BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043012
(151 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|291464071|gb|ADE05573.1| increased size exclusion limit 2 [Nicotiana benthamiana]
Length = 1159
Score = 269 bits (688), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 125/151 (82%), Positives = 142/151 (94%)
Query: 1 MVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVINVLDEHRSSF 60
MVLRNK+LLDLKPAQLAAVC SLVSEGI++R WKNNS++YEPSTTV+NVI++L+E +SS
Sbjct: 1009 MVLRNKLLLDLKPAQLAAVCGSLVSEGIRLRPWKNNSFVYEPSTTVLNVIDLLEETKSSI 1068
Query: 61 LELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQI 120
LELQEKHGV+IPCCLDSQFSGMVEAWASGLTW+E+MMDCA+D+GDLARLLRRTIDLLAQI
Sbjct: 1069 LELQEKHGVQIPCCLDSQFSGMVEAWASGLTWKEIMMDCAMDEGDLARLLRRTIDLLAQI 1128
Query: 121 PKLPDVDQRLQKNAVDASNVMDRPPISELAG 151
PKLPD+D LQ NA AS+VMDRPPISELAG
Sbjct: 1129 PKLPDIDPLLQSNAKGASSVMDRPPISELAG 1159
>gi|296086480|emb|CBI32069.3| unnamed protein product [Vitis vinifera]
Length = 1064
Score = 269 bits (687), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 127/151 (84%), Positives = 140/151 (92%)
Query: 1 MVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVINVLDEHRSSF 60
MVLR+K+LL LKPAQLAAVC SLVSEGIKVR WKNNSYIYE STTVINVI++LDE R+S
Sbjct: 914 MVLRSKVLLGLKPAQLAAVCGSLVSEGIKVRPWKNNSYIYEASTTVINVISLLDEQRNSL 973
Query: 61 LELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQI 120
L+LQEKH V+IPCCLDSQFSGMVEAWASGLTWRE+MMDCA+D+GDLARLLRRTID+LAQI
Sbjct: 974 LQLQEKHDVQIPCCLDSQFSGMVEAWASGLTWREIMMDCAMDEGDLARLLRRTIDILAQI 1033
Query: 121 PKLPDVDQRLQKNAVDASNVMDRPPISELAG 151
PKLPD+D LQ NA+ ASNVMDRPPISELAG
Sbjct: 1034 PKLPDIDPLLQSNAMTASNVMDRPPISELAG 1064
>gi|225424807|ref|XP_002267766.1| PREDICTED: DEAD-box ATP-dependent RNA helicase ISE2,
chloroplastic-like [Vitis vinifera]
Length = 1174
Score = 268 bits (686), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 127/151 (84%), Positives = 140/151 (92%)
Query: 1 MVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVINVLDEHRSSF 60
MVLR+K+LL LKPAQLAAVC SLVSEGIKVR WKNNSYIYE STTVINVI++LDE R+S
Sbjct: 1024 MVLRSKVLLGLKPAQLAAVCGSLVSEGIKVRPWKNNSYIYEASTTVINVISLLDEQRNSL 1083
Query: 61 LELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQI 120
L+LQEKH V+IPCCLDSQFSGMVEAWASGLTWRE+MMDCA+D+GDLARLLRRTID+LAQI
Sbjct: 1084 LQLQEKHDVQIPCCLDSQFSGMVEAWASGLTWREIMMDCAMDEGDLARLLRRTIDILAQI 1143
Query: 121 PKLPDVDQRLQKNAVDASNVMDRPPISELAG 151
PKLPD+D LQ NA+ ASNVMDRPPISELAG
Sbjct: 1144 PKLPDIDPLLQSNAMTASNVMDRPPISELAG 1174
>gi|147769115|emb|CAN76232.1| hypothetical protein VITISV_039406 [Vitis vinifera]
Length = 239
Score = 268 bits (684), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 127/151 (84%), Positives = 140/151 (92%)
Query: 1 MVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVINVLDEHRSSF 60
MVLR+K+LL LKPAQLAAVC SLVSEGIKVR WKNNSYIYE STTVINVI++LDE R+S
Sbjct: 89 MVLRSKVLLGLKPAQLAAVCGSLVSEGIKVRPWKNNSYIYEASTTVINVISLLDEQRNSL 148
Query: 61 LELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQI 120
L+LQEKH V+IPCCLDSQFSGMVEAWASGLTWRE+MMDCA+D+GDLARLLRRTID+LAQI
Sbjct: 149 LQLQEKHDVQIPCCLDSQFSGMVEAWASGLTWREIMMDCAMDEGDLARLLRRTIDILAQI 208
Query: 121 PKLPDVDQRLQKNAVDASNVMDRPPISELAG 151
PKLPD+D LQ NA+ ASNVMDRPPISELAG
Sbjct: 209 PKLPDIDPLLQSNAMTASNVMDRPPISELAG 239
>gi|224110980|ref|XP_002315703.1| predicted protein [Populus trichocarpa]
gi|222864743|gb|EEF01874.1| predicted protein [Populus trichocarpa]
Length = 736
Score = 261 bits (667), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 121/151 (80%), Positives = 138/151 (91%)
Query: 1 MVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVINVLDEHRSSF 60
MVLR++ILLDLKP QLAAVCAS+VSEGIKVR W+NN+YIYEPS+ VINVIN+L+E RS+
Sbjct: 586 MVLRSRILLDLKPGQLAAVCASVVSEGIKVRAWENNNYIYEPSSAVINVINILNEQRSNL 645
Query: 61 LELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQI 120
+LQEKHGVEI CCLDSQFSGMVEAWA+GLTW+EMMMDCA+DDGDLARLLRRTID+LAQI
Sbjct: 646 SKLQEKHGVEITCCLDSQFSGMVEAWAAGLTWKEMMMDCAMDDGDLARLLRRTIDILAQI 705
Query: 121 PKLPDVDQRLQKNAVDASNVMDRPPISELAG 151
PKLPD+D LQ NA AS++MDRPPISEL G
Sbjct: 706 PKLPDIDPVLQSNAKTASSIMDRPPISELTG 736
>gi|255558340|ref|XP_002520197.1| helicase, putative [Ricinus communis]
gi|223540689|gb|EEF42252.1| helicase, putative [Ricinus communis]
Length = 1161
Score = 256 bits (655), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 120/151 (79%), Positives = 136/151 (90%)
Query: 1 MVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVINVLDEHRSSF 60
MVLR+KILLDLKPAQLAAVCAS+VSEGIKVR W+NNSYIYEPS+ V N+I L+E RSS
Sbjct: 1011 MVLRSKILLDLKPAQLAAVCASVVSEGIKVRAWENNSYIYEPSSAVFNIIGKLEEQRSSL 1070
Query: 61 LELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQI 120
L+LQEKHGVEI C LDSQFSGMVEAWASGL+W+EMMMDCA+DDGDLARL+R+TIDLLAQI
Sbjct: 1071 LQLQEKHGVEISCYLDSQFSGMVEAWASGLSWKEMMMDCAMDDGDLARLIRQTIDLLAQI 1130
Query: 121 PKLPDVDQRLQKNAVDASNVMDRPPISELAG 151
PKLPD+D LQ NA A ++MDRPPISEL+G
Sbjct: 1131 PKLPDIDPALQSNAKTAYDIMDRPPISELSG 1161
>gi|357486299|ref|XP_003613437.1| ATP-dependent RNA helicase DOB1 [Medicago truncatula]
gi|355514772|gb|AES96395.1| ATP-dependent RNA helicase DOB1 [Medicago truncatula]
Length = 1201
Score = 256 bits (653), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 121/151 (80%), Positives = 134/151 (88%)
Query: 1 MVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVINVLDEHRSSF 60
MVLR+KIL +LKPAQLAAVCA LVSEGIKVR WKNN+YIYEPS TV+N+I +LDE R++
Sbjct: 1039 MVLRSKILAELKPAQLAAVCAGLVSEGIKVRPWKNNNYIYEPSATVVNIIGLLDEQRNAL 1098
Query: 61 LELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQI 120
L +QEKHGV I CCLDSQF GMVEAWASGLTWRE+MMDCA+DDGDLARLLRRTIDLLAQI
Sbjct: 1099 LTIQEKHGVTISCCLDSQFCGMVEAWASGLTWREIMMDCAMDDGDLARLLRRTIDLLAQI 1158
Query: 121 PKLPDVDQRLQKNAVDASNVMDRPPISELAG 151
P LPD+D LQKNA A +VMDRPPISELAG
Sbjct: 1159 PNLPDIDPLLQKNARAACDVMDRPPISELAG 1189
>gi|449486574|ref|XP_004157336.1| PREDICTED: DEAD-box ATP-dependent RNA helicase ISE2,
chloroplastic-like [Cucumis sativus]
Length = 1168
Score = 253 bits (646), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 120/151 (79%), Positives = 135/151 (89%)
Query: 1 MVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVINVLDEHRSSF 60
MVLRNK L+ LKP +LAAVCASLVSEGIKVR +NNSYI+EPS TVIN+IN L+E R+S
Sbjct: 1018 MVLRNKFLVQLKPTELAAVCASLVSEGIKVRPGRNNSYIFEPSRTVINMINFLEEQRNSL 1077
Query: 61 LELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQI 120
+LQEKHGV I CCLDSQFSGMVEAWASGLTWRE+MMDCA+D+GDLARLLRRTIDLLAQI
Sbjct: 1078 EDLQEKHGVNISCCLDSQFSGMVEAWASGLTWREIMMDCAMDEGDLARLLRRTIDLLAQI 1137
Query: 121 PKLPDVDQRLQKNAVDASNVMDRPPISELAG 151
PKLPD+D LQ+NA AS+VM+RPPISELAG
Sbjct: 1138 PKLPDIDPSLQRNASTASDVMNRPPISELAG 1168
>gi|449452156|ref|XP_004143826.1| PREDICTED: LOW QUALITY PROTEIN: DEAD-box ATP-dependent RNA helicase
ISE2, chloroplastic-like [Cucumis sativus]
Length = 1193
Score = 253 bits (646), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 120/151 (79%), Positives = 135/151 (89%)
Query: 1 MVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVINVLDEHRSSF 60
MVLRNK L+ LKP +LAAVCASLVSEGIKVR +NNSYI+EPS TVIN+IN L+E R+S
Sbjct: 1043 MVLRNKFLVQLKPTELAAVCASLVSEGIKVRPGRNNSYIFEPSRTVINMINFLEEQRNSL 1102
Query: 61 LELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQI 120
+LQEKHGV I CCLDSQFSGMVEAWASGLTWRE+MMDCA+D+GDLARLLRRTIDLLAQI
Sbjct: 1103 EDLQEKHGVNISCCLDSQFSGMVEAWASGLTWREIMMDCAMDEGDLARLLRRTIDLLAQI 1162
Query: 121 PKLPDVDQRLQKNAVDASNVMDRPPISELAG 151
PKLPD+D LQ+NA AS+VM+RPPISELAG
Sbjct: 1163 PKLPDIDPSLQRNASTASDVMNRPPISELAG 1193
>gi|357138189|ref|XP_003570680.1| PREDICTED: DEAD-box ATP-dependent RNA helicase ISE2,
chloroplastic-like [Brachypodium distachyon]
Length = 1168
Score = 250 bits (639), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 118/151 (78%), Positives = 135/151 (89%)
Query: 1 MVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVINVLDEHRSSF 60
MVLRNK+LLDLKP+QLAAVC SLVSEGIK+R WKN+SY+YEPS+ V VIN LDE R+S
Sbjct: 1018 MVLRNKVLLDLKPSQLAAVCGSLVSEGIKLRPWKNSSYVYEPSSVVTGVINYLDEQRNSL 1077
Query: 61 LELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQI 120
+ELQEKHGV+IPC +D+QF+GMVEAWASGLTWRE+MMD A+DDGDLARLLRRT+DLLAQI
Sbjct: 1078 IELQEKHGVKIPCEIDTQFAGMVEAWASGLTWREIMMDSAMDDGDLARLLRRTMDLLAQI 1137
Query: 121 PKLPDVDQRLQKNAVDASNVMDRPPISELAG 151
PKLPD+D LQKNA A NVMDR P+SELAG
Sbjct: 1138 PKLPDIDPVLQKNAQIACNVMDRVPLSELAG 1168
>gi|2194131|gb|AAB61106.1| Similar to Synechocystis antiviral protein (gb|D90917) [Arabidopsis
thaliana]
Length = 1198
Score = 248 bits (632), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 113/151 (74%), Positives = 136/151 (90%)
Query: 1 MVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVINVLDEHRSSF 60
MVLRNK L+DLKP QLA VCASLVSEGIKVR W++N+YIYEPS TV++++N L++ RSS
Sbjct: 1048 MVLRNKALVDLKPPQLAGVCASLVSEGIKVRPWRDNNYIYEPSDTVVDMVNFLEDQRSSL 1107
Query: 61 LELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQI 120
++LQEKH V IPCCLD QFSGMVEAWASGL+W+EMMM+CA+D+GDLARLLRRTIDLLAQI
Sbjct: 1108 IKLQEKHEVMIPCCLDVQFSGMVEAWASGLSWKEMMMECAMDEGDLARLLRRTIDLLAQI 1167
Query: 121 PKLPDVDQRLQKNAVDASNVMDRPPISELAG 151
PKLPD+D LQ++A A+++MDRPPISELAG
Sbjct: 1168 PKLPDIDPVLQRSAAAAADIMDRPPISELAG 1198
>gi|15223032|ref|NP_177164.1| DEAD-box ATP-dependent RNA helicase ISE2 [Arabidopsis thaliana]
gi|298351833|sp|B9DFG3.2|ISE2_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase ISE2,
chloroplastic; AltName: Full=Protein EMBRYO DEFECTIVE 25;
AltName: Full=Protein INCREASED SIZE EXCLUSION LIMIT 2;
AltName: Full=Protein PIGMENT DEFECTIVE 317; Flags:
Precursor
gi|332196892|gb|AEE35013.1| DEAD-box ATP-dependent RNA helicase ISE2 [Arabidopsis thaliana]
Length = 1171
Score = 248 bits (632), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 113/151 (74%), Positives = 136/151 (90%)
Query: 1 MVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVINVLDEHRSSF 60
MVLRNK L+DLKP QLA VCASLVSEGIKVR W++N+YIYEPS TV++++N L++ RSS
Sbjct: 1021 MVLRNKALVDLKPPQLAGVCASLVSEGIKVRPWRDNNYIYEPSDTVVDMVNFLEDQRSSL 1080
Query: 61 LELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQI 120
++LQEKH V IPCCLD QFSGMVEAWASGL+W+EMMM+CA+D+GDLARLLRRTIDLLAQI
Sbjct: 1081 IKLQEKHEVMIPCCLDVQFSGMVEAWASGLSWKEMMMECAMDEGDLARLLRRTIDLLAQI 1140
Query: 121 PKLPDVDQRLQKNAVDASNVMDRPPISELAG 151
PKLPD+D LQ++A A+++MDRPPISELAG
Sbjct: 1141 PKLPDIDPVLQRSAAAAADIMDRPPISELAG 1171
>gi|222422993|dbj|BAH19480.1| AT1G70070 [Arabidopsis thaliana]
Length = 1171
Score = 247 bits (631), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 113/151 (74%), Positives = 136/151 (90%)
Query: 1 MVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVINVLDEHRSSF 60
MVLRNK L+DLKP QLA VCASLVSEGIKVR W++N+YIYEPS TV++++N L++ RSS
Sbjct: 1021 MVLRNKALVDLKPPQLAGVCASLVSEGIKVRPWRDNNYIYEPSDTVVDMVNFLEDQRSSL 1080
Query: 61 LELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQI 120
++LQEKH V IPCCLD QFSGMVEAWASGL+W+EMMM+CA+D+GDLARLLRRTIDLLAQI
Sbjct: 1081 IKLQEKHEVMIPCCLDVQFSGMVEAWASGLSWKEMMMECAMDEGDLARLLRRTIDLLAQI 1140
Query: 121 PKLPDVDQRLQKNAVDASNVMDRPPISELAG 151
PKLPD+D LQ++A A+++MDRPPISELAG
Sbjct: 1141 PKLPDIDPVLQRSAAAAADIMDRPPISELAG 1171
>gi|218191542|gb|EEC73969.1| hypothetical protein OsI_08870 [Oryza sativa Indica Group]
Length = 1065
Score = 245 bits (626), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 115/151 (76%), Positives = 134/151 (88%)
Query: 1 MVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVINVLDEHRSSF 60
MVLRNK+LLDLKP+QLAA+C SLVSEGIK+R WKN+SY+YEPS+ V VIN L+E R+S
Sbjct: 915 MVLRNKVLLDLKPSQLAAICGSLVSEGIKLRPWKNSSYVYEPSSVVTGVINYLEEQRNSL 974
Query: 61 LELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQI 120
++LQEKH V+IPC +D+QF+GMVEAWASGLTWRE+MMD A+DDGDLARLLRRTIDLLAQI
Sbjct: 975 VDLQEKHSVKIPCEIDAQFAGMVEAWASGLTWREIMMDSAMDDGDLARLLRRTIDLLAQI 1034
Query: 121 PKLPDVDQRLQKNAVDASNVMDRPPISELAG 151
PKLPD+D LQKNA A N+MDR PISELAG
Sbjct: 1035 PKLPDIDPVLQKNAQIACNIMDRVPISELAG 1065
>gi|222623644|gb|EEE57776.1| hypothetical protein OsJ_08317 [Oryza sativa Japonica Group]
Length = 1140
Score = 245 bits (625), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 115/151 (76%), Positives = 134/151 (88%)
Query: 1 MVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVINVLDEHRSSF 60
MVLRNK+LLDLKP+QLAA+C SLVSEGIK+R WKN+SY+YEPS+ V VIN L+E R+S
Sbjct: 990 MVLRNKVLLDLKPSQLAAICGSLVSEGIKLRPWKNSSYVYEPSSVVTGVINYLEEQRNSL 1049
Query: 61 LELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQI 120
++LQEKH V+IPC +D+QF+GMVEAWASGLTWRE+MMD A+DDGDLARLLRRTIDLLAQI
Sbjct: 1050 VDLQEKHSVKIPCEIDAQFAGMVEAWASGLTWREIMMDSAMDDGDLARLLRRTIDLLAQI 1109
Query: 121 PKLPDVDQRLQKNAVDASNVMDRPPISELAG 151
PKLPD+D LQKNA A N+MDR PISELAG
Sbjct: 1110 PKLPDIDPVLQKNAQIACNIMDRVPISELAG 1140
>gi|115448571|ref|NP_001048065.1| Os02g0739000 [Oryza sativa Japonica Group]
gi|46390556|dbj|BAD16042.1| putative helicase [Oryza sativa Japonica Group]
gi|113537596|dbj|BAF09979.1| Os02g0739000 [Oryza sativa Japonica Group]
gi|215704690|dbj|BAG94318.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 1179
Score = 245 bits (625), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 115/151 (76%), Positives = 134/151 (88%)
Query: 1 MVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVINVLDEHRSSF 60
MVLRNK+LLDLKP+QLAA+C SLVSEGIK+R WKN+SY+YEPS+ V VIN L+E R+S
Sbjct: 1029 MVLRNKVLLDLKPSQLAAICGSLVSEGIKLRPWKNSSYVYEPSSVVTGVINYLEEQRNSL 1088
Query: 61 LELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQI 120
++LQEKH V+IPC +D+QF+GMVEAWASGLTWRE+MMD A+DDGDLARLLRRTIDLLAQI
Sbjct: 1089 VDLQEKHSVKIPCEIDAQFAGMVEAWASGLTWREIMMDSAMDDGDLARLLRRTIDLLAQI 1148
Query: 121 PKLPDVDQRLQKNAVDASNVMDRPPISELAG 151
PKLPD+D LQKNA A N+MDR PISELAG
Sbjct: 1149 PKLPDIDPVLQKNAQIACNIMDRVPISELAG 1179
>gi|242066050|ref|XP_002454314.1| hypothetical protein SORBIDRAFT_04g028500 [Sorghum bicolor]
gi|241934145|gb|EES07290.1| hypothetical protein SORBIDRAFT_04g028500 [Sorghum bicolor]
Length = 1173
Score = 244 bits (624), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 115/151 (76%), Positives = 135/151 (89%)
Query: 1 MVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVINVLDEHRSSF 60
MVLRNK+LLDLKP+QLAAVC SLVSEGIK R WKN+SY+YEPS+ VI VI+ L+E R+S
Sbjct: 1023 MVLRNKVLLDLKPSQLAAVCGSLVSEGIKFRPWKNSSYVYEPSSVVIGVISYLEEQRNSL 1082
Query: 61 LELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQI 120
++LQE+HGV+IPC +D+QF+GMVEAWASGLTWRE+MMD A+DDGDLARLLRR+IDLLAQI
Sbjct: 1083 IDLQERHGVKIPCEIDAQFAGMVEAWASGLTWREIMMDSAMDDGDLARLLRRSIDLLAQI 1142
Query: 121 PKLPDVDQRLQKNAVDASNVMDRPPISELAG 151
PKLPD+D LQKNA A +VMDR PISELAG
Sbjct: 1143 PKLPDIDPVLQKNAQIACSVMDRVPISELAG 1173
>gi|356497806|ref|XP_003517748.1| PREDICTED: DEAD-box ATP-dependent RNA helicase ISE2,
chloroplastic-like [Glycine max]
Length = 1162
Score = 244 bits (624), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 119/151 (78%), Positives = 129/151 (85%)
Query: 1 MVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVINVLDEHRSSF 60
MVLRNKILL+LKPAQLAAVCASLVS GIKVR KNNSYIYEPS TV I +LDE RS+
Sbjct: 1012 MVLRNKILLELKPAQLAAVCASLVSAGIKVRPGKNNSYIYEPSATVTKFITLLDEQRSAL 1071
Query: 61 LELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQI 120
L +Q+KH V I CCLDSQF GMVEAWASGLTWRE+MMDCA+DDGDLARLLRRTIDLL QI
Sbjct: 1072 LAMQDKHEVTISCCLDSQFCGMVEAWASGLTWRELMMDCAMDDGDLARLLRRTIDLLVQI 1131
Query: 121 PKLPDVDQRLQKNAVDASNVMDRPPISELAG 151
PKLPD+D L+ NA AS+VMDRPPISEL G
Sbjct: 1132 PKLPDIDPLLKHNAKAASSVMDRPPISELVG 1162
>gi|297841743|ref|XP_002888753.1| PDE317 [Arabidopsis lyrata subsp. lyrata]
gi|297334594|gb|EFH65012.1| PDE317 [Arabidopsis lyrata subsp. lyrata]
Length = 1178
Score = 243 bits (619), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 111/151 (73%), Positives = 135/151 (89%)
Query: 1 MVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVINVLDEHRSSF 60
MVLRNK L+DLKP +LA VCASLVSEGIKVR W++N+YIYEPS TV++++N L++ R S
Sbjct: 1028 MVLRNKALVDLKPPELAGVCASLVSEGIKVRPWRDNNYIYEPSDTVVDMVNFLEDQRISL 1087
Query: 61 LELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQI 120
++LQEKH V IPCCLD QFSGMVEAWASGL+W+EMMM+CA+D+GDLARLLRRTIDLLAQI
Sbjct: 1088 IKLQEKHEVMIPCCLDVQFSGMVEAWASGLSWKEMMMECAMDEGDLARLLRRTIDLLAQI 1147
Query: 121 PKLPDVDQRLQKNAVDASNVMDRPPISELAG 151
PKLPD+D LQ++A A+++MDRPPISELAG
Sbjct: 1148 PKLPDIDPVLQRSAAAAADIMDRPPISELAG 1178
>gi|413938776|gb|AFW73327.1| hypothetical protein ZEAMMB73_223871 [Zea mays]
Length = 151
Score = 238 bits (606), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 113/151 (74%), Positives = 134/151 (88%)
Query: 1 MVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVINVLDEHRSSF 60
MVLRNK+LLDLKP+QLAAVC SLVSEGIK+R WKN+SY+YEPS+ V VI+ L+E R+S
Sbjct: 1 MVLRNKVLLDLKPSQLAAVCGSLVSEGIKLRPWKNSSYVYEPSSVVTGVISYLEEQRNSL 60
Query: 61 LELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQI 120
++LQE+H V+IPC +D+QF+GMVEAWASGLTWRE+MMD A+DDGDLARLLRR+IDLLAQI
Sbjct: 61 IDLQERHSVKIPCEIDAQFAGMVEAWASGLTWREIMMDSAMDDGDLARLLRRSIDLLAQI 120
Query: 121 PKLPDVDQRLQKNAVDASNVMDRPPISELAG 151
PKLPD+D LQKNA A +VMDR PISELAG
Sbjct: 121 PKLPDIDPVLQKNAQIACSVMDRVPISELAG 151
>gi|159902421|gb|ABX10810.1| putative helicase [Glycine max]
gi|159902425|gb|ABX10812.1| putative helicase [Glycine soja]
Length = 184
Score = 178 bits (452), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 85/107 (79%), Positives = 92/107 (85%)
Query: 1 MVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVINVLDEHRSSF 60
MVLRNKILL+LKPAQLAAVCASLVS GIKVR KNNSYIYEPS TV I +LDE RS+
Sbjct: 78 MVLRNKILLELKPAQLAAVCASLVSAGIKVRPGKNNSYIYEPSATVTKFITLLDEQRSAL 137
Query: 61 LELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLA 107
L +Q+KH V I CCLDSQF GMVEAWASGLTWRE+MMDCA+DDGDLA
Sbjct: 138 LAMQDKHEVTISCCLDSQFCGMVEAWASGLTWRELMMDCAMDDGDLA 184
>gi|149391031|gb|ABR25533.1| pde317 cell cycle and DNA processing [Oryza sativa Indica Group]
Length = 93
Score = 152 bits (385), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 73/93 (78%), Positives = 83/93 (89%)
Query: 59 SFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLA 118
S ++LQEKH V+IPC +D+QF+GMVEAWASGLTWRE+MMD A+DDGDLARLLRRTIDLLA
Sbjct: 1 SLVDLQEKHSVKIPCEIDAQFAGMVEAWASGLTWREIMMDSAMDDGDLARLLRRTIDLLA 60
Query: 119 QIPKLPDVDQRLQKNAVDASNVMDRPPISELAG 151
QIPKLPD+D LQKNA A N+MDR PISELAG
Sbjct: 61 QIPKLPDIDPVLQKNAQIACNIMDRVPISELAG 93
>gi|168044682|ref|XP_001774809.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162673833|gb|EDQ60350.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 1036
Score = 147 bits (372), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 71/139 (51%), Positives = 97/139 (69%)
Query: 11 LKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVINVLDEHRSSFLELQEKHGVE 70
L+PAQLAA C +LVSEG+K R N S Y S V + + +++ R L LQ HGVE
Sbjct: 896 LEPAQLAAACGALVSEGMKTRNKSNTSMKYSESRGVRDWVIKMEDLREWVLRLQASHGVE 955
Query: 71 IPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQRL 130
IP LD F+G++EAWASG++W+E++ C +D+GD ARLLR+T+DL++QIP LP +D ++
Sbjct: 956 IPVLLDKSFAGILEAWASGVSWQELIEHCDMDEGDAARLLRKTLDLVSQIPYLPHIDPKI 1015
Query: 131 QKNAVDASNVMDRPPISEL 149
+ NA A MDR PISEL
Sbjct: 1016 ETNARAAQAAMDRSPISEL 1034
>gi|168047391|ref|XP_001776154.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162672529|gb|EDQ59065.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 1025
Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 79/152 (51%), Positives = 106/152 (69%), Gaps = 1/152 (0%)
Query: 1 MVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKN-NSYIYEPSTTVINVINVLDEHRSS 59
+V + IL + PAQLAA CA LVS+G+K R S IY+ S V ++E RS
Sbjct: 874 IVFTSGILNSIAPAQLAAACACLVSDGMKARSKDGPTSSIYDASDAVNEWAENMEEARSW 933
Query: 60 FLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQ 119
+ Q KHGV I ++++F+G+VEAWA+G+TW+E+M D +D+GD+ARLLRR+IDLLAQ
Sbjct: 934 LVRTQSKHGVAISVEINTEFAGLVEAWAAGVTWKELMDDIEMDEGDVARLLRRSIDLLAQ 993
Query: 120 IPKLPDVDQRLQKNAVDASNVMDRPPISELAG 151
IP LP +D L +A +ASN+MDRPPISEL G
Sbjct: 994 IPHLPHIDPNLAMSAREASNIMDRPPISELLG 1025
>gi|302768241|ref|XP_002967540.1| hypothetical protein SELMODRAFT_440019 [Selaginella moellendorffii]
gi|300164278|gb|EFJ30887.1| hypothetical protein SELMODRAFT_440019 [Selaginella moellendorffii]
Length = 1889
Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 77/153 (50%), Positives = 100/153 (65%), Gaps = 4/153 (2%)
Query: 1 MVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSY--IYEPSTTVINVINVLDEHRS 58
+ LR++ LL LKP++LAAV A+LV+E K +N Y IYEPS V + + R
Sbjct: 1738 IALRDEALLSLKPSELAAVAAALVTESPKS--IPDNEYRTIYEPSAVVKEWVEKMQSERL 1795
Query: 59 SFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLA 118
LQE H VE C LD Q +G VEAWA+G+ W+E+ ++ +D+GD ARLLRRTIDLL+
Sbjct: 1796 WLYGLQENHNVEFACDLDPQLAGFVEAWAAGVNWKELEIEDIMDEGDFARLLRRTIDLLS 1855
Query: 119 QIPKLPDVDQRLQKNAVDASNVMDRPPISELAG 151
QIP LP +D L K A +A+ MDRPPISE G
Sbjct: 1856 QIPHLPHIDSELSKIAKEAARNMDRPPISEPVG 1888
>gi|158337176|ref|YP_001518351.1| DEAD/DEAH box helicase [Acaryochloris marina MBIC11017]
gi|158307417|gb|ABW29034.1| DEAD/DEAH box-like helicase [Acaryochloris marina MBIC11017]
Length = 909
Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 57/147 (38%), Positives = 87/147 (59%), Gaps = 4/147 (2%)
Query: 4 RNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVINVLDEHRSSFLEL 63
+++ L L P LAAVCA+LV + + +W + PS TV + L R ++
Sbjct: 738 QSQALNTLDPHILAAVCAALVVDNTRPDVWLK----FRPSATVQQAVKPLRPIRRQLIQT 793
Query: 64 QEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKL 123
Q ++ P CLD+ G+VE WA G++W ++ +LD GDL R+LRRT+DLL+QIP +
Sbjct: 794 QHRYEAPFPVCLDTDLVGLVEQWALGISWSDLCDATSLDAGDLVRILRRTVDLLSQIPYV 853
Query: 124 PDVDQRLQKNAVDASNVMDRPPISELA 150
P + + L+KNA A M+R PIS+ +
Sbjct: 854 PYLSEELKKNARRAEQPMNRFPISDTS 880
>gi|359460541|ref|ZP_09249104.1| DEAD/DEAH box-like helicase [Acaryochloris sp. CCMEE 5410]
Length = 909
Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 56/145 (38%), Positives = 87/145 (60%), Gaps = 4/145 (2%)
Query: 4 RNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVINVLDEHRSSFLEL 63
+++ L L P LAAVCA+LV + + +W + PS V + L R ++
Sbjct: 738 QSQALNALDPHILAAVCAALVVDNTRPDVWLK----FRPSAAVQQAVKPLRPIRRQLIQT 793
Query: 64 QEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKL 123
Q ++ P CLD++ G+VE WA G++W ++ +LD GDL R+LRRT+DLL+QIP +
Sbjct: 794 QHRYDAPFPVCLDTELVGLVEQWALGISWNDLCDATSLDAGDLVRILRRTVDLLSQIPYV 853
Query: 124 PDVDQRLQKNAVDASNVMDRPPISE 148
P + + L+KNA A +M+R PIS+
Sbjct: 854 PYLSEELKKNARRAEQLMNRFPISD 878
>gi|443479093|ref|ZP_21068748.1| DSH domain protein [Pseudanabaena biceps PCC 7429]
gi|443015488|gb|ELS30416.1| DSH domain protein [Pseudanabaena biceps PCC 7429]
Length = 874
Score = 109 bits (272), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 55/140 (39%), Positives = 88/140 (62%), Gaps = 4/140 (2%)
Query: 10 DLKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVINVLDEHRSSFLELQEKHGV 69
+L P LA VCA++VSE + W + S TV + ++ L E R +++Q +H V
Sbjct: 738 NLSPHHLATVCAAIVSENSRPDNWIK----FGLSPTVEDALDGLREVRRQLMQVQRRHLV 793
Query: 70 EIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQR 129
+IP LD + +G+VE WA G+ W E+ + LD+GD+ RL+RRTIDLL QIP +P++
Sbjct: 794 DIPAWLDYELTGLVEQWALGMEWSELCQNTNLDEGDIVRLMRRTIDLLYQIPHVPNLPIH 853
Query: 130 LQKNAVDASNVMDRPPISEL 149
+ + A A+ ++DR P++E+
Sbjct: 854 VYQAAKQAAQLIDRFPVNEV 873
>gi|332707434|ref|ZP_08427483.1| Superfamily II RNA helicase [Moorea producens 3L]
gi|332353785|gb|EGJ33276.1| Superfamily II RNA helicase [Moorea producens 3L]
Length = 920
Score = 108 bits (270), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 51/139 (36%), Positives = 88/139 (63%), Gaps = 4/139 (2%)
Query: 10 DLKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVINVLDEHRSSFLELQEKHGV 69
DL P QLAA C+++V+E + W N Y+PS V+ + L R +LQ ++ V
Sbjct: 783 DLDPHQLAAACSAIVTETPRPDSWTN----YKPSEEVLEALGNLRRIRRQVFQLQRRYHV 838
Query: 70 EIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQR 129
+P + + G++E W+ G +WRE+ + +LD+GD+ R+LRRT+D+L+QIP + + +
Sbjct: 839 ALPVWSEDRLIGLIEQWSLGKSWRELCGNSSLDEGDVVRILRRTLDILSQIPHVLPLPES 898
Query: 130 LQKNAVDASNVMDRPPISE 148
L+ NA+ A+ ++DR P++E
Sbjct: 899 LKANAIRAAQLLDRFPVNE 917
>gi|254413640|ref|ZP_05027410.1| DSHCT domain family [Coleofasciculus chthonoplastes PCC 7420]
gi|196179747|gb|EDX74741.1| DSHCT domain family [Coleofasciculus chthonoplastes PCC 7420]
Length = 884
Score = 108 bits (270), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 54/140 (38%), Positives = 83/140 (59%), Gaps = 4/140 (2%)
Query: 11 LKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVINVLDEHRSSFLELQEKHGVE 70
L P LAA +LV+E + W N Y PS V+ ++ L + R +Q ++ V
Sbjct: 749 LDPHHLAACACALVTETPRPDSWTN----YPPSEPVLAPLDSLRQTRHQLFRVQRRYQVA 804
Query: 71 IPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQRL 130
+P L+ G+VE WA G+ W E+ D +LD+GD+ RLLRRT+D L+QIP +P + L
Sbjct: 805 LPIWLERDLIGLVEQWALGVEWTELCADTSLDEGDIVRLLRRTVDFLSQIPHVPFLSDGL 864
Query: 131 QKNAVDASNVMDRPPISELA 150
++NA+ A ++DR P++EL
Sbjct: 865 KRNAIRAIQLLDRFPVNELG 884
>gi|124026572|ref|YP_001015687.1| DNA helicase [Prochlorococcus marinus str. NATL1A]
gi|123961640|gb|ABM76423.1| putative DNA helicase [Prochlorococcus marinus str. NATL1A]
Length = 927
Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 57/148 (38%), Positives = 85/148 (57%), Gaps = 4/148 (2%)
Query: 1 MVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVINVLDEHRSSF 60
+VL + L +L P +LA V S+ +E + LW + PS N L R
Sbjct: 759 LVLMSGHLDELTPTELAGVVQSIATEVNRPDLWSG----FIPSAVADEAFNDLSNIRREL 814
Query: 61 LELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQI 120
+QE+ G+EIP S+ G+VEAWA G +W +++ + +LD+GD+ R+LRRT DLL+QI
Sbjct: 815 FRVQERFGIEIPILWSSELMGLVEAWARGSSWTDLISNTSLDEGDVVRILRRTNDLLSQI 874
Query: 121 PKLPDVDQRLQKNAVDASNVMDRPPISE 148
P V ++L+ NA A +MDR P+ E
Sbjct: 875 PYCESVSRQLRNNAKAAMKLMDRFPVRE 902
>gi|72382836|ref|YP_292191.1| helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
[Prochlorococcus marinus str. NATL2A]
gi|72002686|gb|AAZ58488.1| helicase, C-terminal protein:DEAD/DEAH box helicase, N-terminal
protein [Prochlorococcus marinus str. NATL2A]
Length = 927
Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 57/148 (38%), Positives = 85/148 (57%), Gaps = 4/148 (2%)
Query: 1 MVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVINVLDEHRSSF 60
+VL + L +L P +LA V S+ +E + LW + PS N L R
Sbjct: 759 LVLMSGHLDELTPTELAGVVQSIATEVNRPDLWSG----FIPSAVADEAFNDLSNIRREL 814
Query: 61 LELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQI 120
+QE+ G+EIP S+ G+VEAWA G +W +++ + +LD+GD+ R+LRRT DLL+QI
Sbjct: 815 FRVQERFGIEIPILWSSELMGLVEAWARGSSWTDLISNTSLDEGDVVRILRRTNDLLSQI 874
Query: 121 PKLPDVDQRLQKNAVDASNVMDRPPISE 148
P V ++L+ NA A +MDR P+ E
Sbjct: 875 PYCESVSRQLRNNAKAAMKLMDRFPVRE 902
>gi|428219595|ref|YP_007104060.1| DSH domain-containing protein [Pseudanabaena sp. PCC 7367]
gi|427991377|gb|AFY71632.1| DSH domain protein [Pseudanabaena sp. PCC 7367]
Length = 906
Score = 106 bits (264), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 57/149 (38%), Positives = 86/149 (57%), Gaps = 4/149 (2%)
Query: 1 MVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVINVLDEHRSSF 60
+ +R+ L +L P LA VCA+LV+E + W N S TV + L + R
Sbjct: 761 LAMRSGELDELDPHHLATVCAALVTENSRSDTWVNLGI----SPTVEEALTELHDIRRQL 816
Query: 61 LELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQI 120
+Q K V IP LD G++E WA G+ W E+ +LD+GD+ R+ RRT+DLL+QI
Sbjct: 817 FRMQRKQMVAIPIWLDYDLVGLIEQWALGMEWTELCSHTSLDEGDVVRIARRTLDLLSQI 876
Query: 121 PKLPDVDQRLQKNAVDASNVMDRPPISEL 149
P +P + L+++A A+ ++DR PISE+
Sbjct: 877 PHVPFLPNSLKQSAKQAAQLIDRFPISEV 905
>gi|307109951|gb|EFN58188.1| hypothetical protein CHLNCDRAFT_142028 [Chlorella variabilis]
Length = 1267
Score = 105 bits (263), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 58/151 (38%), Positives = 88/151 (58%), Gaps = 6/151 (3%)
Query: 1 MVLRNKILLDLKPAQLAAVCASLVSEGIKVR--LWKNNSYIYEPSTTVINVINVLDEHRS 58
+VL + L L P QLA ++++S R +W Y + V + +++ R
Sbjct: 1119 LVLTHDALQALPPPQLAGALSAVISAECVSRPTVWA----AYSATEGVTAAVAAVEDARQ 1174
Query: 59 SFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLA 118
LQ +HGV+ P +D + +G+VEAWA+G +W ++M DC+LDDGD+ARLL RT+DLL
Sbjct: 1175 RLAGLQVRHGVDAPISVDLRLAGLVEAWAAGCSWEQVMQDCSLDDGDVARLLTRTVDLLR 1234
Query: 119 QIPKLPDVDQRLQKNAVDASNVMDRPPISEL 149
Q+ + L+K+A A MDR PIS+L
Sbjct: 1235 QVAHCDTLLPPLRKSARQAMAAMDRKPISDL 1265
>gi|434387310|ref|YP_007097921.1| superfamily II RNA helicase [Chamaesiphon minutus PCC 6605]
gi|428018300|gb|AFY94394.1| superfamily II RNA helicase [Chamaesiphon minutus PCC 6605]
Length = 888
Score = 105 bits (261), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 55/148 (37%), Positives = 86/148 (58%), Gaps = 4/148 (2%)
Query: 1 MVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVINVLDEHRSSF 60
+ L + L L P LAAV +LVSE + W N Y+P+ V+ ++ L R
Sbjct: 742 LALMSGYLDTLDPHHLAAVICALVSETPRSDSWTN----YDPADEVVMTLSALRGSRRQL 797
Query: 61 LELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQI 120
++Q ++ V +P ++ + G+VE WA ++W E+ + LD+GD+ R+LRRT+DLL+QI
Sbjct: 798 FQIQRRYQVALPVWMEYELVGIVENWALEVSWTELCSNTNLDEGDIVRMLRRTVDLLSQI 857
Query: 121 PKLPDVDQRLQKNAVDASNVMDRPPISE 148
P +P LQ NA A ++DR PI+E
Sbjct: 858 PYVPHASDALQANARRAIQLIDRFPINE 885
>gi|428303828|ref|YP_007140653.1| DSH domain-containing protein [Crinalium epipsammum PCC 9333]
gi|428245363|gb|AFZ11143.1| DSH domain protein [Crinalium epipsammum PCC 9333]
Length = 896
Score = 105 bits (261), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 88/149 (59%), Gaps = 4/149 (2%)
Query: 1 MVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVINVLDEHRSSF 60
+ + + L +L P LAA +LV+E + W N S + + V NV R
Sbjct: 748 LAITSGALDELDPHHLAAAVCALVTETARPDSWTNYSLSNQAVEALTEVRNV----RRQL 803
Query: 61 LELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQI 120
+LQ ++ V +P L+ + G+VE WA G+ W ++ + LD+GD+ R+LRRT+DLL+QI
Sbjct: 804 FQLQRRYQVTLPVWLEYELVGIVEQWALGVEWFDLCGNTNLDEGDIVRMLRRTVDLLSQI 863
Query: 121 PKLPDVDQRLQKNAVDASNVMDRPPISEL 149
P +P + + LQ+NA+ A ++DR P++E+
Sbjct: 864 PHVPHISRSLQRNAIRAIQLIDRFPVNEV 892
>gi|428213983|ref|YP_007087127.1| superfamily II RNA helicase [Oscillatoria acuminata PCC 6304]
gi|428002364|gb|AFY83207.1| superfamily II RNA helicase [Oscillatoria acuminata PCC 6304]
Length = 900
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 52/138 (37%), Positives = 81/138 (58%), Gaps = 4/138 (2%)
Query: 11 LKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVINVLDEHRSSFLELQEKHGVE 70
L+P Q A CA+LV+E + W N Y S V ++ L R +LQ +H V
Sbjct: 764 LEPHQFACACAALVTEVSRPDNWTN----YNLSREVDGALSQLQGERRKLFQLQHRHRVT 819
Query: 71 IPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQRL 130
+P L+ Q +VE WA G+ W E+ + +LD+GD+ R+LRRT+D L+QIP +P + + L
Sbjct: 820 LPIWLERQLIAIVEEWALGVEWTELCANTSLDEGDIVRMLRRTLDFLSQIPYVPHISEGL 879
Query: 131 QKNAVDASNVMDRPPISE 148
+ NA A +++R P++E
Sbjct: 880 KVNAYRAIQLINRFPVNE 897
>gi|113476965|ref|YP_723026.1| DSH-like [Trichodesmium erythraeum IMS101]
gi|110168013|gb|ABG52553.1| DSH-like [Trichodesmium erythraeum IMS101]
Length = 905
Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 84/149 (56%), Gaps = 4/149 (2%)
Query: 1 MVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVINVLDEHRSSF 60
+VL + +L P LA CA LV+E + W YE S V + L R
Sbjct: 757 LVLMSGSFDELDPHHLATACAGLVTEITRPDSWTR----YELSVEVKEAMASLRNLRHQL 812
Query: 61 LELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQI 120
++Q +H V +P L+ +VE WA G+ W E++ + +LD+GD+ R+LRRT+D L+QI
Sbjct: 813 FQVQHRHQVALPVWLERDLIALVEQWALGVEWEELVNNASLDEGDVVRMLRRTLDFLSQI 872
Query: 121 PKLPDVDQRLQKNAVDASNVMDRPPISEL 149
P +P + L++NA A ++DR P++E+
Sbjct: 873 PHVPCLSDALRRNAHRAMQLIDRFPVNEV 901
>gi|220909112|ref|YP_002484423.1| DSH domain-containing protein [Cyanothece sp. PCC 7425]
gi|219865723|gb|ACL46062.1| DSH domain protein [Cyanothece sp. PCC 7425]
Length = 889
Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats.
