BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 043012
         (151 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1KW2|A Chain A, Crystal Structure Of Uncomplexed Vitamin D-Binding Protein
 pdb|1KW2|B Chain B, Crystal Structure Of Uncomplexed Vitamin D-Binding Protein
 pdb|1KXP|D Chain D, Crystal Structure Of Human Vitamin D-binding Protein In
           Complex With Skeletal Actin
          Length = 458

 Score = 27.3 bits (59), Expect = 3.4,   Method: Composition-based stats.
 Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 2/28 (7%)

Query: 118 AQIPKLPDVDQRLQKNAVDASN--VMDR 143
           AQ+P+LPDV+    K+  D  N  VMD+
Sbjct: 302 AQLPELPDVELPTNKDVCDPGNTKVMDK 329


>pdb|1MA9|A Chain A, Crystal Structure Of The Complex Of Human Vitamin D
           Binding Protein And Rabbit Muscle Actin
          Length = 458

 Score = 27.3 bits (59), Expect = 3.4,   Method: Composition-based stats.
 Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 2/28 (7%)

Query: 118 AQIPKLPDVDQRLQKNAVDASN--VMDR 143
           AQ+P+LPDV+    K+  D  N  VMD+
Sbjct: 302 AQLPELPDVELPTNKDVCDPGNTKVMDK 329


>pdb|1J78|A Chain A, Crystallographic Analysis Of The Human Vitamin D Binding
           Protein
 pdb|1J78|B Chain B, Crystallographic Analysis Of The Human Vitamin D Binding
           Protein
 pdb|1J7E|A Chain A, A Structural Basis For The Unique Binding Features Of The
           Human Vitamin D-Binding Protein
 pdb|1J7E|B Chain B, A Structural Basis For The Unique Binding Features Of The
           Human Vitamin D-Binding Protein
 pdb|1LOT|A Chain A, Crystal Structure Of The Complex Of Actin With Vitamin
           D-Binding Protein
          Length = 458

 Score = 27.3 bits (59), Expect = 3.4,   Method: Composition-based stats.
 Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 2/28 (7%)

Query: 118 AQIPKLPDVDQRLQKNAVDASN--VMDR 143
           AQ+P+LPDV+    K+  D  N  VMD+
Sbjct: 302 AQLPELPDVELPTNKDVCDPGNTKVMDK 329


>pdb|2CX5|A Chain A, Crystal Structure Of A Putative Trans-Editing Enzyme For
           Prolyl Trna Synthetase
 pdb|2CX5|B Chain B, Crystal Structure Of A Putative Trans-Editing Enzyme For
           Prolyl Trna Synthetase
 pdb|2CX5|C Chain C, Crystal Structure Of A Putative Trans-Editing Enzyme For
           Prolyl Trna Synthetase
 pdb|2CX5|D Chain D, Crystal Structure Of A Putative Trans-Editing Enzyme For
           Prolyl Trna Synthetase
 pdb|2Z0K|A Chain A, Crystal Structure Of Prox-Alasa Complex From T.
           Thermophilus
 pdb|2Z0X|A Chain A, Crystal Structure Of Prox-cyssa Complex From T.
           Thermophilus
          Length = 158

 Score = 26.9 bits (58), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 11/30 (36%), Positives = 14/30 (46%)

Query: 67  HGVEIPCCLDSQFSGMVEAWASGLTWREMM 96
           H   +P  LD    G  E WA+G T R + 
Sbjct: 108 HNTPLPAYLDEDLLGYPEVWAAGGTPRALF 137


>pdb|3RIJ|A Chain A, Epitope Backbone Grafting By Computational Design For
           Improved Presentation Of Linear Epitopes On Scaffold
           Proteins
 pdb|3RIJ|B Chain B, Epitope Backbone Grafting By Computational Design For
           Improved Presentation Of Linear Epitopes On Scaffold
           Proteins
 pdb|3RIJ|C Chain C, Epitope Backbone Grafting By Computational Design For
           Improved Presentation Of Linear Epitopes On Scaffold
           Proteins
 pdb|3RIJ|D Chain D, Epitope Backbone Grafting By Computational Design For
           Improved Presentation Of Linear Epitopes On Scaffold
           Proteins
          Length = 165

 Score = 26.6 bits (57), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 11/30 (36%), Positives = 14/30 (46%)

Query: 67  HGVEIPCCLDSQFSGMVEAWASGLTWREMM 96
           H   +P  LD    G  E WA+G T R + 
Sbjct: 107 HNTPLPAYLDEDLLGYPEVWAAGGTPRALF 136


>pdb|3RI0|A Chain A, Epitope Backbone Grafting By Computational Design For
           Improved Presentation Of Linear Epitopes On Scaffold
           Proteins
 pdb|3RI0|B Chain B, Epitope Backbone Grafting By Computational Design For
           Improved Presentation Of Linear Epitopes On Scaffold
           Proteins
          Length = 165

 Score = 26.6 bits (57), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 11/30 (36%), Positives = 14/30 (46%)

Query: 67  HGVEIPCCLDSQFSGMVEAWASGLTWREMM 96
           H   +P  LD    G  E WA+G T R + 
Sbjct: 107 HNTPLPAYLDEDLLGYPEVWAAGGTPRALF 136


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.133    0.394 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,793,203
Number of Sequences: 62578
Number of extensions: 119659
Number of successful extensions: 255
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 252
Number of HSP's gapped (non-prelim): 6
length of query: 151
length of database: 14,973,337
effective HSP length: 90
effective length of query: 61
effective length of database: 9,341,317
effective search space: 569820337
effective search space used: 569820337
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)