Query 043012
Match_columns 151
No_of_seqs 128 out of 612
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 20:57:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043012.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043012hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a4z_A Antiviral helicase SKI2 100.0 1.5E-41 5.3E-46 311.2 11.9 143 2-149 842-993 (997)
2 2xgj_A ATP-dependent RNA helic 100.0 2.7E-41 9.1E-46 309.9 13.0 141 2-149 859-1006(1010)
3 3l9o_A ATP-dependent RNA helic 100.0 3.8E-41 1.3E-45 311.2 3.9 141 2-149 957-1104(1108)
4 4dyq_A Gene 1 protein; GP1, oc 92.4 0.15 5E-06 36.1 4.1 53 72-124 10-64 (140)
5 3idw_A Actin cytoskeleton-regu 88.7 0.4 1.4E-05 30.5 3.2 26 94-119 42-67 (72)
6 1tc3_C Protein (TC3 transposas 86.2 1.5 5E-05 23.8 4.5 34 80-113 12-45 (51)
7 2elh_A CG11849-PA, LD40883P; s 84.6 3.7 0.00013 26.0 6.4 51 74-124 22-73 (87)
8 1fse_A GERE; helix-turn-helix 80.8 6.6 0.00023 23.3 6.2 47 73-119 10-56 (74)
9 2va8_A SSO2462, SKI2-type heli 80.6 1.4 4.7E-05 38.4 3.9 71 78-148 583-655 (715)
10 2o8x_A Probable RNA polymerase 80.5 6.3 0.00021 23.1 6.0 48 74-121 15-63 (70)
11 3g3z_A NMB1585, transcriptiona 78.1 9.4 0.00032 25.6 7.0 54 58-115 18-71 (145)
12 4b8x_A SCO5413, possible MARR- 75.7 4.1 0.00014 28.1 4.6 55 58-115 22-77 (147)
13 3hug_A RNA polymerase sigma fa 75.5 9.1 0.00031 24.2 6.0 46 75-120 38-84 (92)
14 2jpc_A SSRB; DNA binding prote 73.9 7.4 0.00025 22.3 4.8 39 81-119 5-43 (61)
15 2hr3_A Probable transcriptiona 72.7 17 0.00058 24.2 7.2 29 87-115 48-76 (147)
16 3bdd_A Regulatory protein MARR 72.5 17 0.00059 23.9 7.1 59 53-115 12-71 (142)
17 1je8_A Nitrate/nitrite respons 72.4 8.2 0.00028 24.1 5.0 46 74-119 21-66 (82)
18 1p4x_A Staphylococcal accessor 72.2 20 0.0007 27.3 8.2 66 46-116 133-201 (250)
19 2gxg_A 146AA long hypothetical 72.0 17 0.00057 24.1 7.0 52 60-116 26-77 (146)
20 1jko_C HIN recombinase, DNA-in 71.9 3.1 0.00011 22.8 2.6 34 79-112 11-44 (52)
21 3mzy_A RNA polymerase sigma-H 70.8 11 0.00038 25.4 5.9 44 77-120 112-155 (164)
22 1sfx_A Conserved hypothetical 70.6 13 0.00043 23.3 5.8 54 59-116 8-61 (109)
23 2p7v_B Sigma-70, RNA polymeras 70.0 12 0.00041 22.1 5.2 46 75-120 6-56 (68)
24 3deu_A Transcriptional regulat 69.4 7.7 0.00026 27.1 4.9 70 43-115 24-94 (166)
25 1p4w_A RCSB; solution structur 69.4 12 0.00042 24.4 5.6 47 72-118 32-78 (99)
26 3shg_B VBHA; ampylation, adeny 69.2 3.3 0.00011 25.3 2.4 24 74-97 27-51 (61)
27 2fbh_A Transcriptional regulat 69.0 22 0.00075 23.5 7.1 66 46-115 11-78 (146)
28 3bro_A Transcriptional regulat 68.9 16 0.00055 24.1 6.3 52 60-116 23-77 (141)
29 2frh_A SARA, staphylococcal ac 68.5 9.9 0.00034 25.4 5.1 57 54-115 20-79 (127)
30 2a61_A Transcriptional regulat 67.9 19 0.00066 23.8 6.6 51 62-116 24-74 (145)
31 3c57_A Two component transcrip 67.3 16 0.00055 23.3 5.8 48 74-121 27-74 (95)
32 1x3u_A Transcriptional regulat 66.9 12 0.00041 22.5 4.9 43 77-119 19-61 (79)
33 3f3x_A Transcriptional regulat 65.8 26 0.0009 23.2 7.0 52 60-116 25-77 (144)
34 3eco_A MEPR; mutlidrug efflux 65.4 9.9 0.00034 25.2 4.6 53 60-115 20-73 (139)
35 1ku3_A Sigma factor SIGA; heli 65.2 19 0.00066 21.5 6.2 47 75-121 11-63 (73)
36 3ech_A MEXR, multidrug resista 62.9 30 0.001 22.9 7.7 55 56-115 20-77 (142)
37 2rdp_A Putative transcriptiona 62.6 31 0.0011 22.9 7.2 30 87-116 54-83 (150)
38 3jw4_A Transcriptional regulat 62.4 17 0.0006 24.3 5.5 68 45-115 14-83 (148)
39 3u2r_A Regulatory protein MARR 62.4 21 0.00073 24.5 6.1 69 44-115 18-88 (168)
40 1ku9_A Hypothetical protein MJ 61.8 15 0.00051 24.3 5.0 53 60-115 15-67 (152)
41 1xsv_A Hypothetical UPF0122 pr 61.4 28 0.00094 23.1 6.2 47 75-121 26-73 (113)
42 3oop_A LIN2960 protein; protei 61.2 9.6 0.00033 25.5 3.9 37 78-115 41-77 (143)
43 2rnj_A Response regulator prot 61.1 13 0.00043 23.4 4.3 46 74-119 29-74 (91)
44 3fm5_A Transcriptional regulat 60.4 12 0.00042 25.2 4.4 69 44-115 11-80 (150)
45 2qww_A Transcriptional regulat 60.3 32 0.0011 23.0 6.6 50 61-115 31-81 (154)
46 1ais_B TFB TFIIB, protein (tra 59.9 43 0.0015 24.0 7.6 67 52-118 124-194 (200)
47 3s2w_A Transcriptional regulat 59.4 38 0.0013 22.9 8.5 69 43-115 21-90 (159)
48 2nyx_A Probable transcriptiona 59.3 37 0.0013 23.3 6.9 38 78-116 49-86 (168)
49 1p4x_A Staphylococcal accessor 59.1 15 0.00052 28.0 5.1 40 77-116 35-77 (250)
50 1pdn_C Protein (PRD paired); p 58.9 20 0.00067 23.1 5.1 35 81-115 25-59 (128)
51 1tty_A Sigma-A, RNA polymerase 58.7 21 0.00072 22.2 5.0 34 88-121 37-70 (87)
52 1lj9_A Transcriptional regulat 58.6 21 0.00072 23.6 5.3 51 61-116 19-70 (144)
53 1jgs_A Multiple antibiotic res 58.2 20 0.00069 23.5 5.1 33 84-116 42-75 (138)
54 1s3j_A YUSO protein; structura 57.4 34 0.0012 22.8 6.3 52 61-116 27-78 (155)
55 1s7o_A Hypothetical UPF0122 pr 57.3 32 0.0011 22.9 5.9 47 75-121 23-70 (113)
56 3cqb_A Probable protease HTPX 56.8 1.2 4.2E-05 29.8 -1.4 20 2-21 69-88 (107)
57 1hsj_A Fusion protein consisti 56.8 13 0.00043 30.4 4.6 38 78-115 406-446 (487)
58 2jn6_A Protein CGL2762, transp 56.8 17 0.00059 22.9 4.4 40 75-114 6-48 (97)
59 3cdh_A Transcriptional regulat 56.8 39 0.0013 22.6 6.5 54 58-116 30-84 (155)
60 4hbl_A Transcriptional regulat 55.8 21 0.00073 24.0 5.0 51 61-115 31-81 (149)
61 3nqo_A MARR-family transcripti 54.7 33 0.0011 24.3 6.1 65 47-115 15-83 (189)
62 2fa5_A Transcriptional regulat 54.2 47 0.0016 22.3 8.0 68 45-116 21-90 (162)
63 3bpv_A Transcriptional regulat 54.0 22 0.00075 23.3 4.8 32 84-115 37-69 (138)
64 3bja_A Transcriptional regulat 52.5 26 0.0009 22.8 5.0 33 84-116 41-74 (139)
65 1z7u_A Hypothetical protein EF 52.5 36 0.0012 22.1 5.6 30 86-115 32-62 (112)
66 4aik_A Transcriptional regulat 52.4 38 0.0013 23.1 6.0 65 48-115 7-72 (151)
67 1k78_A Paired box protein PAX5 52.2 27 0.00093 23.6 5.1 37 80-116 39-75 (149)
68 2pg4_A Uncharacterized protein 51.8 22 0.00075 22.3 4.2 28 89-116 30-58 (95)
69 3e6m_A MARR family transcripti 51.1 26 0.00089 23.9 4.9 54 58-115 40-93 (161)
70 3hsr_A HTH-type transcriptiona 51.1 21 0.00072 23.8 4.3 51 60-115 25-76 (140)
71 1rp3_A RNA polymerase sigma fa 51.0 31 0.0011 24.7 5.5 46 75-120 188-234 (239)
72 3bj6_A Transcriptional regulat 50.7 32 0.0011 22.9 5.2 52 61-116 30-81 (152)
73 1u78_A TC3 transposase, transp 50.5 18 0.00062 24.0 3.9 35 80-114 13-47 (141)
74 2glo_A Brinker CG9653-PA; prot 50.5 24 0.00081 20.3 3.9 37 86-122 18-58 (59)
75 1or7_A Sigma-24, RNA polymeras 50.2 35 0.0012 23.7 5.5 43 77-119 143-186 (194)
76 3k0l_A Repressor protein; heli 50.2 35 0.0012 23.2 5.5 68 44-115 18-86 (162)
77 2x48_A CAG38821; archeal virus 49.7 16 0.00056 20.4 3.1 30 83-112 25-54 (55)
78 2fbk_A Transcriptional regulat 49.3 30 0.001 24.1 5.1 55 59-116 57-113 (181)
79 2fxa_A Protease production reg 49.0 41 0.0014 24.4 5.9 32 84-115 56-88 (207)
80 1z91_A Organic hydroperoxide r 49.0 20 0.0007 23.8 4.0 33 84-116 48-81 (147)
81 2zj8_A DNA helicase, putative 48.3 11 0.00037 32.8 3.0 46 79-124 573-618 (720)
82 3cjn_A Transcriptional regulat 48.3 21 0.00071 24.3 4.0 51 60-115 41-92 (162)
83 2qvo_A Uncharacterized protein 47.9 21 0.00072 22.5 3.7 26 90-115 31-56 (95)
84 3ulq_B Transcriptional regulat 47.7 46 0.0016 21.0 5.3 45 73-117 28-72 (90)
85 2hzt_A Putative HTH-type trans 47.4 46 0.0016 21.4 5.4 30 86-115 24-54 (107)
86 2k4b_A Transcriptional regulat 47.1 40 0.0014 21.9 5.0 40 75-115 36-79 (99)
87 2p6r_A Afuhel308 helicase; pro 46.8 28 0.00097 30.0 5.4 43 78-120 562-604 (702)
88 2pex_A Transcriptional regulat 46.0 42 0.0014 22.4 5.2 33 84-116 55-88 (153)
89 2vn2_A DNAD, chromosome replic 45.8 47 0.0016 22.3 5.4 26 90-115 52-77 (128)
90 3kp7_A Transcriptional regulat 45.7 64 0.0022 21.4 6.8 53 59-116 26-78 (151)
91 2fbi_A Probable transcriptiona 45.5 48 0.0016 21.6 5.4 51 60-115 25-76 (142)
92 4fx0_A Probable transcriptiona 44.1 58 0.002 22.1 5.8 27 90-116 53-79 (148)
93 2bv6_A MGRA, HTH-type transcri 44.0 65 0.0022 21.0 6.1 51 61-116 27-78 (142)
94 2lkp_A Transcriptional regulat 44.0 39 0.0013 21.9 4.7 60 78-140 36-103 (119)
95 4gyt_A Uncharacterized protein 43.5 43 0.0015 24.3 5.2 20 10-29 27-46 (194)
96 3boq_A Transcriptional regulat 42.6 50 0.0017 22.1 5.3 47 66-116 42-89 (160)
97 3tgn_A ADC operon repressor AD 41.0 52 0.0018 21.6 5.0 37 79-115 41-77 (146)
98 3c37_A Peptidase, M48 family; 40.9 3.3 0.00011 31.7 -1.4 21 1-21 84-105 (253)
99 1ub9_A Hypothetical protein PH 40.8 20 0.00068 22.2 2.7 29 88-116 29-57 (100)
100 3iwf_A Transcription regulator 40.7 35 0.0012 22.5 4.0 28 86-113 32-59 (107)
101 2ga1_A Protein of unknown func 39.9 51 0.0017 22.0 4.7 46 75-120 50-96 (106)
102 3may_A RV0203, possible export 39.6 37 0.0013 22.7 3.9 25 49-73 62-86 (101)
103 3nrv_A Putative transcriptiona 39.5 77 0.0026 20.8 5.8 33 84-116 48-81 (148)
104 2v79_A DNA replication protein 39.4 64 0.0022 22.1 5.3 28 88-115 50-77 (135)
105 1tbx_A ORF F-93, hypothetical 38.6 37 0.0013 21.2 3.8 32 84-115 16-52 (99)
106 2o3f_A Putative HTH-type trans 38.4 27 0.00093 23.1 3.2 28 86-113 36-63 (111)
107 2lfw_A PHYR sigma-like domain; 38.1 49 0.0017 22.6 4.7 49 74-122 93-142 (157)
108 3cuo_A Uncharacterized HTH-typ 37.7 36 0.0012 20.9 3.6 30 86-115 34-64 (99)
109 2dk5_A DNA-directed RNA polyme 37.4 66 0.0023 20.5 4.8 38 78-115 22-62 (91)
110 1g6u_A Domain swapped dimer; d 36.8 25 0.00086 19.6 2.2 15 9-23 15-29 (48)
111 3clo_A Transcriptional regulat 35.9 68 0.0023 23.9 5.4 47 73-119 196-242 (258)
112 2fsw_A PG_0823 protein; alpha- 35.7 45 0.0015 21.4 3.9 30 86-115 35-65 (107)
113 1s69_A Cyanoglobin, hemoglobin 35.7 67 0.0023 21.1 4.9 45 99-147 77-123 (124)
114 3m8j_A FOCB protein; all-alpha 35.4 62 0.0021 21.9 4.5 52 74-125 44-96 (111)
115 1h3o_B Transcription initiatio 34.8 57 0.0019 20.5 4.0 28 111-138 9-36 (76)
116 2f2e_A PA1607; transcription f 34.3 91 0.0031 21.3 5.5 30 86-115 34-63 (146)
117 3fxz_A Serine/threonine-protei 34.1 13 0.00044 28.1 1.0 44 79-122 91-134 (297)
118 2d1h_A ST1889, 109AA long hypo 33.1 59 0.002 20.0 4.1 29 87-115 34-62 (109)
119 2k27_A Paired box protein PAX- 33.1 23 0.0008 24.4 2.2 29 84-112 36-64 (159)
120 2pn6_A ST1022, 150AA long hypo 32.6 45 0.0015 22.5 3.7 28 89-116 17-44 (150)
121 1l3l_A Transcriptional activat 32.5 1.2E+02 0.0041 22.0 6.3 46 73-118 172-217 (234)
122 2imu_A Structural polyprotein 32.5 24 0.0008 20.0 1.7 10 104-113 4-13 (46)
123 1yyv_A Putative transcriptiona 31.8 51 0.0017 22.3 3.8 30 86-115 45-75 (131)
124 4a5n_A Uncharacterized HTH-typ 31.6 1E+02 0.0036 20.9 5.4 30 86-115 36-66 (131)
125 2eth_A Transcriptional regulat 31.4 91 0.0031 20.7 5.1 33 84-116 52-85 (154)
126 2w25_A Probable transcriptiona 31.0 51 0.0017 22.4 3.7 27 89-115 21-47 (150)
127 2q1z_A RPOE, ECF SIGE; ECF sig 31.0 23 0.00079 24.5 1.9 46 75-120 136-182 (184)
128 3zr8_X AVR3A11; protein bindin 30.8 30 0.001 21.2 2.1 22 76-97 18-41 (65)
129 2oqg_A Possible transcriptiona 30.8 60 0.0021 20.5 3.9 29 87-115 32-60 (114)
130 1p6r_A Penicillinase repressor 30.7 37 0.0013 20.6 2.6 32 84-115 17-53 (82)
131 2dbb_A Putative HTH-type trans 29.2 66 0.0022 21.7 4.0 28 89-116 23-50 (151)
132 3t72_q RNA polymerase sigma fa 29.0 81 0.0028 20.4 4.3 35 88-122 38-72 (99)
133 1y0u_A Arsenical resistance op 28.9 1.1E+02 0.0036 19.0 4.9 30 87-116 41-70 (96)
134 1i1g_A Transcriptional regulat 28.9 59 0.002 21.6 3.7 28 89-116 18-45 (141)
135 3lxp_A Non-receptor tyrosine-p 28.5 18 0.00062 27.4 1.0 44 80-123 110-153 (318)
136 1sd4_A Penicillinase repressor 28.4 49 0.0017 21.4 3.2 32 84-115 18-54 (126)
137 1on2_A Transcriptional regulat 28.3 1.2E+02 0.0041 19.9 5.2 28 88-115 21-48 (142)
138 2cyy_A Putative HTH-type trans 27.9 62 0.0021 21.9 3.7 28 89-116 21-48 (151)
139 3iuo_A ATP-dependent DNA helic 27.8 1.4E+02 0.0047 19.9 5.4 37 78-114 21-57 (122)
140 2ia0_A Putative HTH-type trans 27.6 61 0.0021 22.8 3.7 28 89-116 31-58 (171)
141 2cfx_A HTH-type transcriptiona 27.6 66 0.0023 21.7 3.8 27 89-115 19-45 (144)
142 2cg4_A Regulatory protein ASNC 27.1 64 0.0022 21.9 3.7 28 89-116 22-49 (152)
143 3i4p_A Transcriptional regulat 26.9 61 0.0021 22.4 3.6 26 90-115 18-43 (162)
144 1zl8_A LIN-7; heterodimer, alp 26.7 1E+02 0.0034 18.0 4.2 24 105-128 4-27 (53)
145 2c30_A Serine/threonine-protei 26.5 20 0.00068 27.4 0.9 43 80-122 117-159 (321)
146 3qt9_A Putative uncharacterize 26.5 42 0.0015 28.0 3.0 36 106-145 235-270 (427)
147 2l3i_A Aoxki4A, antimicrobial 25.9 45 0.0015 16.8 1.9 14 107-120 15-28 (30)
148 1okr_A MECI, methicillin resis 25.7 62 0.0021 20.8 3.2 29 87-115 22-54 (123)
149 2kko_A Possible transcriptiona 25.6 95 0.0033 19.8 4.2 37 77-115 28-64 (108)
150 1r1u_A CZRA, repressor protein 25.6 1.2E+02 0.0041 19.1 4.6 58 87-144 37-101 (106)
151 3dtc_A Mitogen-activated prote 25.6 14 0.00048 27.0 -0.1 47 77-123 78-124 (271)
152 3qkx_A Uncharacterized HTH-typ 25.4 37 0.0012 22.8 2.1 33 88-120 27-59 (188)
153 1vdy_A Hypothetical protein (R 25.3 1.7E+02 0.0059 20.3 7.6 67 77-143 48-130 (140)
154 2p5v_A Transcriptional regulat 25.2 73 0.0025 21.9 3.7 27 90-116 25-51 (162)
155 3p2c_A Putative glycosyl hydro 24.6 48 0.0016 28.0 3.0 36 106-145 263-298 (463)
156 3mdy_A Bone morphogenetic prot 24.4 23 0.00077 26.7 0.9 45 79-123 109-153 (337)
157 2qtq_A Transcriptional regulat 24.2 53 0.0018 22.5 2.8 33 88-120 35-67 (213)
158 2fu4_A Ferric uptake regulatio 24.1 1.2E+02 0.004 18.1 4.2 51 64-115 8-64 (83)
159 2asw_A Hypothetical protein AF 24.0 57 0.002 17.0 2.4 16 104-119 38-53 (56)
160 2e1c_A Putative HTH-type trans 23.8 75 0.0026 22.4 3.6 28 89-116 41-68 (171)
161 3bqz_B HTH-type transcriptiona 23.7 50 0.0017 22.3 2.6 33 88-120 21-53 (194)
162 3a7i_A MST3 kinase, serine/thr 23.3 17 0.00059 27.1 0.0 44 80-123 95-138 (303)
163 2x4h_A Hypothetical protein SS 23.3 84 0.0029 20.6 3.6 29 88-116 30-58 (139)
164 3soc_A Activin receptor type-2 23.1 25 0.00087 26.7 1.0 43 81-123 98-140 (322)
165 3q4u_A Activin receptor type-1 22.8 23 0.0008 26.2 0.7 42 80-121 81-122 (301)
166 3frw_A Putative Trp repressor 22.8 1.5E+02 0.005 19.9 4.6 33 81-113 50-82 (107)
167 3f1b_A TETR-like transcription 22.8 46 0.0016 22.6 2.2 32 88-119 33-64 (203)
168 3qp6_A CVIR transcriptional re 22.7 2.4E+02 0.0083 21.0 7.5 45 73-117 196-240 (265)
169 3gzi_A Transcriptional regulat 22.7 56 0.0019 22.5 2.7 35 88-122 36-70 (218)
170 3dew_A Transcriptional regulat 22.4 45 0.0015 22.6 2.1 33 88-120 27-59 (206)
171 2g9w_A Conserved hypothetical 21.7 98 0.0033 20.6 3.7 34 82-115 15-54 (138)
172 2oa4_A SIR5; structure, struct 21.3 1.7E+02 0.0058 19.3 4.7 36 79-114 40-75 (101)
173 2kxh_B Peptide of FAR upstream 21.3 98 0.0033 16.0 2.7 20 42-61 6-25 (31)
174 3o0g_D Cyclin-dependent kinase 21.1 69 0.0024 22.6 2.7 19 98-116 22-40 (149)
175 1x8b_A WEE1HU, WEE1-like prote 21.0 31 0.0011 25.1 1.0 46 78-123 84-134 (289)
176 3nul_A Profilin I; cytoskeleto 21.0 61 0.0021 22.1 2.5 18 7-24 37-54 (130)
177 3kmu_A ILK, integrin-linked ki 20.8 31 0.0011 24.9 1.0 46 78-123 82-130 (271)
178 1c9b_A General transcription f 20.4 2.4E+02 0.0081 20.0 7.0 69 52-120 118-190 (207)
179 3pgb_A Putative uncharacterize 20.3 63 0.0021 29.2 3.0 24 4-27 64-87 (797)
180 2zcm_A Biofilm operon icaabcd 20.3 61 0.0021 22.0 2.4 32 88-119 26-57 (192)
181 2htj_A P fimbrial regulatory p 20.2 1.4E+02 0.0047 17.9 3.9 29 88-116 13-41 (81)
182 2p0v_A Hypothetical protein BT 20.1 66 0.0023 27.3 3.0 37 105-145 280-316 (489)
183 3c2b_A Transcriptional regulat 20.1 54 0.0019 22.7 2.2 33 88-120 34-66 (221)
184 3lhq_A Acrab operon repressor 20.1 52 0.0018 22.5 2.0 33 88-120 33-65 (220)
No 1
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=100.00 E-value=1.5e-41 Score=311.18 Aligned_cols=143 Identities=15% Similarity=0.220 Sum_probs=132.8
Q ss_pred ccccCCCCCCCHHHHHHHHHHhhccccccccccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHcCCCCC-------CC
Q 043012 2 VLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIP-------CC 74 (151)
Q Consensus 2 ~L~~g~f~~L~p~elAAllS~~v~e~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~l~~~-------~~ 74 (151)
|||+|+|++|+|+||||+|||||||+|+.+. . .+.+++.|.+++.++++++.+|++++.+|+++++ ..
