Query 043014
Match_columns 173
No_of_seqs 19 out of 21
Neff 1.9
Searched_HMMs 46136
Date Fri Mar 29 11:57:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043014.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043014hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK09776 putative diguanylate 77.5 62 0.0013 30.2 14.3 32 17-48 25-56 (1092)
2 PF11821 DUF3341: Protein of u 47.9 1.1E+02 0.0024 25.0 7.3 51 29-79 42-94 (173)
3 PF02665 Nitrate_red_gam: Nitr 44.8 1.8E+02 0.0038 24.0 8.3 70 30-103 38-109 (222)
4 PF06496 DUF1097: Protein of u 38.9 66 0.0014 24.6 4.4 58 39-96 76-138 (144)
5 PF12270 Cyt_c_ox_IV: Cytochro 38.8 92 0.002 25.1 5.4 20 72-91 86-109 (137)
6 PF07787 DUF1625: Protein of u 36.0 1.5E+02 0.0032 24.5 6.3 27 84-110 218-244 (248)
7 PRK07630 CobD/CbiB family prot 35.7 1.8E+02 0.004 25.1 7.1 65 55-120 217-309 (312)
8 COG4449 Predicted protease of 33.8 1.4E+02 0.003 30.0 6.7 83 34-127 738-825 (827)
9 PF09972 DUF2207: Predicted me 33.1 2.2E+02 0.0047 24.1 6.9 22 126-149 455-476 (511)
10 PF15048 OSTbeta: Organic solu 32.3 22 0.00048 28.6 1.0 17 151-167 41-57 (125)
11 TIGR00351 narI respiratory nit 31.6 3.1E+02 0.0067 22.9 7.8 68 30-103 40-110 (224)
12 PRK10893 lipopolysaccharide ex 29.3 48 0.001 26.9 2.4 27 32-59 1-27 (192)
13 PF01616 Orbi_NS3: Orbivirus N 29.0 3.2E+02 0.0068 23.3 7.3 71 41-138 97-167 (195)
14 COG1177 PotC ABC-type spermidi 28.8 1.3E+02 0.0028 25.9 5.0 42 60-107 50-91 (267)
15 PF07330 DUF1467: Protein of u 28.6 1.9E+02 0.0041 21.5 5.2 56 4-62 27-83 (85)
16 PF11368 DUF3169: Protein of u 28.1 1.4E+02 0.003 24.5 4.9 25 101-125 51-75 (248)
17 PF02293 AmiS_UreI: AmiS/UreI 27.9 1.9E+02 0.0041 24.0 5.7 20 33-52 84-103 (166)
18 COG1480 Predicted membrane-ass 27.8 3.1E+02 0.0067 27.6 8.0 42 24-67 389-433 (700)
19 PF07019 Rab5ip: Rab5-interact 27.7 1.7E+02 0.0037 20.3 4.6 53 80-133 9-61 (81)
20 PF03869 Arc: Arc-like DNA bin 27.5 67 0.0015 21.2 2.5 24 128-151 25-48 (50)
21 KOG1289 Amino acid transporter 27.1 3.7E+02 0.0081 26.3 8.2 94 28-122 331-444 (550)
22 PF11240 DUF3042: Protein of u 26.8 73 0.0016 22.3 2.7 20 83-102 4-23 (54)
23 PF06305 DUF1049: Protein of u 24.5 1.2E+02 0.0025 19.8 3.2 13 80-92 25-37 (68)
24 PF12955 DUF3844: Domain of un 24.4 47 0.001 25.7 1.5 19 100-118 64-82 (103)
25 COG4244 Predicted membrane pro 24.4 1.1E+02 0.0025 25.3 3.8 36 128-170 79-114 (160)
26 PF14362 DUF4407: Domain of un 24.2 2.1E+02 0.0045 23.8 5.4 13 134-146 77-89 (301)
27 PRK10263 DNA translocase FtsK; 23.2 9.9E+02 0.022 26.0 12.2 19 38-56 28-46 (1355)
28 PF11085 YqhR: Conserved membr 22.8 4.7E+02 0.01 22.1 7.5 95 42-142 25-143 (173)
29 COG4413 Utp Urea transporter [ 22.6 2.8E+02 0.0061 25.5 6.2 91 75-165 90-201 (319)
30 PF11457 DUF3021: Protein of u 22.0 3.2E+02 0.0069 19.9 6.9 53 41-95 8-63 (136)
31 PRK11677 hypothetical protein; 21.9 1E+02 0.0022 24.5 3.0 18 76-93 3-20 (134)
32 PF03653 UPF0093: Uncharacteri 21.6 97 0.0021 24.0 2.8 36 99-136 57-92 (147)
33 PF08693 SKG6: Transmembrane a 21.6 71 0.0015 21.2 1.7 14 151-164 20-33 (40)
34 PF01618 MotA_ExbB: MotA/TolQ/ 21.0 2.1E+02 0.0046 21.3 4.4 16 83-98 69-84 (139)
35 PTZ00208 65 kDa invariant surf 21.0 86 0.0019 29.8 2.7 29 95-125 387-415 (436)
No 1
>PRK09776 putative diguanylate cyclase; Provisional
Probab=77.52 E-value=62 Score=30.19 Aligned_cols=32 Identities=6% Similarity=-0.032 Sum_probs=26.8
Q ss_pred CCCCCCchHHHHHHHHhcchhHHHHHHHHHHH
Q 043014 17 PTSSSSSSYKWFIRIMSKRRTWVCLFVVVYAI 48 (173)
Q Consensus 17 ~~~~~p~sy~l~l~imsKRRTWvcLF~~VYa~ 48 (173)
.+-|||..-.+-.=+.+.||.|..+|+..+..
T Consensus 25 ~~iW~~~g~~~~~ll~~~~~~~~~~~~~~~~~ 56 (1092)
T PRK09776 25 APLWFPTAIMMVAFYRHAGRMWPGILLSCSLG 56 (1092)
T ss_pred ccccccHHHHHHHHHhcchhhhHHHHHHHHHH
Confidence 45799999999888899999999888876644
No 2
>PF11821 DUF3341: Protein of unknown function (DUF3341); InterPro: IPR021776 This family of proteins are functionally uncharacterised. This family is found in bacteria. Proteins in this family are about 170 amino acids in length.