Identities = 51/140 (36%), Positives = 81/140 (57%), Gaps = 6/140 (4%)
Query: 11 LKPAQLAAVCASLVSEGIKVRLWKNNSYI-YEPSTTVINVINVLDEHRSSFLELQEKHGV 69
L P AA CA+LV+E + ++SY YEP+ V + L R + Q ++ V
Sbjct: 751 LDPHHFAAACAALVTETPR-----SDSYTSYEPADAVDAALMALRPLRRQLFQAQRRYQV 805
Query: 70 EIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQR 129
+P L+ + G+VE WA G W E+ LD+GD+ RLLRRT+D L+Q+P P +
Sbjct: 806 VLPVWLEPELVGLVEQWALGTEWSELCTHTNLDEGDIVRLLRRTLDFLSQLPHAPQISPE 865
Query: 130 LQKNAVDASNVMDRPPISEL 149
L++NA+ A ++DR P++++
Sbjct: 866 LRQNALRAHQLLDRFPVNDI 885
>gi|428224981|ref|YP_007109078.1| DSH domain-containing protein [Geitlerinema sp. PCC 7407]
gi|427984882|gb|AFY66026.1| DSH domain protein [Geitlerinema sp. PCC 7407]
Length = 930
Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 51/138 (36%), Positives = 80/138 (57%), Gaps = 4/138 (2%)
Query: 11 LKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVINVLDEHRSSFLELQEKHGVE 70
L+P AA CA+LV+E + +W Y S V +N L R +LQ +H V
Sbjct: 794 LQPHHFAAACAALVTEVSRPDIWTR----YTSSPEVDEALNDLRGLRRQLFQLQRRHQVA 849
Query: 71 IPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQRL 130
+P L+ F +VE WA W E+ + +LD+GD+ R+LRRT+D L+Q+P +P + + +
Sbjct: 850 MPIWLEEDFISLVEQWALEADWVELCNNTSLDEGDVVRVLRRTLDFLSQLPHVPHLPEAM 909
Query: 131 QKNAVDASNVMDRPPISE 148
++NA A ++DR P+SE
Sbjct: 910 RRNAYQAIRLIDRFPVSE 927
>gi|427739317|ref|YP_007058861.1| superfamily II RNA helicase [Rivularia sp. PCC 7116]
gi|427374358|gb|AFY58314.1| superfamily II RNA helicase [Rivularia sp. PCC 7116]
Length = 889
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 52/149 (34%), Positives = 89/149 (59%), Gaps = 4/149 (2%)
Query: 1 MVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVINVLDEHRSSF 60
+VL + L L P A A+LV+E + ++ +E S+ V + + L R
Sbjct: 743 LVLNSGNLDGLAPHHFATAVAALVTETSR----PDSRVFFELSSEVADALASLRPIRRKV 798
Query: 61 LELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQI 120
+LQ ++GV +P L+ + +VE WA G+ W E+ + LD+GD+ R+LRRT+DLL+QI
Sbjct: 799 FQLQRRYGVALPVWLEFELITLVEQWALGMDWVEICENTTLDEGDVVRILRRTLDLLSQI 858
Query: 121 PKLPDVDQRLQKNAVDASNVMDRPPISEL 149
P +P + Q +++NA A+ ++DR P++E+
Sbjct: 859 PHVPHLPQEIKRNAQRATQLIDRFPVNEV 887
>gi|308808266|ref|XP_003081443.1| DNA polymerase theta/eta, DEAD-box superfamily (ISS) [Ostreococcus
tauri]
gi|116059906|emb|CAL55965.1| DNA polymerase theta/eta, DEAD-box superfamily (ISS) [Ostreococcus
tauri]
Length = 1096
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 87/150 (58%), Gaps = 6/150 (4%)
Query: 1 MVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVINVLDEHRSSF 60
M + + ++ +L A LA +L + + + Y PS ++ I ++
Sbjct: 953 MAMSSPLVAELDVATLAGFAGALCMDN------RPATCFYNPSQNLVEAIEHVEPAMGDL 1006
Query: 61 LELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQI 120
LQ V++P L + + +VE+WASG +W ++ D +LD+GD+ARL RRT +LLAQI
Sbjct: 1007 QYLQSTTRVDVPISLSYEVAALVESWASGTSWDQIRNDTSLDEGDIARLFRRTAELLAQI 1066
Query: 121 PKLPDVDQRLQKNAVDASNVMDRPPISELA 150
P++P + Q L+ A A++V++RPPIS+L+
Sbjct: 1067 PRVPHLPQNLKTTAKKANDVVNRPPISDLS 1096
>gi|209524293|ref|ZP_03272843.1| DSH domain protein [Arthrospira maxima CS-328]
gi|376003489|ref|ZP_09781299.1| putative helicase [Arthrospira sp. PCC 8005]
gi|423066797|ref|ZP_17055587.1| DSH domain protein [Arthrospira platensis C1]
gi|209495384|gb|EDZ95689.1| DSH domain protein [Arthrospira maxima CS-328]
gi|375328146|emb|CCE17052.1| putative helicase [Arthrospira sp. PCC 8005]
gi|406711822|gb|EKD07021.1| DSH domain protein [Arthrospira platensis C1]
Length = 904
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 54/152 (35%), Positives = 91/152 (59%), Gaps = 8/152 (5%)
Query: 1 MVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVINVLDEHRSSF 60
+VL + +L+P LA C++LV+E + W + Y+ S V +N L R S
Sbjct: 754 LVLMSGEFDNLEPYNLAGACSALVTEVSRSDSWTH----YQLSEVVQETLNRLWSLRRSL 809
Query: 61 LELQEKHGVE---IPCCLDSQ-FSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDL 116
+++Q +H VE +P + Q S ++E WA G+ W E++ + LD+GD+ R++RRT D
Sbjct: 810 IKVQGRHHVEFLVLPERREHQRLSAILEQWAGGVEWAELVKNTTLDEGDIVRIIRRTRDF 869
Query: 117 LAQIPKLPDVDQRLQKNAVDASNVMDRPPISE 148
L+QIP +P + L+ NA++A N++DR P++E
Sbjct: 870 LSQIPHVPHLSSTLKDNAIEAKNLIDRFPVNE 901
>gi|291571682|dbj|BAI93954.1| putative helicase [Arthrospira platensis NIES-39]
Length = 904
Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 54/152 (35%), Positives = 91/152 (59%), Gaps = 8/152 (5%)
Query: 1 MVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVINVLDEHRSSF 60
+VL + +L+P LA C++LV+E + W + Y+ S V +N L R S
Sbjct: 754 LVLMSGEFDNLEPYNLAGACSALVTEVSRSDSWTH----YQLSEVVQETLNRLWSLRRSL 809
Query: 61 LELQEKHGVE---IPCCLDSQ-FSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDL 116
+++Q +H VE +P + Q S ++E WA G+ W E++ + LD+GD+ R++RRT D
Sbjct: 810 IKVQGRHRVEFLVLPERREHQRLSAILEQWAGGVEWAELVKNTTLDEGDIVRIIRRTRDF 869
Query: 117 LAQIPKLPDVDQRLQKNAVDASNVMDRPPISE 148
L+QIP +P + L+ NA++A N++DR P++E
Sbjct: 870 LSQIPHVPHLSSTLKDNAIEAKNLIDRFPVNE 901
>gi|428221054|ref|YP_007105224.1| superfamily II RNA helicase [Synechococcus sp. PCC 7502]
gi|427994394|gb|AFY73089.1| superfamily II RNA helicase [Synechococcus sp. PCC 7502]
Length = 877
Score = 99.4 bits (246), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 85/140 (60%), Gaps = 4/140 (2%)
Query: 10 DLKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVINVLDEHRSSFLELQEKHGV 69
+L P LA CA+LV+E + ++ + S V ++ L R ++Q++H V
Sbjct: 741 NLDPHHLATACAALVTENSR----PDSRVNFTISPLVEESLSGLRGLRRQLFQIQKRHNV 796
Query: 70 EIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQR 129
IP L+ G++E WA G++W E+ + +LD+GD+ R+ RRT+DLL+QIP +P + +
Sbjct: 797 AIPIWLEYDLVGLIEQWALGMSWTELCANTSLDEGDIVRIARRTLDLLSQIPHIPHLPET 856
Query: 130 LQKNAVDASNVMDRPPISEL 149
+++NA A ++DR P++E+
Sbjct: 857 IRQNAYRAMQLIDRFPVNEV 876
>gi|409993430|ref|ZP_11276571.1| DSH-like protein [Arthrospira platensis str. Paraca]
gi|409935699|gb|EKN77222.1| DSH-like protein [Arthrospira platensis str. Paraca]
Length = 912
Score = 99.4 bits (246), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 54/152 (35%), Positives = 91/152 (59%), Gaps = 8/152 (5%)
Query: 1 MVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVINVLDEHRSSF 60
+VL + +L+P LA C++LV+E + W + Y+ S V +N L R S
Sbjct: 762 LVLMSGEFDNLEPYNLAGACSALVTEVSRSDSWTH----YQLSEVVQETLNRLWSLRRSL 817
Query: 61 LELQEKHGVE---IPCCLDSQ-FSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDL 116
+++Q +H VE +P + Q S ++E WA G+ W E++ + LD+GD+ R++RRT D
Sbjct: 818 IKVQGRHRVEFLVLPERREHQRLSAILEQWAGGVEWAELVKNTTLDEGDIVRIIRRTRDF 877
Query: 117 LAQIPKLPDVDQRLQKNAVDASNVMDRPPISE 148
L+QIP +P + L+ NA++A N++DR P++E
Sbjct: 878 LSQIPHVPHLSSTLKDNAIEAKNLIDRFPVNE 909
>gi|88807355|ref|ZP_01122867.1| putative DNA helicase [Synechococcus sp. WH 7805]
gi|88788569|gb|EAR19724.1| putative DNA helicase [Synechococcus sp. WH 7805]
Length = 924
Score = 99.0 bits (245), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 87/148 (58%), Gaps = 4/148 (2%)
Query: 1 MVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVINVLDEHRSSF 60
+ L + L DL PA+LAAV ++ +E + LW + P ++ L R
Sbjct: 758 LALMSGHLDDLPPAELAAVFEAISTEVNRPDLWSG----FPPPPRAEEALHDLSGIRREL 813
Query: 61 LELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQI 120
L +QE+H V +P + + G+VEAWA G+ W +++ + +LD+GD+ R++RRTIDLLAQ+
Sbjct: 814 LRVQERHQVVVPAWWEPELMGLVEAWARGVAWNDLIANTSLDEGDVVRIMRRTIDLLAQV 873
Query: 121 PKLPDVDQRLQKNAVDASNVMDRPPISE 148
P + ++L+ +A A ++R P++E
Sbjct: 874 PYCEAISEQLRSHARQALKAINRFPVAE 901
>gi|428204590|ref|YP_007083179.1| superfamily II RNA helicase [Pleurocapsa sp. PCC 7327]
gi|427982022|gb|AFY79622.1| superfamily II RNA helicase [Pleurocapsa sp. PCC 7327]
Length = 987
Score = 99.0 bits (245), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 54/143 (37%), Positives = 81/143 (56%), Gaps = 11/143 (7%)
Query: 11 LKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVINV-------LDEHRSSFLEL 63
L+P QLAA ++L++E ++ W N Y PS V+ L E R +
Sbjct: 849 LEPHQLAAAMSALITEPLRPDTWTN----YPPSQEVLEAFRKTESQEIGLREIRRQLYQA 904
Query: 64 QEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKL 123
Q ++ + IP LD+Q G++E W G+ W E+ + +LD+GD+ RLLRRTIDLL QIP++
Sbjct: 905 QARYDIAIPVWLDTQLMGLIEQWVLGIDWNELCDNTSLDEGDIVRLLRRTIDLLWQIPQI 964
Query: 124 PDVDQRLQKNAVDASNVMDRPPI 146
P V L+ A A ++M R P+
Sbjct: 965 PGVPISLKSQARVAVSMMKRFPV 987
>gi|33241070|ref|NP_876012.1| superfamily II RNA helicase [Prochlorococcus marinus subsp. marinus
str. CCMP1375]
gi|33238599|gb|AAQ00665.1| Superfamily II RNA helicase [Prochlorococcus marinus subsp. marinus
str. CCMP1375]
Length = 925
Score = 98.6 bits (244), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 50/139 (35%), Positives = 84/139 (60%), Gaps = 4/139 (2%)
Query: 10 DLKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVINVLDEHRSSFLELQEKHGV 69
+L P+ LAAV ++ +E + LW + PS + +N L R L QE+ +
Sbjct: 764 ELSPSSLAAVLQAISTETNRHDLWSG----FSPSPESMEALNDLSGIRRELLRSQEQLKL 819
Query: 70 EIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQR 129
EIP + + G+VE WA+G+TW +++ + +LD+GD+ R++RRTIDLLAQ+P + ++
Sbjct: 820 EIPVWSEPELMGLVEKWANGITWSDLIANTSLDEGDVVRIMRRTIDLLAQLPYCVAISKQ 879
Query: 130 LQKNAVDASNVMDRPPISE 148
L++NA A ++R P+ E
Sbjct: 880 LKRNAAIALKGLNRFPVRE 898
>gi|157414068|ref|YP_001484934.1| putative DNA helicase [Prochlorococcus marinus str. MIT 9215]
gi|157388643|gb|ABV51348.1| putative DNA helicase [Prochlorococcus marinus str. MIT 9215]
Length = 908
Score = 98.2 bits (243), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 88/148 (59%), Gaps = 4/148 (2%)
Query: 1 MVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVINVLDEHRSSF 60
+VL + L DL P +LAA+ ++ + + LW N ++PS VI+V N LD R
Sbjct: 743 LVLVSGYLDDLDPPELAAIIQAICVDIRRPNLWCN----FKPSIKVIDVFNELDGLRKLV 798
Query: 61 LELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQI 120
Q K +EIP L+++ +G++ WA G W++++ + +LD+GD+ R++RR+ID+L+Q+
Sbjct: 799 ASQQNKFHIEIPIYLETELTGIISEWARGKKWKDLVFNTSLDEGDVVRIIRRSIDVLSQV 858
Query: 121 PKLPDVDQRLQKNAVDASNVMDRPPISE 148
V +L+ A A ++R P+SE
Sbjct: 859 QYCIGVSNKLKSKAKLALKAINRFPVSE 886
>gi|148240376|ref|YP_001225763.1| superfamily II RNA helicase [Synechococcus sp. WH 7803]
gi|147848915|emb|CAK24466.1| Superfamily II RNA helicase [Synechococcus sp. WH 7803]
Length = 924
Score = 98.2 bits (243), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 86/148 (58%), Gaps = 4/148 (2%)
Query: 1 MVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVINVLDEHRSSF 60
+ L + L DL PA+LAAV ++ +E + LW + P ++ L R
Sbjct: 758 LALMSGHLDDLPPAELAAVFEAISTEVNRPDLWSG----FPPPPRAEEALHDLSGLRREL 813
Query: 61 LELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQI 120
L QE+H V +P + + G+VEAWA G+ W +++ + +LD+GD+ R++RRTIDLLAQ+
Sbjct: 814 LRAQERHQVVVPAWWEPELMGLVEAWARGVAWNDLIANTSLDEGDVVRIMRRTIDLLAQV 873
Query: 121 PKLPDVDQRLQKNAVDASNVMDRPPISE 148
P + ++L+ +A A ++R P++E
Sbjct: 874 PYCEAISEQLRSHARQALKAINRFPVAE 901
>gi|91070166|gb|ABE11087.1| putative DNA helicase [uncultured Prochlorococcus marinus clone
HF10-11D6]
Length = 908
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 88/148 (59%), Gaps = 4/148 (2%)
Query: 1 MVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVINVLDEHRSSF 60
+VL + L DL P +LAA+ ++ + + LW N ++PS VI+V N LD R
Sbjct: 743 LVLVSGYLDDLDPPELAAIIQAICVDIRRPNLWCN----FKPSLKVIDVFNELDGLRKLV 798
Query: 61 LELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQI 120
Q K +EIP L+++ +G++ WA G W++++ + +LD+GD+ R++RR+ID+L+Q+
Sbjct: 799 ASQQNKFHIEIPIYLETELTGIISEWARGKKWKDLVFNTSLDEGDVVRIIRRSIDVLSQV 858
Query: 121 PKLPDVDQRLQKNAVDASNVMDRPPISE 148
V +L+ A A ++R P+SE
Sbjct: 859 QYCIGVSNKLKSKAKLALKAINRFPVSE 886
>gi|427730604|ref|YP_007076841.1| superfamily II RNA helicase [Nostoc sp. PCC 7524]
gi|427366523|gb|AFY49244.1| superfamily II RNA helicase [Nostoc sp. PCC 7524]
Length = 893
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 55/152 (36%), Positives = 93/152 (61%), Gaps = 7/152 (4%)
Query: 1 MVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVINVLDEHRSSF 60
+ L + L +L P LAAV A+LV+E + ++ + S + + L + R +
Sbjct: 744 LALASGELNNLDPQHLAAVIAALVTETPR----PDSRVNFNLSPEIDEAWSRLQKIRRAV 799
Query: 61 LELQEKHGVEIPCCLDSQFSGM---VEAWASGLTWREMMMDCALDDGDLARLLRRTIDLL 117
L++Q +HGV +P L++++ G+ VE WA G W E+ + LD+GD+ R+LRRT+DLL
Sbjct: 800 LKVQYRHGVALPVGLENRYIGLIAIVEQWALGTEWVELCENTTLDEGDVVRILRRTLDLL 859
Query: 118 AQIPKLPDVDQRLQKNAVDASNVMDRPPISEL 149
+QIP +P++ LQ+NA A ++DR P++E+
Sbjct: 860 SQIPHVPNLPDALQRNAYRAMQLIDRFPVNEV 891
>gi|411120335|ref|ZP_11392709.1| superfamily II RNA helicase [Oscillatoriales cyanobacterium JSC-12]
gi|410709716|gb|EKQ67229.1| superfamily II RNA helicase [Oscillatoriales cyanobacterium JSC-12]
Length = 898
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 50/138 (36%), Positives = 80/138 (57%), Gaps = 4/138 (2%)
Query: 10 DLKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVINVLDEHRSSFLELQEKHGV 69
DL+P AA CA+LV+E + W Y+ + V + L R S +LQ ++ V
Sbjct: 761 DLEPHHFAAACAALVTEVSRPDSWTR----YDLPSPVEEALGGLRGIRHSLFKLQRRYQV 816
Query: 70 EIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQR 129
+P L+ F G+VE WA G W + + +LD+GD+ R+LRRT+D L+QIP +P +
Sbjct: 817 VLPIWLEYDFVGLVEQWALGSDWLALCENTSLDEGDIVRVLRRTLDFLSQIPHVPHLSDS 876
Query: 130 LQKNAVDASNVMDRPPIS 147
L++ ++ A ++DR P+S
Sbjct: 877 LKQKSIQAIQLIDRFPVS 894
>gi|300864714|ref|ZP_07109568.1| DSH-like [Oscillatoria sp. PCC 6506]
gi|300337280|emb|CBN54716.1| DSH-like [Oscillatoria sp. PCC 6506]
Length = 899
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 50/140 (35%), Positives = 82/140 (58%), Gaps = 5/140 (3%)
Query: 10 DLKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVINVLDEH-RSSFLELQEKHG 68
+L P LAA CA LV+E + W Y S V+ ++ L R ++Q +H
Sbjct: 761 ELDPHHLAAACAGLVTEVSRPDSWTR----YTLSPEVLEALDNLQRGLRRRVFQVQHRHD 816
Query: 69 VEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQ 128
V IP L+ + +VE WA G+ W +++ + +LD+GD+ R+LRRT+D L+Q+P +P + +
Sbjct: 817 VAIPIWLEREIITLVEQWALGVEWLDIVANTSLDEGDVVRILRRTLDFLSQVPHVPYISE 876
Query: 129 RLQKNAVDASNVMDRPPISE 148
L+ NA A ++DR P++E
Sbjct: 877 SLRSNAYRAMQLIDRFPVNE 896
>gi|126696995|ref|YP_001091881.1| DNA helicase [Prochlorococcus marinus str. MIT 9301]
gi|126544038|gb|ABO18280.1| putative DNA helicase [Prochlorococcus marinus str. MIT 9301]
Length = 908
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 87/148 (58%), Gaps = 4/148 (2%)
Query: 1 MVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVINVLDEHRSSF 60
+VL + L DL P LAA+ ++ + + LW N ++PS VI+V N LD R
Sbjct: 743 LVLFSGYLDDLDPPDLAAIIQAICVDVRRPNLWCN----FKPSLKVIDVFNELDGLRKLV 798
Query: 61 LELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQI 120
Q K +EIP L+++ +G++ WA G W++++ + +LD+GD+ R++RR+ID+L+Q+
Sbjct: 799 ASQQNKFHIEIPIYLETELTGIISEWARGKKWKDLVFNTSLDEGDVVRIIRRSIDVLSQV 858
Query: 121 PKLPDVDQRLQKNAVDASNVMDRPPISE 148
V +L+ A A ++R P+SE
Sbjct: 859 QYCIGVSNKLKSKAKLALKAINRFPVSE 886
>gi|75909112|ref|YP_323408.1| type III restriction enzyme, res subunit [Anabaena variabilis ATCC
29413]
gi|75702837|gb|ABA22513.1| Type III restriction enzyme, res subunit [Anabaena variabilis ATCC
29413]
Length = 893
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 94/152 (61%), Gaps = 7/152 (4%)
Query: 1 MVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVINVLDEHRSSF 60
+ L + L +L P LAA A+LV+E + ++ + S + + + L + R +
Sbjct: 744 LALASGELNNLDPHHLAATIAALVTETPR----PDSRVNFNLSPEIDDAWSRLQKTRRAV 799
Query: 61 LELQEKHGVEIPCCLDSQFSGM---VEAWASGLTWREMMMDCALDDGDLARLLRRTIDLL 117
L++Q +HGV +P L++++ G+ VE WA G+ W E+ + LD+GD+ R+LRR++DLL
Sbjct: 800 LKVQYRHGVALPVGLENRYIGLIALVEQWALGIEWVELCQNTTLDEGDVVRILRRSLDLL 859
Query: 118 AQIPKLPDVDQRLQKNAVDASNVMDRPPISEL 149
+QIP +P++ LQ+NA A ++DR P++E+
Sbjct: 860 SQIPHVPNLPDVLQRNAYRAMQLIDRFPVNEV 891
>gi|254525983|ref|ZP_05138035.1| DSHCT domain family protein [Prochlorococcus marinus str. MIT 9202]
gi|221537407|gb|EEE39860.1| DSHCT domain family protein [Prochlorococcus marinus str. MIT 9202]
Length = 908
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 88/148 (59%), Gaps = 4/148 (2%)
Query: 1 MVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVINVLDEHRSSF 60
+VL + L DL P +LAA+ ++ + + LW N ++PS VI+V N LD R
Sbjct: 743 LVLVSGYLDDLDPPELAAIIQAICVDVRRPNLWCN----FKPSVKVIDVFNELDGLRKLV 798
Query: 61 LELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQI 120
Q K +EIP L+++ +G++ WA G W++++ + +LD+GD+ R++RR+ID+L+Q+
Sbjct: 799 SFQQNKFHIEIPIYLETELTGIISEWARGKKWKDLVFNTSLDEGDVVRIIRRSIDVLSQV 858
Query: 121 PKLPDVDQRLQKNAVDASNVMDRPPISE 148
V +L+ A A ++R P+SE
Sbjct: 859 QYCIGVSNKLKSKAKLALKAINRFPVSE 886
>gi|17227985|ref|NP_484533.1| hypothetical protein alr0489 [Nostoc sp. PCC 7120]
gi|17129834|dbj|BAB72447.1| alr0489 [Nostoc sp. PCC 7120]
Length = 893
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 94/152 (61%), Gaps = 7/152 (4%)
Query: 1 MVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVINVLDEHRSSF 60
+ L + L +L P LAA A+LV+E + ++ + S + + + L + R +
Sbjct: 744 LALASGELNNLDPHHLAATIAALVTETPR----PDSRVNFNLSPEIDDAWSRLQKTRRAV 799
Query: 61 LELQEKHGVEIPCCLDSQFSGM---VEAWASGLTWREMMMDCALDDGDLARLLRRTIDLL 117
L++Q +HGV +P L++++ G+ VE WA G+ W E+ + LD+GD+ R+LRR++DLL
Sbjct: 800 LKVQYRHGVALPVGLENRYIGLIALVEQWALGIEWVELCQNTTLDEGDVVRILRRSLDLL 859
Query: 118 AQIPKLPDVDQRLQKNAVDASNVMDRPPISEL 149
+QIP +P++ LQ+NA A ++DR P++E+
Sbjct: 860 SQIPHVPNLPDVLQRNAYRAMQLIDRFPVNEV 891
>gi|78779944|ref|YP_398056.1| DEAD/DEAH box helicase-like [Prochlorococcus marinus str. MIT 9312]
gi|78713443|gb|ABB50620.1| DEAD/DEAH box helicase-like protein [Prochlorococcus marinus str.
MIT 9312]
Length = 908
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 88/148 (59%), Gaps = 4/148 (2%)
Query: 1 MVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVINVLDEHRSSF 60
+VL + L DL P +LAA+ ++ + + LW N ++PS V++V N LD R
Sbjct: 743 LVLVSGYLDDLDPPELAAIIQAICVDVRRPNLWCN----FKPSLKVLDVFNELDGLRKLV 798
Query: 61 LELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQI 120
Q K +EIP L+ + +G++ AWA G W++++ + +LD+GD+ R++RR+ID+L+Q+
Sbjct: 799 ASQQNKFHIEIPIYLEIELTGIISAWARGEKWKDLVFNTSLDEGDVVRIIRRSIDVLSQV 858
Query: 121 PKLPDVDQRLQKNAVDASNVMDRPPISE 148
V +L+ A A ++R P+SE
Sbjct: 859 QYCIGVSNKLKSKAKLALKAINRFPVSE 886
>gi|123969201|ref|YP_001010059.1| DNA helicase [Prochlorococcus marinus str. AS9601]
gi|123199311|gb|ABM70952.1| putative DNA helicase [Prochlorococcus marinus str. AS9601]
Length = 908
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 88/148 (59%), Gaps = 4/148 (2%)
Query: 1 MVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVINVLDEHRSSF 60
+VL + L DL P +LAA+ ++ + + LW N ++PS VI+V N LD R
Sbjct: 743 LVLVSGYLDDLDPPELAAIIQAICVDVRRPNLWCN----FKPSLKVIDVFNELDGLRKLV 798
Query: 61 LELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQI 120
Q K +EIP L+++ +G++ WA G W++++ + +LD+GD+ R++RR+ID+L+Q+
Sbjct: 799 SFQQNKFHIEIPIYLETELTGIISEWARGKKWKDLVFNTSLDEGDVVRIIRRSIDVLSQV 858
Query: 121 PKLPDVDQRLQKNAVDASNVMDRPPISE 148
V +L+ A A ++R P+SE
Sbjct: 859 QYCIGVSNKLKSKAKLALKAINRFPVSE 886
>gi|126660004|ref|ZP_01731126.1| antiviral protein [Cyanothece sp. CCY0110]
gi|126618682|gb|EAZ89429.1| antiviral protein [Cyanothece sp. CCY0110]
Length = 970
Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 56/153 (36%), Positives = 85/153 (55%), Gaps = 11/153 (7%)
Query: 1 MVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVINVLDEHRSSF 60
+V + IL L+P QLAA +++++E ++ W N Y PS V+ + E S
Sbjct: 822 LVFMSGILNHLEPHQLAAAVSAIITETLRPDTWTN----YLPSPEVLKLFRESPEQGVSI 877
Query: 61 LEL-------QEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRT 113
E+ Q ++ + IP L+ + G+VE WA G W+E+ + +LD+GDL RLLRRT
Sbjct: 878 GEMRRLLNQTQRRYQITIPVWLELELIGLVEQWALGGDWQELCENTSLDEGDLVRLLRRT 937
Query: 114 IDLLAQIPKLPDVDQRLQKNAVDASNVMDRPPI 146
IDLL QIP+ P + L A +A ++ R PI
Sbjct: 938 IDLLWQIPQTPGISNYLAGTAKEAIVLLKRFPI 970
>gi|390439559|ref|ZP_10227950.1| putative helicase [Microcystis sp. T1-4]
gi|389837048|emb|CCI32074.1| putative helicase [Microcystis sp. T1-4]
Length = 975
Score = 96.3 bits (238), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 52/143 (36%), Positives = 82/143 (57%), Gaps = 11/143 (7%)
Query: 11 LKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVINVLDEHRSSFLEL------- 63
L P+QLAA +++++E + W N Y P VI+++ +E+ E+
Sbjct: 837 LTPSQLAAAISAMITEPPRPDTWCN----YPPVPEVIDILRQGEENSPGLREVRRLLYQA 892
Query: 64 QEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKL 123
Q ++ + IP L++Q G+ WA G +W E+ + +LD+GDL RLLRRT+D+L QIP++
Sbjct: 893 QSRYDITIPVWLETQLMGIASRWAQGTSWPELCENTSLDEGDLVRLLRRTVDVLWQIPQI 952
Query: 124 PDVDQRLQKNAVDASNVMDRPPI 146
P V Q L+ NA A M R P+
Sbjct: 953 PRVSQVLKDNARLAVTAMKRFPL 975
>gi|425448713|ref|ZP_18828557.1| Similar to tr|Q4C8R2|Q4C8R2_CROWT Helicase [Microcystis aeruginosa
PCC 7941]
gi|389763993|emb|CCI09599.1| Similar to tr|Q4C8R2|Q4C8R2_CROWT Helicase [Microcystis aeruginosa
PCC 7941]
Length = 975
Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 53/143 (37%), Positives = 81/143 (56%), Gaps = 11/143 (7%)
Query: 11 LKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVINV-------LDEHRSSFLEL 63
L P+QLAA +++++E + W N Y P VI+++ L E R +
Sbjct: 837 LTPSQLAAAISAMITEPPRPDTWCN----YPPVPEVIDILRQGEGNSPGLREVRRLLYQA 892
Query: 64 QEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKL 123
Q ++ + IP L++Q G+ WA G +W E+ + +LD+GDL RLLRRT+D+L QIP++
Sbjct: 893 QSRYDITIPVWLETQLMGIASRWAQGTSWPELCENTSLDEGDLVRLLRRTVDVLWQIPQI 952
Query: 124 PDVDQRLQKNAVDASNVMDRPPI 146
P V Q L+ NA A M R P+
Sbjct: 953 PRVSQVLKDNARLAVTAMKRFPL 975
>gi|440754684|ref|ZP_20933886.1| DEAD-box ATP-dependent RNA helicase ISE2 [Microcystis aeruginosa
TAIHU98]
gi|440174890|gb|ELP54259.1| DEAD-box ATP-dependent RNA helicase ISE2 [Microcystis aeruginosa
TAIHU98]
Length = 975
Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 53/143 (37%), Positives = 81/143 (56%), Gaps = 11/143 (7%)
Query: 11 LKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVINV-------LDEHRSSFLEL 63
L P+QLAA +++++E + W N Y P VI+++ L E R +
Sbjct: 837 LTPSQLAAAISAMITEPPRPDTWCN----YPPVPEVIDILRQGEGNSPGLREVRRLLYQA 892
Query: 64 QEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKL 123
Q ++ + IP L++Q G+ WA G +W E+ + +LD+GDL RLLRRT+D+L QIP++
Sbjct: 893 QSRYDITIPVWLETQLMGIASRWAQGTSWPELCENTSLDEGDLVRLLRRTVDVLWQIPQI 952
Query: 124 PDVDQRLQKNAVDASNVMDRPPI 146
P V Q L+ NA A M R P+
Sbjct: 953 PRVSQVLKDNARLAVTAMKRFPL 975
>gi|425455182|ref|ZP_18834907.1| Similar to tr|Q4C8R2|Q4C8R2_CROWT Helicase [Microcystis aeruginosa
PCC 9807]
gi|389803963|emb|CCI17159.1| Similar to tr|Q4C8R2|Q4C8R2_CROWT Helicase [Microcystis aeruginosa
PCC 9807]
Length = 975
Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 53/143 (37%), Positives = 81/143 (56%), Gaps = 11/143 (7%)
Query: 11 LKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVINV-------LDEHRSSFLEL 63
L P+QLAA +++++E + W N Y P VI+++ L E R +
Sbjct: 837 LTPSQLAAAISAMITEPPRPDTWCN----YPPVPEVIDILRQGEGNSPGLREVRRLLYQA 892
Query: 64 QEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKL 123
Q ++ + IP L++Q G+ WA G +W E+ + +LD+GDL RLLRRT+D+L QIP++
Sbjct: 893 QSRYDITIPVWLETQLMGIASRWAQGTSWPELCENTSLDEGDLVRLLRRTVDVLWQIPQI 952
Query: 124 PDVDQRLQKNAVDASNVMDRPPI 146
P V Q L+ NA A M R P+
Sbjct: 953 PRVSQVLKDNARLAVTAMKRFPL 975
>gi|425470310|ref|ZP_18849180.1| putative helicase [Microcystis aeruginosa PCC 9701]
gi|389884126|emb|CCI35561.1| putative helicase [Microcystis aeruginosa PCC 9701]
Length = 975
Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 53/143 (37%), Positives = 81/143 (56%), Gaps = 11/143 (7%)
Query: 11 LKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVINV-------LDEHRSSFLEL 63
L P+QLAA +++++E + W N Y P VI+++ L E R +
Sbjct: 837 LTPSQLAAAISAMITEPPRPDTWCN----YPPVPEVIDILRQGEGNSPGLREVRRLLYQA 892
Query: 64 QEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKL 123
Q ++ + IP L++Q G+ WA G +W E+ + +LD+GDL RLLRRT+D+L QIP++
Sbjct: 893 QSRYDITIPVWLETQLMGIASRWAQGTSWPELCENTSLDEGDLVRLLRRTVDVLWQIPQI 952
Query: 124 PDVDQRLQKNAVDASNVMDRPPI 146
P V Q L+ NA A M R P+
Sbjct: 953 PRVSQVLKDNARLAVTAMKRFPL 975
>gi|425463422|ref|ZP_18842761.1| putative helicase [Microcystis aeruginosa PCC 9809]
gi|389833252|emb|CCI22398.1| putative helicase [Microcystis aeruginosa PCC 9809]
Length = 975
Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 53/143 (37%), Positives = 81/143 (56%), Gaps = 11/143 (7%)
Query: 11 LKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVINV-------LDEHRSSFLEL 63
L P+QLAA +++++E + W N Y P VI+++ L E R +
Sbjct: 837 LTPSQLAAAISAMITEPPRPDTWCN----YPPVPEVIDILRQGEGNSPGLREVRRLLYQA 892
Query: 64 QEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKL 123
Q ++ + IP L++Q G+ WA G +W E+ + +LD+GDL RLLRRT+D+L QIP++
Sbjct: 893 QSRYDITIPVWLETQLMGIASRWAQGTSWPELCENTSLDEGDLVRLLRRTVDVLWQIPQI 952
Query: 124 PDVDQRLQKNAVDASNVMDRPPI 146
P V Q L+ NA A M R P+
Sbjct: 953 PRVSQVLKDNARLAVTAMKRFPL 975
>gi|422304231|ref|ZP_16391578.1| putative helicase [Microcystis aeruginosa PCC 9806]
gi|389790698|emb|CCI13449.1| putative helicase [Microcystis aeruginosa PCC 9806]
Length = 975
Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 53/143 (37%), Positives = 81/143 (56%), Gaps = 11/143 (7%)
Query: 11 LKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVINV-------LDEHRSSFLEL 63
L P+QLAA +++++E + W N Y P VI+++ L E R +
Sbjct: 837 LTPSQLAAAISAMITEPPRPDTWCN----YPPVPEVIDILRQGEGNSPGLREVRRLLYQA 892
Query: 64 QEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKL 123
Q ++ + IP L++Q G+ WA G +W E+ + +LD+GDL RLLRRT+D+L QIP++
Sbjct: 893 QSRYDITIPVWLETQLMGIASRWAQGTSWPELCENTSLDEGDLVRLLRRTVDVLWQIPQI 952
Query: 124 PDVDQRLQKNAVDASNVMDRPPI 146
P V Q L+ NA A M R P+
Sbjct: 953 PRVSQVLKDNARLAVTAMKRFPL 975
>gi|425437614|ref|ZP_18818029.1| Similar to tr|Q4C8R2|Q4C8R2_CROWT Helicase [Microcystis aeruginosa
PCC 9432]
gi|389677388|emb|CCH93670.1| Similar to tr|Q4C8R2|Q4C8R2_CROWT Helicase [Microcystis aeruginosa
PCC 9432]
Length = 975
Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 53/143 (37%), Positives = 81/143 (56%), Gaps = 11/143 (7%)
Query: 11 LKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVINV-------LDEHRSSFLEL 63
L P+QLAA +++++E + W N Y P VI+++ L E R +
Sbjct: 837 LTPSQLAAAISAMITEPPRPDTWCN----YPPVPEVIDILRQGEGNSPGLREVRRLLYQA 892
Query: 64 QEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKL 123
Q ++ + IP L++Q G+ WA G +W E+ + +LD+GDL RLLRRT+D+L QIP++
Sbjct: 893 QSRYDITIPVWLETQLMGIASRWAQGTSWPELCENTSLDEGDLVRLLRRTVDVLWQIPQI 952
Query: 124 PDVDQRLQKNAVDASNVMDRPPI 146
P V Q L+ NA A M R P+
Sbjct: 953 PRVSQVLKDNARLAVTAMKRFPL 975
>gi|425442478|ref|ZP_18822721.1| putative helicase [Microcystis aeruginosa PCC 9717]
gi|389716493|emb|CCH99283.1| putative helicase [Microcystis aeruginosa PCC 9717]
Length = 975
Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 53/143 (37%), Positives = 81/143 (56%), Gaps = 11/143 (7%)
Query: 11 LKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVINV-------LDEHRSSFLEL 63
L P+QLAA +++++E + W N Y P VI+++ L E R +
Sbjct: 837 LTPSQLAAAISAMITEPPRPDTWCN----YPPVPEVIDILRQGEGNSPGLREVRRLLYQA 892
Query: 64 QEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKL 123
Q ++ + IP L++Q G+ WA G +W E+ + +LD+GDL RLLRRT+D+L QIP++
Sbjct: 893 QSRYDITIPVWLETQLMGIASRWAQGTSWPELCENTSLDEGDLVRLLRRTVDVLWQIPQI 952
Query: 124 PDVDQRLQKNAVDASNVMDRPPI 146
P V Q L+ NA A M R P+
Sbjct: 953 PRVSQVLKDNARLAVTAMKRFPL 975
>gi|159027769|emb|CAO89639.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
Length = 966
Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 53/143 (37%), Positives = 81/143 (56%), Gaps = 11/143 (7%)
Query: 11 LKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVINV-------LDEHRSSFLEL 63
L P+QLAA +++++E + W N Y P VI+++ L E R +
Sbjct: 828 LTPSQLAAAISAMITEPPRPDTWCN----YPPVPEVIDILRQGEGNSPGLREVRRLLYQA 883
Query: 64 QEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKL 123
Q ++ + IP L++Q G+ WA G +W E+ + +LD+GDL RLLRRT+D+L QIP++
Sbjct: 884 QSRYDITIPVWLETQLMGIASRWAQGTSWPELCENTSLDEGDLVRLLRRTVDVLWQIPQI 943
Query: 124 PDVDQRLQKNAVDASNVMDRPPI 146
P V Q L+ NA A M R P+
Sbjct: 944 PRVSQVLKDNARLAVTAMKRFPL 966
>gi|443647322|ref|ZP_21129678.1| DEAD-box ATP-dependent RNA helicase ISE2 [Microcystis aeruginosa
DIANCHI905]
gi|443335499|gb|ELS49967.1| DEAD-box ATP-dependent RNA helicase ISE2 [Microcystis aeruginosa
DIANCHI905]
Length = 975
Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 53/143 (37%), Positives = 81/143 (56%), Gaps = 11/143 (7%)
Query: 11 LKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVINV-------LDEHRSSFLEL 63
L P+QLAA +++++E + W N Y P VI+++ L E R +
Sbjct: 837 LTPSQLAAAISAMITEPPRPDTWCN----YPPVPEVIDILRQGEGNSPGLREVRRLLYQA 892
Query: 64 QEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKL 123
Q ++ + IP L++Q G+ WA G +W E+ + +LD+GDL RLLRRT+D+L QIP++
Sbjct: 893 QSRYDITIPVWLETQLMGIASRWAQGTSWPELCENTSLDEGDLVRLLRRTVDVLWQIPQI 952
Query: 124 PDVDQRLQKNAVDASNVMDRPPI 146
P V Q L+ NA A M R P+
Sbjct: 953 PRVSQVLKDNARLAVTAMKRFPL 975
>gi|172037250|ref|YP_001803751.1| DNA helicase [Cyanothece sp. ATCC 51142]
gi|354553865|ref|ZP_08973171.1| DSH domain protein [Cyanothece sp. ATCC 51472]
gi|171698704|gb|ACB51685.1| DNA helicase [Cyanothece sp. ATCC 51142]
gi|353554582|gb|EHC23972.1| DSH domain protein [Cyanothece sp. ATCC 51472]
Length = 970
Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 56/153 (36%), Positives = 85/153 (55%), Gaps = 11/153 (7%)
Query: 1 MVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVINVLDEHRSSF 60
+V + IL L+P QLAA +++++E ++ W N Y PS V+ + E S
Sbjct: 822 LVFMSGILNPLEPHQLAAAVSAIITETLRPDTWTN----YLPSPEVLRLFRESPEQGVSI 877
Query: 61 LEL-------QEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRT 113
E+ Q ++ + IP L+ + G+VE WA G W+E+ + +LD+GDL RLLRRT
Sbjct: 878 GEMRRLLNQTQRRYQITIPVWLELELIGLVEQWALGGDWQELCENTSLDEGDLVRLLRRT 937
Query: 114 IDLLAQIPKLPDVDQRLQKNAVDASNVMDRPPI 146
IDLL QIP+ P + L A +A ++ R PI
Sbjct: 938 IDLLWQIPQTPGISNYLAATAKEAIVLLKRFPI 970
>gi|425447074|ref|ZP_18827068.1| Similar to tr|Q4C8R2|Q4C8R2_CROWT Helicase [Microcystis aeruginosa
PCC 9443]
gi|389732453|emb|CCI03611.1| Similar to tr|Q4C8R2|Q4C8R2_CROWT Helicase [Microcystis aeruginosa
PCC 9443]
Length = 975
Score = 95.9 bits (237), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 53/143 (37%), Positives = 81/143 (56%), Gaps = 11/143 (7%)
Query: 11 LKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVINV-------LDEHRSSFLEL 63
L P+QLAA +++++E + W N Y P VI+++ L E R +
Sbjct: 837 LTPSQLAAAISAIITEPPRPDTWCN----YPPVPEVIDILRQGEGNSPGLREVRRLLYQA 892
Query: 64 QEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKL 123
Q ++ + IP L++Q G+ WA G +W E+ + +LD+GDL RLLRRT+D+L QIP++
Sbjct: 893 QSRYDITIPVWLETQLMGIASRWAQGTSWPELCENTSLDEGDLVRLLRRTVDVLWQIPQI 952
Query: 124 PDVDQRLQKNAVDASNVMDRPPI 146
P V Q L+ NA A M R P+
Sbjct: 953 PRVSQVLKDNARLAVTAMKRFPL 975
>gi|33862023|ref|NP_893584.1| DNA helicase [Prochlorococcus marinus subsp. pastoris str.
CCMP1986]
gi|33634241|emb|CAE19926.1| putative DNA helicase [Prochlorococcus marinus subsp. pastoris str.
CCMP1986]
Length = 908
Score = 95.5 bits (236), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 85/148 (57%), Gaps = 4/148 (2%)
Query: 1 MVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVINVLDEHRSSF 60
+VL + L DL P LAA+ ++ + + LW N ++PS VI+V N L+ R
Sbjct: 743 LVLLSGYLDDLAPPDLAAIIQAICVDVRRPNLWCN----FKPSIKVIDVFNELESLRKLV 798
Query: 61 LELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQI 120
Q K + P L+++ +G++ WA G W+E++ + +LD+GD+ R+LRR++D+L+QI
Sbjct: 799 ASKQNKFNINTPIFLETELTGIISEWARGKKWKELIFNTSLDEGDVVRILRRSMDVLSQI 858
Query: 121 PKLPDVDQRLQKNAVDASNVMDRPPISE 148
V +L+ A A ++R P+SE
Sbjct: 859 QYCVGVSNKLKNKAKLALKAINRFPVSE 886
>gi|159904128|ref|YP_001551472.1| DNA helicase [Prochlorococcus marinus str. MIT 9211]
gi|159889304|gb|ABX09518.1| putative DNA helicase [Prochlorococcus marinus str. MIT 9211]
Length = 924
Score = 95.5 bits (236), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 52/148 (35%), Positives = 85/148 (57%), Gaps = 4/148 (2%)
Query: 1 MVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVINVLDEHRSSF 60
+ L + L +L+PA LA V + +E + LW + +I P +T N L R
Sbjct: 759 LALMSGHLDELQPAALAGVLEGISTEVNRPDLW--SGFISSPQST--EAFNDLSGIRREL 814
Query: 61 LELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQI 120
QE+ ++IP C + G+VEAW G++W E++ + +LD+GD+ R++RRTIDLL+QI
Sbjct: 815 NSHQERCQIDIPICWSPELMGLVEAWGHGVSWSELIANTSLDEGDVVRIIRRTIDLLSQI 874
Query: 121 PKLPDVDQRLQKNAVDASNVMDRPPISE 148
P + ++L+ NA A ++R P+ E
Sbjct: 875 PHCEAISKQLRDNARLALKAINRFPVCE 902
>gi|428777026|ref|YP_007168813.1| DSH domain-containing protein [Halothece sp. PCC 7418]
gi|428691305|gb|AFZ44599.1| DSH domain protein [Halothece sp. PCC 7418]
Length = 884
Score = 95.1 bits (235), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 52/149 (34%), Positives = 80/149 (53%), Gaps = 4/149 (2%)
Query: 1 MVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVINVLDEHRSSF 60
+ LR+ +L PA LAA +L++E + ++ + P VI+ ++ L R
Sbjct: 739 LALRSGEFDELSPAYLAAASCALITETPR----PDSESYFPPPMPVIHALSELRGVRREL 794
Query: 61 LELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQI 120
++Q +H V IP L+ G+VE W G+ W E+ LD+GDL R+LRRT D L+QI
Sbjct: 795 FQVQRRHRVAIPLWLEPDLIGLVEQWVEGIDWNELCEATTLDEGDLVRILRRTRDFLSQI 854
Query: 121 PKLPDVDQRLQKNAVDASNVMDRPPISEL 149
P +P + L+ NA A M+R P+ E
Sbjct: 855 PHVPHLAASLRTNARLAVEQMERFPVLEF 883
>gi|257059185|ref|YP_003137073.1| DSH domain-containing protein [Cyanothece sp. PCC 8802]
gi|256589351|gb|ACV00238.1| DSH domain protein [Cyanothece sp. PCC 8802]
Length = 967
Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 54/153 (35%), Positives = 84/153 (54%), Gaps = 11/153 (7%)
Query: 1 MVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVIN-------VL 53
+V+ + L L+ QLAA ++L++E ++ W N Y PS +I + L
Sbjct: 819 LVMMSGALERLESPQLAAAVSALITESLRPDTWTN----YLPSPEIIALFTESHPQGVSL 874
Query: 54 DEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRT 113
E R + Q ++ + IP L+ GM+E WA G W+E+ + +LD+GD+ RLLRRT
Sbjct: 875 QEIRRLLYQTQSRYHITIPVWLELDLIGMIEQWALGADWQELCENTSLDEGDVVRLLRRT 934
Query: 114 IDLLAQIPKLPDVDQRLQKNAVDASNVMDRPPI 146
IDLL QIP++P V L+ A +A + R P+
Sbjct: 935 IDLLWQIPQIPGVSDYLKDTAKEAVTRLKRFPL 967
>gi|218246136|ref|YP_002371507.1| DSH domain-containing protein [Cyanothece sp. PCC 8801]
gi|218166614|gb|ACK65351.1| DSH domain protein [Cyanothece sp. PCC 8801]
Length = 967
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 54/153 (35%), Positives = 84/153 (54%), Gaps = 11/153 (7%)
Query: 1 MVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVIN-------VL 53
+V+ + L L+ QLAA ++L++E ++ W N Y PS +I + L
Sbjct: 819 LVMMSGALERLESPQLAAAVSALITESLRPDTWTN----YLPSPEIIALFTESHPQGVSL 874
Query: 54 DEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRT 113
E R + Q ++ + IP L+ GM+E WA G W+E+ + +LD+GD+ RLLRRT
Sbjct: 875 QEIRRLLYQTQSRYHITIPVWLELDLIGMIEQWALGADWQELCENTSLDEGDVVRLLRRT 934
Query: 114 IDLLAQIPKLPDVDQRLQKNAVDASNVMDRPPI 146
IDLL QIP++P V L+ A +A + R P+
Sbjct: 935 IDLLWQIPQIPAVSDYLKDTAKEAVTRLKRFPL 967
>gi|428312000|ref|YP_007122977.1| superfamily II RNA helicase [Microcoleus sp. PCC 7113]
gi|428253612|gb|AFZ19571.1| superfamily II RNA helicase [Microcoleus sp. PCC 7113]
Length = 901
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/147 (34%), Positives = 82/147 (55%), Gaps = 12/147 (8%)
Query: 11 LKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVINVLDEHRSSFLELQEKHGVE 70
L P LA +LV+E + W N Y P I + L R S L+LQ ++ +
Sbjct: 757 LDPHHLAGAMCALVTETPRPDSWTN----YLPPEPAIEALVHLKGTRQSLLKLQYRYDIS 812
Query: 71 IPCCLDSQF--------SGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPK 122
P + +F G+VE WA G++W ++ + +LD+GD+ R+LRRT+D+L+QIP
Sbjct: 813 WPIWPEYKFLDKIVGGLMGLVEQWALGISWTDLCANTSLDEGDVVRILRRTVDILSQIPH 872
Query: 123 LPDVDQRLQKNAVDASNVMDRPPISEL 149
+P V L+ NA+ A ++DR P++E+
Sbjct: 873 VPAVPNSLRANAIRAIQLLDRFPVNEV 899
>gi|428302129|ref|YP_007140435.1| DSH domain-containing protein [Calothrix sp. PCC 6303]
gi|428238673|gb|AFZ04463.1| DSH domain protein [Calothrix sp. PCC 6303]
Length = 894
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 53/143 (37%), Positives = 88/143 (61%), Gaps = 9/143 (6%)
Query: 11 LKPAQLAAVCASLVSEGIKVRLWKNNSYI-YEPSTTVINVINVLDEHRSSFLELQEKHGV 69
L P QLAA+ A+LV+E + +S++ ++ S V L + R + L++Q +HGV
Sbjct: 755 LDPQQLAAIVAALVTE-----TPRPDSFVRFDLSAEVDEAWGRLQKIRKAVLKVQYRHGV 809
Query: 70 EIPCCLDSQFS---GMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDV 126
+P L+ ++ +VE WA G+ W E+ +LD+GD+ R+LRRT+DLL+QIP +P +
Sbjct: 810 ALPVGLEIRYINIISLVEQWALGVEWVELCEHTSLDEGDVVRILRRTLDLLSQIPHVPHL 869
Query: 127 DQRLQKNAVDASNVMDRPPISEL 149
L +NA A ++DR P++E+
Sbjct: 870 SDALYRNARRAMQLIDRFPVNEV 892
>gi|428778819|ref|YP_007170605.1| superfamily II RNA helicase [Dactylococcopsis salina PCC 8305]
gi|428693098|gb|AFZ49248.1| superfamily II RNA helicase [Dactylococcopsis salina PCC 8305]
Length = 884
Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/149 (34%), Positives = 83/149 (55%), Gaps = 4/149 (2%)
Query: 1 MVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVINVLDEHRSSF 60
+ LR+ +L PA LAA C++L++E + ++ + P VIN ++ L R
Sbjct: 739 LALRSGHFDELSPAYLAAACSALITETPR----PDSESDFPPPMPVINALSELRGIRREL 794
Query: 61 LELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQI 120
++Q ++ V IP L+ G+VE W G+ W+++ +LD+GDL R+LRR+ D L+QI
Sbjct: 795 FQVQRRNRVAIPLWLEPDLIGLVEQWVEGIEWQDLCDATSLDEGDLVRILRRSRDFLSQI 854
Query: 121 PKLPDVDQRLQKNAVDASNVMDRPPISEL 149
P +P + L NA A M+R P+ E
Sbjct: 855 PHVPYLPNVLAMNARLAVEQMERFPVQEF 883
>gi|119488898|ref|ZP_01621860.1| antiviral protein [Lyngbya sp. PCC 8106]
gi|119455059|gb|EAW36201.1| antiviral protein [Lyngbya sp. PCC 8106]
Length = 1026
Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 50/145 (34%), Positives = 86/145 (59%), Gaps = 8/145 (5%)
Query: 8 LLDLKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVINVLDEHRSSFLELQEKH 67
L+P+QLAA CA+LV+E + W + Y+ S V + + L R +++Q +
Sbjct: 883 FYQLEPSQLAAACAALVTEISRSDTWTD----YQLSEPVQSALERLWGLRKMLIKVQSHY 938
Query: 68 GVE---IPCCLDSQ-FSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKL 123
VE +P + Q S ++E W G+ W +++ +LD+GDL R++RRT+D L+QIP +
Sbjct: 939 QVEFLVLPERWEHQNMSAIIEQWGQGVDWLQLVEHTSLDEGDLVRMIRRTLDFLSQIPHV 998
Query: 124 PDVDQRLQKNAVDASNVMDRPPISE 148
P ++ ++ A+DA ++DR PI+E
Sbjct: 999 PHLNGSFKQKAMDAKKLLDRYPINE 1023
>gi|425460627|ref|ZP_18840108.1| Similar to tr|Q4C8R2|Q4C8R2_CROWT Helicase [Microcystis aeruginosa
PCC 9808]
gi|389826671|emb|CCI22669.1| Similar to tr|Q4C8R2|Q4C8R2_CROWT Helicase [Microcystis aeruginosa
PCC 9808]
Length = 975
Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 52/143 (36%), Positives = 80/143 (55%), Gaps = 11/143 (7%)
Query: 11 LKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVINV-------LDEHRSSFLEL 63
L P+QLAA +++++E + W N Y P VI+++ L E R +
Sbjct: 837 LTPSQLAAAISAMITEPPRPDTWCN----YPPVPEVIDILRQGEGNSPGLREVRRLLYQA 892
Query: 64 QEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKL 123
Q ++ + IP L++Q G+ WA G +W E+ + +LD+GDL RLLRRT+D+L QIP++
Sbjct: 893 QSRYDITIPVWLETQLMGIASRWAQGTSWPELCENTSLDEGDLVRLLRRTVDVLWQIPQI 952
Query: 124 PDVDQRLQKNAVDASNVMDRPPI 146
P V L+ NA A M R P+
Sbjct: 953 PRVSPVLKDNARLAVTAMKRFPL 975
>gi|87301273|ref|ZP_01084114.1| DEAD/DEAH box helicase-like [Synechococcus sp. WH 5701]
gi|87284241|gb|EAQ76194.1| DEAD/DEAH box helicase-like [Synechococcus sp. WH 5701]
Length = 948
Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 50/149 (33%), Positives = 84/149 (56%), Gaps = 4/149 (2%)
Query: 1 MVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVINVLDEHRSSF 60
+ L + L +L PA+LAAV ++ +E + LW + P ++ L R
Sbjct: 774 LALMSGHLDELNPAELAAVFEAISTEVNRPDLWSG----FPPPPRSEEALHDLSGLRREL 829
Query: 61 LELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQI 120
L QE+ V +P + + G+V AWA G +W +++ + +LD+GD+ R+LRRT+DLLAQ+
Sbjct: 830 LRHQERAHVVVPAWWEPELMGLVHAWARGSSWNDVIANTSLDEGDIVRILRRTVDLLAQV 889
Query: 121 PKLPDVDQRLQKNAVDASNVMDRPPISEL 149
P + ++L+ NA A ++R P+SE
Sbjct: 890 PYAEAISEQLRSNARKALQAINRFPVSEF 918
>gi|166364041|ref|YP_001656314.1| putative helicase [Microcystis aeruginosa NIES-843]
gi|166086414|dbj|BAG01122.1| putative helicase [Microcystis aeruginosa NIES-843]
Length = 975
Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 52/143 (36%), Positives = 80/143 (55%), Gaps = 11/143 (7%)
Query: 11 LKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVINV-------LDEHRSSFLEL 63
L P+QLAA +++++E + W N Y P VI+++ L E R +
Sbjct: 837 LTPSQLAAAISAMITEPPRPDTWCN----YPPVPEVIDILRQGEGNSPGLREVRRLLYQA 892
Query: 64 QEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKL 123
Q ++ + IP L++Q G+ WA G +W E+ + +LD+GDL RLLRRT+D+L QIP++
Sbjct: 893 QSRYDITIPVWLETQLMGIASRWAQGTSWPELCENTSLDEGDLVRLLRRTVDVLWQIPQI 952
Query: 124 PDVDQRLQKNAVDASNVMDRPPI 146
P V L+ NA A M R P+
Sbjct: 953 PRVSPVLKDNARLAVTAMKRFPL 975
>gi|67920852|ref|ZP_00514371.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
[Crocosphaera watsonii WH 8501]
gi|67856969|gb|EAM52209.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
[Crocosphaera watsonii WH 8501]
Length = 970
Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 54/153 (35%), Positives = 85/153 (55%), Gaps = 11/153 (7%)
Query: 1 MVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVIN-------VL 53
MVL + L L+ QLAA +++++E ++ W N Y PS V+++ +
Sbjct: 822 MVLMSSTLEHLEAPQLAAAVSAIITETLRPDTWTN----YLPSPEVLSLFQESPEDGVSI 877
Query: 54 DEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRT 113
E R + Q ++ V IP L+ + G+VE WA G W+E+ + +LD+GDL RLLRRT
Sbjct: 878 GEMRRLLNQTQRRYQVTIPVWLELELMGLVEQWALGGDWQELCENTSLDEGDLVRLLRRT 937
Query: 114 IDLLAQIPKLPDVDQRLQKNAVDASNVMDRPPI 146
+D+L QIP+ P + L A +A ++ R PI
Sbjct: 938 VDILWQIPQTPGISGYLITTAKEAIALLKRFPI 970
>gi|284928620|ref|YP_003421142.1| superfamily II RNA helicase [cyanobacterium UCYN-A]
gi|284809079|gb|ADB94784.1| superfamily II RNA helicase [cyanobacterium UCYN-A]
Length = 966
Score = 93.2 bits (230), Expect = 3e-17, Method: Composition-based stats.