T Consensus 842 ~~~~~~~~~l~~~~~~a~ls~~v~~~~~~~~----~-~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 916 (997)
T 4a4z_A 842 LILDNFLGSFEPEEIVALLSVFVYEGKTREE----E-PPIVTPRLAKGKQRIEEIYKKMLCVFNTHQIPLTQDEAEFLDR 916 (997)
T ss_dssp HHHSSGGGGCCHHHHHHHHGGGSCCCCCSSC----C-CCCSSHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHGGGS
T ss_pred HHHhCcccCCCHHHHHHHHhhhhccccCCCC----C-CCCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCccchhhhccC
Confidence 7999999999999999999999999987321 1 2357899999999999999999999999999885 46
Q ss_pred CCchHHHHHHHhhCCCCHHHHHhhcCCChhHHHHHHHHHHHHHhhcCCCCC--CCHHHHHHHHHHHhhcCCCccccc
Q 043012 75 LDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPD--VDQRLQKNAVDASNVMDRPPISEL 149 (151)
Q Consensus 75 ~~~~l~~~v~~Wa~G~~f~eil~~t~l~EGdiVR~~rRl~elLrQl~~a~~--~~~~L~~k~~~a~~~i~R~iV~~~ 149 (151)
++|+||++||+||+|+||++||++|+++|||||||||||+|+||||++|++ +|++|++||++|+++|||||||+-
T Consensus 917 ~~~~l~~~v~~Wa~g~~f~~i~~~t~~~eG~~vR~~~rl~e~~~q~~~aa~~~g~~~l~~k~~~a~~~i~R~iv~~~ 993 (997)
T 4a4z_A 917 KRFAMMNVVYEWARGLSFKEIMEMSPEAEGTVVRVITWLDEICREVKTASIIIGNSTLHMKMSRAQELIKRDIVFAA 993 (997)
T ss_dssp CTTTTHHHHHHHHHTCCHHHHHHTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCGGGGCC
T ss_pred CChHHHHHHHHHhCCCCHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCeeecc
Confidence 899999999999999999999999999999999999999999999999996 499999999999999999999973
No 2
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.7e-41 Score=309.94 Aligned_cols=141 Identities=15% Similarity=0.264 Sum_probs=132.5
Q ss_pred ccccCCCCCCCHHHHHHHHHHhhccccccccccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHcCCCCC-----CCCC
Q 043012 2 VLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIP-----CCLD 76 (151)
Q Consensus 2 ~L~~g~f~~L~p~elAAllS~~v~e~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~l~~~-----~~~~ 76 (151)
|||+|+|++|+|+||||++||||||+++++ . +.+++.|.++++++++++.+|.++|.+|+++++ ..++
T Consensus 859 ~~~~g~~~~l~p~~~aa~~s~~v~~~~~~~------~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 931 (1010)
T 2xgj_A 859 LIFNGNFNELKPEQAAALLSCFAFQERCKE------A-PRLKPELAEPLKAMREIAAKIAKIMKDSKIEVVEKDYVESFR 931 (1010)
T ss_dssp HHHHTTTTTCCHHHHHHHHHHHHCCCCCSC------C-CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHTSC
T ss_pred HHHcCccCCCCHHHHHHHHeeeEeecCCCC------C-CCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCChhHhcccCC
Confidence 799999999999999999999999998632 1 345699999999999999999999999999988 5899
Q ss_pred chHHHHHHHhhCCCCHHHHHhhcCCChhHHHHHHHHHHHHHhhcCCCCCC--CHHHHHHHHHHHhhcCCCccccc
Q 043012 77 SQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDV--DQRLQKNAVDASNVMDRPPISEL 149 (151)
Q Consensus 77 ~~l~~~v~~Wa~G~~f~eil~~t~l~EGdiVR~~rRl~elLrQl~~a~~~--~~~L~~k~~~a~~~i~R~iV~~~ 149 (151)
|+||++||+||+|+||++||++|+++|||||||||||+||||||++|+++ |++|++||++|+++|||||||+-
T Consensus 932 ~~l~~~v~~Wa~g~~~~~i~~~t~~~eG~~vR~~~rl~ell~q~~~a~~~~g~~~l~~~~~~a~~~i~R~iv~~~ 1006 (1010)
T 2xgj_A 932 HELMEVVYEWCRGATFTQICKMTDVYEGSLIRMFKRLEELVKELVDVANTIGNSSLKEKMEAVLKLIHRDIVSAG 1006 (1010)
T ss_dssp CTTHHHHHHHTTTCCHHHHTTSCSSCHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCGGGGCC
T ss_pred hHHHHHHHHHhCCCCHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHhccCCeEecc
Confidence 99999999999999999999999999999999999999999999999874 99999999999999999999973
No 3
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.8e-41 Score=311.17 Aligned_cols=141 Identities=15% Similarity=0.267 Sum_probs=109.5
Q ss_pred ccccCCCCCCCHHHHHHHHHHhhccccccccccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHcCCCCC-----CCCC
Q 043012 2 VLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSYIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIP-----CCLD 76 (151)
Q Consensus 2 ~L~~g~f~~L~p~elAAllS~~v~e~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~l~~~-----~~~~ 76 (151)
|||+|+|++|+|+||||+|||||||+++++. +.+++.|.+++..+++++.+|+++|.+|+++++ ..|+
T Consensus 957 ~~~~~~~~~l~~~~~aa~~s~~v~~~~~~~~-------~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 1029 (1108)
T 3l9o_A 957 LIFNGNFNELKPEQAAALLSCFAFQERCKEA-------PRLKPELAEPLKAMREIAAKIAKIMKDSKIEVVEKDYVESFR 1029 (1108)
T ss_dssp HHHHHCCCSSCCTHHHHHTCC-------------------------CHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHC
T ss_pred HHHhCcccCCCHHHHHHHHhheeeecccCCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCChHHhccCCC
Confidence 7999999999999999999999999987431 235788999999999999999999999999986 3589
Q ss_pred chHHHHHHHhhCCCCHHHHHhhcCCChhHHHHHHHHHHHHHhhcCCCCCC--CHHHHHHHHHHHhhcCCCccccc
Q 043012 77 SQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDV--DQRLQKNAVDASNVMDRPPISEL 149 (151)
Q Consensus 77 ~~l~~~v~~Wa~G~~f~eil~~t~l~EGdiVR~~rRl~elLrQl~~a~~~--~~~L~~k~~~a~~~i~R~iV~~~ 149 (151)
|+||++||+||+|+||++||++|+++|||||||||||+|+||||++|+++ |++|.+||++|+++|||||||+-
T Consensus 1030 ~~l~~~v~~Wa~g~~f~~i~~~t~~~eG~~vR~~~rl~e~l~q~~~aa~~~g~~~l~~k~~~a~~~i~r~iv~~~ 1104 (1108)
T 3l9o_A 1030 HELMEVVYEWCRGATFTQICKMTDVYEGSLIRMFKRLEELVKELVDVANTIGNSSLKEKMEAVLKLIHRDIVSAG 1104 (1108)
T ss_dssp CSCHHHHHHHHC----CCGGGTC--CHHHHHHHHHHHHHHHSCCCC----CCCHHHHHHHHHHHHHHHHHTCCCC
T ss_pred hHHHHHHHHHhCCCCHHHHHhcCCCCchhhhhHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCEEeec
Confidence 99999999999999999999999999999999999999999999999974 99999999999999999999974
No 4
>4dyq_A Gene 1 protein; GP1, octamer, DNA-binding, viral protein; 1.50A {Shigella phage SF6} PDB: 4dyc_A 4dyr_A 3hef_A 4dzj_A 4dzp_A
Probab=92.37 E-value=0.15 Score=36.11 Aligned_cols=53 Identities=15% Similarity=0.179 Sum_probs=46.6
Q ss_pred CCCCCchHHHHHHHh-hCCCCHHHHHhhcCC-ChhHHHHHHHHHHHHHhhcCCCC
Q 043012 72 PCCLDSQFSGMVEAW-ASGLTWREMMMDCAL-DDGDLARLLRRTIDLLAQIPKLP 124 (151)
Q Consensus 72 ~~~~~~~l~~~v~~W-a~G~~f~eil~~t~l-~EGdiVR~~rRl~elLrQl~~a~ 124 (151)
|..+++.+++-+..+ +.|.|+.+||...+| +.-+|=||+.+=.|+..++..|-
T Consensus 10 Ptk~t~e~~e~I~~~i~~G~sl~~i~~~~~~ps~~T~~~W~~~~~ef~e~~~~Ar 64 (140)
T 4dyq_A 10 PSDYMPEVADDICSLLSSGESLLKVCKRPGMPDKSTVFRWLAKHEDFRDKYAKAT 64 (140)
T ss_dssp CCSCCTTHHHHHHHHHHTTCCHHHHHTSTTCCCHHHHHHHHHHCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHCCCcHHHHHhcCCCCCHHHHHHHHHcCHHHHHHHHHHH
Confidence 568889999888777 899999999999999 79999999999888888777663
No 5
>3idw_A Actin cytoskeleton-regulatory complex protein SLA; clathrin adaptor, endocytosis, SAM domain, yeast, actin-BIND membrane, endosome; 1.85A {Saccharomyces cerevisiae}
Probab=88.73 E-value=0.4 Score=30.47 Aligned_cols=26 Identities=19% Similarity=0.451 Sum_probs=21.1
Q ss_pred HHHhhcCCChhHHHHHHHHHHHHHhh
Q 043012 94 EMMMDCALDDGDLARLLRRTIDLLAQ 119 (151)
Q Consensus 94 eil~~t~l~EGdiVR~~rRl~elLrQ 119 (151)
++|..-++.||||+|.++.++...++
T Consensus 42 ~~Lr~LGi~eGDIIrVmk~l~~k~~r 67 (72)
T 3idw_A 42 SMLRTLGLREGDIVRVMKHLDKKFGR 67 (72)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCCchhhHHHHHHHHHHHhCc
Confidence 46667788999999999999876544
No 6
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=86.21 E-value=1.5 Score=23.78 Aligned_cols=34 Identities=9% Similarity=-0.001 Sum_probs=29.4
Q ss_pred HHHHHHhhCCCCHHHHHhhcCCChhHHHHHHHHH
Q 043012 80 SGMVEAWASGLTWREMMMDCALDDGDLARLLRRT 113 (151)
Q Consensus 80 ~~~v~~Wa~G~~f~eil~~t~l~EGdiVR~~rRl 113 (151)
..++..+..|.|..+|.+..+++...+-|++++.
T Consensus 12 ~~i~~~~~~g~s~~~IA~~lgis~~Tv~~~~~~~ 45 (51)
T 1tc3_C 12 AQLDVMKLLNVSLHEMSRKISRSRHCIRVYLKDP 45 (51)
T ss_dssp HHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHCS
T ss_pred HHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHhhH
Confidence 3666778899999999999999999999988753
No 7
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=84.65 E-value=3.7 Score=26.02 Aligned_cols=51 Identities=10% Similarity=0.028 Sum_probs=40.2
Q ss_pred CCCchH-HHHHHHhhCCCCHHHHHhhcCCChhHHHHHHHHHHHHHhhcCCCC
Q 043012 74 CLDSQF-SGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLP 124 (151)
Q Consensus 74 ~~~~~l-~~~v~~Wa~G~~f~eil~~t~l~EGdiVR~~rRl~elLrQl~~a~ 124 (151)
.+++.+ ..++..+..|.|..+|.+..++....|-||+++....-.+.....
T Consensus 22 ~ys~e~k~~~v~~~~~g~s~~~iA~~~gIs~sTl~rW~k~~~~~~~~~~~~~ 73 (87)
T 2elh_A 22 SLTPRDKIHAIQRIHDGESKASVARDIGVPESTLRGWCKNEDKLRFMSRQSA 73 (87)
T ss_dssp SCCHHHHHHHHHHHHHTCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHTTCCC
T ss_pred CCCHHHHHHHHHHHHCCCCHHHHHHHHCcCHHHHHHHHHHHHhccccccCCC
Confidence 455555 455566678999999999999999999999998887766665554
No 8
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=80.76 E-value=6.6 Score=23.30 Aligned_cols=47 Identities=11% Similarity=0.106 Sum_probs=40.5
Q ss_pred CCCCchHHHHHHHhhCCCCHHHHHhhcCCChhHHHHHHHHHHHHHhh
Q 043012 73 CCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQ 119 (151)
Q Consensus 73 ~~~~~~l~~~v~~Wa~G~~f~eil~~t~l~EGdiVR~~rRl~elLrQ 119 (151)
..+++.-..++..+..|.|..+|.+..+++++.+=+.++|+.+-|+.
T Consensus 10 ~~L~~~e~~il~~~~~g~s~~eIA~~l~is~~tV~~~~~~~~~kl~~ 56 (74)
T 1fse_A 10 PLLTKREREVFELLVQDKTTKEIASELFISEKTVRNHISNAMQKLGV 56 (74)
T ss_dssp CCCCHHHHHHHHHHTTTCCHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCC
Confidence 45667777888778999999999999999999999999988877764
No 9
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=80.56 E-value=1.4 Score=38.41 Aligned_cols=71 Identities=10% Similarity=0.064 Sum_probs=53.4
Q ss_pred hHHHHHHHhhCCCCHHHHHhhcCCChhHHHHHHHHHHHHHhhcCCCCC--CCHHHHHHHHHHHhhcCCCcccc
Q 043012 78 QFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPD--VDQRLQKNAVDASNVMDRPPISE 148 (151)
Q Consensus 78 ~l~~~v~~Wa~G~~f~eil~~t~l~EGdiVR~~rRl~elLrQl~~a~~--~~~~L~~k~~~a~~~i~R~iV~~ 148 (151)
...-+.++|.++.++.+|++..+++.||+........-+++.+...+. ....+...+.+-...|..|+-.+
T Consensus 583 k~~~ll~~~~~~~~~~~i~~~y~~~~gdl~~l~~~a~~l~~a~~~i~~~~~~~~~~~~l~~l~~rl~~gv~~e 655 (715)
T 2va8_A 583 KVALIMKDWMDEVDEDTILSKYNIGSGDLRNMVETMDWLTYSAYHLSRELKLNEHADKLRILNLRVRDGIKEE 655 (715)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCCGG
T ss_pred HHHHHHHHHHcCCCHHHHHHHHCCChhhHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHcCCChh
Confidence 356677999999999999999999999999988877777777655543 25566666666666666555443
No 10
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=80.50 E-value=6.3 Score=23.14 Aligned_cols=48 Identities=17% Similarity=0.181 Sum_probs=38.8
Q ss_pred CCCchHHHHHH-HhhCCCCHHHHHhhcCCChhHHHHHHHHHHHHHhhcC
Q 043012 74 CLDSQFSGMVE-AWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIP 121 (151)
Q Consensus 74 ~~~~~l~~~v~-~Wa~G~~f~eil~~t~l~EGdiVR~~rRl~elLrQl~ 121 (151)
.+++.--.++. .+..|.|+.+|.+..+++++.+=+.+.|...-|++.-
T Consensus 15 ~L~~~~r~il~l~~~~g~s~~eIA~~lgis~~tv~~~~~ra~~~l~~~l 63 (70)
T 2o8x_A 15 DLTTDQREALLLTQLLGLSYADAAAVCGCPVGTIRSRVARARDALLADA 63 (70)
T ss_dssp SSCHHHHHHHHHHHTSCCCHHHHHHHHTSCHHHHHHHHHHHHHHHHC--
T ss_pred hCCHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHh
Confidence 34455556664 4699999999999999999999999999999888754
No 11
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=78.10 E-value=9.4 Score=25.58 Aligned_cols=54 Identities=6% Similarity=-0.010 Sum_probs=37.8
Q ss_pred HHHHHHHHHcCCCCCCCCCchHHHHHHHhhCCCCHHHHHhhcCCChhHHHHHHHHHHH
Q 043012 58 SSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTID 115 (151)
Q Consensus 58 ~~l~~~~~~~~l~~~~~~~~~l~~~v~~Wa~G~~f~eil~~t~l~EGdiVR~~rRl~e 115 (151)
..+......+|+..+ .+.++..++. ..|.+..+|.+...+..+.+-|.+.+|++
T Consensus 18 ~~~~~~~~~~~lt~~---q~~iL~~l~~-~~~~t~~eLa~~l~~~~~tvs~~l~~Le~ 71 (145)
T 3g3z_A 18 NVFDKWIGQQDLNYN---LFAVLYTLAT-EGSRTQKHIGEKWSLPKQTVSGVCKTLAG 71 (145)
T ss_dssp HHHHHHHHTTTCCHH---HHHHHHHHHH-HCSBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHH---HHHHHHHHHH-CCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 334444556776422 1334443433 35699999999999999999999999987
No 12
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=75.70 E-value=4.1 Score=28.11 Aligned_cols=55 Identities=9% Similarity=0.079 Sum_probs=40.9
Q ss_pred HHHHHHHHHcCCCCCCCCCchHHHHHHHhhCC-CCHHHHHhhcCCChhHHHHHHHHHHH
Q 043012 58 SSFLELQEKHGVEIPCCLDSQFSGMVEAWASG-LTWREMMMDCALDDGDLARLLRRTID 115 (151)
Q Consensus 58 ~~l~~~~~~~~l~~~~~~~~~l~~~v~~Wa~G-~~f~eil~~t~l~EGdiVR~~rRl~e 115 (151)
.++......+|+..+ .+.+...++.|-.| .+..+|.+...+..+.+-|.+.||++
T Consensus 22 ~~~~~~l~~~gLt~~---q~~vL~~L~~~~~~~~t~~eLa~~l~~~~~tvs~~v~~Le~ 77 (147)
T 4b8x_A 22 GEVDAVVKPYGLTFA---RYEALVLLTFSKSGELPMSKIGERLMVHPTSVTNTVDRLVR 77 (147)
T ss_dssp HHHHHHHGGGTCCHH---HHHHHHHHHTSGGGEEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHH---HHHHHHHHHHCCCCCcCHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 445555566787633 24455556666554 89999999999999999999999987
No 13
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=75.50 E-value=9.1 Score=24.16 Aligned_cols=46 Identities=13% Similarity=0.305 Sum_probs=37.8
Q ss_pred CCchHHHHHHH-hhCCCCHHHHHhhcCCChhHHHHHHHHHHHHHhhc
Q 043012 75 LDSQFSGMVEA-WASGLTWREMMMDCALDDGDLARLLRRTIDLLAQI 120 (151)
Q Consensus 75 ~~~~l~~~v~~-Wa~G~~f~eil~~t~l~EGdiVR~~rRl~elLrQl 120 (151)
+.+.--.++.. ...|.|..||-+..+++++.+=+.+.|...-|++.
T Consensus 38 L~~~~r~vl~l~~~~g~s~~eIA~~lgis~~tV~~~l~ra~~~Lr~~ 84 (92)
T 3hug_A 38 LSAEHRAVIQRSYYRGWSTAQIATDLGIAEGTVKSRLHYAVRALRLT 84 (92)
T ss_dssp SCHHHHHHHHHHHTSCCCHHHHHHHHTSCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 44555566654 78999999999999999999999988888887764
No 14
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=73.86 E-value=7.4 Score=22.30 Aligned_cols=39 Identities=8% Similarity=-0.002 Sum_probs=33.0
Q ss_pred HHHHHhhCCCCHHHHHhhcCCChhHHHHHHHHHHHHHhh
Q 043012 81 GMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQ 119 (151)
Q Consensus 81 ~~v~~Wa~G~~f~eil~~t~l~EGdiVR~~rRl~elLrQ 119 (151)
.++...+.|.|..||-+..+++++++=..++|..+-|+-
T Consensus 5 ~vl~l~~~g~s~~eIA~~l~is~~tV~~~~~~~~~kl~~ 43 (61)
T 2jpc_A 5 QVLKLIDEGYTNHGISEKLHISIKTVETHRMNMMRKLQV 43 (61)
T ss_dssp HHHHHHHTSCCSHHHHHHTCSCHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHCC
Confidence 455557999999999999999999999988888776653
No 15
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=72.71 E-value=17 Score=24.18 Aligned_cols=29 Identities=24% Similarity=0.248 Sum_probs=26.9
Q ss_pred hCCCCHHHHHhhcCCChhHHHHHHHHHHH
Q 043012 87 ASGLTWREMMMDCALDDGDLARLLRRTID 115 (151)
Q Consensus 87 a~G~~f~eil~~t~l~EGdiVR~~rRl~e 115 (151)
..|.+..+|.+..++..+.+-|.+++|++
T Consensus 48 ~~~~~~~~la~~l~i~~~~vs~~l~~Le~ 76 (147)
T 2hr3_A 48 GGDVTPSELAAAERMRSSNLAALLRELER 76 (147)
T ss_dssp TSCBCHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHhCCChhhHHHHHHHHHH
Confidence 35689999999999999999999999998
No 16
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=72.47 E-value=17 Score=23.90 Aligned_cols=59 Identities=15% Similarity=0.175 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHc-CCCCCCCCCchHHHHHHHhhCCCCHHHHHhhcCCChhHHHHHHHHHHH
Q 043012 53 LDEHRSSFLELQEKH-GVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTID 115 (151)
Q Consensus 53 l~~~~~~l~~~~~~~-~l~~~~~~~~~l~~~v~~Wa~G~~f~eil~~t~l~EGdiVR~~rRl~e 115 (151)
+..+...+.....++ |+..+ ...++..++. ..+.+..+|.+..++..+.+-|.+++|.+
T Consensus 12 ~~~~~~~~~~~~~~~~~l~~~---~~~iL~~l~~-~~~~~~~ela~~l~is~~~vs~~l~~L~~ 71 (142)
T 3bdd_A 12 LKVADETISNLFEKQLGISLT---RYSILQTLLK-DAPLHQLALQERLQIDRAAVTRHLKLLEE 71 (142)
T ss_dssp HHHHHHHHHHHHHHHHSSCHH---HHHHHHHHHH-HCSBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCHH---HHHHHHHHHh-CCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 344444444444443 55422 1233333332 35699999999999999999999999988
No 17
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=72.43 E-value=8.2 Score=24.05 Aligned_cols=46 Identities=9% Similarity=0.149 Sum_probs=38.3
Q ss_pred CCCchHHHHHHHhhCCCCHHHHHhhcCCChhHHHHHHHHHHHHHhh
Q 043012 74 CLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQ 119 (151)
Q Consensus 74 ~~~~~l~~~v~~Wa~G~~f~eil~~t~l~EGdiVR~~rRl~elLrQ 119 (151)
.+.+.-..++...+.|.|..||.+..+++++.+=+.++|...-|+.
T Consensus 21 ~Lt~~e~~vl~l~~~g~s~~eIA~~l~is~~tV~~~l~r~~~kL~~ 66 (82)
T 1je8_A 21 QLTPRERDILKLIAQGLPNKMIARRLDITESTVKVHVKHMLKKMKL 66 (82)
T ss_dssp GSCHHHHHHHHHHTTTCCHHHHHHHHTSCHHHHHHHHHHHHHHTTC
T ss_pred cCCHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHcC
Confidence 4556666777777999999999999999999999988887776654
No 18
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=72.24 E-value=20 Score=27.26 Aligned_cols=66 Identities=6% Similarity=0.004 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCchHHHHHHHhhCC---CCHHHHHhhcCCChhHHHHHHHHHHHH
Q 043012 46 VINVINVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASG---LTWREMMMDCALDDGDLARLLRRTIDL 116 (151)
Q Consensus 46 l~~~~~~l~~~~~~l~~~~~~~~l~~~~~~~~~l~~~v~~Wa~G---~~f~eil~~t~l~EGdiVR~~rRl~el 116 (151)
+...+.....+......+...+|+.. ..+.-+.+-|.+| .+-.+|.+...+..+.+.|.+.||++-
T Consensus 133 ~~~l~~~~~~~~~~~~~~~~~~gLt~-----~q~~vL~~L~~~~~~~~t~~eLa~~l~i~~~tvt~~v~rLe~~ 201 (250)
T 1p4x_A 133 SKEFLNLMMYTMYFKNIIKKHLTLSF-----VEFTILAIITSQNKNIVLLKDLIETIHHKYPQTVRALNNLKKQ 201 (250)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCSSCH-----HHHHHHHHHHTTTTCCEEHHHHHHHSSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCCCH-----HHHHHHHHHHhCCCCCcCHHHHHHHHCCChhhHHHHHHHHHHC
Confidence 44433333334444445556677653 2333444556553 799999999999999999999999874
No 19
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=71.98 E-value=17 Score=24.15 Aligned_cols=52 Identities=6% Similarity=-0.038 Sum_probs=36.9
Q ss_pred HHHHHHHcCCCCCCCCCchHHHHHHHhhCCCCHHHHHhhcCCChhHHHHHHHHHHHH
Q 043012 60 FLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDL 116 (151)
Q Consensus 60 l~~~~~~~~l~~~~~~~~~l~~~v~~Wa~G~~f~eil~~t~l~EGdiVR~~rRl~el 116 (151)
+......+|+.. ....++..+ |..|.+..+|.+..+++.+.+-|.+++|.+.
T Consensus 26 ~~~~~~~~~l~~---~~~~iL~~l--~~~~~~~~ela~~l~~s~~tvs~~l~~Le~~ 77 (146)
T 2gxg_A 26 LNRRLGELNLSY---LDFLVLRAT--SDGPKTMAYLANRYFVTQSAITASVDKLEEM 77 (146)
T ss_dssp HHHHHHTTTCCH---HHHHHHHHH--TTSCBCHHHHHHHTTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCCCH---HHHHHHHHH--hcCCcCHHHHHHHhCCCchhHHHHHHHHHHC
Confidence 334445566542 123344444 3666899999999999999999999999884
No 20
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=71.94 E-value=3.1 Score=22.76 Aligned_cols=34 Identities=9% Similarity=0.110 Sum_probs=28.2
Q ss_pred HHHHHHHhhCCCCHHHHHhhcCCChhHHHHHHHH
Q 043012 79 FSGMVEAWASGLTWREMMMDCALDDGDLARLLRR 112 (151)
Q Consensus 79 l~~~v~~Wa~G~~f~eil~~t~l~EGdiVR~~rR 112 (151)
...++..|..|.|..+|.+..+++..+|-|++++
T Consensus 11 ~~~i~~l~~~g~s~~~ia~~lgvs~~Tv~r~l~~ 44 (52)
T 1jko_C 11 QEQISRLLEKGHPRQQLAIIFGIGVSTLYRYFPA 44 (52)
T ss_dssp HHHHHHHHHTTCCHHHHHHTTSCCHHHHHHHSCT
T ss_pred HHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 3455566889999999999999999999888765
No 21
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=70.76 E-value=11 Score=25.36 Aligned_cols=44 Identities=9% Similarity=0.071 Sum_probs=36.1
Q ss_pred chHHHHHHHhhCCCCHHHHHhhcCCChhHHHHHHHHHHHHHhhc
Q 043012 77 SQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQI 120 (151)
Q Consensus 77 ~~l~~~v~~Wa~G~~f~eil~~t~l~EGdiVR~~rRl~elLrQl 120 (151)
+.--.++..+..|.|+.||.+..+++++.+=+.+.|...-||+.
T Consensus 112 ~~~r~v~~~~~~g~s~~EIA~~lgis~~tV~~~~~ra~~~Lr~~ 155 (164)
T 3mzy_A 112 KFEKEVLTYLIRGYSYREIATILSKNLKSIDNTIQRIRKKSEEW 155 (164)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 44445555789999999999999999999988888887777763
No 22
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=70.58 E-value=13 Score=23.33 Aligned_cols=54 Identities=13% Similarity=0.147 Sum_probs=37.6
Q ss_pred HHHHHHHHcCCCCCCCCCchHHHHHHHhhCCCCHHHHHhhcCCChhHHHHHHHHHHHH
Q 043012 59 SFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDL 116 (151)
Q Consensus 59 ~l~~~~~~~~l~~~~~~~~~l~~~v~~Wa~G~~f~eil~~t~l~EGdiVR~~rRl~el 116 (151)
++......+|+.. ....+...+.. ..+.+..+|.+..+++.+.+-|.+++|.+.
T Consensus 8 ~~~~~l~~~~l~~---~~~~il~~l~~-~~~~s~~ela~~l~is~~tv~~~l~~L~~~ 61 (109)
T 1sfx_A 8 ELVKALEKLSFKP---SDVRIYSLLLE-RGGMRVSEIARELDLSARFVRDRLKVLLKR 61 (109)
T ss_dssp HHHHHHHHTCCCH---HHHHHHHHHHH-HCCBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCH---HHHHHHHHHHH-cCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 3444445666642 22344444422 367999999999999999999999999874
No 23
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=69.99 E-value=12 Score=22.13 Aligned_cols=46 Identities=9% Similarity=0.111 Sum_probs=36.4
Q ss_pred CCchHHHHHHHhh-----CCCCHHHHHhhcCCChhHHHHHHHHHHHHHhhc
Q 043012 75 LDSQFSGMVEAWA-----SGLTWREMMMDCALDDGDLARLLRRTIDLLAQI 120 (151)
Q Consensus 75 ~~~~l~~~v~~Wa-----~G~~f~eil~~t~l~EGdiVR~~rRl~elLrQl 120 (151)
+++.--.++..-. .|.|+.||-+..+++++.+=+.+.|...-|++.
