BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043012
(151 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|B9DFG3|ISE2_ARATH DEAD-box ATP-dependent RNA helicase ISE2, chloroplastic
OS=Arabidopsis thaliana GN=ISE2 PE=1 SV=2
Length = 1171
Score = 248 bits (632), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 113/151 (74%), Positives = 136/151 (90%)
Query: 1 MVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVINVLDEHRSSF 60
MVLRNK L+DLKP QLA VCASLVSEGIKVR W++N+YIYEPS TV++++N L++ RSS
Sbjct: 1021 MVLRNKALVDLKPPQLAGVCASLVSEGIKVRPWRDNNYIYEPSDTVVDMVNFLEDQRSSL 1080
Query: 61 LELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQI 120
++LQEKH V IPCCLD QFSGMVEAWASGL+W+EMMM+CA+D+GDLARLLRRTIDLLAQI
Sbjct: 1081 IKLQEKHEVMIPCCLDVQFSGMVEAWASGLSWKEMMMECAMDEGDLARLLRRTIDLLAQI 1140
Query: 121 PKLPDVDQRLQKNAVDASNVMDRPPISELAG 151
PKLPD+D LQ++A A+++MDRPPISELAG
Sbjct: 1141 PKLPDIDPVLQRSAAAAADIMDRPPISELAG 1171
>sp|Q6RI63|F120B_MOUSE Constitutive coactivator of peroxisome proliferator-activated
receptor gamma OS=Mus musculus GN=Fam120b PE=1 SV=1
Length = 786
Score = 32.7 bits (73), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Query: 45 TVINVINVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDD 103
T++N+ + + HR+ + V+ CCL ++ E+W G WRE CAL +
Sbjct: 19 TIVNIHELAERHRNKYPGCTPTIVVDAMCCLRYWYTA--ESWVCGGQWREYY--CALRN 73
>sp|Q96EK7|F120B_HUMAN Constitutive coactivator of peroxisome proliferator-activated
receptor gamma OS=Homo sapiens GN=FAM120B PE=1 SV=1
Length = 910
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Query: 45 TVINVINVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMM 96
TV+N + + HRS + V+ CCL ++ E+W G WRE
Sbjct: 19 TVVNFKELAEHHRSKYPGCTPTIVVDAMCCLRYWYT--PESWICGGQWREYF 68
>sp|Q54G57|HELC1_DICDI Activating signal cointegrator 1 complex subunit 3 OS=Dictyostelium
discoideum GN=ascc3 PE=3 SV=1
Length = 2195
Score = 30.4 bits (67), Expect = 3.6, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 7/60 (11%)
Query: 10 DLKPAQLAAVCASLVS------EGIKVRLWKNNSYIYEPSTTVINVINVLDEHRSSFLEL 63
D P +A A +V+ +GI R WKN SY+ S +I+ I+++ E R LE+
Sbjct: 1410 DYTPNMIALQNADIVTTTPEKWDGIS-RNWKNRSYVTSVSLLIIDEIHLIGELRGPILEV 1468
>sp|Q9PDF6|PUR4_XYLFA Phosphoribosylformylglycinamidine synthase OS=Xylella fastidiosa
(strain 9a5c) GN=purL PE=3 SV=1
Length = 1322
Score = 30.4 bits (67), Expect = 4.6, Method: Composition-based stats.
Identities = 10/21 (47%), Positives = 17/21 (80%)
Query: 49 VINVLDEHRSSFLELQEKHGV 69
++ V DEHR++F +L E+HG+
Sbjct: 959 IVQVADEHRTAFTDLVEQHGL 979
>sp|C5D679|ASSY_GEOSW Argininosuccinate synthase OS=Geobacillus sp. (strain WCH70)
GN=argG PE=3 SV=1
Length = 402
Score = 30.4 bits (67), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 36/90 (40%), Gaps = 7/90 (7%)
Query: 42 PSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCAL 101
P+ VI + R +E +KHG+ IP LDS FS W +C +
Sbjct: 136 PNLEVIAPVREWSWSREEEIEYAKKHGIPIPVDLDSPFSIDQNLWGRS-------NECGI 188
Query: 102 DDGDLARLLRRTIDLLAQIPKLPDVDQRLQ 131
+ A +L A + PDV + ++
Sbjct: 189 LEDPWAAPPEEAYELTAALENTPDVPEIIE 218
>sp|A4IRS3|ASSY_GEOTN Argininosuccinate synthase OS=Geobacillus thermodenitrificans
(strain NG80-2) GN=argG PE=3 SV=1
Length = 406
Score = 29.3 bits (64), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 32/85 (37%), Gaps = 7/85 (8%)
Query: 42 PSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCAL 101
P VI + R +E +KHG+ IP LDS FS W +C +
Sbjct: 136 PDLDVIAPVREWSWSREEEIEYAKKHGIPIPVDLDSPFSIDQNLWGRS-------NECGI 188
Query: 102 DDGDLARLLRRTIDLLAQIPKLPDV 126
+ A +L A + PDV
Sbjct: 189 LEDPWAAPPEEAYELTASLENAPDV 213
>sp|Q5KW94|ASSY_GEOKA Argininosuccinate synthase OS=Geobacillus kaustophilus (strain
HTA426) GN=argG PE=3 SV=1
Length = 406
Score = 29.3 bits (64), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 32/85 (37%), Gaps = 7/85 (8%)
Query: 42 PSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCAL 101
P VI + R +E +KHG+ IP LDS FS W +C +
Sbjct: 136 PDLDVIAPVREWSWSREEEIEYAKKHGIPIPVDLDSPFSIDQNLWGRS-------NECGI 188
Query: 102 DDGDLARLLRRTIDLLAQIPKLPDV 126
+ A +L A + PDV
Sbjct: 189 LEDPWAAPPEEAYELTASLENAPDV 213
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.135 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,996,091
Number of Sequences: 539616
Number of extensions: 2037959
Number of successful extensions: 5904
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 5893
Number of HSP's gapped (non-prelim): 14
length of query: 151
length of database: 191,569,459
effective HSP length: 107
effective length of query: 44
effective length of database: 133,830,547
effective search space: 5888544068
effective search space used: 5888544068
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)