Identities = 51/153 (33%), Positives = 90/153 (58%), Gaps = 11/153 (7%)
Query: 1 MVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVINVLDEHRSS- 59
+V + IL +L LAA+ +++V+E ++ W N Y PS+ ++N+++ + +
Sbjct: 818 IVFMSGILDNLCSHHLAALVSAIVTETLRPDTWTN----YLPSSELLNIVSNCSKDEMNI 873
Query: 60 ------FLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRT 113
++Q+++ + IP L+ +F G+VE WA G W+ + + +LD+GDL RLLRRT
Sbjct: 874 NKIYHLLNKIQKRYQIIIPIYLEFKFIGLVEQWALGEDWKNLCKNTSLDEGDLVRLLRRT 933
Query: 114 IDLLAQIPKLPDVDQRLQKNAVDASNVMDRPPI 146
IDLL+QIP++P + L +NA + R P+
Sbjct: 934 IDLLSQIPQIPGLSDSLIRNAEKTVIQLKRFPV 966
>gi|427720836|ref|YP_007068830.1| DSH domain-containing protein [Calothrix sp. PCC 7507]
gi|427353272|gb|AFY35996.1| DSH domain protein [Calothrix sp. PCC 7507]
Length = 890
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 51/149 (34%), Positives = 86/149 (57%), Gaps = 4/149 (2%)
Query: 1 MVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVINVLDEHRSSF 60
+V + L +L P LAA A+LV+E + ++ ++ S V + + L R
Sbjct: 744 LVFASGELDNLDPHHLAASIAALVTETPR----PDSKVHFDLSHEVADALAKLRGIRRQI 799
Query: 61 LELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQI 120
+LQ ++ V +P L+ ++E WA G+ W E+ LD+GD+ R+LRRT+DLL+QI
Sbjct: 800 FQLQRRYNVALPIWLELDLIALLEQWALGVEWTELCEHTTLDEGDVVRILRRTLDLLSQI 859
Query: 121 PKLPDVDQRLQKNAVDASNVMDRPPISEL 149
P +P++ LQ+NA A ++DR P++E+
Sbjct: 860 PHVPNLPHALQRNAYRAMQLIDRFPVNEV 888
>gi|86609851|ref|YP_478613.1| helicase [Synechococcus sp. JA-2-3B'a(2-13)]
gi|86558393|gb|ABD03350.1| putative helicase [Synechococcus sp. JA-2-3B'a(2-13)]
Length = 802
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 52/138 (37%), Positives = 75/138 (54%), Gaps = 5/138 (3%)
Query: 13 PAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVINVLDEHRSSFLELQEKHGV-EI 71
P LA V A+LVSE + + S V +V++ L R Q +H V +
Sbjct: 668 PHHLAGVVAALVSEAPRSGTYSR----LRTSGLVEDVLHGLRGLRRQLFRSQRQHQVFHV 723
Query: 72 PCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQ 131
P + +G+VE WA G+ W + LD GDL RL+RRT+DLL+QIP +P + L+
Sbjct: 724 PIGFEPSLAGIVEHWAQGIPWETLEASTNLDAGDLVRLIRRTLDLLSQIPYVPHLPAELR 783
Query: 132 KNAVDASNVMDRPPISEL 149
+NA A ++DR P+SEL
Sbjct: 784 ENARQAQKMLDRFPVSEL 801
>gi|352095918|ref|ZP_08956865.1| DSH domain protein [Synechococcus sp. WH 8016]
gi|351677274|gb|EHA60423.1| DSH domain protein [Synechococcus sp. WH 8016]
Length = 911
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 85/148 (57%), Gaps = 4/148 (2%)
Query: 1 MVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVINVLDEHRSSF 60
+ L + L +L PA+LAAV ++ +E + LW + ++ L R
Sbjct: 745 LALMSGHLDELPPAELAAVFEAISTEVNRPDLWS----AFPAPPLAEEALHDLSGIRREL 800
Query: 61 LELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQI 120
L QE+ V +P + + G+VEAWA G TW +++ + +LD+GD+ R++RRT+DLLAQ+
Sbjct: 801 LRAQERFKVVVPAWWEPELMGLVEAWAKGTTWNDLIANTSLDEGDVVRIMRRTVDLLAQV 860
Query: 121 PKLPDVDQRLQKNAVDASNVMDRPPISE 148
P + ++L+KNA A ++R P++E
Sbjct: 861 PYCEAISEQLRKNARAALTAINRFPVAE 888
>gi|87125389|ref|ZP_01081235.1| putative DNA helicase [Synechococcus sp. RS9917]
gi|86167158|gb|EAQ68419.1| putative DNA helicase [Synechococcus sp. RS9917]
Length = 924
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 49/148 (33%), Positives = 87/148 (58%), Gaps = 4/148 (2%)
Query: 1 MVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVINVLDEHRSSF 60
+ L + L +L+PA+LAAV ++ +E + LW + P ++ L R
Sbjct: 758 LALMSGHLDELQPAELAAVFEAISTEVNRPDLWSG----FPPPPRAEEALHDLMGIRREL 813
Query: 61 LELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQI 120
L QE+ V +P + + G+VEAWASG W +++ + +LD+GD+ R++RRT+DLLAQ+
Sbjct: 814 LRAQERAQVVMPAWWEPELMGLVEAWASGTAWNDLIANTSLDEGDVVRIMRRTVDLLAQV 873
Query: 121 PKLPDVDQRLQKNAVDASNVMDRPPISE 148
P + ++L+++A A ++R P++E
Sbjct: 874 PYCEAISEQLRRHARQALKAINRFPVAE 901
>gi|416379953|ref|ZP_11684012.1| Helicase [Crocosphaera watsonii WH 0003]
gi|357265757|gb|EHJ14478.1| Helicase [Crocosphaera watsonii WH 0003]
Length = 970
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 54/153 (35%), Positives = 85/153 (55%), Gaps = 11/153 (7%)
Query: 1 MVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVIN-------VL 53
MVL + L L+ QLAA +++++E ++ W N Y PS V+++ +
Sbjct: 822 MVLMSGTLEHLEAPQLAAAVSAIITETLRPDTWTN----YLPSPEVLSLFQESPEDGVSI 877
Query: 54 DEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRT 113
E R + Q ++ V IP L+ + G+VE WA G W+E+ + +LD+GDL RLLRRT
Sbjct: 878 GEMRRLLNQTQRRYQVTIPVWLELELMGLVEQWALGGDWQELCENTSLDEGDLVRLLRRT 937
Query: 114 IDLLAQIPKLPDVDQRLQKNAVDASNVMDRPPI 146
+D+L QIP+ P + L A +A ++ R PI
Sbjct: 938 VDILWQIPQTPGISGYLITTAKEAIALLKRFPI 970
>gi|116071149|ref|ZP_01468418.1| DEAD/DEAH box helicase-like protein [Synechococcus sp. BL107]
gi|116066554|gb|EAU72311.1| DEAD/DEAH box helicase-like protein [Synechococcus sp. BL107]
Length = 926
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 49/149 (32%), Positives = 84/149 (56%), Gaps = 4/149 (2%)
Query: 1 MVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVINVLDEHRSSF 60
+ L + L +L P LAAV ++ +E + LW + PS + L R
Sbjct: 763 LALMSGHLDELDPPNLAAVFEAISTEVNRPDLWSG----FPPSGPAEEALQDLSGLRREL 818
Query: 61 LELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQI 120
L QE+ V +P + + G+VEAWA G +W +++ + +LD+GD+ R++RRT+DLLAQ+
Sbjct: 819 LRAQERASVVVPAWWEPELMGLVEAWAKGTSWSDLIANTSLDEGDVVRIMRRTVDLLAQV 878
Query: 121 PKLPDVDQRLQKNAVDASNVMDRPPISEL 149
P + ++L+ +A A ++R P++EL
Sbjct: 879 PYCEAISEQLRSHAKQALKAINRFPVAEL 907
>gi|33863754|ref|NP_895314.1| DNA helicase [Prochlorococcus marinus str. MIT 9313]
gi|33635337|emb|CAE21662.1| putative DNA helicase [Prochlorococcus marinus str. MIT 9313]
Length = 924
Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 49/139 (35%), Positives = 80/139 (57%), Gaps = 4/139 (2%)
Query: 10 DLKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVINVLDEHRSSFLELQEKHGV 69
DL PA LAAV ++ +E + LW Y P + ++ L R L QE+ V
Sbjct: 768 DLHPANLAAVFEAISTEVNRPDLWSG----YPPPASAEEALHDLAGIRRELLRAQERCQV 823
Query: 70 EIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQR 129
+P + + G+V+AWA G W +++ + +LD+GD+ R+LRRT+DLLAQ+P + ++
Sbjct: 824 VVPAWWEPELMGLVDAWARGTAWSDLIANTSLDEGDVVRILRRTVDLLAQVPYCEAISEQ 883
Query: 130 LQKNAVDASNVMDRPPISE 148
L++NA A ++R P+ E
Sbjct: 884 LRRNARLALKAINRFPVCE 902
>gi|427724831|ref|YP_007072108.1| DSH domain-containing protein [Leptolyngbya sp. PCC 7376]
gi|427356551|gb|AFY39274.1| DSH domain protein [Leptolyngbya sp. PCC 7376]
Length = 960
Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 50/147 (34%), Positives = 81/147 (55%), Gaps = 15/147 (10%)
Query: 11 LKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVINV-----------LDEHRSS 59
L P LAA +++SE + W + Y V+ V+ + L E R
Sbjct: 818 LSPEHLAAAICAIISEPPRPDSWTD----YSQPKPVLEVLGIRKKDQGHNPVSLWELRRQ 873
Query: 60 FLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQ 119
++Q+ GV +P L+S+F G++E WA G W E+ + +LD+GD+ R+LRRT+D+L Q
Sbjct: 874 LYQVQKHSGVTMPVWLESKFVGLIEQWALGTDWTELCENTSLDEGDIVRMLRRTVDVLWQ 933
Query: 120 IPKLPDVDQRLQKNAVDASNVMDRPPI 146
IP++P++D L + A +A M R P+
Sbjct: 934 IPQIPEIDPDLMRTAKEAVAKMKRFPV 960
>gi|78213558|ref|YP_382337.1| DEAD/DEAH box helicase-like [Synechococcus sp. CC9605]
gi|78198017|gb|ABB35782.1| DEAD/DEAH box helicase-like [Synechococcus sp. CC9605]
Length = 924
Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 83/148 (56%), Gaps = 4/148 (2%)
Query: 1 MVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVINVLDEHRSSF 60
+ L + L DL P LAAV ++ +E + LW + P + L R
Sbjct: 762 LALMSGHLDDLSPPDLAAVFEAISTEVNRPDLWSG----FPPPAAAEEALQDLSGLRREL 817
Query: 61 LELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQI 120
L QE+ GV +P + + G+V+AWA G +W +++ + +LD+GD+ R++RRT+DLLAQ+
Sbjct: 818 LRAQERAGVVVPAWWEPELMGLVDAWARGTSWSDLIANTSLDEGDVVRIMRRTVDLLAQV 877
Query: 121 PKLPDVDQRLQKNAVDASNVMDRPPISE 148
P + ++L+ +A A ++R P++E
Sbjct: 878 PYCEAISEQLRSHARQALKAINRFPVAE 905
>gi|124022170|ref|YP_001016477.1| DNA helicase [Prochlorococcus marinus str. MIT 9303]
gi|123962456|gb|ABM77212.1| putative DNA helicase [Prochlorococcus marinus str. MIT 9303]
Length = 924
Score = 92.4 bits (228), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 83/148 (56%), Gaps = 4/148 (2%)
Query: 1 MVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVINVLDEHRSSF 60
+ L + L DL PA LAAV ++ +E + LW Y P + ++ L R
Sbjct: 759 LALMSGHLDDLHPANLAAVFEAISTEVNRPDLWSG----YPPPASAEEALHDLAGIRREL 814
Query: 61 LELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQI 120
L QE V +P + + G+V+AWA G W +++ + +LD+GD+ R+LRRT+DLLAQ+
Sbjct: 815 LRAQEHCHVVVPAWWEPELMGLVDAWARGTAWSDLIANTSLDEGDVVRILRRTVDLLAQV 874
Query: 121 PKLPDVDQRLQKNAVDASNVMDRPPISE 148
P + ++L++NA A ++R P+ E
Sbjct: 875 PYCEAISEQLRRNARLALKAINRFPVCE 902
>gi|78184204|ref|YP_376639.1| DEAD/DEAH box helicase-like [Synechococcus sp. CC9902]
gi|78168498|gb|ABB25595.1| DEAD/DEAH box helicase-like [Synechococcus sp. CC9902]
Length = 926
Score = 92.0 bits (227), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 49/149 (32%), Positives = 84/149 (56%), Gaps = 4/149 (2%)
Query: 1 MVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVINVLDEHRSSF 60
+ L + L +L P LAAV ++ +E + LW + PS + L R
Sbjct: 763 LALMSGHLDELDPPNLAAVFEAISTEVNRPDLWSG----FPPSGPAEEALQDLSGLRREL 818
Query: 61 LELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQI 120
L QE+ V +P + + G+VEAWA G +W +++ + +LD+GD+ R++RRT+DLLAQ+
Sbjct: 819 LRAQERASVVVPAWWEPELMGLVEAWAKGTSWVDLIANTSLDEGDVVRIMRRTVDLLAQV 878
Query: 121 PKLPDVDQRLQKNAVDASNVMDRPPISEL 149
P + ++L+ +A A ++R P++EL
Sbjct: 879 PYCEAISEQLRSHAKQALKAINRFPVAEL 907
>gi|37522164|ref|NP_925541.1| helicase [Gloeobacter violaceus PCC 7421]
gi|35213164|dbj|BAC90536.1| gll2595 [Gloeobacter violaceus PCC 7421]
Length = 879
Score = 92.0 bits (227), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 80/148 (54%), Gaps = 4/148 (2%)
Query: 1 MVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVINVLDEHRSSF 60
+ L N + L Q+A + A+LVSE + W + PS V I L + R +
Sbjct: 734 LALLNPEVEKLNAVQMAGLAAALVSEPPRPNTWATVT----PSPQVEEAIAALQQTRRNL 789
Query: 61 LELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQI 120
+ LQ + V I L+ + G+VE WA G+ W+ + LD+GDL RLLRRT DLL Q+
Sbjct: 790 VRLQRRQQVLISVWLEERLVGLVELWAKGVDWQTLCGSTNLDEGDLVRLLRRTADLLRQV 849
Query: 121 PKLPDVDQRLQKNAVDASNVMDRPPISE 148
P +P + +++ ++ ++DR P+SE
Sbjct: 850 PHVPYLTDTVRQTCAESQRLLDRFPVSE 877
>gi|414075935|ref|YP_006995253.1| DNA/RNA helicase [Anabaena sp. 90]
gi|413969351|gb|AFW93440.1| DNA/RNA helicase [Anabaena sp. 90]
Length = 893
Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 54/151 (35%), Positives = 88/151 (58%), Gaps = 7/151 (4%)
Query: 1 MVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVINVLDEHRSSF 60
+VL + L ++ P LAAV A+LV+E + + + S L R S
Sbjct: 744 LVLSSGELDNIGPHNLAAVIAALVTESPR----PDTKVDFNLSPEADAAWLTLQPIRRSV 799
Query: 61 LELQEKHGVEIPCCLDSQFSGM---VEAWASGLTWREMMMDCALDDGDLARLLRRTIDLL 117
L++Q +HGV +P L+++F + VE WA G+ W+ + LD+GD+ R+LRRT+DLL
Sbjct: 800 LKVQYRHGVALPVGLETRFISLISLVEQWALGVEWKVLCEKTTLDEGDVVRILRRTLDLL 859
Query: 118 AQIPKLPDVDQRLQKNAVDASNVMDRPPISE 148
+QIP +P++ L++NA A ++DR P++E
Sbjct: 860 SQIPHVPNLPDMLRRNAQRAMQLIDRFPVNE 890
>gi|116073712|ref|ZP_01470974.1| putative DNA helicase [Synechococcus sp. RS9916]
gi|116069017|gb|EAU74769.1| putative DNA helicase [Synechococcus sp. RS9916]
Length = 924
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 49/148 (33%), Positives = 85/148 (57%), Gaps = 4/148 (2%)
Query: 1 MVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVINVLDEHRSSF 60
+ L + L DL PA+LAAV ++ +E + LW + P ++ L R
Sbjct: 758 LALMSGHLDDLPPAELAAVFEAISTEVNRPDLWSG----FPPPPRAEEALHDLMGIRREL 813
Query: 61 LELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQI 120
L QE+ V +P + + G+VEAWA+G W +++ + +LD+GD+ R++RRT+DLLAQ+
Sbjct: 814 LRAQERCNVVVPAWWEPELMGLVEAWANGCAWNDLIANTSLDEGDVVRIMRRTVDLLAQV 873
Query: 121 PKLPDVDQRLQKNAVDASNVMDRPPISE 148
P + ++L+ +A A ++R P++E
Sbjct: 874 PYCEAISEQLRSHARQALRAINRFPVAE 901
>gi|443322322|ref|ZP_21051347.1| superfamily II RNA helicase [Gloeocapsa sp. PCC 73106]
gi|442787927|gb|ELR97635.1| superfamily II RNA helicase [Gloeocapsa sp. PCC 73106]
Length = 1002
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/140 (37%), Positives = 82/140 (58%), Gaps = 8/140 (5%)
Query: 11 LKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVINVLDEHRSSFLELQEKHGVE 70
L P +LA+ ++L++E + W + EPS V+ +I L E R ++Q K+ +
Sbjct: 867 LTPHELASAVSALITEPPRPDTWVD----CEPSPLVLQLIIDLKESRRRLNQVQGKYKAK 922
Query: 71 I----PCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDV 126
+ P L+++ G+VE WA GL W E+ LD+GD+ RLLRRTID+L QIP++P++
Sbjct: 923 LTKIPPVFLETELLGLVEQWALGLEWYELSDLTNLDEGDIVRLLRRTIDMLWQIPQIPEI 982
Query: 127 DQRLQKNAVDASNVMDRPPI 146
L+ NA A ++ R PI
Sbjct: 983 SSNLRDNANKAIALLKRFPI 1002
>gi|113954669|ref|YP_731534.1| superfamily II RNA helicase [Synechococcus sp. CC9311]
gi|113882020|gb|ABI46978.1| Superfamily II RNA helicase [Synechococcus sp. CC9311]
Length = 910
Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 49/148 (33%), Positives = 85/148 (57%), Gaps = 4/148 (2%)
Query: 1 MVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVINVLDEHRSSF 60
+ L + L +L PA+LAAV ++ +E + LW + ++ L R
Sbjct: 744 LALMSGHLDELPPAELAAVFEAISTEVNRPDLWS----AFPAPPLAEEALHDLSGIRREL 799
Query: 61 LELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQI 120
L QE+ V +P + + G+VEAWA G +W +++ + +LD+GD+ R++RRT+DLLAQ+
Sbjct: 800 LRAQERFKVVVPAWWEPELMGLVEAWAKGTSWNDLIANTSLDEGDVVRIMRRTVDLLAQV 859
Query: 121 PKLPDVDQRLQKNAVDASNVMDRPPISE 148
P + ++L+KNA A ++R P++E
Sbjct: 860 PYCEAISEQLRKNARAALIAINRFPVAE 887
>gi|254430185|ref|ZP_05043888.1| DSHCT domain family [Cyanobium sp. PCC 7001]
gi|197624638|gb|EDY37197.1| DSHCT domain family [Cyanobium sp. PCC 7001]
Length = 849
Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 49/139 (35%), Positives = 80/139 (57%), Gaps = 4/139 (2%)
Query: 11 LKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVINVLDEHRSSFLELQEKHGVE 70
L PA+LA+V ++ +E + LW + P V ++ L R Q+ GV
Sbjct: 707 LTPAELASVLEAISTEVNRPDLW----CAWAPPAAVEEALHDLRSLRREIARQQDNAGVA 762
Query: 71 IPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQRL 130
P + + +G+V AWASG +W E+M + +LD+GD+ R++RRT+DLL+Q+P V Q+L
Sbjct: 763 FPIWWEPELTGLVHAWASGTSWSEVMANTSLDEGDVVRVMRRTVDLLSQVPYCEAVTQQL 822
Query: 131 QKNAVDASNVMDRPPISEL 149
+ +A A ++R P+ EL
Sbjct: 823 RDHARLALKSINRFPVCEL 841
>gi|170078848|ref|YP_001735486.1| DEAD/DEAH box helicase [Synechococcus sp. PCC 7002]
gi|169886517|gb|ACB00231.1| DEAD/DEAH box helicase protein [Synechococcus sp. PCC 7002]
Length = 957
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 50/147 (34%), Positives = 81/147 (55%), Gaps = 15/147 (10%)
Query: 11 LKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVINV-----------LDEHRSS 59
L P LAA +++SE + W + Y V+ V+ + L E R
Sbjct: 815 LAPEHLAAAICAIISEPPRGDSWTD----YSQPNAVLEVLGIRKKDQGHNPVSLWELRRQ 870
Query: 60 FLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQ 119
++Q+ GV +P L+S+F G+VE WA G+ W E+ + +LD+GD+ R+LRRT+D+L Q
Sbjct: 871 LYQVQKHCGVTMPVWLESKFIGLVEQWALGVEWTELCENTSLDEGDIVRMLRRTVDVLWQ 930
Query: 120 IPKLPDVDQRLQKNAVDASNVMDRPPI 146
IP++P++ L + A +A M R P+
Sbjct: 931 IPQIPEIKPVLMRTAKEAIAKMKRFPV 957
>gi|123966880|ref|YP_001011961.1| DNA helicase [Prochlorococcus marinus str. MIT 9515]
gi|123201246|gb|ABM72854.1| putative DNA helicase [Prochlorococcus marinus str. MIT 9515]
Length = 908
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 85/148 (57%), Gaps = 4/148 (2%)
Query: 1 MVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVINVLDEHRSSF 60
+VL + L DL P LAA+ ++ + + +W N ++PS VI V N L+
Sbjct: 743 LVLLSGYLDDLTPPDLAAIIQAICVDVRRPNVWCN----FKPSIKVIEVFNELEGLGKLV 798
Query: 61 LELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQI 120
Q+ ++ P L+ + +G++ WASG W+E++ + +LD+GD+ R+LRR++D+L+QI
Sbjct: 799 ASKQKNFNIDTPIFLEIELTGIISEWASGKKWKELIFNTSLDEGDVVRILRRSMDVLSQI 858
Query: 121 PKLPDVDQRLQKNAVDASNVMDRPPISE 148
V +L++ A A ++R P+SE
Sbjct: 859 QYCVGVSNKLKQKAKLALKAINRFPVSE 886
>gi|86607265|ref|YP_476028.1| DEAD/DEAH box helicase [Synechococcus sp. JA-3-3Ab]
gi|86555807|gb|ABD00765.1| ATP-dependent helicase, DEAD/DEAH box family [Synechococcus sp.
JA-3-3Ab]
Length = 803
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 50/142 (35%), Positives = 76/142 (53%), Gaps = 5/142 (3%)
Query: 9 LDLKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVINVLDEHRSSFLELQEKHG 68
L P A V A+LV+E + + S V +V++ L R Q +H
Sbjct: 665 LGCAPHHFAGVIAALVAEPPRSGTYSR----LRTSGLVEDVLHGLRGLRRQLFRSQRQHQ 720
Query: 69 V-EIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVD 127
V +P + +G+VE WA G+ W ++ LD GD+ RL+RRT+DLL+QIP +P +
Sbjct: 721 VFHVPIGFEPGLAGIVEHWAQGIPWEQLEASTNLDAGDIVRLIRRTLDLLSQIPYIPHLP 780
Query: 128 QRLQKNAVDASNVMDRPPISEL 149
L++NA A ++DR P+SEL
Sbjct: 781 AELRENARKAQKLLDRFPVSEL 802
>gi|119513661|ref|ZP_01632665.1| Type III restriction enzyme, res subunit [Nodularia spumigena
CCY9414]
gi|119461690|gb|EAW42723.1| Type III restriction enzyme, res subunit [Nodularia spumigena
CCY9414]
Length = 872
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 52/148 (35%), Positives = 83/148 (56%), Gaps = 4/148 (2%)
Query: 1 MVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVINVLDEHRSSF 60
+V + L L P LAA A+LV E + ++ +E S V+ + L R
Sbjct: 725 LVFESGELEHLDPHHLAAAAAALVIETPR----PDSRVHFELSNEVVEALAKLRNIRRKI 780
Query: 61 LELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQI 120
+LQ ++ V +P L+ + +VE WA G W E+ + LD+GD+ R+LRRT+DLL+QI
Sbjct: 781 FQLQRRYNVALPIWLEFELIAIVEQWALGTPWTELCENTTLDEGDVVRILRRTLDLLSQI 840
Query: 121 PKLPDVDQRLQKNAVDASNVMDRPPISE 148
P +P + + Q+NA A ++DR P++E
Sbjct: 841 PHVPHLSKDFQRNAYRAMQLIDRFPVNE 868
>gi|428769820|ref|YP_007161610.1| DSH domain-containing protein [Cyanobacterium aponinum PCC 10605]
gi|428684099|gb|AFZ53566.1| DSH domain protein [Cyanobacterium aponinum PCC 10605]
Length = 974
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 49/149 (32%), Positives = 78/149 (52%), Gaps = 17/149 (11%)
Query: 11 LKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVINV-------------LDEHR 57
L P LA V +L +E ++ W + Y+PS V++ + V L E R
Sbjct: 830 LTPHHLAGVITALTTESLRSDTWVS----YQPSPEVLDALGVQKMDDVSYSPESELWEIR 885
Query: 58 SSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLL 117
+ Q + + +P L+ G+ EAW G +W E+ + LD+GD+ R+LRRT+D+L
Sbjct: 886 RKLYQAQTRRDISMPVWLERDLIGLAEAWCLGASWEEICNNTTLDEGDIVRVLRRTVDVL 945
Query: 118 AQIPKLPDVDQRLQKNAVDASNVMDRPPI 146
QIP++P +D L + A +A+ M R PI
Sbjct: 946 VQIPQVPSLDFSLIQTAKEAAKSMKRFPI 974
>gi|443325910|ref|ZP_21054583.1| superfamily II RNA helicase [Xenococcus sp. PCC 7305]
gi|442794498|gb|ELS03912.1| superfamily II RNA helicase [Xenococcus sp. PCC 7305]
Length = 966
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 52/159 (32%), Positives = 82/159 (51%), Gaps = 17/159 (10%)
Query: 1 MVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVINV-------- 52
+ R+ L +L P LAA ++LV+E + +W Y P+ V+ + +
Sbjct: 812 IAFRSGELDNLAPHHLAAAVSALVTETPRGDIWCE----YAPAPEVLEALGIQRRQPEQE 867
Query: 53 -----LDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLA 107
L E R ++Q ++GV P + + G+ E WA G+ W E+ + L +GD+
Sbjct: 868 ATTSTLRELRPHLFQVQHRYGVGCPIWREYELVGLAENWALGVEWNELCDNTNLAEGDIV 927
Query: 108 RLLRRTIDLLAQIPKLPDVDQRLQKNAVDASNVMDRPPI 146
R+LRRTID+L QIP++P + L NA DA + M R PI
Sbjct: 928 RMLRRTIDVLLQIPQIPYIPSGLVNNARDAVSAMKRFPI 966
>gi|428771864|ref|YP_007163652.1| DSH domain-containing protein [Cyanobacterium stanieri PCC 7202]
gi|428686143|gb|AFZ46003.1| DSH domain protein [Cyanobacterium stanieri PCC 7202]
Length = 970
Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 49/148 (33%), Positives = 76/148 (51%), Gaps = 16/148 (10%)
Query: 11 LKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVINV------------LDEHRS 58
L P LA +L+++ + W Y+PS V++ + + L E R
Sbjct: 827 LPPHHLAPAITALITDPPRFDTW----VAYQPSPQVLDALGLVKIEDEYNPEEQLRETRR 882
Query: 59 SFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLA 118
+ Q K + +P L+ G+ EAW G+TW E+ + LD+GD+ R+LRRT+D+L
Sbjct: 883 KLYQAQNKKDITMPVYLERDVIGLSEAWCLGVTWDELCSNTTLDEGDIVRILRRTVDVLW 942
Query: 119 QIPKLPDVDQRLQKNAVDASNVMDRPPI 146
QIP++P ++ RL A DA M R PI
Sbjct: 943 QIPQVPGINSRLADTARDAFAKMKRFPI 970
>gi|428318931|ref|YP_007116813.1| DSH domain protein [Oscillatoria nigro-viridis PCC 7112]
gi|428242611|gb|AFZ08397.1| DSH domain protein [Oscillatoria nigro-viridis PCC 7112]
Length = 912
Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 53/141 (37%), Positives = 82/141 (58%), Gaps = 3/141 (2%)
Query: 10 DLKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVINVLDEHRSSFLELQEKHGV 69
+L P LAA CA+LV+E + W + S E + N+ L R ++Q +H
Sbjct: 774 ELDPHHLAAACAALVTEVSRPDSWTHYSLSPEVLAPLDNLQKGL---RRRLFQVQYRHEA 830
Query: 70 EIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQR 129
IP L+ + +VE WA G+ W E++ +LD+GD+ R+LRRT+D L+QIP +P V
Sbjct: 831 AIPIWLERELVTLVEQWALGVEWLELISHTSLDEGDVVRILRRTLDFLSQIPHVPHVSDS 890
Query: 130 LQKNAVDASNVMDRPPISELA 150
L++NA A ++DR P++E A
Sbjct: 891 LRRNACRAMQLIDRFPVNEAA 911
>gi|318042296|ref|ZP_07974252.1| DEAD/DEAH box helicase-like protein [Synechococcus sp. CB0101]
Length = 728
Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 80/139 (57%), Gaps = 4/139 (2%)
Query: 10 DLKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVINVLDEHRSSFLELQEKHGV 69
+L+PA LAAV ++ +E + LW + P ++ L R QE+ V
Sbjct: 575 ELEPADLAAVFEAISTEVNRPDLWSG----FPPPPAAEEALHDLRGIRRELQRQQERASV 630
Query: 70 EIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQR 129
+P + + G+V+AWA G++W +++ + +LD+GD+ R++RRT+DLLAQ+P + ++
Sbjct: 631 VMPLWFEPELMGLVQAWAKGVSWNDLIANTSLDEGDVVRIMRRTVDLLAQVPYCEAISEQ 690
Query: 130 LQKNAVDASNVMDRPPISE 148
L+ NA A ++R P+ E
Sbjct: 691 LRSNARAALKAINRFPVCE 709
>gi|186682114|ref|YP_001865310.1| DSH domain-containing protein [Nostoc punctiforme PCC 73102]
gi|186464566|gb|ACC80367.1| DSH domain protein [Nostoc punctiforme PCC 73102]
Length = 891
Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 52/149 (34%), Positives = 83/149 (55%), Gaps = 4/149 (2%)
Query: 1 MVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVINVLDEHRSSF 60
+V + L +L P LAA A LV E + ++ +E S V + L R
Sbjct: 745 LVFASGELDNLDPHHLAAAAAGLVMETPR----PDSKVNFELSNEVAEALAKLRGIRRQM 800
Query: 61 LELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQI 120
+LQ ++ V +P L+ + +VE WA G+ W E+ + LD+GD+ R+LRRT+DLL+QI
Sbjct: 801 FQLQRRYNVALPIWLEFELIAIVEQWALGMEWTELCENTTLDEGDVVRILRRTLDLLSQI 860
Query: 121 PKLPDVDQRLQKNAVDASNVMDRPPISEL 149
P +P + Q+NA A ++DR P++E+
Sbjct: 861 PHVPHLPDSFQRNAYRAMQLIDRFPVNEV 889
>gi|218437327|ref|YP_002375656.1| DSH domain-containing protein [Cyanothece sp. PCC 7424]
gi|218170055|gb|ACK68788.1| DSH domain protein [Cyanothece sp. PCC 7424]
Length = 1003
Score = 89.0 bits (219), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 86/184 (46%), Gaps = 42/184 (22%)
Query: 1 MVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVIN--------- 51
+V + L L+P LAA ++L++E ++ + Y PS VIN+
Sbjct: 824 LVFMSGELDSLEPPHLAAAVSALITENLR----PDTVSYYPPSLEVINLFQHQPQGDLCL 879
Query: 52 -----------------------------VLDEHRSSFLELQEKHGVEIPCCLDSQFSGM 82
L E R ++ Q K + IP L+ + G+
Sbjct: 880 ETLIFRSHLIEKAKWLWFFDQLYRMGTAVSLQEIRRQLIQSQYKRMITIPVWLEDELMGL 939
Query: 83 VEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNAVDASNVMD 142
VEAWA G W+E+ +LD+GD+ RLLRRT+D+L QIP +P + + L++NA +A M
Sbjct: 940 VEAWARGTEWQELCEQTSLDEGDIVRLLRRTVDVLWQIPYIPRISEMLKQNAREAIRAMK 999
Query: 143 RPPI 146
R P+
Sbjct: 1000 RFPV 1003
>gi|427707494|ref|YP_007049871.1| DSH domain-containing protein [Nostoc sp. PCC 7107]
gi|427359999|gb|AFY42721.1| DSH domain protein [Nostoc sp. PCC 7107]
Length = 890
Score = 88.6 bits (218), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 52/149 (34%), Positives = 85/149 (57%), Gaps = 4/149 (2%)
Query: 1 MVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVINVLDEHRSSF 60
+V + L L P LAA A+LV+E + ++ ++ S V + L R
Sbjct: 744 LVFASGQLNQLDPHHLAAAIAALVTETPR----PDSRVNFDLSQEVAEALAKLRNIRRQM 799
Query: 61 LELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQI 120
+LQ ++ V +P L+ + +VE WA G+ W E+ LD+GD+ R+LRRT+DLL+QI
Sbjct: 800 FQLQRRYNVALPIWLEFELIAIVEKWALGMEWTELCSHTTLDEGDVVRILRRTLDLLSQI 859
Query: 121 PKLPDVDQRLQKNAVDASNVMDRPPISEL 149
P +P + + LQ+NA A ++DR P++E+
Sbjct: 860 PHVPHLPEILQRNAYRAMQLIDRFPVNEV 888
>gi|427704263|ref|YP_007047485.1| superfamily II RNA helicase [Cyanobium gracile PCC 6307]
gi|427347431|gb|AFY30144.1| superfamily II RNA helicase [Cyanobium gracile PCC 6307]
Length = 943
Score = 88.6 bits (218), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 80/139 (57%), Gaps = 4/139 (2%)
Query: 11 LKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVINVLDEHRSSFLELQEKHGVE 70
L PA+LAAV ++ +E + LW Y P ++ L R QE+ V
Sbjct: 788 LDPAELAAVLEAISTEVNRPDLWCG----YPPPPASEEALHDLRSLRRELQRQQERASVV 843
Query: 71 IPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQRL 130
+P + + +G+V AWA G +W +++ + +LD+GD+ R+LRRT+DLLAQIP + ++L
Sbjct: 844 VPVWWEPELTGLVHAWARGASWNDVIANTSLDEGDVVRILRRTVDLLAQIPYCEAISEQL 903
Query: 131 QKNAVDASNVMDRPPISEL 149
++N+ A ++R P+ E+
Sbjct: 904 RRNSRMALKAINRFPVCEI 922
>gi|254423688|ref|ZP_05037406.1| DSHCT domain family [Synechococcus sp. PCC 7335]
gi|196191177|gb|EDX86141.1| DSHCT domain family [Synechococcus sp. PCC 7335]
Length = 886
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 76/138 (55%), Gaps = 4/138 (2%)
Query: 11 LKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVINVLDEHRSSFLELQEKHGVE 70
L+P Q AA CA ++ E + W Y + V+ + L R + Q + ++
Sbjct: 750 LEPQQFAAACAGILMENNRSDTWIR----YHATRPVLEALGGLRSLRRRIFQAQRRQDIQ 805
Query: 71 IPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQRL 130
IP L+ +VE WA W+ + + +LD+GD+ RLLRRT+D L+QIP +P + + +
Sbjct: 806 IPVWLEEDLIALVEQWALETEWQVLCDNTSLDEGDVVRLLRRTLDFLSQIPHVPYLSESV 865
Query: 131 QKNAVDASNVMDRPPISE 148
+ NA A+ +++R P++E
Sbjct: 866 RSNARQAAYLINRFPVNE 883
>gi|334117201|ref|ZP_08491293.1| DSH domain protein [Microcoleus vaginatus FGP-2]
gi|333462021|gb|EGK90626.1| DSH domain protein [Microcoleus vaginatus FGP-2]
Length = 915
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/142 (37%), Positives = 83/142 (58%), Gaps = 5/142 (3%)
Query: 10 DLKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVINVLDEH-RSSFLELQEKHG 68
+L P LAA CA+LV+E + W + Y S V+ ++ L + R ++Q +H
Sbjct: 774 ELDPHHLAAACAALVTEVSRPDSWTH----YSLSPEVLAPLDNLQKGLRRRLFQVQYRHE 829
Query: 69 VEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQ 128
IP L+ +VE WA G+ W E++ +LD+GD+ R+LRRT+D L+QIP +P V
Sbjct: 830 AAIPIWLERDLVTLVEQWALGVEWLELISHTSLDEGDVVRILRRTLDFLSQIPHVPHVSD 889
Query: 129 RLQKNAVDASNVMDRPPISELA 150
L++NA A ++DR P++E A
Sbjct: 890 SLRRNACRAMQLIDRFPVNEAA 911
>gi|317968960|ref|ZP_07970350.1| DEAD/DEAH box helicase-like protein [Synechococcus sp. CB0205]
Length = 936
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 81/148 (54%), Gaps = 4/148 (2%)
Query: 1 MVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVINVLDEHRSSF 60
+ L + L +L PA LAA+ ++ +E + LW Y P ++ L R
Sbjct: 764 LALMSGHLDELDPADLAALLEAISTEVNRPDLWSG----YPPPPAADEAMHDLRGIRREL 819
Query: 61 LELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQI 120
QE V +P + + G+V AWA G++W +++ + +LD+GD+ R++RRT+DLLAQI
Sbjct: 820 QRQQEAGKVVMPVWFEGELMGLVHAWAKGVSWSDLIANTSLDEGDVVRIMRRTVDLLAQI 879
Query: 121 PKLPDVDQRLQKNAVDASNVMDRPPISE 148
P + ++L+ NA A ++R P+ E
Sbjct: 880 PYCEAISEQLRTNARAALKAINRFPVRE 907
>gi|412992553|emb|CCO18533.1| putative DNA helicase [Bathycoccus prasinos]
Length = 1188
Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/135 (34%), Positives = 79/135 (58%), Gaps = 6/135 (4%)
Query: 16 LAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVINVLDEHRSSFLELQEKHGVE-IPCC 74
LA VC ++ S+ + N+Y Y PS + ++ +LQ ++ P
Sbjct: 1058 LAGVCGAMSSDANRAV----NAY-YGPSEELDTILASFVPDLEDIADLQYASRIDNAPLS 1112
Query: 75 LDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNA 134
L + ++E WASG++W ++ D +L +GD+AR+ +RT +LLAQIP+ P V ++L+K A
Sbjct: 1113 LSQDLAALLEQWASGVSWSQIKTDTSLQEGDIARVFKRTAELLAQIPRAPYVSEQLKKTA 1172
Query: 135 VDASNVMDRPPISEL 149
+A +++RPPIS+L
Sbjct: 1173 KEAERIVNRPPISDL 1187
>gi|33865170|ref|NP_896729.1| DNA helicase [Synechococcus sp. WH 8102]
gi|33638854|emb|CAE07151.1| putative DNA helicase [Synechococcus sp. WH 8102]
Length = 909
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 82/148 (55%), Gaps = 4/148 (2%)
Query: 1 MVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVINVLDEHRSSF 60
+ L + L DL LAAV ++ +E + LW + P ++ L R
Sbjct: 747 LALMSGHLDDLSAPDLAAVFEAISTEVNRPDLWSG----FPPPPAAEEALHDLSGLRREL 802
Query: 61 LELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQI 120
L QE+ GV +P + + G+VE+WA G W +++ + +LD+GD+ R++RRT+DLLAQ+
Sbjct: 803 LRAQERLGVVLPAWWEPELMGLVESWARGTDWSDLIANTSLDEGDVVRIMRRTVDLLAQV 862
Query: 121 PKLPDVDQRLQKNAVDASNVMDRPPISE 148
P + ++L+ +A A ++R P++E
Sbjct: 863 PYCEAISEQLRSHARQALRAINRFPVAE 890
>gi|145351001|ref|XP_001419877.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144580110|gb|ABO98170.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 1055
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 63/88 (71%)
Query: 63 LQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPK 122
LQ+ +++P L + + +VE+WASG +W ++ D +LD+GD+ARL RRT +LLAQIP+
Sbjct: 968 LQQSSRIDMPLSLSFEIAALVESWASGTSWDQIRRDTSLDEGDIARLFRRTAELLAQIPR 1027
Query: 123 LPDVDQRLQKNAVDASNVMDRPPISELA 150
+ + L+ A A++V++RPPIS+L+
Sbjct: 1028 TAHLPESLKATAKKANDVVNRPPISDLS 1055
>gi|407960082|dbj|BAM53322.1| antiviral protein [Bacillus subtilis BEST7613]
Length = 1010
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 52/171 (30%), Positives = 82/171 (47%), Gaps = 38/171 (22%)
Query: 10 DLKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVIN------------------ 51
DL+P QLAA ++L++E + W + ++PS V+ +
Sbjct: 844 DLEPEQLAAAASALITETPRSDAWTD----FKPSPVVLAALRPSNDLFGLLFCLKHPQPP 899
Query: 52 -------VLDEH---------RSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREM 95
+ +H R ++ Q + + IP L+ F G+VE WA G+ W +
Sbjct: 900 LALWQAMTVADHLQRLNLWDLRRKLIKAQNQRAIAIPLWLEVDFMGLVEQWALGMEWENL 959
Query: 96 MMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNAVDASNVMDRPPI 146
+LD+GDL RL RRT+DLL QIP++P + RL++NA A M R P+
Sbjct: 960 CRQTSLDEGDLVRLFRRTVDLLWQIPQVPHLSPRLKRNARIAVQQMKRFPL 1010
>gi|298713164|emb|CBJ26920.1| DEAD box helicase [Ectocarpus siliculosus]
Length = 1408
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 52/148 (35%), Positives = 83/148 (56%), Gaps = 4/148 (2%)
Query: 1 MVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVINVLDEHRSSF 60
+VL K +L L +LA++ ++++E + L+ +Y PS V + L S
Sbjct: 1191 LVLTRKSILQLGYTELASLMPAILNEYTRPDLFT----LYGPSEGVSAFLEELAPVASEL 1246
Query: 61 LELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQI 120
E+Q VE P LD + G+VE WA+G W E++ +LD GDL R+LRR +++L QI
Sbjct: 1247 SEIQMLEQVEQPVRLDGKLCGLVEGWANGCDWSELVASTSLDQGDLCRILRRAMEMLRQI 1306
Query: 121 PKLPDVDQRLQKNAVDASNVMDRPPISE 148
P LP + L+ A A++ +DR P+S+
Sbjct: 1307 PVLPGLPAVLKDRARLAADSLDRFPVSD 1334
>gi|16332264|ref|NP_442992.1| antiviral protein [Synechocystis sp. PCC 6803]
gi|383324005|ref|YP_005384859.1| antiviral protein [Synechocystis sp. PCC 6803 substr. GT-I]
gi|383327174|ref|YP_005388028.1| antiviral protein [Synechocystis sp. PCC 6803 substr. PCC-P]
gi|383493058|ref|YP_005410735.1| antiviral protein [Synechocystis sp. PCC 6803 substr. PCC-N]
gi|384438326|ref|YP_005653051.1| antiviral protein [Synechocystis sp. PCC 6803]
gi|451816415|ref|YP_007452867.1| antiviral protein [Synechocystis sp. PCC 6803]
gi|1653894|dbj|BAA18804.1| antiviral protein [Synechocystis sp. PCC 6803]
gi|339275359|dbj|BAK51846.1| antiviral protein [Synechocystis sp. PCC 6803]
gi|359273325|dbj|BAL30844.1| antiviral protein [Synechocystis sp. PCC 6803 substr. GT-I]
gi|359276495|dbj|BAL34013.1| antiviral protein [Synechocystis sp. PCC 6803 substr. PCC-N]
gi|359279665|dbj|BAL37182.1| antiviral protein [Synechocystis sp. PCC 6803 substr. PCC-P]
gi|451782384|gb|AGF53353.1| antiviral protein [Synechocystis sp. PCC 6803]
Length = 1006
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 52/171 (30%), Positives = 82/171 (47%), Gaps = 38/171 (22%)
Query: 10 DLKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVIN------------------ 51
DL+P QLAA ++L++E + W + ++PS V+ +
Sbjct: 840 DLEPEQLAAAASALITETPRSDAWTD----FKPSPVVLAALRPSNDLFGLLFCLKHPQPP 895
Query: 52 -------VLDEH---------RSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREM 95
+ +H R ++ Q + + IP L+ F G+VE WA G+ W +
Sbjct: 896 LALWQAMTVADHLQRLNLWDLRRKLIKAQNQRAIAIPLWLEVDFMGLVEQWALGMEWENL 955
Query: 96 MMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNAVDASNVMDRPPI 146
+LD+GDL RL RRT+DLL QIP++P + RL++NA A M R P+
Sbjct: 956 CRQTSLDEGDLVRLFRRTVDLLWQIPQVPHLSPRLKRNARIAVQQMKRFPL 1006
>gi|427711200|ref|YP_007059824.1| superfamily II RNA helicase [Synechococcus sp. PCC 6312]
gi|427375329|gb|AFY59281.1| superfamily II RNA helicase [Synechococcus sp. PCC 6312]
Length = 896