T Consensus 6 L~~~er~il~l~~~l~~~~g~s~~eIA~~lgis~~tV~~~~~ra~~kLr~~ 56 (68)
T 2p7v_B 6 LTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHP 56 (68)
T ss_dssp CCHHHHHHHHHHTTTTSSSCCCHHHHHHHHTCCHHHHHHHHHHHHHGGGSC
T ss_pred CCHHHHHHHHHHHccCCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 4444555554443 899999999999999999999999988877764
No 24
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=69.41 E-value=7.7 Score=27.13 Aligned_cols=70 Identities=7% Similarity=-0.023 Sum_probs=43.2
Q ss_pred chhHHHHHHHHHHHHHHH-HHHHHHcCCCCCCCCCchHHHHHHHhhCCCCHHHHHhhcCCChhHHHHHHHHHHH
Q 043012 43 STTVINVINVLDEHRSSF-LELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTID 115 (151)
Q Consensus 43 ~~~l~~~~~~l~~~~~~l-~~~~~~~~l~~~~~~~~~l~~~v~~Wa~G~~f~eil~~t~l~EGdiVR~~rRl~e 115 (151)
...+...+..+.+...+. ......+|+..+ .+.++..++..-.|.+..+|.+...+..+.+-|.++||++
T Consensus 24 ~~~l~~~l~~~~~~~~~~~~~~l~~~glt~~---q~~vL~~L~~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le~ 94 (166)
T 3deu_A 24 ESPLGSDLARLVRIWRALIDHRLKPLELTQT---HWVTLHNIHQLPPDQSQIQLAKAIGIEQPSLVRTLDQLED 94 (166)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHTTTTTCCHH---HHHHHHHHHHSCSSEEHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhcCCCHH---HHHHHHHHHHcCCCCCHHHHHHHHCCCHhhHHHHHHHHHH
Confidence 344555555554443332 233334554422 1333333333335689999999999999999999999987
No 25
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=69.38 E-value=12 Score=24.42 Aligned_cols=47 Identities=13% Similarity=0.092 Sum_probs=40.8
Q ss_pred CCCCCchHHHHHHHhhCCCCHHHHHhhcCCChhHHHHHHHHHHHHHh
Q 043012 72 PCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLA 118 (151)
Q Consensus 72 ~~~~~~~l~~~v~~Wa~G~~f~eil~~t~l~EGdiVR~~rRl~elLr 118 (151)
...+.+.-..++..++.|.|..||-+..+++++.+=..++|+.+-|+
T Consensus 32 ~~~Lt~re~~Vl~l~~~G~s~~EIA~~L~iS~~TV~~~l~ri~~KLg 78 (99)
T 1p4w_A 32 DKRLSPKESEVLRLFAEGFLVTEIAKKLNRSIKTISSQKKSAMMKLG 78 (99)
T ss_dssp SSSCCHHHHHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHC
Confidence 45688888889988999999999999999999999888888766654
No 26
>3shg_B VBHA; ampylation, adenylylation, toxin-antitoxin complex, FIC fold transfer, transferase-protein binding complex; HET: TLA; 1.50A {Bartonella schoenbuchensis R1}
Probab=69.18 E-value=3.3 Score=25.26 Aligned_cols=24 Identities=21% Similarity=0.202 Sum_probs=20.6
Q ss_pred CCCchHHHHHHHhhCC-CCHHHHHh
Q 043012 74 CLDSQFSGMVEAWASG-LTWREMMM 97 (151)
Q Consensus 74 ~~~~~l~~~v~~Wa~G-~~f~eil~ 97 (151)
.+|+.+...+..|++| .|++++.+
T Consensus 27 Epd~~~l~~~erwv~GEis~~e~i~ 51 (61)
T 3shg_B 27 EPDPQVVAQMERVVVGELETSDVIK 51 (61)
T ss_dssp CCCHHHHHHHHHHHHTSSCHHHHHH
T ss_pred CCCHHHHHHHHHHHHccCCHHHHHH
Confidence 3568999999999999 88988875
No 27
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=68.96 E-value=22 Score=23.46 Aligned_cols=66 Identities=14% Similarity=0.055 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHcCCCCCCCCCchHHHHHHHhh-CCCCHHHHHhhcCCChhHHHHHHHHHHH
Q 043012 46 VINVINVLDEHR-SSFLELQEKHGVEIPCCLDSQFSGMVEAWA-SGLTWREMMMDCALDDGDLARLLRRTID 115 (151)
Q Consensus 46 l~~~~~~l~~~~-~~l~~~~~~~~l~~~~~~~~~l~~~v~~Wa-~G~~f~eil~~t~l~EGdiVR~~rRl~e 115 (151)
+...+..+.... ..+......+|+..+ .+.++..++ |. .+.+..+|.+..+++.+.+-|.+++|++
T Consensus 11 l~~~l~~~~~~~~~~~~~~~~~~~l~~~---~~~iL~~l~-~~~~~~t~~~la~~l~~s~~~vs~~l~~L~~ 78 (146)
T 2fbh_A 11 FGTLLAQTSRAWRAELDRRLSHLGLSQA---RWLVLLHLA-RHRDSPTQRELAQSVGVEGPTLARLLDGLES 78 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHTGGGCCTTT---HHHHHHHHH-HCSSCCBHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCHH---HHHHHHHHH-HcCCCCCHHHHHHHhCCChhhHHHHHHHHHH
Confidence 444444343322 223333445665422 123333332 43 4589999999999999999999999987
No 28
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=68.91 E-value=16 Score=24.07 Aligned_cols=52 Identities=13% Similarity=0.070 Sum_probs=36.4
Q ss_pred HHHHHHHcCCCCCCCCCchHHHHHHHhhC---CCCHHHHHhhcCCChhHHHHHHHHHHHH
Q 043012 60 FLELQEKHGVEIPCCLDSQFSGMVEAWAS---GLTWREMMMDCALDDGDLARLLRRTIDL 116 (151)
Q Consensus 60 l~~~~~~~~l~~~~~~~~~l~~~v~~Wa~---G~~f~eil~~t~l~EGdiVR~~rRl~el 116 (151)
+......+|+.. ..+.-+.+-|.. |.+..+|.+..++..+.+-|.+++|++-
T Consensus 23 ~~~~~~~~~lt~-----~~~~iL~~l~~~~~~~~~~~ela~~l~~~~~tvs~~l~~Le~~ 77 (141)
T 3bro_A 23 FDIFAKKYDLTG-----TQMTIIDYLSRNKNKEVLQRDLESEFSIKSSTATVLLQRMEIK 77 (141)
T ss_dssp HHHHHHTTTCCH-----HHHHHHHHHHHTTTSCCBHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCH-----HHHHHHHHHHHCCCCCcCHHHHHHHHCCCcchHHHHHHHHHHC
Confidence 344444566542 223333345555 4899999999999999999999999873
No 29
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=68.49 E-value=9.9 Score=25.35 Aligned_cols=57 Identities=0% Similarity=-0.032 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCchHHHHHHHhh---CCCCHHHHHhhcCCChhHHHHHHHHHHH
Q 043012 54 DEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWA---SGLTWREMMMDCALDDGDLARLLRRTID 115 (151)
Q Consensus 54 ~~~~~~l~~~~~~~~l~~~~~~~~~l~~~v~~Wa---~G~~f~eil~~t~l~EGdiVR~~rRl~e 115 (151)
..+...+......+|+..+ .+.++. +-|. .|.+..+|.+...+..+.+-|.+.||++
T Consensus 20 ~~~~~~~~~~~~~~~lt~~---q~~vL~--~l~~~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~ 79 (127)
T 2frh_A 20 TYADKLKSLIKKEFSISFE---EFAVLT--YISENKEKEYYLKDIINHLNYKQPQVVKAVKILSQ 79 (127)
T ss_dssp HHHHHHHHHHHHTTCCCHH---HHHHHH--HHHHTCCSEEEHHHHHHHSSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHH---HHHHHH--HHHhccCCCcCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3333444445556666532 123333 4454 4689999999999999999999999987
No 30
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=67.91 E-value=19 Score=23.79 Aligned_cols=51 Identities=8% Similarity=0.028 Sum_probs=36.3
Q ss_pred HHHHHcCCCCCCCCCchHHHHHHHhhCCCCHHHHHhhcCCChhHHHHHHHHHHHH
Q 043012 62 ELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDL 116 (151)
Q Consensus 62 ~~~~~~~l~~~~~~~~~l~~~v~~Wa~G~~f~eil~~t~l~EGdiVR~~rRl~el 116 (151)
.....+|+..+ ...++..++. ..|.+..+|.+..+++.+.+-|.+++|.+.
T Consensus 24 ~~~~~~~l~~~---~~~iL~~l~~-~~~~~~~~la~~l~~s~~tvs~~l~~L~~~ 74 (145)
T 2a61_A 24 KVLRDFGITPA---QFDILQKIYF-EGPKRPGELSVLLGVAKSTVTGLVKRLEAD 74 (145)
T ss_dssp TTHHHHTCCHH---HHHHHHHHHH-HCCBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred HHHHHcCCCHH---HHHHHHHHHH-cCCCCHHHHHHHHCCCchhHHHHHHHHHHC
Confidence 33345665422 2344444433 457999999999999999999999999873
No 31
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=67.28 E-value=16 Score=23.28 Aligned_cols=48 Identities=17% Similarity=0.174 Sum_probs=40.8
Q ss_pred CCCchHHHHHHHhhCCCCHHHHHhhcCCChhHHHHHHHHHHHHHhhcC
Q 043012 74 CLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIP 121 (151)
Q Consensus 74 ~~~~~l~~~v~~Wa~G~~f~eil~~t~l~EGdiVR~~rRl~elLrQl~ 121 (151)
.+.+.--.++...+.|.|..||-+..+++++.+=..++|...-|+.-.
T Consensus 27 ~Lt~~e~~vl~l~~~g~s~~eIA~~l~is~~tV~~~l~r~~~kL~~~~ 74 (95)
T 3c57_A 27 GLTDQERTLLGLLSEGLTNKQIADRMFLAEKTVKNYVSRLLAKLGMER 74 (95)
T ss_dssp CCCHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHHHHHTCCC
T ss_pred cCCHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHcCCC
Confidence 455666777777799999999999999999999999999988887643
No 32
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=66.87 E-value=12 Score=22.48 Aligned_cols=43 Identities=9% Similarity=0.118 Sum_probs=33.9
Q ss_pred chHHHHHHHhhCCCCHHHHHhhcCCChhHHHHHHHHHHHHHhh
Q 043012 77 SQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQ 119 (151)
Q Consensus 77 ~~l~~~v~~Wa~G~~f~eil~~t~l~EGdiVR~~rRl~elLrQ 119 (151)
+.--.+++.+..|.|..+|.+..+++++.+=+.++|...-|+.
T Consensus 19 ~~e~~vl~l~~~g~s~~eIA~~l~is~~tV~~~~~r~~~kl~~ 61 (79)
T 1x3u_A 19 ERERQVLSAVVAGLPNKSIAYDLDISPRTVEVHRANVMAKMKA 61 (79)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHTTSCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHcC
Confidence 3444455556899999999999999999998888887766653
No 33
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=65.84 E-value=26 Score=23.21 Aligned_cols=52 Identities=8% Similarity=-0.022 Sum_probs=36.8
Q ss_pred HHHHHHHc-CCCCCCCCCchHHHHHHHhhCCCCHHHHHhhcCCChhHHHHHHHHHHHH
Q 043012 60 FLELQEKH-GVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDL 116 (151)
Q Consensus 60 l~~~~~~~-~l~~~~~~~~~l~~~v~~Wa~G~~f~eil~~t~l~EGdiVR~~rRl~el 116 (151)
+......+ |+..+ .+.-+.+-|..|.+..+|.+..+++.+.+-|.+++|++-
T Consensus 25 ~~~~l~~~~~lt~~-----~~~iL~~l~~~~~~~~~la~~l~~~~~tvs~~l~~Le~~ 77 (144)
T 3f3x_A 25 FNNRLGKLMNLSYL-----DFSILKATSEEPRSMVYLANRYFVTQSAITAAVDKLEAK 77 (144)
T ss_dssp HHHHHHHHHSCCHH-----HHHHHHHHHHSCEEHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCCCHH-----HHHHHHHHHHCCCCHHHHHHHHCCChhHHHHHHHHHHHC
Confidence 33444455 76532 233333445555599999999999999999999999985
No 34
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=65.39 E-value=9.9 Score=25.21 Aligned_cols=53 Identities=17% Similarity=0.141 Sum_probs=36.2
Q ss_pred HHHHHHHcCCCCCCCCCchHHHHHHHhh-CCCCHHHHHhhcCCChhHHHHHHHHHHH
Q 043012 60 FLELQEKHGVEIPCCLDSQFSGMVEAWA-SGLTWREMMMDCALDDGDLARLLRRTID 115 (151)
Q Consensus 60 l~~~~~~~~l~~~~~~~~~l~~~v~~Wa-~G~~f~eil~~t~l~EGdiVR~~rRl~e 115 (151)
+......+|+..+ .+.++..++.-- .|.+..+|.+..+++.+.+-|.+++|++
T Consensus 20 ~~~~~~~~~lt~~---~~~vL~~l~~~~~~~~t~~ela~~l~~~~~tvs~~l~~Le~ 73 (139)
T 3eco_A 20 ADQKLEQFDITNE---QGHTLGYLYAHQQDGLTQNDIAKALQRTGPTVSNLLRNLER 73 (139)
T ss_dssp HHHHHGGGTCCHH---HHHHHHHHHHSTTTCEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHH---HHHHHHHHHhcCCCCcCHHHHHHHhCCCcccHHHHHHHHHH
Confidence 3334445666522 133333333322 3789999999999999999999999988
No 35
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=65.17 E-value=19 Score=21.46 Aligned_cols=47 Identities=9% Similarity=0.064 Sum_probs=37.0
Q ss_pred CCchHHHHHH-Hhh----CCCCHHHHHhhcCCChhHHHHHHHHHHHHHh-hcC
Q 043012 75 LDSQFSGMVE-AWA----SGLTWREMMMDCALDDGDLARLLRRTIDLLA-QIP 121 (151)
Q Consensus 75 ~~~~l~~~v~-~Wa----~G~~f~eil~~t~l~EGdiVR~~rRl~elLr-Ql~ 121 (151)
+++.--.++. .+- .|.|+.||-+..+++++.+=+.+.|...-|+ +..
T Consensus 11 L~~~er~il~l~~~l~~~~~~s~~eIA~~l~is~~tV~~~~~ra~~kLr~~~~ 63 (73)
T 1ku3_A 11 LSEREAMVLKMRKGLIDGREHTLEEVGAYFGVTRERIRQIENKALRKLKYHES 63 (73)
T ss_dssp SCHHHHHHHHHHHTTTTSSCCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHhcccCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhhHh
Confidence 4444445553 333 8999999999999999999999999999998 543
No 36
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=62.90 E-value=30 Score=22.88 Aligned_cols=55 Identities=15% Similarity=0.117 Sum_probs=35.2
Q ss_pred HHHHHHHHHHH--cCCCCCCCCCchHHHHHHHhh-CCCCHHHHHhhcCCChhHHHHHHHHHHH
Q 043012 56 HRSSFLELQEK--HGVEIPCCLDSQFSGMVEAWA-SGLTWREMMMDCALDDGDLARLLRRTID 115 (151)
Q Consensus 56 ~~~~l~~~~~~--~~l~~~~~~~~~l~~~v~~Wa-~G~~f~eil~~t~l~EGdiVR~~rRl~e 115 (151)
+...+...... +|+..+ .+.+.. +-|. .|.+..+|.+..++..+.+-|.+.||++
T Consensus 20 ~~~~~~~~l~~~~~~lt~~---~~~vL~--~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~L~~ 77 (142)
T 3ech_A 20 VRTRIQSELDCQRLDLTPP---DVHVLK--LIDEQRGLNLQDLGRQMCRDKALITRKIRELEG 77 (142)
T ss_dssp HHHHHHHHHHHTTCCCCHH---HHHHHH--HHHHTTTCCHHHHHHHHC---CHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccCCCCHH---HHHHHH--HHHhCCCcCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 33445555555 555422 123333 3444 4799999999999999999999999987
No 37
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=62.61 E-value=31 Score=22.91 Aligned_cols=30 Identities=20% Similarity=0.081 Sum_probs=27.2
Q ss_pred hCCCCHHHHHhhcCCChhHHHHHHHHHHHH
Q 043012 87 ASGLTWREMMMDCALDDGDLARLLRRTIDL 116 (151)
Q Consensus 87 a~G~~f~eil~~t~l~EGdiVR~~rRl~el 116 (151)
..+.+..+|.+..++..+.+-|.+++|++-
T Consensus 54 ~~~~t~~ela~~l~~~~~tvs~~l~~Le~~ 83 (150)
T 2rdp_A 54 EGDLTVGELSNKMYLACSTTTDLVDRMERN 83 (150)
T ss_dssp HCSBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHCCCchhHHHHHHHHHHC
Confidence 356899999999999999999999999873
No 38
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=62.39 E-value=17 Score=24.33 Aligned_cols=68 Identities=10% Similarity=0.132 Sum_probs=39.7
Q ss_pred hHHHHHHHHHHH-HHHHHHHHHHcCCCCCCCCCchHHHHHHHhh-CCCCHHHHHhhcCCChhHHHHHHHHHHH
Q 043012 45 TVINVINVLDEH-RSSFLELQEKHGVEIPCCLDSQFSGMVEAWA-SGLTWREMMMDCALDDGDLARLLRRTID 115 (151)
Q Consensus 45 ~l~~~~~~l~~~-~~~l~~~~~~~~l~~~~~~~~~l~~~v~~Wa-~G~~f~eil~~t~l~EGdiVR~~rRl~e 115 (151)
.+...+..+... ...+......+|+..+ .+.++..++... .|.+..+|.+...+..+.+-|.++||++
T Consensus 14 ~~~~~l~~~~~~~~~~~~~~~~~~glt~~---q~~vL~~l~~~~~~~~t~~eLa~~l~~~~~~vs~~l~~L~~ 83 (148)
T 3jw4_A 14 PYSYLIRSIGMKLKTSADARLAELGLNSQ---QGRMIGYIYENQESGIIQKDLAQFFGRRGASITSMLQGLEK 83 (148)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHTTCCHH---HHHHHHHHHHHTTTCCCHHHHHHC------CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCHH---HHHHHHHHHhCCCCCCCHHHHHHHHCCChhHHHHHHHHHHH
Confidence 344444444332 2334555566777532 234555555543 5899999999999999999999999987
No 39
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=62.37 E-value=21 Score=24.54 Aligned_cols=69 Identities=10% Similarity=0.051 Sum_probs=40.0
Q ss_pred hhHHHHHHHHHH-HHHHHHHHHHHcCCCCCCCCCchHHHHHHHh-hCCCCHHHHHhhcCCChhHHHHHHHHHHH
Q 043012 44 TTVINVINVLDE-HRSSFLELQEKHGVEIPCCLDSQFSGMVEAW-ASGLTWREMMMDCALDDGDLARLLRRTID 115 (151)
Q Consensus 44 ~~l~~~~~~l~~-~~~~l~~~~~~~~l~~~~~~~~~l~~~v~~W-a~G~~f~eil~~t~l~EGdiVR~~rRl~e 115 (151)
..+...+..+.. +...+......+|+..+ .+.++..++.- -.|.+..+|.+...+..+.+-|.+.||++
T Consensus 18 ~~~~~~l~~~~~~~~~~~~~~~~~~glt~~---q~~vL~~l~~~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~ 88 (168)
T 3u2r_A 18 QEAYLQLWRTYDRMKAIEEEIFSQFELSAQ---QYNTLRLLRSVHPEGMATLQIADRLISRAPDITRLIDRLDD 88 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTTCCHH---HHHHHHHHHHHTTSCEEHHHHHHHC---CTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCCHH---HHHHHHHHHhcCCCCcCHHHHHHHHCCChhhHHHHHHHHHH
Confidence 334443433333 23334444455666522 13333333333 24799999999999999999999999987
No 40
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=61.76 E-value=15 Score=24.35 Aligned_cols=53 Identities=19% Similarity=0.309 Sum_probs=37.2
Q ss_pred HHHHHHHcCCCCCCCCCchHHHHHHHhhCCCCHHHHHhhcCCChhHHHHHHHHHHH
Q 043012 60 FLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTID 115 (151)
Q Consensus 60 l~~~~~~~~l~~~~~~~~~l~~~v~~Wa~G~~f~eil~~t~l~EGdiVR~~rRl~e 115 (151)
+......+|+..+ ...++.+++.-..+.|..+|.+..+++.+.+-|.+.+|.+
T Consensus 15 ~~~~~~~~gl~~~---~~~il~~L~~~~~~~t~~ela~~l~~~~stvs~~l~~L~~ 67 (152)
T 1ku9_A 15 FSELAKIHGLNKS---VGAVYAILYLSDKPLTISDIMEELKISKGNVSMSLKKLEE 67 (152)
T ss_dssp HHHHHHHTTCCHH---HHHHHHHHHHCSSCEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCChh---HHHHHHHHHHcCCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4445566776532 1234444422235689999999999999999999999987
No 41
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=61.43 E-value=28 Score=23.09 Aligned_cols=47 Identities=17% Similarity=0.218 Sum_probs=38.2
Q ss_pred CCchHHHHHHH-hhCCCCHHHHHhhcCCChhHHHHHHHHHHHHHhhcC
Q 043012 75 LDSQFSGMVEA-WASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIP 121 (151)
Q Consensus 75 ~~~~l~~~v~~-Wa~G~~f~eil~~t~l~EGdiVR~~rRl~elLrQl~ 121 (151)
+.+.--.++.. ...|.|..||.+..+++++.+=+.+.|.-.-|++.-
T Consensus 26 L~~~~r~vl~l~~~~g~s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~l 73 (113)
T 1xsv_A 26 LTNKQRNYLELFYLEDYSLSEIADTFNVSRQAVYDNIRRTGDLVEDYE 73 (113)
T ss_dssp SCHHHHHHHHHHHTSCCCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 44555566644 589999999999999999999999999888888753
No 42
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=61.19 E-value=9.6 Score=25.49 Aligned_cols=37 Identities=14% Similarity=0.138 Sum_probs=30.2
Q ss_pred hHHHHHHHhhCCCCHHHHHhhcCCChhHHHHHHHHHHH
Q 043012 78 QFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTID 115 (151)
Q Consensus 78 ~l~~~v~~Wa~G~~f~eil~~t~l~EGdiVR~~rRl~e 115 (151)
.++..++.- .|.+..+|.+..+++.+.+-|.+.+|.+
T Consensus 41 ~iL~~l~~~-~~~t~~eLa~~l~~~~~~vs~~l~~L~~ 77 (143)
T 3oop_A 41 SVLEGIEAN-EPISQKEIALWTKKDTPTVNRIVDVLLR 77 (143)
T ss_dssp HHHHHHHHH-SSEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHc-CCcCHHHHHHHHCCCHhhHHHHHHHHHH
Confidence 344444333 6789999999999999999999999987
No 43
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=61.05 E-value=13 Score=23.44 Aligned_cols=46 Identities=11% Similarity=0.081 Sum_probs=38.3
Q ss_pred CCCchHHHHHHHhhCCCCHHHHHhhcCCChhHHHHHHHHHHHHHhh
Q 043012 74 CLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQ 119 (151)
Q Consensus 74 ~~~~~l~~~v~~Wa~G~~f~eil~~t~l~EGdiVR~~rRl~elLrQ 119 (151)
.+.+.-..++...+.|.|..||.+..+++++.+=..+.|...-|+.
T Consensus 29 ~Lt~~e~~vl~l~~~g~s~~eIA~~l~is~~tV~~~l~r~~~kL~~ 74 (91)
T 2rnj_A 29 MLTEREMEILLLIAKGYSNQEIASASHITIKTVKTHVSNILSKLEV 74 (91)
T ss_dssp GCCSHHHHHHHHHHTTCCTTHHHHHHTCCHHHHHHHHHHHHHHTTC
T ss_pred cCCHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHCC
Confidence 4566677777777999999999999999999999888887766654
No 44
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=60.42 E-value=12 Score=25.17 Aligned_cols=69 Identities=10% Similarity=0.104 Sum_probs=42.1
Q ss_pred hhHHHHHHHHHHHH-HHHHHHHHHcCCCCCCCCCchHHHHHHHhhCCCCHHHHHhhcCCChhHHHHHHHHHHH
Q 043012 44 TTVINVINVLDEHR-SSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTID 115 (151)
Q Consensus 44 ~~l~~~~~~l~~~~-~~l~~~~~~~~l~~~~~~~~~l~~~v~~Wa~G~~f~eil~~t~l~EGdiVR~~rRl~e 115 (151)
..+...+..+.... ..+......+|+..+ .+.++..++.--.+.+..+|.+...+..+.+-|.+.+|++
T Consensus 11 ~~l~~~l~~~~~~~~~~~~~~l~~~glt~~---q~~vL~~l~~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le~ 80 (150)
T 3fm5_A 11 DDIGFLLSRVGGMVLGAVNKALVPTGLRVR---SYSVLVLACEQAEGVNQRGVAATMGLDPSQIVGLVDELEE 80 (150)
T ss_dssp GCHHHHHHHHHHHHHHHHHHHHGGGTCCHH---HHHHHHHHHHSTTCCCSHHHHHHHTCCHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHcCCCHH---HHHHHHHHHhCCCCcCHHHHHHHHCCCHhHHHHHHHHHHH
Confidence 33444444444333 233444456776522 1333333332223469999999999999999999999986
No 45
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=60.34 E-value=32 Score=23.01 Aligned_cols=50 Identities=12% Similarity=0.172 Sum_probs=35.5
Q ss_pred HHHHHHcCCCCCCCCCchHHHHHHHhhC-CCCHHHHHhhcCCChhHHHHHHHHHHH
Q 043012 61 LELQEKHGVEIPCCLDSQFSGMVEAWAS-GLTWREMMMDCALDDGDLARLLRRTID 115 (151)
Q Consensus 61 ~~~~~~~~l~~~~~~~~~l~~~v~~Wa~-G~~f~eil~~t~l~EGdiVR~~rRl~e 115 (151)
......+|+.. ..+.-+.+-|.. |.+..+|.+...++.+.+-|.+++|++
T Consensus 31 ~~~~~~~~lt~-----~~~~iL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~ 81 (154)
T 2qww_A 31 DQNAASLGLTI-----QQLAMINVIYSTPGISVADLTKRLIITGSSAAANVDGLIS 81 (154)
T ss_dssp HHHHHHHTCCH-----HHHHHHHHHHHSTTEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCH-----HHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34444567642 122233344544 589999999999999999999999988
No 46
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=59.89 E-value=43 Score=23.99 Aligned_cols=67 Identities=10% Similarity=0.053 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCchHHHHHHHhh--C--CCCHHHHHhhcCCChhHHHHHHHHHHHHHh
Q 043012 52 VLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWA--S--GLTWREMMMDCALDDGDLARLLRRTIDLLA 118 (151)
Q Consensus 52 ~l~~~~~~l~~~~~~~~l~~~~~~~~~l~~~v~~Wa--~--G~~f~eil~~t~l~EGdiVR~~rRl~elLr 118 (151)
.+.+.+.+|.+...+.++-.-..+..=.+.++|.-+ . ..+..+|.+.+++.+++|=++.+.+.+.|.
T Consensus 124 ~v~~~A~~i~~~~~~~~~~~gr~P~~iAaAaly~A~~~~~~~~t~~ei~~~~~vs~~ti~~~~~~l~~~l~ 194 (200)
T 1ais_B 124 KVRRRAIEILDEAYKRGLTSGKSPAGLVAAALYIASLLEGEKRTQREVAEVARVTEVTVRNRYKELVEKLK 194 (200)
T ss_dssp HHHHHHHHHHHHHHHTTCCTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHcC
Confidence 456777777777777766544444333344556554 2 468999999999999999999888888775
No 47
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=59.37 E-value=38 Score=22.89 Aligned_cols=69 Identities=16% Similarity=0.141 Sum_probs=45.6
Q ss_pred chhHHHHHHHHHHHHHH-HHHHHHHcCCCCCCCCCchHHHHHHHhhCCCCHHHHHhhcCCChhHHHHHHHHHHH
Q 043012 43 STTVINVINVLDEHRSS-FLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTID 115 (151)
Q Consensus 43 ~~~l~~~~~~l~~~~~~-l~~~~~~~~l~~~~~~~~~l~~~v~~Wa~G~~f~eil~~t~l~EGdiVR~~rRl~e 115 (151)
...+...+..+.....+ +......+|+..+ .+.+...++. ..|.+..+|.+...+..+.+-|.+.+|++
T Consensus 21 ~~~l~~~l~~~~~~~~~~~~~~l~~~~lt~~---q~~vL~~l~~-~~~~t~~eLa~~l~~~~~tvs~~l~~Le~ 90 (159)
T 3s2w_A 21 KEFIGKAISYLYRYGQIYIGKKIEPYGIGSG---QFPFLMRLYR-EDGINQESLSDYLKIDKGTTARAIQKLVD 90 (159)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHGGGTCCTT---THHHHHHHHH-SCSEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHcCCCHH---HHHHHHHHHH-CCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34455555555443333 3444456777643 2344444433 35689999999999999999999999987
No 48
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=59.26 E-value=37 Score=23.33 Aligned_cols=38 Identities=5% Similarity=0.092 Sum_probs=30.2
Q ss_pred hHHHHHHHhhCCCCHHHHHhhcCCChhHHHHHHHHHHHH
Q 043012 78 QFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDL 116 (151)
Q Consensus 78 ~l~~~v~~Wa~G~~f~eil~~t~l~EGdiVR~~rRl~el 116 (151)
.++..++. ..|.+..+|.+..++..+.+-|.+++|++.
