~~g~~l~V~r 86 (87)
T 2hzc_A 77 -FQGQSLKIRR 86 (87)
T ss_dssp -ETTEECEEEC
T ss_pred -ECCeEEEEeC
Confidence 9999999973
No 163
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.80 E-value=6e-19 Score=128.08 Aligned_cols=79 Identities=28% Similarity=0.314 Sum_probs=74.7
Q ss_pred CCCCCeEEEeccCCCCCCCHHHHHHHhhcCC-CeeEEEEcCCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCC-CeeEEE
Q 043011 17 DERSPNLFVANCGPAVGVSYEAIGSVFSAFG-DVKGIYAADDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLA-NRFLHI 94 (133)
Q Consensus 17 ~~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG-~V~~v~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~-gr~l~V 94 (133)
..++++|||+||+.+ +++++|+++|++|| +|.++.+..+.+|+|||+|.+.++|.+|+..|||+. +. |++|+|
T Consensus 117 ~~~~~~l~v~nl~~~--~~~~~l~~~f~~~G~~v~~v~i~~~~~g~afV~f~~~~~A~~A~~~l~g~~---~~~g~~l~v 191 (198)
T 1qm9_A 117 FPPSATLHLSNIPPS--VSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHD---LGENHHLRV 191 (198)
T ss_dssp CCCCCEEEECCCCTT--CCHHHHHHHHHHTTSCCCEEEESSTTSSCEEEECSSHHHHHHHHHHHTSSC---CSSCCSCCE
T ss_pred CCCccEEEEeCCCCC--CCHHHHHHHHHHcCCCceEEEEEeCCCcEEEEEeCCHHHHHHHHHHhcCCc---cCCCCeEEE
Confidence 457899999999999 99999999999999 999999977789999999999999999999999999 99 999999
Q ss_pred EeeecC
Q 043011 95 SYSVLE 100 (133)
Q Consensus 95 ~~a~~~ 100 (133)
.|++++
T Consensus 192 ~~a~~~ 197 (198)
T 1qm9_A 192 SFSKST 197 (198)
T ss_dssp EEECCC
T ss_pred Eeeccc
Confidence 999865
No 164
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.79 E-value=2e-19 Score=125.99 Aligned_cols=79 Identities=24% Similarity=0.317 Sum_probs=72.6
Q ss_pred CCCCCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEc-----CCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCe
Q 043011 16 EDERSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAA-----DDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANR 90 (133)
Q Consensus 16 ~~~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~-----~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr 90 (133)
...++.+|||+||+.+ +++++|+++|++||.|.++.+. +.++|||||+|.+.++|.+|++.|||.. +.|+
T Consensus 83 ~~~~~~~l~v~nl~~~--~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~---~~g~ 157 (166)
T 3md3_A 83 SSDDTFNLFVGDLNVN--VDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQD---LNGR 157 (166)
T ss_dssp CCTTCEEEEEESCCTT--CCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCE---ETTE
T ss_pred CCCCCceEEECCCCCC--CCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCc---cCCc
Confidence 4567889999999999 9999999999999999999874 3468999999999999999999999999 9999
Q ss_pred eEEEEeeec
Q 043011 91 FLHISYSVL 99 (133)
Q Consensus 91 ~l~V~~a~~ 99 (133)
+|+|+||.+
T Consensus 158 ~i~v~~a~~ 166 (166)
T 3md3_A 158 PLRINWAAK 166 (166)
T ss_dssp ECEEEESCC
T ss_pred EEEEEecCC
Confidence 999999863
No 165
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=4.6e-19 Score=115.67 Aligned_cols=78 Identities=22% Similarity=0.305 Sum_probs=68.7
Q ss_pred CCCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEcCCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCeeEEEEee
Q 043011 18 ERSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAADDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRFLHISYS 97 (133)
Q Consensus 18 ~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~l~V~~a 97 (133)
...++|||+||+++ +|+++|+++|++||+|.+|........||||+|.+.++|++|+. |||.. +.|+.|+|+++
T Consensus 6 ~~~~~l~V~nl~~~--~t~~~l~~~F~~~G~v~~v~~~~~~g~~afV~f~~~~~a~~ai~-l~g~~---~~g~~l~V~~a 79 (94)
T 2e5g_A 6 SGLRSVFVSGFPRG--VDSAQLSEYFLAFGPVASVVMDKDKGVFAIVEMGDVGAREAVLS-QSQHS---LGGHRLRVRPR 79 (94)
T ss_dssp TTCCEEEEECCCTT--CCHHHHHHHGGGTSCEEEEEECSSSCCEEEEEESSHHHHHHHHT-CSCCE---ETTEECCCBCS
T ss_pred CCCCEEEEECCCCC--CCHHHHHHHHHhcCCeEEEEEcCCCCcEEEEEECCHHHHHHHHh-cCCeE---ECCEEEEEEEC
Confidence 45789999999999 99999999999999999984422221299999999999999999 99999 99999999998
Q ss_pred ecCC
Q 043011 98 VLED 101 (133)
Q Consensus 98 ~~~~ 101 (133)
.++.
T Consensus 80 ~~~~ 83 (94)
T 2e5g_A 80 EQKE 83 (94)
T ss_dssp CCSC
T ss_pred CcCC
Confidence 7765
No 166
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.79 E-value=9.5e-20 Score=129.63 Aligned_cols=81 Identities=11% Similarity=0.183 Sum_probs=73.8
Q ss_pred CCCCCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEcCCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCeeEEEE
Q 043011 16 EDERSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAADDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRFLHIS 95 (133)
Q Consensus 16 ~~~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~l~V~ 95 (133)
...+.++|||+||+.+ +|+++|+++|++||+|..+...+.++|||||+|.+.++|.+|++.|||+. +.|+.|+|+
T Consensus 95 ~~~~~~~l~v~nlp~~--~t~~~l~~~F~~~g~v~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~---~~g~~i~v~ 169 (175)
T 1fje_B 95 KVRAARTLLAKNLSFN--ITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAE---IDGRSVSLY 169 (175)
T ss_dssp TTGGGGEEEEESCCSS--CCHHHHHHHCTTCSEEEEECSSSSCCSEEEEECSSHHHHHHHHHHHTEEE---ETTEEEEEE
T ss_pred ccccCCEEEEeCCCCC--CCHHHHHHHHHhcCeEEEecCCCCCceEEEEEECCHHHHHHHHHHhCCCE---ECCeEEEEE
Confidence 3456789999999999 99999999999999998883345789999999999999999999999999 999999999
Q ss_pred eeecCC
Q 043011 96 YSVLED 101 (133)
Q Consensus 96 ~a~~~~ 101 (133)
||.+++
T Consensus 170 ~a~~k~ 175 (175)
T 1fje_B 170 YTGEKG 175 (175)
T ss_dssp ECSSCC
T ss_pred ecCCCC
Confidence 998763
No 167
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.79 E-value=2e-19 Score=136.93 Aligned_cols=79 Identities=20% Similarity=0.262 Sum_probs=71.4
Q ss_pred CCCCCeEEEeccCCCCCC---------CHHHHHHHhhcCCCeeEEEEcCCCCCeEEEEECCHHHHHHHHHHhcCCCCCCC
Q 043011 17 DERSPNLFVANCGPAVGV---------SYEAIGSVFSAFGDVKGIYAADDSGARVIVSYFDEGSAQAAFNSLHSRPCPDL 87 (133)
Q Consensus 17 ~~~~~~L~V~Nl~~~~~v---------te~~L~~~F~~fG~V~~v~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l 87 (133)
..++++|||+||+.. + ++++|+++|++||+|.+|++. .+||||||+|.+.++|+.|+++|||+. +
T Consensus 131 ~~~~rtLfVgnL~~~--~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~-~~kG~AFV~F~~~~~Ae~A~~am~g~~---l 204 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGA--LNSKHLKPAQIESRIRFVFSRLGDIDRIRYV-ESKNCGFVKFKYQANAEFAKEAMSNQT---L 204 (240)
T ss_dssp CCCCCEEEEECTTGG--GTTCCCCHHHHHHHHHHHHHTTSCEEEEEEE-GGGTEEEEEESSHHHHHHHHHHHTTCC---C
T ss_pred ccCCceeecCCCChh--hhcccccccCcHHHHHHHHHccCCEEEEEEE-CCCCEEEEEeCCHHHHHHHHHHhCCCE---E
Confidence 456899999999999 8 799999999999999999984 579999999999999999999999999 8
Q ss_pred ------------CCeeEEEEeeecCC
Q 043011 88 ------------ANRFLHISYSVLED 101 (133)
Q Consensus 88 ------------~gr~l~V~~a~~~~ 101 (133)
.|+.|.|.||...+
T Consensus 205 ~~~~~~e~~~~~~gr~L~V~wA~~~p 230 (240)
T 3u1l_A 205 LLPSDKEWDDRREGTGLLVKWANEDP 230 (240)
T ss_dssp CCTTSTTGGGGGGSCCCEEEECC---
T ss_pred eccccccccccCCCCEEEEEEccCCC
Confidence 89999999998776
No 168
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.66 E-value=9.9e-21 Score=128.06 Aligned_cols=80 Identities=21% Similarity=0.345 Sum_probs=73.5
Q ss_pred CCCCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeE--------EEEc-----CCCCCeEEEEECCHHHHHHHHHHhcCCC
Q 043011 17 DERSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKG--------IYAA-----DDSGARVIVSYFDEGSAQAAFNSLHSRP 83 (133)
Q Consensus 17 ~~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~--------v~~~-----~~~kg~afV~f~~~~~A~~A~~~l~g~~ 83 (133)
..++++|||+||+.+ +++++|+++|++||.|.+ |.+. +.++|||||+|.+.++|++|++.|||..
T Consensus 4 ~~~~~~l~V~nLp~~--~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~ 81 (116)
T 2lcw_A 4 NSDNNTIFVQGLGEN--VTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKE 81 (116)
Confidence 457899999999999 999999999999999988 6663 3468999999999999999999999999
Q ss_pred CCCCCCeeEEEEeeecCC
Q 043011 84 CPDLANRFLHISYSVLED 101 (133)
Q Consensus 84 ~~~l~gr~l~V~~a~~~~ 101 (133)
+.|+.|+|+|+.++.
T Consensus 82 ---~~g~~l~V~~a~~~~ 96 (116)
T 2lcw_A 82 ---FSGNPIKVSFATRRA 96 (116)
Confidence 999999999999886
No 169
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.78 E-value=1.6e-18 Score=132.21 Aligned_cols=78 Identities=21% Similarity=0.257 Sum_probs=72.8
Q ss_pred CCCCCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEcCCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCC-CeeEEE
Q 043011 16 EDERSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAADDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLA-NRFLHI 94 (133)
Q Consensus 16 ~~~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~-gr~l~V 94 (133)
...++++|||+||+.+ +++++|+++|++||.|.+|.+....+|||||+|.+.++|.+|++.|||.. +. |+.|+|
T Consensus 203 ~~~~~~~l~v~nl~~~--~~~~~l~~~F~~~G~i~~v~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~---~~~g~~l~v 277 (282)
T 3pgw_A 203 ENPPNHILFLTNLPEE--TNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDALQGFK---ITQNNAMKI 277 (282)
T ss_pred CCCCCCEEEEeCCCCc--CCHHHHHHHHHhcCCeEEEEEecCCCcEEEEEeCCHHHHHHHHHHcCCcE---eCCCCEEEE
Confidence 3446799999999999 99999999999999999999976667999999999999999999999999 99 999999
Q ss_pred Eeee
Q 043011 95 SYSV 98 (133)
Q Consensus 95 ~~a~ 98 (133)
+|++
T Consensus 278 ~~ak 281 (282)
T 3pgw_A 278 SFAK 281 (282)
T ss_pred EEec
Confidence 9986
No 170
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.78 E-value=2.3e-18 Score=128.59 Aligned_cols=79 Identities=28% Similarity=0.314 Sum_probs=74.5
Q ss_pred CCCCCeEEEeccCCCCCCCHHHHHHHhhcCC-CeeEEEEcCCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCC-CeeEEE
Q 043011 17 DERSPNLFVANCGPAVGVSYEAIGSVFSAFG-DVKGIYAADDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLA-NRFLHI 94 (133)
Q Consensus 17 ~~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG-~V~~v~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~-gr~l~V 94 (133)
..++++|||+||+++ +++++|+++|++|| +|.+|.+..+++|||||+|.+.++|.+|++.|||.. +. |+.|+|
T Consensus 148 ~~~~~~l~V~nlp~~--~t~~~l~~~f~~~G~~i~~v~i~~~~~g~afV~f~~~~~A~~Ai~~l~g~~---~~~g~~l~v 222 (229)
T 2adc_A 148 FPPSATLHLSNIPPS--VSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHD---LGENHHLRV 222 (229)
T ss_dssp CCSCSEEEEECCCTT--CCHHHHHHHHHTTSCCEEEEEECSSSTTCEEEEESSHHHHHHHHHHHTTCB---SSSSCBCEE
T ss_pred CCCCCEEEEeCCCcc--CCHHHHHHHHHHcCCCeeEEEEEECCCcEEEEEECCHHHHHHHHHHHCCCc---cCCCCeEEE
Confidence 456899999999999 99999999999999 999999966789999999999999999999999999 99 999999
Q ss_pred EeeecC
Q 043011 95 SYSVLE 100 (133)
Q Consensus 95 ~~a~~~ 100 (133)
+|++++
T Consensus 223 ~~a~~~ 228 (229)
T 2adc_A 223 SFSKST 228 (229)
T ss_dssp EECSSC
T ss_pred EEecCC
Confidence 999865
No 171
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.78 E-value=2.5e-19 Score=122.08 Aligned_cols=79 Identities=13% Similarity=0.124 Sum_probs=71.5
Q ss_pred CCCCCeEEEeccCCCCCCCHHHHHHHhhcCCC---eeEEEEc----CCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCC
Q 043011 17 DERSPNLFVANCGPAVGVSYEAIGSVFSAFGD---VKGIYAA----DDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLAN 89 (133)
Q Consensus 17 ~~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~---V~~v~~~----~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~g 89 (133)
....++|||+||+++ +|+++|+++|++||. |.+|++. ++++|||||+|.+.++|++|++ |||+. +.|
T Consensus 14 ~~~~~~l~V~nLp~~--~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~---~~g 87 (118)
T 2db1_A 14 GGEGYVVKLRGLPWS--CSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRES---MGH 87 (118)
T ss_dssp BCCCCEEEEESCCTT--CCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEE---ETT
T ss_pred CCCCcEEEEeCCCCC--CCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCe---ECC
Confidence 356789999999999 999999999999999 8888874 3568999999999999999999 99999 999
Q ss_pred eeEEEEeeecCC
Q 043011 90 RFLHISYSVLED 101 (133)
Q Consensus 90 r~l~V~~a~~~~ 101 (133)
|.|+|.++.+++
T Consensus 88 r~i~V~~a~~~~ 99 (118)
T 2db1_A 88 RYIEVFKSHRTE 99 (118)
T ss_dssp EEEEEEEECHHH
T ss_pred eEEEEEECCHHH
Confidence 999999997654
No 172
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.78 E-value=1.3e-19 Score=113.18 Aligned_cols=70 Identities=17% Similarity=0.316 Sum_probs=64.7
Q ss_pred eEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEc-----CCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCeeEEEEe
Q 043011 22 NLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAA-----DDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRFLHISY 96 (133)
Q Consensus 22 ~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~-----~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~l~V~~ 96 (133)
+|||+|||++ +++++|+++|++||+|.++.+. +.++|||||+|.+.++|++|++. +|.. +.|+.|+|++
T Consensus 1 ~l~v~nLp~~--~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~---~~g~~l~v~~ 74 (75)
T 1iqt_A 1 KIFVGGLSPD--TPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHN---VGLSKCEIKV 74 (75)
T ss_dssp CEEESCCCSS--CCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCC---BTTBCCCEEE
T ss_pred CEEEeCCCCC--CCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCe---ECCEEEEEEE
Confidence 6999999999 9999999999999999999874 34689999999999999999985 8888 9999999987
Q ss_pred e
Q 043011 97 S 97 (133)
Q Consensus 97 a 97 (133)
|
T Consensus 75 a 75 (75)
T 1iqt_A 75 A 75 (75)
T ss_dssp C
T ss_pred C
Confidence 5
No 173
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.78 E-value=2.3e-19 Score=120.04 Aligned_cols=80 Identities=16% Similarity=0.116 Sum_probs=72.4
Q ss_pred CCCCCCeEEEeccCCCCCCCHHHHHHHhhcCCC---eeEEEEc----CCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCC
Q 043011 16 EDERSPNLFVANCGPAVGVSYEAIGSVFSAFGD---VKGIYAA----DDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLA 88 (133)
Q Consensus 16 ~~~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~---V~~v~~~----~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~ 88 (133)
......+|||+||+++ +|+++|+++|++||. |.+|.+. ++++|||||+|.+.++|++|++ +||.. ++
T Consensus 7 ~~~~~~~l~V~nLp~~--~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~---~~ 80 (107)
T 2lmi_A 7 EVDDVFLIRAQGLPWS--CTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMY---MG 80 (107)
T ss_dssp CCSSCCEEEEECCCSS--CCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCC---SS
T ss_pred CCCCccEEEEeCCCCC--CCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcce---eC
Confidence 4456889999999999 999999999999998 8889875 3578999999999999999999 99999 99
Q ss_pred CeeEEEEeeecCC
Q 043011 89 NRFLHISYSVLED 101 (133)
Q Consensus 89 gr~l~V~~a~~~~ 101 (133)
||.|+|.++.+++
T Consensus 81 gr~i~V~~a~~~~ 93 (107)
T 2lmi_A 81 QRYVEVYEINNED 93 (107)
T ss_dssp SSCCCCEECCHHH
T ss_pred CeEEEEEECCHHH
Confidence 9999999987654
No 174
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=7.2e-19 Score=117.18 Aligned_cols=79 Identities=10% Similarity=0.126 Sum_probs=69.9
Q ss_pred CCCCCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEc----CCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCee
Q 043011 16 EDERSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAA----DDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRF 91 (133)
Q Consensus 16 ~~~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~----~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~ 91 (133)
...+..+|||+||+++ +|++||+++|++||.+ +|.+. ++++|||||+|.+.++|++|+ .+|++. +.||.
T Consensus 11 ~~~~~~~l~V~nLp~~--~te~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~---~~gr~ 83 (102)
T 1wez_A 11 QSTTGHCVHMRGLPYR--ATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAM-AKDKAN---MQHRY 83 (102)
T ss_dssp CCSSSCEEEEESCCTT--CCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHH-TTSSCC---SSSSC
T ss_pred CCCCCCEEEEeCCCCC--CCHHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHH-HhCCCe---ECCcE
Confidence 3456789999999999 9999999999999955 88774 356899999999999999999 579999 99999
Q ss_pred EEEEeeecCC
Q 043011 92 LHISYSVLED 101 (133)
Q Consensus 92 l~V~~a~~~~ 101 (133)
|+|..+.+..
T Consensus 84 i~V~~~~~~~ 93 (102)
T 1wez_A 84 VELFLNSTAG 93 (102)
T ss_dssp CEEEEECCCC
T ss_pred EEEEECCCCC
Confidence 9999987765
No 175
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.77 E-value=3.4e-19 Score=134.34 Aligned_cols=77 Identities=17% Similarity=0.144 Sum_probs=70.2
Q ss_pred CCCeEEEeccCCCCCCCHHHHHHHhhcCC--CeeEEEEc-----CCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCee
Q 043011 19 RSPNLFVANCGPAVGVSYEAIGSVFSAFG--DVKGIYAA-----DDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRF 91 (133)
Q Consensus 19 ~~~~L~V~Nl~~~~~vte~~L~~~F~~fG--~V~~v~~~-----~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~ 91 (133)
...+|||+||+++ +|+++|+++|++|| +|.+|.+. +++||||||+|.+.++|++|++.|||+. |.|+.
T Consensus 67 ~~~~lfVgnL~~~--~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~---~~Gr~ 141 (229)
T 3q2s_C 67 KRIALYIGNLTWW--TTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRE---LHGQN 141 (229)
T ss_dssp --CEEEEESCCTT--CCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSC---BTTBC
T ss_pred CccEEEEeCCCCC--CCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCe---ECCEE
Confidence 4678999999999 99999999999999 99999873 3578999999999999999999999999 99999
Q ss_pred EEEEeeecC
Q 043011 92 LHISYSVLE 100 (133)
Q Consensus 92 l~V~~a~~~ 100 (133)
|+|+++.++
T Consensus 142 l~V~~a~~~ 150 (229)
T 3q2s_C 142 PVVTPVNKQ 150 (229)
T ss_dssp CEEEECCHH
T ss_pred eEEEECCCC
Confidence 999998764
No 176
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.77 E-value=1.2e-18 Score=117.14 Aligned_cols=82 Identities=17% Similarity=0.156 Sum_probs=70.5
Q ss_pred CCCCCeEEEeccCCCCC---CCHHHHHHHhhcCCCeeEEEEc------CCCCCeEEEEECCHHHHHHHHHHhcCCCCCCC
Q 043011 17 DERSPNLFVANCGPAVG---VSYEAIGSVFSAFGDVKGIYAA------DDSGARVIVSYFDEGSAQAAFNSLHSRPCPDL 87 (133)
Q Consensus 17 ~~~~~~L~V~Nl~~~~~---vte~~L~~~F~~fG~V~~v~~~------~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l 87 (133)
..|+++|+|.|+-.... -++++|++.|++||+|.+|.+. ++++|||||+|.+.++|++|++.|||+. +
T Consensus 5 ~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~---~ 81 (105)
T 2pe8_A 5 KCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRY---F 81 (105)
T ss_dssp GSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCE---E
T ss_pred CCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCE---E
Confidence 46899999999963101 3689999999999999999884 2468999999999999999999999999 9
Q ss_pred CCeeEEEEeeecCC
Q 043011 88 ANRFLHISYSVLED 101 (133)
Q Consensus 88 ~gr~l~V~~a~~~~ 101 (133)
.||.|+|+|+.+..
T Consensus 82 ~Gr~i~v~~a~~~~ 95 (105)
T 2pe8_A 82 GGRVVKACFYNLDK 95 (105)
T ss_dssp TTEECEEEECCHHH
T ss_pred CCcEEEEEEcCHHH
Confidence 99999999997643
No 177
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.77 E-value=6.2e-19 Score=130.35 Aligned_cols=78 Identities=19% Similarity=0.284 Sum_probs=72.2
Q ss_pred CCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEc---CCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCeeEEEE
Q 043011 19 RSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAA---DDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRFLHIS 95 (133)
Q Consensus 19 ~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~---~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~l~V~ 95 (133)
...+|||+||+++ +|+++|+++|++||+|.++.+. ..++|||||+|.+.++|++|++.|||+. +.|++|+|+
T Consensus 102 ~~~~l~v~nl~~~--~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~lng~~---~~g~~i~V~ 176 (213)
T 4f02_A 102 GVGNIFIKNLDKS--IDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGML---LNDRKVFVG 176 (213)
T ss_dssp CTTEEEEESCCTT--CCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHTTCE---ETTEECEEE
T ss_pred ccccceECCcccc--cHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHHHHHHHHHhCCCE---ECCEEEEEE
Confidence 4679999999999 9999999999999999999874 2368999999999999999999999999 999999999
Q ss_pred eeecCC
Q 043011 96 YSVLED 101 (133)
Q Consensus 96 ~a~~~~ 101 (133)
|+.++.
T Consensus 177 ~a~~~~ 182 (213)
T 4f02_A 177 RFKSRK 182 (213)
T ss_dssp ECCCHH
T ss_pred EcCCCc
Confidence 998764
No 178
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=5e-18 Score=114.43 Aligned_cols=81 Identities=15% Similarity=0.133 Sum_probs=71.2
Q ss_pred CCCCCCeEEEeccCCCCCCC-----------HHHHHHHhhcCCCeeEEEEc-CCCCCeEEEEECCHHHHHHHHHHhcCCC
Q 043011 16 EDERSPNLFVANCGPAVGVS-----------YEAIGSVFSAFGDVKGIYAA-DDSGARVIVSYFDEGSAQAAFNSLHSRP 83 (133)
Q Consensus 16 ~~~~~~~L~V~Nl~~~~~vt-----------e~~L~~~F~~fG~V~~v~~~-~~~kg~afV~f~~~~~A~~A~~~l~g~~ 83 (133)
...++++|+|.||-.. .+ +++|+++|++||+|.+|.+. ..++|||||+|.+.++|++|++.|||+.
T Consensus 11 ~~~~s~~l~l~Nl~~~--~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~ 88 (112)
T 2dit_A 11 RMRHERVVIIKNMFHP--MDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRW 88 (112)
T ss_dssp CCCSCCEEEEESSCCT--THHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCE
T ss_pred CCCCceEEEEEcCCCH--HHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCE
Confidence 3457999999999544 32 58999999999999999874 3479999999999999999999999999
Q ss_pred CCCCCCeeEEEEeeecCC
Q 043011 84 CPDLANRFLHISYSVLED 101 (133)
Q Consensus 84 ~~~l~gr~l~V~~a~~~~ 101 (133)
+.||+|+|+|+.++.
T Consensus 89 ---~~gr~l~v~~a~~~~ 103 (112)
T 2dit_A 89 ---FGGRQITAQAWDGTT 103 (112)
T ss_dssp ---ETTEECEEEECCSCC
T ss_pred ---ECCcEEEEEEeCCCC
Confidence 999999999998875
No 179
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.77 E-value=3.3e-19 Score=125.04 Aligned_cols=79 Identities=11% Similarity=0.103 Sum_probs=71.2
Q ss_pred CCCCCeEEEeccCCCCCCCHHHHHHHhhcCCC---eeEEEEc----CCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCC
Q 043011 17 DERSPNLFVANCGPAVGVSYEAIGSVFSAFGD---VKGIYAA----DDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLAN 89 (133)
Q Consensus 17 ~~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~---V~~v~~~----~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~g 89 (133)
.....+|||+||+++ +|+++|+++|++||. |.+|++. ++++|||||+|.+.++|++|++ |||+. +.|
T Consensus 41 ~~~~~~lfVgnLp~~--~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~---l~g 114 (136)
T 2hgl_A 41 GGEGFVVKLRGLPWS--CSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRES---MGH 114 (136)
T ss_dssp CCTTCEEEEESCCTT--CCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEE---SSS
T ss_pred CCCCCEEEEeCCCCC--CCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCE---ECC
Confidence 345789999999999 999999999999999 7888774 3568999999999999999999 99999 999
Q ss_pred eeEEEEeeecCC
Q 043011 90 RFLHISYSVLED 101 (133)
Q Consensus 90 r~l~V~~a~~~~ 101 (133)
|.|.|.++.+++
T Consensus 115 r~i~V~~a~~~e 126 (136)
T 2hgl_A 115 RYIEVFKSHRTE 126 (136)
T ss_dssp SEEEEEECCHHH
T ss_pred EEEEEEECChHH
Confidence 999999986654
No 180
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.77 E-value=2.2e-18 Score=125.91 Aligned_cols=79 Identities=25% Similarity=0.343 Sum_probs=73.4
Q ss_pred CCCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEcC-----CCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCeeE
Q 043011 18 ERSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAAD-----DSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRFL 92 (133)
Q Consensus 18 ~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~~-----~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~l 92 (133)
.+.++|||+||+.+ +|+++|+++|++||+|.++.+.. +++|||||+|.+.++|.+|++.|||.. ++|+.|
T Consensus 123 ~~~~~l~v~nlp~~--~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~---~~g~~i 197 (216)
T 2qfj_A 123 RAFNRIYVASVHQD--LSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFD---LGGQYL 197 (216)
T ss_dssp TTSCEEEEECCCTT--CCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCB---CSSSBC
T ss_pred CCCcEEEEeCCCCc--CCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCE---eCCcEE
Confidence 45689999999999 99999999999999999998842 358999999999999999999999999 999999
Q ss_pred EEEeeecCC
Q 043011 93 HISYSVLED 101 (133)
Q Consensus 93 ~V~~a~~~~ 101 (133)
+|+|+.++.
T Consensus 198 ~V~~a~~~~ 206 (216)
T 2qfj_A 198 RVGKAVTPP 206 (216)
T ss_dssp EEEECSSCS
T ss_pred EEEEecCCC
Confidence 999999886
No 181
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.76 E-value=9.4e-19 Score=123.71 Aligned_cols=77 Identities=17% Similarity=0.281 Sum_probs=69.2
Q ss_pred CCCCCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEcC----CCCCeEEEEECCHHHHHHHHHHhcCCCCCCCC---
Q 043011 16 EDERSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAAD----DSGARVIVSYFDEGSAQAAFNSLHSRPCPDLA--- 88 (133)
Q Consensus 16 ~~~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~~----~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~--- 88 (133)
...+.++|||+||+++ +|+++|+++|++||+|.++.+.. .++|||||+|.+.++|.+|++.|||.. +.