Probab=47.89 E-value=1.1e+02 Score=25.05 Aligned_cols=51 Identities=18% Similarity=0.212 Sum_probs=31.3
Q ss_pred HHHHhcchhHHHHHHHHHHHHHHhhHHHHHHHHHH--HhhhccCCCCCChhHH
Q 043014 29 IRIMSKRRTWVCLFVVVYAILLSSSWNFLKSILSW--YNLQSHQNPSSGWPAL 79 (173)
Q Consensus 29 l~imsKRRTWvcLF~~VYa~Ll~sswn~l~svl~W--y~~~~~ss~~s~~pA~ 79 (173)
-++|-.+|+++-.+..+||+.=+..=-++.---++ |..+.++-|.-.||++
T Consensus 42 d~alg~~~s~l~~~~l~~Gl~G~~~~~~l~~~t~~~dyP~~iGGKP~~S~Paf 94 (173)
T PF11821_consen 42 DEALGLKRSRLPWIALVGGLTGFATAFLLQWYTNAVDYPLNIGGKPLFSWPAF 94 (173)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhcccceecCCCCCCCCccc
Confidence 56788899999999988887655443333333333 2444455565455554
No 3
>PF02665 Nitrate_red_gam: Nitrate reductase gamma subunit; InterPro: IPR003816 The nitrate reductase enzyme (1.7.99.4 from EC) is composed of three subunits; an alpha, a beta and two gamma. It is the second nitrate reductase enzyme which it can substitute for the NRA enzyme in Escherichia coli allowing it to use nitrate as an electron acceptor during anoerobic respiration []. Nitrate reductase gamma subunit resembles cytochrome b and transfers electrons from quinones to the beta subunit [].; GO: 0008940 nitrate reductase activity, 0055114 oxidation-reduction process, 0009325 nitrate reductase complex; PDB: 1Y5L_C 3IR5_C 1Y5I_C 1Y5N_C 1Y4Z_C 3IR6_C 3IR7_C 1SIW_C 3EGW_C 1Q16_C.
Probab=44.78 E-value=1.8e+02 Score=23.98 Aligned_cols=70 Identities=20% Similarity=0.314 Sum_probs=41.0
Q ss_pred HHHhcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccCCCCCChhHHH--HHHHHHHHHHHHHHHHHHHHhhh
Q 043014 30 RIMSKRRTWVCLFVVVYAILLSSSWNFLKSILSWYNLQSHQNPSSGWPALY--ASVLLGAVFGLLSMVAALAVAVP 103 (173)
Q Consensus 30 ~imsKRRTWvcLF~~VYa~Ll~sswn~l~svl~Wy~~~~~ss~~s~~pA~Y--ASvllGaVfG~Lsm~aal~vAvp 103 (173)
...+||.-|..-++.=+++++---...+.-+. .......-.-.+..| .+..+|-++|++.++..+....|
T Consensus 38 ~~~~~r~L~~~s~lfH~Gil~v~~gH~~gll~----p~~~~~~~gi~~~~~~~~~~~~g~~~G~l~lvGl~~Ll~R 109 (222)
T PF02665_consen 38 QFLENRWLWWGSYLFHWGILLVFFGHVVGLLI----PGAWFEALGISDEFYQLLAEVLGDIAGLLALVGLLILLVR 109 (222)
T ss_dssp TTT--TTHHHHHHHHHHHHHHHHHHHHHHHHS-----TTTTTTT-S-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceecCCceeehHHHHHHHHHHHHHHHHHHHhh----hHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34688888888888888887765444432221 111100101124455 78888999999998888776654
No 4
>PF06496 DUF1097: Protein of unknown function (DUF1097); InterPro: IPR009476 This family consists of several bacterial putative membrane proteins.
Probab=38.93 E-value=66 Score=24.62 Aligned_cols=58 Identities=22% Similarity=0.399 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHhh-hcc----CCCCCChhHHHHHHHHHHHHHHHHHHH
Q 043014 39 VCLFVVVYAILLSSSWNFLKSILSWYNL-QSH----QNPSSGWPALYASVLLGAVFGLLSMVA 96 (173)
Q Consensus 39 vcLF~~VYa~Ll~sswn~l~svl~Wy~~-~~~----ss~~s~~pA~YASvllGaVfG~Lsm~a 96 (173)
++.++........+....++-+-.|+.- ... +.....|+.+-.|.++|.++|..+--.
T Consensus 76 i~v~i~~~~m~~~~~~~~l~~iP~~F~G~a~~Fa~~~~~~~~~~~~~~~l~~G~~~G~~~~~~ 138 (144)
T PF06496_consen 76 IVVGIFSFVMVYQAKLPLLSFIPGWFLGFASTFATMGGLPGNWLAVILSLLLGALLGYASEWL 138 (144)
T ss_pred HHHHHHHHHHHHHhcchHHhhCCHHHHHHHHHHHHhcccCccHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555556667777777777621 111 223678889999999999999887543
No 5
>PF12270 Cyt_c_ox_IV: Cytochrome c oxidase subunit IV; InterPro: IPR021050 This family of proteins is found in bacteria. Proteins in this family are approximately 140 amino acids in length. This family is the fourth subunit of the cytochrome c oxidase complex. This subunit does not have a catalytic capacity but instead, is required for assembly and/or stability of the complex []. ; GO: 0004129 cytochrome-c oxidase activity, 0055114 oxidation-reduction process, 0016021 integral to membrane
Probab=38.80 E-value=92 Score=25.13 Aligned_cols=20 Identities=50% Similarity=0.987 Sum_probs=14.6
Q ss_pred CCCChhHHHHH----HHHHHHHHH
Q 043014 72 PSSGWPALYAS----VLLGAVFGL 91 (173)
Q Consensus 72 ~~s~~pA~YAS----vllGaVfG~ 91 (173)
|.|+||-.-|. +.+|.+||.
T Consensus 86 P~SwWPl~la~~~al~~lGla~g~ 109 (137)
T PF12270_consen 86 PHSWWPLVLAAAAALVFLGLAFGW 109 (137)
T ss_pred CccHhHHHHHHHHHHHHHHHHHHH
Confidence 67999976653 457778887
No 6
>PF07787 DUF1625: Protein of unknown function (DUF1625); InterPro: IPR012430 Sequences making up this family are derived from hypothetical proteins expressed by both prokaryotic and eukaryotic species. The region in question is approximately 250 residues long.