T Consensus 49 ~iL~~L~~-~~~~t~~eLa~~l~is~~tvs~~l~~Le~~ 86 (168)
T 2nyx_A 49 RTLVILSN-HGPINLATLATLLGVQPSATGRMVDRLVGA 86 (168)
T ss_dssp HHHHHHHH-HCSEEHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHH-cCCCCHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 33444433 357999999999999999999999999873
No 49
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=59.09 E-value=15 Score=28.01 Aligned_cols=40 Identities=13% Similarity=0.297 Sum_probs=33.6
Q ss_pred chHHHHHHHhhC---CCCHHHHHhhcCCChhHHHHHHHHHHHH
Q 043012 77 SQFSGMVEAWAS---GLTWREMMMDCALDDGDLARLLRRTIDL 116 (151)
Q Consensus 77 ~~l~~~v~~Wa~---G~~f~eil~~t~l~EGdiVR~~rRl~el 116 (151)
+.+.-+.+-|-+ |.+-.+|.+...+..|++.|.+.||++.
T Consensus 35 ~q~~vL~~L~~~~~~~~~~~el~~~l~~~~~t~t~~l~rLe~~ 77 (250)
T 1p4x_A 35 KEFILLTYLFHQQENTLPFKKIVSDLCYKQSDLVQHIKVLVKH 77 (250)
T ss_dssp HHHHHHHHHHSCSCSEEEHHHHHHHSSSCGGGTHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCCCCcCHHHHHHHHCCCHhhHHHHHHHHHHC
Confidence 345556677864 6899999999999999999999999874
No 50
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=58.94 E-value=20 Score=23.13 Aligned_cols=35 Identities=20% Similarity=0.265 Sum_probs=29.5
Q ss_pred HHHHHhhCCCCHHHHHhhcCCChhHHHHHHHHHHH
Q 043012 81 GMVEAWASGLTWREMMMDCALDDGDLARLLRRTID 115 (151)
Q Consensus 81 ~~v~~Wa~G~~f~eil~~t~l~EGdiVR~~rRl~e 115 (151)
.++..+..|.|..+|.+..++...++-||++|..+
T Consensus 25 ~i~~~~~~g~s~~~ia~~lgis~~Tv~~w~~~~~~ 59 (128)
T 1pdn_C 25 KIVEMAADGIRPCVISRQLRVSHGCVSKILNRYQE 59 (128)
T ss_dssp HHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHh
Confidence 44455678999999999999999999999999765
No 51
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=58.68 E-value=21 Score=22.22 Aligned_cols=34 Identities=9% Similarity=0.038 Sum_probs=31.1
Q ss_pred CCCCHHHHHhhcCCChhHHHHHHHHHHHHHhhcC
Q 043012 88 SGLTWREMMMDCALDDGDLARLLRRTIDLLAQIP 121 (151)
Q Consensus 88 ~G~~f~eil~~t~l~EGdiVR~~rRl~elLrQl~ 121 (151)
.|.|+.||-+..+++++.+=..+.|...-|++.-
T Consensus 37 ~~~s~~EIA~~lgis~~tV~~~~~ra~~kLr~~l 70 (87)
T 1tty_A 37 KPKTLEEVGQYFNVTRERIRQIEVKALRKLRHPS 70 (87)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHHHHHBTTB
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999988888744
No 52
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=58.59 E-value=21 Score=23.62 Aligned_cols=51 Identities=10% Similarity=0.029 Sum_probs=35.7
Q ss_pred HHHHHHcCCCCCCCCCchHHHHHHHhhC-CCCHHHHHhhcCCChhHHHHHHHHHHHH
Q 043012 61 LELQEKHGVEIPCCLDSQFSGMVEAWAS-GLTWREMMMDCALDDGDLARLLRRTIDL 116 (151)
Q Consensus 61 ~~~~~~~~l~~~~~~~~~l~~~v~~Wa~-G~~f~eil~~t~l~EGdiVR~~rRl~el 116 (151)
......+|+..+ ...++. +-|.. |.+..+|.+...++.+.+-|.+++|.+-
T Consensus 19 ~~~~~~~~lt~~---~~~iL~--~l~~~~~~t~~~la~~l~~s~~~vs~~l~~Le~~ 70 (144)
T 1lj9_A 19 NIEFKELSLTRG---QYLYLV--RVCENPGIIQEKIAELIKVDRTTAARAIKRLEEQ 70 (144)
T ss_dssp HHHTGGGTCTTT---HHHHHH--HHHHSTTEEHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCHH---HHHHHH--HHHHCcCcCHHHHHHHHCCCHhHHHHHHHHHHHC
Confidence 334445666422 123333 34544 5899999999999999999999999983
No 53
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=58.19 E-value=20 Score=23.51 Aligned_cols=33 Identities=24% Similarity=0.222 Sum_probs=28.6
Q ss_pred HHhh-CCCCHHHHHhhcCCChhHHHHHHHHHHHH
Q 043012 84 EAWA-SGLTWREMMMDCALDDGDLARLLRRTIDL 116 (151)
Q Consensus 84 ~~Wa-~G~~f~eil~~t~l~EGdiVR~~rRl~el 116 (151)
+-|. .|.+..+|.+..++..+.+-|.+++|++-
T Consensus 42 ~l~~~~~~~~~~la~~l~~~~~tvs~~l~~L~~~ 75 (138)
T 1jgs_A 42 SIRCAACITPVELKKVLSVDLGALTRMLDRLVCK 75 (138)
T ss_dssp HHHHHSSBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred HHHhcCCCCHHHHHHHHCCChHHHHHHHHHHHHC
Confidence 4454 56899999999999999999999999884
No 54
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=57.39 E-value=34 Score=22.81 Aligned_cols=52 Identities=17% Similarity=0.144 Sum_probs=36.2
Q ss_pred HHHHHHcCCCCCCCCCchHHHHHHHhhCCCCHHHHHhhcCCChhHHHHHHHHHHHH
Q 043012 61 LELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDL 116 (151)
Q Consensus 61 ~~~~~~~~l~~~~~~~~~l~~~v~~Wa~G~~f~eil~~t~l~EGdiVR~~rRl~el 116 (151)
......+++..+ ...++..++. ..|.+..+|.+..++..+.+-|.+++|++.
T Consensus 27 ~~~~~~~~l~~~---~~~iL~~l~~-~~~~t~~ela~~l~~s~~tvs~~l~~Le~~ 78 (155)
T 1s3j_A 27 LESMEKQGVTPA---QLFVLASLKK-HGSLKVSEIAERMEVKPSAVTLMADRLEQK 78 (155)
T ss_dssp HHHHHHTTCCHH---HHHHHHHHHH-HSEEEHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred HHHHhhcCCCHH---HHHHHHHHHH-cCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 333344666522 2344444433 356899999999999999999999999874
No 55
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=57.26 E-value=32 Score=22.89 Aligned_cols=47 Identities=15% Similarity=0.235 Sum_probs=38.3
Q ss_pred CCchHHHHHHH-hhCCCCHHHHHhhcCCChhHHHHHHHHHHHHHhhcC
Q 043012 75 LDSQFSGMVEA-WASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIP 121 (151)
Q Consensus 75 ~~~~l~~~v~~-Wa~G~~f~eil~~t~l~EGdiVR~~rRl~elLrQl~ 121 (151)
+++.--.++.. +..|.|..||.+..+++++.+=+.+.|...-|++.-
T Consensus 23 L~~~~r~vl~l~y~~g~s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~l 70 (113)
T 1s7o_A 23 LTDKQMNYIELYYADDYSLAEIADEFGVSRQAVYDNIKRTEKILETYE 70 (113)
T ss_dssp SCHHHHHHHHHHHHTCCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 44555555544 589999999999999999999999999888887753
No 56
>3cqb_A Probable protease HTPX homolog; heat shock protein HTPX domain, PSI-2, protein structure INI structural genomics; HET: MSE; 1.86A {Vibrio parahaemolyticus rimd 2210633}
Probab=56.81 E-value=1.2 Score=29.79 Aligned_cols=20 Identities=20% Similarity=0.287 Sum_probs=17.1
Q ss_pred ccccCCCCCCCHHHHHHHHH
Q 043012 2 VLRNKILLDLKPAQLAAVCA 21 (151)
Q Consensus 2 ~L~~g~f~~L~p~elAAllS 21 (151)
++..|+++.|+++||+|+++
T Consensus 69 ~v~~gLl~~l~~~El~aVla 88 (107)
T 3cqb_A 69 AVSTGLLHNMTRDEAEAVLA 88 (107)
T ss_dssp EEEHHHHHHSCHHHHHHHHH
T ss_pred EEcHHHHhhCCHHHHHHHHH
Confidence 45678888999999999987
No 57
>1hsj_A Fusion protein consisting of staphylococcus accessary regulator protein R and maltose...; novel fold for DNA binding; HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28 c.94.1.1
Probab=56.81 E-value=13 Score=30.40 Aligned_cols=38 Identities=13% Similarity=0.106 Sum_probs=32.6
Q ss_pred hHHHHHHHhhC---CCCHHHHHhhcCCChhHHHHHHHHHHH
Q 043012 78 QFSGMVEAWAS---GLTWREMMMDCALDDGDLARLLRRTID 115 (151)
Q Consensus 78 ~l~~~v~~Wa~---G~~f~eil~~t~l~EGdiVR~~rRl~e 115 (151)
.+.-+.+-|-+ |.+..+|.+...+..+++.|.+.||++
T Consensus 406 q~~vl~~l~~~~~~~~~~~~l~~~~~~~~~~~t~~~~~le~ 446 (487)
T 1hsj_A 406 EIYILNHILRSESNEISSKEIAKCSEFKPYYLTKALQKLKD 446 (487)
T ss_dssp HHHHHHHHHTCSCSEEEHHHHHHSSCCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCCCcCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 45555677876 589999999999999999999999987
No 58
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=56.78 E-value=17 Score=22.93 Aligned_cols=40 Identities=15% Similarity=0.263 Sum_probs=28.8
Q ss_pred CCchHH-HHHHHhh-C-CCCHHHHHhhcCCChhHHHHHHHHHH
Q 043012 75 LDSQFS-GMVEAWA-S-GLTWREMMMDCALDDGDLARLLRRTI 114 (151)
Q Consensus 75 ~~~~l~-~~v~~Wa-~-G~~f~eil~~t~l~EGdiVR~~rRl~ 114 (151)
+++.+- .+|..+. . |.|..+|+...++..+.|-||+++..
T Consensus 6 ys~e~k~~~v~~~~~~~g~s~~~ia~~~gIs~~tl~rW~~~~~ 48 (97)
T 2jn6_A 6 YSEEFKRDAVALYENSDGASLQQIANDLGINRVTLKNWIIKYG 48 (97)
T ss_dssp CCHHHHHHHHHHHTTGGGSCHHHHHHHHTSCHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHcCCChHHHHHHHHCcCHHHHHHHHHHHh
Confidence 444444 3343443 4 89999999999999999999988754
No 59
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=56.75 E-value=39 Score=22.65 Aligned_cols=54 Identities=7% Similarity=0.214 Sum_probs=37.4
Q ss_pred HHHHHHHHHcCCCCCCCCCchHHHHHHHhh-CCCCHHHHHhhcCCChhHHHHHHHHHHHH
Q 043012 58 SSFLELQEKHGVEIPCCLDSQFSGMVEAWA-SGLTWREMMMDCALDDGDLARLLRRTIDL 116 (151)
Q Consensus 58 ~~l~~~~~~~~l~~~~~~~~~l~~~v~~Wa-~G~~f~eil~~t~l~EGdiVR~~rRl~el 116 (151)
..+......+|+..+ .+.-+.+-|. .|.+..+|.+..++..+.+-|.+++|++-
T Consensus 30 ~~~~~~l~~~~lt~~-----~~~iL~~l~~~~~~t~~ela~~l~i~~~tvs~~l~~Le~~ 84 (155)
T 3cdh_A 30 AQFHDHIRAQGLRVP-----EWRVLACLVDNDAMMITRLAKLSLMEQSRMTRIVDQMDAR 84 (155)
T ss_dssp HHHHHHHHHTTCCHH-----HHHHHHHHSSCSCBCHHHHHHHTTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHH-----HHHHHHHHHHCCCcCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 334444456776422 2222334454 45899999999999999999999999873
No 60
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=55.80 E-value=21 Score=23.99 Aligned_cols=51 Identities=12% Similarity=0.076 Sum_probs=36.3
Q ss_pred HHHHHHcCCCCCCCCCchHHHHHHHhhCCCCHHHHHhhcCCChhHHHHHHHHHHH
Q 043012 61 LELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTID 115 (151)
Q Consensus 61 ~~~~~~~~l~~~~~~~~~l~~~v~~Wa~G~~f~eil~~t~l~EGdiVR~~rRl~e 115 (151)
......+|+..+ .+.++..++. ..|.+..+|.+...+..+.+-|.+.+|++
T Consensus 31 ~~~~~~~~lt~~---q~~iL~~l~~-~~~~~~~eLa~~l~~~~~~vs~~l~~L~~ 81 (149)
T 4hbl_A 31 EKKLKQFGITYS---QYLVMLTLWE-ENPQTLNSIGRHLDLSSNTLTPMLKRLEQ 81 (149)
T ss_dssp HHHHHHTTCCHH---HHHHHHHHHH-SSSEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHH---HHHHHHHHHH-CCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 334446776532 2334444433 36689999999999999999999999986
No 61
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=54.69 E-value=33 Score=24.30 Aligned_cols=65 Identities=11% Similarity=-0.029 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCCCchHHH-HHHHhh---CCCCHHHHHhhcCCChhHHHHHHHHHHH
Q 043012 47 INVINVLDEHRSSFLELQEKHGVEIPCCLDSQFSG-MVEAWA---SGLTWREMMMDCALDDGDLARLLRRTID 115 (151)
Q Consensus 47 ~~~~~~l~~~~~~l~~~~~~~~l~~~~~~~~~l~~-~v~~Wa---~G~~f~eil~~t~l~EGdiVR~~rRl~e 115 (151)
.+.+..+..+...+.......--+ +.+.-.. +.+-|. .|.+..+|.+...+..+.+-|.+++|.+
T Consensus 15 ~~~~~~l~~~~~~~~~~~~~~~~~----lt~~q~~vL~~L~~~~~~~~t~~eLa~~l~is~~tvs~~l~~Le~ 83 (189)
T 3nqo_A 15 NQTYATLFTLTNKIQIEGDKYFGI----LTSRQYMTILSILHLPEEETTLNNIARKMGTSKQNINRLVANLEK 83 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCS----SCHHHHHHHHHHHHSCGGGCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcc----CCHHHHHHHHHHHhccCCCcCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 344445555555554443332111 3333222 234453 4799999999999999999999999986
No 62
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=54.18 E-value=47 Score=22.34 Aligned_cols=68 Identities=16% Similarity=0.259 Sum_probs=43.3
Q ss_pred hHHHHHHHHHHHH-HHHHHHH-HHcCCCCCCCCCchHHHHHHHhhCCCCHHHHHhhcCCChhHHHHHHHHHHHH
Q 043012 45 TVINVINVLDEHR-SSFLELQ-EKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDL 116 (151)
Q Consensus 45 ~l~~~~~~l~~~~-~~l~~~~-~~~~l~~~~~~~~~l~~~v~~Wa~G~~f~eil~~t~l~EGdiVR~~rRl~el 116 (151)
.+...+..+.... ..+.... ..+|+..+ .+.++..++. ..|.+..+|.+..++..+.+-|.+++|++-
T Consensus 21 ~l~~~l~~~~~~~~~~~~~~l~~~~~lt~~---~~~iL~~l~~-~~~~t~~ela~~l~is~~tvs~~l~~Le~~ 90 (162)
T 2fa5_A 21 FLPYRLSVLSNRISGNIAKVYGDRYGMAIP---EWRVITILAL-YPGSSASEVSDRTAMDKVAVSRAVARLLER 90 (162)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHCCCHH---HHHHHHHHHH-STTCCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCCCHH---HHHHHHHHHh-CCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 3444444443332 2233333 56776532 2334444433 456999999999999999999999999885
No 63
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=54.02 E-value=22 Score=23.26 Aligned_cols=32 Identities=28% Similarity=0.401 Sum_probs=27.9
Q ss_pred HHhh-CCCCHHHHHhhcCCChhHHHHHHHHHHH
Q 043012 84 EAWA-SGLTWREMMMDCALDDGDLARLLRRTID 115 (151)
Q Consensus 84 ~~Wa-~G~~f~eil~~t~l~EGdiVR~~rRl~e 115 (151)
+-|. .|.+..+|.+..+++.+.+-|.+++|.+
T Consensus 37 ~l~~~~~~~~~ela~~l~~s~~tvs~~l~~L~~ 69 (138)
T 3bpv_A 37 RIHREPGIKQDELATFFHVDKGTIARTLRRLEE 69 (138)
T ss_dssp HHHHSTTCBHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4444 5689999999999999999999999987
No 64
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=52.54 E-value=26 Score=22.84 Aligned_cols=33 Identities=3% Similarity=0.064 Sum_probs=28.3
Q ss_pred HHhh-CCCCHHHHHhhcCCChhHHHHHHHHHHHH
Q 043012 84 EAWA-SGLTWREMMMDCALDDGDLARLLRRTIDL 116 (151)
Q Consensus 84 ~~Wa-~G~~f~eil~~t~l~EGdiVR~~rRl~el 116 (151)
+-|. .+.+..+|.+..+++.+.+-|.+++|.+.
T Consensus 41 ~l~~~~~~~~~ela~~l~~~~~tvs~~l~~L~~~ 74 (139)
T 3bja_A 41 VLAKSGKVSMSKLIENMGCVPSNMTTMIQRMKRD 74 (139)
T ss_dssp HHHHSCSEEHHHHHHHCSSCCTTHHHHHHHHHHT
T ss_pred HHHHcCCcCHHHHHHHHCCChhHHHHHHHHHHHC
Confidence 3354 45899999999999999999999999983
No 65
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=52.51 E-value=36 Score=22.11 Aligned_cols=30 Identities=17% Similarity=0.132 Sum_probs=27.3
Q ss_pred hhCCCCHHHHHhhc-CCChhHHHHHHHHHHH
Q 043012 86 WASGLTWREMMMDC-ALDDGDLARLLRRTID 115 (151)
Q Consensus 86 Wa~G~~f~eil~~t-~l~EGdiVR~~rRl~e 115 (151)
+-.+.++.+|.+.. +++.+.+-+.+++|++
T Consensus 32 ~~~~~~~~eLa~~l~~is~~tvs~~L~~Le~ 62 (112)
T 1z7u_A 32 FQGTKRNGELMRALDGITQRVLTDRLREMEK 62 (112)
T ss_dssp HHSCBCHHHHHHHSTTCCHHHHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHhccCCHHHHHHHHHHHHH
Confidence 34679999999999 9999999999999987
No 66
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=52.41 E-value=38 Score=23.13 Aligned_cols=65 Identities=6% Similarity=-0.052 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHH-HHHHHHHcCCCCCCCCCchHHHHHHHhhCCCCHHHHHhhcCCChhHHHHHHHHHHH
Q 043012 48 NVINVLDEHRSS-FLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTID 115 (151)
Q Consensus 48 ~~~~~l~~~~~~-l~~~~~~~~l~~~~~~~~~l~~~v~~Wa~G~~f~eil~~t~l~EGdiVR~~rRl~e 115 (151)
..+.++.+.+.+ +......+|+..+ .+.+...++.--.|.+-.+|.+...+..+.+.|.+.||++
T Consensus 7 ~~l~rl~r~~~~~~~~~l~~~gLt~~---q~~vL~~L~~~~~~~~~~eLa~~l~~~~~tvs~~v~~Le~ 72 (151)
T 4aik_A 7 SDLARLVRVWRALIDHRLKPLELTQT---HWVTLYNINRLPPEQSQIQLAKAIGIEQPSLVRTLDQLEE 72 (151)
T ss_dssp HHHHHHHHHHHHHHHHHTGGGCCCHH---HHHHHHHHHHSCTTSCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHH---HHHHHHHHHHcCCCCcHHHHHHHHCcCHHHHHHHHHHHHh
Confidence 334444444433 3333345666522 1233333333335577799999999999999999999987
No 67
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=52.25 E-value=27 Score=23.65 Aligned_cols=37 Identities=16% Similarity=0.238 Sum_probs=31.4
Q ss_pred HHHHHHhhCCCCHHHHHhhcCCChhHHHHHHHHHHHH
Q 043012 80 SGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDL 116 (151)
Q Consensus 80 ~~~v~~Wa~G~~f~eil~~t~l~EGdiVR~~rRl~el 116 (151)
..++..+..|.|..+|.+..++...+|-||++|-.+-
T Consensus 39 ~~iv~~~~~G~s~~~iA~~lgis~~TV~rw~~~~~~~ 75 (149)
T 1k78_A 39 QRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYET 75 (149)
T ss_dssp HHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 4455666799999999999999999999999997654
No 68
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=51.75 E-value=22 Score=22.29 Aligned_cols=28 Identities=14% Similarity=0.185 Sum_probs=26.2
Q ss_pred CCCHHHHHhhcCCChhH-HHHHHHHHHHH
Q 043012 89 GLTWREMMMDCALDDGD-LARLLRRTIDL 116 (151)
Q Consensus 89 G~~f~eil~~t~l~EGd-iVR~~rRl~el 116 (151)
|.+..+|.+..++..+. +-|.+++|++.
T Consensus 30 ~~t~~eLa~~l~is~~t~vs~~l~~Le~~ 58 (95)
T 2pg4_A 30 EPSLAEIVKASGVSEKTFFMGLKDRLIRA 58 (95)
T ss_dssp CCCHHHHHHHHCCCHHHHHTTHHHHHHHT
T ss_pred CCCHHHHHHHHCCCchHHHHHHHHHHHHC
Confidence 58999999999999999 99999999875
No 69
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=51.14 E-value=26 Score=23.88 Aligned_cols=54 Identities=13% Similarity=0.177 Sum_probs=38.7
Q ss_pred HHHHHHHHHcCCCCCCCCCchHHHHHHHhhCCCCHHHHHhhcCCChhHHHHHHHHHHH
Q 043012 58 SSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTID 115 (151)
Q Consensus 58 ~~l~~~~~~~~l~~~~~~~~~l~~~v~~Wa~G~~f~eil~~t~l~EGdiVR~~rRl~e 115 (151)
..+......+|+..+ .+.++..++. ..|.+..+|.+...+..+.+-|.+.+|++
T Consensus 40 ~~~~~~~~~~glt~~---q~~vL~~l~~-~~~~t~~eLa~~l~~~~~~vs~~l~~Le~ 93 (161)
T 3e6m_A 40 SELNQALASEKLPTP---KLRLLSSLSA-YGELTVGQLATLGVMEQSTTSRTVDQLVD 93 (161)
T ss_dssp HHHHHHHHHHTCCHH---HHHHHHHHHH-HSEEEHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHH---HHHHHHHHHh-CCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 334445566787532 2344444433 35799999999999999999999999987
No 70
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=51.12 E-value=21 Score=23.76 Aligned_cols=51 Identities=14% Similarity=0.213 Sum_probs=35.9
Q ss_pred HHHHHHHcCCCCCCCCCchHHHHHHHhh-CCCCHHHHHhhcCCChhHHHHHHHHHHH
Q 043012 60 FLELQEKHGVEIPCCLDSQFSGMVEAWA-SGLTWREMMMDCALDDGDLARLLRRTID 115 (151)
Q Consensus 60 l~~~~~~~~l~~~~~~~~~l~~~v~~Wa-~G~~f~eil~~t~l~EGdiVR~~rRl~e 115 (151)
+......+|+..+ .+.-+.+-|. .|.+..+|.+...+..+.+-|.+.+|++
T Consensus 25 ~~~~~~~~glt~~-----q~~vL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~L~~ 76 (140)
T 3hsr_A 25 YTNYLKEYDLTYT-----GYIVLMAIENDEKLNIKKLGERVFLDSGTLTPLLKKLEK 76 (140)
T ss_dssp HHHHHGGGTCCHH-----HHHHHHHSCTTCEEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHH-----HHHHHHHHHHcCCcCHHHHHHHHCCChhhHHHHHHHHHH
Confidence 3444445666532 2333334453 4589999999999999999999999987
No 71
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=51.00 E-value=31 Score=24.71 Aligned_cols=46 Identities=11% Similarity=0.151 Sum_probs=36.8
Q ss_pred CCchHHHHHH-HhhCCCCHHHHHhhcCCChhHHHHHHHHHHHHHhhc
Q 043012 75 LDSQFSGMVE-AWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQI 120 (151)
Q Consensus 75 ~~~~l~~~v~-~Wa~G~~f~eil~~t~l~EGdiVR~~rRl~elLrQl 120 (151)
+.+.--.++. .+..|.|+.||-+..+++++.+=+.+.|...-||+.
T Consensus 188 L~~~~r~vl~l~~~~g~s~~EIA~~lgis~~~V~~~~~ra~~~Lr~~ 234 (239)
T 1rp3_A 188 LPEREKLVIQLIFYEELPAKEVAKILETSVSRVSQLKAKALERLREM 234 (239)
T ss_dssp SCHHHHHHHHHHHTSCCCHHHHHHHTTSCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Confidence 4444445553 357999999999999999999999998888888763
No 72
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=50.72 E-value=32 Score=22.91 Aligned_cols=52 Identities=12% Similarity=0.109 Sum_probs=35.7
Q ss_pred HHHHHHcCCCCCCCCCchHHHHHHHhhCCCCHHHHHhhcCCChhHHHHHHHHHHHH
Q 043012 61 LELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDL 116 (151)
Q Consensus 61 ~~~~~~~~l~~~~~~~~~l~~~v~~Wa~G~~f~eil~~t~l~EGdiVR~~rRl~el 116 (151)
......+|+..+ .+.++..++. ..|.+..+|.+..++..+.+-|.+++|.+-
T Consensus 30 ~~~~~~~~lt~~---~~~iL~~l~~-~~~~t~~ela~~l~~~~~~vs~~l~~Le~~ 81 (152)
T 3bj6_A 30 ERGTLREGVTVG---QRAILEGLSL-TPGATAPQLGAALQMKRQYISRILQEVQRA 81 (152)
T ss_dssp HHHHHHTTCCHH---HHHHHHHHHH-STTEEHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCHH---HHHHHHHHHh-CCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 334455676422 2233333332 246899999999999999999999999873
No 73
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=50.52 E-value=18 Score=23.96 Aligned_cols=35 Identities=9% Similarity=0.028 Sum_probs=29.6
Q ss_pred HHHHHHhhCCCCHHHHHhhcCCChhHHHHHHHHHH
Q 043012 80 SGMVEAWASGLTWREMMMDCALDDGDLARLLRRTI 114 (151)
Q Consensus 80 ~~~v~~Wa~G~~f~eil~~t~l~EGdiVR~~rRl~ 114 (151)
..++..+..|.|..+|.+..+++..+|-|+++|-.