T Consensus 91 ~~~~~~~l~v~nl~~~--~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~---~~~g~ 165 (175)
T 3nmr_A 91 NAVEDRKLFIGMISKK--CTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQ---TMEGC 165 (175)
T ss_dssp SCGGGSEEEEESCCTT--CCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSC---CCTTC
T ss_pred ccCCCCeEEEcCCCCc--CCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCc---ccCCC
Confidence 3446789999999999 99999999999999999998843 358999999999999999999999988 55
Q ss_pred CeeEEEEee
Q 043011 89 NRFLHISYS 97 (133)
Q Consensus 89 gr~l~V~~a 97 (133)
+++|+|+||
T Consensus 166 ~~~l~V~~a 174 (175)
T 3nmr_A 166 SSPMVVKFA 174 (175)
T ss_dssp SSCCEEEEC
T ss_pred CCCeEEEec
Confidence 599999997
No 182
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.76 E-value=1e-18 Score=123.05 Aligned_cols=77 Identities=17% Similarity=0.242 Sum_probs=71.1
Q ss_pred CCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEc-----CCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCeeEE
Q 043011 19 RSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAA-----DDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRFLH 93 (133)
Q Consensus 19 ~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~-----~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~l~ 93 (133)
+.++|||+||+++ +++++|+++|++||+|.++.+. +.++|||||+|.+.++|.+|++ +||.. +.|++|+
T Consensus 86 ~~~~l~V~nlp~~--~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~---~~g~~i~ 159 (167)
T 2cjk_A 86 KTGKIFVGGIGPD--VRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFID---FKDRKIE 159 (167)
T ss_dssp HCEEEEEEEECTT--CCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEEC---SSSSCEE
T ss_pred CCCeEEECCCCCC--CCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEE---eCCeEEE
Confidence 4679999999999 9999999999999999999874 3468999999999999999998 89999 9999999
Q ss_pred EEeeecCC
Q 043011 94 ISYSVLED 101 (133)
Q Consensus 94 V~~a~~~~ 101 (133)
|.||.|++
T Consensus 160 V~~a~pk~ 167 (167)
T 2cjk_A 160 IKRAEPRH 167 (167)
T ss_dssp EEECCCCC
T ss_pred EeecCCCC
Confidence 99998863
No 183
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.76 E-value=3.3e-18 Score=123.46 Aligned_cols=80 Identities=15% Similarity=0.273 Sum_probs=73.8
Q ss_pred CCCCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEcC-----CCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCee
Q 043011 17 DERSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAAD-----DSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRF 91 (133)
Q Consensus 17 ~~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~~-----~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~ 91 (133)
..+.++|||+||+.+ +++++|+++|++||+|.++.+.. .++|||||+|.+.++|++|++.|||.. +.|+.
T Consensus 111 ~~~~~~l~v~nl~~~--~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~---~~g~~ 185 (198)
T 2yh0_A 111 PDSAHKLFIGGLPNY--LNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQ---LGDKK 185 (198)
T ss_dssp SCCCCEEEEECCCTT--CCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCE---ETTEE
T ss_pred CCCCCEEEEeCCCCC--CCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCE---ECCEE
Confidence 357899999999999 99999999999999999998843 348999999999999999999999999 99999
Q ss_pred EEEEeeecCC
Q 043011 92 LHISYSVLED 101 (133)
Q Consensus 92 l~V~~a~~~~ 101 (133)
|+|+|+.++.
T Consensus 186 l~v~~a~~~~ 195 (198)
T 2yh0_A 186 LLVQRASVGA 195 (198)
T ss_dssp CEEEESCCCC
T ss_pred EEEEECCCCC
Confidence 9999998875
No 184
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.76 E-value=1.1e-18 Score=123.34 Aligned_cols=76 Identities=16% Similarity=0.270 Sum_probs=70.2
Q ss_pred CCCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEcC-----CCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCeeE
Q 043011 18 ERSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAAD-----DSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRFL 92 (133)
Q Consensus 18 ~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~~-----~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~l 92 (133)
...++|||+||+++ +|+++|+++|++||+|.++.+.. .++|||||+|.+.++|.+|++.|||.. ++|++|
T Consensus 92 ~~~~~l~v~nlp~~--~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~---~~g~~l 166 (172)
T 2g4b_A 92 PGAHKLFIGGLPNY--LNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQ---LGDKKL 166 (172)
T ss_dssp TTTTCEEEECCCTT--CCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCE---ETTEEC
T ss_pred CCCCEEEEEcCCCc--CCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCE---ECCeEE
Confidence 45799999999999 99999999999999999998843 348999999999999999999999999 999999
Q ss_pred EEEeee
Q 043011 93 HISYSV 98 (133)
Q Consensus 93 ~V~~a~ 98 (133)
.|+||.
T Consensus 167 ~V~~As 172 (172)
T 2g4b_A 167 LVQRAS 172 (172)
T ss_dssp EEEECC
T ss_pred EEEeCC
Confidence 999973
No 185
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.76 E-value=2e-18 Score=121.48 Aligned_cols=77 Identities=18% Similarity=0.305 Sum_probs=69.9
Q ss_pred CCCCCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEcC-----CCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCC-
Q 043011 16 EDERSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAAD-----DSGARVIVSYFDEGSAQAAFNSLHSRPCPDLAN- 89 (133)
Q Consensus 16 ~~~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~~-----~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~g- 89 (133)
...+.++|||+||+.+ +++++|+++|++||+|.++.+.. .++|||||+|.+.++|.+|++.|||.. +.|
T Consensus 85 ~~~~~~~l~v~nl~~~--~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~---~~g~ 159 (168)
T 1b7f_A 85 ESIKDTNLYVTNLPRT--ITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVI---PEGG 159 (168)
T ss_dssp STTTTCEEEEESCCTT--CCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCC---CTTC
T ss_pred ccCCCCCEEEeCCCCC--CCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCE---ecCC
Confidence 3456799999999999 99999999999999999998742 347999999999999999999999999 977
Q ss_pred -eeEEEEee
Q 043011 90 -RFLHISYS 97 (133)
Q Consensus 90 -r~l~V~~a 97 (133)
++|+|+||
T Consensus 160 ~~~l~V~~A 168 (168)
T 1b7f_A 160 SQPLSVRLA 168 (168)
T ss_dssp SSCCEEEEC
T ss_pred CeEEEEEeC
Confidence 99999986
No 186
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.76 E-value=4e-19 Score=117.31 Aligned_cols=78 Identities=17% Similarity=0.245 Sum_probs=71.2
Q ss_pred CCCCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEc----CCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCeeE
Q 043011 17 DERSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAA----DDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRFL 92 (133)
Q Consensus 17 ~~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~----~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~l 92 (133)
..++++|||+||+++ +++++|+++|++||+|.++.+. +.++|||||+|.+.++|++|++ +|.. +.|+.|
T Consensus 6 ~~~~~~l~V~nLp~~--~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~---~~g~~l 78 (102)
T 2xs2_A 6 KIMPNTVFVGGIDVR--MDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQIN---FHGKKL 78 (102)
T ss_dssp EEEEEEEEEECCCTT--CCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCE---ETTEEC
T ss_pred CCCCCEEEEeCCCCC--CCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCe---ECCEEE
Confidence 345789999999999 9999999999999999999884 3468999999999999999999 9999 999999
Q ss_pred EEEeeecCC
Q 043011 93 HISYSVLED 101 (133)
Q Consensus 93 ~V~~a~~~~ 101 (133)
.|.++.++.
T Consensus 79 ~v~~a~~~~ 87 (102)
T 2xs2_A 79 KLGPAIRKQ 87 (102)
T ss_dssp EEEEEEECC
T ss_pred EEEECCcCc
Confidence 999998776
No 187
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.75 E-value=4.9e-18 Score=138.71 Aligned_cols=80 Identities=15% Similarity=0.249 Sum_probs=74.2
Q ss_pred CCCCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEc-----CCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCee
Q 043011 17 DERSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAA-----DDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRF 91 (133)
Q Consensus 17 ~~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~-----~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~ 91 (133)
..+.++|||+||++. +|+++|+++|++||.|.+|.+. +.++|||||+|.+.++|.+|+..|||.. |.|+.
T Consensus 99 ~~~~~~lfV~nL~~~--~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~---i~gr~ 173 (437)
T 3pgw_S 99 GDAFKTLFVARVNYD--TTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKK---IDGRR 173 (437)
T ss_pred CCCCCEEEEeCCCCC--CCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCE---ECCEE
Confidence 456789999999999 9999999999999999999884 3469999999999999999999999999 99999
Q ss_pred EEEEeeecCC
Q 043011 92 LHISYSVLED 101 (133)
Q Consensus 92 l~V~~a~~~~ 101 (133)
|.|+|+.++.
T Consensus 174 i~V~~a~~~~ 183 (437)
T 3pgw_S 174 VLVDVERGRT 183 (437)
T ss_pred EEEEEeCCCC
Confidence 9999998765
No 188
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.75 E-value=3.1e-18 Score=120.00 Aligned_cols=76 Identities=14% Similarity=0.241 Sum_probs=68.5
Q ss_pred CCCCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEcC-----CCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCee
Q 043011 17 DERSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAAD-----DSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRF 91 (133)
Q Consensus 17 ~~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~~-----~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~ 91 (133)
..+.++|||+||+.+ +++++|+++|++||+|.++.+.. .++|||||+|.+.++|.+|++.|||+. +.|+.
T Consensus 85 ~~~~~~l~v~nl~~~--~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~---~~g~~ 159 (167)
T 1fxl_A 85 SIRDANLYVSGLPKT--MTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQK---PSGAT 159 (167)
T ss_dssp GGTTCEEEEESCCTT--CCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCC---CTTCS
T ss_pred cCCCCcEEECCCCCc--CCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCc---cCCCc
Confidence 346789999999999 99999999999999999998742 358999999999999999999999999 99975
Q ss_pred --EEEEee
Q 043011 92 --LHISYS 97 (133)
Q Consensus 92 --l~V~~a 97 (133)
|+|+||
T Consensus 160 ~~i~v~~A 167 (167)
T 1fxl_A 160 EPITVKFA 167 (167)
T ss_dssp SCCEEEEC
T ss_pred cceEEEeC
Confidence 888886
No 189
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=8.9e-18 Score=113.42 Aligned_cols=74 Identities=18% Similarity=0.220 Sum_probs=62.1
Q ss_pred CCCCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEc--------CCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCC
Q 043011 17 DERSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAA--------DDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLA 88 (133)
Q Consensus 17 ~~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~--------~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~ 88 (133)
...+++|||+||+++ +|+++|+++|++||+|. +.+. ++++|||||+|.+.++|++|++.|++ +.
T Consensus 5 ~~~~~~lfVgnLp~~--~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~-----~~ 76 (114)
T 2dnl_A 5 SSGSRKVFVGGLPPD--IDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLE-----ED 76 (114)
T ss_dssp SSCCCCEEEECCCTT--CCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEE-----ET
T ss_pred CCCCCEEEEcCCCCC--CCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhh-----cC
Confidence 356799999999999 99999999999999999 6653 35699999999999999999999943 45
Q ss_pred CeeEEEEeee
Q 043011 89 NRFLHISYSV 98 (133)
Q Consensus 89 gr~l~V~~a~ 98 (133)
|+.+.+..+.
T Consensus 77 G~~~~~~~~~ 86 (114)
T 2dnl_A 77 GKLYLCVSSP 86 (114)
T ss_dssp TEEEEEECCS
T ss_pred CcEEEeccCC
Confidence 6666665443
No 190
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.74 E-value=4.6e-18 Score=135.38 Aligned_cols=82 Identities=20% Similarity=0.236 Sum_probs=69.2
Q ss_pred CCCCCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEcCCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCe--eEE
Q 043011 16 EDERSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAADDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANR--FLH 93 (133)
Q Consensus 16 ~~~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr--~l~ 93 (133)
...|+++|||+|++...++|+++|+++|++||+|.+|.+ ..+||||||+|.+.++|++|+++|||+++....|+ .|.
T Consensus 14 ~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~-~~~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ly 92 (345)
T 3tht_A 14 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLM-PPNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLY 92 (345)
T ss_dssp CSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEEC-CTTCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECE
T ss_pred cCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEE-eCCCCEEEEEECCHHHHHHHHHHhCCCccccccCCceEEE
Confidence 578999999999643333999999999999999999988 45899999999999999999999999984333456 577
Q ss_pred EEeee
Q 043011 94 ISYSV 98 (133)
Q Consensus 94 V~~a~ 98 (133)
+.|+.
T Consensus 93 ~~~~~ 97 (345)
T 3tht_A 93 LNFVE 97 (345)
T ss_dssp EEECS
T ss_pred EEEee
Confidence 78874
No 191
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=6.5e-18 Score=114.22 Aligned_cols=75 Identities=9% Similarity=0.136 Sum_probs=68.2
Q ss_pred CCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEc----CCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCeeEEEE
Q 043011 20 SPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAA----DDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRFLHIS 95 (133)
Q Consensus 20 ~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~----~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~l~V~ 95 (133)
..+|||+||+++ +|+++|+++|++| .|.+|.+. ++++|||||+|.+.++|++|+ .+||+. ++||.|.|.
T Consensus 16 ~~~v~V~nLp~~--~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~---~~gr~i~V~ 88 (109)
T 2dnn_A 16 DLYVSVHGMPFS--AMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRML---MIQRYVEVS 88 (109)
T ss_dssp HHEEEEECCCSS--CCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEE---ETTEEEEEE
T ss_pred CCEEEEeCCCCC--CCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCe---ECCeEEEEE
Confidence 579999999999 9999999999999 89999985 357899999999999999999 799999 999999998
Q ss_pred eeecCC
Q 043011 96 YSVLED 101 (133)
Q Consensus 96 ~a~~~~ 101 (133)
.+.++.
T Consensus 89 ~a~~~~ 94 (109)
T 2dnn_A 89 PATERQ 94 (109)
T ss_dssp ECCHHH
T ss_pred ECCccc
Confidence 876543
No 192
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.74 E-value=1.2e-18 Score=122.61 Aligned_cols=77 Identities=12% Similarity=0.107 Sum_probs=69.7
Q ss_pred CCCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEc----CCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCeeEE
Q 043011 18 ERSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAA----DDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRFLH 93 (133)
Q Consensus 18 ~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~----~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~l~ 93 (133)
...++|||+||+++ +|+++|+++|++|| |.+|.+. ++++|||||+|.+.++|++|+ .+|++. +.||.|+
T Consensus 44 ~~~~~lfV~nLp~~--~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~---l~gR~i~ 116 (139)
T 2hgn_A 44 TTGHCVHMRGLPYK--ATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRAN---MQHRYIE 116 (139)
T ss_dssp -CCCCEECCSCCTT--CCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCS---SSSCCCC
T ss_pred CCCCEEEEeCCCCC--CCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCE---ECCEEEE
Confidence 45789999999999 99999999999999 6788874 357899999999999999999 899999 9999999
Q ss_pred EEeeecCC
Q 043011 94 ISYSVLED 101 (133)
Q Consensus 94 V~~a~~~~ 101 (133)
|..+.+++
T Consensus 117 V~~a~~~~ 124 (139)
T 2hgn_A 117 LFLNSTTG 124 (139)
T ss_dssp CEECCCSC
T ss_pred EEECCCCC
Confidence 99988775
No 193
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.73 E-value=8.8e-18 Score=116.46 Aligned_cols=77 Identities=17% Similarity=0.246 Sum_probs=67.9
Q ss_pred CCCCCeEEEeccCCCCCCCHHHHHHHhhcCCCee--EEEEc----CCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCe
Q 043011 17 DERSPNLFVANCGPAVGVSYEAIGSVFSAFGDVK--GIYAA----DDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANR 90 (133)
Q Consensus 17 ~~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~--~v~~~----~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr 90 (133)
..+..+|||+||+++ +|+++|+++|++| .|. +|.+. ++++|||||+|.+.++|++|++. +++. ++||
T Consensus 39 ~~~~~~lfVgnLp~~--~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~-~~~~---l~gR 111 (126)
T 2hgm_A 39 SANDGFVRLRGLPFG--CTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGK-HKER---IGHR 111 (126)
T ss_dssp SSSCCEEEEECCCTT--CCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTT-TTCC---BTTB
T ss_pred CCCCCEEEEeCCCCC--CCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHH-CCCE---ECCE
Confidence 346789999999999 9999999999999 566 88874 35789999999999999999985 7788 9999
Q ss_pred eEEEEeeecC
Q 043011 91 FLHISYSVLE 100 (133)
Q Consensus 91 ~l~V~~a~~~ 100 (133)
.|.|..+.++
T Consensus 112 ~I~V~~a~~~ 121 (126)
T 2hgm_A 112 YIEVFKSSQE 121 (126)
T ss_dssp CCCCEEECHH
T ss_pred EEEEEECCHH
Confidence 9999988654
No 194
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.73 E-value=1.3e-17 Score=112.01 Aligned_cols=81 Identities=21% Similarity=0.231 Sum_probs=68.8
Q ss_pred CCCCCeEEEeccCCCCCCC--------HHHHHHHhhcCCCeeEEEEcC-------CCCCeEEEEECCHHHHHHHHHHhcC
Q 043011 17 DERSPNLFVANCGPAVGVS--------YEAIGSVFSAFGDVKGIYAAD-------DSGARVIVSYFDEGSAQAAFNSLHS 81 (133)
Q Consensus 17 ~~~~~~L~V~Nl~~~~~vt--------e~~L~~~F~~fG~V~~v~~~~-------~~kg~afV~f~~~~~A~~A~~~l~g 81 (133)
..|++.|.+.|+-....+. ++||++.|++||+|.+|.+.. +++|+|||+|.+.++|.+|+++|||
T Consensus 2 g~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG 81 (105)
T 3v4m_A 2 GHPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTG 81 (105)
T ss_dssp CSCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCC
Confidence 4689999999983211143 368999999999999999853 3589999999999999999999999
Q ss_pred CCCCCCCCeeEEEEeeecC
Q 043011 82 RPCPDLANRFLHISYSVLE 100 (133)
Q Consensus 82 ~~~~~l~gr~l~V~~a~~~ 100 (133)
+. +.||+|+|+|+...
T Consensus 82 ~~---f~GR~i~v~~~~~~ 97 (105)
T 3v4m_A 82 RK---FANRVVVTKYCDPD 97 (105)
T ss_dssp CE---ETTEECEEEEECHH
T ss_pred CE---eCCCEEEEEEeCHH
Confidence 99 99999999998654
No 195
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.72 E-value=1.7e-17 Score=119.48 Aligned_cols=79 Identities=10% Similarity=0.153 Sum_probs=68.9
Q ss_pred CCCCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEc-----CCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCee
Q 043011 17 DERSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAA-----DDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRF 91 (133)
Q Consensus 17 ~~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~-----~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~ 91 (133)
..+.++|||+||+++ +|+++|+++|++||+|.++.+. +.++|||||+|.+.++|.+|+.. +|.. +.|+.
T Consensus 101 ~~~~~~l~V~nLp~~--~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~---~~G~~ 174 (196)
T 1l3k_A 101 HLTVKKIFVGGIKED--TEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHT---VNGHN 174 (196)
T ss_dssp --CCSEEEEECCTTT--CCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCE---ETTEE
T ss_pred CCCcceEEEeCCCCC--CCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcE---ECCEE
Confidence 345689999999999 9999999999999999999874 34589999999999999999987 7998 99999
Q ss_pred EEEEeeecCC
Q 043011 92 LHISYSVLED 101 (133)
Q Consensus 92 l~V~~a~~~~ 101 (133)
|.|.|+.++.
T Consensus 175 i~v~~a~~k~ 184 (196)
T 1l3k_A 175 CEVRKALSKQ 184 (196)
T ss_dssp CEEEECC---
T ss_pred EEEEecCChh
Confidence 9999999887
No 196
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=3.4e-18 Score=118.00 Aligned_cols=78 Identities=18% Similarity=0.215 Sum_probs=69.0
Q ss_pred CCCCeEEEeccCCCCCCCHHHHHHHhhcCCCe----eEEEEc----CCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCC
Q 043011 18 ERSPNLFVANCGPAVGVSYEAIGSVFSAFGDV----KGIYAA----DDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLAN 89 (133)
Q Consensus 18 ~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V----~~v~~~----~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~g 89 (133)
....+|||+||+++ +|+++|+++|++||+| .+|++. ++++|||||+|.+.++|++|++. |++. +.|
T Consensus 21 ~~~~~v~V~nLp~~--~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~---l~g 94 (123)
T 2dha_A 21 ENQVIVRMRGLPFT--ATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDL---LGK 94 (123)
T ss_dssp CSCCEEEECSCCTT--CCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEE---SSS
T ss_pred CCCCEEEEeCCCCC--CCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCe---eCC
Confidence 45789999999999 9999999999999975 577763 45689999999999999999996 9999 999
Q ss_pred eeEEEEeeecCC
Q 043011 90 RFLHISYSVLED 101 (133)
Q Consensus 90 r~l~V~~a~~~~ 101 (133)
|.|.|..+.+++
T Consensus 95 R~i~V~~a~~~e 106 (123)
T 2dha_A 95 RYIELFRSTAAE 106 (123)
T ss_dssp CEECCEEECHHH
T ss_pred eEEEEEECCHHH
Confidence 999999886654
No 197
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=4.1e-16 Score=104.03 Aligned_cols=75 Identities=16% Similarity=0.198 Sum_probs=64.6
Q ss_pred CCeEEEeccC-------CCCCCCHHHHHHHhhcCCCeeEEEEcCCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCeeE
Q 043011 20 SPNLFVANCG-------PAVGVSYEAIGSVFSAFGDVKGIYAADDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRFL 92 (133)
Q Consensus 20 ~~~L~V~Nl~-------~~~~vte~~L~~~F~~fG~V~~v~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~l 92 (133)
...|-|.-.. ++ +++++|+++|++||+|.+|.+.++++|||||+|.+.++|+.|++.+++ +.|++|
T Consensus 10 ~~~~~v~w~~~~~~~~~~~--~te~~L~~~F~~~G~V~~v~i~~~~rGfaFVeF~~~~~A~~Ai~~~~~-----~~g~~l 82 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGG--YSKDVLLRLLQKYGEVLNLVLSSKKPGTAVVEFATVKAAELAVQNEVG-----LVDNPL 82 (100)
T ss_dssp SCEEEEECCCCSSCSCCCS--CCHHHHHHHHHTTSCEEEEEEESSSSSEEEEEESCHHHHHHHHHTCCB-----CSSSBC
T ss_pred cceEEEeeeccCccCcCCC--CCHHHHHHHHHhcCCEEEEEEccCCCCEEEEEECCHHHHHHHHHhcCC-----CCCCeE
Confidence 4566665543 34 899999999999999999999888999999999999999999998655 569999
Q ss_pred EEEeeecCC
Q 043011 93 HISYSVLED 101 (133)
Q Consensus 93 ~V~~a~~~~ 101 (133)
+|+|+.++.
T Consensus 83 ~V~~a~~~~ 91 (100)
T 2d9o_A 83 KISWLEGQP 91 (100)
T ss_dssp EEECSSCCC
T ss_pred EEEEccCCC
Confidence 999998775
No 198
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.68 E-value=5.9e-17 Score=119.98 Aligned_cols=76 Identities=12% Similarity=0.114 Sum_probs=67.8
Q ss_pred CCCCCeEEEeccCCCCCCCHHHHHHHhhcCCCe--eEEEEcC---CCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCe-
Q 043011 17 DERSPNLFVANCGPAVGVSYEAIGSVFSAFGDV--KGIYAAD---DSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANR- 90 (133)
Q Consensus 17 ~~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V--~~v~~~~---~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr- 90 (133)
.+|+++|||+||+++ +|+++|+++|++||.| .++++.. .++|+|||+|.+.++|.+|+..|||.. +.|+
T Consensus 120 ~~p~~~l~v~NLp~~--~t~~~L~~~F~~~G~v~~~~v~~~~~~~~~~g~gfV~f~~~~~A~~Ai~~lng~~---~~g~~ 194 (205)
T 3tyt_A 120 QHPSNVLHFFNAPLE--VTEENFFEICDELGVKRPTSVKVFSGKSERSSSGLLEWDSKSDALETLGFLNHYQ---MKNPN 194 (205)
T ss_dssp CCCCSEEEEEEECTT--CCHHHHHHHHHHHTCCCCSEEEECSCCSSSSEEEEEECSSHHHHHHHHHHHTTCE---ECCSS
T ss_pred CCCcceEEEeCCCCC--CCHHHHHHHHHhcCCcceEEEEEEcCCCCCceEEEEEeCCHHHHHHHHHHhCCCC---ccCCC
Confidence 357889999999999 9999999999999999 8998753 346999999999999999999999999 8776
Q ss_pred ---eEEEEee
Q 043011 91 ---FLHISYS 97 (133)
Q Consensus 91 ---~l~V~~a 97 (133)
++.|.||
T Consensus 195 ~~~p~~vk~~ 204 (205)
T 3tyt_A 195 GPYPYTLKLC 204 (205)
T ss_dssp SSSCEECEEE
T ss_pred CCcceEEEec
Confidence 6788776
No 199
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.68 E-value=6.5e-17 Score=118.91 Aligned_cols=75 Identities=12% Similarity=0.119 Sum_probs=67.1
Q ss_pred CCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEc----CCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCeeEEE
Q 043011 19 RSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAA----DDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRFLHI 94 (133)
Q Consensus 19 ~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~----~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~l~V 94 (133)
..++|||+|||++ +|+++|+++|++||+|.+|++. +.++|||||+|.+.++|++|+..++ .. +.|+.|.|
T Consensus 108 ~~~~l~V~nLp~~--~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~-~~---~~Gr~l~V 181 (193)
T 2voo_A 108 KNRSVYIKGFPTD--ATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPG-QK---YKETDLLI 181 (193)
T ss_dssp HHTEEEEECCCTT--CCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTT-CE---ETTEECEE
T ss_pred ccCEEEecCCCCc--CCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCC-Ce---ECCEEEEE
Confidence 3589999999999 9999999999999999999885 3568999999999999999998665 47 99999999
Q ss_pred Eeeec
Q 043011 95 SYSVL 99 (133)
Q Consensus 95 ~~a~~ 99 (133)
.++..
T Consensus 182 ~~~~~ 186 (193)
T 2voo_A 182 LFKDD 186 (193)
T ss_dssp EETTT
T ss_pred EEhHH
Confidence 98654
No 200
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.66 E-value=6e-16 Score=105.44 Aligned_cols=81 Identities=21% Similarity=0.207 Sum_probs=68.1
Q ss_pred CCCCeEEEeccCCCCCC--------CHHHHHHHhhcCCCeeEEEEcCC-CCCeEEEEECCHHHHHHHHHHhcCCCCCCCC
Q 043011 18 ERSPNLFVANCGPAVGV--------SYEAIGSVFSAFGDVKGIYAADD-SGARVIVSYFDEGSAQAAFNSLHSRPCPDLA 88 (133)
Q Consensus 18 ~~~~~L~V~Nl~~~~~v--------te~~L~~~F~~fG~V~~v~~~~~-~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~ 88 (133)
.|+++|.+.|+=..... -++||++.|++||+|.+|.+... .+|++||+|.+.++|++|++.|||+. ++
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~---f~ 81 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRW---FA 81 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCE---ET
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCE---EC
Confidence 57999999997322001 13578999999999999998644 58999999999999999999999999 99
Q ss_pred CeeEEEEeeecCC
Q 043011 89 NRFLHISYSVLED 101 (133)
Q Consensus 89 gr~l~V~~a~~~~ 101 (133)
||.|+|+|+....
T Consensus 82 GR~i~v~~~~~~~ 94 (114)
T 3s6e_A 82 GKMITAAYVPLPT 94 (114)
T ss_dssp TEECEEEEECHHH
T ss_pred CEEEEEEEEcHHH
Confidence 9999999997654
No 201
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.66 E-value=1.1e-16 Score=111.55 Aligned_cols=74 Identities=11% Similarity=0.066 Sum_probs=64.4
Q ss_pred CeEEEecc----CCCCCCCHHHHHHHhhcCCCeeEEEEc-----CCCCCeEEEEECC----HHH----HHHHHH--HhcC
Q 043011 21 PNLFVANC----GPAVGVSYEAIGSVFSAFGDVKGIYAA-----DDSGARVIVSYFD----EGS----AQAAFN--SLHS 81 (133)
Q Consensus 21 ~~L~V~Nl----~~~~~vte~~L~~~F~~fG~V~~v~~~-----~~~kg~afV~f~~----~~~----A~~A~~--~l~g 81 (133)
..|||+|| ++. +++++|+++|++||+|.++.+. +.++|||||+|.| .++ |.+|+. .|||
T Consensus 3 ~kI~VgnL~~~~~~~--tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng 80 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTN--IQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSG 80 (136)
T ss_dssp CEEEEEESSSSCCCC--CCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTC
T ss_pred cEEEEeCCCCCCCCC--CCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcC
Confidence 68999999 999 9999999999999999999873 4679999999996 333 888888 8899
Q ss_pred CCCCCCCCeeEEEEeeec
Q 043011 82 RPCPDLANRFLHISYSVL 99 (133)
Q Consensus 82 ~~~~~l~gr~l~V~~a~~ 99 (133)
.. +.||+|+|.+-..
