BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 043014
         (173 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P96910|GAL1_MYCTU Galactokinase OS=Mycobacterium tuberculosis GN=galK PE=3 SV=2
          Length = 363

 Score = 32.7 bits (73), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 3/58 (5%)

Query: 115 LLAFFGKPRTSLVIEGRKITKEIIGF---VFKILLKEGNAVAAVCAVLGYFALVRRNC 169
           L A FG P+T+L+I+ R IT   + F      ++L   ++ A  C   G +AL R +C
Sbjct: 155 LAALFGAPKTALLIDFRDITVRPVAFDPDACDVVLLLMDSRARHCHAGGEYALRRASC 212


>sp|A5U003|GAL1_MYCTA Galactokinase OS=Mycobacterium tuberculosis (strain ATCC 25177 /
           H37Ra) GN=galK PE=3 SV=1
          Length = 363

 Score = 32.7 bits (73), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 3/58 (5%)

Query: 115 LLAFFGKPRTSLVIEGRKITKEIIGF---VFKILLKEGNAVAAVCAVLGYFALVRRNC 169
           L A FG P+T+L+I+ R IT   + F      ++L   ++ A  C   G +AL R +C
Sbjct: 155 LAALFGAPKTALLIDFRDITVRPVAFDPDACDVVLLLMDSRARHCHAGGEYALRRASC 212


>sp|Q8R456|OPN4_RAT Melanopsin OS=Rattus norvegicus GN=Opn4 PE=2 SV=1
          Length = 474

 Score = 30.4 bits (67), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 27/45 (60%), Gaps = 1/45 (2%)

Query: 86  GAVFGLLSMVAALAVAVPATLVIWITVLVLLAFFGKPRTSLVIEG 130
           GAVFG++SM+   A+A+   LVI    L  +    K RT+LV+ G
Sbjct: 150 GAVFGIVSMITLTAIAMDRYLVI-TRPLATIGMRSKRRTALVLLG 193


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.323    0.135    0.413 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,951,618
Number of Sequences: 539616
Number of extensions: 2158430
Number of successful extensions: 10417
Number of sequences better than 100.0: 38
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 35
Number of HSP's that attempted gapping in prelim test: 10404
Number of HSP's gapped (non-prelim): 45
length of query: 173
length of database: 191,569,459
effective HSP length: 109
effective length of query: 64
effective length of database: 132,751,315
effective search space: 8496084160
effective search space used: 8496084160
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 57 (26.6 bits)