BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 043013
         (179 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3FCY|A Chain A, Crystal Structure Of Acetyl Xylan Esterase 1 From
           Thermoanaerobacterium Sp. JwSL YS485
 pdb|3FCY|B Chain B, Crystal Structure Of Acetyl Xylan Esterase 1 From
           Thermoanaerobacterium Sp. JwSL YS485
 pdb|3FCY|C Chain C, Crystal Structure Of Acetyl Xylan Esterase 1 From
           Thermoanaerobacterium Sp. JwSL YS485
          Length = 346

 Score = 27.7 bits (60), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 12/22 (54%), Positives = 15/22 (68%)

Query: 10  VKANKTVVGSDQKGEGGQAQQV 31
           V A  TVV  D +G+GGQ+Q V
Sbjct: 131 VAAGFTVVAMDVRGQGGQSQDV 152


>pdb|3ZNF|A Chain A, High-Resolution Three-Dimensional Structure Of A Single
          Zinc Finger From A Human Enhancer Binding Protein In
          Solution
 pdb|4ZNF|A Chain A, High-Resolution Three-Dimensional Structure Of A Single
          Zinc Finger From A Human Enhancer Binding Protein In
          Solution
          Length = 30

 Score = 26.6 bits (57), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 2/32 (6%)

Query: 61 KPMHWSCALCQVSSTSKRNLDEHLRGKKHKAK 92
          +P H  C+ C  S  +K NL +H++ K H  K
Sbjct: 1  RPYH--CSYCNFSFKTKGNLTKHMKSKAHSKK 30


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.306    0.122    0.346 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,472,253
Number of Sequences: 62578
Number of extensions: 150669
Number of successful extensions: 336
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 333
Number of HSP's gapped (non-prelim): 12
length of query: 179
length of database: 14,973,337
effective HSP length: 93
effective length of query: 86
effective length of database: 9,153,583
effective search space: 787208138
effective search space used: 787208138
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 48 (23.1 bits)