T Consensus 81 ~~---I~Gr~irV~ln~~ 95 (136)
T 2j8a_A 81 CF---IMGFKFEVILNKH 95 (136)
T ss_dssp EE---ETTEEEEEEECCT
T ss_pred Ce---ecCcEEEEEECcc
Confidence 99 9999999998643
No 202
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.65 E-value=2.8e-16 Score=107.65 Aligned_cols=80 Identities=15% Similarity=0.157 Sum_probs=67.3
Q ss_pred CCCCeEEEeccCCCCCC---CHHHHHHHhhcCCCeeEEEEcCC---------CCCeEEEEECCHHHHHHHHHHhcCCCCC
Q 043011 18 ERSPNLFVANCGPAVGV---SYEAIGSVFSAFGDVKGIYAADD---------SGARVIVSYFDEGSAQAAFNSLHSRPCP 85 (133)
Q Consensus 18 ~~~~~L~V~Nl~~~~~v---te~~L~~~F~~fG~V~~v~~~~~---------~kg~afV~f~~~~~A~~A~~~l~g~~~~ 85 (133)
.|+++|++.|+-....+ -++||++.|++||+|.+|++..+ ++|++||+|.+.++|.+|++.|||+.
T Consensus 18 ~ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~-- 95 (118)
T 3ue2_A 18 QESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRW-- 95 (118)
T ss_dssp HSCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCE--
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCE--
Confidence 37999999998321012 36899999999999999988422 35999999999999999999999999
Q ss_pred CCCCeeEEEEeeecC
Q 043011 86 DLANRFLHISYSVLE 100 (133)
Q Consensus 86 ~l~gr~l~V~~a~~~ 100 (133)
+.||.|+|.|+...
T Consensus 96 -f~GR~i~v~~~~~~ 109 (118)
T 3ue2_A 96 -FAGRKVVAEVYDQE 109 (118)
T ss_dssp -ETTEECEEEEECHH
T ss_pred -ECCcEEEEEEcChH
Confidence 99999999998653
No 203
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.62 E-value=1.1e-16 Score=107.18 Aligned_cols=67 Identities=22% Similarity=0.287 Sum_probs=56.8
Q ss_pred eccCCCCCCCHHHHHHHh------------hcCCCeeEEEEcC----CCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCC
Q 043011 26 ANCGPAVGVSYEAIGSVF------------SAFGDVKGIYAAD----DSGARVIVSYFDEGSAQAAFNSLHSRPCPDLAN 89 (133)
Q Consensus 26 ~Nl~~~~~vte~~L~~~F------------~~fG~V~~v~~~~----~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~g 89 (133)
.||+.. +++++|++.| ++||+|.+|.+.. +++|||||+|.+.++|++|++.|||+. +.|
T Consensus 21 ~~l~~~--~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~---~~G 95 (104)
T 1jmt_A 21 DGLRSA--VSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRW---FNG 95 (104)
T ss_dssp CHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCE---ETT
T ss_pred CCcccc--cCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCE---ECC
Confidence 344444 5666666555 9999999999863 358999999999999999999999999 999
Q ss_pred eeEEEEee
Q 043011 90 RFLHISYS 97 (133)
Q Consensus 90 r~l~V~~a 97 (133)
|+|+|+|+
T Consensus 96 r~i~v~~s 103 (104)
T 1jmt_A 96 QPIHAELS 103 (104)
T ss_dssp EECCEEEC
T ss_pred EEEEEEEc
Confidence 99999997
No 204
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.60 E-value=1.5e-15 Score=115.41 Aligned_cols=82 Identities=21% Similarity=0.199 Sum_probs=69.8
Q ss_pred CCCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEc----CCCCCeEEEEECCHHHHHHHHHHhcC-CCCCCCCCeeE
Q 043011 18 ERSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAA----DDSGARVIVSYFDEGSAQAAFNSLHS-RPCPDLANRFL 92 (133)
Q Consensus 18 ~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~----~~~kg~afV~f~~~~~A~~A~~~l~g-~~~~~l~gr~l 92 (133)
.++.+|||+||++. +|+++|+++|++||+|.+|.+. ++++|||||+|.+.++|.+|+..||+ .......+|+|
T Consensus 94 ~~~~~l~v~nl~~~--~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i 171 (261)
T 3sde_A 94 THGAALTVKNLSPV--VSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPV 171 (261)
T ss_dssp CCSSEEEEESCCTT--CCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBC
T ss_pred ccCCcccccCCCCC--CCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceE
Confidence 35789999999999 9999999999999999999874 34689999999999999999999954 44111339999
Q ss_pred EEEeeecCC
Q 043011 93 HISYSVLED 101 (133)
Q Consensus 93 ~V~~a~~~~ 101 (133)
.|.++.+..
T Consensus 172 ~v~~~~~~~ 180 (261)
T 3sde_A 172 IVEPMEQFD 180 (261)
T ss_dssp EEEECCCEE
T ss_pred EEeeccccC
Confidence 999998764
No 205
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.45 E-value=4.3e-13 Score=87.81 Aligned_cols=79 Identities=18% Similarity=0.270 Sum_probs=65.3
Q ss_pred CCCCCCeEEEeccCCCC--CCCH----HHHHHHhhcCCCeeEEEEcCCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCC
Q 043011 16 EDERSPNLFVANCGPAV--GVSY----EAIGSVFSAFGDVKGIYAADDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLAN 89 (133)
Q Consensus 16 ~~~~~~~L~V~Nl~~~~--~vte----~~L~~~F~~fG~V~~v~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~g 89 (133)
..+|..|++|.-.+... ..-+ .+|.+.|++||+|..+++.. +.+||+|.+.++|.+|++ |||.. +.|
T Consensus 3 ~GPpd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~---d~~fVtF~d~~sAlaAi~-mnG~~---v~G 75 (91)
T 2dnr_A 3 SGSSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVE---DKMWVTFLEGSSALNVLS-LNGKE---LLN 75 (91)
T ss_dssp CCCSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECS---SSEEEEESSHHHHHHGGG-GTTCE---ETT
T ss_pred CCCCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEec---CCEEEEECChHHHHHHHh-cCCeE---eCC
Confidence 35678999998876210 0333 56889999999999999943 448999999999999998 99999 999
Q ss_pred eeEEEEeeecCC
Q 043011 90 RFLHISYSVLED 101 (133)
Q Consensus 90 r~l~V~~a~~~~ 101 (133)
|.|+|+++++..
T Consensus 76 r~LkV~lkt~dW 87 (91)
T 2dnr_A 76 RTITIALKSPSG 87 (91)
T ss_dssp EEEEEEECCCSS
T ss_pred eEEEEEeCCCCc
Confidence 999999998765
No 206
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.29 E-value=4.4e-11 Score=82.20 Aligned_cols=78 Identities=15% Similarity=0.086 Sum_probs=66.8
Q ss_pred CCCCCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEcCCCCCeEEEEECC-HHHHHHHHHHhc--CCCCCCCCCeeE
Q 043011 16 EDERSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAADDSGARVIVSYFD-EGSAQAAFNSLH--SRPCPDLANRFL 92 (133)
Q Consensus 16 ~~~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~~~~kg~afV~f~~-~~~A~~A~~~l~--g~~~~~l~gr~l 92 (133)
..++...|||+||+.+ .++.++|+++|++||+|..|.+. ...-.|||.|.+ .++|..|+..|| |.. ++|..+
T Consensus 14 ~~~~G~il~v~~l~~~-~~sredLke~F~~~G~V~~Vd~~-~g~~tgfVrf~~~~~~A~~av~~ln~~~~~---i~g~~~ 88 (121)
T 1owx_A 14 EEKIGCLLKFSGDLDD-QTCREDLHILFSNHGEIKWIDFV-RGAKEGIILFKEKAKEALGKAKDANNGNLQ---LRNKEV 88 (121)
T ss_dssp SCCCCCEEEEEESCCS-SCCHHHHHHHTCSSCCEEEEECC-TTCSEEEEEESSCHHHHHHHHHHTTTSCBC---TTSSSE
T ss_pred cccCCeEEEEecCCCC-cCCHHHHHHHHHhcCCEEEEEEe-cCCCEEEEEECCChHHHHHHHHHhhcCCcE---EeCcEE
Confidence 5678999999999987 37899999999999999999984 344579999999 899999999995 777 889888
Q ss_pred EEEeee
Q 043011 93 HISYSV 98 (133)
Q Consensus 93 ~V~~a~ 98 (133)
.++...
T Consensus 89 ~~evL~ 94 (121)
T 1owx_A 89 TWEVLE 94 (121)
T ss_dssp EEEECC
T ss_pred EEEECC
Confidence 877553
No 207
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=99.27 E-value=6.7e-12 Score=92.91 Aligned_cols=80 Identities=15% Similarity=0.113 Sum_probs=64.9
Q ss_pred CCCCeEEEeccCCCCC---CCHHHHHHHhhcCCCeeEEEEc----C-----CCCCeEEEEECCHHHHHHHHHHhcCCCCC
Q 043011 18 ERSPNLFVANCGPAVG---VSYEAIGSVFSAFGDVKGIYAA----D-----DSGARVIVSYFDEGSAQAAFNSLHSRPCP 85 (133)
Q Consensus 18 ~~~~~L~V~Nl~~~~~---vte~~L~~~F~~fG~V~~v~~~----~-----~~kg~afV~f~~~~~A~~A~~~l~g~~~~ 85 (133)
.++..+.+.|+-.... -.+++|++.|++||+|.++.+. . +++|++||+|.+.++|.+|++.|||+.
T Consensus 122 ~~s~v~~l~n~v~~~e~~~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~-- 199 (222)
T 3dxb_A 122 MESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRW-- 199 (222)
T ss_dssp CBCSEEEEESSCCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCB--
T ss_pred cccccchhhcCCCHHHHHHHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCce--
Confidence 3456666666532111 3468899999999999999884 2 568999999999999999999999999
Q ss_pred CCCCeeEEEEeeecC
Q 043011 86 DLANRFLHISYSVLE 100 (133)
Q Consensus 86 ~l~gr~l~V~~a~~~ 100 (133)
+.||.|++.|+...
T Consensus 200 -~~gr~i~~~~~~~~ 213 (222)
T 3dxb_A 200 -FAGRKVVAEVYDQE 213 (222)
T ss_dssp -SSSSBCEEEECCHH
T ss_pred -ECCeEEEEEEcCHH
Confidence 99999999998643
No 208
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.23 E-value=1.5e-11 Score=81.01 Aligned_cols=76 Identities=13% Similarity=0.199 Sum_probs=61.9
Q ss_pred CCCCCCeEEEeccCCC---CCCCH----HHHHHHhhcCCCeeEEEEcCCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCC
Q 043011 16 EDERSPNLFVANCGPA---VGVSY----EAIGSVFSAFGDVKGIYAADDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLA 88 (133)
Q Consensus 16 ~~~~~~~L~V~Nl~~~---~~vte----~~L~~~F~~fG~V~~v~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~ 88 (133)
-.+|..|++|..++++ -..-+ .+|.+.|++||+|..+++.... +||+|.+.++|.+|++ |||.. +.
T Consensus 11 ~GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~---~fVtF~d~~sAl~AI~-ldG~~---v~ 83 (95)
T 1ufw_A 11 QGPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ---MLVTFADSHSALSVLD-VDGMK---VK 83 (95)
T ss_dssp CCCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE---EEEECSCSHHHHHHHH-GGGSE---ET
T ss_pred cCCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc---EEEEEcChHHHHHHHh-cCCee---eC
Confidence 4678999999987632 00212 4588999999999999984433 9999999999999998 99999 99
Q ss_pred CeeEEEEeee
Q 043011 89 NRFLHISYSV 98 (133)
Q Consensus 89 gr~l~V~~a~ 98 (133)
||.|+|++-.
T Consensus 84 Gr~L~V~~k~ 93 (95)
T 1ufw_A 84 GRAVKISGPS 93 (95)
T ss_dssp TEEEEEECCC
T ss_pred CeEEEEeccC
Confidence 9999998743
No 209
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=98.86 E-value=1.5e-09 Score=75.64 Aligned_cols=72 Identities=11% Similarity=0.051 Sum_probs=61.2
Q ss_pred CCCCeEEEEECCHHHHHHHHHHh-cCCCCCCCCCeeEEEEeeecCC-------------CCCCCCCcceeEeeecCCCCC
Q 043011 57 DSGARVIVSYFDEGSAQAAFNSL-HSRPCPDLANRFLHISYSVLED-------------SPATRHITSSVPVSLVASELN 122 (133)
Q Consensus 57 ~~kg~afV~f~~~~~A~~A~~~l-~g~~~~~l~gr~l~V~~a~~~~-------------~~~~~~~~~~l~v~nl~~~~~ 122 (133)
+-+|+++|+|.+.++|++|++.+ ||.. +.| .+.++++..+. .........+|+|+|||..++
T Consensus 11 ~l~G~~~ve~~~~~~A~~a~~~~~ng~~---~~G-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t 86 (150)
T 2i2y_A 11 TLKGETTTEAVDAATAEKVFKQYANDNG---VDG-EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGNNGN 86 (150)
T ss_dssp SSCEEEEEECSSHHHHTTTHHHHHHHHT---CCC-EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCSCCS
T ss_pred cccccceeeecCHHHHHHHHHHHhcCCC---CCC-ceecccccCccccccccccccccccccCCCCCCEEEEeCCCCCCC
Confidence 56899999999999999999999 9999 999 99999987521 122344557899999999999
Q ss_pred chhhhhhhcc
Q 043011 123 IPGLHSCFMT 132 (133)
Q Consensus 123 ~~~l~~~f~~ 132 (133)
..+|+++|..
T Consensus 87 ~~~l~~~F~~ 96 (150)
T 2i2y_A 87 KTELERAFGY 96 (150)
T ss_dssp CHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999999963
No 210
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.82 E-value=1.4e-08 Score=68.40 Aligned_cols=72 Identities=15% Similarity=0.135 Sum_probs=65.7
Q ss_pred CCCCeEEEeccCCCCCCCHHHHHHHhhcC-----CCeeEEEEcCCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCeeE
Q 043011 18 ERSPNLFVANCGPAVGVSYEAIGSVFSAF-----GDVKGIYAADDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRFL 92 (133)
Q Consensus 18 ~~~~~L~V~Nl~~~~~vte~~L~~~F~~f-----G~V~~v~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~l 92 (133)
+..++|=+=|||.. +++..++.+.++| |+|.+|.+..+ .+=|+|+|.|...|.+|.-+|+|.+ +.||+|
T Consensus 19 ~~~rtiaL~~ipDt--vndarIr~lve~~~~i~~g~i~KI~L~pD-H~GAivef~d~~~AgKasLaL~G~e---f~gr~L 92 (117)
T 2l9w_A 19 ELETLICLFPLSDK--VSPSLICQFLQEEIHINEKDIRKILLVSD-FNGAIIIFRDSKFAAKMLMILNGSQ---FQGKVI 92 (117)
T ss_dssp TTTSCEEEECCCTT--CCHHHHHHHHHHHTCCCTTTCSEEEEETT-TTEEEEECSCHHHHHHHHHHHSSEE---ETTEEE
T ss_pred cCCcEEEEecCCCC--CCHHHHHHHHhhhhccCccceeEEEEecC-CCceEEEEccchhhHHHHhhcCCee---ecCeEE
Confidence 45789999999999 9999999999999 99999998544 4559999999999999999999999 999999
Q ss_pred EEE
Q 043011 93 HIS 95 (133)
Q Consensus 93 ~V~ 95 (133)
++.
T Consensus 93 r~g 95 (117)
T 2l9w_A 93 RSG 95 (117)
T ss_dssp EEE
T ss_pred Eec
Confidence 985
No 211
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.63 E-value=5.3e-08 Score=64.95 Aligned_cols=76 Identities=18% Similarity=0.169 Sum_probs=63.9
Q ss_pred CCeEEEeccCCCCCC-CH----HHHHHHhhcCCCeeEEEEcCCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCeeEEE
Q 043011 20 SPNLFVANCGPAVGV-SY----EAIGSVFSAFGDVKGIYAADDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRFLHI 94 (133)
Q Consensus 20 ~~~L~V~Nl~~~~~v-te----~~L~~~F~~fG~V~~v~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~l~V 94 (133)
..+|+|+||+.+ + .. +.++++|.+|+++.+.... ++=.-..|.|.+.++|.+|...||+.. +.|+.|+|
T Consensus 5 pntLiitnl~~~--vF~~~~lk~~~e~Lf~~~~~~~tF~~l-kSFRRirv~F~~~~~A~~AR~~Lh~~~---f~g~~~r~ 78 (104)
T 1wey_A 5 SSGLIACVANDD--VFSESETRAKFESLFRTYDKDTTFQYF-KSFKRVRINFSNPLSAADARLRLHKTE---FLGKEMKL 78 (104)
T ss_dssp CCEEEEECCCGG--GGSTTTHHHHHHHHHHTTCSSCEEEEE-TTTTEEEEECSSTTHHHHHHHTSTTSE---ETTEECEE
T ss_pred CceEEEecCCHH--HcCCHHHHHHHHHHHHhhCcCcceeec-CcceEEEEEeCChHHHHHHHHHhccce---ecCceeEE
Confidence 468999999887 4 32 5678999999999887763 343457899999999999999999999 99999999
Q ss_pred EeeecCC
Q 043011 95 SYSVLED 101 (133)
Q Consensus 95 ~~a~~~~ 101 (133)
.|+.+.+
T Consensus 79 YFgq~~~ 85 (104)
T 1wey_A 79 YFAQTLH 85 (104)
T ss_dssp ECCCCSS
T ss_pred EecCCCC
Confidence 9998654
No 212
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=98.61 E-value=6e-08 Score=67.75 Aligned_cols=74 Identities=9% Similarity=0.013 Sum_probs=52.2
Q ss_pred CCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCeeEEEE-------eeecCC---CCCCCCCcceeEeeecCCCCCchh
Q 043011 56 DDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRFLHIS-------YSVLED---SPATRHITSSVPVSLVASELNIPG 125 (133)
Q Consensus 56 ~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~l~V~-------~a~~~~---~~~~~~~~~~l~v~nl~~~~~~~~ 125 (133)
.+.+|||||+|.+.++|++|+..+++.. ..+....+. ...... .........+|+|+|||..++..+
T Consensus 10 ~~~~G~~fV~f~~~~~A~~al~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~ 86 (158)
T 2kn4_A 10 KTLKGETTTEAVDAATAEKVFKQYANDN---GVDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNLTYRTSPDT 86 (158)
T ss_dssp SSCEEEEEEECSSHHHHHHHHHHHHHHH---TCCCEEEEETTTTEEEEECCCCCSSCCCCCCBCCEEEEESCCTTCCHHH
T ss_pred ccccchhHHHHHHHHhHHHHHHhhcccC---CCCCcccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCHHH
Confidence 3579999999999999999999988654 222222222 221111 122234456799999999999999
Q ss_pred hhhhhcc
Q 043011 126 LHSCFMT 132 (133)
Q Consensus 126 l~~~f~~ 132 (133)
|+++|..
T Consensus 87 l~~~F~~ 93 (158)
T 2kn4_A 87 LRRVFEK 93 (158)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9999963
No 213
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.22 E-value=2.6e-05 Score=51.78 Aligned_cols=92 Identities=13% Similarity=0.114 Sum_probs=70.1
Q ss_pred CCCCCeEEEeccCCCCCCCHHHHHHHhhc---C--CCeeEEEEcCCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCee
Q 043011 17 DERSPNLFVANCGPAVGVSYEAIGSVFSA---F--GDVKGIYAADDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRF 91 (133)
Q Consensus 17 ~~~~~~L~V~Nl~~~~~vte~~L~~~F~~---f--G~V~~v~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~ 91 (133)
....++|.|.||+++ ++++.|.-.|+. - |+|.++.... +-|+|+|.+.+.|++.++. .-+. |.+..
T Consensus 5 ~~~~~~I~V~~lPp~--~~~e~L~LYFEn~rrsGGG~V~~v~~~~---~~AvItF~d~~va~rVL~k-~~H~---L~~~~ 75 (104)
T 2dhx_A 5 SSGGVAVEVRGLPPA--VPDELLTLYFENRRRSGGGPVLSWQRLG---CGGVLTFREPADAERVLAQ-ADHE---LHGAQ 75 (104)
T ss_dssp CCCCCEEEEESCCTT--SCHHHHHHHHHCTTTTCCCCEEEEEEET---TEEEEEESSHHHHHHHHTC-SCCB---SSSSB
T ss_pred ccCccEEEEECCCCC--CChhHheEEEeCCCcCCCceeeEEEEcC---CcEEEEEcChHHHHHHhcC-Ccce---ecCeE
Confidence 445789999999999 999999999988 2 5899998844 7799999999999887753 1234 88888
Q ss_pred EEEEeeecCCCCCCCCCcceeEeeecCCCCCch
Q 043011 92 LHISYSVLEDSPATRHITSSVPVSLVASELNIP 124 (133)
Q Consensus 92 l~V~~a~~~~~~~~~~~~~~l~v~nl~~~~~~~ 124 (133)
|.|.-..+..+ ..+.+.+|++.++.+
T Consensus 76 LsV~P~~~~~~-------~r~ll~gl~~~t~~~ 101 (104)
T 2dhx_A 76 LSLRPAPPRAP-------ARLLLQGLPPGTSGP 101 (104)
T ss_dssp CEEEECCCCCC-------CCCCCCSCCCCCCCC
T ss_pred EEEEcCCCCCc-------ceEeeecCCCCCCCC
Confidence 88865444432 346777777776544
No 214
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.69 E-value=0.00051 Score=44.54 Aligned_cols=77 Identities=8% Similarity=0.107 Sum_probs=58.3
Q ss_pred CeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEE-cCC------CCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCe--e
Q 043011 21 PNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYA-ADD------SGARVIVSYFDEGSAQAAFNSLHSRPCPDLANR--F 91 (133)
Q Consensus 21 ~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~-~~~------~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr--~ 91 (133)
.+|.|++||++ +|++++.+..+.+.++.-... .++ .-+.|||.|.+.+++..-.+.++|+..-+=.|. +
T Consensus 2 ~KvVIRrLPP~--LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~~~ 79 (91)
T 1uw4_A 2 SKVVIRRLPPT--LTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYP 79 (91)
T ss_dssp CEEEEEEECTT--CCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCEEE
T ss_pred cEEEEeCCCCC--CCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCEee
Confidence 47899999999 999999999999987655443 222 236799999999999999999999983222332 2
Q ss_pred EEEEeeec
Q 043011 92 LHISYSVL 99 (133)
Q Consensus 92 l~V~~a~~ 99 (133)
-.|+||.-
T Consensus 80 a~VE~AP~ 87 (91)
T 1uw4_A 80 AIVEFAPF 87 (91)
T ss_dssp CEEEECSS
T ss_pred eEEEEcCC
Confidence 24677643
No 215
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=97.58 E-value=1.6e-05 Score=54.50 Aligned_cols=66 Identities=12% Similarity=-0.010 Sum_probs=26.6
Q ss_pred CeEEEEECCHHHHHHHHHHhcCCCCCCCCCeeEEEEeeecCCCCCCCCCcceeEeeecCCCCCchhhhhhhcc
Q 043011 60 ARVIVSYFDEGSAQAAFNSLHSRPCPDLANRFLHISYSVLEDSPATRHITSSVPVSLVASELNIPGLHSCFMT 132 (133)
Q Consensus 60 g~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~l~V~~a~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~ 132 (133)
-++|.+|.|...|..|+..++|.. ..|+. ...++.+. .+.....+|+|+|||..++..+|+++|..
T Consensus 5 ~~~~~~~~~~~~~~~a~~~~~g~~---~~g~~-~~~~~~~~---~~~~~~~~l~V~nLp~~~te~~L~~~F~~ 70 (135)
T 2lea_A 5 HHHHHHSSGLVPRGSHMASMTGGQ---QMGRG-SMSYGRPP---PDVEGMTSLKVDNLTYRTSPDTLRRVFEK 70 (135)
T ss_dssp ----------------------------------CCSCCSC---SSGGGCCCEEEECCCSSCHHHHHHHHHGG
T ss_pred ccccccccCCCchhhhhhhccCCC---CCCCC-CCCcCCCC---CCCCCCCEEEEeCCCCCCCHHHHHHHHHh
Confidence 357888999999999999999877 55553 23343332 24445567999999999999999999964
No 216
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=97.39 E-value=9e-05 Score=60.90 Aligned_cols=55 Identities=16% Similarity=0.311 Sum_probs=41.7
Q ss_pred CCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEcCCCCCeEEEEECCHHHHHHHHH
Q 043011 20 SPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAADDSGARVIVSYFDEGSAQAAFN 77 (133)
Q Consensus 20 ~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~~~~kg~afV~f~~~~~A~~A~~ 77 (133)
.+.|+|. .+.. +++.+|.+.|++||+|.++.+.....-||.|+|.+.+++.+++.
T Consensus 53 ~rsv~v~-~~~~--~~~~~l~~y~~~~g~i~~~~~~~~~g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 53 QRTVLIH-CPEK--ISENKFLKYLSQFGPINNHFFYESFGLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HTEEEEE-ECCC-----CHHHHHHGGGSCCCCEEEECSSSEEEEEECC---CCHHHHS
T ss_pred cceEEEE-cCCC--CCHHHHHHHHHhcCCcceEEEEccCCeEEEEEeCCHHHHHHHHh
Confidence 4789997 8989 99999999999999999999954444599999999999887654
No 217
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.27 E-value=0.0018 Score=42.57 Aligned_cols=54 Identities=22% Similarity=0.247 Sum_probs=43.5
Q ss_pred CeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEcCCCCCeEEEEECCHHHHHHHHHHhc
Q 043011 21 PNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAADDSGARVIVSYFDEGSAQAAFNSLH 80 (133)
Q Consensus 21 ~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~~~~kg~afV~f~~~~~A~~A~~~l~ 80 (133)
..++| ..|+. ....||.++|++||.|.=-.+ ..--|||.|.+.+.|..|++.+.
T Consensus 17 HVf~l-~FP~e--wKt~DI~~lFs~fggv~I~Wi---dDTsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 17 HVLHV-TFPKE--WKTSDLYQLFSAFGNIQISWI---DDTSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp SEEEE-ECCTT--CCHHHHHHHHTTTCSCCCEEE---ETTEEEEECSCHHHHHHHHHHHH
T ss_pred eEEEE-eCChh--hhhHHHHHHhhccCCEEEEEE---cCCeEEEEecCHHHHHHHHHhcc
Confidence 45555 99999 999999999999996532223 23469999999999999999875
No 218
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.21 E-value=0.0012 Score=44.83 Aligned_cols=71 Identities=14% Similarity=0.161 Sum_probs=56.4
Q ss_pred CCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEcCCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCC-eeEEEEee
Q 043011 19 RSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAADDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLAN-RFLHISYS 97 (133)
Q Consensus 19 ~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~g-r~l~V~~a 97 (133)
....|.|-..++. . .+.+-+.|++||+|.+... .....+-.|.|.+..+|++|+. .||+. +.| -.|-|...
