BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>043012
MVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVINVLDEHRSSF
LELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQI
PKLPDVDQRLQKNAVDASNVMDRPPISELAG

High Scoring Gene Products

Symbol, full name Information P value
EMB25
AT1G70070 		protein from Arabidopsis thaliana 1.1e-49

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  043012
        (151 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2020573 - symbol:EMB25 "EMBRYO DEFECTIVE 25" s...   528  1.1e-49   1


>TAIR|locus:2020573 [details] [associations]
            symbol:EMB25 "EMBRYO DEFECTIVE 25" species:3702
            "Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
            helicase activity" evidence=IEA;ISS] [GO:0009507 "chloroplast"
            evidence=ISM;IDA] [GO:0016818 "hydrolase activity, acting on acid
            anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
            [GO:0009793 "embryo development ending in seed dormancy"
            evidence=IMP] [GO:0010497 "plasmodesmata-mediated intercellular
            transport" evidence=NAS;IMP] [GO:0003724 "RNA helicase activity"
            evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
            evidence=IDA] [GO:0016441 "posttranscriptional gene silencing"
            evidence=IMP] [GO:0009570 "chloroplast stroma" evidence=IDA]
            [GO:0016556 "mRNA modification" evidence=RCA] InterPro:IPR001650
            InterPro:IPR011545 InterPro:IPR012961 Pfam:PF00270 Pfam:PF00271
            Pfam:PF08148 PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
            GenomeReviews:CT485782_GR GO:GO:0005524 GO:GO:0009570 GO:GO:0003676
            GO:GO:0009793 GO:GO:0031047 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0010494 GO:GO:0008026 EMBL:AC002062
            GO:GO:0003724 GO:GO:0010497 eggNOG:COG4581 GO:GO:0016441
            HOGENOM:HOG000245391 EMBL:AK316759 EMBL:AF387007 IPI:IPI00538730
            PIR:D96723 RefSeq:NP_177164.1 UniGene:At.35348
            ProteinModelPortal:B9DFG3 SMR:B9DFG3 PaxDb:B9DFG3 PRIDE:B9DFG3
            EnsemblPlants:AT1G70070.1 GeneID:843343 KEGG:ath:AT1G70070
            GeneFarm:2280 TAIR:At1g70070 InParanoid:Q94EZ6 OMA:PSYGMVL
            PhylomeDB:B9DFG3 ProtClustDB:CLSN2682754 Genevestigator:B9DFG3
            Uniprot:B9DFG3
        Length = 1171

 Score = 528 (190.9 bits), Expect = 1.1e-49, P = 1.1e-49
 Identities = 101/151 (66%), Positives = 121/151 (80%)

Query:     1 MVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVINVLDEHRSSF 60
             MVLRNK L+DLKP QLA VCASLVSEGIKVR W++N+YIYEPS TV++++N L++ RSS 
Sbjct:  1021 MVLRNKALVDLKPPQLAGVCASLVSEGIKVRPWRDNNYIYEPSDTVVDMVNFLEDQRSSL 1080

Query:    61 LELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMXXXXXXXXXXXXXXXTIDLLAQI 120
             ++LQEKH V IPCCLD QFSGMVEAWASGL+W+EMMM               TIDLLAQI
Sbjct:  1081 IKLQEKHEVMIPCCLDVQFSGMVEAWASGLSWKEMMMECAMDEGDLARLLRRTIDLLAQI 1140

Query:   121 PKLPDVDQRLQKNAVDASNVMDRPPISELAG 151
             PKLPD+D  LQ++A  A+++MDRPPISELAG
Sbjct:  1141 PKLPDIDPVLQRSAAAAADIMDRPPISELAG 1171


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.133   0.394    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      151       136   0.00091  102 3  11 22  0.41    31
                                                     30  0.45    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  593 (63 KB)
  Total size of DFA:  140 KB (2086 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  12.40u 0.11s 12.51t   Elapsed:  00:00:01
  Total cpu time:  12.40u 0.11s 12.51t   Elapsed:  00:00:01
  Start:  Sat May 11 14:17:01 2013   End:  Sat May 11 14:17:02 2013

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