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/140 (37%), Positives = 77/140 (55%), Gaps = 4/140 (2%)
Query: 10 DLKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVINVLDEHRSSFLELQEKHGV 69
+L P QLAA CA+LV+E + W + Y S V ++ L R + Q + V
Sbjct: 744 ELPPQQLAAACAALVTETPRPDSWTD----YALSAPVEEALSSLRPLRRQLFQAQRRKRV 799
Query: 70 EIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQR 129
P L++ G+VE WA G+ W + LD GDL RLLRRT+D+L+QIP P
Sbjct: 800 IFPIWLETGLVGLVEHWALGIDWSALCQATNLDQGDLVRLLRRTLDVLSQIPHAPHASPT 859
Query: 130 LQKNAVDASNVMDRPPISEL 149
L+K+A A ++DR P+++L
Sbjct: 860 LKKSATQARQLLDRFPVNDL 879
>gi|148243022|ref|YP_001228179.1| superfamily II RNA helicase [Synechococcus sp. RCC307]
gi|147851332|emb|CAK28826.1| Superfamily II RNA helicase [Synechococcus sp. RCC307]
Length = 926
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 50/139 (35%), Positives = 77/139 (55%), Gaps = 4/139 (2%)
Query: 10 DLKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVINVLDEHRSSFLELQEKHGV 69
+L PA LA+V ++ +E + LW Y P ++ L R L QE H V
Sbjct: 771 ELPPADLASVLEAISTEVSRPDLWS----AYPPPPQAEETLHDLRGLRRELLRQQEIHAV 826
Query: 70 EIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQR 129
P + G+V+AWA G +W +++ + +LD+GD+ RLLRRT+DLLAQ+P P V +
Sbjct: 827 VFPVWWEPDLMGLVKAWAEGESWSDLIANTSLDEGDVVRLLRRTVDLLAQLPYCPAVSEE 886
Query: 130 LQKNAVDASNVMDRPPISE 148
L+ N A +++R P+ E
Sbjct: 887 LRSNGRRALQMINRFPVKE 905
>gi|427418494|ref|ZP_18908677.1| superfamily II RNA helicase [Leptolyngbya sp. PCC 7375]
gi|425761207|gb|EKV02060.1| superfamily II RNA helicase [Leptolyngbya sp. PCC 7375]
Length = 907
Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 48/138 (34%), Positives = 78/138 (56%), Gaps = 4/138 (2%)
Query: 11 LKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVINVLDEHRSSFLELQEKHGVE 70
L P Q AAVCA++V+E + W Y S V + L R + Q ++ V
Sbjct: 748 LPPHQFAAVCAAIVTEITRPDTWTQ----YRTSHAVTAALEGLRSTRRQIFQQQRRYQVT 803
Query: 71 IPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQRL 130
+P L+ +VEAWA W E+ + +LD+GD+ R+LRRT+D+LAQIP +P + +
Sbjct: 804 LPVSLEWNLIALVEAWALETEWNELCQNTSLDEGDVVRILRRTLDILAQIPHVPFLPSTV 863
Query: 131 QKNAVDASNVMDRPPISE 148
+ A A+++++R P++E
Sbjct: 864 KSTARQAAHLLNRFPVNE 881
>gi|428175293|gb|EKX44184.1| hypothetical protein GUITHDRAFT_109969 [Guillardia theta CCMP2712]
Length = 1170
Score = 85.5 bits (210), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 52/155 (33%), Positives = 88/155 (56%), Gaps = 12/155 (7%)
Query: 1 MVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSYI-YEPSTTVINVINVLDEHRSS 59
++L N IL +L P +LAA + +VS+ L + + YI ++ S V + + + +S
Sbjct: 869 VLLYNDILYELGPHELAAALSCVVSD-----LNRPDIYIAFDASPKVQDFVEQASDMQSR 923
Query: 60 FLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQ 119
+ Q +G+ LD F+G+VEAWA G +W ++ ++ +GD+ R+LRR +D+L Q
Sbjct: 924 VIASQLANGLTFEVPLDPSFAGLVEAWALGTSWNSLLAMTSMQEGDVIRVLRRVLDILRQ 983
Query: 120 IPKLP------DVDQRLQKNAVDASNVMDRPPISE 148
IP+LP V ++ NA A +MDR P+S+
Sbjct: 984 IPRLPYVPGERGVGAEIRLNARRALTLMDRFPVSD 1018
>gi|307150235|ref|YP_003885619.1| DEAD/DEAH box helicase [Cyanothece sp. PCC 7822]
gi|306980463|gb|ADN12344.1| DEAD/DEAH box helicase domain protein [Cyanothece sp. PCC 7822]
Length = 1004
Score = 85.5 bits (210), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 57/186 (30%), Positives = 84/186 (45%), Gaps = 44/186 (23%)
Query: 1 MVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVIN--------- 51
+VL + L L+P LAA ++L++E ++ + Y PS VI V
Sbjct: 823 LVLMSGELEQLEPPHLAAAVSALITETLR----PDTMSYYPPSLQVIEVFQRQPKGEETL 878
Query: 52 -------------------------------VLDEHRSSFLELQEKHGVEIPCCLDSQFS 80
L E R + Q + + IP L+ +
Sbjct: 879 EILILRAHLAKEAYWLWFFAVLYRLVKGGPVSLQETRRQLFQSQRQKMITIPVWLEDELM 938
Query: 81 GMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNAVDASNV 140
G+VEAWA G W+++ +LD+GDL RLLRRT+DLL QIP +P V L++NA +A
Sbjct: 939 GLVEAWARGTEWQDLCDATSLDEGDLVRLLRRTVDLLWQIPYIPGVSAMLRQNAKEAIIA 998
Query: 141 MDRPPI 146
M R P+
Sbjct: 999 MKRFPV 1004
>gi|443317292|ref|ZP_21046707.1| superfamily II RNA helicase [Leptolyngbya sp. PCC 6406]
gi|442783111|gb|ELR93036.1| superfamily II RNA helicase [Leptolyngbya sp. PCC 6406]
Length = 908
Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 84/163 (51%), Gaps = 28/163 (17%)
Query: 11 LKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVINVLDEHRSSFLELQEKHGVE 70
L P+QLAA CA+LV E + W N Y+PS +V++ + L R ++Q + V
Sbjct: 748 LSPSQLAAACAALVVENSRPDTWSN----YDPSASVLDALGGLRNQRRELFQIQRQEDVN 803
Query: 71 IPCCLDSQFSGMVEAWA------------------------SGLTWREMMMDCALDDGDL 106
+P L+ G+VE WA G W ++ + +LD+GD+
Sbjct: 804 VPIWLEFDLIGIVERWADMGEGQLFTLPASNPEQPEAEDEGEGKDWPDLCGNTSLDEGDI 863
Query: 107 ARLLRRTIDLLAQIPKLPDVDQRLQKNAVDASNVMDRPPISEL 149
R+LRRT+D L+QIP +P +D L+ A A +++R P++E+
Sbjct: 864 VRILRRTLDFLSQIPHVPHIDDNLRTTARRAVALLNRFPVNEV 906
>gi|354566612|ref|ZP_08985784.1| DSH domain protein [Fischerella sp. JSC-11]
gi|353545628|gb|EHC15079.1| DSH domain protein [Fischerella sp. JSC-11]
Length = 891
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 63/93 (67%)
Query: 57 RSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDL 116
R +LQ ++ V +P L+ + +VE WA G+ W E+ + LD+GD+ R+LRRT+DL
Sbjct: 797 RRKMFQLQRRYNVALPIWLEFELIALVEQWALGMDWVELCDNTTLDEGDVVRILRRTLDL 856
Query: 117 LAQIPKLPDVDQRLQKNAVDASNVMDRPPISEL 149
L+QIP +P + + L++NA+ A ++DR P++E+
Sbjct: 857 LSQIPHVPYMSESLRRNALRAIQLIDRFPVNEV 889
>gi|434396648|ref|YP_007130652.1| DSH domain protein [Stanieria cyanosphaera PCC 7437]
gi|428267745|gb|AFZ33686.1| DSH domain protein [Stanieria cyanosphaera PCC 7437]
Length = 977
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 77/150 (51%), Gaps = 18/150 (12%)
Query: 11 LKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVI--------------NVLDEH 56
L+P QLAA +L++E + +W + + P V+ + ++L E
Sbjct: 832 LEPPQLAAAVCALITETPRGDVWCD----FPPPPEVLEALGIKKRQDANKSAKTSILREI 887
Query: 57 RSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDL 116
R ++Q ++GV +P + + G+ + W G+ W E+ LD+GD+ R+LRRT+D+
Sbjct: 888 RPHLFQVQHRYGVGLPIWREYELIGLAQQWVLGIEWNELCDSTNLDEGDIVRMLRRTLDV 947
Query: 117 LAQIPKLPDVDQRLQKNAVDASNVMDRPPI 146
L QIP++P L NA + +M R PI
Sbjct: 948 LWQIPQMPHASSTLVNNAQEGIAMMKRFPI 977
>gi|303291135|ref|XP_003064854.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226453880|gb|EEH51188.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 1584
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 82/150 (54%), Gaps = 5/150 (3%)
Query: 1 MVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVINVLDEHRSSF 60
+ L + + DL QLA V ++ ++ + S Y+PS + + L+ +
Sbjct: 1440 VALSDACVADLDEYQLAGVFGAICADANR-----PASSSYDPSAKLRAALRNLEPIAAGV 1494
Query: 61 LELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQI 120
+ +Q + G+ L + + EAWASG TW ++ D LD+GD+AR+ RRT +LLAQ
Sbjct: 1495 MTVQYEAGMSSSVTLSDGVAALCEAWASGATWDQIRRDTNLDEGDIARVFRRTAELLAQA 1554
Query: 121 PKLPDVDQRLQKNAVDASNVMDRPPISELA 150
P+ ++ + ++K A A ++ RPPI++L+
Sbjct: 1555 PRTRELPESVRKRAKAAEKLVLRPPITDLS 1584
>gi|255082724|ref|XP_002504348.1| predicted protein [Micromonas sp. RCC299]
gi|226519616|gb|ACO65606.1| predicted protein [Micromonas sp. RCC299]
Length = 934
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 80/146 (54%), Gaps = 5/146 (3%)
Query: 1 MVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVINVLDEHRSSF 60
+ L ++ L L P Q+A V +L + + S Y+PS + N + L+ +
Sbjct: 794 VALSSECLEGLDPTQIAGVAGALCCDSNR-----PTSCDYDPSPALGNALADLEPEMAEV 848
Query: 61 LELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQI 120
+ LQ + + P + + +VE+WASG TW ++ D L++GD+AR+ RRT +LLAQ+
Sbjct: 849 MALQFEAAMSSPVNMSRAVAALVESWASGATWDQVRGDTNLEEGDIARVFRRTSELLAQM 908
Query: 121 PKLPDVDQRLQKNAVDASNVMDRPPI 146
P+ ++ +K A A+ ++ RPPI
Sbjct: 909 PRARELPLATRKAAEQAAQLVLRPPI 934
>gi|81300133|ref|YP_400341.1| DEAD/DEAH box helicase-like protein [Synechococcus elongatus PCC
7942]
gi|81169014|gb|ABB57354.1| DEAD/DEAH box helicase-like [Synechococcus elongatus PCC 7942]
Length = 919
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 48/149 (32%), Positives = 81/149 (54%), Gaps = 4/149 (2%)
Query: 1 MVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVINVLDEHRSSF 60
+VL + L L PA+ AA +LV+E + LW ++ V + + + R
Sbjct: 771 LVLMSGELDGLTPAEFAAASEALVTEVSRPDLWTR----FDVPPAVEDALMGVRGLRRQL 826
Query: 61 LELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQI 120
+ Q + V P L+ +G+V+AWA G+ W E+ +LD+GD+ R+LRRTID LAQI
Sbjct: 827 QQQQSRRNVFTPIWLELDLTGLVKAWAEGMEWNELCAATSLDEGDIVRVLRRTIDFLAQI 886
Query: 121 PKLPDVDQRLQKNAVDASNVMDRPPISEL 149
P +P + ++ A A +++R P+ ++
Sbjct: 887 PHMPYLQGGVKNTASTALGLINRFPVKDM 915
>gi|56750238|ref|YP_170939.1| helicase [Synechococcus elongatus PCC 6301]
gi|56685197|dbj|BAD78419.1| putative helicase [Synechococcus elongatus PCC 6301]
Length = 919
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 48/149 (32%), Positives = 81/149 (54%), Gaps = 4/149 (2%)
Query: 1 MVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVINVLDEHRSSF 60
+VL + L L PA+ AA +LV+E + LW ++ V + + + R
Sbjct: 771 LVLMSGELDGLTPAEFAAASEALVTEVSRPDLWTR----FDVPPAVEDALMGVRGLRRQL 826
Query: 61 LELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQI 120
+ Q + V P L+ +G+V+AWA G+ W E+ +LD+GD+ R+LRRTID LAQI
Sbjct: 827 QQQQSRRNVFTPIWLELDLTGLVKAWAEGMEWNELCAATSLDEGDIVRVLRRTIDFLAQI 886
Query: 121 PKLPDVDQRLQKNAVDASNVMDRPPISEL 149
P +P + ++ A A +++R P+ ++
Sbjct: 887 PHMPYLQGGVKNTASTALGLINRFPVKDM 915
>gi|406981420|gb|EKE02900.1| hypothetical protein ACD_20C00317G0035 [uncultured bacterium]
Length = 773
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 76/142 (53%), Gaps = 4/142 (2%)
Query: 7 ILLDLKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVINVLDEHRSSFLELQEK 66
I+ L PA+LAAV ++ +E + + + + +I V+ ++Q+K
Sbjct: 634 IMDGLSPAELAAVVCAVATEEPRSQFYSRFQLGAKARKAIIEGREVV----RKVWKVQKK 689
Query: 67 HGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDV 126
+ V P L+ +S +VE W +G W E++ + +GDL R +RTIDLL Q+ +P+V
Sbjct: 690 YDVNTPILLNPHYSPLVEFWTNGGEWEELIKGLEMGEGDLVRTFKRTIDLLRQLANMPNV 749
Query: 127 DQRLQKNAVDASNVMDRPPISE 148
+++ + A A ++R P+SE
Sbjct: 750 PKQVAQTASIAMECINREPVSE 771
>gi|22297893|ref|NP_681140.1| hypothetical protein tlr0350 [Thermosynechococcus elongatus BP-1]
gi|22294071|dbj|BAC07902.1| tlr0350 [Thermosynechococcus elongatus BP-1]
Length = 889
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 51/149 (34%), Positives = 78/149 (52%), Gaps = 4/149 (2%)
Query: 1 MVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVINVLDEHRSSF 60
+ L + L DL P LAA A+LV+E + W N Y + V + L R
Sbjct: 734 LALASGELNDLPPHLLAAAVAALVTETPRSDSWCN----YPIPSEVEERLAALSPIRRRL 789
Query: 61 LELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQI 120
++Q ++ + P + G+VE WA G W E+ LD GD+ RLLRRT+D L+QI
Sbjct: 790 FQVQRRYQIIFPLWYEWDLIGLVEQWALGTPWHELCAQTNLDAGDIVRLLRRTLDFLSQI 849
Query: 121 PKLPDVDQRLQKNAVDASNVMDRPPISEL 149
P P +L+++A A ++DR P+++L
Sbjct: 850 PHAPHTSPQLRQSAQQARYLLDRFPVNDL 878
>gi|434392251|ref|YP_007127198.1| DSH domain protein [Gloeocapsa sp. PCC 7428]
gi|428264092|gb|AFZ30038.1| DSH domain protein [Gloeocapsa sp. PCC 7428]
Length = 892
Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 52/140 (37%), Positives = 80/140 (57%), Gaps = 4/140 (2%)
Query: 10 DLKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVINVLDEHRSSFLELQEKHGV 69
L P LAA A+LV+E + W Y ++ V + L R +LQ ++ V
Sbjct: 755 QLDPHHLAAAIAALVTENTRPDSWVR----YTLASEVEEALAGLRSIRRQLFQLQRRYNV 810
Query: 70 EIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQR 129
P L+ +VE WA G+ W E+ + +LD+GD+ RLLRRT+DLL+QIP +P + +
Sbjct: 811 AFPIWLEYDLVALVEQWALGVEWSELCANTSLDEGDVVRLLRRTLDLLSQIPHIPYLSEA 870
Query: 130 LQKNAVDASNVMDRPPISEL 149
LQ+NA A ++DR P++E+
Sbjct: 871 LQRNAYRAMQLLDRFPVNEI 890
>gi|387208361|gb|AFJ69083.1| superfamily ii rna helicase, partial [Nannochloropsis gaditana
CCMP526]
Length = 123
Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 57/102 (55%), Gaps = 2/102 (1%)
Query: 40 YEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDC 99
Y S + L+ R L Q+ G++ PC LD +G+ + W +G +WRE++
Sbjct: 22 YTASEAAFLHLERLEPIREELLMAQKARGLDFPCPLDPLLAGVAQCWLAGFSWRELVETT 81
Query: 100 ALDDGDLARLLRRTIDLLAQIPKLPD--VDQRLQKNAVDASN 139
+LD GD+ R +R+ ID L QIP LP V +RL+ A +A++
Sbjct: 82 SLDQGDVCRHVRKVIDALRQIPVLPKGLVPERLKNTAREAAD 123
>gi|260435087|ref|ZP_05789057.1| superfamily II RNA helicase [Synechococcus sp. WH 8109]
gi|260412961|gb|EEX06257.1| superfamily II RNA helicase [Synechococcus sp. WH 8109]
Length = 99
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 54/78 (69%)
Query: 71 IPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQRL 130
+P + + G+V+AWA G +W +++ + +LD+GD+ R++RRT+DLLAQ+P + ++L
Sbjct: 3 VPAWWEPELMGLVDAWARGTSWSDLIANTSLDEGDVVRIMRRTVDLLAQVPYCEAISEQL 62
Query: 131 QKNAVDASNVMDRPPISE 148
+ +A A ++R P++E
Sbjct: 63 RSHARQALKAINRFPVAE 80
>gi|443311900|ref|ZP_21041522.1| superfamily II RNA helicase [Synechocystis sp. PCC 7509]
gi|442777975|gb|ELR88246.1| superfamily II RNA helicase [Synechocystis sp. PCC 7509]
Length = 893
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/141 (35%), Positives = 79/141 (56%), Gaps = 4/141 (2%)
Query: 10 DLKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVINVLDEHRSSFLELQEKHGV 69
+L P LAA A++V+E + W Y V + L R + +LQ ++ +
Sbjct: 756 ELDPQCLAAAIAAIVTETPRPDTWVR----YTLPIPVEEALAGLRSTRRNLFQLQRRYNI 811
Query: 70 EIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQR 129
+P L+ ++E WA G+ W E+ +LD+GD+ RLLRRT+DLL+QIP +P +
Sbjct: 812 TLPIWLEYDLVALLEQWALGVDWVELCSHTSLDEGDVVRLLRRTLDLLSQIPYVPHLPTS 871
Query: 130 LQKNAVDASNVMDRPPISELA 150
LQ+NA A ++DR P++E A
Sbjct: 872 LQRNAYRAVQLIDRFPVNETA 892
>gi|434403322|ref|YP_007146207.1| superfamily II RNA helicase [Cylindrospermum stagnale PCC 7417]
gi|428257577|gb|AFZ23527.1| superfamily II RNA helicase [Cylindrospermum stagnale PCC 7417]
Length = 892
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/149 (36%), Positives = 87/149 (58%), Gaps = 4/149 (2%)
Query: 1 MVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVINVLDEHRSSF 60
+V + L +L P LAA A+LV+E + ++ YE S V + L R
Sbjct: 746 LVFASGELDNLDPHHLAAAAAALVTETPR----PDSKVRYELSNEVAEALAKLRGIRRQM 801
Query: 61 LELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQI 120
++Q ++ V +P L+ + +VE WA G+ W E+ + LD+GD+ RLLRRT+DLL+QI
Sbjct: 802 FQVQRRYNVALPIWLEFELIAIVEQWALGMEWIELCENTTLDEGDVVRLLRRTLDLLSQI 861
Query: 121 PKLPDVDQRLQKNAVDASNVMDRPPISEL 149
P +P++ LQ+NA A ++DR P++E+
Sbjct: 862 PHVPNLPDSLQRNAYRAMQLIDRFPVNEV 890
>gi|282899895|ref|ZP_06307856.1| Type III restriction enzyme, res subunit [Cylindrospermopsis
raciborskii CS-505]
gi|281195165|gb|EFA70101.1| Type III restriction enzyme, res subunit [Cylindrospermopsis
raciborskii CS-505]
Length = 932
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 43/109 (39%), Positives = 67/109 (61%)
Query: 43 STTVINVINVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALD 102
S V + ++ L R ++Q ++ V +P L+ + +VE WA G W ++ LD
Sbjct: 824 SNEVGSALSKLRNIRRKLFQIQHRYHVALPIWLEFELIAIVEQWALGTKWLQLCAMTTLD 883
Query: 103 DGDLARLLRRTIDLLAQIPKLPDVDQRLQKNAVDASNVMDRPPISELAG 151
+GD+ RLLRRT+DLL+QIP P V + L+KNA A ++DR P++E+AG
Sbjct: 884 EGDVVRLLRRTLDLLSQIPHAPFVSESLRKNAGRAMQLIDRFPVNEVAG 932
>gi|452822714|gb|EME29731.1| ATP-dependent RNA helicase [Galdieria sulphuraria]
Length = 927
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 62/113 (54%), Gaps = 4/113 (3%)
Query: 12 KPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVINVLDEHRSSFLELQEKHGVEI 71
+P L V A+++ + I+ ++ +E S+ + ++ L + + +Q +HG+
Sbjct: 813 EPHHLIGVVATVIGDPIR----EDAVINWEASSITLTLLEQLQVYYDQVVSIQNQHGIVC 868
Query: 72 PCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLP 124
++ +SG+ E WA W ++ +LD+GD+ R LRR +D+L QIP+LP
Sbjct: 869 FTRMEPGWSGIAETWAKEANWSRLVSGTSLDEGDICRNLRRVLDILRQIPRLP 921
>gi|440682616|ref|YP_007157411.1| DSH domain protein [Anabaena cylindrica PCC 7122]
gi|428679735|gb|AFZ58501.1| DSH domain protein [Anabaena cylindrica PCC 7122]
Length = 890
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/148 (35%), Positives = 86/148 (58%), Gaps = 4/148 (2%)
Query: 1 MVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVINVLDEHRSSF 60
+V+ + L +L P LAA A+LV+E + ++ ++ S V + + L R
Sbjct: 744 LVIASGELDNLDPHHLAAAAAALVTETPR----PDSKVRFDLSNEVADALAKLRGIRRQL 799
Query: 61 LELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQI 120
++Q ++ V +P L+ + +VE WA G W E+ + LD+GD+ RLLRRT+DLL+QI
Sbjct: 800 FQIQRRYNVALPIWLEFELIAIVEQWALGKEWVELCANTTLDEGDVVRLLRRTLDLLSQI 859
Query: 121 PKLPDVDQRLQKNAVDASNVMDRPPISE 148
P +P V L++NA A ++DR P++E
Sbjct: 860 PHVPYVQDSLRRNAQRAMQLIDRFPVNE 887
>gi|428206722|ref|YP_007091075.1| DSH domain-containing protein [Chroococcidiopsis thermalis PCC
7203]
gi|428008643|gb|AFY87206.1| DSH domain protein [Chroococcidiopsis thermalis PCC 7203]
Length = 889
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 62/93 (66%)
Query: 57 RSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDL 116
R +LQ ++ V IP L+ ++E W+ G+ W ++ + +LD+GD+ RLLRRT+DL
Sbjct: 793 RRQLFQLQRRYNVTIPIWLEYDLVALIEQWSLGVEWTDLCANTSLDEGDVVRLLRRTLDL 852
Query: 117 LAQIPKLPDVDQRLQKNAVDASNVMDRPPISEL 149
L+QIP +P + + L++NA A +MDR P++E+
Sbjct: 853 LSQIPHVPFLSESLRRNAYRAIQLMDRFPVNEV 885
>gi|298492674|ref|YP_003722851.1| DSH domain-containing protein ['Nostoc azollae' 0708]
gi|298234592|gb|ADI65728.1| DSH domain protein ['Nostoc azollae' 0708]
Length = 890
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/138 (35%), Positives = 82/138 (59%), Gaps = 4/138 (2%)
Query: 11 LKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVINVLDEHRSSFLELQEKHGVE 70
L P LAA A+LV+E + ++ ++ S+ V + + L R ++Q ++ V
Sbjct: 754 LDPHHLAAAAAALVTETPR----PDSKVHFDLSSEVADALAKLRGIRRQLFQIQRRYNVA 809
Query: 71 IPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQRL 130
+P L+ + ++E WA G+ W ++ + LD+GD+ RLLRRT+DLL+QIP +P V L
Sbjct: 810 LPIWLEFELIAIIEQWALGMDWVQLCANTTLDEGDVVRLLRRTLDLLSQIPHVPLVPDSL 869
Query: 131 QKNAVDASNVMDRPPISE 148
+KNA A ++DR P++E
Sbjct: 870 RKNAQRAMQLIDRFPVNE 887
>gi|282897088|ref|ZP_06305090.1| Type III restriction enzyme, res subunit [Raphidiopsis brookii D9]
gi|281197740|gb|EFA72634.1| Type III restriction enzyme, res subunit [Raphidiopsis brookii D9]
Length = 932
Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 50/140 (35%), Positives = 82/140 (58%), Gaps = 4/140 (2%)
Query: 10 DLKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVINVLDEHRSSFLELQEKHGV 69
+L P LAA A+LV+E + ++ ++ S V + ++ L R ++Q ++ V
Sbjct: 795 NLDPHHLAAAIAALVTETPR----PDSRVSFDLSDEVGSALSNLRNIRRKLFQIQHRYHV 850
Query: 70 EIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQR 129
+P L+ + +VE WA G W ++ LD+GD+ RLLRRT+DLL+QIP P V +
Sbjct: 851 ALPIWLEFELIAIVEQWALGTKWLQICAMTTLDEGDVVRLLRRTLDLLSQIPHAPFVSES 910
Query: 130 LQKNAVDASNVMDRPPISEL 149
L+KNA A ++DR P++E+
Sbjct: 911 LRKNAGRAMQLIDRFPVNEV 930
>gi|449018272|dbj|BAM81674.1| ATP-dependent RNA helicase [Cyanidioschyzon merolae strain 10D]
Length = 1214
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/170 (30%), Positives = 76/170 (44%), Gaps = 32/170 (18%)
Query: 8 LLDLKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVI-NVLDEHRSSFLELQEK 66
L L P +LAAV AS+ ++ L + PS V+++ VL R Q++
Sbjct: 1001 LAGLAPHELAAVVASIAAD---TSLPPGGYCRFLPSVRVLDLCREVLGPLRKQLAAAQQE 1057
Query: 67 --------------HGVEIP-CCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLR 111
+ IP L +G+VEAWA W ++ +LD+GD+ RLLR
Sbjct: 1058 ALETYWSPSMATLNGELMIPDVRLSYDLAGVVEAWACETPWSTLLNGVSLDEGDIVRLLR 1117
Query: 112 RTIDLLAQIPKLPD-------------VDQRLQKNAVDASNVMDRPPISE 148
RTIDLL QI L V +L NA A ++DR P+++
Sbjct: 1118 RTIDLLRQIANLGTSSGLGWSRRVAALVSSQLVVNAKRALTLIDRYPVND 1167
>gi|219111707|ref|XP_002177605.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217410490|gb|EEC50419.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 1209
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 65/129 (50%), Gaps = 15/129 (11%)
Query: 5 NKILLDLKPAQLAAVCASLVSEGIK------VRLWKNNSYIYEPSTTVINVINVLDEHRS 58
N +L + P++LA AS+V++ + V+L++N + + + VI
Sbjct: 1012 NGLLRAMDPSELAGYVASIVTDNSRGNGAPVVQLFQNLTPLQQ------RVIQSSLVSME 1065
Query: 59 SFLELQEKHGVE---IPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTID 115
+E+Q+ +GV+ C LD +V AWASG +W+E + GDLAR L R +D
Sbjct: 1066 RLVEVQKLYGVDEKTRSCILDISNCEVVTAWASGCSWQEALEISGSPPGDLARTLSRVLD 1125
Query: 116 LLAQIPKLP 124
+ Q+ +P
Sbjct: 1126 AVRQLGNMP 1134
>gi|452912070|ref|ZP_21960727.1| putative helicase [Kocuria palustris PEL]
gi|452832771|gb|EME35595.1| putative helicase [Kocuria palustris PEL]
Length = 957
Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 39/149 (26%), Positives = 64/149 (42%), Gaps = 15/149 (10%)
Query: 1 MVLRNKILLDLKPAQLAAVCASLVSE------GIKVRLWKNNSYIYEPSTTVINVINVLD 54
M LR+ IL L PA +AAV + G + RL PS + +
Sbjct: 805 MGLRDGILDGLDPASIAAVATVFTYQAKRQDAGARPRL---------PSAKIEQAVATAV 855
Query: 55 EHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTI 114
H + +L+E+H V+ + G + WA G + R + D L GD R ++ I
Sbjct: 856 THWTRLTDLEEQHRVDQTAEPELGMVGPMHRWARGGSLRATLEDTELAAGDFVRWTKQVI 915
Query: 115 DLLAQIPKLPDVDQRLQKNAVDASNVMDR 143
DLL Q+ + +D + + A +++ R
Sbjct: 916 DLLDQVASIRGLDAQTRTGCQRAVDLIRR 944
>gi|392426422|ref|YP_006467416.1| superfamily II RNA helicase [Desulfosporosinus acidiphilus SJ4]
gi|391356385|gb|AFM42084.1| superfamily II RNA helicase [Desulfosporosinus acidiphilus SJ4]
Length = 749
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 39/69 (56%), Gaps = 11/69 (15%)
Query: 75 LDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNA 134
D + SG+ AW+ G ++ E+ C LD+GD+ + RRTIDLL Q+ ++A
Sbjct: 674 FDPRVSGITYAWSQGQSFSEVQKMCNLDEGDIISVFRRTIDLLRQM-----------RDA 722
Query: 135 VDASNVMDR 143
V+ SN+ R
Sbjct: 723 VNDSNLRSR 731
>gi|84496432|ref|ZP_00995286.1| putative ATP-dependent RNA helicase [Janibacter sp. HTCC2649]
gi|84383200|gb|EAP99081.1| putative ATP-dependent RNA helicase [Janibacter sp. HTCC2649]
Length = 956
Score = 49.7 bits (117), Expect = 4e-04, Method: Composition-based stats.
Identities = 38/137 (27%), Positives = 62/137 (45%), Gaps = 5/137 (3%)
Query: 3 LRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVINVLDEHRSSFLE 62
LR+ + + L LAA ++LV E R + + P+ V I + S +
Sbjct: 811 LRHDVWMRLDAPGLAACVSTLVHEP---RHEQADPSPRMPNEDVAAAITEMQRRWSELDD 867
Query: 63 LQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPK 122
L+ HG+E+ D + MV WASG ++ + GD R ++ +DLL QI
Sbjct: 868 LEGDHGLEVTAVPDGGMAWMVHRWASGERLDAVLRGQEMAAGDFVRRCKQIVDLLGQIAD 927
Query: 123 -LPDVD-QRLQKNAVDA 137
PD + +R + A+D
Sbjct: 928 AAPDTELRRTARKAIDG 944
>gi|357039702|ref|ZP_09101494.1| DSH domain protein [Desulfotomaculum gibsoniae DSM 7213]
gi|355357508|gb|EHG05281.1| DSH domain protein [Desulfotomaculum gibsoniae DSM 7213]
Length = 516
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 68 GVEIPCCLDSQFSG-MVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDV 126
GV C+ S G + E+W +G T+ E+ C L +GD+ +RR ID+L QI +
Sbjct: 433 GVPEHLCVWSPLPGPLSESWYNGATFEELQKRCNLHEGDIFSTIRREIDVLRQIERAAGE 492
Query: 127 DQRLQKNAVDASNVMDRPPISEL 149
D+ ++ D N +DR ++ L
Sbjct: 493 DRSFRQVMHDIRNTLDRDEVAVL 515
>gi|347756371|ref|YP_004863934.1| Superfamily II RNA helicase [Candidatus Chloracidobacterium
thermophilum B]
gi|347588888|gb|AEP13417.1| Superfamily II RNA helicase [Candidatus Chloracidobacterium
thermophilum B]
Length = 542
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 67/149 (44%), Gaps = 9/149 (6%)
Query: 2 VLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSYIY-EPSTTVINVINVLDEHRSSF 60
++R IL P LAA+C ++ +E + L++ Y P V + +
Sbjct: 401 LIRAGILDVESPRHLAALCGAIAAEDREFPLYEETRAEYLRPLRQVRGIAYAI------- 453
Query: 61 LELQEKHGVEIPCCLDSQFSGMVEAWASG-LTWREMMMDCALDDGDLARLLRRTIDLLAQ 119
++Q ++ +D ++ WA G TW ++ +GD+ARLL RT DLL Q
Sbjct: 454 ADVQARYDNYCTMTIDYDAGRLLWTWADGQCTWEALLAMTEAVEGDVARLLLRTSDLLGQ 513
Query: 120 IPKLPDVDQRLQKNAVDASNVMDRPPISE 148
+ L +L + A A + RPP+ +
Sbjct: 514 LAGLSASHPKLAEQARAAIYAIRRPPVED 542
>gi|296269793|ref|YP_003652425.1| DSH domain-containing protein [Thermobispora bispora DSM 43833]
gi|296092580|gb|ADG88532.1| DSH domain protein [Thermobispora bispora DSM 43833]
Length = 904
Score = 49.7 bits (117), Expect = 5e-04, Method: Composition-based stats.
Identities = 39/147 (26%), Positives = 67/147 (45%), Gaps = 15/147 (10%)
Query: 3 LRNKILLDLKPAQLAAVCASLVSE------GIKVRLWKNNSYIYEPSTTVINVINVLDEH 56
LR I L PA+LAA +SLV E G + RL P+ V + + +
Sbjct: 758 LRAGIWERLDPAELAACVSSLVYESRQPDDGRRPRL---------PAGPVRDALAEMTRL 808
Query: 57 RSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDL 116
E++++HG+ D F WA G +++ + L GD R +++ +DL
Sbjct: 809 WGELEEIEQEHGLSFTREPDLGFVWAAYRWAKGCGLEDVLTETDLAAGDFVRWVKQILDL 868
Query: 117 LAQIPKLPDVDQRLQKNAVDASNVMDR 143
L Q+ ++ +++NA+ A + M R
Sbjct: 869 LDQLKEVAPEGGTVRQNAIKAMDAMRR 895
>gi|302847839|ref|XP_002955453.1| hypothetical protein VOLCADRAFT_119055 [Volvox carteri f.
nagariensis]
gi|300259295|gb|EFJ43524.1| hypothetical protein VOLCADRAFT_119055 [Volvox carteri f.
nagariensis]
Length = 823
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 36/56 (64%)
Query: 94 EMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNAVDASNVMDRPPISEL 149
++M D LDDGD+ARLL RTIDLL Q+ + L+ A +A MDR P++EL
Sbjct: 766 KIMSDSNLDDGDMARLLIRTIDLLKQLQHNSHLLPELRDAAAEALRGMDRKPVAEL 821
>gi|379058684|ref|ZP_09849210.1| DEAD/DEAH box helicase [Serinicoccus profundi MCCC 1A05965]
Length = 961
Score = 49.3 bits (116), Expect = 5e-04, Method: Composition-based stats.
Identities = 40/121 (33%), Positives = 52/121 (42%), Gaps = 10/121 (8%)
Query: 3 LRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVINVLDEHRSSFLE 62
LR L PA LAAV ++LV E +P T + V L E S + E
Sbjct: 818 LRRGTWRRLTPADLAAVVSTLVHEA-------RGDEPGDPPTPSVEVAEALGEMGSIWTE 870
Query: 63 LQE---KHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQ 119
+Q H + LD S MV WASG E++ L GD R ++ +DLL Q
Sbjct: 871 VQAGKLAHNLTGDRELDPGISWMVHRWASGRGLEEVLRSGDLSAGDFVRRAKQVVDLLGQ 930
Query: 120 I 120
I
Sbjct: 931 I 931
>gi|403737667|ref|ZP_10950395.1| putative helicase [Austwickia chelonae NBRC 105200]
gi|403191779|dbj|GAB77165.1| putative helicase [Austwickia chelonae NBRC 105200]
Length = 946
Score = 48.9 bits (115), Expect = 8e-04, Method: Composition-based stats.
Identities = 38/147 (25%), Positives = 66/147 (44%), Gaps = 9/147 (6%)
Query: 3 LRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVINVLDEHRSSFLE 62
LR+ + L L PA+LAA+ ++LV E R +NN + P+ V + + + S +
Sbjct: 801 LRHDLWLTLSPAELAAMVSTLVHEP---RREENNPFPTMPTAAVGEAYDAMLDLWSGLDD 857
Query: 63 LQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQI-- 120
G+ D+ S ++ WA+G ++ L GD R ++ +DLL QI
Sbjct: 858 RLTARGLPTTAPPDAGLSAIMHRWATGSRLESVLDGSDLAPGDFVRRCKQVVDLLDQIAQ 917
Query: 121 ----PKLPDVDQRLQKNAVDASNVMDR 143
P+L + +R + + DR
Sbjct: 918 AAPRPELAESARRAGSSVLRGVVAADR 944
>gi|408500978|ref|YP_006864897.1| helicase [Bifidobacterium asteroides PRL2011]
gi|408465802|gb|AFU71331.1| helicase [Bifidobacterium asteroides PRL2011]
Length = 854
Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 71/152 (46%), Gaps = 16/152 (10%)
Query: 2 VLRNKILLDLKPAQLAAVCASLVSE---GIKVRLWKNNSYIYEPSTTVINVINVLDEHRS 58
+L IL DL+PA+LAA + LV E G+ + + Y ++ +++ +
Sbjct: 700 ILDRGILNDLEPAELAAAVSGLVYESRRGVGEQPGERAGY------RAHRLVEAMEDMKR 753
Query: 59 SFLELQEK---HGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTID 115
+ ++QE+ G+E+P LD + WA G + ++ D L GD R +R D
Sbjct: 754 QWSQVQERCDQAGLELPPELDFGLGPTIYDWACGDSLTAILRDSDLTAGDFVRNAKRLSD 813
Query: 116 LLAQI----PKLPDVDQRLQKNAVDASNVMDR 143
+L QI P L L + A A++ ++R
Sbjct: 814 VLTQIVQVEPYLGRGGHHLARTASIAADQVNR 845
>gi|377574835|ref|ZP_09803845.1| putative ATP-dependent helicase [Mobilicoccus pelagius NBRC 104925]
gi|377536344|dbj|GAB49010.1| putative ATP-dependent helicase [Mobilicoccus pelagius NBRC 104925]
Length = 997
Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 41/137 (29%), Positives = 63/137 (45%), Gaps = 5/137 (3%)
Query: 3 LRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVINVLDEHRSSFLE 62
LR+ + L PA+LAA L+ E R + + P+ T+ V + S +
Sbjct: 852 LRDGLFSGLTPAELAAAVTCLIHEP---RRDEGDLLPQMPTHTLDEVHTKMVRLWSGIED 908
Query: 63 LQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPK 122
+ HG+ D + +V WASG + ++ D L GD R ++T+DLL QI
Sbjct: 909 AENDHGLPTTAYPDPGLAPLVYRWASGRSLGVVLRDSDLAAGDFVRRCKQTVDLLDQIAD 968
Query: 123 L-PDVDQRL-QKNAVDA 137
+ PD L + AVDA
Sbjct: 969 VAPDAKVSLAARKAVDA 985
>gi|224002745|ref|XP_002291044.1| hypothetical protein THAPSDRAFT_262824 [Thalassiosira pseudonana
CCMP1335]
gi|220972820|gb|EED91151.1| hypothetical protein THAPSDRAFT_262824, partial [Thalassiosira
pseudonana CCMP1335]
Length = 1128
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 41/86 (47%), Gaps = 19/86 (22%)
Query: 82 MVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLP----------DVDQRLQ 131
+V AWASG +W+E++ GDL R L R +D L QI LP V RL+
Sbjct: 1004 VVTAWASGASWKEVLEMSGSAPGDLVRTLSRALDALRQIANLPFVPARGFEGDGVTVRLE 1063
Query: 132 KNAVD---------ASNVMDRPPISE 148
N V A+N MDR P+ +
Sbjct: 1064 ANGVHPRIRALCRAAANDMDRYPVKD 1089
>gi|325290288|ref|YP_004266469.1| DEAD/DEAH box helicase [Syntrophobotulus glycolicus DSM 8271]
gi|324965689|gb|ADY56468.1| DEAD/DEAH box helicase domain protein [Syntrophobotulus glycolicus
DSM 8271]
Length = 749
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 27/75 (36%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Query: 75 LDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNA 134
+S+ +G+ AW+ G + ++ C LD+GD+ + RRTIDLL QI K D QK
Sbjct: 674 FESRVAGITYAWSKGAEFSQIHHLCNLDEGDIIAVYRRTIDLLRQI-KEASTDPLFQKRI 732
Query: 135 VDASNVMDRPPISEL 149
+DR S L
Sbjct: 733 SGCMKKLDRDEASIL 747
>gi|402573154|ref|YP_006622497.1| superfamily II RNA helicase [Desulfosporosinus meridiei DSM 13257]
gi|402254351|gb|AFQ44626.1| superfamily II RNA helicase [Desulfosporosinus meridiei DSM 13257]
Length = 749
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 30/46 (65%)
Query: 75 LDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQI 120
D + +G+ AW+ G T+ E+ C LD+GD+ + RRTIDL+ Q+
Sbjct: 674 FDPRVAGITHAWSQGSTFIEVQAMCNLDEGDIISVFRRTIDLMRQM 719
>gi|408419914|ref|YP_006761328.1| DNA/RNA helicase HelY [Desulfobacula toluolica Tol2]
gi|405107127|emb|CCK80624.1| HelY: DNA/RNA helicase [Desulfobacula toluolica Tol2]
Length = 707
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 73/146 (50%), Gaps = 8/146 (5%)
Query: 3 LRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSYIYE--PSTTVINVINVLDEHRSSF 60
+R +L PA LA++ S V+E + + ++ + P +++ E +
Sbjct: 563 IRENLLPQNDPALLASIIGSFVNE----KEFSDDPLYNQALPKRLKEAFLDIRQELKPFA 618
Query: 61 LELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQI 120
L+L +K G + P L Q S M+ WA W E++ +GD ARL+ RT + L QI
Sbjct: 619 LKLLKK-GFDAPN-LFIQPSLMLYLWAHDKPWEELITQSDFAEGDFARLVLRTSENLRQI 676
Query: 121 PKLPDVDQRLQKNAVDASNVMDRPPI 146
KL + ++ K A +A++++ + P+
Sbjct: 677 SKLKETFPQIAKTAREATDLILKEPV 702
>gi|453365973|dbj|GAC78307.1| putative helicase [Gordonia malaquae NBRC 108250]
Length = 919
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 56/129 (43%), Gaps = 18/129 (13%)
Query: 3 LRNKILLDLKPAQLAAVCASLV------SEGIKVRLWKNNSYIYEPSTTVINVINVLDEH 56
+R + L P+ LAAV +S++ S G V N + + T I V +
Sbjct: 767 IRAGVWNGLSPSDLAAVVSSVLFVSRRESYGAGVDSMPGNPAMRDALTGTIQVWEATNR- 825
Query: 57 RSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCA-----LDDGDLARLLR 111
+Q++HGV D+ F V AWASG + RE + L GD R R
Sbjct: 826 ------VQDRHGVVQTREPDTGFCAAVSAWASGRSLREALGAAGSQGNLLSPGDFVRWNR 879
Query: 112 RTIDLLAQI 120
+ IDLL QI
Sbjct: 880 QVIDLLEQI 888
>gi|354557751|ref|ZP_08977009.1| DEAD/DEAH box helicase domain protein [Desulfitobacterium
metallireducens DSM 15288]
gi|353550545|gb|EHC19982.1| DEAD/DEAH box helicase domain protein [Desulfitobacterium
metallireducens DSM 15288]
Length = 750
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 44/74 (59%), Gaps = 8/74 (10%)
Query: 66 KHGVEIPCCLDS-----QFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQI 120
+H ++ C +D+ + S + +W+ GL++ E+ C LD+GD+ + RRTIDLL Q+
Sbjct: 661 EHYIQSVCGVDTVRYDPRVSIITYSWSKGLSFIEIQQLCNLDEGDIISVFRRTIDLLRQM 720
Query: 121 PKL---PDVDQRLQ 131
P ++QRL+
Sbjct: 721 RDAVTEPRLNQRLK 734
>gi|269925598|ref|YP_003322221.1| DEAD/DEAH box helicase [Thermobaculum terrenum ATCC BAA-798]
gi|269789258|gb|ACZ41399.1| DEAD/DEAH box helicase domain protein [Thermobaculum terrenum ATCC
BAA-798]
Length = 952
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 47/94 (50%), Gaps = 11/94 (11%)
Query: 46 VINVINVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGD 105
+IN+ LD+ + L + + GV+I + F GM+ AW +G + +++ + +GD
Sbjct: 821 LINLRRQLDDLETRILRAESRAGVQISQGYNPYFFGMMRAWCNGASLSQILDKVDIGEGD 880
Query: 106 LARLLRRTIDLLAQI-----------PKLPDVDQ 128
L +T+DL+ Q+ P LP +DQ
Sbjct: 881 LVMTFNKTLDLIRQVRDMLVQADPGSPLLPKLDQ 914
>gi|403511534|ref|YP_006643172.1| DEAD/DEAH box helicase family protein [Nocardiopsis alba ATCC
BAA-2165]
gi|402799821|gb|AFR07231.1| DEAD/DEAH box helicase family protein [Nocardiopsis alba ATCC
BAA-2165]
Length = 947
Score = 46.2 bits (108), Expect = 0.004, Method: Composition-based stats.