T Consensus 23 ~~~wVtVFGFp~~--~-~~~VL~~F~~~G~Iv~~~~-~~~~NWihI~Y~s~~~A~rAL~-kNG~i---i~g~~mIGV~p~ 94 (119)
T 1wwh_A 23 DDTWVTVFGFPQA--S-ASYILLQFAQYGNILKHVM-SNTGNWMHIRYQSKLQARKALS-KDGRI---FGESIMIGVKPC 94 (119)
T ss_dssp GGGEEEEECCCGG--G-HHHHHHHHHTTSCEEEEEE-CSSSSEEEEEESSHHHHHHHHT-TTTCE---ETTTEECEEEEC
T ss_pred CCCEEEEECCCHH--H-HHHHHHHHHhhCcEEEecc-CCCCCeEEEEeCCHHHHHHHHH-hCCeE---ecCCEEEEEEEC
Confidence 4678888888876 4 5677889999999998887 4466799999999999999997 49998 875 44455443
No 219
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=97.04 E-value=0.00029 Score=49.40 Aligned_cols=66 Identities=11% Similarity=0.066 Sum_probs=23.2
Q ss_pred EEECCHHHHHHHHHHhcCCCCCCCC--CeeEEEEeeecC----------------C-CCCCCCCcceeEeeecCCCCCch
Q 043011 64 VSYFDEGSAQAAFNSLHSRPCPDLA--NRFLHISYSVLE----------------D-SPATRHITSSVPVSLVASELNIP 124 (133)
Q Consensus 64 V~f~~~~~A~~A~~~l~g~~~~~l~--gr~l~V~~a~~~----------------~-~~~~~~~~~~l~v~nl~~~~~~~ 124 (133)
.+|++.++|+.|+..|++.. .. |+.....++... . .+.......+|+|+|||..++..
T Consensus 11 ee~e~~~d~e~~~~~~~~~~---~~~kgr~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~ 87 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKA---KHRKGRGFGSDSNTREAIHSYERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQED 87 (165)
T ss_dssp ----------------------------------------------------------CCCCC-CEEEEEESCCTTCCHH
T ss_pred hhhhccccccccchhhcccc---ccccCCCCCCCccccccccCccccccCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHH
Confidence 78999999999999999887 55 666666653221 0 12233344579999999999999
Q ss_pred hhhhhhcc
Q 043011 125 GLHSCFMT 132 (133)
Q Consensus 125 ~l~~~f~~ 132 (133)
+|+++|..
T Consensus 88 ~L~~~F~~ 95 (165)
T 1rk8_A 88 EIQEKFCD 95 (165)
T ss_dssp HHHHHHGG
T ss_pred HHHHHhhc
Confidence 99999964
No 220
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.03 E-value=0.0012 Score=43.52 Aligned_cols=53 Identities=23% Similarity=0.256 Sum_probs=42.8
Q ss_pred eEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEcCCCCCeEEEEECCHHHHHHHHHHhc
Q 043011 22 NLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAADDSGARVIVSYFDEGSAQAAFNSLH 80 (133)
Q Consensus 22 ~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~~~~kg~afV~f~~~~~A~~A~~~l~ 80 (133)
.++| +.|+. ....||.++|++||.|. |... ..--|||.|.+.+.|..|+..+.
T Consensus 8 V~~l-~FP~e--wKt~Di~~lFs~fggv~-I~Wi--dDTsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 8 VLHV-TFPKE--WKTSDLYQLFSAFGNIQ-ISWI--DDTSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEE-ECCTT--CCHHHHHHHTTTSEEEE-EEEE--ETTEEEEEEEEECHHHHHHHHHT
T ss_pred EEEE-eCChh--hhhHHHHHHHhccCCEE-EEEE--cCCeEEEEecCHHHHHHHHHhcc
Confidence 4555 99999 99999999999999443 3322 24469999999999999999875
No 221
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=96.83 E-value=7.2e-05 Score=60.80 Aligned_cols=90 Identities=13% Similarity=0.096 Sum_probs=51.1
Q ss_pred HHHHhhcCCCeeEEEEcC-------CCCCeE-----EEEECCHHHHHHHHHHhcCCCCCCCCCe---------------e
Q 043011 39 IGSVFSAFGDVKGIYAAD-------DSGARV-----IVSYFDEGSAQAAFNSLHSRPCPDLANR---------------F 91 (133)
Q Consensus 39 L~~~F~~fG~V~~v~~~~-------~~kg~a-----fV~f~~~~~A~~A~~~l~g~~~~~l~gr---------------~ 91 (133)
|.++|.++|+|..+.... +..+++ |+.|.+..+|..++..++... ..++ .
T Consensus 9 L~~lF~p~pPl~~~~P~~~~p~~~~~~~~~~gia~~~~~f~~~~~~~~~~~~e~~~~---~~~~~~~~k~~~~~~~~~~~ 85 (437)
T 3pgw_S 9 LLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRDAPPPTRAETREE---RMERKRREKIERRQQEVETE 85 (437)
T ss_pred HHHhcCCCCCCcCCCCcccccccccCCCCcccHHHHHHhhcCcccccccccccCHHH---HHHHHHHHHHHHHHHHHHHh
Confidence 889999999998773211 223444 777776555443333222111 1110 1
Q ss_pred EEEEeeecCCCCCCCCCcceeEeeecCCCCCchhhhhhhcc
Q 043011 92 LHISYSVLEDSPATRHITSSVPVSLVASELNIPGLHSCFMT 132 (133)
Q Consensus 92 l~V~~a~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~ 132 (133)
+. .|.....+........+|+|+||+..++..+|.++|..
T Consensus 86 ~~-~~~p~~~~~~~~~~~~~lfV~nL~~~~te~~L~~~F~~ 125 (437)
T 3pgw_S 86 LK-MWDPHNDPNAQGDAFKTLFVARVNYDTTESKLRREFEV 125 (437)
T ss_pred hh-hcCCcccccccCCCCCEEEEeCCCCCCCHHHHHHHHHH
Confidence 11 11111112222333467999999999999999999964
No 222
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.48 E-value=0.0069 Score=39.60 Aligned_cols=78 Identities=9% Similarity=0.048 Sum_probs=55.0
Q ss_pred CCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEE-cCC------CCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCe-
Q 043011 19 RSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYA-ADD------SGARVIVSYFDEGSAQAAFNSLHSRPCPDLANR- 90 (133)
Q Consensus 19 ~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~-~~~------~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr- 90 (133)
-+-+|.|+.||+. +|++++.+.++.+=++.-... .++ .-..|||.|.+.++...-.+..+|...-+=.|.
T Consensus 8 ~~~KvVIRrLPP~--Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~ 85 (97)
T 2l08_A 8 HSHMVVIRRLPPG--LTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLE 85 (97)
T ss_dssp CCCCEEEECCCSC--SCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCE
T ss_pred cceeEEEeCCCCC--CCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCE
Confidence 4678999999999 999999888877655422211 111 235689999999999999999999873222232
Q ss_pred -eEEEEeee
Q 043011 91 -FLHISYSV 98 (133)
Q Consensus 91 -~l~V~~a~ 98 (133)
+-.|+||.
T Consensus 86 ~~a~VE~AP 94 (97)
T 2l08_A 86 YPAVVEFAP 94 (97)
T ss_dssp EEEEEEECC
T ss_pred eeeEEEecC
Confidence 33466664
No 223
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=95.98 E-value=0.0036 Score=40.59 Aligned_cols=46 Identities=13% Similarity=0.180 Sum_probs=35.2
Q ss_pred CCCeeEEEEeeecCCCCCCCCCcceeEeeecCCC-CCchhhhhhhcc
Q 043011 87 LANRFLHISYSVLEDSPATRHITSSVPVSLVASE-LNIPGLHSCFMT 132 (133)
Q Consensus 87 l~gr~l~V~~a~~~~~~~~~~~~~~l~v~nl~~~-~~~~~l~~~f~~ 132 (133)
..|+.|.+..+.+...........+|+|+||+.. ++..+|+++|..
T Consensus 5 ~~g~~~~~~~s~~~~~~~~~~~~~~l~V~nl~~~~~t~~~l~~~F~~ 51 (110)
T 1wf1_A 5 SSGMSLKLQASNVTNKNDPKSINSRVFIGNLNTALVKKSDVETIFSK 51 (110)
T ss_dssp CCSCCCCCCCCCSCCSCCCTTCSSEEEECSCCCSSCCHHHHHHHHGG
T ss_pred CCCcccccccCCCCCCCCCCCCCcEEEEeCCCcccCCHHHHHHHHHh
Confidence 4577888877766553333444568999999999 999999999974
No 224
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=95.43 E-value=0.015 Score=40.01 Aligned_cols=73 Identities=12% Similarity=0.111 Sum_probs=52.7
Q ss_pred CCeEEEeccCCCCCCCHHHHHHHhhcCCCeeE-EEEcC------------------CCCCeEEEEECCHHHHHHHHHHhc
Q 043011 20 SPNLFVANCGPAVGVSYEAIGSVFSAFGDVKG-IYAAD------------------DSGARVIVSYFDEGSAQAAFNSLH 80 (133)
Q Consensus 20 ~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~-v~~~~------------------~~kg~afV~f~~~~~A~~A~~~l~ 80 (133)
...+.|-..|++ ....+-+.|++||.|.+ +.... ....+..|+|.+..+|.+|+. -|
T Consensus 7 e~~VtVFGFp~~---~~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~N 82 (132)
T 3p3d_A 7 ELAILVFGYPET---MANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-EN 82 (132)
T ss_dssp -CEEEEECCCGG---GHHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TT
T ss_pred ceEEEEEecCHH---HHHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hC
Confidence 345556666654 45667789999999865 22111 135678999999999999997 69
Q ss_pred CCCCCCCCCeeEEEEeeec
Q 043011 81 SRPCPDLANRFLHISYSVL 99 (133)
Q Consensus 81 g~~~~~l~gr~l~V~~a~~ 99 (133)
|+. +.|.-|-|....+
T Consensus 83 G~i---i~G~mIGV~Py~~ 98 (132)
T 3p3d_A 83 GAV---FNGVLLGVIPYTK 98 (132)
T ss_dssp TCE---ETTEECEEEECCH
T ss_pred CeE---eCcEEEEEEECCH
Confidence 999 9998777776643
No 225
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=94.67 E-value=0.012 Score=40.43 Aligned_cols=69 Identities=6% Similarity=-0.109 Sum_probs=22.2
Q ss_pred CCeEEEEECCHHHHHHHHHHhcCCCCCCCCCeeEEEEeeecCCCCCCCCCcceeEeeecCCCCCchhhhhhhcc
Q 043011 59 GARVIVSYFDEGSAQAAFNSLHSRPCPDLANRFLHISYSVLEDSPATRHITSSVPVSLVASELNIPGLHSCFMT 132 (133)
Q Consensus 59 kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~l~V~~a~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~ 132 (133)
+|+|+-+++..+.+..|+.++... ..|...--.+..... ........+|+|+|||.+++..+|+++|..
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~----~gg~~~g~~~g~~~~-~~~~~~~~~lfV~nLp~~~te~dL~~~F~~ 69 (139)
T 2hgn_A 1 MGSSHHHHHHSSGLVPRGSHMASM----TGGQQMGRGSGDSEF-TVQSTTGHCVHMRGLPYKATENDIYNFFSP 69 (139)
T ss_dssp -------------------------------------------------CCCCEECCSCCTTCCHHHHHHHHCS
T ss_pred CCcccccccCccccchhcccchhc----cCCCCCCCCCCCccc-CCCCCCCCEEEEeCCCCCCCHHHHHHHHHh
Confidence 367888888887777777665543 233322112211111 122334457999999999999999999974
No 226
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=94.39 E-value=0.037 Score=35.15 Aligned_cols=26 Identities=8% Similarity=0.060 Sum_probs=22.8
Q ss_pred CCcceeEeeecCCCCCchhhhhhhcc
Q 043011 107 HITSSVPVSLVASELNIPGLHSCFMT 132 (133)
Q Consensus 107 ~~~~~l~v~nl~~~~~~~~l~~~f~~ 132 (133)
....+|+|+||+..++..+|+++|..
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~ 38 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQP 38 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh
Confidence 34567999999999999999999964
No 227
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.27 E-value=0.036 Score=35.00 Aligned_cols=29 Identities=14% Similarity=0.109 Sum_probs=24.2
Q ss_pred CCCCCcceeEeeecCCCCCchhhhhhhcc
Q 043011 104 ATRHITSSVPVSLVASELNIPGLHSCFMT 132 (133)
Q Consensus 104 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~ 132 (133)
.......+|+|+||+..++..+|+++|..
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~ 38 (102)
T 2fc8_A 10 ARSQPSKTLFVKGLSEDTTEETLKESFDG 38 (102)
T ss_dssp SSSCCCSSEEEECCCTTCCHHHHHHTSTT
T ss_pred CCCCCCCEEEEeCCCCccCHHHHHHHhcC
Confidence 34455677999999999999999999963
No 228
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=94.05 E-value=0.035 Score=33.99 Aligned_cols=27 Identities=11% Similarity=0.073 Sum_probs=23.1
Q ss_pred CCCcceeEeeecCCCCCchhhhhhhcc
Q 043011 106 RHITSSVPVSLVASELNIPGLHSCFMT 132 (133)
Q Consensus 106 ~~~~~~l~v~nl~~~~~~~~l~~~f~~ 132 (133)
.....+|+|+|||..++..+|+++|..
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~ 34 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTK 34 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh
Confidence 344567999999999999999999964
No 229
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=93.91 E-value=0.27 Score=40.59 Aligned_cols=57 Identities=23% Similarity=0.213 Sum_probs=45.8
Q ss_pred CCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEcCCCCCeEEEEECCHHHHHHHHHHhcCC
Q 043011 20 SPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAADDSGARVIVSYFDEGSAQAAFNSLHSR 82 (133)
Q Consensus 20 ~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~~~~kg~afV~f~~~~~A~~A~~~l~g~ 82 (133)
...++|+ .+.. ....+|.++|+.||.| +|+.. ....|||.|.+.+.|..++++++..
T Consensus 440 ~~vl~v~-f~~~--~~~~~i~~~fs~fg~v-~V~wi--ddt~a~V~~~~~~~a~~~l~~~~~~ 496 (507)
T 3d45_A 440 DHVLHVT-FPKE--WKTSDLYQLFSAFGNI-QISWI--DDTSAFVSLSQPEQVQIAVNTSKYA 496 (507)
T ss_dssp GGEEEEE-CCTT--CCHHHHHHHGGGGCCC-EEEEC--SSSEEEEECSCHHHHHHHHHHHTTC
T ss_pred CcEEEEe-CCCC--CCHHHHHHHHHhcCCE-EEEEE--cCCeEEEEECCHHHHHHHHHHHHhC
Confidence 4577777 8888 8899999999999965 44443 4456999999999999999998643
No 230
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.73 E-value=0.051 Score=34.38 Aligned_cols=28 Identities=11% Similarity=0.029 Sum_probs=23.8
Q ss_pred CCCCcceeEeeecCCCCCchhhhhhhcc
Q 043011 105 TRHITSSVPVSLVASELNIPGLHSCFMT 132 (133)
Q Consensus 105 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~ 132 (133)
......+|+|+|||..++..+|+++|..
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~ 36 (103)
T 2dnm_A 9 DVDGMITLKVDNLTYRTSPDSLRRVFEK 36 (103)
T ss_dssp CCSCCCEEEEESCCTTCCHHHHHHHHTT
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHh
Confidence 3445577999999999999999999964
No 231
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.64 E-value=0.05 Score=33.78 Aligned_cols=27 Identities=11% Similarity=0.137 Sum_probs=23.2
Q ss_pred CCCcceeEeeecCCCCCchhhhhhhcc
Q 043011 106 RHITSSVPVSLVASELNIPGLHSCFMT 132 (133)
Q Consensus 106 ~~~~~~l~v~nl~~~~~~~~l~~~f~~ 132 (133)
.....+|+|+|||..++..+|+++|..
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~ 33 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEE 33 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh
Confidence 344567999999999999999999964
No 232
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=93.60 E-value=0.0013 Score=43.49 Aligned_cols=25 Identities=24% Similarity=0.117 Sum_probs=22.3
Q ss_pred CcceeEeeecCCCCCchhhhhhhcc
Q 043011 108 ITSSVPVSLVASELNIPGLHSCFMT 132 (133)
Q Consensus 108 ~~~~l~v~nl~~~~~~~~l~~~f~~ 132 (133)
...+|+|+||+..++..+|+++|..
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~ 59 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSS 59 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHh
Confidence 4567999999999999999999964
No 233
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=93.55 E-value=0.064 Score=34.64 Aligned_cols=28 Identities=4% Similarity=-0.006 Sum_probs=23.6
Q ss_pred CCCCcceeEeeecCCCCCchhhhhhhcc
Q 043011 105 TRHITSSVPVSLVASELNIPGLHSCFMT 132 (133)
Q Consensus 105 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~ 132 (133)
......+|+|+|||..++..+|+++|..
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~ 38 (101)
T 2cq1_A 11 DGAPSRVLHIRKLPGEVTETEVIALGLP 38 (101)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHTTTT
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHh
Confidence 3345567999999999999999999964
No 234
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=93.53 E-value=0.075 Score=33.58 Aligned_cols=28 Identities=18% Similarity=0.255 Sum_probs=23.9
Q ss_pred CCCCcceeEeeecCCCCCchhhhhhhcc
Q 043011 105 TRHITSSVPVSLVASELNIPGLHSCFMT 132 (133)
Q Consensus 105 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~ 132 (133)
......+|+|+|||..++..+|+++|..
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~ 38 (103)
T 2cq3_A 11 SKSTPKRLHVSNIPFRFRDPDLRQMFGQ 38 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHGGG
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHh
Confidence 3445577999999999999999999974
No 235
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.38 E-value=0.063 Score=32.60 Aligned_cols=26 Identities=12% Similarity=0.194 Sum_probs=22.6
Q ss_pred CCcceeEeeecCCCCCchhhhhhhcc
Q 043011 107 HITSSVPVSLVASELNIPGLHSCFMT 132 (133)
Q Consensus 107 ~~~~~l~v~nl~~~~~~~~l~~~f~~ 132 (133)
....+|+|+|||..++..+|+++|..
T Consensus 10 ~~~~~l~V~~l~~~~t~~~l~~~f~~ 35 (85)
T 2ytc_A 10 KTITTLYVGGLGDTITETDLRNHFYQ 35 (85)
T ss_dssp SSCCCEEEECCTTTSCHHHHHHHHHT
T ss_pred CCccEEEEcCCCCCCCHHHHHHHHHh
Confidence 34467999999999999999999964
No 236
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.37 E-value=0.078 Score=33.51 Aligned_cols=28 Identities=18% Similarity=0.169 Sum_probs=23.8
Q ss_pred CCCCcceeEeeecCCCCCchhhhhhhcc
Q 043011 105 TRHITSSVPVSLVASELNIPGLHSCFMT 132 (133)
Q Consensus 105 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~ 132 (133)
......+|+|+|||..++..+|+++|..
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~ 38 (103)
T 2d9p_A 11 TRYQVVNLYVKNLDDGIDDERLRKAFSP 38 (103)
T ss_dssp CCSSCCCEEEECCCTTCCHHHHHHTTTT
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHh
Confidence 3445567999999999999999999964
No 237
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=93.34 E-value=0.057 Score=34.14 Aligned_cols=28 Identities=11% Similarity=0.176 Sum_probs=23.9
Q ss_pred CCCCcceeEeeecCCCCCchhhhhhhcc
Q 043011 105 TRHITSSVPVSLVASELNIPGLHSCFMT 132 (133)
Q Consensus 105 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~ 132 (133)
......+|+|+|||..++..+|+++|..
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~ 38 (103)
T 2cq0_A 11 RADDNATIRVTNLSEDTRETDLQELFRP 38 (103)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHTTSTT
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHh
Confidence 3445577999999999999999999964
No 238
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=93.30 E-value=0.069 Score=33.05 Aligned_cols=29 Identities=14% Similarity=0.016 Sum_probs=24.4
Q ss_pred CCCCCcceeEeeecCCCCCchhhhhhhcc
Q 043011 104 ATRHITSSVPVSLVASELNIPGLHSCFMT 132 (133)
Q Consensus 104 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~ 132 (133)
.......+|+|+|||..++..+|+++|..
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~ 38 (95)
T 2cqc_A 10 ANPDPNCCLGVFGLSLYTTERDLREVFSK 38 (95)
T ss_dssp CSCCGGGCEEEESCCSSCCHHHHHHHHHT
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHh
Confidence 34455677999999999999999999964
No 239
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=93.29 E-value=0.044 Score=36.09 Aligned_cols=36 Identities=8% Similarity=-0.106 Sum_probs=21.8
Q ss_pred eeEEEEeeecCCCCCCCCCcceeEeeecCCCCCchhhhhhhc
Q 043011 90 RFLHISYSVLEDSPATRHITSSVPVSLVASELNIPGLHSCFM 131 (133)
Q Consensus 90 r~l~V~~a~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~ 131 (133)
.++.+.|+.+.. ...+|+|+|||..++..+|+++|.
T Consensus 15 ~~~~~~~~~~p~------~~~~l~VgnLp~~~te~dL~~~F~ 50 (111)
T 2jvr_A 15 VPRGSHMSKLPA------KRYRITMKNLPEGCSWQDLKDLAR 50 (111)
T ss_dssp ----------CC------CCEEEEEECSSCCCCHHHHHHHHH
T ss_pred eecchhcCCCCC------CCCEEEEECCCCCCCHHHHHHHHH
Confidence 456677775433 234699999999999999999996
No 240
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.28 E-value=0.059 Score=33.28 Aligned_cols=26 Identities=23% Similarity=0.093 Sum_probs=22.5
Q ss_pred CCcceeEeeecCCCCCchhhhhhhcc
Q 043011 107 HITSSVPVSLVASELNIPGLHSCFMT 132 (133)
Q Consensus 107 ~~~~~l~v~nl~~~~~~~~l~~~f~~ 132 (133)
....+|+|+|||..++..+|+++|..
T Consensus 7 ~~~~~l~V~nlp~~~t~~~l~~~F~~ 32 (90)
T 2dnp_A 7 GNTWKIFVGNVSAACTSQELRSLFER 32 (90)
T ss_dssp CCSCCEEEESCCTTCCHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHc
Confidence 34567999999999999999999963
No 241
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=93.27 E-value=0.073 Score=33.76 Aligned_cols=28 Identities=21% Similarity=0.248 Sum_probs=23.6
Q ss_pred CCCCcceeEeeecCCCCCchhhhhhhcc
Q 043011 105 TRHITSSVPVSLVASELNIPGLHSCFMT 132 (133)
Q Consensus 105 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~ 132 (133)
......+|+|+|||..++..+|+++|..
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~ 38 (107)
T 2cph_A 11 KKQTTSKILVRNIPFQANQREIRELFST 38 (107)
T ss_dssp CSSCCCCEEEESCCTTCCHHHHHHHHHT
T ss_pred cCCCCCEEEEeCCCCcCCHHHHHHHHHc
Confidence 3445567999999999999999999964
No 242
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=93.26 E-value=0.063 Score=34.00 Aligned_cols=28 Identities=21% Similarity=0.287 Sum_probs=23.9
Q ss_pred CCCCcceeEeeecCCCCCchhhhhhhcc
Q 043011 105 TRHITSSVPVSLVASELNIPGLHSCFMT 132 (133)
Q Consensus 105 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~ 132 (133)
......+|+|+|||..++..+|+++|..
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~ 38 (105)
T 1x5u_A 11 ERNQDATVYVGGLDEKVSEPLLWELFLQ 38 (105)
T ss_dssp CCCTTTEEEEECCCTTCCHHHHHHHHHT
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHh
Confidence 4445577999999999999999999964
No 243
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=93.13 E-value=0.059 Score=34.22 Aligned_cols=28 Identities=14% Similarity=0.196 Sum_probs=23.5
Q ss_pred CCCCcceeEeeecCCCCCchhhhhhhcc
Q 043011 105 TRHITSSVPVSLVASELNIPGLHSCFMT 132 (133)
Q Consensus 105 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~ 132 (133)
......+|+|+|||..++..+|+++|..
T Consensus 9 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~ 36 (106)
T 2dgp_A 9 KDHDAIKLFIGQIPRNLDEKDLKPLFEE 36 (106)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHh
Confidence 3445567999999999999999999963
No 244
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=93.13 E-value=0.46 Score=28.62 Aligned_cols=69 Identities=12% Similarity=0.190 Sum_probs=45.0
Q ss_pred eEEEeccCCCCCCCHHHHHHHhhcCC-----CeeEEEEcCCCCCeEEEEECCHHHHHHHHHHhcCCCCCCCCCeeEEEEe
Q 043011 22 NLFVANCGPAVGVSYEAIGSVFSAFG-----DVKGIYAADDSGARVIVSYFDEGSAQAAFNSLHSRPCPDLANRFLHISY 96 (133)
Q Consensus 22 ~L~V~Nl~~~~~vte~~L~~~F~~fG-----~V~~v~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~~~~l~gr~l~V~~ 96 (133)
+|++ |++...+++..+|-.++..-+ +|-.|.+ ...|+||+-. .+.|..+++.|++.. +.|+.+.|+.
T Consensus 2 ~~~i-~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i---~d~~s~v~v~-~~~~~~~~~~l~~~~---i~g~~~~v~~ 73 (76)
T 2g0c_A 2 KLYF-NGGKKKKIRAVDFVGTIAKIDGVSADDIGIITI---MDNASYVEIL-NGKGPHVLKVMKNTT---VKGKQLKVNK 73 (76)
T ss_dssp EEEE-SCCCC----CHHHHHHHHTSTTCCGGGEEEEEE---CSSCEEEEEC-TTCHHHHHHHHTTCC---C---CCCEEE
T ss_pred EEEE-eCCCccCCCHHHHHHHHHHccCCChhhccEEEE---eCCcEEEEEC-HHHHHHHHHHhcccc---CcCceEEEEE
Confidence 5677 466555677777766665444 4667777 4558899884 566888999999999 9999999886
Q ss_pred ee
Q 043011 97 SV 98 (133)
Q Consensus 97 a~ 98 (133)
+.
T Consensus 74 ~~ 75 (76)
T 2g0c_A 74 AN 75 (76)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 245
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=93.11 E-value=0.04 Score=35.21 Aligned_cols=23 Identities=17% Similarity=0.312 Sum_probs=20.9
Q ss_pred ceeEeeecCCCCCchhhhhhhcc
Q 043011 110 SSVPVSLVASELNIPGLHSCFMT 132 (133)
Q Consensus 110 ~~l~v~nl~~~~~~~~l~~~f~~ 132 (133)
.+|+|+|||.+++..+|+++|..
T Consensus 20 t~lfV~nLp~~~te~~L~~~F~~ 42 (99)
T 4fxv_A 20 TNLIVNYLPQNMTQDELRSLFSS 42 (99)
T ss_dssp SEEEEESCCTTCCHHHHHHHHHT
T ss_pred CEEEEeCCCCCCCHHHHHHHHHh
Confidence 35999999999999999999964
No 246
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=93.07 E-value=0.089 Score=33.02 Aligned_cols=27 Identities=11% Similarity=0.086 Sum_probs=23.3
Q ss_pred CCCcceeEeeecCCCCCchhhhhhhcc
Q 043011 106 RHITSSVPVSLVASELNIPGLHSCFMT 132 (133)
Q Consensus 106 ~~~~~~l~v~nl~~~~~~~~l~~~f~~ 132 (133)
.....+|+|+|||..++..+|+++|..
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~ 38 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEK 38 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTST
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhh
Confidence 345567999999999999999999974
No 247
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.03 E-value=0.088 Score=33.05 Aligned_cols=28 Identities=11% Similarity=-0.073 Sum_probs=23.8
Q ss_pred CCCCcceeEeeecCCCCCchhhhhhhcc
Q 043011 105 TRHITSSVPVSLVASELNIPGLHSCFMT 132 (133)
Q Consensus 105 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~ 132 (133)
......+|+|+|||..++..+|+++|..
T Consensus 13 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~ 40 (100)
T 2do4_A 13 TSLEKHKLFISGLPFSCTKEELEEICKA 40 (100)
T ss_dssp SCCCCSCEEEESCCTTCCHHHHHHHHTT
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHh
Confidence 3445567999999999999999999974
No 248
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=92.94 E-value=0.095 Score=32.89 Aligned_cols=27 Identities=7% Similarity=-0.106 Sum_probs=23.3
Q ss_pred CCCcceeEeeecCCCCCchhhhhhhcc
Q 043011 106 RHITSSVPVSLVASELNIPGLHSCFMT 132 (133)
Q Consensus 106 ~~~~~~l~v~nl~~~~~~~~l~~~f~~ 132 (133)
.....+|+|+||+..++..+|+++|..
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~ 38 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTSEEMIEKEFNN 38 (99)
T ss_dssp SSCCCEEEEESCCTTCCHHHHHHHHHT
T ss_pred cCCcCEEEEeCCCCCCCHHHHHHHHHh
Confidence 345567999999999999999999964
No 249
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=92.94 E-value=0.098 Score=32.83 Aligned_cols=28 Identities=11% Similarity=0.189 Sum_probs=23.5
Q ss_pred CCCCcceeEeeecCCCCCchhhhhhhcc
Q 043011 105 TRHITSSVPVSLVASELNIPGLHSCFMT 132 (133)
Q Consensus 105 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~ 132 (133)
......+|+|+||+..++..+|+++|..