T Consensus 13 ~~i~~~~~~G~s~~~ia~~lgis~~Tv~r~~~~~~ 47 (141)
T 1u78_A 13 AQLDVMKLLNVSLHEMSRKISRSRHCIRVYLKDPV 47 (141)
T ss_dssp HHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHSGG
T ss_pred HHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHccc
Confidence 45566678999999999999999999999998754
No 74
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=50.51 E-value=24 Score=20.28 Aligned_cols=37 Identities=8% Similarity=0.169 Sum_probs=28.8
Q ss_pred hhCCCC----HHHHHhhcCCChhHHHHHHHHHHHHHhhcCC
Q 043012 86 WASGLT----WREMMMDCALDDGDLARLLRRTIDLLAQIPK 122 (151)
Q Consensus 86 Wa~G~~----f~eil~~t~l~EGdiVR~~rRl~elLrQl~~ 122 (151)
-..|.| ..++...-++..+.|-+|+++..++-..|++
T Consensus 18 ~~~g~s~~~~~~~vA~~~gIs~~tl~~W~~~~~~~~~~~~~ 58 (59)
T 2glo_A 18 YRNDNDCKGNQRATARKYNIHRRQIQKWLQCESNLRSSVAN 58 (59)
T ss_dssp HHHCTTTTTCHHHHHHHTTSCHHHHHHHHTTHHHHHHHHTC
T ss_pred HHcCCCcchHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhc
Confidence 346777 8888888889899998998887777666643
No 75
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=50.23 E-value=35 Score=23.71 Aligned_cols=43 Identities=12% Similarity=0.156 Sum_probs=34.9
Q ss_pred chHHHHHH-HhhCCCCHHHHHhhcCCChhHHHHHHHHHHHHHhh
Q 043012 77 SQFSGMVE-AWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQ 119 (151)
Q Consensus 77 ~~l~~~v~-~Wa~G~~f~eil~~t~l~EGdiVR~~rRl~elLrQ 119 (151)
+.--.++. ....|.|..||.+..+++++.+=+.+.|.-.-||+
T Consensus 143 ~~~r~vl~l~~~~g~s~~EIA~~lgis~~tV~~~l~ra~~~Lr~ 186 (194)
T 1or7_A 143 EDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDN 186 (194)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 33334453 46799999999999999999999999988888876
No 76
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=50.22 E-value=35 Score=23.20 Aligned_cols=68 Identities=10% Similarity=0.134 Sum_probs=43.6
Q ss_pred hhHHHHHHHHHHHH-HHHHHHHHHcCCCCCCCCCchHHHHHHHhhCCCCHHHHHhhcCCChhHHHHHHHHHHH
Q 043012 44 TTVINVINVLDEHR-SSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTID 115 (151)
Q Consensus 44 ~~l~~~~~~l~~~~-~~l~~~~~~~~l~~~~~~~~~l~~~v~~Wa~G~~f~eil~~t~l~EGdiVR~~rRl~e 115 (151)
..+...+..+.... ..+......+|+..+ .+.++..++. ..|.+..+|.+...+..+.+-|.+.||++
T Consensus 18 ~~l~~~l~~~~~~~~~~~~~~l~~~glt~~---q~~iL~~l~~-~~~~t~~eLa~~l~~~~~tvs~~l~~Le~ 86 (162)
T 3k0l_A 18 PRLSYMIARVDRIISKYLTEHLSALEISLP---QFTALSVLAA-KPNLSNAKLAERSFIKPQSANKILQDLLA 86 (162)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHTTTCCHH---HHHHHHHHHH-CTTCCHHHHHHHHTSCGGGHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHhhhcCCCHH---HHHHHHHHHH-CCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34555454444433 334444456676532 1233333332 25689999999999999999999999987
No 77
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=49.70 E-value=16 Score=20.36 Aligned_cols=30 Identities=17% Similarity=0.197 Sum_probs=25.0
Q ss_pred HHHhhCCCCHHHHHhhcCCChhHHHHHHHH
Q 043012 83 VEAWASGLTWREMMMDCALDDGDLARLLRR 112 (151)
Q Consensus 83 v~~Wa~G~~f~eil~~t~l~EGdiVR~~rR 112 (151)
...+..|.|..+|.+..+++..++=|++++
T Consensus 25 ~~l~~~g~s~~eIA~~lgis~~TV~~~l~~ 54 (55)
T 2x48_A 25 HELAKMGYTVQQIANALGVSERKVRRYLES 54 (55)
T ss_dssp HHHHHTTCCHHHHHHHHTSCHHHHHHHHTC
T ss_pred HHHHHcCCCHHHHHHHHCcCHHHHHHHHHh
Confidence 334679999999999999999999887754
No 78
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=49.35 E-value=30 Score=24.13 Aligned_cols=55 Identities=13% Similarity=0.059 Sum_probs=36.9
Q ss_pred HHHHHHHHcCCCCCCCCCchHHHHHHHhhC--CCCHHHHHhhcCCChhHHHHHHHHHHHH
Q 043012 59 SFLELQEKHGVEIPCCLDSQFSGMVEAWAS--GLTWREMMMDCALDDGDLARLLRRTIDL 116 (151)
Q Consensus 59 ~l~~~~~~~~l~~~~~~~~~l~~~v~~Wa~--G~~f~eil~~t~l~EGdiVR~~rRl~el 116 (151)
.+......+|+.. ..+.++..++.--. |.+..+|.+...+..+.+-|.++||++-
T Consensus 57 ~~~~~l~~~glt~---~~~~iL~~L~~~~~~~~~t~~eLa~~l~is~~tvs~~l~~Le~~ 113 (181)
T 2fbk_A 57 EIERTYAASGLNA---AGWDLLLTLYRSAPPEGLRPTELSALAAISGPSTSNRIVRLLEK 113 (181)
T ss_dssp HHHHHHHTTTCCH---HHHHHHHHHHHHCCSSCBCHHHHHHHCSCCSGGGSSHHHHHHHH
T ss_pred HHHHHHHHcCCCH---HHHHHHHHHHHcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 3444445566542 12334444433222 3899999999999999999999999873
No 79
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=49.04 E-value=41 Score=24.38 Aligned_cols=32 Identities=9% Similarity=0.091 Sum_probs=28.2
Q ss_pred HHhh-CCCCHHHHHhhcCCChhHHHHHHHHHHH
Q 043012 84 EAWA-SGLTWREMMMDCALDDGDLARLLRRTID 115 (151)
Q Consensus 84 ~~Wa-~G~~f~eil~~t~l~EGdiVR~~rRl~e 115 (151)
+-|. .|.+..+|.+...+..+.+.|.+.||++
T Consensus 56 ~L~~~~~~t~~eLa~~l~i~~stvs~~l~~Le~ 88 (207)
T 2fxa_A 56 IAYQLNGASISEIAKFGVMHVSTAFNFSKKLEE 88 (207)
T ss_dssp HHHHHTSEEHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHCCCcCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3443 5799999999999999999999999987
No 80
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=49.02 E-value=20 Score=23.77 Aligned_cols=33 Identities=30% Similarity=0.433 Sum_probs=28.4
Q ss_pred HHhh-CCCCHHHHHhhcCCChhHHHHHHHHHHHH
Q 043012 84 EAWA-SGLTWREMMMDCALDDGDLARLLRRTIDL 116 (151)
Q Consensus 84 ~~Wa-~G~~f~eil~~t~l~EGdiVR~~rRl~el 116 (151)
+-|. .+.+..+|.+...+..+.+-|.+++|.+-
T Consensus 48 ~l~~~~~~~~~~la~~l~~~~~tvs~~l~~L~~~ 81 (147)
T 1z91_A 48 LLWEHETLTVKKMGEQLYLDSGTLTPMLKRMEQQ 81 (147)
T ss_dssp HHHHHSEEEHHHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHCCCCCHHHHHHHHCCCcCcHHHHHHHHHHC
Confidence 3343 46899999999999999999999999985
No 81
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=48.35 E-value=11 Score=32.78 Aligned_cols=46 Identities=15% Similarity=0.310 Sum_probs=37.0
Q ss_pred HHHHHHHhhCCCCHHHHHhhcCCChhHHHHHHHHHHHHHhhcCCCC
Q 043012 79 FSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLP 124 (151)
Q Consensus 79 l~~~v~~Wa~G~~f~eil~~t~l~EGdiVR~~rRl~elLrQl~~a~ 124 (151)
..-++++|.++.++.+|.+..++..||+.....+..-+++-+...+
T Consensus 573 ~~llL~~~i~~~~l~~i~~~~~~~~gdl~~~~~~a~~l~~a~~~i~ 618 (720)
T 2zj8_A 573 TALVLLAWINEVPEGEIVEKYSVEPGDIYRIVETAEWLVYSLKEIA 618 (720)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHhCCChHhHHHHHHHHHHHHHHHHHHH
Confidence 5667799999999999999999999999887776666666554443
No 82
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=48.25 E-value=21 Score=24.29 Aligned_cols=51 Identities=14% Similarity=0.099 Sum_probs=35.6
Q ss_pred HHHHHHHcCCCCCCCCCchHHHHHHHhh-CCCCHHHHHhhcCCChhHHHHHHHHHHH
Q 043012 60 FLELQEKHGVEIPCCLDSQFSGMVEAWA-SGLTWREMMMDCALDDGDLARLLRRTID 115 (151)
Q Consensus 60 l~~~~~~~~l~~~~~~~~~l~~~v~~Wa-~G~~f~eil~~t~l~EGdiVR~~rRl~e 115 (151)
+......+|+..+ .+.++. +-|. .|.+..+|.+..++..+.+-|.+++|++
T Consensus 41 ~~~~l~~~~lt~~---~~~iL~--~l~~~~~~t~~ela~~l~is~~tvs~~l~~Le~ 92 (162)
T 3cjn_A 41 LRKEMTALGLSTA---KMRALA--ILSAKDGLPIGTLGIFAVVEQSTLSRALDGLQA 92 (162)
T ss_dssp HHTTHHHHTCCHH---HHHHHH--HHHHSCSEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHH---HHHHHH--HHHHCCCCCHHHHHHHHCCChhHHHHHHHHHHH
Confidence 3334445666421 123333 4453 4589999999999999999999999987
No 83
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=47.92 E-value=21 Score=22.47 Aligned_cols=26 Identities=0% Similarity=-0.029 Sum_probs=24.9
Q ss_pred CCHHHHHhhcCCChhHHHHHHHHHHH
Q 043012 90 LTWREMMMDCALDDGDLARLLRRTID 115 (151)
Q Consensus 90 ~~f~eil~~t~l~EGdiVR~~rRl~e 115 (151)
.+..+|.+..++..+.+-|.+.+|++
T Consensus 31 ~t~~eLa~~l~i~~~tvs~~l~~Le~ 56 (95)
T 2qvo_A 31 VYIQYIASKVNSPHSYVWLIIKKFEE 56 (95)
T ss_dssp EEHHHHHHHSSSCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 89999999999999999999999987
No 84
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=47.70 E-value=46 Score=21.01 Aligned_cols=45 Identities=16% Similarity=0.138 Sum_probs=37.9
Q ss_pred CCCCchHHHHHHHhhCCCCHHHHHhhcCCChhHHHHHHHHHHHHH
Q 043012 73 CCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLL 117 (151)
Q Consensus 73 ~~~~~~l~~~v~~Wa~G~~f~eil~~t~l~EGdiVR~~rRl~elL 117 (151)
..+.+.-..++...+.|.|-.||-+..+++++++=..++|+..-|
T Consensus 28 ~~Lt~rE~~Vl~l~~~G~s~~eIA~~L~iS~~TV~~~~~~i~~Kl 72 (90)
T 3ulq_B 28 DVLTPRECLILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKL 72 (90)
T ss_dssp -CCCHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 456677888888899999999999999999999988888875544
No 85
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=47.40 E-value=46 Score=21.39 Aligned_cols=30 Identities=13% Similarity=-0.042 Sum_probs=26.6
Q ss_pred hhCCCCHHHHHhhc-CCChhHHHHHHHHHHH
Q 043012 86 WASGLTWREMMMDC-ALDDGDLARLLRRTID 115 (151)
Q Consensus 86 Wa~G~~f~eil~~t-~l~EGdiVR~~rRl~e 115 (151)
+-.+.+|.+|.+.. +++.+.+-+.+++|++
T Consensus 24 ~~~~~~~~eLa~~l~~is~~tls~~L~~Le~ 54 (107)
T 2hzt_A 24 THGKKRTSELKRLMPNITQKMLTQQLRELEA 54 (107)
T ss_dssp TTCCBCHHHHHHHCTTSCHHHHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 33459999999998 9999999999999987
No 86
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=47.11 E-value=40 Score=21.91 Aligned_cols=40 Identities=10% Similarity=0.066 Sum_probs=32.0
Q ss_pred CCchHHHHHHHhhCCCCHHHHHhhcC----CChhHHHHHHHHHHH
Q 043012 75 LDSQFSGMVEAWASGLTWREMMMDCA----LDDGDLARLLRRTID 115 (151)
Q Consensus 75 ~~~~l~~~v~~Wa~G~~f~eil~~t~----l~EGdiVR~~rRl~e 115 (151)
....++.+++. ..+.+-.||.+... +..+++-|.+.||++
T Consensus 36 ~e~~VL~~L~~-~~~~t~~eL~~~l~~~~~~s~sTVt~~L~rLe~ 79 (99)
T 2k4b_A 36 AELIVMRVIWS-LGEARVDEIYAQIPQELEWSLATVKTLLGRLVK 79 (99)
T ss_dssp SCSHHHHHHHH-HSCEEHHHHHHTCCGGGCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh-CCCCCHHHHHHHHhcccCCCHhhHHHHHHHHHH
Confidence 34677777765 45699999999875 568999999999987
No 87
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=46.84 E-value=28 Score=30.01 Aligned_cols=43 Identities=16% Similarity=0.246 Sum_probs=34.1
Q ss_pred hHHHHHHHhhCCCCHHHHHhhcCCChhHHHHHHHHHHHHHhhc
Q 043012 78 QFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQI 120 (151)
Q Consensus 78 ~l~~~v~~Wa~G~~f~eil~~t~l~EGdiVR~~rRl~elLrQl 120 (151)
...-++++|.++.++.+|.+..++..||+........-+++-+
T Consensus 562 k~~~lL~~~~~~~~l~~i~~~~~~~~gdl~~i~~~a~~l~~a~ 604 (702)
T 2p6r_A 562 KTALCLKDWIEEKDEDEICAKYGIAPGDLRRIVETAEWLSNAM 604 (702)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCChHHHHHHhCCcHHhHHHHHHHHHHHHHHH
Confidence 3566789999999999999999999999887666555544443
No 88
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=45.97 E-value=42 Score=22.41 Aligned_cols=33 Identities=24% Similarity=0.284 Sum_probs=28.3
Q ss_pred HHhh-CCCCHHHHHhhcCCChhHHHHHHHHHHHH
Q 043012 84 EAWA-SGLTWREMMMDCALDDGDLARLLRRTIDL 116 (151)
Q Consensus 84 ~~Wa-~G~~f~eil~~t~l~EGdiVR~~rRl~el 116 (151)
+-|. .+.+..+|.+...+..+.+-|.+++|++-
T Consensus 55 ~l~~~~~~t~~ela~~l~~s~~tvs~~l~~Le~~ 88 (153)
T 2pex_A 55 VLWETDERSVSEIGERLYLDSATLTPLLKRLQAA 88 (153)
T ss_dssp HHHHSCSEEHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred HHHhCCCcCHHHHHHHhCCCcccHHHHHHHHHHC
Confidence 4454 45899999999999999999999999874
No 89
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=45.78 E-value=47 Score=22.31 Aligned_cols=26 Identities=15% Similarity=0.226 Sum_probs=24.4
Q ss_pred CCHHHHHhhcCCChhHHHHHHHHHHH
Q 043012 90 LTWREMMMDCALDDGDLARLLRRTID 115 (151)
Q Consensus 90 ~~f~eil~~t~l~EGdiVR~~rRl~e 115 (151)
-|..+|.+.++++++++.|.+++|++
T Consensus 52 ps~~~LA~~l~~s~~~V~~~l~~Le~ 77 (128)
T 2vn2_A 52 PTPAELAERMTVSAAECMEMVRRLLQ 77 (128)
T ss_dssp CCHHHHHHTSSSCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 68899999999999999999999987
No 90
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=45.71 E-value=64 Score=21.43 Aligned_cols=53 Identities=15% Similarity=0.272 Sum_probs=39.2
Q ss_pred HHHHHHHHcCCCCCCCCCchHHHHHHHhhCCCCHHHHHhhcCCChhHHHHHHHHHHHH
Q 043012 59 SFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDL 116 (151)
Q Consensus 59 ~l~~~~~~~~l~~~~~~~~~l~~~v~~Wa~G~~f~eil~~t~l~EGdiVR~~rRl~el 116 (151)
.+......+|+..+ .+.++..+ =..|.+..+|.+...++.+.+-|.+.||++-
T Consensus 26 ~~~~~~~~~~lt~~---q~~iL~~l--~~~~~t~~eLa~~l~~~~~~vs~~l~~Le~~ 78 (151)
T 3kp7_A 26 LLKDLQTEYGISAE---QSHVLNML--SIEALTVGQITEKQGVNKAAVSRRVKKLLNA 78 (151)
T ss_dssp HHHHHHHHHTCCHH---HHHHHHHH--HHSCBCHHHHHHHHCSCSSHHHHHHHHHHHT
T ss_pred HHHHHhhcCCCCHH---HHHHHHHH--HcCCcCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 34445556777533 23455555 3477999999999999999999999999874
No 91
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=45.53 E-value=48 Score=21.57 Aligned_cols=51 Identities=12% Similarity=0.123 Sum_probs=36.5
Q ss_pred HHHHHHHcCCCCCCCCCchHHHHHHHhh-CCCCHHHHHhhcCCChhHHHHHHHHHHH
Q 043012 60 FLELQEKHGVEIPCCLDSQFSGMVEAWA-SGLTWREMMMDCALDDGDLARLLRRTID 115 (151)
Q Consensus 60 l~~~~~~~~l~~~~~~~~~l~~~v~~Wa-~G~~f~eil~~t~l~EGdiVR~~rRl~e 115 (151)
+......+|+.. ..+.-+.+-|. .+.+..+|.+...++.+.+-|.+++|++
T Consensus 25 ~~~~~~~~~lt~-----~~~~iL~~l~~~~~~t~~ela~~l~~s~~~vs~~l~~Le~ 76 (142)
T 2fbi_A 25 FRPSLNQHGLTE-----QQWRVIRILRQQGEMESYQLANQACILRPSMTGVLARLER 76 (142)
T ss_dssp THHHHHHHTCCH-----HHHHHHHHHHHHCSEEHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCH-----HHHHHHHHHHHcCCCCHHHHHHHHCCCHhHHHHHHHHHHH
Confidence 344445677642 22333334454 5689999999999999999999999988
No 92
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=44.12 E-value=58 Score=22.06 Aligned_cols=27 Identities=22% Similarity=0.174 Sum_probs=24.5
Q ss_pred CCHHHHHhhcCCChhHHHHHHHHHHHH
Q 043012 90 LTWREMMMDCALDDGDLARLLRRTIDL 116 (151)
Q Consensus 90 ~~f~eil~~t~l~EGdiVR~~rRl~el 116 (151)
.|-.+|.+...+..+.+.|.+.||++-
T Consensus 53 ~t~~eLa~~l~~~~~tvsr~v~~Le~~ 79 (148)
T 4fx0_A 53 LTMSELAARIGVERTTLTRNLEVMRRD 79 (148)
T ss_dssp -CHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHCCChhhHHHHHHHHHHC
Confidence 689999999999999999999999864
No 93
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=43.99 E-value=65 Score=21.03 Aligned_cols=51 Identities=22% Similarity=0.387 Sum_probs=36.2
Q ss_pred HHHHHHcCCCCCCCCCchHHHHHHHhhC-CCCHHHHHhhcCCChhHHHHHHHHHHHH
Q 043012 61 LELQEKHGVEIPCCLDSQFSGMVEAWAS-GLTWREMMMDCALDDGDLARLLRRTIDL 116 (151)
Q Consensus 61 ~~~~~~~~l~~~~~~~~~l~~~v~~Wa~-G~~f~eil~~t~l~EGdiVR~~rRl~el 116 (151)
......+|+.. ..+.-+.+-|.. +.+..+|.+...++.+.+-|.+++|.+-
T Consensus 27 ~~~~~~~~l~~-----~~~~iL~~l~~~~~~~~~ela~~l~~~~~tvs~~l~~L~~~ 78 (142)
T 2bv6_A 27 NKVFKKYNLTY-----PQFLVLTILWDESPVNVKKVVTELALDTGTVSPLLKRMEQV 78 (142)
T ss_dssp HHTHHHHTCCH-----HHHHHHHHHHHSSEEEHHHHHHHTTCCTTTHHHHHHHHHHT
T ss_pred HHHhhhcCCCH-----HHHHHHHHHHHcCCcCHHHHHHHHCCChhhHHHHHHHHHHC
Confidence 44446677642 122223344544 4899999999999999999999999884
No 94
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=43.96 E-value=39 Score=21.87 Aligned_cols=60 Identities=10% Similarity=0.077 Sum_probs=41.0
Q ss_pred hHHHHHHHhhCCCCHHHHHhhcCCChhHHHHHHHHHHHHHhhcCCC--CC-----C-CHHHHHHHHHHHhh
Q 043012 78 QFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKL--PD-----V-DQRLQKNAVDASNV 140 (151)
Q Consensus 78 ~l~~~v~~Wa~G~~f~eil~~t~l~EGdiVR~~rRl~elLrQl~~a--~~-----~-~~~L~~k~~~a~~~ 140 (151)
.+...++. .+.++.++.+..+++.+.+-|.+++|.+ .+-+..- .+ . ...+.+.++.+.+.
T Consensus 36 ~il~~L~~--~~~s~~ela~~l~is~stvsr~l~~Le~-~Glv~~~~~~r~~~~~~~~~~~~~~~~~~~~~ 103 (119)
T 2lkp_A 36 MILTQLRN--GPLPVTDLAEAIGMEQSAVSHQLRVLRN-LGLVVGDRAGRSIVYSLYDTHVAQLLDEAIYH 103 (119)
T ss_dssp HHHHHHHH--CCCCHHHHHHHHSSCHHHHHHHHHHHHH-HCSEEEEEETTEEEEEESCHHHHHHHHHHHHH
T ss_pred HHHHHHHH--CCCCHHHHHHHHCcCHHHHHHHHHHHHH-CCCEEEEecCCEEEEEEchHHHHHHHHHHHHH
Confidence 34444443 5799999999999999999999999999 5554221 11 1 45665555555443
No 95
>4gyt_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, predicted legionella effector; 2.05A {Legionella pneumophila subsp}
Probab=43.55 E-value=43 Score=24.34 Aligned_cols=20 Identities=10% Similarity=0.320 Sum_probs=16.9
Q ss_pred CCCHHHHHHHHHHhhccccc
Q 043012 10 DLKPAQLAAVCASLVSEGIK 29 (151)
Q Consensus 10 ~L~p~elAAllS~~v~e~~~ 29 (151)
.++|+|+=++++++++-+..
T Consensus 27 ~~s~sElHG~L~Gll~gg~~ 46 (194)
T 4gyt_A 27 TMSGSELHGIMCGYLCAGAD 46 (194)
T ss_dssp SSCHHHHHHHHHHHHHTTCH
T ss_pred CCCHHHHHHHHHHHHhCCCC
Confidence 58999999999999986543
No 96
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=42.59 E-value=50 Score=22.12 Aligned_cols=47 Identities=15% Similarity=0.279 Sum_probs=34.1
Q ss_pred HcCCCCCCCCCchHHHHHHHhh-CCCCHHHHHhhcCCChhHHHHHHHHHHHH
Q 043012 66 KHGVEIPCCLDSQFSGMVEAWA-SGLTWREMMMDCALDDGDLARLLRRTIDL 116 (151)
Q Consensus 66 ~~~l~~~~~~~~~l~~~v~~Wa-~G~~f~eil~~t~l~EGdiVR~~rRl~el 116 (151)
.+|+..+ .+.++..++ |. .|.+..+|.+..++..+.+-|.+++|++.
T Consensus 42 ~~~l~~~---~~~iL~~L~-~~~~~~~~~ela~~l~i~~~tvs~~l~~Le~~ 89 (160)
T 3boq_A 42 ETGLSLA---KFDAMAQLA-RNPDGLSMGKLSGALKVTNGNVSGLVNRLIKD 89 (160)
T ss_dssp HHSCCHH---HHHHHHHHH-HCTTCEEHHHHHHHCSSCCSCHHHHHHHHHHH
T ss_pred hcCCCHH---HHHHHHHHH-HcCCCCCHHHHHHHHCCChhhHHHHHHHHHHC
Confidence 5666422 223333332 33 46999999999999999999999999884
No 97
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=41.02 E-value=52 Score=21.62 Aligned_cols=37 Identities=8% Similarity=0.080 Sum_probs=31.7
Q ss_pred HHHHHHHhhCCCCHHHHHhhcCCChhHHHHHHHHHHH
Q 043012 79 FSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTID 115 (151)
Q Consensus 79 l~~~v~~Wa~G~~f~eil~~t~l~EGdiVR~~rRl~e 115 (151)
+.-+.+-|..|.+..+|.+..+++.+.+-|.++||.+
T Consensus 41 ~~iL~~l~~~~~t~~eLa~~l~~s~~tvs~~l~~L~~ 77 (146)
T 3tgn_A 41 EHILMLLSEESLTNSELARRLNVSQAAVTKAIKSLVK 77 (146)
T ss_dssp HHHHHHHTTCCCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3334466888899999999999999999999999986
No 98
>3c37_A Peptidase, M48 family; Q74D82, GSR143A, structural genomics, protein structure initiative, northeast structural genomics consortium; 1.70A {Geobacter sulfurreducens pca}
Probab=40.94 E-value=3.3 Score=31.74 Aligned_cols=21 Identities=24% Similarity=0.308 Sum_probs=18.4
Q ss_pred CccccCCCCCC-CHHHHHHHHH
Q 043012 1 MVLRNKILLDL-KPAQLAAVCA 21 (151)
Q Consensus 1 ~~L~~g~f~~L-~p~elAAllS 21 (151)
+++++|+++.+ +++||+||++
T Consensus 84 I~v~~gLl~~l~~~~ELaaVLa 105 (253)
T 3c37_A 84 VYVHTGLLKAADNETELAGVLA 105 (253)
T ss_dssp EEEEHHHHHHCSSHHHHHHHHH
T ss_pred EEeeHHHHhhCCCHHHHHHHHH
Confidence 36788999999 8999999987
No 99
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=40.79 E-value=20 Score=22.24 Aligned_cols=29 Identities=14% Similarity=0.117 Sum_probs=26.6
Q ss_pred CCCCHHHHHhhcCCChhHHHHHHHHHHHH
Q 043012 88 SGLTWREMMMDCALDDGDLARLLRRTIDL 116 (151)
Q Consensus 88 ~G~~f~eil~~t~l~EGdiVR~~rRl~el 116 (151)
.+.++.+|.+..+++.+.+-|.+++|.+.