Identities = 37/141 (26%), Positives = 61/141 (43%), Gaps = 5/141 (3%)
Query: 3 LRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVINVLDEHRSSFLE 62
LR + DL P +AAV ASLV E + ++ Y P V + + E
Sbjct: 803 LRRGVWKDLTPVDMAAVAASLVYEARR----GDDPYPRVPEGRVEEALQEMLRLWGELNE 858
Query: 63 LQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPK 122
++ +H V D F WA G ++ + GD R + +D+L QI
Sbjct: 859 VETRHRVSFLRQPDLGFVWTAHRWARGDRLDAILSRTEMTAGDFVRTAKMLVDMLGQI-A 917
Query: 123 LPDVDQRLQKNAVDASNVMDR 143
+ DQ+++ NA A++++ R
Sbjct: 918 VAATDQQVRSNARKAADLVRR 938
>gi|373252718|ref|ZP_09540836.1| superfamily II RNA helicase [Nesterenkonia sp. F]
Length = 990
Score = 46.2 bits (108), Expect = 0.004, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 43/81 (53%)
Query: 63 LQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPK 122
L+++H V+ + + + AWASG + RE +MD L GD R +++ID+L Q+ +
Sbjct: 874 LEKQHHVDPTPAPEMGLAPPMHAWASGRSLREALMDSPLAAGDFVRWAKQSIDVLDQLGR 933
Query: 123 LPDVDQRLQKNAVDASNVMDR 143
P +L +A ++ R
Sbjct: 934 APHTAAKLAARCQEAVELIGR 954
>gi|345862325|ref|ZP_08814554.1| type III restriction enzyme, res subunit [Desulfosporosinus sp. OT]
gi|344324612|gb|EGW36161.1| type III restriction enzyme, res subunit [Desulfosporosinus sp. OT]
Length = 749
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 30/45 (66%)
Query: 76 DSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQI 120
D + +G+ AW+ G T+ E+ C LD+GD+ + RRTIDL+ Q+
Sbjct: 675 DPRVAGITYAWSQGQTFVEVQALCNLDEGDIISVFRRTIDLMRQM 719
>gi|374581749|ref|ZP_09654843.1| superfamily II RNA helicase [Desulfosporosinus youngiae DSM 17734]
gi|374417831|gb|EHQ90266.1| superfamily II RNA helicase [Desulfosporosinus youngiae DSM 17734]
Length = 748
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 29/45 (64%)
Query: 76 DSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQI 120
D + +G+ AW+ G T+ E+ C LD+GD+ + RR IDL+ Q+
Sbjct: 674 DPRVAGITHAWSQGSTFAEVQALCNLDEGDIISVFRRAIDLMRQM 718
>gi|441520053|ref|ZP_21001722.1| putative helicase, partial [Gordonia sihwensis NBRC 108236]
gi|441460175|dbj|GAC59683.1| putative helicase, partial [Gordonia sihwensis NBRC 108236]
Length = 622
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 65/152 (42%), Gaps = 18/152 (11%)
Query: 3 LRNKILLDLKPAQLAAVCASLVSEGIK------VRLWKNNSYIYEPSTTVINVINVLDEH 56
+R I L P LAAV +S+V E + V + + E ++V ++
Sbjct: 470 IRAGIWDRLSPPDLAAVVSSMVYESRRDSYSGGVDSMPGDRALRESLLATVDVWQATND- 528
Query: 57 RSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCA-----LDDGDLARLLR 111
+QE+HGV D+ F + AWASG + RE ++ + L GD R R
Sbjct: 529 ------VQERHGVVQTREPDTGFCIAIGAWASGRSLREALLAASERGQLLSPGDFVRWNR 582
Query: 112 RTIDLLAQIPKLPDVDQRLQKNAVDASNVMDR 143
+ IDLL QI D D L A A + R
Sbjct: 583 QVIDLLEQIRGSVDPDTGLAVAAARAVKGVKR 614
>gi|359772275|ref|ZP_09275709.1| putative helicase, partial [Gordonia effusa NBRC 100432]
gi|359310683|dbj|GAB18487.1| putative helicase, partial [Gordonia effusa NBRC 100432]
Length = 478
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 63/148 (42%), Gaps = 11/148 (7%)
Query: 3 LRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVINVLDEHR--SSF 60
LR I DL P +LAAV A+LV E R + P + + + D R
Sbjct: 327 LREGIWDDLPPHELAAVVAALVFE---ARRDTYSGVDAMPGSAGLRAA-LADTVRIWQDI 382
Query: 61 LELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCA-----LDDGDLARLLRRTID 115
E++ +H + D+ FS V WASG + E ++ L GD R R+ +D
Sbjct: 383 TEVESRHRLTPTREPDTGFSVAVALWASGRSLTEALVAAGDRGNLLSPGDFVRWNRQVVD 442
Query: 116 LLAQIPKLPDVDQRLQKNAVDASNVMDR 143
LL Q+ K D RL A A + R
Sbjct: 443 LLEQVAKSVDSKTRLAATARSAIGAIRR 470
>gi|224370610|ref|YP_002604774.1| RNA helicase of the superfamily II [Desulfobacterium autotrophicum
HRM2]
gi|223693327|gb|ACN16610.1| RNA helicase of the superfamily II [Desulfobacterium autotrophicum
HRM2]
Length = 742
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 68/149 (45%), Gaps = 14/149 (9%)
Query: 3 LRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSYIYE--PSTTVINVINV---LDEHR 57
LR +L + P LAAV AS VSE + +++ S P + + + L
Sbjct: 572 LRLGLLPERDPVMLAAVMASFVSE----KEFEDESMERRMLPKRVIRQFLTLRKGLKPFA 627
Query: 58 SSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLL 117
S +EL G P L Q + ++ AWA G W + A +GDLARL+ RT + L
Sbjct: 628 SKLMEL----GFNAPF-LYLQPASVMLAWAGGEPWESTLKRTAFAEGDLARLILRTAENL 682
Query: 118 AQIPKLPDVDQRLQKNAVDASNVMDRPPI 146
Q+ + + A +A +++ R P+
Sbjct: 683 RQLAGVKQAFPVIAATAFEAMDLILREPV 711
>gi|326382289|ref|ZP_08203981.1| DEAD/DEAH box helicase domain-containing protein [Gordonia
neofelifaecis NRRL B-59395]
gi|326199019|gb|EGD56201.1| DEAD/DEAH box helicase domain-containing protein [Gordonia
neofelifaecis NRRL B-59395]
Length = 913
Score = 44.3 bits (103), Expect = 0.015, Method: Composition-based stats.
Identities = 37/129 (28%), Positives = 58/129 (44%), Gaps = 18/129 (13%)
Query: 3 LRNKILLDLKPAQLAAVCASLVSEGIK------VRLWKNNSYIYEPSTTVINVINVLDEH 56
+R I L P LAAV +++V E + + N + + + V + +E
Sbjct: 761 IRAGIWDRLSPPDLAAVVSAMVYESRRDSYTGGIDSMPGNKALRDALVATVEVWHATNE- 819
Query: 57 RSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCA-----LDDGDLARLLR 111
+QE+HGV D+ F + AWASG + RE ++ + L GD R R
Sbjct: 820 ------VQERHGVVQTREPDTGFCVAIGAWASGRSLREALLAASERGQMLSPGDFVRWNR 873
Query: 112 RTIDLLAQI 120
+ IDLL Q+
Sbjct: 874 QVIDLLEQV 882
>gi|410866605|ref|YP_006981216.1| Superfamily II RNA helicase [Propionibacterium acidipropionici ATCC
4875]
gi|410823246|gb|AFV89861.1| Superfamily II RNA helicase [Propionibacterium acidipropionici ATCC
4875]
Length = 919
Score = 44.3 bits (103), Expect = 0.017, Method: Composition-based stats.
Identities = 39/131 (29%), Positives = 63/131 (48%), Gaps = 13/131 (9%)
Query: 7 ILLDLKPAQLAAVCASLVSEGIKV-RLWKNNSYIYEPSTTVINVINVLDEHRSSFLELQE 65
+L L PAQLAAV ++L+ E R + ++ +P+ ++ L R+ L+
Sbjct: 776 VLDGLDPAQLAAVLSTLIFESRPADRRHQYGHWLPDPACE--ESVSRLRAVRARVGRLER 833
Query: 66 KHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDD----GDLARLLRRTIDLLAQIP 121
H +E P LD+ F+ + WASG +D L++ GD R +R+ DL QI
Sbjct: 834 DHRLERPRDLDTGFAEIAYQWASGAA-----LDTVLEEGSSAGDFVRQMRQLADLAGQIA 888
Query: 122 KLPDVDQRLQK 132
VD+ L +
Sbjct: 889 G-AGVDEELAR 898
>gi|389580181|ref|ZP_10170208.1| superfamily II RNA helicase [Desulfobacter postgatei 2ac9]
gi|389401816|gb|EIM64038.1| superfamily II RNA helicase [Desulfobacter postgatei 2ac9]
Length = 731
Score = 44.3 bits (103), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 66/146 (45%), Gaps = 6/146 (4%)
Query: 2 VLRNKILLDLKPAQLAAVCASLVSEG-IKVRLWKNNSYIYEPSTTVINVINVLDEHRSSF 60
LR+K+L + PA LAA+ A+ V+E K + N + S + + +L F
Sbjct: 587 TLRDKLLPERDPALLAAMMATFVNEKEFKDDMLFNTAL----SKQLKDAFLLLRRGLKPF 642
Query: 61 LELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQI 120
+ G P L Q + +V AWA W E+M +GD ARL+ RT + L Q+
Sbjct: 643 AMKMLQSGFPAPN-LFIQPAALVYAWAHDTPWDELMRKSDFAEGDFARLVLRTSENLRQM 701
Query: 121 PKLPDVDQRLQKNAVDASNVMDRPPI 146
L K A + +++ + P+
Sbjct: 702 THLHQDFPVFAKTAAQSIDMILKTPV 727
>gi|270283967|ref|ZP_06193769.1| putative helicase [Bifidobacterium gallicum DSM 20093]
gi|270277807|gb|EFA23661.1| putative helicase [Bifidobacterium gallicum DSM 20093]
Length = 826
Score = 44.3 bits (103), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 55/118 (46%), Gaps = 3/118 (2%)
Query: 5 NKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVINVLDEHRSSFLELQ 64
N +L DL A+LA V +S+V E + + Y V + + L S L
Sbjct: 674 NGVLEDLTAAELAGVLSSIVYEARRGAGGEPRYYPGGAHGRVADAVTELKLLDSRLNVLC 733
Query: 65 EKHGV--EIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQI 120
E G+ ++P LD S +V WASG + E++ D L GD R +R D+L QI
Sbjct: 734 EDAGMTRDLPM-LDFGISDIVYEWASGDSLAEVLHDSELTGGDFVRNAKRLADVLQQI 790
>gi|374995961|ref|YP_004971460.1| superfamily II RNA helicase [Desulfosporosinus orientis DSM 765]
gi|357214327|gb|AET68945.1| superfamily II RNA helicase [Desulfosporosinus orientis DSM 765]
Length = 749
Score = 43.9 bits (102), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 28/46 (60%)
Query: 75 LDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQI 120
D + + AW+ G T+ E+ C LD+GD+ + RRTIDL+ Q+
Sbjct: 674 FDPRVGVITHAWSQGSTFSEVQTLCNLDEGDIISVFRRTIDLMRQM 719
>gi|298245680|ref|ZP_06969486.1| DEAD/DEAH box helicase domain protein [Ktedonobacter racemifer DSM
44963]
gi|297553161|gb|EFH87026.1| DEAD/DEAH box helicase domain protein [Ktedonobacter racemifer DSM
44963]
Length = 882
Score = 43.9 bits (102), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 56/120 (46%), Gaps = 6/120 (5%)
Query: 1 MVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVINVLDEHRSSF 60
M++R + + P ++A +C+ K RL N + ++ VL
Sbjct: 660 MIMRG-VFDGMSPNEVAEICSWFTFSNDK-RLHNRNVLASRLARVRRDLYQVLQHVHG-- 715
Query: 61 LELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQI 120
++E+ G+ + +F G+ AW+ G++ ++ L +GD+ LL +TIDLL Q+
Sbjct: 716 --IEERAGINFSPSIQPEFHGVAFAWSRGMSLNALLNRIELAEGDILMLLNQTIDLLQQV 773
>gi|392375262|ref|YP_003207095.1| helicase [Candidatus Methylomirabilis oxyfera]
gi|258592955|emb|CBE69264.1| putative helicase [Candidatus Methylomirabilis oxyfera]
Length = 839
Score = 43.5 bits (101), Expect = 0.026, Method: Composition-based stats.
Identities = 35/146 (23%), Positives = 65/146 (44%), Gaps = 3/146 (2%)
Query: 7 ILLDLKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVINVLDEHRSSFLELQEK 66
+L L P +LA + + LV E ++ + + + + L+E ++Q
Sbjct: 693 LLQGLVPEELAGLLSCLVEEPRATEQAAAKLFLRDQAH-LRRRVKTLEELSQEVDKVQRS 751
Query: 67 HGVEIPCCLDSQFSGMVEAWASGLT-WREMM-MDCALDDGDLARLLRRTIDLLAQIPKLP 124
+ VE+P + + + W SG W ++ +GDL R RR IDL Q+ + P
Sbjct: 752 YQVELPVSMHTTYLAATHRWVSGEDDWLALVEQSFGGHEGDLIRAFRRLIDLCRQLEESP 811
Query: 125 DVDQRLQKNAVDASNVMDRPPISELA 150
++ L + A+ ++DR + E A
Sbjct: 812 ELPADLTRTLSRATEMLDRGIVLESA 837
>gi|297626525|ref|YP_003688288.1| Superfamily II RNA helicase [Propionibacterium freudenreichii
subsp. shermanii CIRM-BIA1]
gi|296922290|emb|CBL56862.1| Superfamily II RNA helicase [Propionibacterium freudenreichii
subsp. shermanii CIRM-BIA1]
Length = 933
Score = 43.5 bits (101), Expect = 0.028, Method: Composition-based stats.
Identities = 36/125 (28%), Positives = 55/125 (44%), Gaps = 10/125 (8%)
Query: 3 LRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVINVLDEHRSSFLE 62
+R K+ +L QLAAV +++V E + P T L RS + E
Sbjct: 782 IREKVFAELNGPQLAAVLSTMVYEARATDTGGHRM----PDDTSARAERAL---RSVWRE 834
Query: 63 L---QEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQ 119
+ + H VE LD F+ WASG + +++ + L GD R R+ +DL +Q
Sbjct: 835 VGLVERDHRVERQRDLDIGFADAAAQWASGASLADILGEFGLTAGDFVRWTRQVVDLASQ 894
Query: 120 IPKLP 124
I P
Sbjct: 895 ISAAP 899
>gi|431794079|ref|YP_007220984.1| superfamily II RNA helicase [Desulfitobacterium dichloroeliminans
LMG P-21439]
gi|430784305|gb|AGA69588.1| superfamily II RNA helicase [Desulfitobacterium dichloroeliminans
LMG P-21439]
Length = 753
Score = 43.1 bits (100), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 3/59 (5%)
Query: 76 DSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIP---KLPDVDQRLQ 131
D + S +V +W+ GL++ E+ LD+GD+ ++RRTIDLL Q+ K P + QRL+
Sbjct: 679 DPRVSVIVYSWSQGLSFPEVQRLSNLDEGDIISVIRRTIDLLRQMRDAVKEPALLQRLK 737
>gi|158521045|ref|YP_001528915.1| DEAD/DEAH box helicase domain-containing protein [Desulfococcus
oleovorans Hxd3]
gi|158509871|gb|ABW66838.1| DEAD/DEAH box helicase domain protein [Desulfococcus oleovorans
Hxd3]
Length = 709
Score = 43.1 bits (100), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 47/98 (47%), Gaps = 1/98 (1%)
Query: 49 VINVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLAR 108
V N L + F +K G E P L + + WA+ + W +++ ++GDLA
Sbjct: 612 VFNSLKHAMTPFTRHMKKRGFE-PTDLFLAPAVTMHQWATDMDWEDVVFRTGSEEGDLAN 670
Query: 109 LLRRTIDLLAQIPKLPDVDQRLQKNAVDASNVMDRPPI 146
L+ R D L I L D+ R ++A + +++ R P+
Sbjct: 671 LVFRAADNLRHIATLTDIFPRAAQSAREGVDLIVREPL 708
>gi|147678352|ref|YP_001212567.1| superfamily II RNA helicase [Pelotomaculum thermopropionicum SI]
gi|146274449|dbj|BAF60198.1| superfamily II RNA helicase, superfamily II RNA helicase
[Pelotomaculum thermopropionicum SI]
Length = 514
Score = 43.1 bits (100), Expect = 0.040, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 66 KHGVEIPCCLDSQFSG-MVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLP 124
K GV C+ S F G + AW +G ++ E++ +L GDL + RR IDLL QI +
Sbjct: 429 KMGVPDRFCIWSDFPGPLAYAWYNGASFSELLEMSSLQPGDLFSIFRREIDLLRQIERAA 488
Query: 125 DVDQRLQKNAVDASNVMDRPPIS 147
+ L + A +DR ++
Sbjct: 489 SGNPALAQKARLIRERLDRDEVA 511
>gi|167629121|ref|YP_001679620.1| dead/deah box helicase [Heliobacterium modesticaldum Ice1]
gi|167591861|gb|ABZ83609.1| dead/deah box helicase, putative [Heliobacterium modesticaldum
Ice1]
Length = 788
Score = 42.7 bits (99), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 33/143 (23%), Positives = 66/143 (46%), Gaps = 13/143 (9%)
Query: 7 ILLDLKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVI--NVINVLDEHRSSFLELQ 64
+ D+ QLAA+ +V E + +EP T N+ L++ R +F ++
Sbjct: 652 LFHDVTETQLAALIGGVVQEESR----------FEPHVTGASRNMGGWLEKARDTFFRVR 701
Query: 65 EKHGVEIPC-CLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKL 123
+ +P S+ +++ + W E + + +GD L RRT+D+L Q+ +
Sbjct: 702 DLVPAGLPQPHFRSEGCYLIKTLIETVNWTEYLTLVNMAEGDAIALARRTMDVLRQLARA 761
Query: 124 PDVDQRLQKNAVDASNVMDRPPI 146
+ D+ L+K A +++ RP +
Sbjct: 762 VEEDEALRKKVGRAQDLVARPEV 784
>gi|325963293|ref|YP_004241199.1| superfamily II RNA helicase [Arthrobacter phenanthrenivorans Sphe3]
gi|323469380|gb|ADX73065.1| superfamily II RNA helicase [Arthrobacter phenanthrenivorans Sphe3]
Length = 977
Score = 42.4 bits (98), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 75/149 (50%), Gaps = 19/149 (12%)
Query: 3 LRNKILLDLKPAQLAAVCASLVSE------GIKVRLWKNNSYIYEPSTTVINVINVLDEH 56
LR DL A++AA+ + LV + G++ R+ PS ++ ++++
Sbjct: 831 LRLGAFDDLDAAEVAALASVLVYQAKREDRGLRPRM---------PSVSLETSVDIVVRE 881
Query: 57 RSSFLELQEKHGVEIPCCLDSQFSGM--VEAWASGLTWREMMMDCALDDGDLARLLRRTI 114
S+ +++E++ ++P + + + V WA G ++++ L GD R +++ +
Sbjct: 882 WSALEDVEEEN--KLPLTGEPELGLIWPVYKWARGRHLQDVLSGTDLAAGDFVRWVKQVV 939
Query: 115 DLLAQIPKLPDVDQRLQKNAVDASNVMDR 143
DLL Q+ K+P +D RL + +A ++ R
Sbjct: 940 DLLDQLAKIPGLDPRLARLCTEAIKLIRR 968
>gi|392394063|ref|YP_006430665.1| superfamily II RNA helicase [Desulfitobacterium dehalogenans ATCC
51507]
gi|390525141|gb|AFM00872.1| superfamily II RNA helicase [Desulfitobacterium dehalogenans ATCC
51507]
Length = 750
Score = 42.4 bits (98), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 38/59 (64%), Gaps = 3/59 (5%)
Query: 76 DSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIP---KLPDVDQRLQ 131
D + + +V +W+ GL++ E+ LD+GD+ ++RRTIDLL Q+ K P + QRL+
Sbjct: 676 DPRVTVIVYSWSQGLSFAEVQRLSNLDEGDIISVIRRTIDLLRQMRDAVKEPALLQRLK 734
>gi|359777026|ref|ZP_09280322.1| putative ATP-dependent helicase [Arthrobacter globiformis NBRC
12137]
gi|359305623|dbj|GAB14151.1| putative ATP-dependent helicase [Arthrobacter globiformis NBRC
12137]
Length = 964
Score = 42.4 bits (98), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 35/151 (23%), Positives = 74/151 (49%), Gaps = 21/151 (13%)
Query: 2 VLRNKILLDLKPAQLAAVCASLVSE------GIKVRLWKNNSYIYEPSTTVINVINVLDE 55
LR DL ++AA + LV + G++ R+ PS ++ ++++
Sbjct: 817 ALRQGAFDDLDAVEVAAFASVLVYQAKREDRGLRPRM---------PSVSLETAVDIVVR 867
Query: 56 HRSSFLELQEKHGVEIPCCLDSQFSGMV---EAWASGLTWREMMMDCALDDGDLARLLRR 112
S+ +++E++ ++P + + G++ WA G ++++ L GD R +++
Sbjct: 868 EWSALEDVEEQN--KLPLTGEPEL-GLIWPMYKWARGRHLQDVLSGTDLAAGDFVRWVKQ 924
Query: 113 TIDLLAQIPKLPDVDQRLQKNAVDASNVMDR 143
IDLL Q+ K+P +D RL + +A ++ R
Sbjct: 925 VIDLLDQLAKIPGLDPRLARLCAEAIKLIRR 955
>gi|378548640|ref|ZP_09823856.1| hypothetical protein CCH26_01075 [Citricoccus sp. CH26A]
Length = 1028
Score = 42.4 bits (98), Expect = 0.072, Method: Composition-based stats.
Identities = 34/127 (26%), Positives = 55/127 (43%), Gaps = 9/127 (7%)
Query: 1 MVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVINVLDEHRSSF 60
++L + + +L P +LA A LV + K + + P + VLD +
Sbjct: 877 LLLEDGLARELDPEELAGFAALLVYQA------KGDETVGIPQMPTARLQEVLDRTGEHW 930
Query: 61 LELQ-EKHGVEIPCCL--DSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLL 117
ELQ + G ++ D+ + WA G R+ + L GD R R+ IDLL
Sbjct: 931 YELQLAERGAQLEPTPEPDAGLVWPIHRWARGRNLRDALKGTDLAAGDFVRWARQVIDLL 990
Query: 118 AQIPKLP 124
Q+ K+P
Sbjct: 991 DQLSKVP 997
>gi|417556685|ref|ZP_12207742.1| DEAD/DEAH box helicase [Gardnerella vaginalis 315-A]
gi|333602373|gb|EGL13803.1| DEAD/DEAH box helicase [Gardnerella vaginalis 315-A]
Length = 879
Score = 42.0 bits (97), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 7/73 (9%)
Query: 82 MVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPK-------LPDVDQRLQKNA 134
M+ WA G +++ + + GD R +R IDLL Q+ LP+VD L NA
Sbjct: 803 MIYDWAQGADLLDILQNTDITGGDFVRFAKRLIDLLNQLAVASEYLKILPNVDDSLAHNA 862
Query: 135 VDASNVMDRPPIS 147
+A+ +++R ++
Sbjct: 863 YEAAKLINRGVVA 875
>gi|119963790|ref|YP_947928.1| ATP-dependent RNA helicase [Arthrobacter aurescens TC1]
gi|119950649|gb|ABM09560.1| putative ATP-dependent RNA helicase [Arthrobacter aurescens TC1]
Length = 991
Score = 42.0 bits (97), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 32/139 (23%), Positives = 68/139 (48%), Gaps = 19/139 (13%)
Query: 2 VLRNKILLDLKPAQLAAVCASLVSE------GIKVRLWKNNSYIYEPSTTVINVINVLDE 55
+R + DL A+LA+ ++LV + G++ ++ PS ++ + I+++
Sbjct: 844 TVRRGAINDLDAAELASFASTLVYQAKREDRGLRPKM---------PSVSLESAIDIVIR 894
Query: 56 HRSSFLELQEKHGVEIPCCLDSQFSGM--VEAWASGLTWREMMMDCALDDGDLARLLRRT 113
S + +E++ +P + + M + WA G ++++ L GD R ++
Sbjct: 895 EWSQLEDTEERN--RLPLTGEPELGLMWPMYKWAKGRHLQDVLSGTDLAAGDFVRWAKQV 952
Query: 114 IDLLAQIPKLPDVDQRLQK 132
+DLL Q+ K+P +D RL +
Sbjct: 953 VDLLDQLAKIPQLDPRLAR 971
>gi|385801688|ref|YP_005838091.1| type III restriction enzyme, res subunit [Gardnerella vaginalis
HMP9231]
gi|333394149|gb|AEF32067.1| type III restriction enzyme, res subunit [Gardnerella vaginalis
HMP9231]
Length = 879
Score = 42.0 bits (97), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 7/73 (9%)
Query: 82 MVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPK-------LPDVDQRLQKNA 134
M+ WA G +++ + + GD R +R IDLL Q+ LP+VD L NA
Sbjct: 803 MIYDWAQGADLLDILQNTDITGGDFVRFAKRLIDLLNQLAVASEYLKILPNVDDSLAHNA 862
Query: 135 VDASNVMDRPPIS 147
+A+ +++R ++
Sbjct: 863 YEAAKLINRGVVA 875
>gi|415702258|ref|ZP_11458480.1| helicase [Gardnerella vaginalis 284V]
gi|388053587|gb|EIK76567.1| helicase [Gardnerella vaginalis 284V]
Length = 883
Score = 42.0 bits (97), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 7/73 (9%)
Query: 82 MVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPK-------LPDVDQRLQKNA 134
M+ WA G +++ + + GD R +R IDLL Q+ LP+VD L NA
Sbjct: 807 MIYDWAQGADLLDILQNTDITGGDFVRFAKRLIDLLNQLAVASEYLKILPNVDDSLAHNA 866
Query: 135 VDASNVMDRPPIS 147
+A+ +++R ++
Sbjct: 867 YEAAKLINRGVVA 879
>gi|403527393|ref|YP_006662280.1| helicase HelY [Arthrobacter sp. Rue61a]
gi|403229820|gb|AFR29242.1| putative helicase HelY [Arthrobacter sp. Rue61a]
Length = 991
Score = 42.0 bits (97), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 32/139 (23%), Positives = 68/139 (48%), Gaps = 19/139 (13%)
Query: 2 VLRNKILLDLKPAQLAAVCASLVSE------GIKVRLWKNNSYIYEPSTTVINVINVLDE 55
+R + DL A+LA+ ++LV + G++ ++ PS ++ + I+++
Sbjct: 844 TVRRGAINDLDAAELASFASTLVYQAKREDRGLRPKM---------PSVSLESAIDIVIR 894
Query: 56 HRSSFLELQEKHGVEIPCCLDSQFSGM--VEAWASGLTWREMMMDCALDDGDLARLLRRT 113
S + +E++ +P + + M + WA G ++++ L GD R ++
Sbjct: 895 EWSQLEDTEERN--RLPLTGEPELGLMWPMYKWAKGRHLQDVLSGTDLAAGDFVRWAKQV 952
Query: 114 IDLLAQIPKLPDVDQRLQK 132
+DLL Q+ K+P +D RL +
Sbjct: 953 VDLLDQLAKIPQLDPRLAR 971
>gi|308235031|ref|ZP_07665768.1| DEAD/DEAH box helicase [Gardnerella vaginalis ATCC 14018 = JCM
11026]
gi|311114706|ref|YP_003985927.1| helicase [Gardnerella vaginalis ATCC 14019]
gi|310946200|gb|ADP38904.1| helicase [Gardnerella vaginalis ATCC 14019]
Length = 883
Score = 42.0 bits (97), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 7/73 (9%)
Query: 82 MVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPK-------LPDVDQRLQKNA 134
M+ WA G +++ + + GD R +R IDLL Q+ LP+VD L NA
Sbjct: 807 MIYDWAQGADLLDILQNTDITGGDFVRFAKRLIDLLNQLAVASEYLKILPNVDDSLAHNA 866
Query: 135 VDASNVMDRPPIS 147
+A+ +++R ++
Sbjct: 867 YEAAKLINRGVVA 879
>gi|415707209|ref|ZP_11462056.1| helicase [Gardnerella vaginalis 0288E]
gi|388054209|gb|EIK77154.1| helicase [Gardnerella vaginalis 0288E]
Length = 883
Score = 42.0 bits (97), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 7/73 (9%)
Query: 82 MVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPK-------LPDVDQRLQKNA 134
M+ WA G +++ + + GD R +R IDLL Q+ LP+VD L NA
Sbjct: 807 MIYDWAQGADLLDILQNTDITGGDFVRFAKRLIDLLNQLAVASEYLKILPNVDDSLAHNA 866
Query: 135 VDASNVMDRPPIS 147
+A+ +++R ++
Sbjct: 867 YEAAKLINRGVVA 879
>gi|340360038|ref|ZP_08682509.1| DEAD/DEAH box family ATP-dependent RNA helicase [Actinomyces sp.
oral taxon 448 str. F0400]
gi|339883805|gb|EGQ73637.1| DEAD/DEAH box family ATP-dependent RNA helicase [Actinomyces sp.
oral taxon 448 str. F0400]
Length = 976
Score = 42.0 bits (97), Expect = 0.083, Method: Composition-based stats.
Identities = 38/151 (25%), Positives = 64/151 (42%), Gaps = 25/151 (16%)
Query: 3 LRNKILLDLKPAQLAAVCASLVSE--------GIKVRLWKNNSYIYEPSTTVINVINVLD 54
LR+++ L A LAA ++ V E G+ V + + IN L+
Sbjct: 820 LRHELWDGLASADLAAAVSACVYEPRLAVQSIGLPVAPSSRLGAVLREEIRLSRAINNLE 879
Query: 55 EHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTI 114
S + ++ G E +G V AWA G E++ DC L GD R ++ +
Sbjct: 880 ----SLVRIESSSGAE------PALAGAVRAWAEGADLAEVLQDCELTAGDFVRWSKQLL 929
Query: 115 DLLAQIPKL-------PDVDQRLQKNAVDAS 138
D+L Q+ +L PD + ++ +V A+
Sbjct: 930 DVLGQLARLTMTEESAPDRRRAIKTLSVSAA 960
>gi|410656991|ref|YP_006909362.1| putative DNA helicase [Dehalobacter sp. DCA]
gi|410660029|ref|YP_006912400.1| putative DNA helicase [Dehalobacter sp. CF]
gi|409019346|gb|AFV01377.1| putative DNA helicase [Dehalobacter sp. DCA]
gi|409022385|gb|AFV04415.1| putative DNA helicase [Dehalobacter sp. CF]
Length = 751
Score = 42.0 bits (97), Expect = 0.084, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Query: 75 LDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNA 134
+S+ + + W+ G E+ + C LD+GD+ +LRRTIDLL Q+ + DQ L++
Sbjct: 675 FESKAAVLAYYWSKGAALIELQLLCTLDEGDIIAVLRRTIDLLRQM-REAVTDQSLRERF 733
Query: 135 VDASNVMDR 143
+DR
Sbjct: 734 SVCIKKLDR 742
>gi|415711435|ref|ZP_11464172.1| helicase [Gardnerella vaginalis 55152]
gi|388058269|gb|EIK81066.1| helicase [Gardnerella vaginalis 55152]
Length = 878
Score = 42.0 bits (97), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 7/73 (9%)
Query: 82 MVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPK-------LPDVDQRLQKNA 134
M+ WA G +++ + + GD R +R IDLL Q+ LP+VD L NA
Sbjct: 802 MIYDWAQGADLLDILQNTDITGGDFVRFAKRLIDLLNQLAVASEYLKILPNVDDSLAHNA 861
Query: 135 VDASNVMDRPPIS 147
+A+ +++R ++
Sbjct: 862 YEAAKLINRGVVA 874
>gi|415716479|ref|ZP_11466471.1| helicase [Gardnerella vaginalis 1400E]
gi|388057096|gb|EIK79929.1| helicase [Gardnerella vaginalis 1400E]
Length = 883
Score = 42.0 bits (97), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 7/73 (9%)
Query: 82 MVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPK-------LPDVDQRLQKNA 134
M+ WA G +++ + + GD R +R IDLL Q+ LP+VD L NA
Sbjct: 807 MIYDWAQGADLLDILQNTDITGGDFVRFAKRLIDLLNQLAVASEYLKILPNVDDSLAHNA 866
Query: 135 VDASNVMDRPPIS 147
+A+ +++R ++
Sbjct: 867 YEAAKLINRGVVA 879
>gi|269977354|ref|ZP_06184327.1| probable helicase HelY [Mobiluncus mulieris 28-1]
gi|307700945|ref|ZP_07637970.1| DEAD/DEAH box helicase [Mobiluncus mulieris FB024-16]
gi|269934657|gb|EEZ91218.1| probable helicase HelY [Mobiluncus mulieris 28-1]
gi|307613940|gb|EFN93184.1| DEAD/DEAH box helicase [Mobiluncus mulieris FB024-16]
Length = 810
Score = 42.0 bits (97), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 60/132 (45%), Gaps = 11/132 (8%)
Query: 7 ILLDLKPAQLAAVCASLVSE---GIKVRLWKNNSYIYEPSTTVINVINVLDEHRSSFLEL 63
+ DL ++LA A +SE G RL N+ S + + + +L
Sbjct: 670 LFTDLTVSELAGALAVCISENRGGGPSRLIPANA-----SLRLATALEAMARLNFDLAQL 724
Query: 64 QEKHGVEIPCCLDSQFSGMVEAWASGLTWRE-MMMDCALDDGDLARLLRRTIDLLAQIPK 122
QE H +E LD+ + V AWA G T E + + + GD R++R+ IDL Q+ +
Sbjct: 725 QESHLLEPYQPLDTGEALGVVAWAQGKTLTECLELGGGVGAGDFVRMVRQVIDLSNQLRQ 784
Query: 123 L--PDVDQRLQK 132
+ P QR Q+
Sbjct: 785 VVEPGSSQRFQQ 796
>gi|227875392|ref|ZP_03993533.1| ATP-dependent RNA helicase [Mobiluncus mulieris ATCC 35243]
gi|227843946|gb|EEJ54114.1| ATP-dependent RNA helicase [Mobiluncus mulieris ATCC 35243]
Length = 810
Score = 42.0 bits (97), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 60/132 (45%), Gaps = 11/132 (8%)
Query: 7 ILLDLKPAQLAAVCASLVSE---GIKVRLWKNNSYIYEPSTTVINVINVLDEHRSSFLEL 63
+ DL ++LA A +SE G RL N+ S + + + +L
Sbjct: 670 LFTDLTVSELAGALAVCISENRGGGPSRLIPANA-----SLRLATALEAMARLNFDLAQL 724
Query: 64 QEKHGVEIPCCLDSQFSGMVEAWASGLTWRE-MMMDCALDDGDLARLLRRTIDLLAQIPK 122
QE H +E LD+ + V AWA G T E + + + GD R++R+ IDL Q+ +
Sbjct: 725 QESHLLEPYQPLDTGEALGVVAWAQGKTLTECLELGGGVGAGDFVRMVRQVIDLSNQLRQ 784
Query: 123 L--PDVDQRLQK 132
+ P QR Q+
Sbjct: 785 VVEPGSSQRFQQ 796
>gi|306818705|ref|ZP_07452427.1| ATP-dependent RNA helicase [Mobiluncus mulieris ATCC 35239]
gi|304648391|gb|EFM45694.1| ATP-dependent RNA helicase [Mobiluncus mulieris ATCC 35239]
Length = 810
Score = 42.0 bits (97), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 60/132 (45%), Gaps = 11/132 (8%)
Query: 7 ILLDLKPAQLAAVCASLVSE---GIKVRLWKNNSYIYEPSTTVINVINVLDEHRSSFLEL 63
+ DL ++LA A +SE G RL N+ S + + + +L
Sbjct: 670 LFTDLTVSELAGALAVCISENRGGGPSRLIPANA-----SLRLATALEAMARLNFDLAQL 724
Query: 64 QEKHGVEIPCCLDSQFSGMVEAWASGLTWRE-MMMDCALDDGDLARLLRRTIDLLAQIPK 122
QE H +E LD+ + V AWA G T E + + + GD R++R+ IDL Q+ +
Sbjct: 725 QESHLLEPYQPLDTGEALGVVAWAQGKTLTECLELGGGVGAGDFVRMVRQVIDLSNQLRQ 784
Query: 123 L--PDVDQRLQK 132
+ P QR Q+
Sbjct: 785 VVEPGSSQRFQQ 796
>gi|116670732|ref|YP_831665.1| DEAD/DEAH box helicase [Arthrobacter sp. FB24]
gi|116610841|gb|ABK03565.1| DEAD/DEAH box helicase domain protein [Arthrobacter sp. FB24]
Length = 964
Score = 42.0 bits (97), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 68/139 (48%), Gaps = 21/139 (15%)
Query: 3 LRNKILLDLKPAQLAAVCASLVSE------GIKVRLWKNNSYIYEPSTTVINVINVLDEH 56
LR DL ++AA+ + LV + G++ R+ PS ++ ++++
Sbjct: 818 LRQGAFSDLDATEVAALASVLVYQAKREERGLRPRM---------PSVSLETAVDIVVRE 868
Query: 57 RSSFLELQEKHGVEIPCCLDSQFSGMV---EAWASGLTWREMMMDCALDDGDLARLLRRT 113
S + +E++ ++P + + G+V WA G +E++ L GD R +++
Sbjct: 869 WSVLEDAEEEN--KLPLTGEPEL-GLVWPIFKWAKGKHLQEVLNGTDLAAGDFVRWVKQV 925
Query: 114 IDLLAQIPKLPDVDQRLQK 132
IDLL Q+ K+P +D RL +
Sbjct: 926 IDLLDQLAKIPGLDPRLSR 944
>gi|317124910|ref|YP_004099022.1| DEAD/DEAH box helicase [Intrasporangium calvum DSM 43043]
gi|315588998|gb|ADU48295.1| DEAD/DEAH box helicase domain protein [Intrasporangium calvum DSM
43043]
Length = 959
Score = 41.6 bits (96), Expect = 0.097, Method: Composition-based stats.
Identities = 38/142 (26%), Positives = 62/142 (43%), Gaps = 16/142 (11%)
Query: 3 LRNKILLDLKPAQLAAVCASLVSE------GIKVRLWKNNSYIYEPSTTVINVINVLDEH 56
LR + L P LAAV + L+ E G+ R W N+ + E ++ + + L++
Sbjct: 815 LREGVWRQLDPPSLAAVVSMLIHEPRREDGGLAPR-WPNDD-VREAHDRMLAIWSDLEDA 872
Query: 57 RSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDL 116
+ + + D + V WASG E++ L GD R ++ IDL
Sbjct: 873 EGAL-------ALPMTGAPDPGIAWAVHRWASGRPLEEVLRGTELAAGDFVRRCKQIIDL 925
Query: 117 LAQIPKLPDVD-QRLQKNAVDA 137
L Q+ D + QR+ + A DA
Sbjct: 926 LGQLTDAGDRELQRVARKASDA 947
>gi|415705273|ref|ZP_11460544.1| helicase [Gardnerella vaginalis 75712]
gi|388051995|gb|EIK75019.1| helicase [Gardnerella vaginalis 75712]
Length = 879
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 7/73 (9%)
Query: 82 MVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPK-------LPDVDQRLQKNA 134
M+ WA G ++ + + GD R +R IDLL Q+ LP+VD L NA
Sbjct: 803 MIYDWAQGADLLNILQNTDITGGDFVRFAKRLIDLLNQLAVASEYLKILPNVDDSLAHNA 862
Query: 135 VDASNVMDRPPIS 147
+A+ +++R ++
Sbjct: 863 YEAAKLINRGVVA 875
>gi|350569109|ref|ZP_08937506.1| superfamily II RNA helicase [Propionibacterium avidum ATCC 25577]
gi|348660687|gb|EGY77394.1| superfamily II RNA helicase [Propionibacterium avidum ATCC 25577]
Length = 919
Score = 41.2 bits (95), Expect = 0.13, Method: Composition-based stats.
Identities = 34/121 (28%), Positives = 56/121 (46%), Gaps = 11/121 (9%)
Query: 3 LRNKILLDLKPAQLAAVCASLVSE---GIKVRLWKNNSYIYEPSTTVINVINVLDEHRSS 59
+R + L QLAAV +++V E G + L + + E + + + + R+
Sbjct: 775 IRRGVFDKLDYPQLAAVLSTIVHESRPGDRGHLHRMPDHGSESAESQLRAV------RAE 828
Query: 60 FLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQ 119
L+ H +E P LD F+ M AWA+G ++ D + GD R +R+ DL Q
Sbjct: 829 IGLLERDHRIERPRDLDIGFAEMAYAWAAGAGLETVLDD--MSAGDFVRRVRQVCDLAGQ 886
Query: 120 I 120
I
Sbjct: 887 I 887
>gi|116750790|ref|YP_847477.1| DEAD/DEAH box helicase [Syntrophobacter fumaroxidans MPOB]
gi|116699854|gb|ABK19042.1| DEAD/DEAH box helicase domain protein [Syntrophobacter fumaroxidans
MPOB]
Length = 843
Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 34/67 (50%)
Query: 80 SGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNAVDASN 139
+ V WA G +W+ + +D+GDLA L+ RT D L QI L + L A A
Sbjct: 774 TATVYHWAGGSSWQTVREISGMDEGDLAMLILRTADHLRQIESLSETHPSLAAAARRAIE 833
Query: 140 VMDRPPI 146
++ R P+
Sbjct: 834 LILREPV 840
>gi|386866978|ref|YP_006279972.1| helicase [Bifidobacterium animalis subsp. animalis ATCC 25527]
gi|385701061|gb|AFI63009.1| putative helicase [Bifidobacterium animalis subsp. animalis ATCC
25527]
Length = 829
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 52/117 (44%), Gaps = 1/117 (0%)
Query: 5 NKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVINVLDEHRSSFLELQ 64
+ I DL +LAAV +SL+ E + + Y P V+ N L + + L
Sbjct: 677 HGIFDDLNAPELAAVMSSLLYEPRRGEGGEPRRYPGGPRGRVMQAANALRDMDGQIIALC 736
Query: 65 EKHGVEIPCC-LDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQI 120
E +G+E LD ++ WA G + E++ + GD R +R D+L QI
Sbjct: 737 EANGLENYLQPLDFGIVDLMYNWAYGDSLSEVLEHSDMTGGDFVRTAKRIADVLQQI 793
>gi|384193835|ref|YP_005579581.1| helicase [Bifidobacterium animalis subsp. lactis BLC1]
gi|345282694|gb|AEN76548.1| helicase [Bifidobacterium animalis subsp. lactis BLC1]
Length = 863
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 52/117 (44%), Gaps = 1/117 (0%)
Query: 5 NKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVINVLDEHRSSFLELQ 64
+ I DL +LAAV +SL+ E + + Y P V+ N L + + L
Sbjct: 711 HGIFDDLNAPELAAVMSSLLYEPRRGEGGEPRRYPGGPRGRVMQAANALRDMDGQIIALC 770
Query: 65 EKHGVEIPCC-LDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQI 120
E +G+E LD ++ WA G + E++ + GD R +R D+L QI
Sbjct: 771 EANGLENYLQPLDFGIVDLMYNWAYGDSLSEVLEHSDMTGGDFVRTAKRIADVLQQI 827
>gi|183601660|ref|ZP_02963030.1| probable helicase [Bifidobacterium animalis subsp. lactis HN019]
gi|241190841|ref|YP_002968235.1| helicase [Bifidobacterium animalis subsp. lactis Bl-04]
gi|241196247|ref|YP_002969802.1| helicase [Bifidobacterium animalis subsp. lactis DSM 10140]
gi|384195399|ref|YP_005581144.1| helicase [Bifidobacterium animalis subsp. lactis V9]
gi|387820708|ref|YP_006300751.1| helicase [Bifidobacterium animalis subsp. lactis B420]
gi|387822382|ref|YP_006302331.1| helicase [Bifidobacterium animalis subsp. lactis Bi-07]
gi|423679368|ref|ZP_17654244.1| helicase [Bifidobacterium animalis subsp. lactis BS 01]
gi|183219266|gb|EDT89907.1| probable helicase [Bifidobacterium animalis subsp. lactis HN019]
gi|240249233|gb|ACS46173.1| helicase [Bifidobacterium animalis subsp. lactis Bl-04]
gi|240250801|gb|ACS47740.1| helicase [Bifidobacterium animalis subsp. lactis DSM 10140]
gi|295793830|gb|ADG33365.1| helicase [Bifidobacterium animalis subsp. lactis V9]
gi|366041479|gb|EHN17974.1| helicase [Bifidobacterium animalis subsp. lactis BS 01]
gi|386653409|gb|AFJ16539.1| putative helicase [Bifidobacterium animalis subsp. lactis B420]
gi|386654990|gb|AFJ18119.1| putative helicase [Bifidobacterium animalis subsp. lactis Bi-07]
Length = 829
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 52/117 (44%), Gaps = 1/117 (0%)
Query: 5 NKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVINVLDEHRSSFLELQ 64
+ I DL +LAAV +SL+ E + + Y P V+ N L + + L
Sbjct: 677 HGIFDDLNAPELAAVMSSLLYEPRRGEGGEPRRYPGGPRGRVMQAANALRDMDGQIIALC 736
Query: 65 EKHGVEIPCC-LDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQI 120
E +G+E LD ++ WA G + E++ + GD R +R D+L QI
Sbjct: 737 EANGLENYLQPLDFGIVDLMYNWAYGDSLSEVLEHSDMTGGDFVRTAKRIADVLQQI 793
>gi|219683807|ref|YP_002470190.1| helicase [Bifidobacterium animalis subsp. lactis AD011]
gi|384191089|ref|YP_005576837.1| HelY [Bifidobacterium animalis subsp. lactis BB-12]
gi|384192234|ref|YP_005577981.1| Hydrolase acting on acid anhydrides in phosphorous-containing
anhydrides [Bifidobacterium animalis subsp. lactis CNCM
I-2494]
gi|219621457|gb|ACL29614.1| probable helicase [Bifidobacterium animalis subsp. lactis AD011]
gi|289178581|gb|ADC85827.1| HelY [Bifidobacterium animalis subsp. lactis BB-12]
gi|340364971|gb|AEK30262.1| Hydrolase acting on acid anhydrides in phosphorous-containing
anhydrides [Bifidobacterium animalis subsp. lactis CNCM
I-2494]
Length = 875
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 52/117 (44%), Gaps = 1/117 (0%)
Query: 5 NKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVINVLDEHRSSFLELQ 64
+ I DL +LAAV +SL+ E + + Y P V+ N L + + L
Sbjct: 723 HGIFDDLNAPELAAVMSSLLYEPRRGEGGEPRRYPGGPRGRVMQAANALRDMDGQIIALC 782
Query: 65 EKHGVEIPCC-LDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQI 120
E +G+E LD ++ WA G + E++ + GD R +R D+L QI
Sbjct: 783 EANGLENYLQPLDFGIVDLMYNWAYGDSLSEVLEHSDMTGGDFVRTAKRIADVLQQI 839
>gi|357588678|ref|ZP_09127344.1| ATP-dependent DNA helicase [Corynebacterium nuruki S6-4]
Length = 896
Score = 41.2 bits (95), Expect = 0.15, Method: Composition-based stats.