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~ 36 (99)
T 2la6_A 9 SHSDNNTIFVQGLGENVTIESVADYFKQ 36 (99)
T ss_dssp SCCCCSEEEEECCCSSCCHHHHHHHHTT
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHH
Confidence 3444567999999999999999999964
No 250
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=92.85 E-value=0.046 Score=35.37 Aligned_cols=28 Identities=11% Similarity=-0.035 Sum_probs=23.6
Q ss_pred CCCCcceeEeeecCCCCCchhhhhhhcc
Q 043011 105 TRHITSSVPVSLVASELNIPGLHSCFMT 132 (133)
Q Consensus 105 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~ 132 (133)
......+|+|+|||..++..+|+++|..
T Consensus 22 ~~~~~~~l~V~nLp~~~te~~l~~~F~~ 49 (108)
T 2jrs_A 22 GSAGPMRLYVGSLHFNITEDMLRGIFEP 49 (108)
T ss_dssp SCSSCEEEEEECCCSSCCHHHHHHHHTT
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHh
Confidence 3445567999999999999999999964
No 251
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=92.84 E-value=0.099 Score=33.12 Aligned_cols=25 Identities=4% Similarity=0.029 Sum_probs=22.3
Q ss_pred CcceeEeeecCCCCCchhhhhhhcc
Q 043011 108 ITSSVPVSLVASELNIPGLHSCFMT 132 (133)
Q Consensus 108 ~~~~l~v~nl~~~~~~~~l~~~f~~ 132 (133)
...+|+|+|||..++..+|+++|..
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~ 38 (104)
T 1wi8_A 14 PPYTAFLGNLPYDVTEESIKEFFRG 38 (104)
T ss_dssp SCEEEEEESCCSSCCHHHHHHHTTT
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHH
Confidence 4467999999999999999999975
No 252
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=92.82 E-value=0.066 Score=34.70 Aligned_cols=27 Identities=15% Similarity=0.150 Sum_probs=23.2
Q ss_pred CCCcceeEeeecCCCCCchhhhhhhcc
Q 043011 106 RHITSSVPVSLVASELNIPGLHSCFMT 132 (133)
Q Consensus 106 ~~~~~~l~v~nl~~~~~~~~l~~~f~~ 132 (133)
.....+|+|+||+..++..+|+++|..
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~ 63 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLP 63 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh
Confidence 344567999999999999999999974
No 253
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.81 E-value=0.098 Score=32.75 Aligned_cols=27 Identities=11% Similarity=0.209 Sum_probs=23.0
Q ss_pred CCCcceeEeeecCCCCCchhhhhhhcc
Q 043011 106 RHITSSVPVSLVASELNIPGLHSCFMT 132 (133)
Q Consensus 106 ~~~~~~l~v~nl~~~~~~~~l~~~f~~ 132 (133)
.....+|+|+|||..++..+|+++|..
T Consensus 16 ~~~~~~l~V~nL~~~~t~~~l~~~F~~ 42 (97)
T 2e5j_A 16 APLAADVYVGNLPRDARVSDLKRALRE 42 (97)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCcCcHHHHHHHHHh
Confidence 334567999999999999999999964
No 254
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.81 E-value=0.084 Score=32.65 Aligned_cols=27 Identities=26% Similarity=0.123 Sum_probs=23.1
Q ss_pred CCCcceeEeeecCCCCCchhhhhhhcc
Q 043011 106 RHITSSVPVSLVASELNIPGLHSCFMT 132 (133)
Q Consensus 106 ~~~~~~l~v~nl~~~~~~~~l~~~f~~ 132 (133)
.....+|+|+|||..++..+|+++|..
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~f~~ 39 (94)
T 2e5h_A 13 APSKSTVYVSNLPFSLTNNDLYRIFSK 39 (94)
T ss_dssp CCCTTSEEEESCCTTSCHHHHHHHTTT
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHh
Confidence 344567999999999999999999974
No 255
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=92.80 E-value=0.092 Score=33.49 Aligned_cols=27 Identities=7% Similarity=-0.026 Sum_probs=23.1
Q ss_pred CCCcceeEeeecCCCCCchhhhhhhcc
Q 043011 106 RHITSSVPVSLVASELNIPGLHSCFMT 132 (133)
Q Consensus 106 ~~~~~~l~v~nl~~~~~~~~l~~~f~~ 132 (133)
.....+|+|+|||..++..+|+++|..
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~ 38 (111)
T 1x4h_A 12 VTEGKTVFIRNLSFDSEEEALGEVLQQ 38 (111)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHT
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHh
Confidence 344567999999999999999999964
No 256
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=92.77 E-value=0.088 Score=33.24 Aligned_cols=27 Identities=22% Similarity=0.091 Sum_probs=23.0
Q ss_pred CCCcceeEeeecCCCCCchhhhhhhcc
Q 043011 106 RHITSSVPVSLVASELNIPGLHSCFMT 132 (133)
Q Consensus 106 ~~~~~~l~v~nl~~~~~~~~l~~~f~~ 132 (133)
.....+|+|+|||..++..+|+++|..
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~ 38 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFST 38 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGG
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHh
Confidence 344567999999999999999999964
No 257
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=92.75 E-value=0.087 Score=33.84 Aligned_cols=28 Identities=14% Similarity=0.166 Sum_probs=23.8
Q ss_pred CCCCcceeEeeecCCCCCchhhhhhhcc
Q 043011 105 TRHITSSVPVSLVASELNIPGLHSCFMT 132 (133)
Q Consensus 105 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~ 132 (133)
+.....+|+|+|||..++..+|+++|..
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~ 38 (113)
T 2cpe_A 11 EDSDNSAIYVQGLNDSVTLDDLADFFKQ 38 (113)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHHTT
T ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHHHh
Confidence 3445578999999999999999999964
No 258
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=92.73 E-value=0.087 Score=34.06 Aligned_cols=28 Identities=11% Similarity=0.024 Sum_probs=23.8
Q ss_pred CCCCcceeEeeecCCCCCchhhhhhhcc
Q 043011 105 TRHITSSVPVSLVASELNIPGLHSCFMT 132 (133)
Q Consensus 105 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~ 132 (133)
+.....+|+|+|||..++..+|+++|..
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~ 40 (116)
T 2cqd_A 13 KDTTFTKIFVGGLPYHTTDASLRKYFEG 40 (116)
T ss_dssp CSCSSSEEEEECCCSSCCHHHHHHHHHT
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHh
Confidence 3445577999999999999999999974
No 259
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=92.72 E-value=0.079 Score=34.15 Aligned_cols=28 Identities=14% Similarity=0.163 Sum_probs=23.9
Q ss_pred CCCCcceeEeeecCCCCCchhhhhhhcc
Q 043011 105 TRHITSSVPVSLVASELNIPGLHSCFMT 132 (133)
Q Consensus 105 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~ 132 (133)
......+|+|+||+..++..+|+++|..
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~ 38 (115)
T 2dgo_A 11 DTSNHFHVFVGDLSPEITTEDIKAAFAP 38 (115)
T ss_dssp CSTTCEEEEEESCCTTCCHHHHHHHHGG
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHh
Confidence 3445577999999999999999999974
No 260
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=92.72 E-value=0.081 Score=35.20 Aligned_cols=27 Identities=0% Similarity=0.107 Sum_probs=23.3
Q ss_pred CCCcceeEeeecCCCCCchhhhhhhcc
Q 043011 106 RHITSSVPVSLVASELNIPGLHSCFMT 132 (133)
Q Consensus 106 ~~~~~~l~v~nl~~~~~~~~l~~~f~~ 132 (133)
.....+|+|+||+..++..+|+++|..
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~ 46 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAP 46 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGG
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHH
Confidence 345567999999999999999999974
No 261
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=92.71 E-value=0.09 Score=34.11 Aligned_cols=27 Identities=0% Similarity=-0.034 Sum_probs=23.3
Q ss_pred CCCcceeEeeecCCCCCchhhhhhhcc
Q 043011 106 RHITSSVPVSLVASELNIPGLHSCFMT 132 (133)
Q Consensus 106 ~~~~~~l~v~nl~~~~~~~~l~~~f~~ 132 (133)
.....+|+|+|||..++..+|+++|..
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~ 38 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEG 38 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTT
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHh
Confidence 344567999999999999999999964
No 262
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=92.70 E-value=0.092 Score=32.89 Aligned_cols=26 Identities=12% Similarity=0.111 Sum_probs=22.8
Q ss_pred CCcceeEeeecCCCCCchhhhhhhcc
Q 043011 107 HITSSVPVSLVASELNIPGLHSCFMT 132 (133)
Q Consensus 107 ~~~~~l~v~nl~~~~~~~~l~~~f~~ 132 (133)
....+|+|+|||..++..+|+++|..
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~ 33 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKK 33 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh
Confidence 44567999999999999999999974
No 263
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=92.69 E-value=0.085 Score=33.73 Aligned_cols=27 Identities=7% Similarity=0.198 Sum_probs=23.1
Q ss_pred CCCcceeEeeecCCCCCchhhhhhhcc
Q 043011 106 RHITSSVPVSLVASELNIPGLHSCFMT 132 (133)
Q Consensus 106 ~~~~~~l~v~nl~~~~~~~~l~~~f~~ 132 (133)
.....+|+|+|||..++..+|+++|..
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~ 45 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYK 45 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGG
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh
Confidence 334567999999999999999999974
No 264
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=92.69 E-value=0.089 Score=33.98 Aligned_cols=27 Identities=15% Similarity=0.133 Sum_probs=23.0
Q ss_pred CCCcceeEeeecCCCCCchhhhhhhcc
Q 043011 106 RHITSSVPVSLVASELNIPGLHSCFMT 132 (133)
Q Consensus 106 ~~~~~~l~v~nl~~~~~~~~l~~~f~~ 132 (133)
.....+|+|+||+..++..+|+++|..
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~F~~ 48 (115)
T 2cpz_A 22 GPEGANLFIYHLPQEFGDQDLLQMFMP 48 (115)
T ss_dssp CSTTCCEEEESCCSSCCHHHHHHHHGG
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHh
Confidence 334467999999999999999999974
No 265
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=92.67 E-value=0.065 Score=34.54 Aligned_cols=27 Identities=7% Similarity=0.075 Sum_probs=23.2
Q ss_pred CCCcceeEeeecCCCCCchhhhhhhcc
Q 043011 106 RHITSSVPVSLVASELNIPGLHSCFMT 132 (133)
Q Consensus 106 ~~~~~~l~v~nl~~~~~~~~l~~~f~~ 132 (133)
.....+|+|+|||.+++..+|+++|..
T Consensus 8 ~~~~~~lfV~~Lp~~~te~~L~~~F~~ 34 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDATLDDIKEWLED 34 (103)
T ss_dssp CSGGGCEEEECCCTTCCHHHHHHHHHT
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHhh
Confidence 344578999999999999999999964
No 266
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=92.66 E-value=0.058 Score=34.40 Aligned_cols=24 Identities=4% Similarity=0.145 Sum_probs=21.6
Q ss_pred cceeEeeecCCCCCchhhhhhhcc
Q 043011 109 TSSVPVSLVASELNIPGLHSCFMT 132 (133)
Q Consensus 109 ~~~l~v~nl~~~~~~~~l~~~f~~ 132 (133)
-.||+|+|||+.++..+|+++|..
T Consensus 9 m~tlfV~nL~~~~tee~L~~~F~~ 32 (95)
T 2lkz_A 9 MDTIILRNIAPHTVVDSIMTALSP 32 (95)
T ss_dssp CCEEEEESCCTTCCHHHHHHHSTT
T ss_pred cCEEEEeCCCCcCCHHHHHHHHHh
Confidence 356999999999999999999974
No 267
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.63 E-value=0.096 Score=32.56 Aligned_cols=24 Identities=13% Similarity=0.146 Sum_probs=21.5
Q ss_pred CcceeEeeecCCCCCchhhhhhhc
Q 043011 108 ITSSVPVSLVASELNIPGLHSCFM 131 (133)
Q Consensus 108 ~~~~l~v~nl~~~~~~~~l~~~f~ 131 (133)
...+|+|+|||..++..+|+++|.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~ 37 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLV 37 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHH
Confidence 346799999999999999999996
No 268
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=92.59 E-value=0.044 Score=39.30 Aligned_cols=62 Identities=10% Similarity=0.029 Sum_probs=39.7
Q ss_pred CHHHHHHHHHHh--cCCCCCCCCCeeEEEEeeecCC-CCC-----CCCCcceeEeeecCCCCCchhhhhhhcc
Q 043011 68 DEGSAQAAFNSL--HSRPCPDLANRFLHISYSVLED-SPA-----TRHITSSVPVSLVASELNIPGLHSCFMT 132 (133)
Q Consensus 68 ~~~~A~~A~~~l--~g~~~~~l~gr~l~V~~a~~~~-~~~-----~~~~~~~l~v~nl~~~~~~~~l~~~f~~ 132 (133)
+.+....|+... .... +.+....|.-....+ |.. +.....+|+|+|||..++..+|+++|..
T Consensus 63 d~~~I~~Al~~S~~~~le---v~ed~~~vrR~~~~p~p~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~ 132 (193)
T 2voo_A 63 DFNVIVEALSKSKAELME---ISEDKTKIRRSPSKPLPEVTDEYKNDVKNRSVYIKGFPTDATLDDIKEWLED 132 (193)
T ss_dssp CHHHHHHHHHTCSSCCEE---ECTTSSEEEECTTSCCCCCCHHHHHHHHHTEEEEECCCTTCCHHHHHHHHTT
T ss_pred CHHHHHHHHhhcccceEE---EecccceEEecccCCCcccchhhhhccccCEEEecCCCCcCCHHHHHHHHhc
Confidence 566777777665 3334 555555555442222 111 1223478999999999999999999964
No 269
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=92.59 E-value=0.073 Score=32.99 Aligned_cols=27 Identities=15% Similarity=0.122 Sum_probs=23.2
Q ss_pred CCCcceeEeeecCCCCCchhhhhhhcc
Q 043011 106 RHITSSVPVSLVASELNIPGLHSCFMT 132 (133)
Q Consensus 106 ~~~~~~l~v~nl~~~~~~~~l~~~f~~ 132 (133)
.....+|+|+|||..++..+|+++|..
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~ 39 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQ 39 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGG
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHh
Confidence 344567999999999999999999974
No 270
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=92.58 E-value=0.11 Score=32.84 Aligned_cols=26 Identities=8% Similarity=-0.031 Sum_probs=22.7
Q ss_pred CCcceeEeeecCCCCCchhhhhhhcc
Q 043011 107 HITSSVPVSLVASELNIPGLHSCFMT 132 (133)
Q Consensus 107 ~~~~~l~v~nl~~~~~~~~l~~~f~~ 132 (133)
....+|+|+|||..++..+|+++|..
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~ 38 (103)
T 2dng_A 13 EPPYTAYVGNLPFNTVQGDIDAIFKD 38 (103)
T ss_dssp SSCEEEEEESCCTTCCHHHHHHHTTT
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHh
Confidence 34467999999999999999999974
No 271
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=92.55 E-value=0.089 Score=33.09 Aligned_cols=26 Identities=12% Similarity=0.088 Sum_probs=22.8
Q ss_pred CCcceeEeeecCCCCCchhhhhhhcc
Q 043011 107 HITSSVPVSLVASELNIPGLHSCFMT 132 (133)
Q Consensus 107 ~~~~~l~v~nl~~~~~~~~l~~~f~~ 132 (133)
....+|+|+|||..++..+|+++|..
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~ 38 (101)
T 2fc9_A 13 GESKTLVLSNLSYSATEETLQEVFEK 38 (101)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHCSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh
Confidence 34567999999999999999999964
No 272
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=92.53 E-value=0.088 Score=33.25 Aligned_cols=27 Identities=7% Similarity=0.018 Sum_probs=23.1
Q ss_pred CCCcceeEeeecCCCCCchhhhhhhcc
Q 043011 106 RHITSSVPVSLVASELNIPGLHSCFMT 132 (133)
Q Consensus 106 ~~~~~~l~v~nl~~~~~~~~l~~~f~~ 132 (133)
.....+|+|+|||..++..+|+++|..
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~ 38 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQ 38 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHh
Confidence 344567999999999999999999963
No 273
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=92.49 E-value=0.062 Score=35.26 Aligned_cols=24 Identities=4% Similarity=-0.017 Sum_probs=21.4
Q ss_pred CcceeEeeecCCCCCchhhhhhhc
Q 043011 108 ITSSVPVSLVASELNIPGLHSCFM 131 (133)
Q Consensus 108 ~~~~l~v~nl~~~~~~~~l~~~f~ 131 (133)
...+|+|+|||..++..+|+++|.
T Consensus 15 ~~~~LfV~nLp~~vte~dL~~lF~ 38 (105)
T 1sjq_A 15 PSRVIHIRKLPIDVTEGEVISLGL 38 (105)
T ss_dssp CCCEEEECSCCTTSCHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHH
Confidence 345699999999999999999996
No 274
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.45 E-value=0.1 Score=32.48 Aligned_cols=24 Identities=25% Similarity=0.228 Sum_probs=21.6
Q ss_pred cceeEeeecCCCCCchhhhhhhcc
Q 043011 109 TSSVPVSLVASELNIPGLHSCFMT 132 (133)
Q Consensus 109 ~~~l~v~nl~~~~~~~~l~~~f~~ 132 (133)
..+|+|+|||..++..+|+++|..
T Consensus 8 ~~~l~V~nl~~~~t~~~l~~~F~~ 31 (94)
T 2e5g_A 8 LRSVFVSGFPRGVDSAQLSEYFLA 31 (94)
T ss_dssp CCEEEEECCCTTCCHHHHHHHGGG
T ss_pred CCEEEEECCCCCCCHHHHHHHHHh
Confidence 357999999999999999999974
No 275
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=92.41 E-value=0.083 Score=32.08 Aligned_cols=24 Identities=8% Similarity=-0.043 Sum_probs=21.6
Q ss_pred cceeEeeecCCCCCchhhhhhhcc
Q 043011 109 TSSVPVSLVASELNIPGLHSCFMT 132 (133)
Q Consensus 109 ~~~l~v~nl~~~~~~~~l~~~f~~ 132 (133)
..+|+|+|||..++..+|+++|..
T Consensus 5 ~~~l~v~nlp~~~t~~~l~~~f~~ 28 (85)
T 1x4e_A 5 SSGLYIRGLQPGTTDQDLVKLCQP 28 (85)
T ss_dssp CCEEEEESCCTTCCHHHHHTTSTT
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHh
Confidence 457999999999999999999964
No 276
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=92.40 E-value=0.091 Score=35.17 Aligned_cols=27 Identities=4% Similarity=-0.050 Sum_probs=23.1
Q ss_pred CCCcceeEeeecCCCCCchhhhhhhcc
Q 043011 106 RHITSSVPVSLVASELNIPGLHSCFMT 132 (133)
Q Consensus 106 ~~~~~~l~v~nl~~~~~~~~l~~~f~~ 132 (133)
.....+|+|+|||..++..+|+++|..
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~ 54 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLP 54 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh
Confidence 344567999999999999999999964
No 277
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=92.36 E-value=0.096 Score=33.18 Aligned_cols=28 Identities=18% Similarity=0.032 Sum_probs=23.7
Q ss_pred CCCCcceeEeeecCCCCCchhhhhhhcc
Q 043011 105 TRHITSSVPVSLVASELNIPGLHSCFMT 132 (133)
Q Consensus 105 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~ 132 (133)
......+|+|+||+..++..+|+++|..
T Consensus 19 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~ 46 (106)
T 1p27_B 19 RSVEGWILFVTGVHEEATEEDIHDKFAE 46 (106)
T ss_dssp CBTTBEEEEEECCCTTCCHHHHHHHHGG
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhc
Confidence 3445567999999999999999999964
No 278
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=92.31 E-value=0.085 Score=32.82 Aligned_cols=27 Identities=7% Similarity=0.080 Sum_probs=23.2
Q ss_pred CCCcceeEeeecCCCCCchhhhhhhcc
Q 043011 106 RHITSSVPVSLVASELNIPGLHSCFMT 132 (133)
Q Consensus 106 ~~~~~~l~v~nl~~~~~~~~l~~~f~~ 132 (133)
.....+|+|+|||..++..+|+++|..
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~ 39 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFED 39 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhh
Confidence 345577999999999999999999964
No 279
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=92.31 E-value=0.095 Score=33.92 Aligned_cols=27 Identities=11% Similarity=0.073 Sum_probs=23.1
Q ss_pred CCCcceeEeeecCCCCCchhhhhhhcc
Q 043011 106 RHITSSVPVSLVASELNIPGLHSCFMT 132 (133)
Q Consensus 106 ~~~~~~l~v~nl~~~~~~~~l~~~f~~ 132 (133)
.....+|+|+||+..++..+|+++|..
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~ 38 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEK 38 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh
Confidence 344567999999999999999999964
No 280
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=92.28 E-value=0.12 Score=33.30 Aligned_cols=29 Identities=17% Similarity=0.220 Sum_probs=24.5
Q ss_pred CCCCCcceeEeeecCCCCCchhhhhhhcc
Q 043011 104 ATRHITSSVPVSLVASELNIPGLHSCFMT 132 (133)
Q Consensus 104 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~ 132 (133)
.......+|+|+||+..++..+|+++|..
T Consensus 24 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~ 52 (109)
T 2err_A 24 ENKSQPKRLHVSNIPFRFRDPDLRQMFGQ 52 (109)
T ss_dssp SCTTCCCEEEEESCCTTCCHHHHHHHGGG
T ss_pred cCCCCCCEEEEECCCCcCCHHHHHHHHHh
Confidence 34455678999999999999999999974
No 281
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=92.25 E-value=0.12 Score=31.86 Aligned_cols=26 Identities=4% Similarity=-0.009 Sum_probs=22.5
Q ss_pred CCcceeEeeecCCCCCchhhhhhhcc
Q 043011 107 HITSSVPVSLVASELNIPGLHSCFMT 132 (133)
Q Consensus 107 ~~~~~l~v~nl~~~~~~~~l~~~f~~ 132 (133)
....+|+|+|||..++..+|+++|..
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~ 33 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAP 33 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTT
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhh
Confidence 34467999999999999999999964
No 282
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=92.24 E-value=0.13 Score=32.10 Aligned_cols=25 Identities=16% Similarity=0.109 Sum_probs=22.0
Q ss_pred CcceeEeeecCCCCCchhhhhhhcc
Q 043011 108 ITSSVPVSLVASELNIPGLHSCFMT 132 (133)
Q Consensus 108 ~~~~l~v~nl~~~~~~~~l~~~f~~ 132 (133)
...+|+|+|||..++..+|+++|..
T Consensus 16 ~~~~l~V~nlp~~~t~~~l~~~F~~ 40 (97)
T 1why_A 16 PTTRLWVGGLGPNTSLAALAREFDR 40 (97)
T ss_dssp CCSCEEEECCCSSCCHHHHHHHHHT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHh
Confidence 3457999999999999999999964
No 283
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=92.21 E-value=0.099 Score=31.62 Aligned_cols=25 Identities=24% Similarity=0.294 Sum_probs=22.2
Q ss_pred CcceeEeeecCCCCCchhhhhhhcc
Q 043011 108 ITSSVPVSLVASELNIPGLHSCFMT 132 (133)
Q Consensus 108 ~~~~l~v~nl~~~~~~~~l~~~f~~ 132 (133)
...+|+|+|||..++..+|+++|..
T Consensus 6 ~~~~l~V~nl~~~~~~~~l~~~f~~ 30 (85)
T 3mdf_A 6 TKRVLYVGGLAEEVDDKVLHAAFIP 30 (85)
T ss_dssp CSSEEEEECCCTTCCHHHHHHHHGG
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhc
Confidence 4467999999999999999999964
No 284
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=92.13 E-value=0.097 Score=32.41 Aligned_cols=25 Identities=8% Similarity=0.083 Sum_probs=21.9
Q ss_pred CcceeEeeecCCCCCchhhhhhhcc
Q 043011 108 ITSSVPVSLVASELNIPGLHSCFMT 132 (133)
Q Consensus 108 ~~~~l~v~nl~~~~~~~~l~~~f~~ 132 (133)
...+|+|+|||..++..+|+++|..
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~F~~ 31 (93)
T 2cqh_A 7 GMNKLYIGNLSPAVTADDLRQLFGD 31 (93)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHH
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHH
Confidence 3457999999999999999999964
No 285
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=92.12 E-value=0.095 Score=32.96 Aligned_cols=26 Identities=4% Similarity=0.049 Sum_probs=22.5
Q ss_pred CCcceeEeeecCCCCCchhhhhhhcc
Q 043011 107 HITSSVPVSLVASELNIPGLHSCFMT 132 (133)
Q Consensus 107 ~~~~~l~v~nl~~~~~~~~l~~~f~~ 132 (133)
....+|+|+|||..++..+|+++|..
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~ 40 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISE 40 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHH
Confidence 34567999999999999999999963
No 286
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=92.07 E-value=0.12 Score=32.52 Aligned_cols=26 Identities=23% Similarity=0.278 Sum_probs=22.7
Q ss_pred CCcceeEeeecCCCCCchhhhhhhcc
Q 043011 107 HITSSVPVSLVASELNIPGLHSCFMT 132 (133)
Q Consensus 107 ~~~~~l~v~nl~~~~~~~~l~~~f~~ 132 (133)
....+|+|+|||..++..+|+++|..
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~ 35 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIP 35 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhc
Confidence 34567999999999999999999974
No 287
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=92.04 E-value=0.11 Score=32.63 Aligned_cols=25 Identities=8% Similarity=0.024 Sum_probs=22.1
Q ss_pred CcceeEeeecCCCCCchhhhhhhcc
Q 043011 108 ITSSVPVSLVASELNIPGLHSCFMT 132 (133)
Q Consensus 108 ~~~~l~v~nl~~~~~~~~l~~~f~~ 132 (133)
...+|+|+||+..++..+|+++|..
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~ 50 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQN 50 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHT
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHh
Confidence 3467999999999999999999964
No 288
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=92.03 E-value=0.072 Score=32.40 Aligned_cols=24 Identities=8% Similarity=0.095 Sum_probs=21.5
Q ss_pred cceeEeeecCCCCCchhhhhhhcc
Q 043011 109 TSSVPVSLVASELNIPGLHSCFMT 132 (133)
Q Consensus 109 ~~~l~v~nl~~~~~~~~l~~~f~~ 132 (133)
..+|+|+|||..++..+|+++|..
T Consensus 6 ~~~l~V~nLp~~~t~~~l~~~F~~ 29 (87)
T 2hzc_A 6 ARRLYVGNIPFGITEEAMMDFFNA 29 (87)
T ss_dssp GGEEEEESCCTTCCHHHHHHHHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHH
Confidence 467999999999999999999963
No 289
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=92.02 E-value=0.14 Score=31.89 Aligned_cols=25 Identities=12% Similarity=0.121 Sum_probs=22.2
Q ss_pred CcceeEeeecCCCCCchhhhhhhcc
Q 043011 108 ITSSVPVSLVASELNIPGLHSCFMT 132 (133)
Q Consensus 108 ~~~~l~v~nl~~~~~~~~l~~~f~~ 132 (133)
...+|+|+|||..++..+|+++|..
T Consensus 14 ~~~~l~v~nLp~~~t~~~l~~~F~~ 38 (98)
T 2cqp_A 14 GPTIIKVQNMPFTVSIDEILDFFYG 38 (98)
T ss_dssp SSEEEEEESCCTTCCHHHHHHHTTT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHH
Confidence 4467999999999999999999974
No 290
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=92.01 E-value=0.099 Score=33.10 Aligned_cols=26 Identities=15% Similarity=0.061 Sum_probs=22.4
Q ss_pred CCcceeEeeecCCCCCchhhhhhhcc
Q 043011 107 HITSSVPVSLVASELNIPGLHSCFMT 132 (133)
Q Consensus 107 ~~~~~l~v~nl~~~~~~~~l~~~f~~ 132 (133)
....+|+|+|||..++..+|+++|..
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~ 34 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQ 34 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh
Confidence 34467999999999999999999963
No 291
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=92.01 E-value=0.11 Score=33.77 Aligned_cols=26 Identities=8% Similarity=-0.179 Sum_probs=22.5
Q ss_pred CCcceeEeeecCC-CCCchhhhhhhcc
Q 043011 107 HITSSVPVSLVAS-ELNIPGLHSCFMT 132 (133)
Q Consensus 107 ~~~~~l~v~nl~~-~~~~~~l~~~f~~ 132 (133)
....+|+|+|||. .++..+|+++|..
