BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043013
(179 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q61329|ZFHX3_MOUSE Zinc finger homeobox protein 3 OS=Mus musculus GN=Zfhx3 PE=1 SV=1
Length = 3726
Score = 36.6 bits (83), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 8/83 (9%)
Query: 64 HWSCALCQVSSTSKRNLDEHLRGKKHKAKE--EGLEREKKHMARSNESKKNDEAVSLTTS 121
++ C LC S+ +K NL +H+R KH+ E L+R +K + +E + S
Sbjct: 1088 YYHCVLCNYSTKAKLNLIQHVRSMKHQRSESLRKLQRLQKGLPEEDEDLGQIFTIRRCPS 1147
Query: 122 TTIVTPLEPTEKVEDEDVVTEES 144
T +P E VED + +E S
Sbjct: 1148 T------DPEEPVEDAEGPSEAS 1164
>sp|Q9C0A1|ZFHX2_HUMAN Zinc finger homeobox protein 2 OS=Homo sapiens GN=ZFHX2 PE=2 SV=3
Length = 2572
Score = 36.2 bits (82), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 21/51 (41%)
Query: 39 GSKQEATTLPADSGKPCSTGSKKPMHWSCALCQVSSTSKRNLDEHLRGKKH 89
G T PA G GS P+H C +C S SK + H RG H
Sbjct: 795 GGGAMGTPSPASLGDGAPYGSVSPLHLRCNICDFESNSKEKMQLHARGAAH 845
Score = 32.0 bits (71), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 65 WSCALCQVSSTSKRNLDEHLRGKKHKAKEEGLE 97
+ C +C S+T+K NL H++ KH A +G +
Sbjct: 508 YRCDVCNYSTTTKGNLSIHMQSDKHLANLQGFQ 540
Score = 30.8 bits (68), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 29/72 (40%), Gaps = 21/72 (29%)
Query: 21 QKGEGGQAQQVKPYPNLCGSKQEATTLPADSGKPCSTGSKKP---MHWSCALCQVSSTSK 77
Q G GGQ GS EA+ P S G K+P W C +C +
Sbjct: 540 QAGPGGQ-----------GSPPEASL-------PPSAGDKEPKTKSSWQCKVCSYETNIS 581
Query: 78 RNLDEHLRGKKH 89
RNL H+ +KH
Sbjct: 582 RNLRIHMTSEKH 593
>sp|O73590|ZFHX4_CHICK Zinc finger homeobox protein 4 OS=Gallus gallus GN=ZFHX4 PE=2 SV=2
Length = 3573
Score = 35.8 bits (81), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 64 HWSCALCQVSSTSKRNLDEHLRGKKHKAKEEGLEREKKH 102
++ CALC S+ K NL +H+R KH+ + EGL + + H
Sbjct: 1016 YYYCALCDYSTKVKLNLVQHVRSVKHQ-QTEGLRKLQLH 1053
Score = 30.0 bits (66), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 23/52 (44%)
Query: 52 GKPCSTGSKKPMHWSCALCQVSSTSKRNLDEHLRGKKHKAKEEGLEREKKHM 103
G P + K+ W C +C + RNL H+ +KH L++ K +
Sbjct: 750 GTPSPSKPKQKPTWRCEVCDYETNVARNLRIHMTSEKHMHNMMLLQQNMKQI 801
>sp|Q15911|ZFHX3_HUMAN Zinc finger homeobox protein 3 OS=Homo sapiens GN=ZFHX3 PE=1 SV=2
Length = 3703
Score = 35.0 bits (79), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 8/75 (10%)
Query: 64 HWSCALCQVSSTSKRNLDEHLRGKKHKAKE--EGLEREKKHMARSNESKKNDEAVSLTTS 121
++ C LC S+ +K NL +H+R KH+ E L+R +K + +E + S
Sbjct: 1087 YYHCVLCNYSTKAKLNLIQHVRSMKHQRSESLRKLQRLQKGLPEEDEDLGQIFTIRRCPS 1146