Probab=36.04 E-value=1.5e+02 Score=24.47 Aligned_cols=27 Identities=15% Similarity=0.468 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 043014 84 LLGAVFGLLSMVAALAVAVPATLVIWI 110 (173)
Q Consensus 84 llGaVfG~Lsm~aal~vAvpA~mVtWI 110 (173)
+.|...++.++..++.++.=.+-+.||
T Consensus 218 l~~~~~~~~~~~~s~~lsl~~Ia~aW~ 244 (248)
T PF07787_consen 218 LVGFGLFLVAFIISFSLSLLTIALAWL 244 (248)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhe
Confidence 444455555555555555445555665
No 7
>PRK07630 CobD/CbiB family protein; Provisional
Probab=35.68 E-value=1.8e+02 Score=25.08 Aligned_cols=65 Identities=25% Similarity=0.414 Sum_probs=40.0
Q ss_pred HHHHHHHHHHhhhc-cCCCCCChhHHHHHHHHHHHHH---------------------------HHHHHHHHHHhhhhHH
Q 043014 55 NFLKSILSWYNLQS-HQNPSSGWPALYASVLLGAVFG---------------------------LLSMVAALAVAVPATL 106 (173)
Q Consensus 55 n~l~svl~Wy~~~~-~ss~~s~~pA~YASvllGaVfG---------------------------~Lsm~aal~vAvpA~m 106 (173)
|+-+.+..|.+... ..|+.++||---++..||.=.| .=.+-.++-+.-+++
T Consensus 217 ~~~~a~~~~~~~~~~~~spn~g~~~aa~AgaL~v~Lgg~~~y~g~~~~~~~~~~~~lg~~~~~~~~~i~~a~~L~~r~~- 295 (312)
T PRK07630 217 NFEDAIYAWRNQARQWPDENDGILLAAGAGALGVRLGGPLAEPSSVDALAVGDRPPLGVGDEADPRTLQSAVGLVWRAL- 295 (312)
T ss_pred CHHHHHHHHHHhhccCCCCCchHHHHHHHhhccccCCCcccccccccccccccCCCCCCCCCCCHHHHHHHHHHHHHHH-
Confidence 55677778875443 4556778875444444443111 114455666666655
Q ss_pred HHHHHHHHHHHhcC
Q 043014 107 VIWITVLVLLAFFG 120 (173)
Q Consensus 107 VtWITVlVLLaF~G 120 (173)
+.|+.++-+|+++|
T Consensus 296 ~~~l~~lallti~g 309 (312)
T PRK07630 296 VLWMLLLLLLSIAV 309 (312)
T ss_pred HHHHHHHHHHHHHH
Confidence 56999999999987
No 8
>COG4449 Predicted protease of the Abi (CAAX) family [General function prediction only]
Probab=33.81 E-value=1.4e+02 Score=29.99 Aligned_cols=83 Identities=25% Similarity=0.500 Sum_probs=50.8
Q ss_pred cchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHh-----hhhHHHH
Q 043014 34 KRRTWVCLFVVVYAILLSSSWNFLKSILSWYNLQSHQNPSSGWPALYASVLLGAVFGLLSMVAALAVA-----VPATLVI 108 (173)
Q Consensus 34 KRRTWvcLF~~VYa~Ll~sswn~l~svl~Wy~~~~~ss~~s~~pA~YASvllGaVfG~Lsm~aal~vA-----vpA~mVt 108 (173)
-||.|+-|-.. .+.+|.-.|.-++..- .| +-+-|-|+--.+| ..-|+|.+..+.+-+ -|++++-
T Consensus 738 ~r~~W~tl~a~-~~l~LfvLyHplnA~T-~y--------~rg~PvFf~PiFL-~ltglLGL~Ctvty~vT~SlW~iV~lH 806 (827)
T COG4449 738 GRRPWVTLGAA-TGLVLFVLYHPLNALT-FY--------PRGAPVFFRPIFL-LLTGLLGLGCTVTYRVTGSLWPIVLLH 806 (827)
T ss_pred cccchHhHHHH-HHHHHHHHhhhhhhhh-cc--------ccCCcceeccHHH-HHHHHHhhhhhhhHHhccchHHHHHHH
Confidence 58999976543 5566666676665321 11 2344444443333 234555555544443 3899999
Q ss_pred HHHHHHHHHhcCCCcceeh
Q 043014 109 WITVLVLLAFFGKPRTSLV 127 (173)
Q Consensus 109 WITVlVLLaF~GK~Rr~LV 127 (173)
||.|+|-++.-|-+.+.+.
T Consensus 807 W~vVvVWl~~LGG~skL~~ 825 (827)
T COG4449 807 WAVVVVWLTWLGGVSKLSH 825 (827)
T ss_pred HHHHHHHHHHhcchhhhcc
Confidence 9999999998887665544
No 9
>PF09972 DUF2207: Predicted membrane protein (DUF2207); InterPro: IPR018702 This domain has no known function.
Probab=33.06 E-value=2.2e+02 Score=24.12 Aligned_cols=22 Identities=23% Similarity=0.294 Sum_probs=15.1
Q ss_pred ehhhhhhHHHHHHHHHHHHHHhcC
Q 043014 126 LVIEGRKITKEIIGFVFKILLKEG 149 (173)
Q Consensus 126 LV~eGrkIT~dI~~~v~kvLlkEg 149 (173)
.-.+|++....+-+| |-.|+|-
T Consensus 455 ~T~~G~~~~~~~~gf--r~~L~d~ 476 (511)
T PF09972_consen 455 RTPEGAELYAQWKGF--RRYLADF 476 (511)
T ss_pred cchhHHHHHHHHHHH--HHHHhhh
Confidence 449999999988774 4344543
No 10
>PF15048 OSTbeta: Organic solute transporter subunit beta protein
Probab=32.29 E-value=22 Score=28.58 Aligned_cols=17 Identities=35% Similarity=0.548 Sum_probs=14.5
Q ss_pred HHHHHHHHhhhhheeec
Q 043014 151 AVAAVCAVLGYFALVRR 167 (173)
Q Consensus 151 ~VAa~CAvl~yf~l~rr 167 (173)
+.+.+|.++|+|+|+|.