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~ 39 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEP 39 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGG
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHh
Confidence 3456799999999 9999999999963
No 292
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=91.99 E-value=0.092 Score=34.15 Aligned_cols=26 Identities=8% Similarity=0.020 Sum_probs=22.7
Q ss_pred CCcceeEeeecCCCCCchhhhhhhcc
Q 043011 107 HITSSVPVSLVASELNIPGLHSCFMT 132 (133)
Q Consensus 107 ~~~~~l~v~nl~~~~~~~~l~~~f~~ 132 (133)
....+|+|+|||..++..+|+++|..
T Consensus 19 ~ps~~l~V~NLp~~~te~~L~~lF~~ 44 (100)
T 3r27_A 19 PASPVVHIRGLIDGVVEADLVEALQE 44 (100)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHGG
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhc
Confidence 34567999999999999999999964
No 293
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=91.95 E-value=0.15 Score=33.67 Aligned_cols=27 Identities=4% Similarity=0.000 Sum_probs=23.0
Q ss_pred CCCcceeEeeecCCC-CCchhhhhhhcc
Q 043011 106 RHITSSVPVSLVASE-LNIPGLHSCFMT 132 (133)
Q Consensus 106 ~~~~~~l~v~nl~~~-~~~~~l~~~f~~ 132 (133)
.....+|+|+|||.+ ++..+|+++|..
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~ 49 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEP 49 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTT
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHh
Confidence 344567999999998 999999999964
No 294
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=91.93 E-value=0.077 Score=33.08 Aligned_cols=25 Identities=20% Similarity=0.210 Sum_probs=21.6
Q ss_pred CcceeEeeecCCCCCchhhhhhhcc
Q 043011 108 ITSSVPVSLVASELNIPGLHSCFMT 132 (133)
Q Consensus 108 ~~~~l~v~nl~~~~~~~~l~~~f~~ 132 (133)
...+|+|+|||.+++..+|+++|..
T Consensus 10 ~~~~l~V~~Lp~~~te~~L~~~F~~ 34 (89)
T 3d2w_A 10 HGSKVFVGRCTEDMTAEELQQFFCQ 34 (89)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHTT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhc
Confidence 3456999999999999999999964
No 295
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=91.86 E-value=0.088 Score=33.35 Aligned_cols=28 Identities=14% Similarity=-0.006 Sum_probs=23.8
Q ss_pred CCCCcceeEeeecCCCCCchhhhhhhcc
Q 043011 105 TRHITSSVPVSLVASELNIPGLHSCFMT 132 (133)
Q Consensus 105 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~ 132 (133)
......+|+|+|||..++..+|+++|..
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~ 39 (105)
T 2dh8_A 12 GADEIGKLFVGGLDWSTTQETLRSYFSQ 39 (105)
T ss_dssp CSSSSSEECCBSCCTTCCHHHHHHHHHT
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHh
Confidence 3445577999999999999999999964
No 296
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=91.82 E-value=0.11 Score=31.92 Aligned_cols=25 Identities=12% Similarity=0.022 Sum_probs=22.0
Q ss_pred CcceeEeeecCCCCCchhhhhhhcc
Q 043011 108 ITSSVPVSLVASELNIPGLHSCFMT 132 (133)
Q Consensus 108 ~~~~l~v~nl~~~~~~~~l~~~f~~ 132 (133)
...+|+|+|||..++..+|+++|..
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~f~~ 31 (92)
T 2dgv_A 7 GACQIFVRNLPFDFTWKMLKDKFNE 31 (92)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHT
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHh
Confidence 3457999999999999999999974
No 297
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=91.81 E-value=0.1 Score=34.23 Aligned_cols=26 Identities=12% Similarity=0.106 Sum_probs=22.5
Q ss_pred CCcceeEeeecCCCCCchhhhhhhcc
Q 043011 107 HITSSVPVSLVASELNIPGLHSCFMT 132 (133)
Q Consensus 107 ~~~~~l~v~nl~~~~~~~~l~~~f~~ 132 (133)
....+|+|+||+..++..+|+++|..
T Consensus 33 ~~~~~l~V~nlp~~~t~~~l~~~F~~ 58 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGVSDADIQELFAE 58 (124)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHHHT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh
Confidence 34467999999999999999999964
No 298
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=91.79 E-value=0.12 Score=31.86 Aligned_cols=25 Identities=12% Similarity=0.038 Sum_probs=22.1
Q ss_pred CcceeEeeecCCCCCchhhhhhhcc
Q 043011 108 ITSSVPVSLVASELNIPGLHSCFMT 132 (133)
Q Consensus 108 ~~~~l~v~nl~~~~~~~~l~~~f~~ 132 (133)
...+|+|+|||..++..+|+++|..
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~ 31 (90)
T 2dnq_A 7 GMVKLFIGNLPREATEQEIRSLFEQ 31 (90)
T ss_dssp CCEEEEEESCCSSCCHHHHHHHHHT
T ss_pred CCeEEEEeCCCCCCCHHHHHHHHHh
Confidence 4467999999999999999999964
No 299
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=91.79 E-value=0.081 Score=33.45 Aligned_cols=28 Identities=4% Similarity=0.057 Sum_probs=21.5
Q ss_pred CCCCcceeEeeecCCCCCchhhhhhhcc
Q 043011 105 TRHITSSVPVSLVASELNIPGLHSCFMT 132 (133)
Q Consensus 105 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~ 132 (133)
......+|+|+||+..++..+|+++|..
T Consensus 15 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~ 42 (100)
T 2j76_E 15 PKSPPYTAFLGNLPYDVTEESIKEFFRG 42 (100)
T ss_dssp -----CEEEESCCSSCCSSSHHHHHSCS
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHh
Confidence 3445577999999999999999999964
No 300
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=91.73 E-value=0.13 Score=32.96 Aligned_cols=24 Identities=17% Similarity=0.062 Sum_probs=21.6
Q ss_pred cceeEeeecCCCCCchhhhhhhcc
Q 043011 109 TSSVPVSLVASELNIPGLHSCFMT 132 (133)
Q Consensus 109 ~~~l~v~nl~~~~~~~~l~~~f~~ 132 (133)
..+|+|+|||..++..+|+++|..
T Consensus 15 ~~~l~V~nLp~~~t~~~l~~~F~~ 38 (108)
T 1x4c_A 15 ENRVVVSGLPPSGSWQDLKDHMRE 38 (108)
T ss_dssp CCEEEEESCCSSCCHHHHHHHHGG
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHh
Confidence 456999999999999999999974
No 301
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=91.72 E-value=0.11 Score=33.04 Aligned_cols=27 Identities=11% Similarity=0.069 Sum_probs=23.1
Q ss_pred CCCcceeEeeecCCCCCchhhhhhhcc
Q 043011 106 RHITSSVPVSLVASELNIPGLHSCFMT 132 (133)
Q Consensus 106 ~~~~~~l~v~nl~~~~~~~~l~~~f~~ 132 (133)
.....+|+|+|||..++..+|+++|..
T Consensus 26 ~~~~~~l~V~nlp~~~t~~~l~~~F~~ 52 (107)
T 3ulh_A 26 VETGGKLLVSNLDFGVSDADIQELFAE 52 (107)
T ss_dssp CCCSEEEEEESCCTTCCHHHHHHHHHT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh
Confidence 344567999999999999999999964
No 302
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=91.71 E-value=0.11 Score=32.40 Aligned_cols=25 Identities=12% Similarity=0.117 Sum_probs=22.1
Q ss_pred CcceeEeeecCCCCCchhhhhhhcc
Q 043011 108 ITSSVPVSLVASELNIPGLHSCFMT 132 (133)
Q Consensus 108 ~~~~l~v~nl~~~~~~~~l~~~f~~ 132 (133)
...+|+|+|||..++..+|+++|..
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~ 32 (99)
T 2div_A 8 MAASLWMGDLEPYMDENFISRAFAT 32 (99)
T ss_dssp SSSEEEECSCCTTCCHHHHHHHHHH
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHH
Confidence 4467999999999999999999964
No 303
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=91.66 E-value=0.14 Score=34.79 Aligned_cols=25 Identities=4% Similarity=-0.035 Sum_probs=22.1
Q ss_pred CcceeEeeecCCCCCchhhhhhhcc
Q 043011 108 ITSSVPVSLVASELNIPGLHSCFMT 132 (133)
Q Consensus 108 ~~~~l~v~nl~~~~~~~~l~~~f~~ 132 (133)
...+|+|+|||.+++..+|+++|..
T Consensus 43 ~~~~lfVgnLp~~~te~dL~~~F~~ 67 (136)
T 2hgl_A 43 EGFVVKLRGLPWSCSVEDVQNFLSD 67 (136)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHTTT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHH
Confidence 3456999999999999999999964
No 304
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=91.55 E-value=0.14 Score=32.86 Aligned_cols=25 Identities=20% Similarity=0.212 Sum_probs=22.2
Q ss_pred CcceeEeeecCCCCCchhhhhhhcc
Q 043011 108 ITSSVPVSLVASELNIPGLHSCFMT 132 (133)
Q Consensus 108 ~~~~l~v~nl~~~~~~~~l~~~f~~ 132 (133)
...+|+|+||+..++..+|+++|..
T Consensus 14 ~~~~l~V~nlp~~~~~~~l~~~f~~ 38 (114)
T 2do0_A 14 LGSTVFVANLDYKVGWKKLKEVFSM 38 (114)
T ss_dssp CCSCEEEESCCTTCCHHHHHHHHTT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHh
Confidence 4467999999999999999999974
No 305
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=91.51 E-value=0.15 Score=32.73 Aligned_cols=26 Identities=8% Similarity=0.098 Sum_probs=22.7
Q ss_pred CCcceeEeeecCCCCCchhhhhhhcc
Q 043011 107 HITSSVPVSLVASELNIPGLHSCFMT 132 (133)
Q Consensus 107 ~~~~~l~v~nl~~~~~~~~l~~~f~~ 132 (133)
....+|+|+|||..++..+|+++|..
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~ 48 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKP 48 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh
Confidence 34567999999999999999999974
No 306
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=91.42 E-value=0.13 Score=32.31 Aligned_cols=26 Identities=15% Similarity=0.091 Sum_probs=22.5
Q ss_pred CCcceeEeeecCCCCCchhhhhhhcc
Q 043011 107 HITSSVPVSLVASELNIPGLHSCFMT 132 (133)
Q Consensus 107 ~~~~~l~v~nl~~~~~~~~l~~~f~~ 132 (133)
....+|+|+|||..++..+|+++|..
T Consensus 10 ~~~~~l~v~nLp~~~t~~~l~~~f~~ 35 (102)
T 1x5s_A 10 SDEGKLFVGGLSFDTNEQSLEQVFSK 35 (102)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHh
Confidence 34567999999999999999999963
No 307
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=91.40 E-value=0.099 Score=33.47 Aligned_cols=24 Identities=17% Similarity=0.267 Sum_probs=21.6
Q ss_pred cceeEeeecCCCCCchhhhhhhcc
Q 043011 109 TSSVPVSLVASELNIPGLHSCFMT 132 (133)
Q Consensus 109 ~~~l~v~nl~~~~~~~~l~~~f~~ 132 (133)
...|+|+||++.++..+|++||+.
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q 30 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQ 30 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHH
T ss_pred cceEEEeCCCccCCHHHHHHHHHh
Confidence 356999999999999999999983
No 308
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=91.39 E-value=0.15 Score=32.39 Aligned_cols=26 Identities=8% Similarity=-0.088 Sum_probs=22.6
Q ss_pred CCcceeEeeecCCCCCchhhhhhhcc
Q 043011 107 HITSSVPVSLVASELNIPGLHSCFMT 132 (133)
Q Consensus 107 ~~~~~l~v~nl~~~~~~~~l~~~f~~ 132 (133)
....+|+|+|||..++..+|+++|..
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~ 38 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSG 38 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh
Confidence 34467999999999999999999964
No 309
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=91.33 E-value=0.15 Score=34.32 Aligned_cols=26 Identities=8% Similarity=-0.093 Sum_probs=22.8
Q ss_pred CCcceeEeeecCCCCCchhhhhhhcc
Q 043011 107 HITSSVPVSLVASELNIPGLHSCFMT 132 (133)
Q Consensus 107 ~~~~~l~v~nl~~~~~~~~l~~~f~~ 132 (133)
....+|+|+|||..++..+|+++|..
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~ 65 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSG 65 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhc
Confidence 44567999999999999999999964
No 310
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=91.30 E-value=0.15 Score=32.73 Aligned_cols=25 Identities=12% Similarity=0.081 Sum_probs=22.1
Q ss_pred CcceeEeeecCCCCCchhhhhhhcc
Q 043011 108 ITSSVPVSLVASELNIPGLHSCFMT 132 (133)
Q Consensus 108 ~~~~l~v~nl~~~~~~~~l~~~f~~ 132 (133)
...+|+|+|||..++..+|+++|..
T Consensus 24 ~~~~l~V~nLp~~~t~~~l~~~f~~ 48 (115)
T 2cpx_A 24 PNKVLYLKNLSPRVTERDLVSLFAR 48 (115)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHTHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHH
Confidence 4467999999999999999999963
No 311
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=91.30 E-value=0.16 Score=32.49 Aligned_cols=26 Identities=8% Similarity=0.002 Sum_probs=22.6
Q ss_pred CCcceeEeeecCCCCCchhhhhhhcc
Q 043011 107 HITSSVPVSLVASELNIPGLHSCFMT 132 (133)
Q Consensus 107 ~~~~~l~v~nl~~~~~~~~l~~~f~~ 132 (133)
....+|+|+|||.+++..+|+++|..
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~ 38 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFFSP 38 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHH
Confidence 34467999999999999999999964
No 312
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=91.29 E-value=0.13 Score=32.74 Aligned_cols=27 Identities=11% Similarity=-0.015 Sum_probs=23.2
Q ss_pred CCCcceeEeeecCCCCCchhhhhhhcc
Q 043011 106 RHITSSVPVSLVASELNIPGLHSCFMT 132 (133)
Q Consensus 106 ~~~~~~l~v~nl~~~~~~~~l~~~f~~ 132 (133)
.....+|+|+|||..++..+|+++|..
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~~~F~~ 49 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQEKFCD 49 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHHHHHGG
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh
Confidence 344567999999999999999999964
No 313
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=91.23 E-value=0.12 Score=33.42 Aligned_cols=28 Identities=11% Similarity=0.057 Sum_probs=23.5
Q ss_pred CCCCcceeEeeecCCCCCchhhhhhhcc
Q 043011 105 TRHITSSVPVSLVASELNIPGLHSCFMT 132 (133)
Q Consensus 105 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~ 132 (133)
......+|+|+||+..++..+|+++|..
T Consensus 27 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~ 54 (108)
T 2jvo_A 27 GELSNTRLFVRPFPLDVQESELNEIFGP 54 (108)
T ss_dssp -CCSCSEEEECSSCTTCCHHHHHHHHTT
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHh
Confidence 3445577999999999999999999964
No 314
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=91.10 E-value=0.14 Score=32.74 Aligned_cols=26 Identities=19% Similarity=0.088 Sum_probs=22.6
Q ss_pred CCCcceeEeeecCCCCCchhhhhhhc
Q 043011 106 RHITSSVPVSLVASELNIPGLHSCFM 131 (133)
Q Consensus 106 ~~~~~~l~v~nl~~~~~~~~l~~~f~ 131 (133)
.....+|+|+||+..++..+|+++|.
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~ 47 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFS 47 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHH
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHH
Confidence 34456799999999999999999996
No 315
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=91.06 E-value=0.11 Score=31.60 Aligned_cols=24 Identities=21% Similarity=0.138 Sum_probs=21.7
Q ss_pred cceeEeeecCCCCCchhhhhhhcc
Q 043011 109 TSSVPVSLVASELNIPGLHSCFMT 132 (133)
Q Consensus 109 ~~~l~v~nl~~~~~~~~l~~~f~~ 132 (133)
..+|+|+|||..++..+|+++|..
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~ 29 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHG 29 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGG
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHh
Confidence 467999999999999999999964
No 316
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=90.86 E-value=0.15 Score=33.39 Aligned_cols=27 Identities=19% Similarity=0.036 Sum_probs=23.1
Q ss_pred CCCcceeEeeecCCCCCchhhhhhhcc
Q 043011 106 RHITSSVPVSLVASELNIPGLHSCFMT 132 (133)
Q Consensus 106 ~~~~~~l~v~nl~~~~~~~~l~~~f~~ 132 (133)
.....+|+|+||+..++..+|+++|..
T Consensus 19 ~~~~~~l~V~nlp~~~t~~~l~~~F~~ 45 (126)
T 3ex7_B 19 SVEGWILFVTGVHEEATEEDIHDKFAE 45 (126)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHHHHHT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh
Confidence 344567999999999999999999964
No 317
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=90.86 E-value=0.12 Score=31.39 Aligned_cols=24 Identities=17% Similarity=0.231 Sum_probs=21.5
Q ss_pred cceeEeeecCCCCCchhhhhhhcc
Q 043011 109 TSSVPVSLVASELNIPGLHSCFMT 132 (133)
Q Consensus 109 ~~~l~v~nl~~~~~~~~l~~~f~~ 132 (133)
..+|+|+|||..++..+|+++|..
T Consensus 6 ~~~l~v~nlp~~~t~~~l~~~F~~ 29 (87)
T 3bs9_A 6 HFHVFVGDLSPEITTAAIAAAFAP 29 (87)
T ss_dssp CEEEEEESCCTTCCHHHHHHHHGG
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHh
Confidence 357999999999999999999964
No 318
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=90.76 E-value=0.12 Score=33.35 Aligned_cols=28 Identities=11% Similarity=0.061 Sum_probs=21.4
Q ss_pred CCCCcceeEeeecCCCCCchhhhhhhcc
Q 043011 105 TRHITSSVPVSLVASELNIPGLHSCFMT 132 (133)
Q Consensus 105 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~ 132 (133)
......+|+|+||+..++..+|+++|..
T Consensus 21 ~~~~~~~lfV~nLp~~~te~~L~~~F~~ 48 (109)
T 2rs2_A 21 MGSSGCKMFIGGLSWQTTQEGLREYFGQ 48 (109)
T ss_dssp -----CCEEEESCCTTCCHHHHHHHHTT
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHc
Confidence 4445577999999999999999999964
No 319
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=90.71 E-value=0.13 Score=32.13 Aligned_cols=25 Identities=12% Similarity=0.101 Sum_probs=22.0
Q ss_pred CcceeEeeecCC-CCCchhhhhhhcc
Q 043011 108 ITSSVPVSLVAS-ELNIPGLHSCFMT 132 (133)
Q Consensus 108 ~~~~l~v~nl~~-~~~~~~l~~~f~~ 132 (133)
...+|+|+|||. .++..+|+++|..
T Consensus 9 ~~~~l~V~nlp~~~~t~~~l~~~F~~ 34 (96)
T 2kvi_A 9 PKSRLFIGNLPLKNVSKEDLFRIFSP 34 (96)
T ss_dssp CCEEEEEESSTTSCCCHHHHHHHHTT
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHh
Confidence 446799999998 9999999999964
No 320
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=90.61 E-value=0.14 Score=33.31 Aligned_cols=23 Identities=17% Similarity=0.066 Sum_probs=21.1
Q ss_pred ceeEeeecCCCCCchhhhhhhcc
Q 043011 110 SSVPVSLVASELNIPGLHSCFMT 132 (133)
Q Consensus 110 ~~l~v~nl~~~~~~~~l~~~f~~ 132 (133)
.+|+|+||+..++..+|+++|..
T Consensus 17 ~~l~V~nLp~~~t~~~l~~~F~~ 39 (115)
T 3beg_B 17 NRVVVSGLPPSGSWQDLKDHMRE 39 (115)
T ss_dssp CCEEEEECCSSCCTTHHHHHHGG
T ss_pred cEEEEeCCCCCCCHHHHHHHHHh
Confidence 46999999999999999999974
No 321
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=90.59 E-value=0.24 Score=32.42 Aligned_cols=25 Identities=12% Similarity=-0.051 Sum_probs=22.1
Q ss_pred CcceeEeeecCCCCCchhhhhhhcc
Q 043011 108 ITSSVPVSLVASELNIPGLHSCFMT 132 (133)
Q Consensus 108 ~~~~l~v~nl~~~~~~~~l~~~f~~ 132 (133)
...+|+|+|||..++..+|+++|..
T Consensus 24 ~~~~l~V~nLp~~~te~~l~~~F~~ 48 (124)
T 1wel_A 24 AGFCVYLKGLPFEAENKHVIDFFKK 48 (124)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHSCS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHh
Confidence 4467999999999999999999964
No 322
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=90.40 E-value=0.22 Score=33.11 Aligned_cols=27 Identities=11% Similarity=0.213 Sum_probs=23.2
Q ss_pred CCCcceeEeeecCCCCCchhhhhhhcc
Q 043011 106 RHITSSVPVSLVASELNIPGLHSCFMT 132 (133)
Q Consensus 106 ~~~~~~l~v~nl~~~~~~~~l~~~f~~ 132 (133)
.....+|+|+||+..++..+|+++|..
T Consensus 39 ~~~~~~l~V~nLp~~~~~~~l~~~F~~ 65 (139)
T 1u6f_A 39 PDVLRNLMVNYIPTTVDEVQLRQLFER 65 (139)
T ss_dssp TTTTSEEEEESCSTTCCHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh
Confidence 445577999999999999999999963
No 323
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=90.35 E-value=0.19 Score=33.51 Aligned_cols=28 Identities=11% Similarity=-0.012 Sum_probs=23.6
Q ss_pred CCCCcceeEeeecCCCCCchhhhhhhcc
Q 043011 105 TRHITSSVPVSLVASELNIPGLHSCFMT 132 (133)
Q Consensus 105 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~ 132 (133)
......+|+|+|||..++..+|+++|..
T Consensus 42 ~~~~~~~l~V~nLp~~~te~~L~~~F~~ 69 (129)
T 2kxn_B 42 NPDPNCCLGVFGLSLYTTERDLREVFSK 69 (129)
T ss_dssp CCCCSSCBCEETCTTSCCHHHHHHHHTT
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHh
Confidence 3445567999999999999999999964
No 324
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=90.33 E-value=0.2 Score=32.74 Aligned_cols=25 Identities=8% Similarity=-0.011 Sum_probs=22.0
Q ss_pred CcceeEeeecCCCCCchhhhhhhcc
Q 043011 108 ITSSVPVSLVASELNIPGLHSCFMT 132 (133)
Q Consensus 108 ~~~~l~v~nl~~~~~~~~l~~~f~~ 132 (133)
...+|+|+|||.+++..+|+++|..
T Consensus 16 ~~~~l~V~nLp~~~te~~l~~~F~~ 40 (118)
T 2db1_A 16 EGYVVKLRGLPWSCSIEDVQNFLSD 40 (118)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHTTT
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHH
Confidence 4467999999999999999999964
No 325
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=90.31 E-value=0.15 Score=31.57 Aligned_cols=24 Identities=13% Similarity=0.199 Sum_probs=21.6
Q ss_pred cceeEeeecCCCCCchhhhhhhcc
Q 043011 109 TSSVPVSLVASELNIPGLHSCFMT 132 (133)
Q Consensus 109 ~~~l~v~nl~~~~~~~~l~~~f~~ 132 (133)
..+|+|+|||..++..+|+++|..
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~ 38 (95)
T 2ek1_A 15 PTVIKVQNMPFTVSIDEILDFFYG 38 (95)
T ss_dssp CEEEEEECCCTTCCHHHHHHHTTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHh
Confidence 367999999999999999999964
No 326
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=90.07 E-value=0.2 Score=34.04 Aligned_cols=26 Identities=8% Similarity=-0.017 Sum_probs=22.9
Q ss_pred CCcceeEeeecCCCCCchhhhhhhcc
Q 043011 107 HITSSVPVSLVASELNIPGLHSCFMT 132 (133)
Q Consensus 107 ~~~~~l~v~nl~~~~~~~~l~~~f~~ 132 (133)
....+|+|+|||..++..+|+++|..
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~ 62 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSK 62 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGG
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh
Confidence 34567999999999999999999974
No 327
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=89.95 E-value=0.16 Score=32.67 Aligned_cols=25 Identities=16% Similarity=0.141 Sum_probs=22.2
Q ss_pred CcceeEeeecCCCCCchhhhhhhcc
Q 043011 108 ITSSVPVSLVASELNIPGLHSCFMT 132 (133)
Q Consensus 108 ~~~~l~v~nl~~~~~~~~l~~~f~~ 132 (133)
...+|+|+||+..++..+|+++|..
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~ 48 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSA 48 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHh
Confidence 3467999999999999999999974
No 328
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=89.80 E-value=0.24 Score=31.53 Aligned_cols=25 Identities=24% Similarity=0.125 Sum_probs=20.8
Q ss_pred CcceeEeeecCCCC------Cchhhhhhhcc
Q 043011 108 ITSSVPVSLVASEL------NIPGLHSCFMT 132 (133)
Q Consensus 108 ~~~~l~v~nl~~~~------~~~~l~~~f~~ 132 (133)
...+|+|+|||..+ +..+|+++|..
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~ 44 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSK 44 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGG
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhc
Confidence 34679999999998 56889999964
No 329
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=89.59 E-value=0.22 Score=33.34 Aligned_cols=25 Identities=16% Similarity=0.098 Sum_probs=22.0
Q ss_pred CcceeEeeecCCCCCchhhhhhhcc
Q 043011 108 ITSSVPVSLVASELNIPGLHSCFMT 132 (133)
Q Consensus 108 ~~~~l~v~nl~~~~~~~~l~~~f~~ 132 (133)
...+|+|+|||..++..+|+.+|..
T Consensus 44 ~~~~l~V~nLp~~~te~~L~~~F~~ 68 (143)
T 3egn_A 44 PNCRIYVKNLAKHVQEKDLKYIFGR 68 (143)
T ss_dssp CCSEEEEEEECTTCCHHHHHHHHGG
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHH
Confidence 3457999999999999999999964
No 330
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=89.52 E-value=0.28 Score=31.48 Aligned_cols=27 Identities=19% Similarity=0.052 Sum_probs=22.8
Q ss_pred CCCcceeEeeecCCCCCchhhh---hhhcc
Q 043011 106 RHITSSVPVSLVASELNIPGLH---SCFMT 132 (133)
Q Consensus 106 ~~~~~~l~v~nl~~~~~~~~l~---~~f~~ 132 (133)
.....+|+|+|||..++..+|+ ++|..
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~ 41 (111)
T 2cpi_A 12 VVQKNLVFVVGLSQRLADPEVLKRPEYFGK 41 (111)
T ss_dssp CCCSSCEEEEEECTTTCCHHHHHSTTTTTT
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHhhc
Confidence 3445679999999999999999 99964
No 331
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=89.36 E-value=0.23 Score=31.19 Aligned_cols=27 Identities=15% Similarity=0.228 Sum_probs=23.0
Q ss_pred CCCcceeEeeecCC-CCCchhhhhhhcc
Q 043011 106 RHITSSVPVSLVAS-ELNIPGLHSCFMT 132 (133)
Q Consensus 106 ~~~~~~l~v~nl~~-~~~~~~l~~~f~~ 132 (133)
.....+|+|+||+. .++..+|+++|..
T Consensus 19 ~~~~~~l~V~nLp~~~~t~~~L~~~F~~ 46 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVSKEDLFRIFSP 46 (97)
T ss_dssp CCTTCEEEEESCCSSCCCHHHHHHHHGG
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHh
Confidence 33556799999998 9999999999964
No 332
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=89.32 E-value=0.29 Score=32.28 Aligned_cols=27 Identities=22% Similarity=0.261 Sum_probs=23.3
Q ss_pred CCCcceeEeeecCCCCCchhhhhhhcc
Q 043011 106 RHITSSVPVSLVASELNIPGLHSCFMT 132 (133)
Q Consensus 106 ~~~~~~l~v~nl~~~~~~~~l~~~f~~ 132 (133)
.....+|+|+|||..++..+|+++|..
T Consensus 60 ~~~~~~l~v~nlp~~~~~~~l~~~f~~ 86 (140)
T 2ku7_A 60 ATTKRVLYVGGLAEEVDDKVLHAAFIP 86 (140)
T ss_dssp CSSCCEEEEECCCTTCCHHHHHHHHGG
T ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHh
Confidence 445577999999999999999999964
No 333
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=89.19 E-value=0.2 Score=32.29 Aligned_cols=27 Identities=7% Similarity=0.054 Sum_probs=23.0
Q ss_pred CCCcceeEeeecCCCCCchhhhhhhcc
Q 043011 106 RHITSSVPVSLVASELNIPGLHSCFMT 132 (133)
Q Consensus 106 ~~~~~~l~v~nl~~~~~~~~l~~~f~~ 132 (133)
.....+|+|+||+..++..+|+++|..