Identities = 31/123 (25%), Positives = 51/123 (41%), Gaps = 5/123 (4%)
Query: 3 LRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVINVLDEHRSSFLE 62
LR + L PA+LAA ++ V E K ++ S + P+ +++ +N +
Sbjct: 742 LRRGVWDGLDPAELAAAASTCVFENRKETRPEDRSDVGVPTEALVDAVNAVQRIHRELTS 801
Query: 63 LQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMM-----DCALDDGDLARLLRRTIDLL 117
+E+HG+ + F + W +G + L GD R R IDLL
Sbjct: 802 DEERHGLPQTREPQTGFVTALHQWTAGAPLEYCIRAAEASGAELTPGDFVRWCNRVIDLL 861
Query: 118 AQI 120
QI
Sbjct: 862 GQI 864
>gi|85858541|ref|YP_460743.1| ATP-dependent DNA helicase [Syntrophus aciditrophicus SB]
gi|85721632|gb|ABC76575.1| ATP-dependent DNA helicase [Syntrophus aciditrophicus SB]
Length = 700
Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 34/67 (50%)
Query: 80 SGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNAVDASN 139
S +V WASG W E++ + DG+L+ L+ R D L QI L D + A A +
Sbjct: 628 SAVVYEWASGEDWDEIIKRTGIADGELSMLVLRVADNLRQIVSLRDTHPEMAHLAARARD 687
Query: 140 VMDRPPI 146
+ R P+
Sbjct: 688 AILREPV 694
>gi|423074707|ref|ZP_17063432.1| DEAD/DEAH box helicase [Desulfitobacterium hafniense DP7]
gi|361854396|gb|EHL06467.1| DEAD/DEAH box helicase [Desulfitobacterium hafniense DP7]
Length = 762
Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 38/59 (64%), Gaps = 3/59 (5%)
Query: 76 DSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIP---KLPDVDQRLQ 131
D + + +V +W+ G+++ E+ LD+GD+ ++RRTIDLL Q+ K P + QRL+
Sbjct: 688 DPRVAVIVYSWSQGVSFAEVQRLSNLDEGDIISVIRRTIDLLRQMRDAVKEPALLQRLK 746
>gi|219669097|ref|YP_002459532.1| DEAD/DEAH box helicase [Desulfitobacterium hafniense DCB-2]
gi|219539357|gb|ACL21096.1| DEAD/DEAH box helicase domain protein [Desulfitobacterium hafniense
DCB-2]
Length = 762
Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 38/59 (64%), Gaps = 3/59 (5%)
Query: 76 DSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIP---KLPDVDQRLQ 131
D + + +V +W+ G+++ E+ LD+GD+ ++RRTIDLL Q+ K P + QRL+
Sbjct: 688 DPRVAVIVYSWSQGVSFAEVQRLSNLDEGDIISVIRRTIDLLRQMRDAVKEPALLQRLK 746
>gi|392408495|ref|YP_006445102.1| superfamily II RNA helicase [Desulfomonile tiedjei DSM 6799]
gi|390621631|gb|AFM22838.1| superfamily II RNA helicase [Desulfomonile tiedjei DSM 6799]
Length = 696
Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 58/124 (46%), Gaps = 13/124 (10%)
Query: 2 VLRNKILLDLKPAQLAAVCASLVSEG-----IKVRLWKNNSYIYEPSTTVINVINVLDEH 56
++R + DL QLAA+ A V + I LW+ + +++ +++ + L E
Sbjct: 554 LIREREFSDLNSKQLAALMAPFVMDKDKEIVISRELWQRTNPLWKRFRSMLQKLKPLAE- 612
Query: 57 RSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDL 116
L G ++P + + V WA + W E++ + D+GDLA L+ RT D
Sbjct: 613 ------LLINRGFDVPNIMFWP-AAAVFLWAEEVEWGELIENVDADEGDLAMLILRTADH 665
Query: 117 LAQI 120
L Q+
Sbjct: 666 LRQL 669
>gi|89894658|ref|YP_518145.1| hypothetical protein DSY1912 [Desulfitobacterium hafniense Y51]
gi|89334106|dbj|BAE83701.1| hypothetical protein [Desulfitobacterium hafniense Y51]
Length = 750
Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 38/59 (64%), Gaps = 3/59 (5%)
Query: 76 DSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIP---KLPDVDQRLQ 131
D + + +V +W+ G+++ E+ LD+GD+ ++RRTIDLL Q+ K P + QRL+
Sbjct: 676 DPRVAVIVYSWSQGVSFAEVQRLSNLDEGDIISVIRRTIDLLRQMRDAVKEPALLQRLK 734
>gi|225352111|ref|ZP_03743134.1| hypothetical protein BIFPSEUDO_03725 [Bifidobacterium
pseudocatenulatum DSM 20438 = JCM 1200]
gi|225157358|gb|EEG70697.1| hypothetical protein BIFPSEUDO_03725 [Bifidobacterium
pseudocatenulatum DSM 20438 = JCM 1200]
Length = 866
Score = 40.8 bits (94), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 60/141 (42%), Gaps = 4/141 (2%)
Query: 11 LKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVINVLDEHRSSFLELQEKHGVE 70
L +LA+V ASLV E + + Y V L +S L E H +E
Sbjct: 721 LNACELASVVASLVFEARRGGGGEPRRYPGGIQGNVAVCAAQLKGVHASIAMLCEDHMLE 780
Query: 71 IPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQI----PKLPDV 126
P LD + +V WA G + +++ L GD R +R D+L QI P L D
Sbjct: 781 EPRQLDFGITDIVYDWAQGESLSQVLYGTDLTGGDFVRNGKRLADVLQQIAVAGPYLADR 840
Query: 127 DQRLQKNAVDASNVMDRPPIS 147
+ L A A + ++R ++
Sbjct: 841 AETLAPVAKQAYDRINRGIVA 861
>gi|415721039|ref|ZP_11468283.1| helicase [Gardnerella vaginalis 00703Bmash]
gi|388061300|gb|EIK83957.1| helicase [Gardnerella vaginalis 00703Bmash]
Length = 860
Score = 40.8 bits (94), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 62/148 (41%), Gaps = 7/148 (4%)
Query: 7 ILLDLKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVINVLDEHRSSFLELQEK 66
I DL P +L + +SLV E + Y V N ++ L E +
Sbjct: 709 IFNDLTPIELLSCVSSLVYESRGPVGLEPRRYPGGLDGAVFNTVSRLKELFMRISNMCLN 768
Query: 67 HGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPK---- 122
+ ++ LD ++ WA G +++ + + GD R +R IDLL Q+
Sbjct: 769 NHLDALKSLDFGAVDLIYDWARGADLLDILQNTDITGGDFVRFAKRLIDLLNQLAVLSDY 828
Query: 123 ---LPDVDQRLQKNAVDASNVMDRPPIS 147
LP+VD L A +A +++R ++
Sbjct: 829 LRILPNVDDSLAHKAYEAVQIINRGVVA 856
>gi|417970759|ref|ZP_12611690.1| hypothetical protein CgS9114_07015 [Corynebacterium glutamicum
S9114]
gi|344045055|gb|EGV40729.1| hypothetical protein CgS9114_07015 [Corynebacterium glutamicum
S9114]
Length = 929
Score = 40.8 bits (94), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 62/142 (43%), Gaps = 11/142 (7%)
Query: 3 LRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVINVLDEHRSSFLE 62
L+ I +L PA+LA V + E + + + + + +N ++ +E
Sbjct: 782 LKRGIWDNLDPAELAGVVSMCTFENRR----ETGGEAQAVTEAMADSMNSVERIWGELVE 837
Query: 63 LQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCA-----LDDGDLARLLRRTIDLL 117
+ +H + I ++ F+ + WASG M A L GD R R+ IDLL
Sbjct: 838 DERRHRLPITRQPEAGFATAIHQWASGAPLGYCMAAAAENGAELTPGDFVRWCRQVIDLL 897
Query: 118 AQIPKLPDVDQ--RLQKNAVDA 137
Q+ K +D+ R + A+DA
Sbjct: 898 EQVAKTAYLDETTRNARQAIDA 919
>gi|415724577|ref|ZP_11469955.1| helicase [Gardnerella vaginalis 00703C2mash]
gi|388062373|gb|EIK84990.1| helicase [Gardnerella vaginalis 00703C2mash]
Length = 860
Score = 40.8 bits (94), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 62/148 (41%), Gaps = 7/148 (4%)
Query: 7 ILLDLKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVINVLDEHRSSFLELQEK 66
I DL P +L + +SLV E + Y V N ++ L E +
Sbjct: 709 IFNDLTPIELLSCVSSLVYESRGPVGSEPRRYPGGLDGAVFNTVSRLKELFMRISNMCLN 768
Query: 67 HGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPK---- 122
+ ++ LD ++ WA G +++ + + GD R +R IDLL Q+
Sbjct: 769 NHLDALKSLDFGAVDLIYDWAQGADLLDILQNTDITGGDFVRFAKRLIDLLNQLAVLSDY 828
Query: 123 ---LPDVDQRLQKNAVDASNVMDRPPIS 147
LP+VD L A +A +++R ++
Sbjct: 829 LRILPNVDDSLAHKAYEAVQIINRGVVA 856
>gi|418244352|ref|ZP_12870772.1| hypothetical protein KIQ_02566 [Corynebacterium glutamicum ATCC
14067]
gi|354511589|gb|EHE84498.1| hypothetical protein KIQ_02566 [Corynebacterium glutamicum ATCC
14067]
Length = 929
Score = 40.4 bits (93), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 62/142 (43%), Gaps = 11/142 (7%)
Query: 3 LRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVINVLDEHRSSFLE 62
L+ I +L PA+LA V + E + + + + + +N ++ +E
Sbjct: 782 LKRGIWDNLDPAELAGVVSMCTFENRR----ETGGEAQAVTEAMADSMNSVERIWGELVE 837
Query: 63 LQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCA-----LDDGDLARLLRRTIDLL 117
+ +H + I ++ F+ + WASG M A L GD R R+ IDLL
Sbjct: 838 DERRHRLPITRQPEAGFATAIHQWASGAPLGYCMAAAAENGAELTPGDFVRWCRQVIDLL 897
Query: 118 AQIPKLPDVDQ--RLQKNAVDA 137
Q+ K +D+ R + A+DA
Sbjct: 898 EQVAKTAYLDETTRNARQAIDA 919
>gi|340794380|ref|YP_004759843.1| ATP-dependent DNA helicase [Corynebacterium variabile DSM 44702]
gi|340534290|gb|AEK36770.1| ATP-dependent DNA helicase [Corynebacterium variabile DSM 44702]
Length = 874
Score = 40.4 bits (93), Expect = 0.22, Method: Composition-based stats.
Identities = 32/123 (26%), Positives = 56/123 (45%), Gaps = 7/123 (5%)
Query: 3 LRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVINVLDEHRSSFLE 62
LR I DL PA+LAA +++V E + ++ + + P+ + + + +
Sbjct: 723 LRRGIWDDLDPAELAAAVSTVVFENRRETTGRHTTEV--PTEALAAAVTAVGRIHGELVS 780
Query: 63 LQEKHGVEIPCCLDSQFSGMVEAWASG--LTWREMMMDCA---LDDGDLARLLRRTIDLL 117
+E+HG+ + + F+ + W +G L + + A L GD R R IDLL
Sbjct: 781 DEERHGLPLTREPQTGFATALHQWTAGAPLDYCLRAAEAAGAQLTPGDFVRWCTRVIDLL 840
Query: 118 AQI 120
QI
Sbjct: 841 EQI 843
>gi|302344032|ref|YP_003808561.1| DEAD/DEAH box helicase [Desulfarculus baarsii DSM 2075]
gi|301640645|gb|ADK85967.1| DEAD/DEAH box helicase domain protein [Desulfarculus baarsii DSM
2075]
Length = 911
Score = 40.4 bits (93), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Query: 60 FLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQ 119
LE + G P S M AWA G + +++ +GDLA L+ RT D L Q
Sbjct: 822 LLERLRQWGFHTPALPMPAASAMF-AWALGQEFADVVALYGGAEGDLAALIYRTADNLRQ 880
Query: 120 IPKLPDVDQRLQKNAVDASNVMDRPPI 146
I L D L +A +A ++ RPP+
Sbjct: 881 IASLHDTHPALSASAREAVELLLRPPV 907
>gi|229817648|ref|ZP_04447930.1| hypothetical protein BIFANG_02919 [Bifidobacterium angulatum DSM
20098 = JCM 7096]
gi|229785437|gb|EEP21551.1| hypothetical protein BIFANG_02919 [Bifidobacterium angulatum DSM
20098 = JCM 7096]
Length = 858
Score = 40.4 bits (93), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 61/144 (42%), Gaps = 10/144 (6%)
Query: 11 LKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVINVLDEHRSSFLELQ---EKH 67
L PA LAAV +SLV E R Y P + + E ++ E+ E H
Sbjct: 713 LPPAGLAAVLSSLVYE---ARRGSGGEPRYYPGSMHGPIAVAARELKTIHAEVSDCCEAH 769
Query: 68 GVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQI----PKL 123
G+ +D ++ WA G + E++ L GD R +R D+L QI P L
Sbjct: 770 GMNPLPGIDFGILDIMYEWADGRSLSEVLRGTELTGGDFVRNAKRLSDMLQQIAVAEPYL 829
Query: 124 PDVDQRLQKNAVDASNVMDRPPIS 147
L A +A+ +++R ++
Sbjct: 830 GKDGASLASRAREAAELVNRGVVA 853
>gi|19552703|ref|NP_600705.1| helicase [Corynebacterium glutamicum ATCC 13032]
gi|62390371|ref|YP_225773.1| superfamily II DNA/RNA helicase [Corynebacterium glutamicum ATCC
13032]
gi|21324257|dbj|BAB98882.1| Superfamily II DNA and RNA helicases [Corynebacterium glutamicum
ATCC 13032]
gi|41325708|emb|CAF21497.1| Superfamily II DNA and RNA helicase [Corynebacterium glutamicum
ATCC 13032]
gi|385143613|emb|CCH24652.1| putative helicase [Corynebacterium glutamicum K051]
Length = 929
Score = 40.4 bits (93), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 61/142 (42%), Gaps = 11/142 (7%)
Query: 3 LRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVINVLDEHRSSFLE 62
L+ I +L PA+LA V + E + + + + + +N ++ +E
Sbjct: 782 LKRGIWDNLDPAELAGVVSMCTFENRR----ETGGEAQAVTEAMADSMNSVERIWGELVE 837
Query: 63 LQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCA-----LDDGDLARLLRRTIDLL 117
+ +H + I ++ F+ + WASG M A L GD R R+ IDLL
Sbjct: 838 DERRHRLPITRQPEAGFATAIHQWASGAPLGYCMAAAAENGAELTPGDFVRWCRQVIDLL 897
Query: 118 AQIPKLPDVDQ--RLQKNAVDA 137
Q+ K D+ R + A+DA
Sbjct: 898 EQVAKTAYFDETTRNARQAIDA 919
>gi|145295622|ref|YP_001138443.1| hypothetical protein cgR_1549 [Corynebacterium glutamicum R]
gi|140845542|dbj|BAF54541.1| hypothetical protein [Corynebacterium glutamicum R]
Length = 929
Score = 40.4 bits (93), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 61/142 (42%), Gaps = 11/142 (7%)
Query: 3 LRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVINVLDEHRSSFLE 62
L+ I +L PA+LA V + E + + + + + +N ++ +E
Sbjct: 782 LKRGIWDNLDPAELAGVVSMCTFENRR----ETGGEAQAVTEAMADSMNSVERIWGELVE 837
Query: 63 LQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCA-----LDDGDLARLLRRTIDLL 117
+ +H + I ++ F+ + WASG M A L GD R R+ IDLL
Sbjct: 838 DERRHRLPITRQPEAGFATAIHQWASGAPLGYCMAAAAENGAELTPGDFVRWCRQVIDLL 897
Query: 118 AQIPKLPDVDQ--RLQKNAVDA 137
Q+ K D+ R + A+DA
Sbjct: 898 EQVAKTAYFDETTRNARQAIDA 919
>gi|336117414|ref|YP_004572182.1| ATP-dependent helicase [Microlunatus phosphovorus NM-1]
gi|334685194|dbj|BAK34779.1| putative ATP-dependent helicase [Microlunatus phosphovorus NM-1]
Length = 949
Score = 40.4 bits (93), Expect = 0.27, Method: Composition-based stats.
Identities = 33/121 (27%), Positives = 54/121 (44%), Gaps = 8/121 (6%)
Query: 3 LRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVINVLDEHRSSFLE 62
+R + DL PAQL AV ASLV E +++ + +P + N + R + E
Sbjct: 802 IRAGVFDDLTPAQLVAVLASLVYES-----RRSDDHWRKPRMPDLVTENAMTTVRRIWRE 856
Query: 63 L---QEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQ 119
+ + + + D FS WASG +++ D L GD R +R+ +D Q
Sbjct: 857 VSLVERDNRLSRGPEPDIGFSQSAYGWASGRPLADVLADGHLTAGDFVRWVRQVLDFAGQ 916
Query: 120 I 120
+
Sbjct: 917 V 917
>gi|220912683|ref|YP_002487992.1| DEAD/DEAH box helicase [Arthrobacter chlorophenolicus A6]
gi|219859561|gb|ACL39903.1| DEAD/DEAH box helicase domain protein [Arthrobacter
chlorophenolicus A6]
Length = 984
Score = 40.4 bits (93), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 75/150 (50%), Gaps = 21/150 (14%)
Query: 3 LRNKILLDLKPAQLAAVCASLVSE------GIKVRLWKNNSYIYEPSTTVINVINVLDEH 56
LR DL ++AA+ + LV + G++ R+ PS ++ ++++
Sbjct: 838 LRLGAFDDLDAVEVAALASVLVYQAKREDRGLRPRM---------PSVSLETSVDIVVRE 888
Query: 57 RSSFLELQEKHGVEIPCCLDSQFSGMV---EAWASGLTWREMMMDCALDDGDLARLLRRT 113
S+ +++E + ++P + + G+V WA G ++++ L GD R +++
Sbjct: 889 WSALEDVEEAN--KLPLTGEPEL-GLVWPIYKWARGRHLQDVLSGTDLAAGDFVRWVKQV 945
Query: 114 IDLLAQIPKLPDVDQRLQKNAVDASNVMDR 143
+DLL QI K+P ++ RL + +A N++ R
Sbjct: 946 VDLLDQIAKIPGLEPRLARLCGEAINLIRR 975
>gi|269126555|ref|YP_003299925.1| DSH domain-containing protein [Thermomonospora curvata DSM 43183]
gi|268311513|gb|ACY97887.1| DSH domain protein [Thermomonospora curvata DSM 43183]
Length = 916
Score = 40.4 bits (93), Expect = 0.28, Method: Composition-based stats.
Identities = 33/141 (23%), Positives = 62/141 (43%), Gaps = 3/141 (2%)
Query: 3 LRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVINVLDEHRSSFLE 62
LR + +L+PA+LAA ++LV E R + + P + +
Sbjct: 770 LRAGLWEELEPAELAACVSALVYES---RQPDDAATPRTPPGAAQEALAAMMRLWGELEA 826
Query: 63 LQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPK 122
++ + V D F+ WASG + E++++ + GD R +++ IDLL Q+
Sbjct: 827 IERDNRVSFLREPDLGFAWTAYRWASGHSLDEVLLESQMTAGDFVRAVKQLIDLLGQVAD 886
Query: 123 LPDVDQRLQKNAVDASNVMDR 143
R+++ A A + + R
Sbjct: 887 AAPEGSRVRQTAGKAMDGLRR 907
>gi|433455773|ref|ZP_20413843.1| superfamily II RNA helicase [Arthrobacter crystallopoietes BAB-32]
gi|432197131|gb|ELK53533.1| superfamily II RNA helicase [Arthrobacter crystallopoietes BAB-32]
Length = 942
Score = 40.0 bits (92), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 62/130 (47%), Gaps = 21/130 (16%)
Query: 10 DLKPAQLAAVCASLVSE------GIKVRLWKNNSYIYEPSTTVINVINVLDEHRSSFLEL 63
DL A++AA +SLV + GI+ ++ PS ++ +++ S +
Sbjct: 802 DLDAAEVAAFVSSLVFQAKREETGIRPKM---------PSVSLETAVDIAVREWSVLNDR 852
Query: 64 QEKHGVEIPCCLDSQFSGMV---EAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQI 120
+E+H ++P + + G+V WA G + + L GD R ++ IDLL Q+
Sbjct: 853 EEQH--KLPLSGEPEL-GLVWPMYKWAQGRSLLTALQGTELAAGDFVRWAKQVIDLLDQL 909
Query: 121 PKLPDVDQRL 130
K+PD+D L
Sbjct: 910 VKVPDMDPHL 919
>gi|444307788|ref|ZP_21143504.1| superfamily II RNA helicase, partial [Arthrobacter sp. SJCon]
gi|443479875|gb|ELT42854.1| superfamily II RNA helicase, partial [Arthrobacter sp. SJCon]
Length = 667
Score = 40.0 bits (92), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 31/147 (21%), Positives = 72/147 (48%), Gaps = 15/147 (10%)
Query: 3 LRNKILLDLKPAQLAAVCASLVSE------GIKVRLWKNNSYIYEPSTTVINVINVLDEH 56
LR DL ++AA+ ++LV + G++ R+ PS ++ ++++
Sbjct: 521 LRLGAFDDLDAVEVAALASALVYQAKREDRGLRPRM---------PSVSLETAVDIVVRE 571
Query: 57 RSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDL 116
S+ +++E++ + + + + WA G ++++ L GD R +++ +DL
Sbjct: 572 WSALEDVEEENKLPLTGEPELGLVWPIYKWARGRHLQDVLSGTDLAAGDFVRWVKQVVDL 631
Query: 117 LAQIPKLPDVDQRLQKNAVDASNVMDR 143
L Q+ K+P ++ RL + +A ++ R
Sbjct: 632 LDQLAKIPGLEPRLARLCAEAITLIRR 658
>gi|453382310|dbj|GAC83193.1| putative helicase [Gordonia paraffinivorans NBRC 108238]
Length = 931
Score = 40.0 bits (92), Expect = 0.35, Method: Composition-based stats.
Identities = 42/150 (28%), Positives = 63/150 (42%), Gaps = 15/150 (10%)
Query: 3 LRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSY----IYEPSTTVINVINVLDEHRS 58
+R + +L P+ LAAV A+LV E + +SY S ++ + + +
Sbjct: 780 IRAGVWEELSPSDLAAVVAALVFES------RRDSYGGIDTMPGSRSLRVALGATVDIWN 833
Query: 59 SFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCA-----LDDGDLARLLRRT 113
++ +H V D+ FS V WASG + E ++ L GD R R+
Sbjct: 834 RVTAVEARHRVTPTREPDTGFSLAVATWASGRSLTEALVLAGERGQLLSPGDFVRWNRQV 893
Query: 114 IDLLAQIPKLPDVDQRLQKNAVDASNVMDR 143
IDLL QI D RL A A + R
Sbjct: 894 IDLLEQIRLCVGTDTRLGGTARAAVKAIRR 923
>gi|381397258|ref|ZP_09922671.1| DEAD/DEAH box helicase domain protein [Microbacterium
laevaniformans OR221]
gi|380775575|gb|EIC08866.1| DEAD/DEAH box helicase domain protein [Microbacterium
laevaniformans OR221]
Length = 826
Score = 40.0 bits (92), Expect = 0.36, Method: Composition-based stats.
Identities = 30/123 (24%), Positives = 54/123 (43%), Gaps = 2/123 (1%)
Query: 3 LRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVINVLDEHRSSFLE 62
LR +I DL PA L+A+ LV E + + P + E + +
Sbjct: 682 LRTRIWKDLDPAGLSALACCLVYEPRRDESGPGEHGL--PRGAFRAALTATQELWARLDD 739
Query: 63 LQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPK 122
L++ H + + + + + +WA G + ++ + L GD R ++TIDLL Q+
Sbjct: 740 LEQDHRLPGSSPVATGLAQAMHSWARGASLDRVLQEADLAAGDFVRWTKQTIDLLDQLSM 799
Query: 123 LPD 125
+ D
Sbjct: 800 VAD 802
>gi|319949284|ref|ZP_08023364.1| DEAD/DEAH box helicase [Dietzia cinnamea P4]
gi|319437074|gb|EFV92114.1| DEAD/DEAH box helicase [Dietzia cinnamea P4]
Length = 886
Score = 39.7 bits (91), Expect = 0.36, Method: Composition-based stats.
Identities = 38/143 (26%), Positives = 67/143 (46%), Gaps = 19/143 (13%)
Query: 3 LRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVI-NVINVLDEHRSSFL 61
LR + L A LAAV A++V+ + +S I EPS V+ + + + +
Sbjct: 740 LRRGVWRGLDAAGLAAVIATIVAHP------RTDSAIREPSDEVLRSALAETERVAADVA 793
Query: 62 ELQEKHGVEIPCCLDSQFSGMVEAWASG--------LTWREMMMDCALDDGDLARLLRRT 113
E++ H + LD+ + ++ W SG +W+E + L GD R R
Sbjct: 794 EVERAHRLPTTPDLDAGLAPVLHHWVSGGALASILAASWQEGV---ELTAGDFVRSARLV 850
Query: 114 IDLLAQIPKLPDVD-QRLQKNAV 135
+D+LAQ+ ++ + D R ++AV
Sbjct: 851 VDVLAQVGQVAEPDLARTARSAV 873
>gi|212715833|ref|ZP_03323961.1| hypothetical protein BIFCAT_00735 [Bifidobacterium catenulatum DSM
16992 = JCM 1194]
gi|212661200|gb|EEB21775.1| hypothetical protein BIFCAT_00735 [Bifidobacterium catenulatum DSM
16992 = JCM 1194]
Length = 865
Score = 39.7 bits (91), Expect = 0.37, Method: Composition-based stats.
Identities = 39/137 (28%), Positives = 58/137 (42%), Gaps = 4/137 (2%)
Query: 11 LKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVINVLDEHRSSFLELQEKHGVE 70
L +LA+V ASLV E + + Y V L +S L E H +E
Sbjct: 720 LNACELASVVASLVFEARRGSGGEPRRYPGGIQGNVAVCAAQLKGIHASIAMLCEDHMLE 779
Query: 71 IPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQI----PKLPDV 126
P LD + +V WA G + +++ L GD R +R D+L QI P L +
Sbjct: 780 EPRQLDFGITDIVYEWAQGESLSQVLYGTELTGGDFVRNCKRLADVLQQIAVSGPYLAER 839
Query: 127 DQRLQKNAVDASNVMDR 143
+ L A A + ++R
Sbjct: 840 AETLPAIARQAYDRINR 856
>gi|344998672|ref|YP_004801526.1| DSH domain-containing protein [Streptomyces sp. SirexAA-E]
gi|344314298|gb|AEN08986.1| DSH domain protein [Streptomyces sp. SirexAA-E]
Length = 943
Score = 39.7 bits (91), Expect = 0.39, Method: Composition-based stats.
Identities = 35/123 (28%), Positives = 54/123 (43%), Gaps = 8/123 (6%)
Query: 3 LRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTT----VINVINVLDEHRS 58
LR+ + L PA+LAA ++LV E + P+ ++ + LD
Sbjct: 790 LRDGVWEGLNPAELAACVSALVYEARQADDAVAPKLPSGPAKVAMGEMVRIWGRLDALEE 849
Query: 59 SF-LELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLL 117
F + E G P D F+ V WASG T E++ + + GD R ++ ID+L
Sbjct: 850 DFKISQTEGVGQREP---DLGFAWAVYMWASGRTLDEVLREAEMPAGDFVRWCKQVIDVL 906
Query: 118 AQI 120
QI
Sbjct: 907 GQI 909
>gi|417931509|ref|ZP_12574874.1| type III restriction enzyme, res subunit [Propionibacterium acnes
SK182B-JCVI]
gi|340775452|gb|EGR97505.1| type III restriction enzyme, res subunit [Propionibacterium acnes
SK182B-JCVI]
Length = 917
Score = 39.7 bits (91), Expect = 0.40, Method: Composition-based stats.
Identities = 37/124 (29%), Positives = 55/124 (44%), Gaps = 17/124 (13%)
Query: 3 LRNKILLDLKPAQLAAVCASLVSE---GIKVRLWKNNSYIYEPSTTVINVINVLDEHRSS 59
+R + L QLAAV +++V E G + L + E + + + I R+
Sbjct: 773 IRRGVFDSLDCPQLAAVLSTIVHESRPGDRSHLHRMPDRDSEAAESQLRAI------RAE 826
Query: 60 FLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDD---GDLARLLRRTIDL 116
L+ H +E P LD F+ AWA+G +D LDD GD R +R+ DL
Sbjct: 827 IGLLERDHRIERPRDLDIGFAEASYAWAAGAG-----LDTVLDDMSAGDFVRRVRQVCDL 881
Query: 117 LAQI 120
QI
Sbjct: 882 AGQI 885
>gi|357402751|ref|YP_004914676.1| helicase helY [Streptomyces cattleya NRRL 8057 = DSM 46488]
gi|386358824|ref|YP_006057070.1| DSH domain-containing protein [Streptomyces cattleya NRRL 8057 =
DSM 46488]
gi|337769160|emb|CCB77873.1| putative helicase helY [Streptomyces cattleya NRRL 8057 = DSM
46488]
gi|365809332|gb|AEW97548.1| DSH domain protein [Streptomyces cattleya NRRL 8057 = DSM 46488]
Length = 947
Score = 39.7 bits (91), Expect = 0.43, Method: Composition-based stats.
Identities = 41/149 (27%), Positives = 66/149 (44%), Gaps = 14/149 (9%)
Query: 3 LRNKILLDLKPAQLAAVCASLVSEG------IKVRLWKNNS-YIYEPSTTVINVINVL-D 54
LR + L PA+LAA ++LV E + +L N+ + + ++ L D
Sbjct: 796 LREGVWNGLGPAELAACASALVYESRSADDMLAPKLPGGNARHALGEMVRIWGRLDALED 855
Query: 55 EHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTI 114
EHR ++ E G P D F+ WASG ++ D + GD R ++ I
Sbjct: 856 EHR---IKQSEGVGQREP---DLGFAWAAHRWASGHGLDAVLRDADMPAGDFVRWTKQLI 909
Query: 115 DLLAQIPKLPDVDQRLQKNAVDASNVMDR 143
D+L QI + D ++ NA A + + R
Sbjct: 910 DVLGQIAEAAPQDSPVRANARKAVDKLLR 938
>gi|421736662|ref|ZP_16175432.1| putative helicase, partial [Bifidobacterium bifidum IPLA 20015]
gi|407296032|gb|EKF15644.1| putative helicase, partial [Bifidobacterium bifidum IPLA 20015]
Length = 568
Score = 39.7 bits (91), Expect = 0.47, Method: Composition-based stats.
Identities = 42/142 (29%), Positives = 61/142 (42%), Gaps = 14/142 (9%)
Query: 11 LKPAQLAAVCASLVSE-----GIKVRLWKNNSYIYEPSTTVINVINVLDEHRSSFLELQE 65
L QLAAV ++LV E G + R W I P V LD + L E
Sbjct: 421 LTARQLAAVLSALVFEARGGTGGEPRRWPGG--IQGP---VAQTSQSLDRLHAQLTMLCE 475
Query: 66 KHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQI----P 121
G++ LD ++ WASG + ++ D + GD R +R D+L QI P
Sbjct: 476 DEGLDDLQQLDFGIVDIMYDWASGNSLAYVLHDRDMTGGDFVRNAKRLSDILQQISAAEP 535
Query: 122 KLPDVDQRLQKNAVDASNVMDR 143
LP L + A +A +++R
Sbjct: 536 YLPQGSAHLAQVAHEAMELVNR 557
>gi|441508564|ref|ZP_20990488.1| putative helicase [Gordonia aichiensis NBRC 108223]
gi|441447592|dbj|GAC48449.1| putative helicase [Gordonia aichiensis NBRC 108223]
Length = 935
Score = 39.7 bits (91), Expect = 0.47, Method: Composition-based stats.
Identities = 43/154 (27%), Positives = 67/154 (43%), Gaps = 23/154 (14%)
Query: 3 LRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSYI--------YEPSTTVINVINVLD 54
+R I L P QLAAV A++V E + +S+ E T + +++
Sbjct: 784 IRAAIWDTLGPPQLAAVVAAMVFES------RRDSHAGADAMPGNVELRTAIAATLDIW- 836
Query: 55 EHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCA-----LDDGDLARL 109
H+ S +++ +HGV D+ FS V WA+G + E + L GD R
Sbjct: 837 -HQVS--DVERRHGVSPTREPDTGFSVAVSLWAAGRSLTESLAAAGERGTLLSPGDFVRW 893
Query: 110 LRRTIDLLAQIPKLPDVDQRLQKNAVDASNVMDR 143
R+ +DLL QI D L ++A A + R
Sbjct: 894 NRQIVDLLEQIRLGVGDDAPLARSARAAVKAIRR 927
>gi|336178159|ref|YP_004583534.1| DEAD/DEAH box helicase [Frankia symbiont of Datisca glomerata]
gi|334859139|gb|AEH09613.1| DEAD/DEAH box helicase domain protein [Frankia symbiont of Datisca
glomerata]
Length = 934
Score = 39.3 bits (90), Expect = 0.49, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 55/120 (45%), Gaps = 5/120 (4%)
Query: 3 LRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVINVLDEHRSSFLE 62
LR+ + L PA LAA ++LV E R + + + + + +
Sbjct: 786 LRDGVWEGLSPAALAAAVSTLVYEP---RGEETAATKTPGDPGLRDALTATARIAGRLRD 842
Query: 63 LQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALD--DGDLARLLRRTIDLLAQI 120
++ HG++ + F+ + WASG + +++ D LD GD R +R+ IDLL QI
Sbjct: 843 VEAAHGLDFLRPPEPGFAWVAFGWASGQSLEKVLTDSGLDLTAGDFVRWMRQLIDLLDQI 902
>gi|256391637|ref|YP_003113201.1| DEAD/DEAH box helicase [Catenulispora acidiphila DSM 44928]
gi|256357863|gb|ACU71360.1| DEAD/DEAH box helicase domain protein [Catenulispora acidiphila DSM
44928]
Length = 951
Score = 39.3 bits (90), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 51/119 (42%), Gaps = 3/119 (2%)
Query: 2 VLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVINVLDEHRSSFL 61
LR + L P +LAA ++LV E R + P V ++ + +
Sbjct: 796 TLRAGLWEGLTPPELAACVSALVYE---ARRADDAGPPRLPGGAVPKTLDEMVRLWAKLE 852
Query: 62 ELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQI 120
+L+ H +E D F+ WASG E++ D + GD R ++ IDLL Q+
Sbjct: 853 DLETDHHLEFQREPDLGFALPAFHWASGKALEEVLWDVEMPAGDFVRWCKQLIDLLGQV 911
>gi|377558144|ref|ZP_09787758.1| putative helicase [Gordonia otitidis NBRC 100426]
gi|377524713|dbj|GAB32923.1| putative helicase [Gordonia otitidis NBRC 100426]
Length = 937
Score = 39.3 bits (90), Expect = 0.50, Method: Composition-based stats.
Identities = 40/151 (26%), Positives = 65/151 (43%), Gaps = 17/151 (11%)
Query: 3 LRNKILLDLKPAQLAAVCASLVSEGIK-----VRLWKNNSYIYEPSTTVINVINVLDEHR 57
+R I L PA+L+AV A++V E + N+ + T + +++ +
Sbjct: 786 IRAGIWDTLGPAELSAVVAAMVFESRRDSHAGADAMPGNTAL---RTAIAETVDIWHQ-- 840
Query: 58 SSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCA-----LDDGDLARLLRR 112
+++ +HGV D+ FS V WASG + E + L GD R R+
Sbjct: 841 --VTDVERRHGVSPTREPDTGFSIAVSLWASGRSLTESLAAAGERGQLLSPGDFVRWNRQ 898
Query: 113 TIDLLAQIPKLPDVDQRLQKNAVDASNVMDR 143
+DLL QI D L ++A A + R
Sbjct: 899 VVDLLEQIRLGVGDDAPLARSARSAVGAIRR 929
>gi|258515313|ref|YP_003191535.1| DSH domain-containing protein [Desulfotomaculum acetoxidans DSM
771]
gi|257779018|gb|ACV62912.1| DSH domain protein [Desulfotomaculum acetoxidans DSM 771]
Length = 516
Score = 39.3 bits (90), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 62/142 (43%), Gaps = 15/142 (10%)
Query: 7 ILLDLKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVINVLDEHRSSFLELQEK 66
I+ D PA++AA+ GI + + I V+++ V + HR ELQ K
Sbjct: 386 IMSDATPAEIAAIIV-----GIDYEANRRDKMI----PNVVDLSKVEELHR----ELQ-K 431
Query: 67 HGVEIPCCLDSQFSG-MVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPD 125
V + C S G + W G ++ ++ + +GD+ +LRR IDLL QI
Sbjct: 432 SNVPLHFCSWSPIPGPLAYLWHEGKSFGSLLEMTEMQEGDIFSMLRREIDLLRQIESALK 491
Query: 126 VDQRLQKNAVDASNVMDRPPIS 147
D LQ +DR +S
Sbjct: 492 DDPALQAKIRGVRLSLDRDEVS 513
>gi|269795155|ref|YP_003314610.1| superfamily II RNA helicase [Sanguibacter keddieii DSM 10542]
gi|269097340|gb|ACZ21776.1| superfamily II RNA helicase [Sanguibacter keddieii DSM 10542]
Length = 972
Score = 38.9 bits (89), Expect = 0.69, Method: Composition-based stats.
Identities = 39/132 (29%), Positives = 58/132 (43%), Gaps = 12/132 (9%)
Query: 3 LRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVINVLDEHR---SS 59
LR + DL PA LAA +++V R + P + LDE S+
Sbjct: 825 LRRGVWDDLDPAGLAAAVSTVVYSA---RRDDREEEPHVPGGPDGRLARALDETVRIWSA 881
Query: 60 FLELQEKHGVEIPCCLDSQFSGMVEA---WASGLTWREMMMDCALDDGDLARLLRRTIDL 116
+L++ H +E LD G+VEA WASG + ++ L GD R ++ ID+
Sbjct: 882 LDDLEDAHRLEATGPLDM---GLVEAMHRWASGRSLDVVLKGTDLAAGDFVRWCKQVIDV 938
Query: 117 LAQIPKLPDVDQ 128
L Q+ K D
Sbjct: 939 LGQLTKASPQDH 950
>gi|359419360|ref|ZP_09211318.1| putative helicase [Gordonia araii NBRC 100433]
gi|358244767|dbj|GAB09387.1| putative helicase [Gordonia araii NBRC 100433]
Length = 942
Score = 38.9 bits (89), Expect = 0.73, Method: Composition-based stats.
Identities = 38/124 (30%), Positives = 51/124 (41%), Gaps = 9/124 (7%)
Query: 3 LRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINV-INVLDEHRSSFL 61
LR + L P +LAAV ASLV R P + + ++ +
Sbjct: 791 LREGAWIGLSPDELAAVVASLVYTS---RRESGGGTDRMPGSAALRAALSGTARIWRDVV 847
Query: 62 ELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCA-----LDDGDLARLLRRTIDL 116
E + +HGV D+ FS WASG + E +M L GD R R+ IDL
Sbjct: 848 EAELRHGVTPTREPDTGFSVAAAMWASGRSLAESLMAAGEAGQLLSPGDFVRWNRQVIDL 907
Query: 117 LAQI 120
L QI
Sbjct: 908 LDQI 911
>gi|421734870|ref|ZP_16173919.1| helicase [Bifidobacterium bifidum LMG 13195]
gi|407077204|gb|EKE50061.1| helicase [Bifidobacterium bifidum LMG 13195]
Length = 852
Score = 38.9 bits (89), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 63/151 (41%), Gaps = 14/151 (9%)
Query: 2 VLRNKILLDLKPAQLAAVCASLVSE-----GIKVRLWKNNSYIYEPSTTVINVINVLDEH 56
L + L QLAAV ++LV E G + R W I P V LD
Sbjct: 696 ALERGMFDHLTARQLAAVLSALVFEARGGTGGEPRRWPGG--IQGP---VAQTSQSLDRL 750
Query: 57 RSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDL 116
+ L E G++ LD ++ WASG + ++ D + GD R +R D+
Sbjct: 751 HAQLTMLCEDEGLDDLQQLDFGIVDIMYDWASGNSLAYVLHDRDMTGGDFVRNAKRLSDI 810
Query: 117 LAQI----PKLPDVDQRLQKNAVDASNVMDR 143
L QI P LP L + A +A +++R
Sbjct: 811 LQQISAAEPYLPQGSAHLAQVAHEAMELVNR 841
>gi|310287448|ref|YP_003938706.1| Helicase helY [Bifidobacterium bifidum S17]
gi|309251384|gb|ADO53132.1| Helicase helY [Bifidobacterium bifidum S17]
Length = 852
Score = 38.5 bits (88), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 63/151 (41%), Gaps = 14/151 (9%)
Query: 2 VLRNKILLDLKPAQLAAVCASLVSE-----GIKVRLWKNNSYIYEPSTTVINVINVLDEH 56
L + L QLAAV ++LV E G + R W I P V LD
Sbjct: 696 ALERGMFDHLTARQLAAVLSALVFEARGGTGGEPRRWPGG--IQGP---VAQTSQSLDRL 750
Query: 57 RSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDL 116
+ L E G++ LD ++ WASG + ++ D + GD R +R D+
Sbjct: 751 HAQLTMLCEDEGLDDLQQLDFGIVDIMYDWASGNSLAYVLHDRDMTGGDFVRNAKRLSDI 810
Query: 117 LAQI----PKLPDVDQRLQKNAVDASNVMDR 143
L QI P LP L + A +A +++R
Sbjct: 811 LQQISAAEPYLPQGSAHLAQVAHEAMELVNR 841
>gi|311064364|ref|YP_003971089.1| helicase [Bifidobacterium bifidum PRL2010]
gi|310866683|gb|ADP36052.1| HelY Helicase [Bifidobacterium bifidum PRL2010]
Length = 852
Score = 38.5 bits (88), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 63/151 (41%), Gaps = 14/151 (9%)
Query: 2 VLRNKILLDLKPAQLAAVCASLVSE-----GIKVRLWKNNSYIYEPSTTVINVINVLDEH 56
L + L QLAAV ++LV E G + R W I P V LD
Sbjct: 696 ALERGMFDHLTARQLAAVLSALVFEARGGTGGEPRRWPGG--IQGP---VAQTSQSLDRL 750
Query: 57 RSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDL 116
+ L E G++ LD ++ WASG + ++ D + GD R +R D+
Sbjct: 751 HAQLTMLCEDEGLDDLQQLDFGIVDIMYDWASGNSLAYVLHDRDMTGGDFVRNAKRLSDI 810
Query: 117 LAQI----PKLPDVDQRLQKNAVDASNVMDR 143
L QI P LP L + A +A +++R
Sbjct: 811 LQQISAAEPYLPQGSAHLAQVAHEAMELVNR 841
>gi|441515098|ref|ZP_20996906.1| putative helicase [Gordonia amicalis NBRC 100051]
gi|441450085|dbj|GAC54867.1| putative helicase [Gordonia amicalis NBRC 100051]
Length = 942
Score = 38.5 bits (88), Expect = 0.87, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 38/91 (41%), Gaps = 5/91 (5%)
Query: 58 SSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCA-----LDDGDLARLLRR 112
S ++ +H V D+ FS V WASG T E ++ L GD R R+
Sbjct: 844 SKVTAVESRHRVSPTREPDTGFSLAVATWASGRTLSEALLLAGERGQLLSPGDFVRWNRQ 903
Query: 113 TIDLLAQIPKLPDVDQRLQKNAVDASNVMDR 143
IDLL QI D RL A A + R
Sbjct: 904 VIDLLEQIRLCVGTDTRLGGTARSAVRAIRR 934
>gi|117928413|ref|YP_872964.1| DSH domain-containing protein [Acidothermus cellulolyticus 11B]
gi|117648876|gb|ABK52978.1| DSH domain protein [Acidothermus cellulolyticus 11B]
Length = 906
Score = 38.5 bits (88), Expect = 0.87, Method: Composition-based stats.
Identities = 41/153 (26%), Positives = 62/153 (40%), Gaps = 17/153 (11%)
Query: 3 LRNKILLDLKPAQLAAVCASLV-----SEGIKVRLWKNNSYIYEPSTTVINVINVLDEHR 57
LR + L PA+LA A LV E VRL + E I+V L E
Sbjct: 763 LRRGVWSGLTPAELAGAVAVLVYEPREDEPAVVRLPAGR--LAEACARTIDVWRDLTE-- 818
Query: 58 SSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLL 117
++++H + +F WA G ++++ + GD R R+ +DLL
Sbjct: 819 -----VEQRHRLNFLREPSPRFVTAAYRWARGADLETILVEQDMSAGDFVRWTRQLVDLL 873
Query: 118 AQIPKLPDVDQRLQKNAVDAS---NVMDRPPIS 147
QI + D D R A S V+D P++
Sbjct: 874 GQIEQAADGDLRAVAAAAAGSLRRGVVDYTPVA 906
>gi|390936819|ref|YP_006394378.1| putative helicase [Bifidobacterium bifidum BGN4]
gi|389890432|gb|AFL04499.1| putative helicase [Bifidobacterium bifidum BGN4]
Length = 875
Score = 38.5 bits (88), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 63/151 (41%), Gaps = 14/151 (9%)
Query: 2 VLRNKILLDLKPAQLAAVCASLVSE-----GIKVRLWKNNSYIYEPSTTVINVINVLDEH 56
L + L QLAAV ++LV E G + R W I P V LD
Sbjct: 696 ALERGMFDHLTARQLAAVLSALVFEARGGTGGEPRRWPGG--IQGP---VAQTSQSLDRL 750
Query: 57 RSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDL 116
+ L E G++ LD ++ WASG + ++ D + GD R +R D+
Sbjct: 751 HAQLTMLCEDEGLDDLQQLDFGIVDIMYDWASGNSLAYVLHDRDMTGGDFVRNAKRLSDI 810
Query: 117 LAQI----PKLPDVDQRLQKNAVDASNVMDR 143
L QI P LP L + A +A +++R
Sbjct: 811 LQQISAAEPYLPQGSAHLAQVAHEAMELVNR 841
>gi|159118603|ref|XP_001709520.1| Helicase [Giardia lamblia ATCC 50803]
gi|157437637|gb|EDO81846.1| Helicase [Giardia lamblia ATCC 50803]
Length = 1361
Score = 38.5 bits (88), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 68/135 (50%), Gaps = 13/135 (9%)
Query: 8 LLDLKPAQLAAVCASLVSEGIKVR-LWKNNSYIYEPSTTVINVINVLDEHRSSFLE--LQ 64
DL P LA V ASL+ EG K+N +P + + L + S L+
Sbjct: 1201 FTDLTPRVLAGVLASLLGEGTGASGSSKSNQLQMDPKLS--QALTKLKQIVSMLLKDCAT 1258
Query: 65 EKHGVEIPCC-----LDSQFSGMVEAWASGLTWREMM-MDCALDDGDLARLLRRTIDLLA 118
E +E+ C +D + + +WA+G T++E++ +D + +G++ R+ RR I+L+
Sbjct: 1259 EDTTLELRCTTVDHIVDDTTAVIAFSWAAGQTFQEILDIDRSQFEGNIVRMFRRLINLVD 1318
Query: 119 QIPKLPDV--DQRLQ 131
Q+ +V D+RL+
Sbjct: 1319 QLIIAVEVIGDERLK 1333
>gi|271967138|ref|YP_003341334.1| nuclear exosomal RNA helicase MTR4 [Streptosporangium roseum DSM
43021]
gi|270510313|gb|ACZ88591.1| putative nuclear exosomal RNA helicase MTR4 ; K01529
[Streptosporangium roseum DSM 43021]
Length = 909
Score = 38.5 bits (88), Expect = 0.96, Method: Composition-based stats.
Identities = 38/148 (25%), Positives = 61/148 (41%), Gaps = 13/148 (8%)
Query: 3 LRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVINVLDEHRSSFLE 62
LR + +L PA+LAAV +SLV E + +P V L + + E
Sbjct: 759 LRAGLWEELDPAELAAVVSSLVFES------RQADDARQPRIPAGGVQKALGDMVRLWGE 812
Query: 63 LQE---KHGVEIPCCLDSQFSGMVEAWASGLTWREMMMD----CALDDGDLARLLRRTID 115
L+ HG+ D F+ WA G ++ D L GD R +++ +D
Sbjct: 813 LESIEGDHGLSFIREPDFGFAWAAFRWAKGQNLDAVLRDGVNGAELAAGDFVRWIKQLLD 872
Query: 116 LLAQIPKLPDVDQRLQKNAVDASNVMDR 143
LL QI ++++N A + + R
Sbjct: 873 LLGQISDAAPKSSKVKQNTGKAMDALRR 900
>gi|291443514|ref|ZP_06582904.1| ATP-dependent RNA helicase [Streptomyces roseosporus NRRL 15998]
gi|291346461|gb|EFE73365.1| ATP-dependent RNA helicase [Streptomyces roseosporus NRRL 15998]
Length = 946
Score = 38.5 bits (88), Expect = 0.97, Method: Composition-based stats.
Identities = 34/123 (27%), Positives = 53/123 (43%), Gaps = 8/123 (6%)
Query: 3 LRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTT----VINVINVLDEHRS 58
LR + L PA+LAA ++LV E + P+ ++ + LD
Sbjct: 790 LREGVWEGLNPAELAACVSALVYEARQADDAVAPKLPSGPAKVAMGEMVRIWGRLDALEE 849
Query: 59 SF-LELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLL 117
F + E G P D F+ V WASG T E++ + + GD R ++ ID+L
Sbjct: 850 DFKINQTEGVGQREP---DLGFAWAVYMWASGRTLDEVLREAEMPAGDFVRWCKQVIDVL 906
Query: 118 AQI 120
Q+
Sbjct: 907 GQV 909
>gi|111222303|ref|YP_713097.1| ATP-dependent RNA helicase [Frankia alni ACN14a]
gi|111149835|emb|CAJ61529.1| Putative ATP-dependent RNA helicase [Frankia alni ACN14a]
Length = 1011
Score = 38.5 bits (88), Expect = 0.97, Method: Composition-based stats.