Query: 122 TTIVTPLEPTEKVED 136
T +P E +ED
Sbjct: 1147 T------DPEEAIED 1155
>sp|Q9C0G0|ZN407_HUMAN Zinc finger protein 407 OS=Homo sapiens GN=ZNF407 PE=1 SV=2
Length = 2248
Score = 35.0 bits (79), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 61 KPMHWSCALCQVSSTSKRNLDEHLRGKKHK 90
+ M + C C SS S+R+LDEHL +H+
Sbjct: 553 REMKFYCRTCDFSSMSRRDLDEHLHSNQHQ 582
>sp|Q8R3F9|STPAP_MOUSE Speckle targeted PIP5K1A-regulated poly(A) polymerase OS=Mus
musculus GN=Tut1 PE=1 SV=1
Length = 869
Score = 34.7 bits (78), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 20/26 (76%)
Query: 65 WSCALCQVSSTSKRNLDEHLRGKKHK 90
+ C LC V++ ++ +LD HL+G+KH+
Sbjct: 16 FRCCLCDVTTANRPSLDAHLKGRKHR 41
>sp|Q9JJN2|ZFHX4_MOUSE Zinc finger homeobox protein 4 OS=Mus musculus GN=Zfhx4 PE=1 SV=1
Length = 3550
Score = 34.3 bits (77), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 65 WSCALCQVSSTSKRNLDEHLRGKKHKAKEEGLEREKKH 102
+ CA+C SS K NL +H+R KH+ + EGL + + H
Sbjct: 1019 YYCAVCDYSSKIKLNLVQHVRSVKHQ-QTEGLRKLQLH 1055
>sp|Q3MHT4|STPAP_RAT Speckle targeted PIP5K1A-regulated poly(A) polymerase OS=Rattus
norvegicus GN=Tut1 PE=2 SV=1
Length = 866
Score = 34.3 bits (77), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 20/26 (76%)
Query: 65 WSCALCQVSSTSKRNLDEHLRGKKHK 90
+ C LC V++ ++ +LD HL+G+KH+
Sbjct: 16 FRCCLCDVTTANRPSLDAHLKGRKHR 41
>sp|O83956|RUBR_TREPA Rubredoxin OS=Treponema pallidum (strain Nichols) GN=TP_0991 PE=3
SV=1
Length = 52
Score = 33.5 bits (75), Expect = 0.75, Method: Composition-based stats.
Identities = 17/42 (40%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 36 NLCGSKQEATTLPADSGKPCSTGSKK-PMHWSCALCQVSSTS 76
+LCG AD G P T + P HW C LC V TS
Sbjct: 7 DLCGWGYNPEVGDADGGIPAGTAFENLPDHWECPLCGVDKTS 48
>sp|Q5REX3|ZFR_PONAB Zinc finger RNA-binding protein OS=Pongo abelii GN=ZFR PE=2 SV=1
Length = 1074
Score = 33.5 bits (75), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 63 MHWSCALCQVSSTSKRNLDEHLRGKKHKAKEEGLE 97
+H+ C +C++S + EHL G+KHK KE L+
Sbjct: 330 IHY-CDVCKISCAGPQTYKEHLEGQKHKKKEAALK 363
>sp|Q96KR1|ZFR_HUMAN Zinc finger RNA-binding protein OS=Homo sapiens GN=ZFR PE=1 SV=2
Length = 1074
Score = 33.5 bits (75), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 63 MHWSCALCQVSSTSKRNLDEHLRGKKHKAKEEGLE 97
+H+ C +C++S + EHL G+KHK KE L+
Sbjct: 330 IHY-CDVCKISCAGPQTYKEHLEGQKHKKKEAALK 363
>sp|Q9H6E5|STPAP_HUMAN Speckle targeted PIP5K1A-regulated poly(A) polymerase OS=Homo
sapiens GN=TUT1 PE=1 SV=2
Length = 874