T Consensus 41 ~Ls~vvlvi~~~LLgrs 57 (125)
T PF15048_consen 41 ALSFVVLVISFFLLGRS 57 (125)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 46889999999999874
No 11
>TIGR00351 narI respiratory nitrate reductase, gamma subunit. Involved in anerobic respiration the gene product catalyzes the reaction (reduced acceptor + NO3- = Acceptor + nitrite). Another possible role_id for this gene product is in nitrogen fixation (Role_id:160).
Probab=31.62 E-value=3.1e+02 Score=22.91 Aligned_cols=68 Identities=10% Similarity=0.116 Sum_probs=43.8
Q ss_pred HHHhcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccCCCCC-ChhHHH--HHHHHHHHHHHHHHHHHHHHhhh
Q 043014 30 RIMSKRRTWVCLFVVVYAILLSSSWNFLKSILSWYNLQSHQNPSS-GWPALY--ASVLLGAVFGLLSMVAALAVAVP 103 (173)
Q Consensus 30 ~imsKRRTWvcLF~~VYa~Ll~sswn~l~svl~Wy~~~~~ss~~s-~~pA~Y--ASvllGaVfG~Lsm~aal~vAvp 103 (173)
++.+||..|..-.+.=|++++- ++.-+.-....+.. ... -....| .+..+|.++|++..++.+....|
T Consensus 40 q~l~~k~l~~gs~lFH~gil~v----~~gH~~g~l~p~~~--~~~~~~~~~~~~~a~~~G~~aGi~~liGl~~Ll~R 110 (224)
T TIGR00351 40 QMLDKKGMNLASNLFHIGILGI----FVGHFFGMLTPHWM--YAAWLPIEVKQKMAMFAGGASGVLCLIGGVLLLKR 110 (224)
T ss_pred HHHhcCcHHhhHHHHHHHHHHH----HHHHHHHhccchHH--HHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4459999999999999999886 56666644332211 111 112222 35678889999888877766554
No 12
>PRK10893 lipopolysaccharide exporter periplasmic protein; Provisional
Probab=29.35 E-value=48 Score=26.94 Aligned_cols=27 Identities=33% Similarity=0.756 Sum_probs=19.5
Q ss_pred HhcchhHHHHHHHHHHHHHHhhHHHHHH
Q 043014 32 MSKRRTWVCLFVVVYAILLSSSWNFLKS 59 (173)
Q Consensus 32 msKRRTWvcLF~~VYa~Ll~sswn~l~s 59 (173)
|||-+.|+++.+++-+.. -+.|++..+
T Consensus 1 m~~~~~~~~~il~~~~l~-l~~W~l~~~ 27 (192)
T PRK10893 1 MSKTRRWVIILLALIALV-LIGWNLADK 27 (192)
T ss_pred CchhHHHHHHHHHHHHHH-HHHhhccCC
Confidence 899999999988875544 456666544
No 13
>PF01616 Orbi_NS3: Orbivirus NS3; InterPro: IPR002565 This is a family of Orbivirus non structural protein of unknown function, but which may play a role in release of the virus from infected cells [].
Probab=28.98 E-value=3.2e+02 Score=23.30 Aligned_cols=71 Identities=14% Similarity=0.234 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhhhccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhcC
Q 043014 41 LFVVVYAILLSSSWNFLKSILSWYNLQSHQNPSSGWPALYASVLLGAVFGLLSMVAALAVAVPATLVIWITVLVLLAFFG 120 (173)
Q Consensus 41 LF~~VYa~Ll~sswn~l~svl~Wy~~~~~ss~~s~~pA~YASvllGaVfG~Lsm~aal~vAvpA~mVtWITVlVLLaF~G 120 (173)
.|+..-..|+.|.|.....+-.=++..-+... -+...++++.+.+. .++.|..
T Consensus 97 ~li~a~v~l~ts~~~~~~~~~~~~~~~l~~~~-----------~~~~~~~~inL~~T----------------~~~~~~~ 149 (195)
T PF01616_consen 97 ELIAAIVALLTSVVMAISDMSPELKSNLKEKN-----------WISITLHVINLIAT----------------TAMMFCA 149 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhh-----------hHHHHHHHHHHHHH----------------HHHHHHH
Confidence 34455556778888888766544433322111 12234455444432 2356788
Q ss_pred CCcceehhhhhhHHHHHH
Q 043014 121 KPRTSLVIEGRKITKEII 138 (173)
Q Consensus 121 K~Rr~LV~eGrkIT~dI~ 138 (173)
|.++.|-+|=+++-+||.
T Consensus 150 r~~~~l~~~i~r~kkeI~ 167 (195)
T PF01616_consen 150 RIERSLQEQIKRLKKEIM 167 (195)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999999999986
No 14
>COG1177 PotC ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism]
Probab=28.78 E-value=1.3e+02 Score=25.93 Aligned_cols=42 Identities=31% Similarity=0.429 Sum_probs=28.0
Q ss_pred HHHHHhhhccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 043014 60 ILSWYNLQSHQNPSSGWPALYASVLLGAVFGLLSMVAALAVAVPATLV 107 (173)
Q Consensus 60 vl~Wy~~~~~ss~~s~~pA~YASvllGaVfG~Lsm~aal~vAvpA~mV 107 (173)
-++||++--+. +.++-|+.-|..+| +++...+.++++||-..
T Consensus 50 Sl~WY~~l~~~--~~~~~a~~~Sl~IA----~~s~~~s~~lg~~aA~a 91 (267)
T COG1177 50 SLKWYGALFSD--PRLLSALWNSLLIA----LLSALLATLLGTLAALA 91 (267)
T ss_pred CHHHHHHHhCC--hHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 57899877763 37888999888774 44555555555555443
No 15
>PF07330 DUF1467: Protein of unknown function (DUF1467); InterPro: IPR009935 This family consists of several bacterial proteins of around 90 residues in length. The function of this family is unknown.