T Consensus 24 ~~~~~~l~V~nLp~~~te~~l~~~F~~ 50 (116)
T 1x4b_A 24 KEQFRKLFIGGLSFETTEESLRNYYEQ 50 (116)
T ss_dssp HHHHTEEEEECCTTCCCHHHHHHHHTS
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHh
Confidence 334467999999999999999999964
No 334
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=89.04 E-value=0.17 Score=35.04 Aligned_cols=24 Identities=13% Similarity=-0.072 Sum_probs=21.2
Q ss_pred cceeEeeecCCCCCchhhhhhhcc
Q 043011 109 TSSVPVSLVASELNIPGLHSCFMT 132 (133)
Q Consensus 109 ~~~l~v~nl~~~~~~~~l~~~f~~ 132 (133)
..+|+|+||+.+++..+|+++|..
T Consensus 55 ~~~lfVgnLp~~~te~~L~~~F~~ 78 (156)
T 3n9u_C 55 RAAVYVGSFSWWTTDQQLIQVIRS 78 (156)
T ss_dssp -CEEEEECCCTTCCHHHHHHHHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHH
Confidence 357999999999999999999964
No 335
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=88.35 E-value=0.25 Score=32.22 Aligned_cols=25 Identities=12% Similarity=-0.079 Sum_probs=22.2
Q ss_pred CcceeEeeecCCCCCchhhhhhhcc
Q 043011 108 ITSSVPVSLVASELNIPGLHSCFMT 132 (133)
Q Consensus 108 ~~~~l~v~nl~~~~~~~~l~~~f~~ 132 (133)
...+|+|+|||..++..+|+++|..
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~ 39 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHG 39 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhcc
Confidence 3467999999999999999999974
No 336
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=87.94 E-value=0.36 Score=30.05 Aligned_cols=24 Identities=25% Similarity=0.253 Sum_probs=21.1
Q ss_pred CcceeEeeecCCCCCchhhh----hhhc
Q 043011 108 ITSSVPVSLVASELNIPGLH----SCFM 131 (133)
Q Consensus 108 ~~~~l~v~nl~~~~~~~~l~----~~f~ 131 (133)
...+|+|+|||..++..+|+ ++|.
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~ 35 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFA 35 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhcc
Confidence 34579999999999999999 8886
No 337
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=87.42 E-value=0.31 Score=32.50 Aligned_cols=24 Identities=8% Similarity=-0.043 Sum_probs=21.6
Q ss_pred cceeEeeecCCCCCchhhhhhhcc
Q 043011 109 TSSVPVSLVASELNIPGLHSCFMT 132 (133)
Q Consensus 109 ~~~l~v~nl~~~~~~~~l~~~f~~ 132 (133)
..+|+|+|||.+++..+|+++|..
T Consensus 23 ~~~v~V~nLp~~~te~dl~~~F~~ 46 (123)
T 2dha_A 23 QVIVRMRGLPFTATAEEVVAFFGQ 46 (123)
T ss_dssp CCEEEECSCCTTCCHHHHHHHHHT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHh
Confidence 357999999999999999999964
No 338
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=85.30 E-value=0.38 Score=35.30 Aligned_cols=24 Identities=4% Similarity=-0.097 Sum_probs=21.2
Q ss_pred cceeEeeecCCCCCchhhhhhhcc
Q 043011 109 TSSVPVSLVASELNIPGLHSCFMT 132 (133)
Q Consensus 109 ~~~l~v~nl~~~~~~~~l~~~f~~ 132 (133)
..+|+|+||+..++..+|+++|..
T Consensus 68 ~~~lfVgnL~~~~te~~L~~~F~~ 91 (229)
T 3q2s_C 68 RIALYIGNLTWWTTDEDLTEAVHS 91 (229)
T ss_dssp -CEEEEESCCTTCCHHHHHHHHHT
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHH
Confidence 456999999999999999999964
No 339
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=83.06 E-value=0.79 Score=32.17 Aligned_cols=24 Identities=13% Similarity=0.117 Sum_probs=21.5
Q ss_pred cceeEeeecCCCCCchhhhhhhcc
Q 043011 109 TSSVPVSLVASELNIPGLHSCFMT 132 (133)
Q Consensus 109 ~~~l~v~nl~~~~~~~~l~~~f~~ 132 (133)
..+|+|+||+..++..+|+++|..
T Consensus 88 ~~~l~V~nLp~~~te~~L~~~F~~ 111 (177)
T 2f3j_A 88 GAKLLVSNLDFGVSDADIQELFAE 111 (177)
T ss_dssp CEEEEEECCCSCCCHHHHHHHHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHh
Confidence 457999999999999999999963
No 340
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=82.69 E-value=0.62 Score=30.82 Aligned_cols=24 Identities=17% Similarity=0.097 Sum_probs=21.0
Q ss_pred CcceeEe--eecCCCCCchhhhhhhc
Q 043011 108 ITSSVPV--SLVASELNIPGLHSCFM 131 (133)
Q Consensus 108 ~~~~l~v--~nl~~~~~~~~l~~~f~ 131 (133)
...+|+| +||+..++..+|+++|.
T Consensus 24 pt~~L~V~Ng~L~~~~te~~L~~~F~ 49 (114)
T 2cq2_A 24 ATQSLVVANGGLGNGVSRNQLLPVLE 49 (114)
T ss_dssp CCSEEEEETCTGGGTCCHHHHHHHHH
T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHH
Confidence 4567999 77999999999999995
No 341
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=81.93 E-value=0.64 Score=31.49 Aligned_cols=22 Identities=18% Similarity=0.212 Sum_probs=20.1
Q ss_pred eeEeeecCCCCCchhhhhhhcc
Q 043011 111 SVPVSLVASELNIPGLHSCFMT 132 (133)
Q Consensus 111 ~l~v~nl~~~~~~~~l~~~f~~ 132 (133)
.|+|+||+..++..+|++||..
T Consensus 30 ~I~V~NL~~~vte~~L~~lFs~ 51 (130)
T 3zzy_A 30 RIIVENLFYPVTLDVLHQIFSK 51 (130)
T ss_dssp EEEEESCCSCCCHHHHHHHHTT
T ss_pred EEEECCCCCCCCHHHHHHHHhC
Confidence 4889999999999999999964
No 342
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=80.63 E-value=1.5 Score=27.09 Aligned_cols=26 Identities=12% Similarity=0.050 Sum_probs=20.9
Q ss_pred CCCCcceeEeeecCCCCCchhhhhhhcc
Q 043011 105 TRHITSSVPVSLVASELNIPGLHSCFMT 132 (133)
Q Consensus 105 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~ 132 (133)
......+|+|+|+ .++..+|+++|..
T Consensus 11 ~~~~~~~l~V~n~--~~t~~~l~~~F~~ 36 (97)
T 1x5p_A 11 APRKGNTLYVYGE--DMTPTLLRGAFSP 36 (97)
T ss_dssp CCCCCSEEEEECS--SCCHHHHHHHHTT
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHhh
Confidence 3345567999996 8999999999964
No 343
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=80.26 E-value=1.3 Score=29.52 Aligned_cols=24 Identities=13% Similarity=0.084 Sum_probs=19.6
Q ss_pred CcceeEeeecCCCCCchhhh----hhhc
Q 043011 108 ITSSVPVSLVASELNIPGLH----SCFM 131 (133)
Q Consensus 108 ~~~~l~v~nl~~~~~~~~l~----~~f~ 131 (133)
...+|+|+||+..++..+|+ ++|.
T Consensus 28 p~~~LfV~nL~~~~~e~~L~~~L~~~F~ 55 (127)
T 2a3j_A 28 PSQVVLITNINPEVPKEKLQALLYALAS 55 (127)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhc
Confidence 34679999999999999876 5774
No 344
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=78.91 E-value=0.92 Score=30.30 Aligned_cols=21 Identities=5% Similarity=0.001 Sum_probs=19.4
Q ss_pred eEeeecCCCCCchhhhhhhcc
Q 043011 112 VPVSLVASELNIPGLHSCFMT 132 (133)
Q Consensus 112 l~v~nl~~~~~~~~l~~~f~~ 132 (133)
|+|+||+..++..+|+++|..
T Consensus 28 l~V~NL~~~vt~~~L~~~Fs~ 48 (124)
T 2e5i_A 28 LSIQNPLYPITVDVLYTVCNP 48 (124)
T ss_dssp EEEESCCSCCCHHHHHHHHTT
T ss_pred EEEcCcCCCCCHHHHHHHHHh
Confidence 679999999999999999974
No 345
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=78.05 E-value=0.89 Score=32.06 Aligned_cols=22 Identities=18% Similarity=0.179 Sum_probs=20.1
Q ss_pred ceeEeeecCCCCCchhhhhhhc
Q 043011 110 SSVPVSLVASELNIPGLHSCFM 131 (133)
Q Consensus 110 ~~l~v~nl~~~~~~~~l~~~f~ 131 (133)
-+|+|+||+..++..+|+++|.
T Consensus 47 l~l~VgNL~~~vted~L~~~Fs 68 (164)
T 1sjr_A 47 LRIIVENLFYPVTLDVLHQIFS 68 (164)
T ss_dssp EEEEECSCCSCCCHHHHHHHHH
T ss_pred EEEEEeCcCCCCCHHHHHHHHH
Confidence 4489999999999999999996
No 346
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=75.75 E-value=1.7 Score=28.10 Aligned_cols=21 Identities=10% Similarity=-0.088 Sum_probs=17.8
Q ss_pred eEeeecCCCCCchh----hhhhhcc
Q 043011 112 VPVSLVASELNIPG----LHSCFMT 132 (133)
Q Consensus 112 l~v~nl~~~~~~~~----l~~~f~~ 132 (133)
|+|+|||..++... |++||..
T Consensus 12 lYV~NL~~~~~~~~lk~~L~~lF~~ 36 (96)
T 2diu_A 12 LYVYNLPANKDGKSVSNRLRRLSDN 36 (96)
T ss_dssp EEEESCCTTSCHHHHHHHHHHHHHT
T ss_pred EEEeCCCCcCCHHHHHHHHHHHHHH
Confidence 89999999999887 5678853
No 347
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=75.20 E-value=3.6 Score=26.84 Aligned_cols=34 Identities=12% Similarity=0.288 Sum_probs=29.3
Q ss_pred CeeEEEEcCCCCCeEEEEECCHHHHHHHHHHhcC
Q 043011 48 DVKGIYAADDSGARVIVSYFDEGSAQAAFNSLHS 81 (133)
Q Consensus 48 ~V~~v~~~~~~kg~afV~f~~~~~A~~A~~~l~g 81 (133)
.|.++.....-+||-||+=.+..+...|++.+.+
T Consensus 40 ~I~Si~~~~~lkGyIyVEA~~~~~V~~ai~gi~~ 73 (106)
T 3h7h_B 40 QIKSVVAPEHVKGYIYVEAYKQTHVKQAIEGVGN 73 (106)
T ss_dssp CCCEEEECTTCCSEEEEEESSHHHHHHHHTTCGG
T ss_pred ceEEEEecCCCceEEEEEeCCHHHHHHHHhcccc
Confidence 4899999878899999999999999888876654
No 348
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=72.41 E-value=14 Score=23.09 Aligned_cols=54 Identities=15% Similarity=0.084 Sum_probs=38.4
Q ss_pred eEEEeccCCCCCCCHHHHHHHhhc-CC-CeeEEEEcCCCCC--eEEEEECCHHHHHHHHH
Q 043011 22 NLFVANCGPAVGVSYEAIGSVFSA-FG-DVKGIYAADDSGA--RVIVSYFDEGSAQAAFN 77 (133)
Q Consensus 22 ~L~V~Nl~~~~~vte~~L~~~F~~-fG-~V~~v~~~~~~kg--~afV~f~~~~~A~~A~~ 77 (133)
+-|+-.++.. .+..++++..++ || +|.+|......+| -|||+...-.+|...-.
T Consensus 24 n~~~F~Vd~~--AnK~qIK~AVe~lf~VkV~~VNTl~~~~~~KKA~V~L~~~~~a~dva~ 81 (86)
T 3j21_T 24 NKLTFIVDRR--ATKQDIKRAVEEIFNVKVEKVNTLITPRGEKKAYVKLKPEYSASEVAA 81 (86)
T ss_dssp CEEEEEECTT--CCHHHHHHHHHHHTTCCEEEEEEEECTTSCEEEEEEECTTSCHHHHHH
T ss_pred CEEEEEEcCC--CCHHHHHHHHHHHcCCCceEEEEeEcCCCceEEEEEcCCCCcHHHHHH
Confidence 4566678888 999999988876 56 5777765433344 49999988777765433
No 349
>2exu_A Transcription initiation protein SPT4/SPT5; helixs surrounding beta sheet; 2.23A {Saccharomyces cerevisiae}
Probab=71.27 E-value=12 Score=27.08 Aligned_cols=32 Identities=13% Similarity=0.235 Sum_probs=26.4
Q ss_pred eeEEEEcCCCCCeEEEEECCHHHHHHHHHHhc
Q 043011 49 VKGIYAADDSGARVIVSYFDEGSAQAAFNSLH 80 (133)
Q Consensus 49 V~~v~~~~~~kg~afV~f~~~~~A~~A~~~l~ 80 (133)
|.+|.....-+||-||+=.+..+...|++.+.
T Consensus 139 I~Si~~~d~lkGYIyVEA~~~~~V~~ai~Gi~ 170 (200)
T 2exu_A 139 ILSIFQRDNYTGRIYIEAPKQSVIEKFCNGVP 170 (200)
T ss_dssp CCEEECCTTSTTEEEEECSCHHHHHHHHTTCT
T ss_pred EEEEEecCCCcEEEEEEECCHHHHHHHHhhhh
Confidence 88998866679999999999988887776544
No 350
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=70.08 E-value=0.64 Score=34.73 Aligned_cols=46 Identities=13% Similarity=0.008 Sum_probs=27.6
Q ss_pred CCCeeEEEEeeecCC-CCCCCCCcceeEeeecCCCC---------Cchhhhhhhcc
Q 043011 87 LANRFLHISYSVLED-SPATRHITSSVPVSLVASEL---------NIPGLHSCFMT 132 (133)
Q Consensus 87 l~gr~l~V~~a~~~~-~~~~~~~~~~l~v~nl~~~~---------~~~~l~~~f~~ 132 (133)
..||..+.++..... .........+|+|+||+..+ +..+|+.+|..
T Consensus 111 ~fGr~k~~~~~d~~~g~gs~~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~ 166 (240)
T 3u1l_A 111 CFGREKFADYREDMGGIGSFRKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSR 166 (240)
T ss_dssp TTSSBCGGGTC---------CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHT
T ss_pred cccchhcccchhcccCcCccccCCceeecCCCChhhhcccccccCcHHHHHHHHHc
Confidence 557764443332222 11123345789999999998 58999999964
No 351
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=67.37 E-value=19 Score=22.43 Aligned_cols=34 Identities=21% Similarity=0.285 Sum_probs=27.0
Q ss_pred CeeEEEEcCCCCCeEEEEECCHHHHHHHHHHhcC
Q 043011 48 DVKGIYAADDSGARVIVSYFDEGSAQAAFNSLHS 81 (133)
Q Consensus 48 ~V~~v~~~~~~kg~afV~f~~~~~A~~A~~~l~g 81 (133)
+|.++.++..-.||.||++...++...+++.+.|
T Consensus 39 ~i~~v~vP~~fPGYVfVe~~~~~~~~~~I~~t~g 72 (92)
T 3lpe_A 39 DVYSILASESLKGYVLVEAETKGDVEELIKGMPR 72 (92)
T ss_dssp CEEEEEECTTSTTEEEEEESSHHHHHHHHTTCTT
T ss_pred cEEEEEEecccCCEEEEEEecchhHHHHHHCCCC
Confidence 3778888767899999999988887777765544
No 352
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=66.58 E-value=1.4 Score=30.43 Aligned_cols=28 Identities=11% Similarity=-0.092 Sum_probs=19.7
Q ss_pred HHHHHHhhcCCCeeEEEEcCCCCCeEEEEEC
Q 043011 37 EAIGSVFSAFGDVKGIYAADDSGARVIVSYF 67 (133)
Q Consensus 37 ~~L~~~F~~fG~V~~v~~~~~~kg~afV~f~ 67 (133)
+|+.++|...|.|+.... .|||+||+-.
T Consensus 2 ~~~~~l~~~~G~Vkwfn~---~kGfGFI~~~ 29 (148)
T 3ts2_A 2 ADEPQLLHGAGICKWFNV---RMGFGFLSMT 29 (148)
T ss_dssp ----CCEEEEEEEEEEET---TTTEEEEEEE
T ss_pred CcccccccceeEEEEEEC---CCCeeEEeeC
Confidence 566788888888876654 7999999976
No 353
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=63.00 E-value=4.9 Score=26.12 Aligned_cols=24 Identities=13% Similarity=0.058 Sum_probs=19.8
Q ss_pred CCcceeEeeecCCCCCchhhhhhhcc
Q 043011 107 HITSSVPVSLVASELNIPGLHSCFMT 132 (133)
Q Consensus 107 ~~~~~l~v~nl~~~~~~~~l~~~f~~ 132 (133)
....+|+|+|+ .++..+|+++|..
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~ 60 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSP 60 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHST
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHc
Confidence 34567999996 6999999999964
No 354
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=62.61 E-value=4.7 Score=24.17 Aligned_cols=20 Identities=20% Similarity=0.258 Sum_probs=14.6
Q ss_pred CCeeEEEEcCCCCCeEEEEECCH
Q 043011 47 GDVKGIYAADDSGARVIVSYFDE 69 (133)
Q Consensus 47 G~V~~v~~~~~~kg~afV~f~~~ 69 (133)
|.|.+|. +.+|.|+|.|+|-
T Consensus 32 gtI~~V~---~~~gtC~V~F~D~ 51 (66)
T 2eqj_A 32 GTIKKIN---ILKQSCFIIFEDS 51 (66)
T ss_dssp EEEEEEE---TTTTEEEEEETTT
T ss_pred eEEEEEc---cCCcEEEEEEccC
Confidence 5566664 4689999999863
No 355
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=62.28 E-value=4.9 Score=24.17 Aligned_cols=20 Identities=20% Similarity=0.429 Sum_probs=14.8
Q ss_pred CCeeEEEEcCCCCCeEEEEECCH
Q 043011 47 GDVKGIYAADDSGARVIVSYFDE 69 (133)
Q Consensus 47 G~V~~v~~~~~~kg~afV~f~~~ 69 (133)
|+|..|. +.++.|+|.|+|-
T Consensus 28 GtV~kV~---~~~~~ClV~FeD~ 47 (68)
T 2e5p_A 28 GTIKKVD---SAREVCLVQFEDD 47 (68)
T ss_dssp EEEEEEE---TTTTEEEEEETTT
T ss_pred eEEEEEe---cCCcEEEEEEccC
Confidence 5666664 3688999999763
No 356
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=58.17 E-value=16 Score=22.77 Aligned_cols=51 Identities=12% Similarity=0.211 Sum_probs=36.0
Q ss_pred eEEEeccCCCCCCCHHHHHHHhhc-CC-CeeEEEEcCCCCC--eEEEEECCHHHHHH
Q 043011 22 NLFVANCGPAVGVSYEAIGSVFSA-FG-DVKGIYAADDSGA--RVIVSYFDEGSAQA 74 (133)
Q Consensus 22 ~L~V~Nl~~~~~vte~~L~~~F~~-fG-~V~~v~~~~~~kg--~afV~f~~~~~A~~ 74 (133)
+-|+-.++.. .+..++++.+++ || +|.+|......+| -|+|+...-.+|..
T Consensus 23 n~~~F~V~~~--AnK~qIK~ave~lf~VkV~~VNT~~~~~~~KKA~VtL~~g~~aid 77 (85)
T 1vq8_S 23 NKLQFAVDDR--ASKGEVADAVEEQYDVTVEQVNTQNTMDGEKKAVVRLSEDDDAQE 77 (85)
T ss_dssp CEEEEEECTT--CCHHHHHHHHHHHHCCCEEEEEEEECTTSSEEEEEEECTTSCHHH
T ss_pred CEEEEEECCC--CCHHHHHHHHHHHhCCCceEEEeeecCCCceEEEEEECCCCcHHH
Confidence 4456678888 999999988866 46 5777765333344 49999977766544
No 357
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=57.05 E-value=6.6 Score=24.23 Aligned_cols=20 Identities=20% Similarity=0.439 Sum_probs=15.6
Q ss_pred CCeeEEEEcCCCCCeEEEEECCH
Q 043011 47 GDVKGIYAADDSGARVIVSYFDE 69 (133)
Q Consensus 47 G~V~~v~~~~~~kg~afV~f~~~ 69 (133)
|.|..|.. .++.|+|.|+|-
T Consensus 45 GTI~kV~~---~~e~ClV~F~D~ 64 (79)
T 2m0o_A 45 GTIKKVDS---AREVCLVQFEDD 64 (79)
T ss_dssp EEEEEEET---TTTEEEEEETTS
T ss_pred EEEEEecc---CCCEEEEEEcCC
Confidence 67777754 688999999874
No 358
>2e5q_A PHD finger protein 19; tudor domain, isoform B, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=51.56 E-value=3.7 Score=24.33 Aligned_cols=14 Identities=21% Similarity=0.387 Sum_probs=10.7
Q ss_pred CCCCCeEEEEECCH
Q 043011 56 DDSGARVIVSYFDE 69 (133)
Q Consensus 56 ~~~kg~afV~f~~~ 69 (133)
...++.|+|.|+|-
T Consensus 32 ~~~~~~ClV~FeD~ 45 (63)
T 2e5q_A 32 SSSKQSCLVTFEDN 45 (63)
T ss_dssp CSTTSEEEEEETTS
T ss_pred ecCCCEEEEEEccC
Confidence 34678999999864
No 359
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=49.04 E-value=11 Score=21.91 Aligned_cols=20 Identities=20% Similarity=0.429 Sum_probs=14.6
Q ss_pred CCeeEEEEcCCCCCeEEEEECCH
Q 043011 47 GDVKGIYAADDSGARVIVSYFDE 69 (133)
Q Consensus 47 G~V~~v~~~~~~kg~afV~f~~~ 69 (133)
|+|.+|. +.++.|+|.|+|-
T Consensus 22 GtI~~V~---~~~~~clV~F~D~ 41 (58)
T 4hcz_A 22 GTIKKVD---SAREVCLVQFEDD 41 (58)
T ss_dssp EEEEEEE---TTTTEEEEEETTS
T ss_pred EEEEEEe---cCCCEEEEEEcCC
Confidence 6676664 3677899999864
No 360
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=47.07 E-value=9.7 Score=25.26 Aligned_cols=23 Identities=17% Similarity=0.047 Sum_probs=20.2
Q ss_pred ceeEeeecCCC-CCchhhhhhhcc
Q 043011 110 SSVPVSLVASE-LNIPGLHSCFMT 132 (133)
Q Consensus 110 ~~l~v~nl~~~-~~~~~l~~~f~~ 132 (133)
--|+|+|++.. ++..+|+++|..
T Consensus 19 ~il~v~~l~~~~~sredLke~F~~ 42 (121)
T 1owx_A 19 CLLKFSGDLDDQTCREDLHILFSN 42 (121)
T ss_dssp CEEEEEESCCSSCCHHHHHHHTCS
T ss_pred eEEEEecCCCCcCCHHHHHHHHHh
Confidence 34899999999 999999999964
No 361
>3u5e_X 60S ribosomal protein L25; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_K 2ww9_K 3izc_X 3izs_X 2wwb_K 3o5h_W 3o58_W 3u5i_X 4b6a_X 1s1i_T 3jyw_T
Probab=43.66 E-value=54 Score=22.40 Aligned_cols=53 Identities=13% Similarity=0.097 Sum_probs=36.6
Q ss_pred eEEEeccCCCCCCCHHHHHHHhhc-CC-CeeEEEEcCCCCC--eEEEEECCHHHHHHHH
Q 043011 22 NLFVANCGPAVGVSYEAIGSVFSA-FG-DVKGIYAADDSGA--RVIVSYFDEGSAQAAF 76 (133)
Q Consensus 22 ~L~V~Nl~~~~~vte~~L~~~F~~-fG-~V~~v~~~~~~kg--~afV~f~~~~~A~~A~ 76 (133)
+-|+-.++.. .+..++++..++ || +|.+|.......| -|||....-.+|...-
T Consensus 80 N~~vF~Vd~~--AnK~qIK~AVEklf~VkV~kVNTl~~~~g~KKAyV~L~~~~daldvA 136 (142)
T 3u5e_X 80 NILVFQVSMK--ANKYQIKKAVKELYEVDVLKVNTLVRPNGTKKAYVRLTADYDALDIA 136 (142)
T ss_dssp CEEEEEECTT--CCHHHHHHHHHHHHSCCEEEEEEEECTTSCEEEEEEECTTCCHHHHH
T ss_pred CEEEEEEcCC--CCHHHHHHHHHHHhCCceeEEEeeEcCCCceEEEEEeCCCCcHHHHH
Confidence 4566668888 999999987766 46 5777765333334 4999998777766543
No 362
>2zkr_s 60S ribosomal protein L23A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=43.44 E-value=49 Score=22.97 Aligned_cols=53 Identities=13% Similarity=0.080 Sum_probs=36.3
Q ss_pred eEEEeccCCCCCCCHHHHHHHhhc-CC-CeeEEEEcCCCCC--eEEEEECCHHHHHHHH
Q 043011 22 NLFVANCGPAVGVSYEAIGSVFSA-FG-DVKGIYAADDSGA--RVIVSYFDEGSAQAAF 76 (133)
Q Consensus 22 ~L~V~Nl~~~~~vte~~L~~~F~~-fG-~V~~v~~~~~~kg--~afV~f~~~~~A~~A~ 76 (133)
+-|+-.++.. .+..|+++.+++ || +|.+|.......| -|||+...-.+|....
T Consensus 94 n~yvF~Vd~~--AnK~qIK~AVEklf~VkV~kVNTl~~~~~~KKAiVtL~~g~~aid~~ 150 (156)
T 2zkr_s 94 NTLVFIVDVK--ANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVA 150 (156)
T ss_dssp CEEEEEECTT--CCHHHHHHHHHHHHCCCEEEEEEEECSSSCEEEEEEECTTSCHHHHH
T ss_pred CcEEEEEECC--CCHHHHHHHHHHHhCCcceEEEeeEcCCCceEEEEEECCCCcHHHHH
Confidence 3456668888 999999988866 46 5777765332234 4999998776665443
No 363
>4a17_R RPL23A, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_R 4a1c_R 4a1e_R
Probab=40.19 E-value=69 Score=22.07 Aligned_cols=53 Identities=11% Similarity=0.169 Sum_probs=36.4
Q ss_pred eEEEeccCCCCCCCHHHHHHHhhc-CC-CeeEEEEcCCCCC--eEEEEECCHHHHHHHH
Q 043011 22 NLFVANCGPAVGVSYEAIGSVFSA-FG-DVKGIYAADDSGA--RVIVSYFDEGSAQAAF 76 (133)
Q Consensus 22 ~L~V~Nl~~~~~vte~~L~~~F~~-fG-~V~~v~~~~~~kg--~afV~f~~~~~A~~A~ 76 (133)
+-|+--++.. .+..++++.+++ || +|.+|.......| -|||....-.+|...-
T Consensus 88 N~~vF~Vd~k--AnK~qIK~AVEklf~VkV~kVNTl~~p~g~KKAyV~La~~~dAldvA 144 (150)
T 4a17_R 88 NTMVFYVHNR--STKPQIKSAFEKLYNVKVRSVNTLNTITGNKKAYIRLAADSDSLTLA 144 (150)
T ss_dssp SEEEEEECTT--CCHHHHHHHHHHHHCCCEEEEEEEECTTSCEEEEEEECSSSCHHHHH
T ss_pred CEEEEEEcCC--CCHHHHHHHHHHHhCCceeEEEeeEcCCCcEEEEEEcCCCCcHHHHH
Confidence 4556667888 999999887766 45 5777765333334 4999998776766543
No 364
>3p8b_B Transcription antitermination protein NUSG; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus} PDB: 3qqc_D
Probab=39.89 E-value=38 Score=22.79 Aligned_cols=34 Identities=15% Similarity=0.231 Sum_probs=27.0
Q ss_pred eeEEEEcCCCCCeEEEEECCHHHHHHHHHHhcCC
Q 043011 49 VKGIYAADDSGARVIVSYFDEGSAQAAFNSLHSR 82 (133)
Q Consensus 49 V~~v~~~~~~kg~afV~f~~~~~A~~A~~~l~g~ 82 (133)
|.++.++..-.||.||++...++...+++.+.|-
T Consensus 33 i~~v~vp~~fPGYVfVe~~~~~~~~~~v~~t~gV 66 (152)
T 3p8b_B 33 IYAILAPSRVKGYIFVEAPNKGVVDEAIRGIRHA 66 (152)
T ss_dssp CCEEEECTTCCSEEEEEESSHHHHHHHHTTCTTE
T ss_pred EEEEEeecCCCcEEEEEEEchHHHHHHHhCCCCE
Confidence 7788886567999999999888887777766543
No 365
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=36.22 E-value=28 Score=24.60 Aligned_cols=48 Identities=15% Similarity=0.127 Sum_probs=32.4
Q ss_pred eEEEeccCCC-------CCCCHHHHHHHh--hcCCCeeEEEE--cCCCCCeEEEEECCH
Q 043011 22 NLFVANCGPA-------VGVSYEAIGSVF--SAFGDVKGIYA--ADDSGARVIVSYFDE 69 (133)
Q Consensus 22 ~L~V~Nl~~~-------~~vte~~L~~~F--~~fG~V~~v~~--~~~~kg~afV~f~~~ 69 (133)
...|-|++.. .|.+..+|++.| +.|.+++-..+ ...+.|+|.|.|.+-
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~kv~~l~~~~Gh~g~aIv~F~~d 72 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTRVRPLWNYLGHSGTAIVEFNKD 72 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSEEEEEECSSBEEEEEEEECCSS
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCceeEecccCCCCceeEEEEecCC
Confidence 3445666541 246778999977 99988664433 334678999999653
No 366
>3iz5_X 60S ribosomal protein L23A (L23P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_X 2go5_4 2j37_4
Probab=34.46 E-value=49 Score=22.87 Aligned_cols=52 Identities=12% Similarity=0.081 Sum_probs=35.8
Q ss_pred eEEEeccCCCCCCCHHHHHHHhhc-CC-CeeEEEEcCCCCC--eEEEEECCHHHHHHH
Q 043011 22 NLFVANCGPAVGVSYEAIGSVFSA-FG-DVKGIYAADDSGA--RVIVSYFDEGSAQAA 75 (133)
Q Consensus 22 ~L~V~Nl~~~~~vte~~L~~~F~~-fG-~V~~v~~~~~~kg--~afV~f~~~~~A~~A 75 (133)
+-|+-.++.. .+..++++.+++ || +|.+|.......| -|||....-.+|...