Score = 33.5 bits (75), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 19/26 (73%)
Query: 65 WSCALCQVSSTSKRNLDEHLRGKKHK 90
+ C LC V++ ++ +LD HL G+KH+
Sbjct: 16 FRCCLCHVTTANRPSLDAHLGGRKHR 41
>sp|O88532|ZFR_MOUSE Zinc finger RNA-binding protein OS=Mus musculus GN=Zfr PE=1 SV=2
Length = 1074
Score = 33.1 bits (74), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 63 MHWSCALCQVSSTSKRNLDEHLRGKKHKAKEEGLE 97
+H+ C +C++S + EHL G+KHK KE L+
Sbjct: 330 IHY-CDVCKISCAGPQTYKEHLEGQKHKKKEAALK 363
>sp|Q5U231|ZFR_XENTR Zinc finger RNA-binding protein OS=Xenopus tropicalis GN=zfr PE=2
SV=1
Length = 1065
Score = 33.1 bits (74), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 63 MHWSCALCQVSSTSKRNLDEHLRGKKHKAKEEGLE 97
+H+ C +C++S + EHL G+KHK KE L+
Sbjct: 330 IHY-CDVCKISCAGPQTYKEHLEGQKHKKKEAALK 363
>sp|Q86UP3|ZFHX4_HUMAN Zinc finger homeobox protein 4 OS=Homo sapiens GN=ZFHX4 PE=1 SV=1
Length = 3567
Score = 33.1 bits (74), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 64 HWSCALCQVSSTSKRNLDEHLRGKKHKAKEEGLEREKKH 102
++ CA+C ++ K NL +H+R KH+ + EGL + + H
Sbjct: 1020 YYYCAVCDYTTKVKLNLVQHVRSVKHQ-QTEGLRKLQLH 1057
Score = 30.0 bits (66), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 23/52 (44%)
Query: 52 GKPCSTGSKKPMHWSCALCQVSSTSKRNLDEHLRGKKHKAKEEGLEREKKHM 103
G P + K+ W C +C + RNL H+ +KH L++ K +
Sbjct: 754 GTPSPSKPKQKPTWRCEVCDYETNVARNLRIHMTSEKHMHNMMLLQQNMKQI 805
>sp|D2HS90|STPAP_AILME Speckle targeted PIP5K1A-regulated poly(A) polymerase
OS=Ailuropoda melanoleuca GN=TUT1 PE=3 SV=1
Length = 869
Score = 33.1 bits (74), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 19/26 (73%)
Query: 65 WSCALCQVSSTSKRNLDEHLRGKKHK 90
+ C LC V++ ++ +LD HL G+KH+
Sbjct: 16 FRCCLCHVTTANRPSLDAHLGGRKHR 41
>sp|Q6GPM1|ZFR_XENLA Zinc finger RNA-binding protein OS=Xenopus laevis GN=zfr PE=2 SV=1
Length = 1054
Score = 33.1 bits (74), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 63 MHWSCALCQVSSTSKRNLDEHLRGKKHKAKEEGLE 97
+H+ C +C++S + EHL G+KHK KE L+
Sbjct: 321 IHY-CDVCKISCAGPQTYKEHLEGQKHKKKEAALK 354
>sp|Q6PCR6|ZFR_DANRE Zinc finger RNA-binding protein OS=Danio rerio GN=zfr PE=2 SV=2
Length = 1074
Score = 33.1 bits (74), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 63 MHWSCALCQVSSTSKRNLDEHLRGKKHKAKEEGLE 97
+H+ C +C++S + EHL G+KHK KE L+
Sbjct: 323 IHY-CDVCKISCAGPQTYKEHLEGQKHKKKEAALK 356
>sp|Q569K4|Z385B_HUMAN Zinc finger protein 385B OS=Homo sapiens GN=ZNF385B PE=2 SV=1
Length = 471