Identities = 45/156 (28%), Positives = 61/156 (39%), Gaps = 31/156 (19%)
Query: 3 LRNKILLDLKPAQLAAVCASLVSE-------------GIKVRLWKNNSYIYEPSTTVINV 49
LR I DL LAA +SLV E G +R + E S +
Sbjct: 863 LRAGIWEDLTAPALAAAVSSLVFEPRGDDVGVPALPGGAALR-----DCLDEMSRLAFRL 917
Query: 50 INVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALD--DGDLA 107
HR SFL E V P D WA G ++ D L+ GD
Sbjct: 918 AATEQGHRLSFLRPPELGFV--PAAHD---------WAVGRPLERVLTDSGLELTAGDFV 966
Query: 108 RLLRRTIDLLAQIPKLPDVDQRLQKNAVDASNVMDR 143
R +R+ +DLL QI K+ D R+++ A A + + R
Sbjct: 967 RWMRQLLDLLDQIAKVAPDDSRVRRTARSAMDALRR 1002
>gi|262202396|ref|YP_003273604.1| DEAD/DEAH box helicase [Gordonia bronchialis DSM 43247]
gi|262085743|gb|ACY21711.1| DEAD/DEAH box helicase domain protein [Gordonia bronchialis DSM
43247]
Length = 932
Score = 38.5 bits (88), Expect = 0.98, Method: Composition-based stats.
Identities = 38/128 (29%), Positives = 52/128 (40%), Gaps = 17/128 (13%)
Query: 3 LRNKILLDLKPAQLAAVCASLVSEGIK-----VRLWKNNSYIYEPSTTVINVINVLDEHR 57
LR + L P +LAAV ASLV E + V N+ + V
Sbjct: 781 LRAGVWEGLAPPELAAVVASLVYESRRDSYRGVDAMPGNAGVRAAMAATAAVW------- 833
Query: 58 SSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCA-----LDDGDLARLLRR 112
+ E++ +H V D+ FS V WASG + E + L GD R R+
Sbjct: 834 TEVTEVERRHQVTPTREPDTGFSVAVSLWASGRSLTEALAAAGERGQLLSPGDFVRWNRQ 893
Query: 113 TIDLLAQI 120
+DLL QI
Sbjct: 894 VVDLLEQI 901
>gi|239986574|ref|ZP_04707238.1| putative ATP-dependent RNA helicase [Streptomyces roseosporus NRRL
11379]
Length = 926
Score = 38.5 bits (88), Expect = 0.98, Method: Composition-based stats.
Identities = 34/123 (27%), Positives = 53/123 (43%), Gaps = 8/123 (6%)
Query: 3 LRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTT----VINVINVLDEHRS 58
LR + L PA+LAA ++LV E + P+ ++ + LD
Sbjct: 770 LREGVWEGLNPAELAACVSALVYEARQADDAVAPKLPSGPAKVAMGEMVRIWGRLDALEE 829
Query: 59 SF-LELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLL 117
F + E G P D F+ V WASG T E++ + + GD R ++ ID+L
Sbjct: 830 DFKINQTEGVGQREP---DLGFAWAVYMWASGRTLDEVLREAEMPAGDFVRWCKQVIDVL 886
Query: 118 AQI 120
Q+
Sbjct: 887 GQV 889
>gi|182439666|ref|YP_001827385.1| ATP-dependent RNA helicase [Streptomyces griseus subsp. griseus
NBRC 13350]
gi|326780331|ref|ZP_08239596.1| DSH domain protein [Streptomyces griseus XylebKG-1]
gi|178468182|dbj|BAG22702.1| putative ATP-dependent RNA helicase [Streptomyces griseus subsp.
griseus NBRC 13350]
gi|326660664|gb|EGE45510.1| DSH domain protein [Streptomyces griseus XylebKG-1]
Length = 946
Score = 38.5 bits (88), Expect = 0.98, Method: Composition-based stats.
Identities = 34/123 (27%), Positives = 53/123 (43%), Gaps = 8/123 (6%)
Query: 3 LRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTT----VINVINVLDEHRS 58
LR + L PA+LAA ++LV E + P+ ++ + LD
Sbjct: 790 LREGVWEGLNPAELAACVSALVYEARQADDAVAPKLPSGPAKVAMGEMVRIWGRLDALEE 849
Query: 59 SF-LELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLL 117
F + E G P D F+ V WASG T E++ + + GD R ++ ID+L
Sbjct: 850 DFKINQTEGVGQREP---DLGFAWAVYMWASGRTLDEVLREAEMPAGDFVRWCKQVIDVL 906
Query: 118 AQI 120
Q+
Sbjct: 907 GQV 909
>gi|365866685|ref|ZP_09406292.1| putative ATP-dependent RNA helicase [Streptomyces sp. W007]
gi|364003874|gb|EHM25007.1| putative ATP-dependent RNA helicase [Streptomyces sp. W007]
Length = 926
Score = 38.5 bits (88), Expect = 1.00, Method: Composition-based stats.
Identities = 34/123 (27%), Positives = 53/123 (43%), Gaps = 8/123 (6%)
Query: 3 LRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTT----VINVINVLDEHRS 58
LR + L PA+LAA ++LV E + P+ ++ + LD
Sbjct: 770 LREGVWEGLNPAELAACVSALVYEARQADDAVAPKLPSGPAKVAMGEMVRIWGRLDALEE 829
Query: 59 SF-LELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLL 117
F + E G P D F+ V WASG T E++ + + GD R ++ ID+L
Sbjct: 830 DFKINQTEGVGQREP---DLGFAWAVYMWASGQTLDEVLREAEMPAGDFVRWCKQVIDVL 886
Query: 118 AQI 120
Q+
Sbjct: 887 GQV 889
>gi|213965568|ref|ZP_03393762.1| dead/deah box helicase [Corynebacterium amycolatum SK46]
gi|213951727|gb|EEB63115.1| dead/deah box helicase [Corynebacterium amycolatum SK46]
Length = 928
Score = 38.5 bits (88), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 51/125 (40%), Gaps = 9/125 (7%)
Query: 3 LRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVINVLDEHRSSFLE 62
LR I DL PA+LA +SLV E K + + + N + +E E
Sbjct: 781 LRRGIWDDLDPAELAGAVSSLVFENRKASQGSDEVPTEPLAKALGNTYRIWEE----LSE 836
Query: 63 LQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCA-----LDDGDLARLLRRTIDLL 117
+ ++ + + D F+ + W +G + A L GD R R+ IDLL
Sbjct: 837 DERRYRLPVTDLPDMAFATAIHQWTAGAPLGYCLQAAAESGAELTPGDFVRWCRQVIDLL 896
Query: 118 AQIPK 122
QI K
Sbjct: 897 QQIKK 901
>gi|411001332|ref|ZP_11377661.1| ATP-dependent RNA helicase [Streptomyces globisporus C-1027]
Length = 926
Score = 38.5 bits (88), Expect = 1.0, Method: Composition-based stats.
Identities = 34/123 (27%), Positives = 53/123 (43%), Gaps = 8/123 (6%)
Query: 3 LRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTT----VINVINVLDEHRS 58
LR + L PA+LAA ++LV E + P+ ++ + LD
Sbjct: 770 LREGVWEGLNPAELAACVSALVYEARQADDAVAPKLPAGPAKVAMGEMVRIWGRLDALEE 829
Query: 59 SF-LELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLL 117
F + E G P D F+ V WASG T E++ + + GD R ++ ID+L
Sbjct: 830 DFKINQTEGVGQREP---DLGFAWAVYMWASGRTLDEVLREAEMPAGDFVRWCKQVIDVL 886
Query: 118 AQI 120
Q+
Sbjct: 887 GQV 889
>gi|302037127|ref|YP_003797449.1| putative helicase (C-terminal fragment) [Candidatus Nitrospira
defluvii]
gi|300605191|emb|CBK41524.1| putative Helicase (C-terminal fragment) [Candidatus Nitrospira
defluvii]
Length = 585
Score = 38.5 bits (88), Expect = 1.0, Method: Composition-based stats.
Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Query: 70 EIPCCLDSQFSGMVEAWASG--LTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVD 127
E P L + + + E W + LTW + + +GD+ RL RTI+ L+Q+ L
Sbjct: 503 EAPPMLRADVAALTERWVADQTLTWIGLARLTTMAEGDMFRLFARTIEFLSQLKTLKATH 562
Query: 128 QRLQKNAVDASNVMDRPPISEL 149
L ++A A M R + EL
Sbjct: 563 PSLAESADRAIAGMRRGVLEEL 584
>gi|451333252|ref|ZP_21903838.1| putative helicase [Amycolatopsis azurea DSM 43854]
gi|449424058|gb|EMD29360.1| putative helicase [Amycolatopsis azurea DSM 43854]
Length = 925
Score = 38.1 bits (87), Expect = 1.2, Method: Composition-based stats.
Identities = 39/149 (26%), Positives = 62/149 (41%), Gaps = 15/149 (10%)
Query: 3 LRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVINVLDEHRSSFLE 62
+R+ + L PA+LAAV ++LV E EP V++ ++E
Sbjct: 776 IRHDLWKGLSPAELAAVVSTLVFEA-------RRDTAGEPRLPAGKVVDAWQATTRLWME 828
Query: 63 LQE---KHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDC-----ALDDGDLARLLRRTI 114
L E +H ++ D+ F+ V WA G + +++ L GD R R+ I
Sbjct: 829 LTEDERRHKLDRTREPDAGFAWPVYRWARGESLEKVLTAAEANGQELSAGDFVRWSRQVI 888
Query: 115 DLLAQIPKLPDVDQRLQKNAVDASNVMDR 143
DLL QI + + A DA + R
Sbjct: 889 DLLDQIRDVLGKADPVGAAASDAVKALRR 917
>gi|311113613|ref|YP_003984835.1| helicase [Rothia dentocariosa ATCC 17931]
gi|310945107|gb|ADP41401.1| helicase [Rothia dentocariosa ATCC 17931]
Length = 973
Score = 38.1 bits (87), Expect = 1.3, Method: Composition-based stats.
Identities = 39/144 (27%), Positives = 63/144 (43%), Gaps = 5/144 (3%)
Query: 1 MVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVINVLDEHRSSF 60
+ L L DL PA +AA A+L +G K + Y + I IN +H +
Sbjct: 827 ICLEKGFLTDLDPAAIAATIAALTYQGKKETIEILPRYPHPSLQVSIATINRELDHLNVH 886
Query: 61 LELQEKHGV-EIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQ 119
+E+H + + P C D + WA G+ + + D L GD R ++ ID L Q
Sbjct: 887 ---EERHELDQTPPC-DLGLVTPIYRWARGMHLAKALEDTGLAAGDFVRWAKQVIDALDQ 942
Query: 120 IPKLPDVDQRLQKNAVDASNVMDR 143
I +P + L+ + A ++ R
Sbjct: 943 IAHIPTISPNLRASCEKAIALIRR 966
>gi|335050744|ref|ZP_08543696.1| type III restriction enzyme, res subunit [Propionibacterium sp.
409-HC1]
gi|342212890|ref|ZP_08705615.1| type III restriction enzyme, res subunit [Propionibacterium sp.
CC003-HC2]
gi|422495407|ref|ZP_16571694.1| DEAD/DEAH box helicase [Propionibacterium acnes HL025PA1]
gi|313813294|gb|EFS51008.1| DEAD/DEAH box helicase [Propionibacterium acnes HL025PA1]
gi|333769017|gb|EGL46171.1| type III restriction enzyme, res subunit [Propionibacterium sp.
409-HC1]
gi|340768434|gb|EGR90959.1| type III restriction enzyme, res subunit [Propionibacterium sp.
CC003-HC2]
Length = 917
Score = 38.1 bits (87), Expect = 1.3, Method: Composition-based stats.
Identities = 36/124 (29%), Positives = 55/124 (44%), Gaps = 17/124 (13%)
Query: 3 LRNKILLDLKPAQLAAVCASLVSE---GIKVRLWKNNSYIYEPSTTVINVINVLDEHRSS 59
+R + L QLAAV +++V E G + L + E + + + + R+
Sbjct: 773 IRRGVFDGLDCPQLAAVLSTIVHESRPGDRGHLHRMPDGKSEAAESQLRAV------RAG 826
Query: 60 FLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDD---GDLARLLRRTIDL 116
L+ H +E P LD F+ AWA+G +D LDD GD R +R+ DL
Sbjct: 827 IGLLERDHRIERPRDLDIGFAEASYAWAAGAG-----LDTVLDDMSAGDFVRRVRQVCDL 881
Query: 117 LAQI 120
QI
Sbjct: 882 AGQI 885
>gi|452945274|gb|EME50799.1| ATP-dependent RNA helicase HelY [Amycolatopsis decaplanina DSM
44594]
Length = 925
Score = 37.7 bits (86), Expect = 1.4, Method: Composition-based stats.
Identities = 39/149 (26%), Positives = 62/149 (41%), Gaps = 15/149 (10%)
Query: 3 LRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVINVLDEHRSSFLE 62
+R+ + L PA+LAAV ++LV E EP V++ ++E
Sbjct: 776 IRHDVWKGLAPAELAAVVSTLVFEA-------RRDTAGEPRLPAGKVLDAWQATTRLWME 828
Query: 63 LQE---KHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDC-----ALDDGDLARLLRRTI 114
L E +H ++ D+ F+ V WA G + +++ L GD R R+ I
Sbjct: 829 LTEDERRHKLDRTREPDAGFAWPVYRWARGESLEKVLTAAEANGQELSAGDFVRWSRQVI 888
Query: 115 DLLAQIPKLPDVDQRLQKNAVDASNVMDR 143
DLL QI + + A DA + R
Sbjct: 889 DLLDQIRDVLGKADPVGAAASDAVKALRR 917
>gi|422537005|ref|ZP_16612893.1| DEAD/DEAH box helicase [Propionibacterium acnes HL078PA1]
gi|315080918|gb|EFT52894.1| DEAD/DEAH box helicase [Propionibacterium acnes HL078PA1]
Length = 917
Score = 37.7 bits (86), Expect = 1.4, Method: Composition-based stats.
Identities = 36/124 (29%), Positives = 55/124 (44%), Gaps = 17/124 (13%)
Query: 3 LRNKILLDLKPAQLAAVCASLVSE---GIKVRLWKNNSYIYEPSTTVINVINVLDEHRSS 59
+R + L QLAAV +++V E G + L + E + + + + R+
Sbjct: 773 IRRGVFDGLDCPQLAAVLSTIVHESRPGDRGHLHRMPDGKSEAAESQLRAV------RAE 826
Query: 60 FLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDD---GDLARLLRRTIDL 116
L+ H +E P LD F+ AWA+G +D LDD GD R +R+ DL
Sbjct: 827 IGLLERDHRIERPRDLDIGFAEASYAWAAGAG-----LDTVLDDMSAGDFVRRVRQVCDL 881
Query: 117 LAQI 120
QI
Sbjct: 882 AGQI 885
>gi|377563327|ref|ZP_09792678.1| putative helicase [Gordonia sputi NBRC 100414]
gi|377529575|dbj|GAB37843.1| putative helicase [Gordonia sputi NBRC 100414]
Length = 934
Score = 37.7 bits (86), Expect = 1.5, Method: Composition-based stats.
Identities = 36/131 (27%), Positives = 56/131 (42%), Gaps = 23/131 (17%)
Query: 3 LRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSYI--------YEPSTTVINVINVLD 54
+R I L P QLAAV A++V E + +S+ E T + +++
Sbjct: 783 IRAGIWDRLGPPQLAAVIAAMVFES------RRDSHAGADAMPGNVELRTAIAATLDIW- 835
Query: 55 EHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCA-----LDDGDLARL 109
+++ +HGV D+ FS V WASG + E + L GD R
Sbjct: 836 ---CQVTDVERRHGVSPTREPDTGFSVAVSLWASGRSLTESLAAAGERGTLLSPGDFVRW 892
Query: 110 LRRTIDLLAQI 120
R+ +DLL Q+
Sbjct: 893 NRQVVDLLEQV 903
>gi|456738501|gb|EMF63068.1| helicase [Propionibacterium acnes FZ1/2/0]
Length = 917
Score = 37.7 bits (86), Expect = 1.5, Method: Composition-based stats.
Identities = 36/124 (29%), Positives = 55/124 (44%), Gaps = 17/124 (13%)
Query: 3 LRNKILLDLKPAQLAAVCASLVSE---GIKVRLWKNNSYIYEPSTTVINVINVLDEHRSS 59
+R + L QLAAV +++V E G + L + E + + + + R+
Sbjct: 773 IRRGVFDGLDCPQLAAVLSTIVHESRPGDRGHLHRMPDGKSEAAESQLRAV------RAE 826
Query: 60 FLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDD---GDLARLLRRTIDL 116
L+ H +E P LD F+ AWA+G +D LDD GD R +R+ DL
Sbjct: 827 IGLLERDHRIERPRDLDIGFAEASYAWAAGAG-----LDTVLDDMSAGDFVRRVRQVCDL 881
Query: 117 LAQI 120
QI
Sbjct: 882 AGQI 885
>gi|422431407|ref|ZP_16508285.1| DEAD/DEAH box helicase [Propionibacterium acnes HL072PA2]
gi|422534720|ref|ZP_16610644.1| DEAD/DEAH box helicase [Propionibacterium acnes HL072PA1]
gi|314978079|gb|EFT22173.1| DEAD/DEAH box helicase [Propionibacterium acnes HL072PA2]
gi|315088266|gb|EFT60242.1| DEAD/DEAH box helicase [Propionibacterium acnes HL072PA1]
Length = 917
Score = 37.7 bits (86), Expect = 1.5, Method: Composition-based stats.
Identities = 36/124 (29%), Positives = 55/124 (44%), Gaps = 17/124 (13%)
Query: 3 LRNKILLDLKPAQLAAVCASLVSE---GIKVRLWKNNSYIYEPSTTVINVINVLDEHRSS 59
+R + L QLAAV +++V E G + L + E + + + + R+
Sbjct: 773 IRRGVFDGLDCPQLAAVLSTIVHESRPGDRGHLHRMPDGKSEAAESQLRAV------RAE 826
Query: 60 FLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDD---GDLARLLRRTIDL 116
L+ H +E P LD F+ AWA+G +D LDD GD R +R+ DL
Sbjct: 827 IGLLERDHRIERPRDLDIGFAEASYAWAAGAG-----LDTVLDDMSAGDFVRRVRQVCDL 881
Query: 117 LAQI 120
QI
Sbjct: 882 AGQI 885
>gi|289428231|ref|ZP_06429927.1| DEAD/DEAH box helicase [Propionibacterium acnes J165]
gi|289158612|gb|EFD06819.1| DEAD/DEAH box helicase [Propionibacterium acnes J165]
Length = 917
Score = 37.7 bits (86), Expect = 1.5, Method: Composition-based stats.
Identities = 36/124 (29%), Positives = 55/124 (44%), Gaps = 17/124 (13%)
Query: 3 LRNKILLDLKPAQLAAVCASLVSE---GIKVRLWKNNSYIYEPSTTVINVINVLDEHRSS 59
+R + L QLAAV +++V E G + L + E + + + + R+
Sbjct: 773 IRRGVFDGLDCPQLAAVLSTIVHESRPGDRGHLHRMPDGKSEAAESQLRAV------RAE 826
Query: 60 FLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDD---GDLARLLRRTIDL 116
L+ H +E P LD F+ AWA+G +D LDD GD R +R+ DL
Sbjct: 827 IGLLERDHRIERPRDLDIGFAEASYAWAAGAG-----LDTVLDDMSAGDFVRRVRQVCDL 881
Query: 117 LAQI 120
QI
Sbjct: 882 AGQI 885
>gi|419421527|ref|ZP_13961755.1| putative helicase [Propionibacterium acnes PRP-38]
gi|422396796|ref|ZP_16476827.1| HelY [Propionibacterium acnes HL097PA1]
gi|327329991|gb|EGE71745.1| HelY [Propionibacterium acnes HL097PA1]
gi|379978018|gb|EIA11343.1| putative helicase [Propionibacterium acnes PRP-38]
Length = 917
Score = 37.7 bits (86), Expect = 1.5, Method: Composition-based stats.
Identities = 36/124 (29%), Positives = 55/124 (44%), Gaps = 17/124 (13%)
Query: 3 LRNKILLDLKPAQLAAVCASLVSE---GIKVRLWKNNSYIYEPSTTVINVINVLDEHRSS 59
+R + L QLAAV +++V E G + L + E + + + + R+
Sbjct: 773 IRRGVFDGLDCPQLAAVLSTIVHESRPGDRGHLHRMPDGKSEAAESQLRAV------RAG 826
Query: 60 FLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDD---GDLARLLRRTIDL 116
L+ H +E P LD F+ AWA+G +D LDD GD R +R+ DL
Sbjct: 827 IGLLERDHRIERPRDLDIGFAEASYAWAAGAG-----LDTVLDDMSAGDFVRRVRQVCDL 881
Query: 117 LAQI 120
QI
Sbjct: 882 AGQI 885
>gi|380302552|ref|ZP_09852245.1| superfamily II RNA helicase [Brachybacterium squillarum M-6-3]
Length = 954
Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 32/63 (50%)
Query: 64 QEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKL 123
Q +H +E D + +V+ WA G +++D L GD R R+ IDLL Q+
Sbjct: 870 QARHQLETTPPPDPSLASIVQRWARGEHLAAVLLDADLPPGDFVRHCRQVIDLLDQLTAD 929
Query: 124 PDV 126
P++
Sbjct: 930 PEL 932
>gi|313140229|ref|ZP_07802422.1| superfamily protein RNA helicase [Bifidobacterium bifidum NCIMB
41171]
gi|313132739|gb|EFR50356.1| superfamily protein RNA helicase [Bifidobacterium bifidum NCIMB
41171]
Length = 859
Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 62/151 (41%), Gaps = 14/151 (9%)
Query: 2 VLRNKILLDLKPAQLAAVCASLVSE-----GIKVRLWKNNSYIYEPSTTVINVINVLDEH 56
L + L QLAAV ++LV E G + R W I P V LD
Sbjct: 703 ALERGMFDHLTARQLAAVLSALVFEARGGTGGEPRRWPGG--IQGP---VAQTSQSLDRL 757
Query: 57 RSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDL 116
+ L E G++ LD ++ WASG + ++ D + GD R +R D+
Sbjct: 758 HAQLTMLCEDEGLDDLQQLDFGIVDIMYDWASGNSLAYVLHDRDMTGGDFVRNAKRLSDI 817
Query: 117 LAQI----PKLPDVDQRLQKNAVDASNVMDR 143
L QI P LP L + A A +++R
Sbjct: 818 LQQISAAEPYLPQGSAHLAQVAHKAMELVNR 848
>gi|422579216|ref|ZP_16654739.1| DEAD/DEAH box helicase [Propionibacterium acnes HL005PA4]
gi|314914924|gb|EFS78755.1| DEAD/DEAH box helicase [Propionibacterium acnes HL005PA4]
Length = 917
Score = 37.7 bits (86), Expect = 1.6, Method: Composition-based stats.
Identities = 36/124 (29%), Positives = 55/124 (44%), Gaps = 17/124 (13%)
Query: 3 LRNKILLDLKPAQLAAVCASLVSE---GIKVRLWKNNSYIYEPSTTVINVINVLDEHRSS 59
+R + L QLAAV +++V E G + L + E + + + + R+
Sbjct: 773 IRRGVFDGLDCPQLAAVLSTIVHESRPGDRGHLHRMPDGKSEAAESQLRAV------RAE 826
Query: 60 FLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDD---GDLARLLRRTIDL 116
L+ H +E P LD F+ AWA+G +D LDD GD R +R+ DL
Sbjct: 827 IGLLERDHRIERPRDLDIGFAEASYAWAAGAG-----LDTVLDDMSAGDFVRRVRQVCDL 881
Query: 117 LAQI 120
QI
Sbjct: 882 AGQI 885
>gi|50842859|ref|YP_056086.1| superfamily II RNA helicase [Propionibacterium acnes KPA171202]
gi|335053752|ref|ZP_08546583.1| DSHCT domain protein [Propionibacterium sp. 434-HC2]
gi|387503755|ref|YP_005944984.1| superfamily II RNA helicase [Propionibacterium acnes 6609]
gi|422456974|ref|ZP_16533636.1| DEAD/DEAH box helicase [Propionibacterium acnes HL030PA1]
gi|50840461|gb|AAT83128.1| superfamily II RNA helicase [Propionibacterium acnes KPA171202]
gi|315105965|gb|EFT77941.1| DEAD/DEAH box helicase [Propionibacterium acnes HL030PA1]
gi|333766421|gb|EGL43727.1| DSHCT domain protein [Propionibacterium sp. 434-HC2]
gi|335277800|gb|AEH29705.1| superfamily II RNA helicase [Propionibacterium acnes 6609]
Length = 917
Score = 37.7 bits (86), Expect = 1.6, Method: Composition-based stats.
Identities = 36/124 (29%), Positives = 55/124 (44%), Gaps = 17/124 (13%)
Query: 3 LRNKILLDLKPAQLAAVCASLVSE---GIKVRLWKNNSYIYEPSTTVINVINVLDEHRSS 59
+R + L QLAAV +++V E G + L + E + + + + R+
Sbjct: 773 IRRGVFDGLDCPQLAAVLSTIVHESRPGDRGHLHRMPDGKSEAAESQLRAV------RAE 826
Query: 60 FLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDD---GDLARLLRRTIDL 116
L+ H +E P LD F+ AWA+G +D LDD GD R +R+ DL
Sbjct: 827 IGLLERDHRIERPRDLDIGFAEASYAWAAGAG-----LDTVLDDMSAGDFVRRVRQVCDL 881
Query: 117 LAQI 120
QI
Sbjct: 882 AGQI 885
>gi|407935789|ref|YP_006851431.1| helicase [Propionibacterium acnes C1]
gi|407904370|gb|AFU41200.1| putative helicase [Propionibacterium acnes C1]
Length = 917
Score = 37.7 bits (86), Expect = 1.6, Method: Composition-based stats.
Identities = 36/124 (29%), Positives = 55/124 (44%), Gaps = 17/124 (13%)
Query: 3 LRNKILLDLKPAQLAAVCASLVSE---GIKVRLWKNNSYIYEPSTTVINVINVLDEHRSS 59
+R + L QLAAV +++V E G + L + E + + + + R+
Sbjct: 773 IRRGVFDGLDCPQLAAVLSTIVHESRPGDRGHLHRMPDGKSEAAESQLRAV------RAE 826
Query: 60 FLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDD---GDLARLLRRTIDL 116
L+ H +E P LD F+ AWA+G +D LDD GD R +R+ DL
Sbjct: 827 IGLLERDHRIERPRDLDIGFAEASYAWAAGAG-----LDTVLDDMSAGDFVRRVRQVCDL 881
Query: 117 LAQI 120
QI
Sbjct: 882 AGQI 885
>gi|386071112|ref|YP_005986008.1| putative helicase [Propionibacterium acnes ATCC 11828]
gi|353455478|gb|AER05997.1| putative helicase [Propionibacterium acnes ATCC 11828]
Length = 917
Score = 37.7 bits (86), Expect = 1.6, Method: Composition-based stats.
Identities = 36/124 (29%), Positives = 55/124 (44%), Gaps = 17/124 (13%)
Query: 3 LRNKILLDLKPAQLAAVCASLVSE---GIKVRLWKNNSYIYEPSTTVINVINVLDEHRSS 59
+R + L QLAAV +++V E G + L + E + + + + R+
Sbjct: 773 IRRGVFDGLDCPQLAAVLSTIVHESRPGDRGHLHRMPDGKSEAAESQLRAV------RAE 826
Query: 60 FLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDD---GDLARLLRRTIDL 116
L+ H +E P LD F+ AWA+G +D LDD GD R +R+ DL
Sbjct: 827 IGLLERDHRIERPRDLDIGFAEASYAWAAGAG-----LDTVLDDMSAGDFVRRVRQVCDL 881
Query: 117 LAQI 120
QI
Sbjct: 882 AGQI 885
>gi|422486206|ref|ZP_16562562.1| DEAD/DEAH box helicase [Propionibacterium acnes HL043PA2]
gi|327443881|gb|EGE90535.1| DEAD/DEAH box helicase [Propionibacterium acnes HL043PA2]
Length = 917
Score = 37.7 bits (86), Expect = 1.6, Method: Composition-based stats.
Identities = 36/124 (29%), Positives = 55/124 (44%), Gaps = 17/124 (13%)
Query: 3 LRNKILLDLKPAQLAAVCASLVSE---GIKVRLWKNNSYIYEPSTTVINVINVLDEHRSS 59
+R + L QLAAV +++V E G + L + E + + + + R+
Sbjct: 773 IRRGVFDGLDCPQLAAVLSTIVHESRPGDRGHLHRMPDGKSEAAESQLRAV------RAE 826
Query: 60 FLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDD---GDLARLLRRTIDL 116
L+ H +E P LD F+ AWA+G +D LDD GD R +R+ DL
Sbjct: 827 IGLLERDHRIERPRDLDIGFAEASYAWAAGAG-----LDTVLDDMSAGDFVRRVRQVCDL 881
Query: 117 LAQI 120
QI
Sbjct: 882 AGQI 885
>gi|422575551|ref|ZP_16651089.1| DSHCT domain protein, partial [Propionibacterium acnes HL001PA1]
gi|314923625|gb|EFS87456.1| DSHCT domain protein [Propionibacterium acnes HL001PA1]
Length = 647
Score = 37.7 bits (86), Expect = 1.6, Method: Composition-based stats.
Identities = 36/124 (29%), Positives = 55/124 (44%), Gaps = 17/124 (13%)
Query: 3 LRNKILLDLKPAQLAAVCASLVSE---GIKVRLWKNNSYIYEPSTTVINVINVLDEHRSS 59
+R + L QLAAV +++V E G + L + E + + + + R+
Sbjct: 503 IRRGVFDGLDCPQLAAVLSTIVHESRPGDRGHLHRMPDGKSEAAESQLRAV------RAE 556
Query: 60 FLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDD---GDLARLLRRTIDL 116
L+ H +E P LD F+ AWA+G +D LDD GD R +R+ DL
Sbjct: 557 IGLLERDHRIERPRDLDIGFAEASYAWAAGAG-----LDTVLDDMSAGDFVRRVRQVCDL 611
Query: 117 LAQI 120
QI
Sbjct: 612 AGQI 615
>gi|422465596|ref|ZP_16542189.1| DSHCT domain protein, partial [Propionibacterium acnes HL110PA4]
gi|315092450|gb|EFT64426.1| DSHCT domain protein [Propionibacterium acnes HL110PA4]
Length = 648
Score = 37.7 bits (86), Expect = 1.6, Method: Composition-based stats.
Identities = 36/124 (29%), Positives = 55/124 (44%), Gaps = 17/124 (13%)
Query: 3 LRNKILLDLKPAQLAAVCASLVSE---GIKVRLWKNNSYIYEPSTTVINVINVLDEHRSS 59
+R + L QLAAV +++V E G + L + E + + + + R+
Sbjct: 504 IRRGVFDGLDCPQLAAVLSTIVHESRPGDRGHLHRMPDGKSEAAESQLRAV------RAE 557
Query: 60 FLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDD---GDLARLLRRTIDL 116
L+ H +E P LD F+ AWA+G +D LDD GD R +R+ DL
Sbjct: 558 IGLLERDHRIERPRDLDIGFAEASYAWAAGAG-----LDTVLDDMSAGDFVRRVRQVCDL 612
Query: 117 LAQI 120
QI
Sbjct: 613 AGQI 616
>gi|422468056|ref|ZP_16544595.1| DSHCT domain protein, partial [Propionibacterium acnes HL110PA3]
gi|314983230|gb|EFT27322.1| DSHCT domain protein [Propionibacterium acnes HL110PA3]
Length = 651
Score = 37.7 bits (86), Expect = 1.6, Method: Composition-based stats.
Identities = 36/124 (29%), Positives = 55/124 (44%), Gaps = 17/124 (13%)
Query: 3 LRNKILLDLKPAQLAAVCASLVSE---GIKVRLWKNNSYIYEPSTTVINVINVLDEHRSS 59
+R + L QLAAV +++V E G + L + E + + + + R+
Sbjct: 507 IRRGVFDGLDCPQLAAVLSTIVHESRPGDRGHLHRMPDGKSEAAESQLRAV------RAE 560
Query: 60 FLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDD---GDLARLLRRTIDL 116
L+ H +E P LD F+ AWA+G +D LDD GD R +R+ DL
Sbjct: 561 IGLLERDHRIERPRDLDIGFAEASYAWAAGAG-----LDTVLDDMSAGDFVRRVRQVCDL 615
Query: 117 LAQI 120
QI
Sbjct: 616 AGQI 619
>gi|422545031|ref|ZP_16620861.1| DEAD/DEAH box helicase [Propionibacterium acnes HL082PA1]
gi|314963152|gb|EFT07252.1| DEAD/DEAH box helicase [Propionibacterium acnes HL082PA1]
Length = 917
Score = 37.7 bits (86), Expect = 1.6, Method: Composition-based stats.
Identities = 36/124 (29%), Positives = 55/124 (44%), Gaps = 17/124 (13%)
Query: 3 LRNKILLDLKPAQLAAVCASLVSE---GIKVRLWKNNSYIYEPSTTVINVINVLDEHRSS 59
+R + L QLAAV +++V E G + L + E + + + + R+
Sbjct: 773 IRRGVFDGLDCPQLAAVLSTIVHESRPGDRGHLHRMPDGKSEAAESQLRAV------RAE 826
Query: 60 FLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDD---GDLARLLRRTIDL 116
L+ H +E P LD F+ AWA+G +D LDD GD R +R+ DL
Sbjct: 827 IGLLERDHRIERPRDLDIGFAEASYAWAAGAG-----LDTVLDDMSAGDFVRRVRQVCDL 881
Query: 117 LAQI 120
QI
Sbjct: 882 AGQI 885
>gi|422493681|ref|ZP_16569981.1| DEAD/DEAH box helicase [Propionibacterium acnes HL086PA1]
gi|313838257|gb|EFS75971.1| DEAD/DEAH box helicase [Propionibacterium acnes HL086PA1]
Length = 917
Score = 37.7 bits (86), Expect = 1.6, Method: Composition-based stats.
Identities = 36/124 (29%), Positives = 55/124 (44%), Gaps = 17/124 (13%)
Query: 3 LRNKILLDLKPAQLAAVCASLVSE---GIKVRLWKNNSYIYEPSTTVINVINVLDEHRSS 59
+R + L QLAAV +++V E G + L + E + + + + R+
Sbjct: 773 IRRGVFDGLDCPQLAAVLSTIVHESRPGDRGHLHRMPDGKSEAAESQLRAV------RAE 826
Query: 60 FLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDD---GDLARLLRRTIDL 116
L+ H +E P LD F+ AWA+G +D LDD GD R +R+ DL
Sbjct: 827 IGLLERDHRIERPRDLDIGFAEASYAWAAGAG-----LDTVLDDMSAGDFVRRVRQVCDL 881
Query: 117 LAQI 120
QI
Sbjct: 882 AGQI 885
>gi|354607342|ref|ZP_09025312.1| hypothetical protein HMPREF1003_01879 [Propionibacterium sp.
5_U_42AFAA]
gi|386024336|ref|YP_005942641.1| putative helicase HelY [Propionibacterium acnes 266]
gi|422385793|ref|ZP_16465918.1| putative ATP-dependent RNA helicase [Propionibacterium acnes
HL096PA3]
gi|422449464|ref|ZP_16526189.1| DEAD/DEAH box helicase [Propionibacterium acnes HL036PA3]
gi|422481002|ref|ZP_16557405.1| DEAD/DEAH box helicase [Propionibacterium acnes HL063PA1]
gi|422483509|ref|ZP_16559898.1| DEAD/DEAH box helicase [Propionibacterium acnes HL036PA1]
gi|422488259|ref|ZP_16564588.1| DEAD/DEAH box helicase [Propionibacterium acnes HL013PA2]
gi|422490362|ref|ZP_16566677.1| DEAD/DEAH box helicase [Propionibacterium acnes HL020PA1]
gi|422498131|ref|ZP_16574403.1| DEAD/DEAH box helicase [Propionibacterium acnes HL002PA3]
gi|422505892|ref|ZP_16582115.1| DEAD/DEAH box helicase [Propionibacterium acnes HL036PA2]
gi|422507318|ref|ZP_16583522.1| DEAD/DEAH box helicase [Propionibacterium acnes HL046PA2]
gi|422513760|ref|ZP_16589883.1| DEAD/DEAH box helicase [Propionibacterium acnes HL087PA2]
gi|422551862|ref|ZP_16627653.1| DEAD/DEAH box helicase [Propionibacterium acnes HL005PA3]
gi|422555896|ref|ZP_16631658.1| DEAD/DEAH box helicase [Propionibacterium acnes HL005PA2]
gi|422568274|ref|ZP_16643892.1| DEAD/DEAH box helicase [Propionibacterium acnes HL002PA2]
gi|313807138|gb|EFS45633.1| DEAD/DEAH box helicase [Propionibacterium acnes HL087PA2]
gi|313819334|gb|EFS57048.1| DEAD/DEAH box helicase [Propionibacterium acnes HL046PA2]
gi|313819983|gb|EFS57697.1| DEAD/DEAH box helicase [Propionibacterium acnes HL036PA1]
gi|313823224|gb|EFS60938.1| DEAD/DEAH box helicase [Propionibacterium acnes HL036PA2]
gi|313824987|gb|EFS62701.1| DEAD/DEAH box helicase [Propionibacterium acnes HL063PA1]
gi|314924822|gb|EFS88653.1| DEAD/DEAH box helicase [Propionibacterium acnes HL036PA3]
gi|314960620|gb|EFT04722.1| DEAD/DEAH box helicase [Propionibacterium acnes HL002PA2]
gi|314986240|gb|EFT30332.1| DEAD/DEAH box helicase [Propionibacterium acnes HL005PA2]
gi|314989545|gb|EFT33636.1| DEAD/DEAH box helicase [Propionibacterium acnes HL005PA3]
gi|315086014|gb|EFT57990.1| DEAD/DEAH box helicase [Propionibacterium acnes HL002PA3]
gi|327327909|gb|EGE69683.1| putative ATP-dependent RNA helicase [Propionibacterium acnes
HL096PA3]
gi|327443949|gb|EGE90603.1| DEAD/DEAH box helicase [Propionibacterium acnes HL013PA2]
gi|328755038|gb|EGF68654.1| DEAD/DEAH box helicase [Propionibacterium acnes HL020PA1]
gi|332675794|gb|AEE72610.1| putative helicase HelY [Propionibacterium acnes 266]
gi|353557457|gb|EHC26826.1| hypothetical protein HMPREF1003_01879 [Propionibacterium sp.
5_U_42AFAA]
Length = 917
Score = 37.7 bits (86), Expect = 1.6, Method: Composition-based stats.
Identities = 36/124 (29%), Positives = 55/124 (44%), Gaps = 17/124 (13%)
Query: 3 LRNKILLDLKPAQLAAVCASLVSE---GIKVRLWKNNSYIYEPSTTVINVINVLDEHRSS 59
+R + L QLAAV +++V E G + L + E + + + + R+
Sbjct: 773 IRRGVFDGLDCPQLAAVLSTIVHESRPGDRGHLHRMPDGKSEAAESQLRAV------RAE 826
Query: 60 FLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDD---GDLARLLRRTIDL 116
L+ H +E P LD F+ AWA+G +D LDD GD R +R+ DL
Sbjct: 827 IGLLERDHRIERPRDLDIGFAEASYAWAAGAG-----LDTVLDDMSAGDFVRRVRQVCDL 881
Query: 117 LAQI 120
QI
Sbjct: 882 AGQI 885
>gi|422462241|ref|ZP_16538865.1| DSHCT domain protein, partial [Propionibacterium acnes HL038PA1]
gi|315095753|gb|EFT67729.1| DSHCT domain protein [Propionibacterium acnes HL038PA1]
Length = 623
Score = 37.7 bits (86), Expect = 1.6, Method: Composition-based stats.
Identities = 36/124 (29%), Positives = 55/124 (44%), Gaps = 17/124 (13%)
Query: 3 LRNKILLDLKPAQLAAVCASLVSE---GIKVRLWKNNSYIYEPSTTVINVINVLDEHRSS 59
+R + L QLAAV +++V E G + L + E + + + + R+
Sbjct: 479 IRRGVFDGLDCPQLAAVLSTIVHESRPGDRGHLHRMPDGKSEAAESQLRAV------RAE 532
Query: 60 FLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDD---GDLARLLRRTIDL 116
L+ H +E P LD F+ AWA+G +D LDD GD R +R+ DL
Sbjct: 533 IGLLERDHRIERPRDLDIGFAEASYAWAAGAG-----LDTVLDDMSAGDFVRRVRQVCDL 587
Query: 117 LAQI 120
QI
Sbjct: 588 AGQI 591
>gi|422539058|ref|ZP_16614931.1| DEAD/DEAH box helicase [Propionibacterium acnes HL013PA1]
gi|313764063|gb|EFS35427.1| DEAD/DEAH box helicase [Propionibacterium acnes HL013PA1]
Length = 917
Score = 37.7 bits (86), Expect = 1.6, Method: Composition-based stats.
Identities = 36/124 (29%), Positives = 55/124 (44%), Gaps = 17/124 (13%)
Query: 3 LRNKILLDLKPAQLAAVCASLVSE---GIKVRLWKNNSYIYEPSTTVINVINVLDEHRSS 59
+R + L QLAAV +++V E G + L + E + + + + R+
Sbjct: 773 IRRGVFDGLDCPQLAAVLSTIVHESRPGDRGHLHRMPDGKSEAAESQLRAV------RAE 826
Query: 60 FLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDD---GDLARLLRRTIDL 116
L+ H +E P LD F+ AWA+G +D LDD GD R +R+ DL
Sbjct: 827 IGLLERDHRIERPRDLDIGFAEASYAWAAGAG-----LDTVLDDMSAGDFVRRVRQVCDL 881
Query: 117 LAQI 120
QI
Sbjct: 882 AGQI 885
>gi|289425376|ref|ZP_06427153.1| DEAD/DEAH box helicase [Propionibacterium acnes SK187]
gi|365963071|ref|YP_004944637.1| superfamily II RNA helicase [Propionibacterium acnes TypeIA2
P.acn31]
gi|365965312|ref|YP_004946877.1| superfamily II RNA helicase [Propionibacterium acnes TypeIA2
P.acn17]
gi|365974245|ref|YP_004955804.1| superfamily II RNA helicase [Propionibacterium acnes TypeIA2
P.acn33]
gi|422427690|ref|ZP_16504601.1| DEAD/DEAH box helicase [Propionibacterium acnes HL087PA1]
gi|422433569|ref|ZP_16510437.1| DEAD/DEAH box helicase [Propionibacterium acnes HL059PA2]
gi|422436141|ref|ZP_16512998.1| DEAD/DEAH box helicase [Propionibacterium acnes HL083PA2]
gi|422438458|ref|ZP_16515302.1| DEAD/DEAH box helicase [Propionibacterium acnes HL092PA1]
gi|422444448|ref|ZP_16521242.1| DEAD/DEAH box helicase [Propionibacterium acnes HL002PA1]
gi|422445150|ref|ZP_16521904.1| DEAD/DEAH box helicase [Propionibacterium acnes HL027PA1]
gi|422453729|ref|ZP_16530416.1| DEAD/DEAH box helicase [Propionibacterium acnes HL087PA3]
gi|422501714|ref|ZP_16577968.1| DEAD/DEAH box helicase [Propionibacterium acnes HL063PA2]
gi|422510256|ref|ZP_16586402.1| DEAD/DEAH box helicase [Propionibacterium acnes HL059PA1]
gi|422516643|ref|ZP_16592752.1| DEAD/DEAH box helicase [Propionibacterium acnes HL110PA2]
gi|422524000|ref|ZP_16600009.1| DEAD/DEAH box helicase [Propionibacterium acnes HL053PA2]
gi|422531964|ref|ZP_16607910.1| DEAD/DEAH box helicase [Propionibacterium acnes HL110PA1]
gi|422543279|ref|ZP_16619129.1| DEAD/DEAH box helicase [Propionibacterium acnes HL037PA1]
gi|422548203|ref|ZP_16624019.1| DEAD/DEAH box helicase [Propionibacterium acnes HL050PA3]
gi|422550092|ref|ZP_16625892.1| DEAD/DEAH box helicase [Propionibacterium acnes HL050PA1]
gi|422558612|ref|ZP_16634352.1| DEAD/DEAH box helicase [Propionibacterium acnes HL025PA2]
gi|422562665|ref|ZP_16638342.1| DEAD/DEAH box helicase [Propionibacterium acnes HL046PA1]
gi|422571695|ref|ZP_16647276.1| DEAD/DEAH box helicase [Propionibacterium acnes HL067PA1]
gi|289154354|gb|EFD03042.1| DEAD/DEAH box helicase [Propionibacterium acnes SK187]
gi|313792458|gb|EFS40551.1| DEAD/DEAH box helicase [Propionibacterium acnes HL110PA1]
gi|313801496|gb|EFS42745.1| DEAD/DEAH box helicase [Propionibacterium acnes HL110PA2]
gi|313816413|gb|EFS54127.1| DEAD/DEAH box helicase [Propionibacterium acnes HL059PA1]
gi|313827289|gb|EFS65003.1| DEAD/DEAH box helicase [Propionibacterium acnes HL063PA2]
gi|314917850|gb|EFS81681.1| DEAD/DEAH box helicase [Propionibacterium acnes HL050PA1]
gi|314919739|gb|EFS83570.1| DEAD/DEAH box helicase [Propionibacterium acnes HL050PA3]
gi|314930018|gb|EFS93849.1| DEAD/DEAH box helicase [Propionibacterium acnes HL067PA1]
gi|314956405|gb|EFT00717.1| DEAD/DEAH box helicase [Propionibacterium acnes HL027PA1]
gi|314957274|gb|EFT01377.1| DEAD/DEAH box helicase [Propionibacterium acnes HL002PA1]
gi|314967723|gb|EFT11822.1| DEAD/DEAH box helicase [Propionibacterium acnes HL037PA1]
gi|315078215|gb|EFT50258.1| DEAD/DEAH box helicase [Propionibacterium acnes HL053PA2]
gi|315098195|gb|EFT70171.1| DEAD/DEAH box helicase [Propionibacterium acnes HL059PA2]
gi|315101650|gb|EFT73626.1| DEAD/DEAH box helicase [Propionibacterium acnes HL046PA1]
gi|327452354|gb|EGE99008.1| DEAD/DEAH box helicase [Propionibacterium acnes HL087PA3]
gi|327452770|gb|EGE99424.1| DEAD/DEAH box helicase [Propionibacterium acnes HL083PA2]
gi|327453522|gb|EGF00177.1| DEAD/DEAH box helicase [Propionibacterium acnes HL092PA1]
gi|328752637|gb|EGF66253.1| DEAD/DEAH box helicase [Propionibacterium acnes HL025PA2]
gi|328753810|gb|EGF67426.1| DEAD/DEAH box helicase [Propionibacterium acnes HL087PA1]
gi|365739752|gb|AEW83954.1| superfamily II RNA helicase [Propionibacterium acnes TypeIA2
P.acn31]
gi|365741993|gb|AEW81687.1| superfamily II RNA helicase [Propionibacterium acnes TypeIA2
P.acn17]
gi|365744244|gb|AEW79441.1| superfamily II RNA helicase [Propionibacterium acnes TypeIA2
P.acn33]
Length = 917
Score = 37.7 bits (86), Expect = 1.6, Method: Composition-based stats.
Identities = 36/124 (29%), Positives = 55/124 (44%), Gaps = 17/124 (13%)
Query: 3 LRNKILLDLKPAQLAAVCASLVSE---GIKVRLWKNNSYIYEPSTTVINVINVLDEHRSS 59
+R + L QLAAV +++V E G + L + E + + + + R+
Sbjct: 773 IRRGVFDGLDCPQLAAVLSTIVHESRPGDRGHLHRMPDGKSEAAESQLRAV------RAE 826
Query: 60 FLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDD---GDLARLLRRTIDL 116
L+ H +E P LD F+ AWA+G +D LDD GD R +R+ DL
Sbjct: 827 IGLLERDHRIERPRDLDIGFAEASYAWAAGAG-----LDTVLDDMSAGDFVRRVRQVCDL 881
Query: 117 LAQI 120
QI
Sbjct: 882 AGQI 885
>gi|282853649|ref|ZP_06262986.1| DEAD/DEAH box helicase [Propionibacterium acnes J139]
gi|282583102|gb|EFB88482.1| DEAD/DEAH box helicase [Propionibacterium acnes J139]
Length = 917
Score = 37.7 bits (86), Expect = 1.6, Method: Composition-based stats.