T Consensus 90 N~~vF~Vd~~--AnK~qIK~AVEklf~VkV~kVNTl~~~~g~KKAyV~L~~~~daldv 145 (152)
T 3iz5_X 90 NTLVFIVDLK--ADKKKIKAAVKKMYDIQAKKVNTLIRPDGKKKAYVKLTPDYDALDV 145 (152)
T ss_dssp SEEEEEECSS--CCSHHHHHHHHHHHTCCEEEEEEEECTTSSEEEEEEECTTSCHHHH
T ss_pred CEEEEEEcCC--CCHHHHHHHHHHHhCCcceEEEeeEcCCCceEEEEEcCCCCcHHHH
Confidence 4556667888 999999877766 45 5777765333334 499999877776654
No 367
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=34.27 E-value=37 Score=28.54 Aligned_cols=46 Identities=9% Similarity=0.083 Sum_probs=33.7
Q ss_pred HHHHHHh----hcCCCeeEEEEc----CCCCCeEEEEECCHHHHHHHHHHhcCC
Q 043011 37 EAIGSVF----SAFGDVKGIYAA----DDSGARVIVSYFDEGSAQAAFNSLHSR 82 (133)
Q Consensus 37 ~~L~~~F----~~fG~V~~v~~~----~~~kg~afV~f~~~~~A~~A~~~l~g~ 82 (133)
-||..+| +.+|-|.++.+. ...+.++++.|.|.++|..|+..+-..
T Consensus 358 yDL~~L~iGSEGTLGIITeatLrL~P~P~~~~~~~~~f~d~~~a~~av~~i~~~ 411 (658)
T 4bby_A 358 PDIHHFIMGSEGTLGVITEATIKIRPTPEYQKYGSVAFPNFEQGVACLREIAKQ 411 (658)
T ss_dssp SCTHHHHTTCTTSSCEEEEEEEECEECCSEEEEEEEEESSHHHHHHHHHHHHHT
T ss_pred cCHHHHhccCCCcCcceeeeeeeeccCCccccccccccCCchhhhhhHHHHHHc
Confidence 3577777 466778888762 234567889999999999999877433
No 368
>1ytr_A Bacteriocin plantaricin A; antibiotic, pheromone, amphipathic helix, micelle; NMR {Synthetic}
Probab=31.17 E-value=25 Score=16.55 Aligned_cols=12 Identities=17% Similarity=0.587 Sum_probs=9.8
Q ss_pred HHHHHHHhhcCC
Q 043011 36 YEAIGSVFSAFG 47 (133)
Q Consensus 36 e~~L~~~F~~fG 47 (133)
-.+++.+|.++|
T Consensus 14 ikqvkklfkkwg 25 (26)
T 1ytr_A 14 IKQVKKLFKKWG 25 (26)
T ss_dssp HHHHHHHHTTCC
T ss_pred HHHHHHHHHHcC
Confidence 367889999987
No 369
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A*
Probab=29.63 E-value=39 Score=27.35 Aligned_cols=38 Identities=13% Similarity=0.088 Sum_probs=26.2
Q ss_pred HHHHh--hcCCCeeEEEEc----CCCCCeEEEEECCHHHHHHHH
Q 043011 39 IGSVF--SAFGDVKGIYAA----DDSGARVIVSYFDEGSAQAAF 76 (133)
Q Consensus 39 L~~~F--~~fG~V~~v~~~----~~~kg~afV~f~~~~~A~~A~ 76 (133)
|+.+| +.+|-|.++.+. .+....+++.|.+.++|..|+
T Consensus 218 l~~l~~g~~lGiVt~~~l~l~p~p~~~~~~~~~f~~~~~~~~~~ 261 (520)
T 1wvf_A 218 LDGMFTQANYGICTKMGFWLMPKPPVFKPFEVIFEDEADIVEIV 261 (520)
T ss_dssp CHHHHTTSSSCEEEEEEEECEECCSEEEEEEEEECCGGGHHHHH
T ss_pred hhhhccCCceEEEEEEEEEEEecCCeEEEEEEEeCCHHHHHHHH
Confidence 56777 468989888762 122345788999988876644
No 370
>1o57_A PUR operon repressor; purine operon repressor, helix-turn-helix domain, phosphoribosyltranseferases, domain recombination, DNA binding; HET: EPE P6G 2PE PG4 1PE; 2.20A {Bacillus subtilis} SCOP: a.4.5.40 c.61.1.1 PDB: 1p4a_A*
Probab=29.63 E-value=1.1e+02 Score=22.87 Aligned_cols=42 Identities=14% Similarity=0.162 Sum_probs=31.8
Q ss_pred HHHHhhcCCCeeEEEEcCCCCCeEEEEECCHHHHHHHHHHhc
Q 043011 39 IGSVFSAFGDVKGIYAADDSGARVIVSYFDEGSAQAAFNSLH 80 (133)
Q Consensus 39 L~~~F~~fG~V~~v~~~~~~kg~afV~f~~~~~A~~A~~~l~ 80 (133)
+++.|+++|-=.=..+.+...|+-|+-+.+.+.|+..++.|-
T Consensus 47 ~~~~~~~~~~~~~~~~~ga~gg~~~~~~~~~~~a~~~~~~l~ 88 (291)
T 1o57_A 47 IKQTFEQQGIGTLLTVPGAAGGVKYIPKMKQAEAEEFVQTLG 88 (291)
T ss_dssp HHHHHHHTTSEEEEEECSTTCEEEEEECCCHHHHHHHHHHHH
T ss_pred HHHHHHhcCCceEEEecCCCCceEEcccCCHHHHHHHHHHHH
Confidence 368899997432334567888888999999999998887664
No 371
>3swz_A Steroid 17-alpha-hydroxylase/17,20 lyase; cytochrome P450, CYP17A1, P450C17, P450 17A1, monooxyg 17A-hydroxylase, heme protein; HET: HEM TOK; 2.40A {Homo sapiens} PDB: 3ruk_A*
Probab=29.50 E-value=97 Score=23.88 Aligned_cols=54 Identities=9% Similarity=-0.006 Sum_probs=36.6
Q ss_pred CCeEEEeccCCCC--CCCHHHHHHHhhcCCCeeEEEEcCCCCCeEEEEECCHHHHHHHHH
Q 043011 20 SPNLFVANCGPAV--GVSYEAIGSVFSAFGDVKGIYAADDSGARVIVSYFDEGSAQAAFN 77 (133)
Q Consensus 20 ~~~L~V~Nl~~~~--~vte~~L~~~F~~fG~V~~v~~~~~~kg~afV~f~~~~~A~~A~~ 77 (133)
...-+|||+..-. +-....+.++..+||+|-.+++. +.-.|...+.+.|..++.
T Consensus 14 ~~lPliGnl~~l~~~~~~~~~~~~~~~kYG~i~~~~~g----~~~~vvv~~p~~~k~il~ 69 (494)
T 3swz_A 14 LSLPLVGSLPFLPRHGHMHNNFFKLQKKYGPIYSVRMG----TKTTVIVGHHQLAKEVLI 69 (494)
T ss_dssp BCCCEEEEESSCTTSSCHHHHHHHTHHHHCSEEEEEET----TEEEEEECSHHHHHHHHT
T ss_pred CCCCeEcchHHhCCCCchhHHHHHHHHHcCCEEEEEeC----CCCEEEECCHHHHHHHHH
Confidence 3455799986430 01135678888999999999883 234566778888877664
No 372
>2e7g_A Putative ribosome-binding factor A; RBFA, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.52.7.1
Probab=26.93 E-value=1.4e+02 Score=19.59 Aligned_cols=35 Identities=11% Similarity=0.045 Sum_probs=19.1
Q ss_pred CCCeeEEEEcCC-CCCeEEEE-ECCHHHHHHHHHHhc
Q 043011 46 FGDVKGIYAADD-SGARVIVS-YFDEGSAQAAFNSLH 80 (133)
Q Consensus 46 fG~V~~v~~~~~-~kg~afV~-f~~~~~A~~A~~~l~ 80 (133)
+=.|.+|.+..+ +-..+||. |-+.++.+.++.+|+
T Consensus 43 ~vtVt~V~vS~Dl~~AkVyvs~~~~~~~~~~~~~~L~ 79 (129)
T 2e7g_A 43 NVELSKVSLTPDFSACRAYWKTTLSAEQNAHMEAVLQ 79 (129)
T ss_dssp TCCEEEEEECTTSCCEEEEECCCSCHHHHHHHHHHHH
T ss_pred eeEEEEEEECCCCcEEEEEEEecCChhhHHHHHHHHH
Confidence 447889999544 23344555 445444444444444
No 373
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=26.57 E-value=1.3e+02 Score=19.19 Aligned_cols=60 Identities=7% Similarity=0.018 Sum_probs=45.3
Q ss_pred CCCCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEcCCCCCeEEEEECCHHHHHHHHHHhcCC
Q 043011 18 ERSPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAADDSGARVIVSYFDEGSAQAAFNSLHSR 82 (133)
Q Consensus 18 ~~~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~~~~kg~afV~f~~~~~A~~A~~~l~g~ 82 (133)
...+-+-|-|+|.. +-..++--.....|----+.. -.|.|.+.|.+.++...|+..|-+.
T Consensus 10 kqnclikiinipqg--tlkaevvlavrhlgyefycdy---idgqamirfqnsdeqrlaiqkllnh 69 (129)
T 4eyt_A 10 KQNCLIKIINIPQG--TLKAEVVLAVRHLGYEFYCDY---IDGQAMIRFQNSDEQRLAIQKLLNH 69 (129)
T ss_dssp CCSCEEEEECCCTT--CCHHHHHHHHHTTCCCEEEEE---CSSCEEEEESSHHHHHHHHHHHEET
T ss_pred hhCcEEEEEecCCC--ceeeeeEEeehhcCeeEeeee---ecCeeEEEecCChHHHHHHHHHHhc
Confidence 35677888899988 888887766666664333333 4688999999999999999887443
No 374
>2gu3_A YPMB protein; APC1927, structural genomics, PSI, protein structure initiat midwest center for structural genomics, MCSG, unknown funct; 1.74A {Bacillus subtilis subsp} SCOP: d.17.1.6 d.17.1.6
Probab=26.55 E-value=86 Score=20.85 Aligned_cols=28 Identities=7% Similarity=-0.006 Sum_probs=20.6
Q ss_pred EeccCCCCCCCHHHHHHHhh-cCC--CeeEEEE
Q 043011 25 VANCGPAVGVSYEAIGSVFS-AFG--DVKGIYA 54 (133)
Q Consensus 25 V~Nl~~~~~vte~~L~~~F~-~fG--~V~~v~~ 54 (133)
|-+.... +|+++.++++. .++ +|.++.+
T Consensus 68 v~~~~~G--iSe~~a~~~v~~~~~~~~I~~v~l 98 (136)
T 2gu3_A 68 SKEAKEG--ISEDKAAKIIKDEGLVSKQKEVHL 98 (136)
T ss_dssp EEEGGGS--CCHHHHHHHHHHTTCCSEEEEEEE
T ss_pred EEEHhhC--CCHHHHHHHHHHhCCccceeEEee
Confidence 5566666 99999999994 555 5777765
No 375
>3ulj_A LIN28B, DNA-binding protein; beta barrel, cold shock domain fold, nucleic acid binding, D binding protein; 1.06A {Silurana} PDB: 4a4i_A
Probab=25.38 E-value=43 Score=20.89 Aligned_cols=15 Identities=7% Similarity=-0.294 Sum_probs=10.8
Q ss_pred EEEcCCCCCeEEEEE
Q 043011 52 IYAADDSGARVIVSY 66 (133)
Q Consensus 52 v~~~~~~kg~afV~f 66 (133)
|+.....|||+||+-
T Consensus 13 VKWFn~~KGfGFI~~ 27 (90)
T 3ulj_A 13 CKWFNVRMGFGFISM 27 (90)
T ss_dssp EEEEETTTTEEEEEE
T ss_pred EEEeeCCCCeEEeEe
Confidence 344466899999963
No 376
>2xk0_A Polycomb protein PCL; transcription, aromatic CAGE; NMR {Drosophila melanogaster}
Probab=25.27 E-value=45 Score=20.00 Aligned_cols=14 Identities=7% Similarity=0.382 Sum_probs=10.8
Q ss_pred CCCCeEEEEECCHH
Q 043011 57 DSGARVIVSYFDEG 70 (133)
Q Consensus 57 ~~kg~afV~f~~~~ 70 (133)
..+..|+|.|+|..
T Consensus 39 ~~~~~ClV~FeD~S 52 (69)
T 2xk0_A 39 QTSDQYLIRFDDQS 52 (69)
T ss_dssp ECSSCEEEEETTCC
T ss_pred cCCceEEEEecCCc
Confidence 36788999998753
No 377
>1ik9_C DNA ligase IV; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens}
Probab=24.53 E-value=49 Score=17.15 Aligned_cols=13 Identities=23% Similarity=0.442 Sum_probs=11.5
Q ss_pred CCHHHHHHHhhcC
Q 043011 34 VSYEAIGSVFSAF 46 (133)
Q Consensus 34 vte~~L~~~F~~f 46 (133)
++.++|+.+|.+.
T Consensus 22 ~t~~eLk~il~~m 34 (37)
T 1ik9_C 22 TDLNQLKEVFSGI 34 (37)
T ss_dssp CCHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHc
Confidence 8999999999875
No 378
>1cqm_A Ribosomal protein S6; alzheimer disease, oligomerization; 1.65A {Thermus thermophilus} SCOP: d.58.14.1 PDB: 1cqn_A 1qjh_A 1ris_A 1fka_F 1gix_I* 1hnw_F* 1hnx_F* 1hnz_F* 1hr0_F 1i94_F* 1i95_F* 1i96_F* 1i97_F* 1ibk_F* 1ibl_F* 1ibm_F 1j5e_F 1jgo_I* 1jgp_I* 1jgq_I* ...
Probab=24.40 E-value=1.3e+02 Score=18.72 Aligned_cols=51 Identities=8% Similarity=-0.008 Sum_probs=29.8
Q ss_pred EEEeccCCCCCCCHHHHHHHhhcC--------CCeeEEEEc----------CCCCC-eEEEEECCHHHHHHHHH
Q 043011 23 LFVANCGPAVGVSYEAIGSVFSAF--------GDVKGIYAA----------DDSGA-RVIVSYFDEGSAQAAFN 77 (133)
Q Consensus 23 L~V~Nl~~~~~vte~~L~~~F~~f--------G~V~~v~~~----------~~~kg-~afV~f~~~~~A~~A~~ 77 (133)
+|| +.++ ++++++..+..+| |.|.++..- +..+| |..+.|....++.+-++
T Consensus 7 ~~I--l~p~--l~~e~~~~~~~~~~~~i~~~gg~i~~~e~wG~R~LAY~I~k~~~G~Y~l~~f~a~~~~i~ele 76 (101)
T 1cqm_A 7 NIV--LNPN--LDQSQLALEKEIIQRALENYGARVEKVAILGLRRLAYPIAKDPQGYFLWYQVEMPEDRVNDLA 76 (101)
T ss_dssp EEE--ECTT--CCHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEECHHHHHHHH
T ss_pred EEE--ECCC--CCHHHHHHHHHHHHHHHHHCCCEEEEEEeecCcccccCcCCCCEEEEEEEEEEeChHHHHHHH
Confidence 444 4677 8898887665555 456666431 22455 45677766555544443
No 379
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=24.25 E-value=99 Score=17.09 Aligned_cols=55 Identities=13% Similarity=-0.065 Sum_probs=38.0
Q ss_pred CCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEcCCCCCeEEEEECCHHHHHHHHHH
Q 043011 20 SPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAADDSGARVIVSYFDEGSAQAAFNS 78 (133)
Q Consensus 20 ~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~~~~kg~afV~f~~~~~A~~A~~~ 78 (133)
..++.|.++.-. -=...+++.+.+ ..|.++.+ .-..+-+-|.|.+.++-..|++.
T Consensus 6 ~~~~~v~gm~C~--~C~~~ie~~l~~-~gv~~~~v-~~~~~~~~v~~~~~~~i~~~i~~ 60 (73)
T 3fry_A 6 KIVLELSGLSCH--HCVARVKKALEE-AGAKVEKV-DLNEAVVAGNKEDVDKYIKAVEA 60 (73)
T ss_dssp EEEEEEESSBCG--GGHHHHHHHHHH-TTCEEEEE-CSSEEEEEEEGGGHHHHHHHHHH
T ss_pred EEEEEECCCCCH--HHHHHHHHHhcc-CCcEEEEE-EccCCEEEEEECCHHHHHHHHHH
Confidence 346778887744 567888888988 88988887 33456678888744444555543
No 380
>3pm0_A Cypib1, cytochrome P450 1B1; CYP1B1, monooxygenase, alpha-naphthoflavone, 17BETA-estradiol, oxidoreductase; HET: HEM BHF; 2.70A {Homo sapiens}
Probab=23.98 E-value=1.2e+02 Score=23.29 Aligned_cols=52 Identities=17% Similarity=0.156 Sum_probs=28.5
Q ss_pred CeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEEEcCCCCCeEEEEECCHHHHHHHH
Q 043011 21 PNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIYAADDSGARVIVSYFDEGSAQAAF 76 (133)
Q Consensus 21 ~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~~~~~~kg~afV~f~~~~~A~~A~ 76 (133)
..-++||+..-..-....+.++..+||+|-.+.+. +.-+|...|.+.+...+
T Consensus 16 ~~P~iG~~~~~~~~~~~~~~~~~~~yG~i~~~~~g----~~~~vvv~dp~~i~~il 67 (507)
T 3pm0_A 16 AWPLIGNAAAVGQAAHLSFARLARRYGDVFQIRLG----SCPIVVLNGERAIHQAL 67 (507)
T ss_dssp ------------CCHHHHHHHHHHHHCSEEEEEET----TEEEEEECSHHHHHHHH
T ss_pred CCCeeCchhhcCccHHHHHHHHHHHhCCEEEEEEC----CccEEEECCHHHHHHHH
Confidence 34567887543112345678899999999988872 33467777888777665
No 381
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=23.58 E-value=88 Score=23.11 Aligned_cols=31 Identities=16% Similarity=0.235 Sum_probs=25.1
Q ss_pred CCeEEEeccCCCCCCCHHHHHHHhhcCCCeeEEE
Q 043011 20 SPNLFVANCGPAVGVSYEAIGSVFSAFGDVKGIY 53 (133)
Q Consensus 20 ~~~L~V~Nl~~~~~vte~~L~~~F~~fG~V~~v~ 53 (133)
...+.|+|+|.. ++..-|.+++.. +.+.+..
T Consensus 110 ~~~~iv~NlPy~--iss~il~~ll~~-~~~~~~~ 140 (271)
T 3fut_A 110 QGSLLVANLPYH--IATPLVTRLLKT-GRFARLV 140 (271)
T ss_dssp TTEEEEEEECSS--CCHHHHHHHHHH-CCEEEEE
T ss_pred CccEEEecCccc--ccHHHHHHHhcC-CCCCEEE
Confidence 356789999999 999999999987 6665443
No 382
>4aj5_1 SKA3, spindle and kinetochore-associated protein 3; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}
Probab=22.95 E-value=29 Score=22.42 Aligned_cols=11 Identities=27% Similarity=0.552 Sum_probs=8.5
Q ss_pred HHHHHHhhcCC
Q 043011 37 EAIGSVFSAFG 47 (133)
Q Consensus 37 ~~L~~~F~~fG 47 (133)
..|+++|.+||
T Consensus 91 ~~ire~fqKYG 101 (101)
T 4aj5_1 91 MKIREYFQKYG 101 (101)
T ss_dssp HHHHHHHHHC-
T ss_pred HHHHHHHHHcC
Confidence 45789999998
No 383
>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A
Probab=22.13 E-value=62 Score=18.62 Aligned_cols=28 Identities=11% Similarity=0.115 Sum_probs=19.2
Q ss_pred eEEEEcCC-CCCeEEEEECCHHHHHHHHH
Q 043011 50 KGIYAADD-SGARVIVSYFDEGSAQAAFN 77 (133)
Q Consensus 50 ~~v~~~~~-~kg~afV~f~~~~~A~~A~~ 77 (133)
..|....+ .+..-.=+|.+.++|..|.+
T Consensus 16 A~I~~~~~~g~r~~LGtf~T~eeAA~AyD 44 (63)
T 1gcc_A 16 AEIRDPAKNGARVWLGTFETAEDAALAYD 44 (63)
T ss_dssp EEEEETTTTSEEEEEEEESSHHHHHHHHH
T ss_pred EEEccccCCCeEEEeeeCCCHHHHHHHHH
Confidence 45555332 34555678999999999875
No 384
>3n9y_A Cholesterol SIDE-chain cleavage enzyme; cytochrome P450, cholesterol SIDE chain cleavage, structural genomics, structural genomics consortium, SGC; HET: HEM CLR; 2.10A {Homo sapiens} PDB: 3n9z_A* 3na1_A* 3na0_A* 3mzs_A*
Probab=21.39 E-value=1.7e+02 Score=22.36 Aligned_cols=38 Identities=13% Similarity=0.034 Sum_probs=29.1
Q ss_pred HHHHHHHhhcCCCeeEEEEcCCCCCeEEEEECCHHHHHHHHH
Q 043011 36 YEAIGSVFSAFGDVKGIYAADDSGARVIVSYFDEGSAQAAFN 77 (133)
Q Consensus 36 e~~L~~~F~~fG~V~~v~~~~~~kg~afV~f~~~~~A~~A~~ 77 (133)
...+.++..+||+|..+.+. +.-.|...|.+.+...+.
T Consensus 35 ~~~~~~l~~kYG~i~~~~~g----~~~~vvv~dp~~~~~il~ 72 (487)
T 3n9y_A 35 HLHHVQNFQKYGPIYREKLG----NVESVYVIDPEDVALLFK 72 (487)
T ss_dssp HHHHHHHHHHHCSEEEEEET----TEEEEEECCHHHHHHHHH
T ss_pred hHHHHHHHHHcCceeeccCC----CCCEEEEcCHHHHHHHHH
Confidence 35578889999999998872 234688889998887664
No 385
>2od0_A Hypothetical protein VP1028; structural genomics, unknown functi 2, protein structure initiative, midwest center for structu genomics; 1.95A {Vibrio parahaemolyticus} SCOP: d.198.5.2
Probab=21.21 E-value=84 Score=19.61 Aligned_cols=22 Identities=18% Similarity=0.176 Sum_probs=18.4
Q ss_pred CCHHHHHHHhhcCCCeeEEEEc
Q 043011 34 VSYEAIGSVFSAFGDVKGIYAA 55 (133)
Q Consensus 34 vte~~L~~~F~~fG~V~~v~~~ 55 (133)
.+++.+++.|+..|+|+.-.+.
T Consensus 4 ~~~~~i~e~l~~lg~i~~r~MF 25 (105)
T 2od0_A 4 PILKDSMKLFEALGTIKSRSMF 25 (105)
T ss_dssp THHHHHHHHHGGGSCCEEEEET
T ss_pred hHHHHHHHHHhccCCceEeecc
Confidence 5678899999999999877664
No 386
>2k5n_A Putative cold-shock protein; GFT protein structure, PSI, nesgc, OB fold, cold shock structural genomics; NMR {Pectobacterium atrosepticum}
Probab=21.01 E-value=77 Score=18.82 Aligned_cols=13 Identities=0% Similarity=-0.276 Sum_probs=9.8
Q ss_pred CCCCCeEEEEECC
Q 043011 56 DDSGARVIVSYFD 68 (133)
Q Consensus 56 ~~~kg~afV~f~~ 68 (133)
...|||+||+=.+
T Consensus 11 n~~KGfGFI~~~d 23 (74)
T 2k5n_A 11 FKDKGFGFIKDEN 23 (74)
T ss_dssp ETTTTEEEEEESS
T ss_pred ECCCCeEEEecCC
Confidence 4578999988764
No 387
>3e6i_A CYPIIE1, P450-J, cytochrome P450 2E1; CYP2E1, monooxygenase, acetaminophen, oxidoreductase, heme, endoplasmic reticulum, iron, membrane; HET: HEM; 2.20A {Homo sapiens} PDB: 3e4e_A* 3gph_A* 3koh_A* 3lc4_A* 3t3z_A*
Probab=20.33 E-value=1.3e+02 Score=22.87 Aligned_cols=53 Identities=15% Similarity=0.142 Sum_probs=36.5
Q ss_pred CeEEEeccCCCC-CCCHHHHHHHhhcCCCeeEEEEcCCCCCeEEEEECCHHHHHHHHH
Q 043011 21 PNLFVANCGPAV-GVSYEAIGSVFSAFGDVKGIYAADDSGARVIVSYFDEGSAQAAFN 77 (133)
Q Consensus 21 ~~L~V~Nl~~~~-~vte~~L~~~F~~fG~V~~v~~~~~~kg~afV~f~~~~~A~~A~~ 77 (133)
..-+|||+..-. .-....+.++..+||+|-.+.+. +.-+|...+.+.+..++.
T Consensus 17 ~~PliG~~~~~~~~~~~~~~~~~~~~yG~v~~~~~g----~~~~vvv~~~~~v~~il~ 70 (476)
T 3e6i_A 17 PLPIIGNLFQLELKNIPKSFTRLAQRFGPVFTLYVG----SQRMVVMHGYKAVKEALL 70 (476)
T ss_dssp CBTTTBTGGGCCTTCHHHHHHHHHHHHCSEEEEEET----TEEEEEECSHHHHHHHHH
T ss_pred CcccccChhhhccccHhHHHHHHHHHhCCEEEEEEC----CccEEEECCHHHHHHHHh
Confidence 344678875420 02245678899999999888872 345677888888887775
No 388
>1eij_A Hypothetical protein MTH1615; beta-helix, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: a.5.6.1
Probab=20.22 E-value=58 Score=20.03 Aligned_cols=20 Identities=5% Similarity=0.182 Sum_probs=16.2
Q ss_pred eccCCCCCCCHHHHHHHhhcCC
Q 043011 26 ANCGPAVGVSYEAIGSVFSAFG 47 (133)
Q Consensus 26 ~Nl~~~~~vte~~L~~~F~~fG 47 (133)
|.|... +||++|+++.++..
T Consensus 50 Gqi~~k--i~e~~L~~lL~~i~ 69 (80)
T 1eij_A 50 GRVRSK--ITDEQLKELLKRVA 69 (80)
T ss_dssp CSSCCC--CCHHHHHHHHHHHS
T ss_pred CCCCCC--cCHHHHHHHHHHHc
Confidence 456777 99999999998753
Done!