Probab=28.61 E-value=1.9e+02 Score=21.49 Aligned_cols=56 Identities=16% Similarity=0.278 Sum_probs=25.8
Q ss_pred cccccCCCCCCCCCCCCCCchHHHHHHHHhcchhHH-HHHHHHHHHHHHhhHHHHHHHHH
Q 043014 4 QQQGEQEPTTPTSPTSSSSSSYKWFIRIMSKRRTWV-CLFVVVYAILLSSSWNFLKSILS 62 (173)
Q Consensus 4 q~~~~q~~~~~~~~~~~~p~sy~l~l~imsKRRTWv-cLF~~VYa~Ll~sswn~l~svl~ 62 (173)
++|+|.....| |-.+..|....+ .|.+ .+-|++ ++..++|..+.-|.|=.++.+-.
T Consensus 27 rtq~E~g~vv~-Gt~~sAP~~~~l-~rk~-~~TTiiaavi~~~~~~~~~~g~i~~~dl~~ 83 (85)
T PF07330_consen 27 RTQDEAGEVVP-GTDPSAPANPRL-KRKA-LITTIIAAVIFAIIYLIIVSGWISLDDLPQ 83 (85)
T ss_pred cccCcCCCcCC-CCCCCCCCCchH-HHHH-HHHHHHHHHHHHHHHHHHHhccccHHHhhh
Confidence 34444444455 444455555554 2222 233443 33334444455566655555543
No 16
>PF11368 DUF3169: Protein of unknown function (DUF3169); InterPro: IPR021509 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.
Probab=28.10 E-value=1.4e+02 Score=24.53 Aligned_cols=25 Identities=32% Similarity=0.356 Sum_probs=13.9
Q ss_pred hhhhHHHHHHHHHHHHHhcCCCcce
Q 043014 101 AVPATLVIWITVLVLLAFFGKPRTS 125 (173)
Q Consensus 101 AvpA~mVtWITVlVLLaF~GK~Rr~ 125 (173)
...+.++.-|+.+..+.|..|.||.
T Consensus 51 ~~i~~~~~~i~~~~~~~~~~~~~k~ 75 (248)
T PF11368_consen 51 SFIALLIIIILFLLTFYFIYKSRKY 75 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555666666665543
No 17
>PF02293 AmiS_UreI: AmiS/UreI family transporter; InterPro: IPR003211 Helicobacter pylori is a Gram-negative, ureolytic bacteria that can colonise the human stomach. It does not survive in a medium with a pH less than 4.0 unless urea is present, preferring a neutral pH. Gastric juice urea is able to rapidly access intrabacterial urease when the periplasmic pH falls below approximately 6.2 owing to pH-gating of a urea channel, UreI. UreI is a six-transmembrane segment protein that is homologous to the amiS genes of the amidase gene cluster and to UreI of Helicobacter hepaticus and Streptococcus salivarius. UreI in H. pylori and H. hepaticus can transport urea only at acidic pH, whereas that of S. salivarius is open at both neutral and acidic pH []. The amiS gene encodes an 18kDa protein with a high content of hydrophobic residues. It has six transmembrane helices. AmiB and AmiS resemble two components of an ABC transporter system []. This family includes UreI and proton gated urea channel as well as putative amide transporters [].; GO: 0006810 transport, 0016020 membrane
Probab=27.90 E-value=1.9e+02 Score=24.01 Aligned_cols=20 Identities=25% Similarity=0.519 Sum_probs=15.3
Q ss_pred hcchhHHHHHHHHHHHHHHh
Q 043014 33 SKRRTWVCLFVVVYAILLSS 52 (173)
Q Consensus 33 sKRRTWvcLF~~VYa~Ll~s 52 (173)
+|-=-|-|||++++++..+-
T Consensus 84 ~rglGWfsLFVAi~a~~~a~ 103 (166)
T PF02293_consen 84 GRGLGWFSLFVAITALPYAI 103 (166)
T ss_pred ccchhHHHHHHHHHHHHHHH
Confidence 34457999999999887653
No 18
>COG1480 Predicted membrane-associated HD superfamily hydrolase [General function prediction only]
Probab=27.81 E-value=3.1e+02 Score=27.64 Aligned_cols=42 Identities=36% Similarity=0.496 Sum_probs=28.1
Q ss_pred hHHHHHHHHhcchh---HHHHHHHHHHHHHHhhHHHHHHHHHHHhhh
Q 043014 24 SYKWFIRIMSKRRT---WVCLFVVVYAILLSSSWNFLKSILSWYNLQ 67 (173)
Q Consensus 24 sy~l~l~imsKRRT---WvcLF~~VYa~Ll~sswn~l~svl~Wy~~~ 67 (173)
+-..+++-|| ||. |.|+|+++-..++.-|- ...+..+||..-
T Consensus 389 ~~~~~l~~~s-~rs~i~~~g~~~~~~~m~~~l~l-~~~~~~~~~~~~ 433 (700)
T COG1480 389 SALVLLRKMS-RRSDILKSGLFLALMNMLLLLSL-IFAFTLSWYDAL 433 (700)
T ss_pred HHHHHHhhhh-hhHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHH
Confidence 3455677888 443 77888887766665554 566778888543
No 19
>PF07019 Rab5ip: Rab5-interacting protein (Rab5ip)
Probab=27.71 E-value=1.7e+02 Score=20.28 Aligned_cols=53 Identities=15% Similarity=0.151 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhcCCCcceehhhhhhH
Q 043014 80 YASVLLGAVFGLLSMVAALAVAVPATLVIWITVLVLLAFFGKPRTSLVIEGRKI 133 (173)
Q Consensus 80 YASvllGaVfG~Lsm~aal~vAvpA~mVtWITVlVLLaF~GK~Rr~LV~eGrkI 133 (173)
..|.+.|.+.|+|-+-.....+.=.....-++.+... -.+++.+.-..+.+++
T Consensus 9 ~~a~~~Gi~aGILgLtg~~Gf~~f~~~~~~~s~~~~~-~~~~~~~~~f~~~~~i 61 (81)
T PF07019_consen 9 IIALLAGIAAGILGLTGLYGFIFFFLSSFLVSLLYYA-KAGFPDEDYFGGPWEI 61 (81)
T ss_pred HHHHHHHHHhhhcccccHHHHHHHHHHHHHHHHHHHH-HhcCChhhhcCCHHHH
Confidence 3588899999998776665555444433333333333 4555544444444444
No 20
>PF03869 Arc: Arc-like DNA binding domain; InterPro: IPR005569 Arc repressor act by the cooperative binding of two Arc repressor dimers to a 21-base-pair operator site. Each Arc dimer uses an antiparallel beta-sheet to recognise bases in the major groove [].; GO: 0003677 DNA binding; PDB: 3QOQ_D 1MNT_B 1QTG_B 1BDV_A 1PAR_C 1BDT_C 1ARR_B 1MYL_F 1MYK_A 1NLA_B ....