Score = 32.7 bits (73), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Query: 56 STGSKKPMHWSCALCQVSSTSKRNLDEHLRGKKHKAKEEGLE--REKKHMARSNESKKND 113
S KK SC +CQ+ S + H +G KH K + L+ + K M S +S K +
Sbjct: 148 SIPPKKKQVISCNVCQLRFNSDSQAEAHYKGSKHAKKVKALDATKNKPKMVPSKDSAKAN 207
Query: 114 EAVSLTTST 122
+ S+T T
Sbjct: 208 PSCSITPIT 216
>sp|Q1JPD6|STPAP_BOVIN Speckle targeted PIP5K1A-regulated poly(A) polymerase OS=Bos
taurus GN=TUT1 PE=2 SV=1
Length = 871
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 19/26 (73%)
Query: 65 WSCALCQVSSTSKRNLDEHLRGKKHK 90
+ C LC +++ ++ +LD HL G+KH+
Sbjct: 16 FRCCLCHITTANQPSLDAHLGGRKHR 41
>sp|A2A5E6|Z385C_MOUSE Zinc finger protein 385C OS=Mus musculus GN=Znf385c PE=2 SV=1
Length = 429
Score = 32.3 bits (72), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 58 GSKKPMHWSCALCQVSSTSKRNLDEHLRGKKHKAKEEG 95
G P H CALCQ+ S+ L +H+ ++HK + G
Sbjct: 292 GPSPPFH--CALCQLHVNSETQLKQHMSSRRHKDRLAG 327
>sp|Q8BXJ8|Z385B_MOUSE Zinc finger protein 385B OS=Mus musculus GN=Znf385b PE=2 SV=1
Length = 482
Score = 32.3 bits (72), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Query: 66 SCALCQVSSTSKRNLDEHLRGKKHKAKEEGLE--REKKHMARSNESKKNDEAVSLTTST 122
SC +CQ+ S + H +G KH K + LE + K M S +S K + + S+ T
Sbjct: 170 SCNVCQLRFNSDSQAEAHYKGSKHAKKVKALEATKNKPKMVPSKDSAKANPSCSIRPGT 228
>sp|Q96PM9|Z385A_HUMAN Zinc finger protein 385A OS=Homo sapiens GN=ZNF385A PE=2 SV=1
Length = 366
Score = 32.3 bits (72), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 59 SKKPMHWSCALCQVSSTSKRNLDEHLRGKKHKAKEEGLEREKKHMARSNESKKNDEAVSL 118
+K+P+ SC +CQ+ S+ + H +G +H + +G+E K + D A
Sbjct: 49 TKRPV-ISCNICQIRFNSQSQAEAHYKGNRHARRVKGIEAAKTRGREPGVREPGDPAPPG 107
Query: 119 TTST 122
+T T
Sbjct: 108 STPT 111
>sp|Q9UPR6|ZFR2_HUMAN Zinc finger RNA-binding protein 2 OS=Homo sapiens GN=ZFR2 PE=2 SV=3
Length = 939
Score = 31.6 bits (70), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 47 LPADSGKPCSTGSKKPMHWSCALCQVSSTSKRNLDEHLRGKKHKAKE 93
LP+ +P + + +H+ C +C++S + EHL G+KH+ KE
Sbjct: 254 LPSKLPRPKAGPRQLQLHY-CDICKISCAGPQTYREHLGGQKHRKKE 299
>sp|Q10038|VHP1_CAEEL Tyrosine-protein phosphatase vhp-1 OS=Caenorhabditis elegans
GN=vhp-1 PE=2 SV=2
Length = 657
Score = 31.6 bits (70), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 24 EGGQAQQVKPYPNLCGSKQEATTLPADSGKPC 55
EGG Q + YP LC S + T LP +PC
Sbjct: 136 EGGFKQFAQQYPQLCESSEGMTRLPQSLSQPC 167
>sp|O88466|ZN106_MOUSE Zinc finger protein 106 OS=Mus musculus GN=Znf106 PE=1 SV=3
Length = 1888
Score = 31.2 bits (69), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 67 CALCQVSSTSKRNLDEHLRGKKHKAKEEGLE-REKKHMAR 105