T Consensus 29 ~~~~~~ela~~l~is~~tvs~~l~~L~~~ 57 (100)
T 1ub9_A 29 RKAPFSQIQKVLDLTPGNLDSHIRVLERN 57 (100)
T ss_dssp SEEEHHHHHHHTTCCHHHHHHHHHHHHHT
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 56899999999999999999999999874
No 100
>3iwf_A Transcription regulator RPIR family; transcriptional, N-terminal, PSI, MCSG, structural genomics, midwest center structural genomics; 1.40A {Staphylococcus epidermidis}
Probab=40.67 E-value=35 Score=22.49 Aligned_cols=28 Identities=14% Similarity=0.183 Sum_probs=25.2
Q ss_pred hhCCCCHHHHHhhcCCChhHHHHHHHHH
Q 043012 86 WASGLTWREMMMDCALDDGDLARLLRRT 113 (151)
Q Consensus 86 Wa~G~~f~eil~~t~l~EGdiVR~~rRl 113 (151)
.....|..++.+.+.+++-+|+|.++++
T Consensus 32 ~~~~~si~elA~~~~vS~aTv~Rf~kkL 59 (107)
T 3iwf_A 32 KVVNMTSQEIANQLETSSTSIIRLSKKV 59 (107)
T ss_dssp HHTTCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHCCHHHHHHHHCCCHHHHHHHHHHh
Confidence 4567889999999999999999999987
No 101
>2ga1_A Protein of unknown function DUF433; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.00A {Anabaena variabilis} SCOP: a.4.1.16
Probab=39.91 E-value=51 Score=22.02 Aligned_cols=46 Identities=17% Similarity=0.110 Sum_probs=36.2
Q ss_pred CCchHHHHHHHhhCCCCHHHHHhhc-CCChhHHHHHHHHHHHHHhhc
Q 043012 75 LDSQFSGMVEAWASGLTWREMMMDC-ALDDGDLARLLRRTIDLLAQI 120 (151)
Q Consensus 75 ~~~~l~~~v~~Wa~G~~f~eil~~t-~l~EGdiVR~~rRl~elLrQl 120 (151)
..-..-.++..|+.|.|..+|++.- ++...||.-++.=-.+...+|
T Consensus 50 TRI~V~~Il~~l~~G~s~eeIl~~yP~Lt~edI~aAL~Ya~~~~~eI 96 (106)
T 2ga1_A 50 TRIPVWTLVAYRQQGAPDKELLANYPGLTAEDLSAAWHYYEQNPEQI 96 (106)
T ss_dssp SCCBHHHHHHHHHTTCCHHHHHHHSTTCCHHHHHHHHHHHHHSHHHH
T ss_pred ceeeHHHHHHHHHcCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
Confidence 4556777888899999999999997 899999988776555544443
No 102
>3may_A RV0203, possible exported protein; helical protein, heme-binding protein; 2.50A {Mycobacterium tuberculosis}
Probab=39.57 E-value=37 Score=22.68 Aligned_cols=25 Identities=16% Similarity=0.222 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCCC
Q 043012 49 VINVLDEHRSSFLELQEKHGVEIPC 73 (151)
Q Consensus 49 ~~~~l~~~~~~l~~~~~~~~l~~~~ 73 (151)
....|+.|...|.++..+||++.++
T Consensus 62 v~~dL~~I~qPl~Dl~~rC~~~v~p 86 (101)
T 3may_A 62 VASDLHALSQPLTDLSTRCSLPISG 86 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCSCSS
T ss_pred HHHHHHHHHhhHHHHHHhcCCCCCh
Confidence 4568999999999999999998764
No 103
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=39.47 E-value=77 Score=20.80 Aligned_cols=33 Identities=9% Similarity=0.091 Sum_probs=28.7
Q ss_pred HHhhC-CCCHHHHHhhcCCChhHHHHHHHHHHHH
Q 043012 84 EAWAS-GLTWREMMMDCALDDGDLARLLRRTIDL 116 (151)
Q Consensus 84 ~~Wa~-G~~f~eil~~t~l~EGdiVR~~rRl~el 116 (151)
+-|.. |.+..+|.+..++..+.+-|.+++|++.
T Consensus 48 ~l~~~~~~t~~ela~~l~~~~~tvs~~l~~Le~~ 81 (148)
T 3nrv_A 48 VLSSASDCSVQKISDILGLDKAAVSRTVKKLEEK 81 (148)
T ss_dssp HHHHSSSBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred HHHcCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 44544 5899999999999999999999999985
No 104
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=39.39 E-value=64 Score=22.14 Aligned_cols=28 Identities=14% Similarity=-0.005 Sum_probs=25.3
Q ss_pred CCCCHHHHHhhcCCChhHHHHHHHHHHH
Q 043012 88 SGLTWREMMMDCALDDGDLARLLRRTID 115 (151)
Q Consensus 88 ~G~~f~eil~~t~l~EGdiVR~~rRl~e 115 (151)
.+-|..+|.+.++++++++.|.+.+|++
T Consensus 50 ~~ps~~~LA~~~~~s~~~v~~~L~~L~~ 77 (135)
T 2v79_A 50 YFPTPNQLQEGMSISVEECTNRLRMFIQ 77 (135)
T ss_dssp CSCCHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3468899999999999999999999988
No 105
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=38.62 E-value=37 Score=21.20 Aligned_cols=32 Identities=6% Similarity=0.134 Sum_probs=27.2
Q ss_pred HHhh-CCCCHHHH----HhhcCCChhHHHHHHHHHHH
Q 043012 84 EAWA-SGLTWREM----MMDCALDDGDLARLLRRTID 115 (151)
Q Consensus 84 ~~Wa-~G~~f~ei----l~~t~l~EGdiVR~~rRl~e 115 (151)
+-|. .|.+..+| .+..++..+.+-|.+++|++
T Consensus 16 ~l~~~~~~~~~el~~~la~~l~is~~tvs~~l~~Le~ 52 (99)
T 1tbx_A 16 YLYDNEGIATYDLYKKVNAEFPMSTATFYDAKKFLIQ 52 (99)
T ss_dssp HHTTCTTCBHHHHHHHHHTTSCCCHHHHHHHHHHHHH
T ss_pred HHHHcCCcCHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 3454 45899999 78889999999999999998
No 106
>2o3f_A Putative HTH-type transcriptional regulator YBBH; APC85504, putative transcriptional regulator YBBH; HET: MLY; 1.75A {Bacillus subtilis} SCOP: a.4.1.20
Probab=38.42 E-value=27 Score=23.11 Aligned_cols=28 Identities=21% Similarity=0.069 Sum_probs=24.4
Q ss_pred hhCCCCHHHHHhhcCCChhHHHHHHHHH
Q 043012 86 WASGLTWREMMMDCALDDGDLARLLRRT 113 (151)
Q Consensus 86 Wa~G~~f~eil~~t~l~EGdiVR~~rRl 113 (151)
.....|-.++.+.+.+++-+|+|.++++
T Consensus 36 ~~~~~si~elA~~~~vS~aTv~Rf~kkl 63 (111)
T 2o3f_A 36 XAIESTVNEISALANSSDAAVIRLCXSL 63 (111)
T ss_dssp HHHTCCHHHHHHHTTCCHHHHHHHHHHT
T ss_pred HHHhcCHHHHHHHHCCCHHHHHHHHHHc
Confidence 3456899999999999999999998875
No 107
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=38.10 E-value=49 Score=22.57 Aligned_cols=49 Identities=6% Similarity=0.100 Sum_probs=40.1
Q ss_pred CCCchHHHHHH-HhhCCCCHHHHHhhcCCChhHHHHHHHHHHHHHhhcCC
Q 043012 74 CLDSQFSGMVE-AWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPK 122 (151)
Q Consensus 74 ~~~~~l~~~v~-~Wa~G~~f~eil~~t~l~EGdiVR~~rRl~elLrQl~~ 122 (151)
.+.+.--.++. ....|.|..||-+..++++|.+=..+.|.-.-||+.-.
T Consensus 93 ~Lp~~~r~vl~L~~~~g~s~~EIA~~lgis~~tV~~~l~rar~~Lr~~l~ 142 (157)
T 2lfw_A 93 RMTPLSRQALLLTAMEGFSPEDAAYLIEVDTSEVETLVTEALAEIEKQTR 142 (157)
T ss_dssp TSCTTHHHHHTTTSSSCCCHHHHHHTTTSCHHHHHHHHHHHHHHHHTTSS
T ss_pred hCCHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHH
Confidence 35555556664 46899999999999999999999999999999988543
No 108
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=37.73 E-value=36 Score=20.94 Aligned_cols=30 Identities=23% Similarity=0.173 Sum_probs=26.4
Q ss_pred hhC-CCCHHHHHhhcCCChhHHHHHHHHHHH
Q 043012 86 WAS-GLTWREMMMDCALDDGDLARLLRRTID 115 (151)
Q Consensus 86 Wa~-G~~f~eil~~t~l~EGdiVR~~rRl~e 115 (151)
|.. +.+..+|.+..+++.+.+-|.+++|.+
T Consensus 34 ~~~~~~s~~ela~~l~is~~tvs~~l~~L~~ 64 (99)
T 3cuo_A 34 SGSPGTSAGELTRITGLSASATSQHLARMRD 64 (99)
T ss_dssp TTCCSEEHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred HhCCCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 444 589999999999999999999999975
No 109
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=37.43 E-value=66 Score=20.54 Aligned_cols=38 Identities=11% Similarity=0.052 Sum_probs=30.9
Q ss_pred hHHHHHHHhh---CCCCHHHHHhhcCCChhHHHHHHHHHHH
Q 043012 78 QFSGMVEAWA---SGLTWREMMMDCALDDGDLARLLRRTID 115 (151)
Q Consensus 78 ~l~~~v~~Wa---~G~~f~eil~~t~l~EGdiVR~~rRl~e 115 (151)
.++-.-+-|. .|.+-.+|.+.++++-+.+-|+++||++
T Consensus 22 q~~Vl~~I~~~g~~gi~qkeLa~~~~l~~~tvt~iLk~LE~ 62 (91)
T 2dk5_A 22 EKLVYQIIEDAGNKGIWSRDVRYKSNLPLTEINKILKNLES 62 (91)
T ss_dssp HHHHHHHHHHHCTTCEEHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCcCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3444445664 3799999999999999999999999986
No 110
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=36.82 E-value=25 Score=19.57 Aligned_cols=15 Identities=33% Similarity=0.481 Sum_probs=11.2
Q ss_pred CCCCHHHHHHHHHHh
Q 043012 9 LDLKPAQLAAVCASL 23 (151)
Q Consensus 9 ~~L~p~elAAllS~~ 23 (151)
++.+|+|+||+=|-+
T Consensus 15 egfspeelaalesel 29 (48)
T 1g6u_A 15 EGFSPEELAALESEL 29 (48)
T ss_dssp TTCSHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHH
Confidence 467899999986643
No 111
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=35.87 E-value=68 Score=23.93 Aligned_cols=47 Identities=13% Similarity=0.181 Sum_probs=39.5
Q ss_pred CCCCchHHHHHHHhhCCCCHHHHHhhcCCChhHHHHHHHHHHHHHhh
Q 043012 73 CCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQ 119 (151)
Q Consensus 73 ~~~~~~l~~~v~~Wa~G~~f~eil~~t~l~EGdiVR~~rRl~elLrQ 119 (151)
..+.+.--+++.....|.|..||-+..++++|++=..+.|.-.-|+.
T Consensus 196 ~~L~~~erevl~L~~~G~s~~EIA~~L~iS~~TVk~~l~ra~~kL~~ 242 (258)
T 3clo_A 196 NILSEREKEILRCIRKGLSSKEIAATLYISVNTVNRHRQNILEKLSV 242 (258)
T ss_dssp TSSCHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHHHHTTC
T ss_pred ccCCHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHcC
Confidence 35667777777777899999999999999999999888888777664
No 112
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=35.74 E-value=45 Score=21.37 Aligned_cols=30 Identities=10% Similarity=0.027 Sum_probs=26.4
Q ss_pred hhCCCCHHHHHhhcC-CChhHHHHHHHHHHH
Q 043012 86 WASGLTWREMMMDCA-LDDGDLARLLRRTID 115 (151)
Q Consensus 86 Wa~G~~f~eil~~t~-l~EGdiVR~~rRl~e 115 (151)
+..+.+|.+|.+..+ +..+.+-+.+++|++
T Consensus 35 ~~~~~~~~eL~~~l~gis~~~ls~~L~~Le~ 65 (107)
T 2fsw_A 35 NRRIIRYGELKRAIPGISEKMLIDELKFLCG 65 (107)
T ss_dssp TTSCEEHHHHHHHSTTCCHHHHHHHHHHHHH
T ss_pred HhCCcCHHHHHHHcccCCHHHHHHHHHHHHH
Confidence 344589999999995 999999999999987
No 113
>1s69_A Cyanoglobin, hemoglobin, HB; on 2 helical fold, heme, iron, cyanoba oxygen binding, hexacoordinate, truncated, oxygen storage-T complex; HET: FLC HEM; 1.68A {Synechocystis SP} SCOP: a.1.1.1 PDB: 1s6a_A* 1mwb_A* 1rtx_A* 2hz1_A* 2hz3_A* 2hz2_A*
Probab=35.73 E-value=67 Score=21.14 Aligned_cols=45 Identities=11% Similarity=0.189 Sum_probs=40.4
Q ss_pred cCCChhHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhc--CCCccc
Q 043012 99 CALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNAVDASNVM--DRPPIS 147 (151)
Q Consensus 99 t~l~EGdiVR~~rRl~elLrQl~~a~~~~~~L~~k~~~a~~~i--~R~iV~ 147 (151)
..+.+-.+-+|+.=+.+.|+++. .++++.+.+.++...+ |.+||.
T Consensus 77 ~~I~~~~f~~wl~~l~~al~e~~----~~~~~~~~~~~~~~~~~~r~~iv~ 123 (124)
T 1s69_A 77 HGLNGEHFDAVAEDLLATLKEMG----VPEDLIAEVAAVAGAPAHKRDVLN 123 (124)
T ss_dssp HCCCHHHHHHHHHHHHHHHHHHT----CCHHHHHHHHHHHHCHHHHHHHTT
T ss_pred CCcCHHHHHHHHHHHHHHHHHcC----CCHHHHHHHHHHHHhhccchhhhc
Confidence 48999999999999999999983 3789999999999999 999885
No 114
>3m8j_A FOCB protein; all-alpha, helix-turn-helix, transcription; 1.40A {Escherichia coli}
Probab=35.39 E-value=62 Score=21.93 Aligned_cols=52 Identities=13% Similarity=0.242 Sum_probs=41.7
Q ss_pred CCCchHHHHHHHh-hCCCCHHHHHhhcCCChhHHHHHHHHHHHHHhhcCCCCC
Q 043012 74 CLDSQFSGMVEAW-ASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPD 125 (151)
Q Consensus 74 ~~~~~l~~~v~~W-a~G~~f~eil~~t~l~EGdiVR~~rRl~elLrQl~~a~~ 125 (151)
.-......+.+.- ..|.|=.++|+..++..|-|-++++||...=+-+.++++
T Consensus 44 IrSekII~ALrdyLV~G~srkeaCe~~gV~~syfS~~L~rL~~v~~~V~~l~~ 96 (111)
T 3m8j_A 44 IHSDRVILAMKDYLVSGHSRKDVCEKYQMNNGYFSTTLGRLTRLNVLVARLAP 96 (111)
T ss_dssp CCCHHHHHHHHHHHTTCCCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred CCCHHHHHHHHHHHHcCCcHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345666666554 899999999999999999999999999887776665543
No 115
>1h3o_B Transcription initiation factor TFIID 20/15 kDa subunits; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=34.80 E-value=57 Score=20.51 Aligned_cols=28 Identities=11% Similarity=0.302 Sum_probs=20.8
Q ss_pred HHHHHHHhhcCCCCCCCHHHHHHHHHHH
Q 043012 111 RRTIDLLAQIPKLPDVDQRLQKNAVDAS 138 (151)
Q Consensus 111 rRl~elLrQl~~a~~~~~~L~~k~~~a~ 138 (151)
+++.||++||.....++|+..+-+-+-.
T Consensus 9 ~~L~~Lv~~idp~~~ld~~vee~ll~lA 36 (76)
T 1h3o_B 9 KKLQDLVREVDPNEQLDEDVEEMLLQIA 36 (76)
T ss_dssp HHHHHHHHHHCSSCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHH
Confidence 6889999999877777887766554433
No 116
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=34.32 E-value=91 Score=21.26 Aligned_cols=30 Identities=20% Similarity=0.234 Sum_probs=26.9
Q ss_pred hhCCCCHHHHHhhcCCChhHHHHHHHHHHH
Q 043012 86 WASGLTWREMMMDCALDDGDLARLLRRTID 115 (151)
Q Consensus 86 Wa~G~~f~eil~~t~l~EGdiVR~~rRl~e 115 (151)
+..+.+|.++.+..+++.+.+-+.+++|++
T Consensus 34 ~~g~~~~~eLa~~lgis~~tls~~L~~Le~ 63 (146)
T 2f2e_A 34 FEGLTRFGEFQKSLGLAKNILAARLRNLVE 63 (146)
T ss_dssp HTTCCSHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 334599999999999999999999999987
No 117
>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} SCOP: d.144.1.7 PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A*
Probab=34.09 E-value=13 Score=28.14 Aligned_cols=44 Identities=16% Similarity=0.310 Sum_probs=38.5
Q ss_pred HHHHHHHhhCCCCHHHHHhhcCCChhHHHHHHHHHHHHHhhcCC
Q 043012 79 FSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPK 122 (151)
Q Consensus 79 l~~~v~~Wa~G~~f~eil~~t~l~EGdiVR~~rRl~elLrQl~~ 122 (151)
-..+|.+++.|.++.+++....+.+..+.+.++++.+.|..+..
T Consensus 91 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~ 134 (297)
T 3fxz_A 91 ELWVVMEYLAGGSLTDVVTETCMDEGQIAAVCRECLQALEFLHS 134 (297)
T ss_dssp EEEEEEECCTTCBHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEECCCCCCHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHh
Confidence 34567889999999999999999999999999999999887754
No 118
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=33.10 E-value=59 Score=20.02 Aligned_cols=29 Identities=17% Similarity=0.201 Sum_probs=26.3
Q ss_pred hCCCCHHHHHhhcCCChhHHHHHHHHHHH
Q 043012 87 ASGLTWREMMMDCALDDGDLARLLRRTID 115 (151)
Q Consensus 87 a~G~~f~eil~~t~l~EGdiVR~~rRl~e 115 (151)
..+.+..+|.+..+++...+-|.+++|.+
T Consensus 34 ~~~~t~~ela~~l~is~~tv~~~l~~L~~ 62 (109)
T 2d1h_A 34 EKPITSEELADIFKLSKTTVENSLKKLIE 62 (109)
T ss_dssp CSCEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 56799999999999999999999999975
No 119
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=33.06 E-value=23 Score=24.38 Aligned_cols=29 Identities=14% Similarity=0.248 Sum_probs=16.3
Q ss_pred HHhhCCCCHHHHHhhcCCChhHHHHHHHH
Q 043012 84 EAWASGLTWREMMMDCALDDGDLARLLRR 112 (151)
Q Consensus 84 ~~Wa~G~~f~eil~~t~l~EGdiVR~~rR 112 (151)
..+..|.|..+|.+..++...+|-||++|
T Consensus 36 ~l~~~G~s~~~IA~~lgis~~TV~rwl~r 64 (159)
T 2k27_A 36 DLAHQGVRPCDISRQLRVSHGCVSKILGR 64 (159)
T ss_dssp HHHHHTCCHHHHHHHHTCCSHHHHHHHCC
T ss_pred HHHHcCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 33345556666665556666665555554
No 120
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=32.63 E-value=45 Score=22.54 Aligned_cols=28 Identities=7% Similarity=0.109 Sum_probs=25.6
Q ss_pred CCCHHHHHhhcCCChhHHHHHHHHHHHH
Q 043012 89 GLTWREMMMDCALDDGDLARLLRRTIDL 116 (151)
Q Consensus 89 G~~f~eil~~t~l~EGdiVR~~rRl~el 116 (151)
+.|+.+|.+..++++..+-|.+++|.+-
T Consensus 17 ~~~~~ela~~lg~s~~tv~~~l~~L~~~ 44 (150)
T 2pn6_A 17 KYSLDEIAREIRIPKATLSYRIKKLEKD 44 (150)
T ss_dssp TSCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 3899999999999999999999999873
No 121
>1l3l_A Transcriptional activator protein TRAR; helix-turn-helix DNA binding motif, alpha/beta/alpha sandwich; HET: LAE; 1.66A {Agrobacterium tumefaciens} SCOP: a.4.6.2 d.110.5.1 PDB: 1h0m_A*
Probab=32.54 E-value=1.2e+02 Score=22.03 Aligned_cols=46 Identities=17% Similarity=0.127 Sum_probs=39.5
Q ss_pred CCCCchHHHHHHHhhCCCCHHHHHhhcCCChhHHHHHHHHHHHHHh
Q 043012 73 CCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLA 118 (151)
Q Consensus 73 ~~~~~~l~~~v~~Wa~G~~f~eil~~t~l~EGdiVR~~rRl~elLr 118 (151)
..+.+.-.+++.-.+.|.|-.||-+..+++++++=..++|.-.-|.
T Consensus 172 ~~Lt~~e~~vl~~~~~g~s~~eIa~~l~is~~tV~~~~~~~~~kl~ 217 (234)
T 1l3l_A 172 AWLDPKEATYLRWIAVGKTMEEIADVEGVKYNSVRVKLREAMKRFD 217 (234)
T ss_dssp CCCCHHHHHHHHHHTTTCCHHHHHHHHTCCHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHhC
Confidence 4588888888888899999999999999999999888887766553
No 122
>2imu_A Structural polyprotein (PP) P1; IBDV, birnavirus, DPC, VP2, pore formation, viral protein; NMR {Synthetic}
Probab=32.53 E-value=24 Score=20.05 Aligned_cols=10 Identities=40% Similarity=0.690 Sum_probs=8.7
Q ss_pred hHHHHHHHHH
Q 043012 104 GDLARLLRRT 113 (151)
Q Consensus 104 GdiVR~~rRl 113 (151)
+||||.+||.
T Consensus 4 ~Diir~irr~ 13 (46)
T 2imu_A 4 KDIIRAIRRI 13 (46)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 7899999987
No 123
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=31.81 E-value=51 Score=22.27 Aligned_cols=30 Identities=10% Similarity=0.110 Sum_probs=26.5
Q ss_pred hhCCCCHHHHHhhc-CCChhHHHHHHHHHHH
Q 043012 86 WASGLTWREMMMDC-ALDDGDLARLLRRTID 115 (151)
Q Consensus 86 Wa~G~~f~eil~~t-~l~EGdiVR~~rRl~e 115 (151)
+..+.+|.+|.+.. ++..+.+-+.+++|++
T Consensus 45 ~~g~~~~~eLa~~l~gis~~tls~~L~~Le~ 75 (131)
T 1yyv_A 45 RDGTHRFSDLRRXMGGVSEXMLAQSLQALEQ 75 (131)
T ss_dssp GGCCEEHHHHHHHSTTCCHHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHhccCCHHHHHHHHHHHHH
Confidence 44458999999999 6999999999999987
No 124
>4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A
Probab=31.61 E-value=1e+02 Score=20.92 Aligned_cols=30 Identities=17% Similarity=0.165 Sum_probs=26.4
Q ss_pred hhCCCCHHHHHhhc-CCChhHHHHHHHHHHH
Q 043012 86 WASGLTWREMMMDC-ALDDGDLARLLRRTID 115 (151)
Q Consensus 86 Wa~G~~f~eil~~t-~l~EGdiVR~~rRl~e 115 (151)
+....+|.|+.+.. +++.+.+-+.+++|++
T Consensus 36 ~~g~~rf~eL~~~l~gIs~~~Ls~~L~~Le~ 66 (131)
T 4a5n_A 36 IDGKKRFNEFRRICPSITQRMLTLQLRELEA 66 (131)
T ss_dssp TTSCBCHHHHHHHCTTSCHHHHHHHHHHHHH
T ss_pred hcCCcCHHHHHHHhcccCHHHHHHHHHHHHH
Confidence 44458999999999 9999999999999987
No 125
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=31.36 E-value=91 Score=20.74 Aligned_cols=33 Identities=3% Similarity=-0.083 Sum_probs=28.5
Q ss_pred HHhh-CCCCHHHHHhhcCCChhHHHHHHHHHHHH
Q 043012 84 EAWA-SGLTWREMMMDCALDDGDLARLLRRTIDL 116 (151)
Q Consensus 84 ~~Wa-~G~~f~eil~~t~l~EGdiVR~~rRl~el 116 (151)
+-|. .+.+..+|.+..++..+.+-|.+++|++.
T Consensus 52 ~l~~~~~~t~~ela~~l~is~~tvs~~l~~Le~~ 85 (154)
T 2eth_A 52 YVALFGPKKMKEIAEFLSTTKSNVTNVVDSLEKR 85 (154)
T ss_dssp HHHHHCCBCHHHHHHHTTSCHHHHHHHHHHHHHT
T ss_pred HHHHcCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 4454 46899999999999999999999999983
No 126
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=31.03 E-value=51 Score=22.35 Aligned_cols=27 Identities=19% Similarity=0.172 Sum_probs=25.2
Q ss_pred CCCHHHHHhhcCCChhHHHHHHHHHHH
Q 043012 89 GLTWREMMMDCALDDGDLARLLRRTID 115 (151)
Q Consensus 89 G~~f~eil~~t~l~EGdiVR~~rRl~e 115 (151)
..|+.+|.+..++++..+-|.+++|.+
T Consensus 21 ~~s~~ela~~lg~s~~tv~~~l~~L~~ 47 (150)
T 2w25_A 21 RATLSELATRAGLSVSAVQSRVRRLES 47 (150)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 489999999999999999999999987
No 127
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=30.96 E-value=23 Score=24.50 Aligned_cols=46 Identities=28% Similarity=0.391 Sum_probs=37.1
Q ss_pred CCchHHHHHH-HhhCCCCHHHHHhhcCCChhHHHHHHHHHHHHHhhc
Q 043012 75 LDSQFSGMVE-AWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQI 120 (151)
Q Consensus 75 ~~~~l~~~v~-~Wa~G~~f~eil~~t~l~EGdiVR~~rRl~elLrQl 120 (151)
+.+.--.++. ....|.|..||.+..+++++.+=+.+.|...-||+.
T Consensus 136 L~~~~r~vl~l~~~~g~s~~eIA~~lgis~~tV~~~l~ra~~~Lr~~ 182 (184)
T 2q1z_A 136 LPEAQRALIERAFFGDLTHRELAAETGLPLGTIKSRIRLALDRLRQH 182 (184)
T ss_dssp SCHHHHHHHHHHHHSCCSSCCSTTTCCCCCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 3344455554 468999999999999999999999999998888763
No 128
>3zr8_X AVR3A11; protein binding, plant pathogen interactions; HET: PGE; 0.90A {Phytophthora capsici}
Probab=30.85 E-value=30 Score=21.17 Aligned_cols=22 Identities=18% Similarity=0.083 Sum_probs=18.5
Q ss_pred CchHHHHHHHh--hCCCCHHHHHh
Q 043012 76 DSQFSGMVEAW--ASGLTWREMMM 97 (151)
Q Consensus 76 ~~~l~~~v~~W--a~G~~f~eil~ 97 (151)
||.....||.| ++|.|+.+|-.