Probab=27.55 E-value=67 Score=21.21 Aligned_cols=24 Identities=33% Similarity=0.450 Sum_probs=20.9
Q ss_pred hhhhhHHHHHHHHHHHHHHhcCcH
Q 043014 128 IEGRKITKEIIGFVFKILLKEGNA 151 (173)
Q Consensus 128 ~eGrkIT~dI~~~v~kvLlkEgN~ 151 (173)
.+||-+..||..-+-.-|-|||++
T Consensus 25 ~~gRS~NsEIv~~L~~~l~~e~~i 48 (50)
T PF03869_consen 25 ENGRSMNSEIVQRLEEALKKEGRI 48 (50)
T ss_dssp HTTS-HHHHHHHHHHHHHHHCTSS
T ss_pred HhCCChHHHHHHHHHHHHhccccC
Confidence 589999999999999999999974
No 21
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=27.10 E-value=3.7e+02 Score=26.27 Aligned_cols=94 Identities=21% Similarity=0.316 Sum_probs=60.8
Q ss_pred HHHHHhcchhHHHHHHHHHH-------HHHHhhHHHHHHH-------HHHHhhhccCCCCCChhHHHHHHHHHHHHHHHH
Q 043014 28 FIRIMSKRRTWVCLFVVVYA-------ILLSSSWNFLKSI-------LSWYNLQSHQNPSSGWPALYASVLLGAVFGLLS 93 (173)
Q Consensus 28 ~l~imsKRRTWvcLF~~VYa-------~Ll~sswn~l~sv-------l~Wy~~~~~ss~~s~~pA~YASvllGaVfG~Ls 93 (173)
+.+.+-||-...+.-+.+-+ .+.++|.-.- |. .+||-.+.++-+..-.-|+..+.+.++..|+|.
T Consensus 331 ~~~~lg~k~~v~~~~l~ii~~f~~gi~s~~a~SR~v~-afaRDg~LP~S~~~~~v~~~t~~P~nAv~l~~i~s~llgll~ 409 (550)
T KOG1289|consen 331 YYQALGKKGAVFLLSLIIIALFFMGISSLTASSRLVY-AFARDGGLPFSKYLAKVNPQTKVPLNAVLLSCIISILLGLLI 409 (550)
T ss_pred HHHhcCCCceEehhHHHHHHHHHhhHHHHHHHHHHHh-hhhccCCCCCcceeeecCCCCCCcHHHHHHHHHHHHHHHHHH
Confidence 36677777654443333333 4444443211 11 134444444334455679999999999999998
Q ss_pred HHHHHH------HhhhhHHHHHHHHHHHHHhcCCC
Q 043014 94 MVAALA------VAVPATLVIWITVLVLLAFFGKP 122 (173)
Q Consensus 94 m~aal~------vAvpA~mVtWITVlVLLaF~GK~ 122 (173)
++.+.| +|+-+....|.+-+++--|++|+
T Consensus 410 L~s~~Af~Alfs~a~i~l~~Ay~iP~~~rlf~~r~ 444 (550)
T KOG1289|consen 410 LASATAFNALFSAAAIALFIAYAIPIFCRLFFGRD 444 (550)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhHHhheeeccc
Confidence 876544 67778889999999999999885
No 22
>PF11240 DUF3042: Protein of unknown function (DUF3042); InterPro: IPR021402 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=26.80 E-value=73 Score=22.35 Aligned_cols=20 Identities=35% Similarity=0.326 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 043014 83 VLLGAVFGLLSMVAALAVAV 102 (173)
Q Consensus 83 vllGaVfG~Lsm~aal~vAv 102 (173)
...|.++|.++.+++++-++
T Consensus 4 F~~G~l~G~~~t~aa~a~av 23 (54)
T PF11240_consen 4 FGKGFLTGVAATLAAIAGAV 23 (54)
T ss_pred hhhhHHHhHHHHHHHHHHHH
Confidence 35688899999988887665
No 23
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=24.49 E-value=1.2e+02 Score=19.79 Aligned_cols=13 Identities=46% Similarity=0.797 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHH
Q 043014 80 YASVLLGAVFGLL 92 (173)
Q Consensus 80 YASvllGaVfG~L 92 (173)
..+.++|++.|.+
T Consensus 25 l~~f~~G~llg~l 37 (68)
T PF06305_consen 25 LIAFLLGALLGWL 37 (68)
T ss_pred HHHHHHHHHHHHH
Confidence 3444445444443
No 24
>PF12955 DUF3844: Domain of unknown function (DUF3844); InterPro: IPR024382 This presumed domain is found in fungal species. It contains 8 largely conserved cysteine residues. This domain is found in proteins thought to be located in the endoplasmic reticulum.
Probab=24.44 E-value=47 Score=25.69 Aligned_cols=19 Identities=26% Similarity=0.329 Sum_probs=14.8
Q ss_pred HhhhhHHHHHHHHHHHHHh
Q 043014 100 VAVPATLVIWITVLVLLAF 118 (173)
Q Consensus 100 vAvpA~mVtWITVlVLLaF 118 (173)
+.+|..++.|.||+.++++
T Consensus 64 vS~~F~L~~~~ti~lv~~~ 82 (103)
T PF12955_consen 64 VSVPFWLFAGFTIALVVLV 82 (103)
T ss_pred ccchhhHHHHHHHHHHHHH
Confidence 4678889999988877654
No 25
>COG4244 Predicted membrane protein [Function unknown]
Probab=24.36 E-value=1.1e+02 Score=25.27 Aligned_cols=36 Identities=28% Similarity=0.247 Sum_probs=19.1
Q ss_pred hhhhhHHHHHHHHHHHHHHhcCcHHHHHHHHhhhhheeeccCC
Q 043014 128 IEGRKITKEIIGFVFKILLKEGNAVAAVCAVLGYFALVRRNCG 170 (173)
Q Consensus 128 ~eGrkIT~dI~~~v~kvLlkEgN~VAa~CAvl~yf~l~rr~~~ 170 (173)
-+.++.+.|.-..+ ||.++.+-|.++.+.+++|++.