Identities = 36/124 (29%), Positives = 55/124 (44%), Gaps = 17/124 (13%)
Query: 3 LRNKILLDLKPAQLAAVCASLVSE---GIKVRLWKNNSYIYEPSTTVINVINVLDEHRSS 59
+R + L QLAAV +++V E G + L + E + + + + R+
Sbjct: 773 IRRGVFDGLDCPQLAAVLSTIVHESRPGDRGHLHRMPDGKSEAAESQLRAV------RAE 826
Query: 60 FLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDD---GDLARLLRRTIDL 116
L+ H +E P LD F+ AWA+G +D LDD GD R +R+ DL
Sbjct: 827 IGLLERDHRIERPRDLDIGFAEASYAWAAGAG-----LDTVLDDMSAGDFVRRVRQVCDL 881
Query: 117 LAQI 120
QI
Sbjct: 882 AGQI 885
>gi|295130913|ref|YP_003581576.1| putative helicase [Propionibacterium acnes SK137]
gi|417929614|ref|ZP_12572998.1| type III restriction enzyme, res subunit [Propionibacterium acnes
SK182]
gi|422387607|ref|ZP_16467719.1| putative ATP-dependent RNA helicase [Propionibacterium acnes
HL096PA2]
gi|422392386|ref|ZP_16472456.1| putative ATP-dependent RNA helicase [Propionibacterium acnes
HL099PA1]
gi|422426215|ref|ZP_16503139.1| DEAD/DEAH box helicase [Propionibacterium acnes HL043PA1]
gi|422475485|ref|ZP_16551932.1| DEAD/DEAH box helicase [Propionibacterium acnes HL056PA1]
gi|422478627|ref|ZP_16555046.1| DEAD/DEAH box helicase [Propionibacterium acnes HL007PA1]
gi|422518975|ref|ZP_16595043.1| DEAD/DEAH box helicase [Propionibacterium acnes HL074PA1]
gi|422522233|ref|ZP_16598263.1| DEAD/DEAH box helicase [Propionibacterium acnes HL045PA1]
gi|422527618|ref|ZP_16603608.1| DEAD/DEAH box helicase [Propionibacterium acnes HL083PA1]
gi|422530163|ref|ZP_16606127.1| DEAD/DEAH box helicase [Propionibacterium acnes HL053PA1]
gi|422560613|ref|ZP_16636300.1| DEAD/DEAH box helicase [Propionibacterium acnes HL005PA1]
gi|291375376|gb|ADD99230.1| putative helicase [Propionibacterium acnes SK137]
gi|313771905|gb|EFS37871.1| DEAD/DEAH box helicase [Propionibacterium acnes HL074PA1]
gi|313809630|gb|EFS47366.1| DEAD/DEAH box helicase [Propionibacterium acnes HL083PA1]
gi|313829950|gb|EFS67664.1| DEAD/DEAH box helicase [Propionibacterium acnes HL007PA1]
gi|313833045|gb|EFS70759.1| DEAD/DEAH box helicase [Propionibacterium acnes HL056PA1]
gi|314972883|gb|EFT16980.1| DEAD/DEAH box helicase [Propionibacterium acnes HL053PA1]
gi|314975694|gb|EFT19789.1| DEAD/DEAH box helicase [Propionibacterium acnes HL045PA1]
gi|314984122|gb|EFT28214.1| DEAD/DEAH box helicase [Propionibacterium acnes HL005PA1]
gi|327330048|gb|EGE71801.1| putative ATP-dependent RNA helicase [Propionibacterium acnes
HL096PA2]
gi|327442720|gb|EGE89374.1| DEAD/DEAH box helicase [Propionibacterium acnes HL043PA1]
gi|328761431|gb|EGF74957.1| putative ATP-dependent RNA helicase [Propionibacterium acnes
HL099PA1]
gi|340773737|gb|EGR96229.1| type III restriction enzyme, res subunit [Propionibacterium acnes
SK182]
Length = 917
Score = 37.7 bits (86), Expect = 1.6, Method: Composition-based stats.
Identities = 36/124 (29%), Positives = 55/124 (44%), Gaps = 17/124 (13%)
Query: 3 LRNKILLDLKPAQLAAVCASLVSE---GIKVRLWKNNSYIYEPSTTVINVINVLDEHRSS 59
+R + L QLAAV +++V E G + L + E + + + + R+
Sbjct: 773 IRRGVFDGLDCPQLAAVLSTIVHESRPGDRGHLHRMPDGKSEAAESQLRAV------RAE 826
Query: 60 FLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDD---GDLARLLRRTIDL 116
L+ H +E P LD F+ AWA+G +D LDD GD R +R+ DL
Sbjct: 827 IGLLERDHRIERPRDLDIGFAEASYAWAAGAG-----LDTVLDDMSAGDFVRRVRQVCDL 881
Query: 117 LAQI 120
QI
Sbjct: 882 AGQI 885
>gi|422450854|ref|ZP_16527567.1| DEAD/DEAH box helicase [Propionibacterium acnes HL030PA2]
gi|315109469|gb|EFT81445.1| DEAD/DEAH box helicase [Propionibacterium acnes HL030PA2]
Length = 917
Score = 37.7 bits (86), Expect = 1.6, Method: Composition-based stats.
Identities = 36/124 (29%), Positives = 55/124 (44%), Gaps = 17/124 (13%)
Query: 3 LRNKILLDLKPAQLAAVCASLVSE---GIKVRLWKNNSYIYEPSTTVINVINVLDEHRSS 59
+R + L QLAAV +++V E G + L + E + + + + R+
Sbjct: 773 IRRGVFDGLDCPQLAAVLSTIVHESRPGDRGHLHRMPDGKSEAAESQLRAV------RAE 826
Query: 60 FLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDD---GDLARLLRRTIDL 116
L+ H +E P LD F+ AWA+G +D LDD GD R +R+ DL
Sbjct: 827 IGLLERDHRIERPRDLDIGFAEASYAWAAGAG-----LDTVLDDMSAGDFVRRVRQVCDL 881
Query: 117 LAQI 120
QI
Sbjct: 882 AGQI 885
>gi|422459132|ref|ZP_16535780.1| DEAD/DEAH box helicase [Propionibacterium acnes HL050PA2]
gi|315103795|gb|EFT75771.1| DEAD/DEAH box helicase [Propionibacterium acnes HL050PA2]
Length = 917
Score = 37.7 bits (86), Expect = 1.6, Method: Composition-based stats.
Identities = 36/124 (29%), Positives = 55/124 (44%), Gaps = 17/124 (13%)
Query: 3 LRNKILLDLKPAQLAAVCASLVSE---GIKVRLWKNNSYIYEPSTTVINVINVLDEHRSS 59
+R + L QLAAV +++V E G + L + E + + + + R+
Sbjct: 773 IRRGVFDGLDCPQLAAVLSTIVHESRPGDRGHLHRMPDGKSEAAESQLRAV------RAE 826
Query: 60 FLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDD---GDLARLLRRTIDL 116
L+ H +E P LD F+ AWA+G +D LDD GD R +R+ DL
Sbjct: 827 IGLLERDHRIERPRDLDIGFAEASYAWAAGAG-----LDTVLDDMSAGDFVRRVRQVCDL 881
Query: 117 LAQI 120
QI
Sbjct: 882 AGQI 885
>gi|422501935|ref|ZP_16578180.1| DEAD/DEAH box helicase [Propionibacterium acnes HL027PA2]
gi|315084841|gb|EFT56817.1| DEAD/DEAH box helicase [Propionibacterium acnes HL027PA2]
Length = 917
Score = 37.7 bits (86), Expect = 1.6, Method: Composition-based stats.
Identities = 36/124 (29%), Positives = 55/124 (44%), Gaps = 17/124 (13%)
Query: 3 LRNKILLDLKPAQLAAVCASLVSE---GIKVRLWKNNSYIYEPSTTVINVINVLDEHRSS 59
+R + L QLAAV +++V E G + L + E + + + + R+
Sbjct: 773 IRRGVFDGLDCPQLAAVLSTIVHESRPGDRGHLHRMPDGKSEAAESQLRAV------RAE 826
Query: 60 FLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDD---GDLARLLRRTIDL 116
L+ H +E P LD F+ AWA+G +D LDD GD R +R+ DL
Sbjct: 827 IGLLERDHRIERPRDLDIGFAEASYAWAAGAG-----LDTVLDDMSAGDFVRRVRQVCDL 881
Query: 117 LAQI 120
QI
Sbjct: 882 AGQI 885
>gi|422390285|ref|ZP_16470380.1| HelY [Propionibacterium acnes HL103PA1]
gi|422465274|ref|ZP_16541881.1| DEAD/DEAH box helicase [Propionibacterium acnes HL060PA1]
gi|422564375|ref|ZP_16640026.1| DEAD/DEAH box helicase [Propionibacterium acnes HL082PA2]
gi|314967064|gb|EFT11163.1| DEAD/DEAH box helicase [Propionibacterium acnes HL082PA2]
gi|315092732|gb|EFT64708.1| DEAD/DEAH box helicase [Propionibacterium acnes HL060PA1]
gi|327327198|gb|EGE68974.1| HelY [Propionibacterium acnes HL103PA1]
Length = 917
Score = 37.7 bits (86), Expect = 1.6, Method: Composition-based stats.
Identities = 36/124 (29%), Positives = 55/124 (44%), Gaps = 17/124 (13%)
Query: 3 LRNKILLDLKPAQLAAVCASLVSE---GIKVRLWKNNSYIYEPSTTVINVINVLDEHRSS 59
+R + L QLAAV +++V E G + L + E + + + + R+
Sbjct: 773 IRRGVFDGLDCPQLAAVLSTIVHESRPGDRGHLHRMPDGKSEAAESQLRAV------RAE 826
Query: 60 FLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDD---GDLARLLRRTIDL 116
L+ H +E P LD F+ AWA+G +D LDD GD R +R+ DL
Sbjct: 827 IGLLERDHRIERPRDLDIGFAEASYAWAAGAG-----LDTVLDDMSAGDFVRRVRQVCDL 881
Query: 117 LAQI 120
QI
Sbjct: 882 AGQI 885
>gi|443628832|ref|ZP_21113172.1| putative Helicase [Streptomyces viridochromogenes Tue57]
gi|443337703|gb|ELS52005.1| putative Helicase [Streptomyces viridochromogenes Tue57]
Length = 950
Score = 37.7 bits (86), Expect = 1.8, Method: Composition-based stats.
Identities = 41/147 (27%), Positives = 62/147 (42%), Gaps = 18/147 (12%)
Query: 3 LRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTT-------VINVINVLDE 55
LR ++ L PA+LAA ++LV E R+ + PS ++ + LD
Sbjct: 798 LRERVWEGLGPAELAACVSALVYEA---RVGDDAMAPKLPSGKAKAALGEMVRIWGRLDA 854
Query: 56 HRSSFLELQ-EKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTI 114
F Q E G P D F+ WASG E++ + + GD R ++ I
Sbjct: 855 LEEDFRITQTEGVGQREP---DLGFAWAAYMWASGKGLDEVLREAEMPAGDFVRWCKQVI 911
Query: 115 DLLAQIPKLPDVD----QRLQKNAVDA 137
D+L QI V+ + + AVDA
Sbjct: 912 DVLGQISAASPVEGSTVAKSARKAVDA 938
>gi|383831485|ref|ZP_09986574.1| superfamily II RNA helicase [Saccharomonospora xinjiangensis XJ-54]
gi|383464138|gb|EID56228.1| superfamily II RNA helicase [Saccharomonospora xinjiangensis XJ-54]
Length = 946
Score = 37.7 bits (86), Expect = 1.8, Method: Composition-based stats.
Identities = 37/146 (25%), Positives = 65/146 (44%), Gaps = 9/146 (6%)
Query: 3 LRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVINVLDEHRSSFLE 62
+R ++ L PA+LAAV ++LV E + ++ ST + V + +E
Sbjct: 797 IRQRLWHGLAPAELAAVVSTLVYEARRDATTESKLPAGPVSTAWQETVRVW----TDLVE 852
Query: 63 LQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDC-----ALDDGDLARLLRRTIDLL 117
+ +H ++ D+ F+ V WA G T +++ L GD R R+ +DLL
Sbjct: 853 DERRHRLDRTREPDAGFAWPVYRWARGETLEKVLTAAEVNGQELSAGDFVRWSRQVVDLL 912
Query: 118 AQIPKLPDVDQRLQKNAVDASNVMDR 143
QI + + + A AS ++ R
Sbjct: 913 DQIKDVLGREHPVGGAAGKASRLLRR 938
>gi|257056196|ref|YP_003134028.1| superfamily II RNA helicase [Saccharomonospora viridis DSM 43017]
gi|256586068|gb|ACU97201.1| superfamily II RNA helicase [Saccharomonospora viridis DSM 43017]
Length = 918
Score = 37.4 bits (85), Expect = 1.8, Method: Composition-based stats.
Identities = 36/146 (24%), Positives = 64/146 (43%), Gaps = 9/146 (6%)
Query: 3 LRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVINVLDEHRSSFLE 62
+R ++ L PA+LAAV ++LV E + + + P+ V S +E
Sbjct: 769 IRQRVWHGLAPAELAAVVSTLVYEARR----DSTAEAKVPAGPVNKAWQETVRLWSDLVE 824
Query: 63 LQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDC-----ALDDGDLARLLRRTIDLL 117
+ +H ++ D+ F+ V WA G + +++ L GD R R+ +DLL
Sbjct: 825 DERRHRLDPTREPDAGFAWPVYRWARGESLEKVLTSAEVNGQELSAGDFVRWSRQVVDLL 884
Query: 118 AQIPKLPDVDQRLQKNAVDASNVMDR 143
QI + + + A AS ++ R
Sbjct: 885 EQIRDVLGKEHPVGGAAGKASRLLRR 910
>gi|334337044|ref|YP_004542196.1| DEAD/DEAH box helicase [Isoptericola variabilis 225]
gi|334107412|gb|AEG44302.1| DEAD/DEAH box helicase domain protein [Isoptericola variabilis 225]
Length = 960
Score = 37.4 bits (85), Expect = 1.9, Method: Composition-based stats.
Identities = 32/123 (26%), Positives = 53/123 (43%), Gaps = 7/123 (5%)
Query: 3 LRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVINVLDEHR---SS 59
LR L PA LAA +++V G + + Y P + + LDE S
Sbjct: 814 LRRGTWDGLGPADLAAAVSTVVYSGRR----EEPVEPYVPGGPAGRLAHALDETVRVWSQ 869
Query: 60 FLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQ 119
+L+ +H +E+ LD V WASG ++ + GD R ++ +D+L Q
Sbjct: 870 VTDLESEHRLEVTGPLDLGLVAPVHRWASGKGLDAVLRGTDVAAGDFVRWCKQVVDVLDQ 929
Query: 120 IPK 122
+ +
Sbjct: 930 LAQ 932
>gi|392942085|ref|ZP_10307727.1| superfamily II RNA helicase [Frankia sp. QA3]
gi|392285379|gb|EIV91403.1| superfamily II RNA helicase [Frankia sp. QA3]
Length = 1051
Score = 37.4 bits (85), Expect = 1.9, Method: Composition-based stats.
Identities = 42/155 (27%), Positives = 63/155 (40%), Gaps = 29/155 (18%)
Query: 3 LRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVI---------NVL 53
LR I DL LAA +SLV +EP + V + L
Sbjct: 903 LRTGIWEDLSAPALAAAVSSLV---------------FEPRGDDVGVPALPGGAALRDCL 947
Query: 54 DEH-RSSF--LELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALD--DGDLAR 108
DE R +F E ++ H + + F WA G ++ D L+ GD R
Sbjct: 948 DEMGRLAFRLAETEQGHRLAFLRPPELGFVPAAHDWAVGRPLERVLTDSGLELTAGDFVR 1007
Query: 109 LLRRTIDLLAQIPKLPDVDQRLQKNAVDASNVMDR 143
+R+ +DLL QI K+ D R+++ A A + + R
Sbjct: 1008 WMRQLLDLLDQIAKVAPDDSRVRRTARAAMDALRR 1042
>gi|343927930|ref|ZP_08767396.1| putative helicase [Gordonia alkanivorans NBRC 16433]
gi|343762153|dbj|GAA14322.1| putative helicase [Gordonia alkanivorans NBRC 16433]
Length = 942
Score = 37.4 bits (85), Expect = 2.0, Method: Composition-based stats.
Identities = 29/91 (31%), Positives = 38/91 (41%), Gaps = 5/91 (5%)
Query: 58 SSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCA-----LDDGDLARLLRR 112
S ++ +H V D+ FS V WASG + E ++ L GD R R+
Sbjct: 844 SKVTAVESRHRVSPTREPDTGFSLAVATWASGRSLSEALLLAGERGQLLSPGDFVRWNRQ 903
Query: 113 TIDLLAQIPKLPDVDQRLQKNAVDASNVMDR 143
IDLL QI D RL A A + R
Sbjct: 904 VIDLLEQIRLCVGTDTRLGGTARSAVKAIRR 934
>gi|260578709|ref|ZP_05846617.1| DEAD/DEAH box helicase [Corynebacterium jeikeium ATCC 43734]
gi|258603206|gb|EEW16475.1| DEAD/DEAH box helicase [Corynebacterium jeikeium ATCC 43734]
Length = 890
Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 62/146 (42%), Gaps = 9/146 (6%)
Query: 3 LRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVINVLDEHRSSFLE 62
LR I +L PA+LAAV ++ V E + K++ EP I+ + + S+
Sbjct: 742 LRRGIWDELDPAELAAVASTCVFENRRDSGAKDDGVPTEPLAEAISQTWRIYQELSTD-- 799
Query: 63 LQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMM-----DCALDDGDLARLLRRTIDLL 117
+++H + + + F+ V W +G + L GD R RR IDLL
Sbjct: 800 -EQRHRLTVTREPELGFATAVHQWTAGAPLEYCLRAAEASGATLTPGDFVRWCRRVIDLL 858
Query: 118 AQIPKLPDVDQRLQKNAVDASNVMDR 143
QI KL ++ + A M R
Sbjct: 859 DQI-KLTGYSNEVKAASRKAVAAMRR 883
>gi|68536017|ref|YP_250722.1| helicase [Corynebacterium jeikeium K411]
gi|68263616|emb|CAI37104.1| putative helicase [Corynebacterium jeikeium K411]
Length = 890
Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 62/146 (42%), Gaps = 9/146 (6%)
Query: 3 LRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVINVLDEHRSSFLE 62
LR I +L PA+LAAV ++ V E + K++ EP I+ + + S+
Sbjct: 742 LRRGIWDELDPAELAAVASTCVFENRRDSGAKDDGVPTEPLAEAISQTWRIYQELSTD-- 799
Query: 63 LQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMM-----DCALDDGDLARLLRRTIDLL 117
+++H + + + F+ V W +G + L GD R RR IDLL
Sbjct: 800 -EQRHRLTVTREPELGFATAVHQWTAGAPLEYCLRAAEASGATLTPGDFVRWCRRVIDLL 858
Query: 118 AQIPKLPDVDQRLQKNAVDASNVMDR 143
QI KL ++ + A M R
Sbjct: 859 DQI-KLTGYSNEVKAASRKAVAAMRR 883
>gi|359766906|ref|ZP_09270702.1| putative helicase [Gordonia polyisoprenivorans NBRC 16320]
gi|359315786|dbj|GAB23535.1| putative helicase [Gordonia polyisoprenivorans NBRC 16320]
Length = 950
Score = 37.4 bits (85), Expect = 2.0, Method: Composition-based stats.
Identities = 34/125 (27%), Positives = 53/125 (42%), Gaps = 11/125 (8%)
Query: 3 LRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPS--TTVINVINVLDEHRSSF 60
+R I L P LAAV A++V E + ++ P+ T + + + + S
Sbjct: 799 IRAGIWDKLSPPDLAAVVAAMVFESRRESYSGADAMSGNPALRTAIADTVGIW----RSV 854
Query: 61 LELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCA-----LDDGDLARLLRRTID 115
++ +H V D+ FS V W SG + E + L GD R R+ +D
Sbjct: 855 TAVESRHHVSPTREPDTGFSVAVSLWVSGRSLTEALAAAGERGHLLSPGDFVRWNRQVVD 914
Query: 116 LLAQI 120
LL QI
Sbjct: 915 LLEQI 919
>gi|72162166|ref|YP_289823.1| helicase, C-terminal:DEAD/DEAH box helicase, N-terminal, partial
[Thermobifida fusca YX]
gi|71915898|gb|AAZ55800.1| helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
[Thermobifida fusca YX]
Length = 947
Score = 37.4 bits (85), Expect = 2.1, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 50/120 (41%), Gaps = 4/120 (3%)
Query: 3 LRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVINVLDEHRSSFLE 62
LR + L P +LAA ++LV E + + + PS V +N + +
Sbjct: 802 LRRGVWDALGPEELAACVSALVYESRR----PDEVFARVPSGPVEEALNAMMRLWGELSD 857
Query: 63 LQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPK 122
++ +H V D F WA G ++ + + GD R ++ IDLL QI +
Sbjct: 858 IEHRHRVSFLREPDLGFVWPTYRWARGDQLDHILNEAGMPAGDFVRSTKQLIDLLGQIAQ 917
>gi|378717910|ref|YP_005282799.1| putative ATP-dependent RNA helicase [Gordonia polyisoprenivorans
VH2]
gi|375752613|gb|AFA73433.1| putative ATP-dependent RNA helicase [Gordonia polyisoprenivorans
VH2]
Length = 945
Score = 37.4 bits (85), Expect = 2.1, Method: Composition-based stats.
Identities = 34/125 (27%), Positives = 53/125 (42%), Gaps = 11/125 (8%)
Query: 3 LRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPS--TTVINVINVLDEHRSSF 60
+R I L P LAAV A++V E + ++ P+ T + + + + S
Sbjct: 794 IRAGIWDKLSPPDLAAVVAAMVFESRRESYSGADAMSGNPALRTAIADTVGIW----RSV 849
Query: 61 LELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCA-----LDDGDLARLLRRTID 115
++ +H V D+ FS V W SG + E + L GD R R+ +D
Sbjct: 850 TAVESRHHVSPTREPDTGFSVAVSLWVSGRSLTEALAAAGERGHLLSPGDFVRWNRQVVD 909
Query: 116 LLAQI 120
LL QI
Sbjct: 910 LLEQI 914
>gi|420154156|ref|ZP_14661079.1| DEAD/DEAH box helicase [Actinomyces massiliensis F0489]
gi|394755492|gb|EJF38710.1| DEAD/DEAH box helicase [Actinomyces massiliensis F0489]
Length = 982
Score = 37.4 bits (85), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 52/119 (43%), Gaps = 4/119 (3%)
Query: 3 LRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNN-SYIYEPSTTVINVINVLDEHRSSFL 61
LR+ + L PA LAA ++ V E RL + P + + V+ S
Sbjct: 826 LRHGLWQGLDPADLAAAVSACVYE---PRLATQSLGLPIAPGSRLGAVLREEIRLSRSIN 882
Query: 62 ELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQI 120
+L+ +E + +G V AWA G E++ C L GD R ++ +D+L Q+
Sbjct: 883 DLETLARIEFSSGAEPALAGAVRAWAEGADLAEVLEACELTAGDFVRCSKQLLDVLRQL 941
>gi|253742835|gb|EES99502.1| Helicase [Giardia intestinalis ATCC 50581]
Length = 1358
Score = 37.0 bits (84), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 62/121 (51%), Gaps = 12/121 (9%)
Query: 8 LLDLKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVINVLDEHRSSFLE--LQE 65
DL P LA V ASL+ EG K++ +P + ++ L + S+ L+ E
Sbjct: 1201 FTDLTPRVLAGVLASLLGEGTGAS--KSSQLQMDPKLS--QALSKLKQIVSNLLKDCAIE 1256
Query: 66 KHGVEIPCC-----LDSQFSGMVEAWASGLTWREMM-MDCALDDGDLARLLRRTIDLLAQ 119
+E+ C +D + + +WA+G T++E++ +D + +G + R+ RR I+L+ Q
Sbjct: 1257 DTTLELRCTTVDHIVDDTAAVIAFSWAAGQTFQEILDIDRSQFEGSIVRMFRRLINLVDQ 1316
Query: 120 I 120
+
Sbjct: 1317 L 1317
>gi|237785498|ref|YP_002906203.1| putative helicase [Corynebacterium kroppenstedtii DSM 44385]
gi|237758410|gb|ACR17660.1| putative helicase [Corynebacterium kroppenstedtii DSM 44385]
Length = 954
Score = 37.0 bits (84), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 63/146 (43%), Gaps = 10/146 (6%)
Query: 3 LRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVINVLDEHRSSFLE 62
LR KI DL PA+LA V ++ V E K + + +P T I L E +
Sbjct: 807 LRRKIWDDLDPAELAGVVSTCVFENRKS-VPGDVEVPTQPLATAIENTERLWE---EIVT 862
Query: 63 LQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCA-----LDDGDLARLLRRTIDLL 117
+E+H + + ++++ + + W +G + A L GD R R+ ID+L
Sbjct: 863 DEERHHLPMTRPIETELATAMHQWTAGAPLSYCVQAAAANGTSLTPGDFVRSCRQVIDVL 922
Query: 118 AQIPKLPDVDQRLQKNAVDASNVMDR 143
QI K ++ +A A M R
Sbjct: 923 NQI-KTAGYSNDIRAHARQAVEAMRR 947
>gi|390566130|ref|ZP_10246630.1| DEAD/DEAH box helicase domain protein [Nitrolancetus hollandicus
Lb]
gi|390170623|emb|CCF85974.1| DEAD/DEAH box helicase domain protein [Nitrolancetus hollandicus
Lb]
Length = 956
Score = 37.0 bits (84), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 36/160 (22%), Positives = 72/160 (45%), Gaps = 19/160 (11%)
Query: 6 KILLDLKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVINVLDEHRSSFLELQE 65
+IL +L PA+ A V + + R ++ + P+ +I++ + L + L +
Sbjct: 790 EILQNLSPAETAEVFSWFAYD----RDFRFANRYTLPNH-LIHLKHRLQDIEQQVLATER 844
Query: 66 KHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQI----- 120
++ + I + F G + AW G T +++ L +GDL +TIDL+ Q+
Sbjct: 845 RNNLFISTGHNDAFYGAMRAWCLGATMAQILDRMELSEGDLVLTFNKTIDLMRQVREMLA 904
Query: 121 ---PKLP------DVDQRLQKNAVDASNVMDRPPISELAG 151
P P ++ ++++ V+ S + P+ E AG
Sbjct: 905 HAMPNHPLREVLATAEELVRRDIVEQSLTIGFLPLGESAG 944
>gi|315655365|ref|ZP_07908265.1| helicase [Mobiluncus curtisii ATCC 51333]
gi|315490305|gb|EFU79930.1| helicase [Mobiluncus curtisii ATCC 51333]
Length = 816
Score = 37.0 bits (84), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 53/124 (42%), Gaps = 8/124 (6%)
Query: 3 LRNKILLDLKPAQLA---AVCASLVSEGIKVRLWKNNSYIYEPSTTVINVINVLDEHRSS 59
LR + DL A LA +VC + G RL E S + + +
Sbjct: 672 LRRGVFDDLNVADLAGALSVCLAQNRTGGLSRLIPA-----EASANLATALESMGRINFE 726
Query: 60 FLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQ 119
LQ++H +E L++ V AWA +T + + + GD R++R+ IDL Q
Sbjct: 727 IATLQQEHYLEAYPPLETDLLPGVVAWAQDVTLGQCLELTGMSAGDFVRVIRQVIDLADQ 786
Query: 120 IPKL 123
+ KL
Sbjct: 787 LRKL 790
>gi|315656721|ref|ZP_07909608.1| helicase [Mobiluncus curtisii subsp. holmesii ATCC 35242]
gi|315492676|gb|EFU82280.1| helicase [Mobiluncus curtisii subsp. holmesii ATCC 35242]
Length = 816
Score = 37.0 bits (84), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 53/124 (42%), Gaps = 8/124 (6%)
Query: 3 LRNKILLDLKPAQLA---AVCASLVSEGIKVRLWKNNSYIYEPSTTVINVINVLDEHRSS 59
LR + DL A LA +VC + G RL E S + + +
Sbjct: 672 LRRGVFDDLNVADLAGALSVCLAQNRTGGLSRLIPA-----EASANLATALESMGRINFE 726
Query: 60 FLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQ 119
LQ++H +E L++ V AWA +T + + + GD R++R+ IDL Q
Sbjct: 727 IATLQQEHYLEAYPPLETDLLPGVVAWAQDVTLGQCLELTGMSAGDFVRVIRQVIDLADQ 786
Query: 120 IPKL 123
+ KL
Sbjct: 787 LRKL 790
>gi|297560479|ref|YP_003679453.1| DEAD/DEAH box helicase [Nocardiopsis dassonvillei subsp.
dassonvillei DSM 43111]
gi|296844927|gb|ADH66947.1| DEAD/DEAH box helicase domain protein [Nocardiopsis dassonvillei
subsp. dassonvillei DSM 43111]
Length = 950
Score = 37.0 bits (84), Expect = 2.8, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 47/118 (39%), Gaps = 4/118 (3%)
Query: 3 LRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVINVLDEHRSSFLE 62
LR + L P +LAA ASLV E + +++Y P V + + E
Sbjct: 806 LRRGLWKGLTPVELAACAASLVYEARR----GDDAYPRLPGGRVDETLAEMVRLWGELSE 861
Query: 63 LQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQI 120
++ +H V D F WA G ++ + GD R + +D+L QI
Sbjct: 862 VESRHRVSFLRQPDLGFVWTAHRWAGGDRLDAILRQADMPAGDFVRTAKMLVDMLGQI 919
>gi|184201024|ref|YP_001855231.1| putative helicase [Kocuria rhizophila DC2201]
gi|183581254|dbj|BAG29725.1| putative helicase [Kocuria rhizophila DC2201]
Length = 941
Score = 37.0 bits (84), Expect = 2.8, Method: Composition-based stats.
Identities = 40/152 (26%), Positives = 64/152 (42%), Gaps = 21/152 (13%)
Query: 1 MVLRNKILLDLKPAQLAAVCASLV------SEGIKVRLWKNNSYIYEPSTTVINVINVLD 54
+ LR+ L L LA V +LV +G + RL P+ + + L
Sbjct: 792 LSLRDGFLDGLDAPGLAGVMTALVYQPRREDQGTRPRL---------PTAAMDAAVQTLL 842
Query: 55 EHRSSFLELQEKHGVEIPCCLDSQFSGMVEA---WASGLTWREMMMDCALDDGDLARLLR 111
E+ S + +H +P + G+VEA WA G T + L GD R +
Sbjct: 843 ENWSVLSAREAEH--RLPLTAVPEL-GLVEAMHRWARGATLTRTLTGTDLAAGDFVRWAK 899
Query: 112 RTIDLLAQIPKLPDVDQRLQKNAVDASNVMDR 143
+TID+L Q+ + +D L+ A +A + R
Sbjct: 900 QTIDVLDQLRGVHGLDPALRDTAHEAIEAVRR 931
>gi|404256704|ref|ZP_10960036.1| putative helicase [Gordonia namibiensis NBRC 108229]
gi|403404779|dbj|GAB98445.1| putative helicase [Gordonia namibiensis NBRC 108229]
Length = 942
Score = 37.0 bits (84), Expect = 2.9, Method: Composition-based stats.
Identities = 28/91 (30%), Positives = 38/91 (41%), Gaps = 5/91 (5%)
Query: 58 SSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCA-----LDDGDLARLLRR 112
S ++ +H V D+ FS V WASG + E ++ L GD R R+
Sbjct: 844 SKVTAVESRHRVSPTREPDTGFSLAVATWASGRSLSEALLLAGERGQLLSPGDFVRWNRQ 903
Query: 113 TIDLLAQIPKLPDVDQRLQKNAVDASNVMDR 143
IDLL Q+ D RL A A + R
Sbjct: 904 VIDLLEQVRLCVGTDTRLGGTARSAVKAIRR 934
>gi|163840768|ref|YP_001625173.1| ATP-dependent DNA helicase [Renibacterium salmoninarum ATCC 33209]
gi|162954244|gb|ABY23759.1| ATP-dependent DNA helicase [Renibacterium salmoninarum ATCC 33209]
Length = 954
Score = 37.0 bits (84), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 68/146 (46%), Gaps = 21/146 (14%)
Query: 1 MVLRNKILLDLKPAQLAAVCASLVSE------GIKVRLWKNNSYIYEPSTTVINVINVLD 54
+ +R L DL +LAA ++LV + G++ R+ PS ++ I+++
Sbjct: 806 LCIREGALADLDAVELAAFASALVYQAKREERGLRPRM---------PSPSIDAAIDIVV 856
Query: 55 EHRSSFLELQEKHGVEIPCCLDSQFSGMV---EAWASGLTWREMMMDCALDDGDLARLLR 111
+ S+ LE QE ++P + + G+V WA G ++ L GD R +
Sbjct: 857 QQWSA-LEDQESQS-KLPLTSEPEL-GLVWPMFKWARGRHLEAVLEGTDLAAGDFFRWTK 913
Query: 112 RTIDLLAQIPKLPDVDQRLQKNAVDA 137
+ IDLL Q+ +P + ++ N V A
Sbjct: 914 QVIDLLDQLASVPGLPIEIRSNCVAA 939
>gi|308271615|emb|CBX28223.1| hypothetical protein N47_G35470 [uncultured Desulfobacterium sp.]
Length = 619
Score = 36.6 bits (83), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 67/145 (46%), Gaps = 7/145 (4%)
Query: 3 LRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVINVLDEHRSSFLE 62
R KI PA LAA+ AS V+E + + P+ ++ V + F +
Sbjct: 459 FRLKIFPQKDPALLAAIIASFVNEK---EMEDKIDRSFTPAKLLLAFAQV-KKGLLPFAK 514
Query: 63 LQEKHGVEI-PCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIP 121
L G EI P L + + AWA+G TW ++++ +D+G+LA L+ RT D L I
Sbjct: 515 LMFDSGFEIRPLYL--RACAAIYAWAAGETWEKVVLISEMDEGNLAMLILRTADNLRHIR 572
Query: 122 KLPDVDQRLQKNAVDASNVMDRPPI 146
L A +A +++ + P+
Sbjct: 573 SLSTAFPEASHTAAEAIDLILKDPV 597
>gi|409392272|ref|ZP_11243853.1| putative helicase [Gordonia rubripertincta NBRC 101908]
gi|403197872|dbj|GAB87087.1| putative helicase [Gordonia rubripertincta NBRC 101908]
Length = 942
Score = 36.6 bits (83), Expect = 3.4, Method: Composition-based stats.
Identities = 25/73 (34%), Positives = 32/73 (43%), Gaps = 5/73 (6%)
Query: 76 DSQFSGMVEAWASGLTWREMMMDCA-----LDDGDLARLLRRTIDLLAQIPKLPDVDQRL 130
D+ FS V WASG + E ++ L GD R R+ IDLL Q+ D RL
Sbjct: 862 DTGFSLAVATWASGRSLSEALLLAGERGQLLSPGDFVRWNRQVIDLLEQVRLCVGTDTRL 921
Query: 131 QKNAVDASNVMDR 143
A A + R
Sbjct: 922 GGTARSAVKAIRR 934
>gi|300741521|ref|ZP_07071542.1| putative ATP-dependent RNA helicase [Rothia dentocariosa M567]
gi|300380706|gb|EFJ77268.1| putative ATP-dependent RNA helicase [Rothia dentocariosa M567]
Length = 973
Score = 36.6 bits (83), Expect = 3.6, Method: Composition-based stats.
Identities = 37/144 (25%), Positives = 63/144 (43%), Gaps = 5/144 (3%)
Query: 1 MVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVINVLDEHRSSF 60
+ L L DL PA +AA A+L +G K + Y P ++ I ++ +
Sbjct: 827 ICLEKGFLTDLDPAAIAATIAALTYQGKKETIEILPRY---PHPSLQAPIATINRELARL 883
Query: 61 LELQEKHGV-EIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQ 119
+E+H + + P C D + WA G+ + + D L GD R ++ ID L Q
Sbjct: 884 NAHEERHKLDQTPPC-DLGLVTPIYRWARGMHLAKALEDTDLAAGDFVRWAKQVIDALDQ 942
Query: 120 IPKLPDVDQRLQKNAVDASNVMDR 143
I +P + L+ + A ++ R
Sbjct: 943 IAHIPTISPNLRASCEKAIALIRR 966
>gi|381152140|ref|ZP_09864009.1| cation/multidrug efflux pump [Methylomicrobium album BG8]
gi|380884112|gb|EIC29989.1| cation/multidrug efflux pump [Methylomicrobium album BG8]
Length = 1037
Score = 36.2 bits (82), Expect = 4.1, Method: Composition-based stats.
Identities = 19/51 (37%), Positives = 29/51 (56%)
Query: 100 ALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNAVDASNVMDRPPISELA 150
A+D G+L+R R +D L ++P+L DV LQ+ + A +DR S L
Sbjct: 679 AVDFGELSRWSARLVDALRRLPQLSDVASDLQEQGLQAYVSIDRATASRLG 729
>gi|227496136|ref|ZP_03926442.1| DEAD/DEAH box helicase domain protein [Actinomyces urogenitalis DSM
15434]
gi|226834370|gb|EEH66753.1| DEAD/DEAH box helicase domain protein [Actinomyces urogenitalis DSM
15434]
Length = 959
Score = 36.2 bits (82), Expect = 4.2, Method: Composition-based stats.
Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 10/85 (11%)
Query: 69 VEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKL-PDV- 126
+E+ + + V+AWA G + +++ D + GD R R+ +D+L Q+ L PD
Sbjct: 867 LELSAGAEPAMAAGVQAWAEGASLAQVLEDSEMTAGDFVRWSRQLLDVLGQLATLQPDSR 926
Query: 127 -DQRL-------QKNAVDASNVMDR 143
DQ L + A +AS +DR
Sbjct: 927 EDQALGSQVAEVSRTAAEASLDVDR 951
>gi|284032976|ref|YP_003382907.1| DSH domain-containing protein [Kribbella flavida DSM 17836]
gi|283812269|gb|ADB34108.1| DSH domain protein [Kribbella flavida DSM 17836]
Length = 957
Score = 36.2 bits (82), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 61/152 (40%), Gaps = 13/152 (8%)
Query: 3 LRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVINVLDEHRSSFLE 62
LR + DL QLAA A+LV E R + P V + + +
Sbjct: 809 LRQGVFDDLDVPQLAACLAALVYES---RSKDEPTSPRLPQGDVRHALERMGSIWRDLSA 865
Query: 63 LQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPK 122
L+ V+ +D F WASG + E++ + L GD R +++ IDL Q+
Sbjct: 866 LERNMRVDFLRSMDLGFCWAAFRWASGASLSEVLYESDLAAGDFVRWVKQLIDLTEQVAD 925
Query: 123 LPD----------VDQRLQKNAVDASNVMDRP 144
V + +++ + ++V+D P
Sbjct: 926 AAGPTPLRATARAVTEEIRRGVISYASVVDEP 957
>gi|227549294|ref|ZP_03979343.1| helicase [Corynebacterium lipophiloflavum DSM 44291]
gi|227078613|gb|EEI16576.1| helicase [Corynebacterium lipophiloflavum DSM 44291]
Length = 922
Score = 36.2 bits (82), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 56/135 (41%), Gaps = 13/135 (9%)
Query: 11 LKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVINVLDEHRSSFLELQEKHGVE 70
L PA+LA V + V E K + P+ + +N + + +++H +
Sbjct: 783 LDPAELAGVASMCVFENRKATMGSAEV----PTENMAAAMNSTMRIYNELVADEQRHQLP 838
Query: 71 IPCCLDSQFSGMVEAWASGLTWREMMMDCA-----LDDGDLARLLRRTIDLLAQIPKL-- 123
+ D+ FS V W +G + A L GD R R+ IDLL Q+ K
Sbjct: 839 VSRMPDASFSLSVHQWTAGAPLGYCLAAAAESGAELTPGDFVRWCRQAIDLLEQVAKTGY 898
Query: 124 -PDVDQRLQKNAVDA 137
P++ K A+DA
Sbjct: 899 NPEIRHAANK-AIDA 912
>gi|221632204|ref|YP_002521425.1| putative DNA helicase [Thermomicrobium roseum DSM 5159]
gi|221156835|gb|ACM05962.1| putative DNA helicase [Thermomicrobium roseum DSM 5159]
Length = 948
Score = 36.2 bits (82), Expect = 5.0, Method: Composition-based stats.
Identities = 17/71 (23%), Positives = 35/71 (49%)
Query: 53 LDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRR 112
L+ E++ ++G+ + F G + AW +G T E+ L +GDL +
Sbjct: 838 LESLEQEVFEVERRNGLALSTGHHEGFYGAMRAWCNGATMAEITELIELSEGDLVLTFNK 897
Query: 113 TIDLLAQIPKL 123
++DL+ Q+ ++
Sbjct: 898 SLDLMRQVREM 908
>gi|409358499|ref|ZP_11236862.1| ATP-dependent helicase [Dietzia alimentaria 72]
Length = 886
Score = 35.8 bits (81), Expect = 5.4, Method: Composition-based stats.
Identities = 40/146 (27%), Positives = 66/146 (45%), Gaps = 25/146 (17%)
Query: 3 LRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVINVLDEHR---SS 59
LR + L PA LAAV A++V+ ++ S + PS + LDE +
Sbjct: 740 LRRGVWRGLDPAGLAAVIATVVAHP------RSESAVRAPSDETLRA--ALDETERVATD 791
Query: 60 FLELQEKHGVEIPCCLDSQFSGMVEAWASG--------LTWREMMMDCALDDGDLARLLR 111
+++ H + LD + ++ W SG +W+E + L GD R R
Sbjct: 792 VAGVEQAHRLPSTPDLDPGLAPVLHHWVSGGALASILAASWQEGV---ELTAGDFVRSAR 848
Query: 112 RTIDLLAQIPKL--PDVDQRLQKNAV 135
+DLLAQ+ ++ P+V R ++AV
Sbjct: 849 LVMDLLAQVAQVAEPEV-ARTARSAV 873
>gi|389864289|ref|YP_006366529.1| helicase helY [Modestobacter marinus]
gi|388486492|emb|CCH88044.1| putative helicase helY [Modestobacter marinus]
Length = 950
Score = 35.8 bits (81), Expect = 5.7, Method: Composition-based stats.
Identities = 37/131 (28%), Positives = 53/131 (40%), Gaps = 15/131 (11%)
Query: 3 LRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVINVLDEHRSSFLE 62
+R + L A+LAA ++LV E + PS V L E R L+
Sbjct: 802 IRAGVFRGLNAAELAACVSALVFEARR-------EGPGTPSVPAGKVSAALAEMRRVQLQ 854
Query: 63 L---QEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCA-----LDDGDLARLLRRTI 114
L + +H V + LD F WA G T ++ L GD R R+ +
Sbjct: 855 LADVEREHEVPVTRELDLGFVWAAYRWADGQTLDRVLAGAEQAGTELSGGDFVRWARQLV 914
Query: 115 DLLAQIPKLPD 125
DLL Q+ K+ D
Sbjct: 915 DLLDQLAKVAD 925
>gi|412990612|emb|CCO17984.1| ATP-dependent RNA helicase DOB1 [Bathycoccus prasinos]
Length = 1127
Score = 35.8 bits (81), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 58/122 (47%), Gaps = 10/122 (8%)
Query: 5 NKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVINVLDEHR-SSFLEL 63
N P +L A+C+ V K+N P + + VLD + + +L
Sbjct: 979 NGAFAKATPRELVALCSMFVP------TEKSNQKPTIPKNLEVPIKGVLDAAKLIANTQL 1032
Query: 64 QEKHGVEIPCCLDSQFSGMVEA---WASGLTWREMMMDCALDDGDLARLLRRTIDLLAQI 120
++K +++ +DS + +VE WA G T+ E+++ L +G + R +RR +L+ ++
Sbjct: 1033 EQKLEIDVEKYVDSFRTFLVEIVHDWAGGKTFSEVLLRTDLFEGTIVRAMRRLDELMLEL 1092
Query: 121 PK 122
+
Sbjct: 1093 GR 1094
>gi|408676942|ref|YP_006876769.1| putative helicase [Streptomyces venezuelae ATCC 10712]
gi|328881271|emb|CCA54510.1| putative helicase [Streptomyces venezuelae ATCC 10712]
Length = 942
Score = 35.4 bits (80), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 65/149 (43%), Gaps = 13/149 (8%)
Query: 3 LRNKILLDLKPAQLAAVCASLVSEG------IKVRLWKNNSYIYEPSTTVINVINVLDEH 56
LR+++ L PA+LAA ++LV E + +L N+ ++ + LD
Sbjct: 790 LRDRVWEGLNPAELAACASALVFEARQSDDAVAPKLPTGNAKA--ALGEMVRIWGRLDAL 847
Query: 57 RSSF-LELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTID 115
F + E G P D F+ WAS + E++ + + GD R ++ ID
Sbjct: 848 EEEFKINQAEGVGQREP---DLGFAWAAYQWASDKSLDEVLREAEMPAGDFVRWCKQVID 904
Query: 116 LLAQI-PKLPDVDQRLQKNAVDASNVMDR 143
+L QI P + + KNA A + + R
Sbjct: 905 VLGQIAAAAPRENSTVAKNARKAVDSLLR 933
>gi|422295926|gb|EKU23225.1| antiviral helicase SKI2, partial [Nannochloropsis gaditana CCMP526]
Length = 735
Score = 35.4 bits (80), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 26/40 (65%)
Query: 81 GMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQI 120
G+V AWASG+++RE+M + +G + R + R +L ++
Sbjct: 660 GVVYAWASGVSFREIMATTEIQEGSIVRCITRLDELCREV 699
>gi|152965851|ref|YP_001361635.1| DEAD/DEAH box helicase [Kineococcus radiotolerans SRS30216]
gi|151360368|gb|ABS03371.1| DEAD/DEAH box helicase domain protein [Kineococcus radiotolerans
SRS30216]
Length = 931
Score = 35.4 bits (80), Expect = 8.3, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 49/120 (40%), Gaps = 8/120 (6%)
Query: 3 LRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVINVLDEHR--SSF 60
LR+ L PA LAA ++LV E + + + + HR S
Sbjct: 787 LRHGAWSGLSPADLAAAVSTLVHESRRDEGGRPDRIPRRAEAAIATT------HRLWSDL 840
Query: 61 LELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQI 120
+ ++ H V D + V WASG E++ + L GD R ++ +DLL Q+
Sbjct: 841 TDREDHHKVPATREPDPGLAWAVHRWASGHRLDEVLREADLAAGDFVRRCKQLVDLLDQV 900
>gi|256825235|ref|YP_003149195.1| superfamily II RNA helicase [Kytococcus sedentarius DSM 20547]
gi|256688628|gb|ACV06430.1| superfamily II RNA helicase [Kytococcus sedentarius DSM 20547]
Length = 953
Score = 35.0 bits (79), Expect = 9.8, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 24/45 (53%)
Query: 76 DSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQI 120
D+ + M+ WASG ++ D L GD R ++ +DLL Q+
Sbjct: 878 DAGMAWMMHKWASGARLEMVLRDSELSAGDFVRRAKQVVDLLGQV 922
>gi|451944190|ref|YP_007464826.1| helicase [Corynebacterium halotolerans YIM 70093 = DSM 44683]
gi|451903577|gb|AGF72464.1| helicase [Corynebacterium halotolerans YIM 70093 = DSM 44683]
Length = 925
Score = 35.0 bits (79), Expect = 9.9, Method: Composition-based stats.
Identities = 38/145 (26%), Positives = 60/145 (41%), Gaps = 17/145 (11%)
Query: 3 LRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVINVLDEHRSSFLE 62
L+ I +L PA+LA V + E K EP + ++ + E
Sbjct: 778 LKRGIWNELDPAELAGVVSMCTFENRKATHG-------EPDAATDRMAEAMNATARIWSE 830
Query: 63 L---QEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCA-----LDDGDLARLLRRTI 114
L +++H + + ++ F+ V WA+G M A L GD R R+ I
Sbjct: 831 LSADEQRHRLPVTREPEAGFALAVHQWAAGAPLGYCMAAAAESGAELTPGDFVRWCRQVI 890
Query: 115 DLLAQIPK--LPDVDQRLQKNAVDA 137
DLL Q+ K D +R + A+DA
Sbjct: 891 DLLEQVGKTGYEDGIRRSARQAIDA 915
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.320 0.135 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,280,764,601
Number of Sequences: 23463169
Number of extensions: 85851984
Number of successful extensions: 220082
Number of sequences better than 100.0: 374
Number of HSP's better than 100.0 without gapping: 218
Number of HSP's successfully gapped in prelim test: 156
Number of HSP's that attempted gapping in prelim test: 219709
Number of HSP's gapped (non-prelim): 382
length of query: 151
length of database: 8,064,228,071
effective HSP length: 114
effective length of query: 37
effective length of database: 9,684,394,101
effective search space: 358322581737
effective search space used: 358322581737
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 71 (32.0 bits)