T Consensus 18 D~~~a~~vY~kW~~kgytl~qI~~ 41 (65)
T 3zr8_X 18 DPSKADDVYQKWADKGYTLTQLSD 41 (65)
T ss_dssp CGGGHHHHHHHHHHHTCCHHHHGG
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHH
Confidence 58888999887 88999999854
No 129
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=30.82 E-value=60 Score=20.54 Aligned_cols=29 Identities=7% Similarity=0.046 Sum_probs=26.1
Q ss_pred hCCCCHHHHHhhcCCChhHHHHHHHHHHH
Q 043012 87 ASGLTWREMMMDCALDDGDLARLLRRTID 115 (151)
Q Consensus 87 a~G~~f~eil~~t~l~EGdiVR~~rRl~e 115 (151)
..+.+..+|.+..+++.+.+-|.+++|.+
T Consensus 32 ~~~~~~~ela~~l~is~~tv~~~l~~L~~ 60 (114)
T 2oqg_A 32 RADQSASSLATRLPVSRQAIAKHLNALQA 60 (114)
T ss_dssp HSCBCHHHHHHHSSSCHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 35689999999999999999999999976
No 130
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=30.70 E-value=37 Score=20.57 Aligned_cols=32 Identities=16% Similarity=0.344 Sum_probs=25.0
Q ss_pred HHhhC-CCCHHHHHhhcC----CChhHHHHHHHHHHH
Q 043012 84 EAWAS-GLTWREMMMDCA----LDDGDLARLLRRTID 115 (151)
Q Consensus 84 ~~Wa~-G~~f~eil~~t~----l~EGdiVR~~rRl~e 115 (151)
+-|.. +.+-.+|.+... +..+++-|.+.||.+
T Consensus 17 ~L~~~~~~t~~ei~~~l~~~~~~s~~Tv~~~l~rL~~ 53 (82)
T 1p6r_A 17 VIWKHSSINTNEVIKELSKTSTWSPKTIQTMLLRLIK 53 (82)
T ss_dssp HHHTSSSEEHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred HHHcCCCCCHHHHHHHHhhcCCccHHHHHHHHHHHHH
Confidence 44544 478888888764 788999999999986
No 131
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=29.15 E-value=66 Score=21.74 Aligned_cols=28 Identities=25% Similarity=0.269 Sum_probs=25.7
Q ss_pred CCCHHHHHhhcCCChhHHHHHHHHHHHH
Q 043012 89 GLTWREMMMDCALDDGDLARLLRRTIDL 116 (151)
Q Consensus 89 G~~f~eil~~t~l~EGdiVR~~rRl~el 116 (151)
..|+.+|.+..++++..+-|.+++|.+-
T Consensus 23 ~~s~~ela~~lg~s~~tv~~~l~~L~~~ 50 (151)
T 2dbb_A 23 RLTYRELADILNTTRQRIARRIDKLKKL 50 (151)
T ss_dssp TCCHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 4899999999999999999999999874
No 132
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=29.01 E-value=81 Score=20.39 Aligned_cols=35 Identities=9% Similarity=0.156 Sum_probs=30.8
Q ss_pred CCCCHHHHHhhcCCChhHHHHHHHHHHHHHhhcCC
Q 043012 88 SGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPK 122 (151)
Q Consensus 88 ~G~~f~eil~~t~l~EGdiVR~~rRl~elLrQl~~ 122 (151)
.|.|+.||-+..+++.+.+=....|...-||+...
T Consensus 38 e~~s~~EIA~~lgiS~~tVr~~~~rAlkkLR~~~~ 72 (99)
T 3t72_q 38 TDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSR 72 (99)
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999998888888888887544
No 133
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=28.93 E-value=1.1e+02 Score=18.97 Aligned_cols=30 Identities=20% Similarity=0.131 Sum_probs=26.7
Q ss_pred hCCCCHHHHHhhcCCChhHHHHHHHHHHHH
Q 043012 87 ASGLTWREMMMDCALDDGDLARLLRRTIDL 116 (151)
Q Consensus 87 a~G~~f~eil~~t~l~EGdiVR~~rRl~el 116 (151)
..+.++.+|.+..+++...+-|.+++|.+.
T Consensus 41 ~~~~~~~eLa~~l~is~~tv~~~L~~L~~~ 70 (96)
T 1y0u_A 41 DKGRSEEEIMQTLSLSKKQLDYHLKVLEAG 70 (96)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 467999999999999999999999988763
No 134
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=28.89 E-value=59 Score=21.55 Aligned_cols=28 Identities=4% Similarity=0.139 Sum_probs=25.6
Q ss_pred CCCHHHHHhhcCCChhHHHHHHHHHHHH
Q 043012 89 GLTWREMMMDCALDDGDLARLLRRTIDL 116 (151)
Q Consensus 89 G~~f~eil~~t~l~EGdiVR~~rRl~el 116 (151)
..|+.+|.+..++++..+-|.+++|.+.
T Consensus 18 ~~~~~ela~~lg~s~~tv~~~l~~L~~~ 45 (141)
T 1i1g_A 18 RTPFTEIAKKLGISETAVRKRVKALEEK 45 (141)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 4899999999999999999999999873
No 135
>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* 4e20_A* 4e1z_A*
Probab=28.51 E-value=18 Score=27.44 Aligned_cols=44 Identities=9% Similarity=0.073 Sum_probs=38.7
Q ss_pred HHHHHHhhCCCCHHHHHhhcCCChhHHHHHHHHHHHHHhhcCCC
Q 043012 80 SGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKL 123 (151)
Q Consensus 80 ~~~v~~Wa~G~~f~eil~~t~l~EGdiVR~~rRl~elLrQl~~a 123 (151)
..+|+.|+.|.++.+.+....+.+-.+.++++++.+.|..+...
T Consensus 110 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~i~~~l~~~l~~LH~~ 153 (318)
T 3lxp_A 110 LQLVMEYVPLGSLRDYLPRHSIGLAQLLLFAQQICEGMAYLHAQ 153 (318)
T ss_dssp EEEEECCCTTCBHHHHGGGSCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEEEecccCCcHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhC
Confidence 44678899999999999999999999999999999999887543
No 136
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=28.38 E-value=49 Score=21.40 Aligned_cols=32 Identities=16% Similarity=0.411 Sum_probs=26.3
Q ss_pred HHhhC-CCCHHHHHhhcC----CChhHHHHHHHHHHH
Q 043012 84 EAWAS-GLTWREMMMDCA----LDDGDLARLLRRTID 115 (151)
Q Consensus 84 ~~Wa~-G~~f~eil~~t~----l~EGdiVR~~rRl~e 115 (151)
+-|.+ |.|-.+|.+... +..+++-+.+.||++
T Consensus 18 ~L~~~~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~ 54 (126)
T 1sd4_A 18 IIWDKKSVSANEIVVEIQKYKEVSDKTIRTLITRLYK 54 (126)
T ss_dssp HHHHSSSEEHHHHHHHHHTTSCCCHHHHHHHHHHHHH
T ss_pred HHHhcCCCCHHHHHHHHhhcCCCChhhHHHHHHHHHH
Confidence 55655 489999998875 689999999999987
No 137
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=28.32 E-value=1.2e+02 Score=19.95 Aligned_cols=28 Identities=4% Similarity=0.086 Sum_probs=25.2
Q ss_pred CCCCHHHHHhhcCCChhHHHHHHHHHHH
Q 043012 88 SGLTWREMMMDCALDDGDLARLLRRTID 115 (151)
Q Consensus 88 ~G~~f~eil~~t~l~EGdiVR~~rRl~e 115 (151)
.+.+..+|.+..+++.+.+-|.+++|.+
T Consensus 21 ~~~~~~ela~~l~vs~~tvs~~l~~Le~ 48 (142)
T 1on2_A 21 GYARVSDIAEALAVHPSSVTKMVQKLDK 48 (142)
T ss_dssp SSCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 5688999999999999999999999987
No 138
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=27.93 E-value=62 Score=21.95 Aligned_cols=28 Identities=14% Similarity=0.185 Sum_probs=25.6
Q ss_pred CCCHHHHHhhcCCChhHHHHHHHHHHHH
Q 043012 89 GLTWREMMMDCALDDGDLARLLRRTIDL 116 (151)
Q Consensus 89 G~~f~eil~~t~l~EGdiVR~~rRl~el 116 (151)
..|+.+|.+..++++..+-|.+++|.+.
T Consensus 21 ~~s~~ela~~lg~s~~tv~~~l~~L~~~ 48 (151)
T 2cyy_A 21 KAPLREISKITGLAESTIHERIRKLRES 48 (151)
T ss_dssp TCCHHHHHHHHCSCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 4899999999999999999999999774
No 139
>3iuo_A ATP-dependent DNA helicase RECQ; C-terminal, GI PSI, MCSG, structural genomics, midwest center for structur genomics; 1.60A {Porphyromonas gingivalis}
Probab=27.83 E-value=1.4e+02 Score=19.93 Aligned_cols=37 Identities=11% Similarity=0.145 Sum_probs=29.8
Q ss_pred hHHHHHHHhhCCCCHHHHHhhcCCChhHHHHHHHHHH
Q 043012 78 QFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTI 114 (151)
Q Consensus 78 ~l~~~v~~Wa~G~~f~eil~~t~l~EGdiVR~~rRl~ 114 (151)
.-......|-+|.|+.+|-..-++..++|..-+-++.
T Consensus 21 t~~~t~~l~~~G~sleeIA~~R~L~~~TI~~Hl~~~v 57 (122)
T 3iuo_A 21 MKVSIVQQIDRKVALDDIAVSHGLDFPELLSEVETIV 57 (122)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHcCCCHHHHHHHcCCCHHHHHHHHHHHH
Confidence 3345556789999999999999999999987766653
No 140
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=27.58 E-value=61 Score=22.83 Aligned_cols=28 Identities=11% Similarity=0.096 Sum_probs=25.5
Q ss_pred CCCHHHHHhhcCCChhHHHHHHHHHHHH
Q 043012 89 GLTWREMMMDCALDDGDLARLLRRTIDL 116 (151)
Q Consensus 89 G~~f~eil~~t~l~EGdiVR~~rRl~el 116 (151)
..|+.+|.+..++++..+-|.++||.+-
T Consensus 31 ~~s~~eLA~~lglS~~tv~~~l~~L~~~ 58 (171)
T 2ia0_A 31 RLTISELSEQLKKPESTIHFRIKKLQER 58 (171)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 3799999999999999999999999763
No 141
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=27.57 E-value=66 Score=21.66 Aligned_cols=27 Identities=19% Similarity=0.202 Sum_probs=25.1
Q ss_pred CCCHHHHHhhcCCChhHHHHHHHHHHH
Q 043012 89 GLTWREMMMDCALDDGDLARLLRRTID 115 (151)
Q Consensus 89 G~~f~eil~~t~l~EGdiVR~~rRl~e 115 (151)
..|+.+|.+..++++..+-|.+++|.+
T Consensus 19 ~~s~~ela~~lg~s~~tv~~~l~~L~~ 45 (144)
T 2cfx_A 19 RLSMRELGRKIKLSPPSVTERVRQLES 45 (144)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 489999999999999999999999976
No 142
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=27.14 E-value=64 Score=21.89 Aligned_cols=28 Identities=4% Similarity=0.088 Sum_probs=25.8
Q ss_pred CCCHHHHHhhcCCChhHHHHHHHHHHHH
Q 043012 89 GLTWREMMMDCALDDGDLARLLRRTIDL 116 (151)
Q Consensus 89 G~~f~eil~~t~l~EGdiVR~~rRl~el 116 (151)
..|+.+|.+..++++..+-|.++||.+.
T Consensus 22 ~~s~~ela~~lg~s~~tv~~~l~~L~~~ 49 (152)
T 2cg4_A 22 RTAYAELAKQFGVSPETIHVRVEKMKQA 49 (152)
T ss_dssp TSCHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 4899999999999999999999999874
No 143
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=26.91 E-value=61 Score=22.44 Aligned_cols=26 Identities=12% Similarity=0.160 Sum_probs=24.6
Q ss_pred CCHHHHHhhcCCChhHHHHHHHHHHH
Q 043012 90 LTWREMMMDCALDDGDLARLLRRTID 115 (151)
Q Consensus 90 ~~f~eil~~t~l~EGdiVR~~rRl~e 115 (151)
.|+.+|-+..++++..+-|.++||.+
T Consensus 18 ~s~~~la~~lg~s~~tv~~rl~~L~~ 43 (162)
T 3i4p_A 18 LAVADLAKKVGLSTTPCWRRIQKMEE 43 (162)
T ss_dssp SCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 69999999999999999999999986
No 144
>1zl8_A LIN-7; heterodimer, alpha helix, scaffold, assembly, specifici signaling, protein binding; NMR {Caenorhabditis elegans} SCOP: a.194.1.1
Probab=26.72 E-value=1e+02 Score=18.01 Aligned_cols=24 Identities=25% Similarity=0.556 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCH
Q 043012 105 DLARLLRRTIDLLAQIPKLPDVDQ 128 (151)
Q Consensus 105 diVR~~rRl~elLrQl~~a~~~~~ 128 (151)
.+.|-+.|.+|||..+.....+++
T Consensus 4 ~L~RDv~RaiELle~lq~sgevp~ 27 (53)
T 1zl8_A 4 NLERDVQRILELMEHVQKTGEVNN 27 (53)
T ss_dssp HHHHHHHHHHHHHHHHGGGSSSTH
T ss_pred cHHHHHHHHHHHHHHHHHcCCCCc
Confidence 467889999999999988776643
No 145
>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A*
Probab=26.50 E-value=20 Score=27.43 Aligned_cols=43 Identities=12% Similarity=0.220 Sum_probs=37.8
Q ss_pred HHHHHHhhCCCCHHHHHhhcCCChhHHHHHHHHHHHHHhhcCC
Q 043012 80 SGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPK 122 (151)
Q Consensus 80 ~~~v~~Wa~G~~f~eil~~t~l~EGdiVR~~rRl~elLrQl~~ 122 (151)
..+|++|+.|.++.+++....+.+..+.+.++++.+-|..+..
T Consensus 117 ~~lv~e~~~~~~L~~~l~~~~l~~~~~~~i~~qi~~~L~~LH~ 159 (321)
T 2c30_A 117 LWVLMEFLQGGALTDIVSQVRLNEEQIATVCEAVLQALAYLHA 159 (321)
T ss_dssp EEEEECCCCSCBHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEecCCCCCHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 4467889999999999999899999999999999998887754
No 146
>3qt9_A Putative uncharacterized protein CPE0426; alpha-alpha six fold, glycoside hydrolase, mannosidase, HYDR; HET: YDR; 2.05A {Clostridium perfringens} SCOP: a.102.1.8 PDB: 3qt3_A* 2nvp_A
Probab=26.48 E-value=42 Score=28.01 Aligned_cols=36 Identities=19% Similarity=0.245 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCCc
Q 043012 106 LARLLRRTIDLLAQIPKLPDVDQRLQKNAVDASNVMDRPP 145 (151)
Q Consensus 106 iVR~~rRl~elLrQl~~a~~~~~~L~~k~~~a~~~i~R~i 145 (151)
.++.++|+.++++++.. +++|++++++..+-|+.+|
T Consensus 235 a~vaL~~~aei~~~l~~----d~~La~~~~~la~eIr~aI 270 (427)
T 3qt9_A 235 AVVALRYISEIAEKVYK----DEELKEKADSLREEIDNAI 270 (427)
T ss_dssp HHHHHHHHHHHHHHTSC----CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcc----CHHHHHHHHHHHHHHHHHH
Confidence 46788999999987753 6788888888877777655
No 147
>2l3i_A Aoxki4A, antimicrobial peptide in spider venom; antimicrobial protein; NMR {Araneae}
Probab=25.85 E-value=45 Score=16.76 Aligned_cols=14 Identities=36% Similarity=0.610 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHhhc
Q 043012 107 ARLLRRTIDLLAQI 120 (151)
Q Consensus 107 VR~~rRl~elLrQl 120 (151)
-|.++|+.-.|||-
T Consensus 15 qrvlkrllamlrqh 28 (30)
T 2l3i_A 15 QRVLKRLLAMLRQH 28 (30)
T ss_dssp HHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHh
Confidence 37889999999984
No 148
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=25.74 E-value=62 Score=20.80 Aligned_cols=29 Identities=7% Similarity=0.092 Sum_probs=25.0
Q ss_pred hCCCCHHHHHhhcC----CChhHHHHHHHHHHH
Q 043012 87 ASGLTWREMMMDCA----LDDGDLARLLRRTID 115 (151)
Q Consensus 87 a~G~~f~eil~~t~----l~EGdiVR~~rRl~e 115 (151)
..+.+..+|.+... +..+.+-|.+.||.+
T Consensus 22 ~~~~t~~ela~~l~~~~~~s~~tv~~~l~~L~~ 54 (123)
T 1okr_A 22 KKYASANNIIEEIQMQKDWSPKTIRTLITRLYK 54 (123)
T ss_dssp HSSEEHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHhccCCCcHhhHHHHHHHHHH
Confidence 45688999988876 789999999999987
No 149
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=25.63 E-value=95 Score=19.83 Aligned_cols=37 Identities=5% Similarity=-0.007 Sum_probs=29.6
Q ss_pred chHHHHHHHhhCCCCHHHHHhhcCCChhHHHHHHHHHHH
Q 043012 77 SQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTID 115 (151)
Q Consensus 77 ~~l~~~v~~Wa~G~~f~eil~~t~l~EGdiVR~~rRl~e 115 (151)
..+...+. ..+.++.+|.+..++..+.+-|.+++|.+
T Consensus 28 ~~IL~~L~--~~~~s~~eLa~~lgis~stvs~~L~~L~~ 64 (108)
T 2kko_A 28 LQILDLLA--QGERAVEAIATATGMNLTTASANLQALKS 64 (108)
T ss_dssp HHHHHHHT--TCCEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHH--cCCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 44444443 25589999999999999999999999986
No 150
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=25.61 E-value=1.2e+02 Score=19.15 Aligned_cols=58 Identities=12% Similarity=0.095 Sum_probs=39.4
Q ss_pred hCCCCHHHHHhhcCCChhHHHHHHHHHHH--HHhhcCCCCC-----CCHHHHHHHHHHHhhcCCC
Q 043012 87 ASGLTWREMMMDCALDDGDLARLLRRTID--LLAQIPKLPD-----VDQRLQKNAVDASNVMDRP 144 (151)
Q Consensus 87 a~G~~f~eil~~t~l~EGdiVR~~rRl~e--lLrQl~~a~~-----~~~~L~~k~~~a~~~i~R~ 144 (151)
..+.++.+|.+..++..+.+-+.+++|.+ ++..-..-.. .++.+.+-++...+.+.++
T Consensus 37 ~~~~~~~ela~~l~is~stvs~~L~~L~~~Glv~~~~~gr~~~y~l~~~~~~~~~~~l~~~~~~~ 101 (106)
T 1r1u_A 37 VSEASVGHISHQLNLSQSNVSHQLKLLKSVHLVKAKRQGQSMIYSLDDIHVATMLKQAIHHANHP 101 (106)
T ss_dssp HCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEESSHHHHHHHHHHHHHHTSC
T ss_pred hCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEeCCEEEEEEChHHHHHHHHHHHHHHhhc
Confidence 35579999999999999999999999986 2322221111 1566666666666655543
No 151
>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} SCOP: d.144.1.0
Probab=25.60 E-value=14 Score=27.03 Aligned_cols=47 Identities=9% Similarity=-0.007 Sum_probs=39.5
Q ss_pred chHHHHHHHhhCCCCHHHHHhhcCCChhHHHHHHHHHHHHHhhcCCC
Q 043012 77 SQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKL 123 (151)
Q Consensus 77 ~~l~~~v~~Wa~G~~f~eil~~t~l~EGdiVR~~rRl~elLrQl~~a 123 (151)
.+...+|.+|+.|.++.+++....+.+..+.++++++.+.|..+...
T Consensus 78 ~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~i~~~l~~~l~~lH~~ 124 (271)
T 3dtc_A 78 EPNLCLVMEFARGGPLNRVLSGKRIPPDILVNWAVQIARGMNYLHDE 124 (271)
T ss_dssp C--CEEEEECCTTEEHHHHHTSSCCCHHHHHHHHHHHHHHHHHHHHS
T ss_pred CCceEEEEEcCCCCCHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhC
Confidence 34455778899999999999988999999999999999999887653
No 152
>3qkx_A Uncharacterized HTH-type transcriptional regulato; structural genomics, joint center for structural genomics; HET: MSE; 2.35A {Haemophilus influenzae}
Probab=25.38 E-value=37 Score=22.82 Aligned_cols=33 Identities=15% Similarity=0.293 Sum_probs=24.3
Q ss_pred CCCCHHHHHhhcCCChhHHHHHHHHHHHHHhhc
Q 043012 88 SGLTWREMMMDCALDDGDLARLLRRTIDLLAQI 120 (151)
Q Consensus 88 ~G~~f~eil~~t~l~EGdiVR~~rRl~elLrQl 120 (151)
.+.|..+|++..+++.|.|-+.+.=-+||+.++
T Consensus 27 ~~~ti~~Ia~~agvs~~t~Y~~F~sK~~L~~~~ 59 (188)
T 3qkx_A 27 NQLSMLKLAKEANVAAGTIYLYFKNKDELLEQF 59 (188)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHSSSHHHHHHHH
T ss_pred ccCCHHHHHHHhCCCcchHHHHcCCHHHHHHHH
Confidence 457888999999999998877666555555443
No 153
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=25.35 E-value=1.7e+02 Score=20.30 Aligned_cols=67 Identities=7% Similarity=0.065 Sum_probs=47.9
Q ss_pred chHHHHHHHhhCCCCHHHHHhh-------cCCChhHHHHHHHHHHHHHhhcCCCCCC---------CHHHHHHHHHHHhh
Q 043012 77 SQFSGMVEAWASGLTWREMMMD-------CALDDGDLARLLRRTIDLLAQIPKLPDV---------DQRLQKNAVDASNV 140 (151)
Q Consensus 77 ~~l~~~v~~Wa~G~~f~eil~~-------t~l~EGdiVR~~rRl~elLrQl~~a~~~---------~~~L~~k~~~a~~~ 140 (151)
..+|+.++.+.+..+..-+.+. ..-.-.+|++++||=...++++.+-... ...+++++.++.++
T Consensus 48 ~eim~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~~~~~Ik~l~~F~g~~dp~~G~d~g~~VR~~AkEl~~l 127 (140)
T 1vdy_A 48 KEFSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSEFRREMQRNSVAVRNLFHYKGHPDPLKGDALNKAVRETAHETISA 127 (140)
T ss_dssp HHHHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHTTHHHHTTTTCCCCCCTTTSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHHHHHHHHHhHHHHHHHHhcCCCCCcccccchhHHHHHHHHHHHHH
Confidence 3566666777666666544433 4445679999999999998888765432 36789999999988
Q ss_pred cCC
Q 043012 141 MDR 143 (151)
Q Consensus 141 i~R 143 (151)
|.=
T Consensus 128 l~d 130 (140)
T 1vdy_A 128 IFS 130 (140)
T ss_dssp HTC
T ss_pred HhC
Confidence 753
No 154
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=25.25 E-value=73 Score=21.88 Aligned_cols=27 Identities=30% Similarity=0.212 Sum_probs=25.1
Q ss_pred CCHHHHHhhcCCChhHHHHHHHHHHHH
Q 043012 90 LTWREMMMDCALDDGDLARLLRRTIDL 116 (151)
Q Consensus 90 ~~f~eil~~t~l~EGdiVR~~rRl~el 116 (151)
.|+.+|.+..++++..+-|.+++|.+.
T Consensus 25 ~s~~ela~~lg~s~~tv~~~l~~L~~~ 51 (162)
T 2p5v_A 25 LTNVELSERVALSPSPCLRRLKQLEDA 51 (162)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 799999999999999999999999874
No 155
>3p2c_A Putative glycosyl hydrolase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; HET: MSE PGE; 1.60A {Bacteroides ovatus} SCOP: a.102.1.8 PDB: 3on6_A*
Probab=24.64 E-value=48 Score=28.00 Aligned_cols=36 Identities=19% Similarity=0.341 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCCc
Q 043012 106 LARLLRRTIDLLAQIPKLPDVDQRLQKNAVDASNVMDRPP 145 (151)
Q Consensus 106 iVR~~rRl~elLrQl~~a~~~~~~L~~k~~~a~~~i~R~i 145 (151)
.++.++++.++++++.. +.+|++++++..+-||.+|
T Consensus 263 a~v~L~~aaei~~~l~~----d~~la~~~~~lA~eIr~gI 298 (463)
T 3p2c_A 263 AVSSLRKAAEILEKVNK----KTALSKECKDLAQEVETAL 298 (463)
T ss_dssp HHHHHHHHHHHHHHTSC----CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcc----CHHHHHHHHHHHHHHHHHH
Confidence 46788999999987753 6788888888888877765
No 156
>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} SCOP: d.144.1.7
Probab=24.43 E-value=23 Score=26.75 Aligned_cols=45 Identities=9% Similarity=0.136 Sum_probs=40.0
Q ss_pred HHHHHHHhhCCCCHHHHHhhcCCChhHHHHHHHHHHHHHhhcCCC
Q 043012 79 FSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKL 123 (151)
Q Consensus 79 l~~~v~~Wa~G~~f~eil~~t~l~EGdiVR~~rRl~elLrQl~~a 123 (151)
...+|.+|+.|.++.+.++...+.+..+.+.+.++..-|..+...
T Consensus 109 ~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~i~~~i~~~l~~lH~~ 153 (337)
T 3mdy_A 109 QLYLITDYHENGSLYDYLKSTTLDAKSMLKLAYSSVSGLCHLHTE 153 (337)
T ss_dssp EEEEEECCCTTCBHHHHHHHCCBCHHHHHHHHHHHHHHHHHHHSC
T ss_pred ceEEEEeccCCCcHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 445788899999999999999999999999999999999988654
No 157
>2qtq_A Transcriptional regulator, TETR family; transcription regulator, DNA/RNA-binding 3-helical bundle FO turn helix motif, HTH motif; HET: MSE; 1.85A {Novosphingobium aromaticivorans} PDB: 2rha_A*
Probab=24.19 E-value=53 Score=22.47 Aligned_cols=33 Identities=12% Similarity=0.247 Sum_probs=26.1
Q ss_pred CCCCHHHHHhhcCCChhHHHHHHHHHHHHHhhc
Q 043012 88 SGLTWREMMMDCALDDGDLARLLRRTIDLLAQI 120 (151)
Q Consensus 88 ~G~~f~eil~~t~l~EGdiVR~~rRl~elLrQl 120 (151)
.|.|..+|.+..+++.|.|-+.+.--+||+..+
T Consensus 35 ~~~t~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~ 67 (213)
T 2qtq_A 35 VDISLSELSLRSGLNSALVKYYFGNKAGLLKAL 67 (213)
T ss_dssp SCCCHHHHHHHHCCCHHHHHHHHSSHHHHHHHH
T ss_pred ccccHHHHHHHhCCChhhHhHhcCCHHHHHHHH
Confidence 467888999999999999888877766666655
No 158
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=24.08 E-value=1.2e+02 Score=18.11 Aligned_cols=51 Identities=10% Similarity=0.118 Sum_probs=33.5
Q ss_pred HHHcCCCCCCCCCchHHHHHHHhh-CCCCHHHHHhhc-----CCChhHHHHHHHHHHH
Q 043012 64 QEKHGVEIPCCLDSQFSGMVEAWA-SGLTWREMMMDC-----ALDDGDLARLLRRTID 115 (151)
Q Consensus 64 ~~~~~l~~~~~~~~~l~~~v~~Wa-~G~~f~eil~~t-----~l~EGdiVR~~rRl~e 115 (151)
.+++|+..++. ...+..++..-- ...|..||.+.. +++..++=|.+..|.+
T Consensus 8 l~~~g~~~t~~-r~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~ 64 (83)
T 2fu4_A 8 LKKAGLKVTLP-RLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDD 64 (83)
T ss_dssp HHHTTCCCCHH-HHHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred HHHcCCCcCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHH
Confidence 45677665522 133444443222 357899999987 8999998888887776
No 159
>2asw_A Hypothetical protein AF1503; homodimer, parallel coiled-coil, complementary X-DA packing, unknown function; NMR {Archaeoglobus fulgidus} SCOP: a.274.1.1 PDB: 2asx_A
Probab=23.99 E-value=57 Score=16.98 Aligned_cols=16 Identities=31% Similarity=0.287 Sum_probs=10.1
Q ss_pred hHHHHHHHHHHHHHhh
Q 043012 104 GDLARLLRRTIDLLAQ 119 (151)
Q Consensus 104 GdiVR~~rRl~elLrQ 119 (151)
|.+.+.+.++.+-|++
T Consensus 38 ~~l~~~~n~m~~~l~~ 53 (56)
T 2asw_A 38 GILAKSIERLRRSLKV 53 (56)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5666666666666554
No 160
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=23.80 E-value=75 Score=22.38 Aligned_cols=28 Identities=14% Similarity=0.185 Sum_probs=25.4
Q ss_pred CCCHHHHHhhcCCChhHHHHHHHHHHHH
Q 043012 89 GLTWREMMMDCALDDGDLARLLRRTIDL 116 (151)
Q Consensus 89 G~~f~eil~~t~l~EGdiVR~~rRl~el 116 (151)
..|+.+|.+..++++..+-|.++||.+-
T Consensus 41 ~~s~~eLA~~lglS~~tv~~rl~~L~~~ 68 (171)
T 2e1c_A 41 KAPLREISKITGLAESTIHERIRKLRES 68 (171)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 3899999999999999999999999773
No 161
>3bqz_B HTH-type transcriptional regulator QACR; multidrug resistance, TETR, malachite green, DNA- binding, plasmid, repressor; HET: MGR; 2.17A {Staphylococcus aureus} PDB: 3br1_B* 3br3_B* 3pm1_B* 1rkw_B* 1jt0_A* 1jty_B* 1jum_B* 1jup_B* 1jtx_B* 1jus_B* 2dtz_B 2gby_B* 2hq5_B 3br2_B* 3br5_B* 1qvt_B* 1qvu_B* 3br0_B* 3br6_B* 1jt6_B* ...