C LC + SK+ +DEH+R H + E L+ R+ H R
Sbjct: 7 CILCHIVYGSKKEMDEHMRSMLHHRELENLKGRDISHECR 46
>sp|Q66K41|Z385C_HUMAN Zinc finger protein 385C OS=Homo sapiens GN=ZNF385C PE=2 SV=2
Length = 422
Score = 30.8 bits (68), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 65 WSCALCQVSSTSKRNLDEHLRGKKHKAKEEG 95
+ CALCQ+ S+ L +H+ ++HK + G
Sbjct: 290 FHCALCQLQVNSETQLKQHMSSRRHKDRLAG 320
Score = 30.0 bits (66), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 32/75 (42%), Gaps = 1/75 (1%)
Query: 60 KKPMHWSCALCQVSSTSKRNLDEHLRGKKHKAKEEGLEREKKHMARSNESKKNDEAVSLT 119
KK + SC +C + S + H +G KH K + +E K R + ++ VS
Sbjct: 72 KKKLFISCNICHLRFNSANQAEAHYKGHKHARKLKAVEAAKSKQ-RPHTQAQDGAVVSPI 130
Query: 120 TSTTIVTPLEPTEKV 134
+ P EP KV
Sbjct: 131 PTLASGAPGEPQSKV 145
>sp|Q8IID4|DYHC2_PLAF7 Dynein heavy chain-like protein PF11_0240 OS=Plasmodium falciparum
(isolate 3D7) GN=PF11_0240 PE=3 SV=1
Length = 5251
Score = 30.0 bits (66), Expect = 8.9, Method: Composition-based stats.
Identities = 23/86 (26%), Positives = 41/86 (47%), Gaps = 6/86 (6%)
Query: 77 KRNLDEHLRGKKHKAKEEGLEREKKHMARSNESKKNDEAVSLTTSTTIVTPLEPTEKVED 136
++N ++ +K+ E+ +E+ + ++ ++++AV T V E ED
Sbjct: 4152 EKNTEDEKAVEKNTEDEKAIEKNTEDEKAVEKNTEDEKAVEQNTEDEKVV----EENTED 4207
Query: 137 EDVVTEESNEETVDCVIENAEDEEVV 162
E V E N E V +N EDE+VV
Sbjct: 4208 EKAV--EKNTEDEKAVEKNTEDEKVV 4231
>sp|Q4KMD7|STPAP_DANRE Speckle targeted PIP5K1A-regulated poly(A) polymerase OS=Danio
rerio GN=tut1 PE=2 SV=1
Length = 797
Score = 30.0 bits (66), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 11/57 (19%)
Query: 65 WSCALCQVSSTSKRNLDEHLRGKKHKAKEEGLEREKKHMARSNESKKNDEAVSLTTS 121
+ C LC V+ ++ +L++H++GKKH H+ R +K E S+ S
Sbjct: 14 FHCNLCHVNIPNRPSLEDHVKGKKH-----------LHLLRLRAQRKTQEENSVFVS 59
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.303 0.121 0.336
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,478,110
Number of Sequences: 539616
Number of extensions: 2808313
Number of successful extensions: 10779
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 195
Number of HSP's that attempted gapping in prelim test: 10202
Number of HSP's gapped (non-prelim): 700
length of query: 179
length of database: 191,569,459
effective HSP length: 110
effective length of query: 69
effective length of database: 132,211,699
effective search space: 9122607231
effective search space used: 9122607231
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 57 (26.6 bits)