T Consensus 79 ~~~a~~~a~wh~~l-------G~il~~~la~~~~~r~~~~~~~ 114 (160)
T COG4244 79 GGAAKQAAEWHHVL-------GNILLIVLAILTAWRYVHRNDA 114 (160)
T ss_pred cchhHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHcCC
Confidence 33455555544433 4555566666666665555544
No 26
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=24.23 E-value=2.1e+02 Score=23.82 Aligned_cols=13 Identities=23% Similarity=0.442 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHH
Q 043014 134 TKEIIGFVFKILL 146 (173)
Q Consensus 134 T~dI~~~v~kvLl 146 (173)
.+++.+++.|+++
T Consensus 77 ~~~~~~~~~R~~l 89 (301)
T PF14362_consen 77 RKRLLQALPRLLL 89 (301)
T ss_pred HHHHHHHHHHHHH
Confidence 4566667777654
No 27
>PRK10263 DNA translocase FtsK; Provisional
Probab=23.22 E-value=9.9e+02 Score=26.03 Aligned_cols=19 Identities=16% Similarity=0.193 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHhhHHH
Q 043014 38 WVCLFVVVYAILLSSSWNF 56 (173)
Q Consensus 38 WvcLF~~VYa~Ll~sswn~ 56 (173)
.+|+.+.+|.++--.|+|.
T Consensus 28 IlLlllAlfL~lALiSYsP 46 (1355)
T PRK10263 28 ILIVLFAVWLMAALLSFNP 46 (1355)
T ss_pred HHHHHHHHHHHHHHHhCCc
Confidence 4555566665555555544
No 28
>PF11085 YqhR: Conserved membrane protein YqhR; InterPro: IPR024563 This family of proteins is conserved in the Bacillaceae family of the Firmicutes. Their function is not known.
Probab=22.80 E-value=4.7e+02 Score=22.11 Aligned_cols=95 Identities=17% Similarity=0.409 Sum_probs=49.2
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHhhhccCCC-----------CCChhHHHHHHHHHHHHHHHHHHHHHHHhh--------
Q 043014 42 FVVVYAILLSSSWNFLKSILSWYNLQSHQNP-----------SSGWPALYASVLLGAVFGLLSMVAALAVAV-------- 102 (173)
Q Consensus 42 F~~VYa~Ll~sswn~l~svl~Wy~~~~~ss~-----------~s~~pA~YASvllGaVfG~Lsm~aal~vAv-------- 102 (173)
.+-.+|-++ |..++-+.-+++-..-+.. -.+|.+.+.+++ ++|++|++||+.=-+
T Consensus 25 ~iGf~gGli---Ws~v~yl~y~f~FT~v~P~~ll~Pf~~g~wk~t~~G~~igi~---~~gv~Si~aAllY~~~l~k~~g~ 98 (173)
T PF11085_consen 25 EIGFFGGLI---WSLVRYLAYFFHFTEVGPNFLLEPFALGDWKNTWLGNLIGIV---FIGVFSIVAALLYYALLKKFKGP 98 (173)
T ss_pred HHHHHHHHH---HHHHHHHHHHhcccccccChhhhhhhccchhhhhHHHHHHHH---HHHHHHHHHHHHHHHHHHHhccc
Confidence 344455554 8888877777755443221 123444554444 589999999986432
Q ss_pred -hhH---HHHHHHHHHHH-HhcCCCcceehhhhhhHHHHHHHHHH
Q 043014 103 -PAT---LVIWITVLVLL-AFFGKPRTSLVIEGRKITKEIIGFVF 142 (173)
Q Consensus 103 -pA~---mVtWITVlVLL-aF~GK~Rr~LV~eGrkIT~dI~~~v~ 142 (173)
|-+ ++-|..|.+++ -+++--+.+.-.+-..|-.|+.-|.+
T Consensus 99 W~Gi~YG~~~W~ivF~~lnP~fp~~~~~~~l~~nTiiT~~CiyiL 143 (173)
T PF11085_consen 99 WPGILYGLAWWAIVFFVLNPIFPMIKPVTELDWNTIITTLCIYIL 143 (173)
T ss_pred chHHHHHHHHHHHHHHHhcccccCChhhhhCchhHHHHHHHHHHH
Confidence 111 23444444333 23333344444444555555555443
No 29
>COG4413 Utp Urea transporter [Amino acid transport and metabolism]
Probab=22.57 E-value=2.8e+02 Score=25.54 Aligned_cols=91 Identities=25% Similarity=0.354 Sum_probs=56.7
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHH---------HHhhhhHHHHHHHHHHHHHhcCCCcc---eehh-------hhhhHHH
Q 043014 75 GWPALYASVLLGAVFGLLSMVAAL---------AVAVPATLVIWITVLVLLAFFGKPRT---SLVI-------EGRKITK 135 (173)
Q Consensus 75 ~~pA~YASvllGaVfG~Lsm~aal---------~vAvpA~mVtWITVlVLLaF~GK~Rr---~LV~-------eGrkIT~ 135 (173)
+-|++..-+++|...-+--|.+-. +...|-++.||.+|+.--+|.+-+-. .+=+ ....=|.
T Consensus 90 ~sp~l~~i~vlg~lvSv~v~aav~~ilr~~kvp~lT~pFVlttWflvllsyaf~~l~~s~l~llPq~~~~~~~~~~s~~~ 169 (319)
T COG4413 90 WSPGLWSIVVLGCLVSVAVQAAVLHILRTWKVPALTLPFVLTTWFLVLLSYAFKFLDTSWLPLLPQAHGGCASCAWSGTA 169 (319)
T ss_pred CCcceehHHHHHHHHHHHHHHHHHHHhhhccCcccccchHHHHHHHHHHHhhhcCCCCcccccCchhhhcccccCcchHH
Confidence 456677777887766555544432 34678899999999888888776554 1111 1122244
Q ss_pred HHHHHH--HHHHHhcCcHHHHHHHHhhhhhee
Q 043014 136 EIIGFV--FKILLKEGNAVAAVCAVLGYFALV 165 (173)
Q Consensus 136 dI~~~v--~kvLlkEgN~VAa~CAvl~yf~l~ 165 (173)
++.... +.-.+-|||+++-+|-++|..+--
T Consensus 170 ~l~alf~G~sqVfl~~s~iaGvlvvIGllI~S 201 (319)
T COG4413 170 ELAALFLGISQVFLLGSPIAGVLVVIGLLIVS 201 (319)
T ss_pred HHHHHHhCchheeeecchhhhHHHHHHHHHHh
Confidence 443322 123345899999999999875533
No 30
>PF11457 DUF3021: Protein of unknown function (DUF3021); InterPro: IPR021560 This is a bacterial family of uncharacterised proteins.