Probab=23.73 E-value=50 Score=22.26 Aligned_cols=33 Identities=18% Similarity=0.213 Sum_probs=25.0
Q ss_pred CCCCHHHHHhhcCCChhHHHHHHHHHHHHHhhc
Q 043012 88 SGLTWREMMMDCALDDGDLARLLRRTIDLLAQI 120 (151)
Q Consensus 88 ~G~~f~eil~~t~l~EGdiVR~~rRl~elLrQl 120 (151)
.+.|..+|.+.++++.|.|-+.+.=-+||+..+
T Consensus 21 ~~~ti~~Ia~~agvs~~t~Y~~F~sK~~L~~~~ 53 (194)
T 3bqz_B 21 NATTTGEIVKLSESSKGNLYYHFKTKENLFLEI 53 (194)
T ss_dssp TTCCHHHHHHHTTCCHHHHHHHTSSHHHHHHHH
T ss_pred ccCCHHHHHHHhCCCchhHHHhCCCHHHHHHHH
Confidence 567888999999999998877766666655554
No 162
>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A*
Probab=23.35 E-value=17 Score=27.14 Aligned_cols=44 Identities=16% Similarity=0.229 Sum_probs=38.2
Q ss_pred HHHHHHhhCCCCHHHHHhhcCCChhHHHHHHHHHHHHHhhcCCC
Q 043012 80 SGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKL 123 (151)
Q Consensus 80 ~~~v~~Wa~G~~f~eil~~t~l~EGdiVR~~rRl~elLrQl~~a 123 (151)
..+|+.|+.|.++.+++....+.+..+.+.++++.+.|..+...
T Consensus 95 ~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~ 138 (303)
T 3a7i_A 95 LWIIMEYLGGGSALDLLEPGPLDETQIATILREILKGLDYLHSE 138 (303)
T ss_dssp EEEEEECCTTEEHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEEEEeCCCCcHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC
Confidence 34678899999999999988999999999999999999887543
No 163
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=23.32 E-value=84 Score=20.60 Aligned_cols=29 Identities=7% Similarity=0.076 Sum_probs=25.1
Q ss_pred CCCCHHHHHhhcCCChhHHHHHHHHHHHH
Q 043012 88 SGLTWREMMMDCALDDGDLARLLRRTIDL 116 (151)
Q Consensus 88 ~G~~f~eil~~t~l~EGdiVR~~rRl~el 116 (151)
.+.+..+|.+..++....+-|.+++|.+-
T Consensus 30 ~~~s~~ela~~l~is~~tv~~~l~~Le~~ 58 (139)
T 2x4h_A 30 EGAKINRIAKDLKIAPSSVFEEVSHLEEK 58 (139)
T ss_dssp SCBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCcCHHHHHHHhCCChHHHHHHHHHHHHC
Confidence 34689999999999999999999999874
No 164
>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 4asx_A* 2qlu_A*
Probab=23.10 E-value=25 Score=26.70 Aligned_cols=43 Identities=9% Similarity=0.084 Sum_probs=39.0
Q ss_pred HHHHHhhCCCCHHHHHhhcCCChhHHHHHHHHHHHHHhhcCCC
Q 043012 81 GMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKL 123 (151)
Q Consensus 81 ~~v~~Wa~G~~f~eil~~t~l~EGdiVR~~rRl~elLrQl~~a 123 (151)
.+|.+++.|.++.+.+....+.+..+.+.++++.+-|..+...
T Consensus 98 ~lv~e~~~~g~L~~~l~~~~~~~~~~~~i~~qi~~al~~LH~~ 140 (322)
T 3soc_A 98 WLITAFHEKGSLSDFLKANVVSWNELCHIAETMARGLAYLHED 140 (322)
T ss_dssp EEEEECCTTCBHHHHHHHCCBCHHHHHHHHHHHHHHHHHHTCC
T ss_pred EEEEecCCCCCHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 4678899999999999999999999999999999999988654
No 165
>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A*
Probab=22.84 E-value=23 Score=26.19 Aligned_cols=42 Identities=12% Similarity=0.066 Sum_probs=38.5
Q ss_pred HHHHHHhhCCCCHHHHHhhcCCChhHHHHHHHHHHHHHhhcC
Q 043012 80 SGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIP 121 (151)
Q Consensus 80 ~~~v~~Wa~G~~f~eil~~t~l~EGdiVR~~rRl~elLrQl~ 121 (151)
..+|..++.|.++.+.++...+.+..+.+.+.++.+-|..+.
T Consensus 81 ~~lv~e~~~~g~L~~~l~~~~~~~~~~~~i~~~i~~~l~~lH 122 (301)
T 3q4u_A 81 LWLITHYHEMGSLYDYLQLTTLDTVSCLRIVLSIASGLAHLH 122 (301)
T ss_dssp EEEEECCCTTCBHHHHHTTCCBCHHHHHHHHHHHHHHHHHHH
T ss_pred eEEehhhccCCCHHHHHhhcccCHHHHHHHHHHHHHHHHHHH
Confidence 457788999999999999999999999999999999999887
No 166
>3frw_A Putative Trp repressor protein; structural genomics, APC21159, PSI-2, P structure initiative; 2.05A {Ruminococcus obeum atcc 29174} PDB: 3g1c_A
Probab=22.80 E-value=1.5e+02 Score=19.88 Aligned_cols=33 Identities=9% Similarity=0.160 Sum_probs=26.6
Q ss_pred HHHHHhhCCCCHHHHHhhcCCChhHHHHHHHHH
Q 043012 81 GMVEAWASGLTWREMMMDCALDDGDLARLLRRT 113 (151)
Q Consensus 81 ~~v~~Wa~G~~f~eil~~t~l~EGdiVR~~rRl 113 (151)
.|+..-.+|.|+.+|.+.|+.+--.|-|.-|-|
T Consensus 50 ~Ia~lL~~G~SyreIa~~tG~StaTIsRv~r~L 82 (107)
T 3frw_A 50 EVAKMLTDKRTYLDISEKTGASTATISRVNRSL 82 (107)
T ss_dssp HHHHHHHTTCCHHHHHHHHCCCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHCccHHHHHHHHHHH
Confidence 344556799999999999999999888866544
No 167
>3f1b_A TETR-like transcriptional regulator; APC5888, rhodococcus SP. RHA1, structural genomics, PS protein structure initiative; 2.40A {Rhodococcus}
Probab=22.77 E-value=46 Score=22.61 Aligned_cols=32 Identities=9% Similarity=0.052 Sum_probs=23.0
Q ss_pred CCCCHHHHHhhcCCChhHHHHHHHHHHHHHhh
Q 043012 88 SGLTWREMMMDCALDDGDLARLLRRTIDLLAQ 119 (151)
Q Consensus 88 ~G~~f~eil~~t~l~EGdiVR~~rRl~elLrQ 119 (151)
.+.|..+|++..++..|.|-+.+.=-++|+..
T Consensus 33 ~~~ti~~Ia~~agvs~~t~Y~~F~sK~~L~~~ 64 (203)
T 3f1b_A 33 HETSMDAIAAKAEISKPMLYLYYGSKDELFAA 64 (203)
T ss_dssp TTCCHHHHHHHTTSCHHHHHHHCCSHHHHHHH
T ss_pred ccccHHHHHHHhCCchHHHHHHhCCHHHHHHH
Confidence 45678889999999998888765554444443
No 168
>3qp6_A CVIR transcriptional regulator; quorum sensing, agonist, antagonist, LUXR, acylated homoseri lactone, transcription factor; HET: HL6; 2.00A {Chromobacterium violaceum} PDB: 3qp5_A*
Probab=22.66 E-value=2.4e+02 Score=21.04 Aligned_cols=45 Identities=13% Similarity=0.041 Sum_probs=38.8
Q ss_pred CCCCchHHHHHHHhhCCCCHHHHHhhcCCChhHHHHHHHHHHHHH
Q 043012 73 CCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLL 117 (151)
Q Consensus 73 ~~~~~~l~~~v~~Wa~G~~f~eil~~t~l~EGdiVR~~rRl~elL 117 (151)
..+.+.-.+++.-.+.|+|-.||-+..+++++++=..+++.-.-|
T Consensus 196 ~~Lt~re~~vl~~~~~G~s~~eIA~~l~is~~TV~~~~~~~~~kl 240 (265)
T 3qp6_A 196 MPLSQREYDIFHWMSRGKTNWEIATILNISERTVKFHVANVIRKL 240 (265)
T ss_dssp CCCCHHHHHHHHHHHTTCCHHHHHHHHTSCHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHh
Confidence 468888899998889999999999999999999888777775544
No 169
>3gzi_A Transcriptional regulator, TETR family; TETR family transcriptional regulator, structural genomics, center for structural genomics, JCSG; 2.05A {Shewanella loihica pv-4}
Probab=22.66 E-value=56 Score=22.55 Aligned_cols=35 Identities=14% Similarity=0.186 Sum_probs=28.3
Q ss_pred CCCCHHHHHhhcCCChhHHHHHHHHHHHHHhhcCC
Q 043012 88 SGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPK 122 (151)
Q Consensus 88 ~G~~f~eil~~t~l~EGdiVR~~rRl~elLrQl~~ 122 (151)
.|.|..+|.+.++++.|.|-+.+.==++|+..+..
T Consensus 36 ~~~t~~~IA~~agvs~~t~Y~~F~sK~~L~~~~~~ 70 (218)
T 3gzi_A 36 AQVSIREIASLAGTDPGLIRYYFGSKEKLFSTMIH 70 (218)
T ss_dssp SCCCHHHHHHHHTSCTHHHHHHHSSHHHHHHHHHH
T ss_pred CcCCHHHHHHHhCCCHHHHHHHcCCHHHHHHHHHH
Confidence 45788899999999999998888877777776644
No 170
>3dew_A Transcriptional regulator, TETR family; S genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 1.75A {Geobacter sulfurreducens}
Probab=22.38 E-value=45 Score=22.60 Aligned_cols=33 Identities=15% Similarity=0.166 Sum_probs=27.0
Q ss_pred CCCCHHHHHhhcCCChhHHHHHHHHHHHHHhhc
Q 043012 88 SGLTWREMMMDCALDDGDLARLLRRTIDLLAQI 120 (151)
Q Consensus 88 ~G~~f~eil~~t~l~EGdiVR~~rRl~elLrQl 120 (151)
.+.|..+|.+.+++..|.|-+.+.=-+||+..+
T Consensus 27 ~~~t~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~ 59 (206)
T 3dew_A 27 YGVSIRELAQAAGASISMISYHFGGKEGLYAAV 59 (206)
T ss_dssp GGCCHHHHHHHHTCCHHHHHHHSCHHHHHHHHH
T ss_pred ccCcHHHHHHHhCCCHHHHHHHcCCHHHHHHHH
Confidence 357888999999999999988888777777665
No 171
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=21.70 E-value=98 Score=20.63 Aligned_cols=34 Identities=21% Similarity=0.271 Sum_probs=28.2
Q ss_pred HHHHhh--CCCCHHHHHhhcC----CChhHHHHHHHHHHH
Q 043012 82 MVEAWA--SGLTWREMMMDCA----LDDGDLARLLRRTID 115 (151)
Q Consensus 82 ~v~~Wa--~G~~f~eil~~t~----l~EGdiVR~~rRl~e 115 (151)
+.+-|. .+.+-.+|.+... +..+++-|.+.||++
T Consensus 15 L~~L~~~~~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~ 54 (138)
T 2g9w_A 15 MDHLWSRTEPQTVRQVHEALSARRDLAYTTVMAVLQRLAK 54 (138)
T ss_dssp HHHHHTCSSCEEHHHHHHHHTTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCCHHHHHHHHhccCCCCHHHHHHHHHHHHH
Confidence 346675 4689999999876 899999999999987
No 172
>2oa4_A SIR5; structure, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Silicibacter pomeroyi} SCOP: a.4.12.3
Probab=21.29 E-value=1.7e+02 Score=19.27 Aligned_cols=36 Identities=11% Similarity=0.049 Sum_probs=30.2
Q ss_pred HHHHHHHhhCCCCHHHHHhhcCCChhHHHHHHHHHH
Q 043012 79 FSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTI 114 (151)
Q Consensus 79 l~~~v~~Wa~G~~f~eil~~t~l~EGdiVR~~rRl~ 114 (151)
+.-|-+-...+.|..|.++.-++.+..|-+|.+...
T Consensus 40 ~~VV~~v~~g~lS~~EAa~ry~Is~~ei~~W~r~y~ 75 (101)
T 2oa4_A 40 IAVVRGVIYGLITLAEAKQTYGLSDEEFNSWVSALA 75 (101)
T ss_dssp HHHHHHHHHTTCCHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 334447778889999999999999999999998764
No 173
>2kxh_B Peptide of FAR upstream element-binding protein 1; RRM, FIR, FBP, protein-protein complex, protein binding; NMR {Homo sapiens}
Probab=21.28 E-value=98 Score=16.04 Aligned_cols=20 Identities=0% Similarity=-0.052 Sum_probs=15.8
Q ss_pred CchhHHHHHHHHHHHHHHHH
Q 043012 42 PSTTVINVINVLDEHRSSFL 61 (151)
Q Consensus 42 ~~~~l~~~~~~l~~~~~~l~ 61 (151)
..+.+.+++++.++|+.++.
T Consensus 6 ~~daFadA~~RaRQIaAKig 25 (31)
T 2kxh_B 6 VNDAFKDALQRARQIAAKIG 25 (31)
T ss_dssp CSSHHHHHHHHHHHHHHHTT
T ss_pred chHHHHHHHHHHHHHHHHhc
Confidence 45778899999999887763
No 174
>3o0g_D Cyclin-dependent kinase 5 activator 1; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: a.74.1.1 PDB: 1h4l_D
Probab=21.13 E-value=69 Score=22.61 Aligned_cols=19 Identities=21% Similarity=-0.050 Sum_probs=16.4
Q ss_pred hcCCChhHHHHHHHHHHHH
Q 043012 98 DCALDDGDLARLLRRTIDL 116 (151)
Q Consensus 98 ~t~l~EGdiVR~~rRl~el 116 (151)
..++++||+|.|+|-++--
T Consensus 22 l~~~~p~~~V~WlR~VDRs 40 (149)
T 3o0g_D 22 LKHLSPTDPVLWLRSVDRS 40 (149)
T ss_dssp CTTCCTHHHHHHHHHHHHH
T ss_pred hccCCcchhhhhHHhhhHH
Confidence 3589999999999999863
No 175
>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A*
Probab=20.97 E-value=31 Score=25.08 Aligned_cols=46 Identities=13% Similarity=0.189 Sum_probs=37.9
Q ss_pred hHHHHHHHhhCCCCHHHHHhh-----cCCChhHHHHHHHHHHHHHhhcCCC
Q 043012 78 QFSGMVEAWASGLTWREMMMD-----CALDDGDLARLLRRTIDLLAQIPKL 123 (151)
Q Consensus 78 ~l~~~v~~Wa~G~~f~eil~~-----t~l~EGdiVR~~rRl~elLrQl~~a 123 (151)
+...+|.+|+.|.++.+.+.. ..+.+..+.+.++++.+-|..+...
T Consensus 84 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~al~~lH~~ 134 (289)
T 1x8b_A 84 DHMLIQNEYCNGGSLADAISENYRIMSYFKEAELKDLLLQVGRGLRYIHSM 134 (289)
T ss_dssp TEEEEEEECCTTCBHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred CeEEEEEEecCCCcHHHHHHhhcccccCCCHHHHHHHHHHHHHHHHHHHhC
Confidence 344567889999999999986 4589999999999999999887543
No 176
>3nul_A Profilin I; cytoskeleton, actin binding protein; HET: MSE; 1.60A {Arabidopsis thaliana} SCOP: d.110.1.1 PDB: 1a0k_A 1cqa_A 1g5u_A
Probab=20.97 E-value=61 Score=22.08 Aligned_cols=18 Identities=17% Similarity=0.340 Sum_probs=15.9
Q ss_pred CCCCCCHHHHHHHHHHhh
Q 043012 7 ILLDLKPAQLAAVCASLV 24 (151)
Q Consensus 7 ~f~~L~p~elAAllS~~v 24 (151)
-|..++|+|+.+++.+|-
T Consensus 37 gf~~~~p~E~~~i~~~f~ 54 (130)
T 3nul_A 37 KFPQLKPQEIDGIKKDFE 54 (130)
T ss_dssp TCCCCCHHHHHHHHHHHH
T ss_pred CcccCCHHHHHHHHHhcc
Confidence 378899999999999885
No 177
>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} SCOP: d.144.1.0 PDB: 3kmw_A* 3rep_A*
Probab=20.80 E-value=31 Score=24.92 Aligned_cols=46 Identities=9% Similarity=0.181 Sum_probs=39.4
Q ss_pred hHHHHHHHhhCCCCHHHHHhhcC---CChhHHHHHHHHHHHHHhhcCCC
Q 043012 78 QFSGMVEAWASGLTWREMMMDCA---LDDGDLARLLRRTIDLLAQIPKL 123 (151)
Q Consensus 78 ~l~~~v~~Wa~G~~f~eil~~t~---l~EGdiVR~~rRl~elLrQl~~a 123 (151)
+...++..|+.|.++.+.+.... +.+-.+.+++.++.+-|..+...
T Consensus 82 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~ 130 (271)
T 3kmu_A 82 PHPTLITHWMPYGSLYNVLHEGTNFVVDQSQAVKFALDMARGMAFLHTL 130 (271)
T ss_dssp SSCEEEEECCTTCBHHHHHHSCSSCCCCHHHHHHHHHHHHHHHHHHTTS
T ss_pred CCeEeeecccCCCcHHHHHhhcccCCCCHHHHHHHHHHHHHHHHHHhcC
Confidence 44457888999999999998764 89999999999999999988763
No 178
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=20.36 E-value=2.4e+02 Score=20.03 Aligned_cols=69 Identities=9% Similarity=-0.083 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCchHHHHHHHhh--C--CCCHHHHHhhcCCChhHHHHHHHHHHHHHhhc
Q 043012 52 VLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWA--S--GLTWREMMMDCALDDGDLARLLRRTIDLLAQI 120 (151)
Q Consensus 52 ~l~~~~~~l~~~~~~~~l~~~~~~~~~l~~~v~~Wa--~--G~~f~eil~~t~l~EGdiVR~~rRl~elLrQl 120 (151)
.+.+.+..+.+...+.++-....+..=.+.++|.-+ . ..+..+|.+.+++.+++|=++.+.+.+-+...
T Consensus 118 ~~~~~A~~i~~~~~~~~l~~g~~P~~IAaAaiylA~~~~~~~~~~~~i~~~~~v~~~tI~~~~~~l~~~l~~~ 190 (207)
T 1c9b_A 118 QVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQASAEKRTQKEIGDIAGVADVTIRQSYRLIYPRAPDL 190 (207)
T ss_dssp HHHHHHHHHHHHHHHTTCSTTCCHHHHHHHHHHHHHHTSSSCCCHHHHHHHHTCCHHHHHHHHHHHGGGHHHH
T ss_pred HHHHHHHHHHHHHHHcCccCCCChHHHHHHHHHHHHHHHCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHh
Confidence 344555666655555554333333222233344443 2 35788999999999999999998888776654
No 179
>3pgb_A Putative uncharacterized protein; oxidoreductase, copper amine oxidase, CAO, topaquinone, TPQ; HET: TPQ NAG BMA MAN; 2.45A {Emericella nidulans}
Probab=20.35 E-value=63 Score=29.18 Aligned_cols=24 Identities=17% Similarity=0.224 Sum_probs=20.6
Q ss_pred ccCCCCCCCHHHHHHHHHHhhccc
Q 043012 4 RNKILLDLKPAQLAAVCASLVSEG 27 (151)
Q Consensus 4 ~~g~f~~L~p~elAAllS~~v~e~ 27 (151)
..++|.+|+++|++||.+-|..+.
T Consensus 64 ~~~vfadLs~~E~~aV~~~L~~~~ 87 (797)
T 3pgb_A 64 KENVWYGLTDDETADVAKWLFGRP 87 (797)
T ss_dssp SCCSSSCCCHHHHHHHHHHHHTCT
T ss_pred CCCcccccCHHHHHHHHHHHhcCC
Confidence 368999999999999999877654
No 180
>2zcm_A Biofilm operon icaabcd HTH-type negative transcri regulator ICAR; helix-turn-helix, TETR family, repressor; 1.33A {Staphylococcus epidermidis} PDB: 2zcn_A
Probab=20.33 E-value=61 Score=22.00 Aligned_cols=32 Identities=9% Similarity=0.175 Sum_probs=21.8
Q ss_pred CCCCHHHHHhhcCCChhHHHHHHHHHHHHHhh
Q 043012 88 SGLTWREMMMDCALDDGDLARLLRRTIDLLAQ 119 (151)
Q Consensus 88 ~G~~f~eil~~t~l~EGdiVR~~rRl~elLrQ 119 (151)
.|.|..+|.+..+++.|.|-+.+.=-++|+..
T Consensus 26 ~~~t~~~IA~~agvs~~tlY~~F~sK~~L~~a 57 (192)
T 2zcm_A 26 DGTTLDDISKSVNIKKASLYYHYDNKEEIYRK 57 (192)
T ss_dssp TTCCHHHHHHHTTCCHHHHHHHTCCHHHHHHH
T ss_pred ccCCHHHHHHHhCCChHHHHHHCCCHHHHHHH
Confidence 35677788888888888877766555555544
No 181
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=20.23 E-value=1.4e+02 Score=17.86 Aligned_cols=29 Identities=17% Similarity=-0.023 Sum_probs=25.1
Q ss_pred CCCCHHHHHhhcCCChhHHHHHHHHHHHH
Q 043012 88 SGLTWREMMMDCALDDGDLARLLRRTIDL 116 (151)
Q Consensus 88 ~G~~f~eil~~t~l~EGdiVR~~rRl~el 116 (151)
.+.+..||.+..+++...+-|.+++|.+.
T Consensus 13 ~~~s~~eLa~~lgvs~~tv~r~L~~L~~~ 41 (81)
T 2htj_A 13 NGGKTAEIAEALAVTDYQARYYLLLLEKA 41 (81)
T ss_dssp CCCCHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 34899999999999999999988888763
No 182
>2p0v_A Hypothetical protein BT3781; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacteroides thetaiotaomicron vpi-5482} SCOP: a.102.1.8
Probab=20.10 E-value=66 Score=27.32 Aligned_cols=37 Identities=14% Similarity=0.275 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCCc
Q 043012 105 DLARLLRRTIDLLAQIPKLPDVDQRLQKNAVDASNVMDRPP 145 (151)
Q Consensus 105 diVR~~rRl~elLrQl~~a~~~~~~L~~k~~~a~~~i~R~i 145 (151)
-.+..++++.++++++.. +++|++++++..+.|+.+|
T Consensus 280 ~a~v~L~~aaeia~~v~~----d~~la~~~~~lA~eI~~gI 316 (489)
T 2p0v_A 280 FAVTSLRKAAEILNTVNR----KPALAKECTALADEVEKAL 316 (489)
T ss_dssp HHHHHHHHHHHHHHHTSC----CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcc----CHHHHHHHHHHHHHHHHHH
Confidence 367889999999998763 6788888888888877765
No 183
>3c2b_A Transcriptional regulator, TETR family; structural genomics, APC5923, PSI-2, PR structure initiative; 2.10A {Agrobacterium tumefaciens str}
Probab=20.09 E-value=54 Score=22.75 Aligned_cols=33 Identities=18% Similarity=0.158 Sum_probs=27.4
Q ss_pred CCCCHHHHHhhcCCChhHHHHHHHHHHHHHhhc
Q 043012 88 SGLTWREMMMDCALDDGDLARLLRRTIDLLAQI 120 (151)
Q Consensus 88 ~G~~f~eil~~t~l~EGdiVR~~rRl~elLrQl 120 (151)
.|.|..+|.+.+++..|.|-+.+.=-+||+..+
T Consensus 34 ~~~s~~~IA~~agvs~~t~Y~~F~sKe~L~~~~ 66 (221)
T 3c2b_A 34 KALTTSGLARAANCSKESLYKWFGDRDGLLAAM 66 (221)
T ss_dssp GGCCHHHHHHHHTCCHHHHHHHHSSHHHHHHHH
T ss_pred ccCCHHHHHHHhCCCHHHHHHhCCCHHHHHHHH
Confidence 467888999999999999999888777777665
No 184
>3lhq_A Acrab operon repressor (TETR/ACRR family); structural genomics, IDP02616, csgid, DNA-binding, transcription, transcription regulation; 1.56A {Salmonella enterica subsp} PDB: 3bcg_A 2qop_A
Probab=20.05 E-value=52 Score=22.55 Aligned_cols=33 Identities=18% Similarity=0.317 Sum_probs=24.2
Q ss_pred CCCCHHHHHhhcCCChhHHHHHHHHHHHHHhhc
Q 043012 88 SGLTWREMMMDCALDDGDLARLLRRTIDLLAQI 120 (151)
Q Consensus 88 ~G~~f~eil~~t~l~EGdiVR~~rRl~elLrQl 120 (151)
.+.|..+|.+..++..|.|-+.+.=-+||+..+
T Consensus 33 ~~~ti~~Ia~~agvs~~t~Y~~F~sK~~Ll~~~ 65 (220)
T 3lhq_A 33 SATSLAEIANAAGVTRGAIYWHFKNKSDLFSEI 65 (220)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHH
T ss_pred ccCCHHHHHHHhCCCceeehhhcCCHHHHHHHH
Confidence 356788888888888888877766666665554
Done!