Probab=21.99 E-value=3.2e+02 Score=19.87 Aligned_cols=53 Identities=23% Similarity=0.324 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhhhccCCCCCChhHHHHHH---HHHHHHHHHHHH
Q 043014 41 LFVVVYAILLSSSWNFLKSILSWYNLQSHQNPSSGWPALYASV---LLGAVFGLLSMV 95 (173)
Q Consensus 41 LF~~VYa~Ll~sswn~l~svl~Wy~~~~~ss~~s~~pA~YASv---llGaVfG~Lsm~ 95 (173)
+.-...++...+....+-+...=.+. .++.+. ....+.... ++|+++|+.|..
T Consensus 8 i~~~~iGi~ig~~i~li~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~ig~~~gl~s~i 63 (136)
T PF11457_consen 8 IKGFLIGIGIGSFISLIISLFYGQGF-YPSFPI-SVSSILSVLVAVLIGAVFGLASLI 63 (136)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccC-CCcCCc-cHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455677777777766655443222 222222 223333333 699999997643
No 31
>PRK11677 hypothetical protein; Provisional
Probab=21.87 E-value=1e+02 Score=24.51 Aligned_cols=18 Identities=17% Similarity=0.621 Sum_probs=11.5
Q ss_pred hhHHHHHHHHHHHHHHHH
Q 043014 76 WPALYASVLLGAVFGLLS 93 (173)
Q Consensus 76 ~pA~YASvllGaVfG~Ls 93 (173)
|....++++.|+++|.+.
T Consensus 3 W~~a~i~livG~iiG~~~ 20 (134)
T PRK11677 3 WEYALIGLVVGIIIGAVA 20 (134)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 555556777777777654
No 32
>PF03653 UPF0093: Uncharacterised protein family (UPF0093); InterPro: IPR005265 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are predicted to be integral membrane proteins (with several transmembrane segments). There is some indirect indication of a link between this protein and the function or assembly of cytochromes: in Escherichia coli, strains overproducing this protein turn pink, perhaps because of an excess of accumulated haems [].
Probab=21.60 E-value=97 Score=24.05 Aligned_cols=36 Identities=22% Similarity=0.270 Sum_probs=23.1
Q ss_pred HHhhhhHHHHHHHHHHHHHhcCCCcceehhhhhhHHHH
Q 043014 99 AVAVPATLVIWITVLVLLAFFGKPRTSLVIEGRKITKE 136 (173)
Q Consensus 99 ~vAvpA~mVtWITVlVLLaF~GK~Rr~LV~eGrkIT~d 136 (173)
.++.||+.++|++-+.+|+..+ .-....+++-..|=
T Consensus 57 ~I~~PAmilt~~~G~~ll~~~~--~~~~~~~~Wl~vKL 92 (147)
T PF03653_consen 57 IIMTPAMILTWISGLLLLFLNP--GLGWFSSPWLHVKL 92 (147)
T ss_pred HHHhHHHHHHHHHHHHHHHHhh--hhhhhcCcHHHHHH
Confidence 4678999999999988777654 11124455555543
No 33
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=21.56 E-value=71 Score=21.21 Aligned_cols=14 Identities=36% Similarity=0.598 Sum_probs=11.0
Q ss_pred HHHHHHHHhhhhhe
Q 043014 151 AVAAVCAVLGYFAL 164 (173)
Q Consensus 151 ~VAa~CAvl~yf~l 164 (173)
+|+++.+++++|++
T Consensus 20 PV~vI~~vl~~~l~ 33 (40)
T PF08693_consen 20 PVGVIIIVLGAFLF 33 (40)
T ss_pred chHHHHHHHHHHhh
Confidence 57788888888766
No 34
>PF01618 MotA_ExbB: MotA/TolQ/ExbB proton channel family MotA family only; InterPro: IPR002898 This family groups together integral membrane proteins that appear to be involved in translocation of proteins across a membrane. These proteins are probably proton channels. MotA is an essential component of the flagellar motor that uses a proton gradient to generate rotational motion in the flagellar []. ExbB is part of the TonB-dependent transduction complex. The TonB complex uses the proton gradient across the inner bacterial membrane to transport large molecules across the outer bacterial membrane.; GO: 0008565 protein transporter activity, 0006810 transport, 0016020 membrane
Probab=21.00 E-value=2.1e+02 Score=21.33 Aligned_cols=16 Identities=44% Similarity=0.715 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 043014 83 VLLGAVFGLLSMVAAL 98 (173)
Q Consensus 83 vllGaVfG~Lsm~aal 98 (173)
.++|+|.|+..+-..+
T Consensus 69 GLlGTv~Gmi~~f~~l 84 (139)
T PF01618_consen 69 GLLGTVIGMIEAFQAL 84 (139)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3556666665554444
No 35
>PTZ00208 65 kDa invariant surface glycoprotein; Provisional
Probab=20.98 E-value=86 Score=29.84 Aligned_cols=29 Identities=34% Similarity=0.473 Sum_probs=19.5
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHhcCCCcce
Q 043014 95 VAALAVAVPATLVIWITVLVLLAFFGKPRTS 125 (173)
Q Consensus 95 ~aal~vAvpA~mVtWITVlVLLaF~GK~Rr~ 125 (173)
+-.|+|-+|++.+.=|++.|++ +.||||-
T Consensus 387 ~i~~avl~p~~il~~~~~~~~~--~v~rrr~ 415 (436)
T PTZ00208 387 MIILAVLVPAIILAIIAVAFFI--MVKRRRN 415 (436)
T ss_pred HHHHHHHHHHHHHHHHHHHhhe--eeeeccC
Confidence 3467888999988866655543 4566663
Done!