Query 043014
Match_columns 173
No_of_seqs 19 out of 21
Neff 1.9
Searched_HMMs 29240
Date Mon Mar 25 21:00:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043014.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043014hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2f93_B Sensory rhodopsin II tr 19.6 1.6E+02 0.0054 22.3 4.7 42 77-118 27-71 (122)
2 3l2c_A Forkhead box protein O4 16.1 46 0.0016 24.3 0.9 19 10-28 7-32 (110)
3 1pw4_A Glycerol-3-phosphate tr 13.0 4.3E+02 0.015 19.7 7.9 20 49-68 39-58 (451)
4 1xgw_A Epsin 4; ENTH, enthopro 11.2 1.9E+02 0.0066 22.6 3.3 7 12-18 45-51 (176)
5 2qho_B E3 ubiquitin-protein li 10.8 61 0.0021 22.0 0.2 30 118-147 20-49 (53)
6 3arc_Z Photosystem II reaction 10.6 2.4E+02 0.0082 19.3 3.2 20 87-106 8-27 (62)
7 2k1k_A Ephrin type-A receptor 10.4 3.2E+02 0.011 16.6 4.5 18 79-96 12-29 (38)
8 2k9y_A Ephrin type-A receptor 10.3 2.9E+02 0.0098 16.0 3.2 16 73-88 9-24 (41)
9 3hd7_B Syntaxin-1A; membrane p 10.2 1.6E+02 0.0053 20.8 2.2 13 33-45 82-94 (109)
10 1m56_D Cytochrome C oxidase; m 10.0 3.1E+02 0.011 17.8 3.5 26 23-49 23-48 (51)
No 1
>2f93_B Sensory rhodopsin II transducer; menbrane protein complex, signal transduction, photocycle ST membrane protein; HET: BOG RET; 2.00A {Natronomonas pharaonis} SCOP: f.17.4.1
Probab=19.58 E-value=1.6e+02 Score=22.26 Aligned_cols=42 Identities=29% Similarity=0.064 Sum_probs=24.9
Q ss_pred hHHHHHHHHHHHHHHHHHHH---HHHHhhhhHHHHHHHHHHHHHh
Q 043014 77 PALYASVLLGAVFGLLSMVA---ALAVAVPATLVIWITVLVLLAF 118 (173)
Q Consensus 77 pA~YASvllGaVfG~Lsm~a---al~vAvpA~mVtWITVlVLLaF 118 (173)
-.++..+..|++|+.=...+ .-+.|+...+-.|+.+++++++
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~q~~seA~A~~~~V~~~liil~~v~l 71 (122)
T 2f93_B 27 FVGALTVLFGAIAYGEVTAAAATGDAAAVQEAAVSAILGLIILLG 71 (122)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667777777777554443 4455556666666666655554
No 2
>3l2c_A Forkhead box protein O4; winged helix, transcription-DNA COMP; 1.87A {Homo sapiens} SCOP: a.4.5.14 PDB: 3co6_C*
Probab=16.07 E-value=46 Score=24.34 Aligned_cols=19 Identities=26% Similarity=0.438 Sum_probs=8.4
Q ss_pred CCCCCCCCC-------CCCCchHHHH
Q 043014 10 EPTTPTSPT-------SSSSSSYKWF 28 (173)
Q Consensus 10 ~~~~~~~~~-------~~~p~sy~l~ 28 (173)
|+.++.+|. ++||+||.-+
T Consensus 7 ~p~~~~~~~~~~~~~~~kPpySY~~L 32 (110)
T 3l2c_A 7 DPGAVTGPRKGGSRRNAWGNQSYAEL 32 (110)
T ss_dssp -------------CCBTTBSCCHHHH
T ss_pred CCCCCCCCCCCccCCCCCCCCCHHHH
Confidence 344444555 8999999763
No 3
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=13.00 E-value=4.3e+02 Score=19.70 Aligned_cols=20 Identities=5% Similarity=-0.097 Sum_probs=11.2
Q ss_pred HHHhhHHHHHHHHHHHhhhc
Q 043014 49 LLSSSWNFLKSILSWYNLQS 68 (173)
Q Consensus 49 Ll~sswn~l~svl~Wy~~~~ 68 (173)
+....+......+..|..+.
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~ 58 (451)
T 1pw4_A 39 AYYLVRKNFALAMPYLVEQG 58 (451)
T ss_dssp HHHHHHTSHHHHHHHTTSST
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 33445555666677765544
No 4
>1xgw_A Epsin 4; ENTH, enthoprotin, clathrin-associated, endocytosis; 1.90A {Homo sapiens} PDB: 2qy7_A 2v8s_E
Probab=11.15 E-value=1.9e+02 Score=22.55 Aligned_cols=7 Identities=29% Similarity=0.648 Sum_probs=4.8
Q ss_pred CCCCCCC
Q 043014 12 TTPTSPT 18 (173)
Q Consensus 12 ~~~~~~~ 18 (173)
.+||||+
T Consensus 45 nd~wGPs 51 (176)
T 1xgw_A 45 DDPWGPS 51 (176)
T ss_dssp SCSSCCC
T ss_pred CCCCCCC
Confidence 4677776
No 5
>2qho_B E3 ubiquitin-protein ligase EDD1; protein-protein complex, protein binding/ligase complex; 1.85A {Homo sapiens}
Probab=10.78 E-value=61 Score=22.03 Aligned_cols=30 Identities=20% Similarity=0.272 Sum_probs=24.0
Q ss_pred hcCCCcceehhhhhhHHHHHHHHHHHHHHh
Q 043014 118 FFGKPRTSLVIEGRKITKEIIGFVFKILLK 147 (173)
Q Consensus 118 F~GK~Rr~LV~eGrkIT~dI~~~v~kvLlk 147 (173)
.-||+|.+.+.|=++-..|+-.-+=..|-|
T Consensus 20 LqgksR~vIirELqrTnLdVN~AvNNlLsR 49 (53)
T 2qho_B 20 LQGKSRSVIIRELQRTNLDVNLAVNNLLSR 49 (53)
T ss_dssp STTCCHHHHHHHHHHTTTCHHHHHHHHHC-
T ss_pred hcCCcHHHHHHHHHHhCccHHHHHHHHhcc
Confidence 479999999999999888887776665554
No 6
>3arc_Z Photosystem II reaction center protein Z; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_Z* 3a0b_Z* 3a0h_Z* 2axt_Z* 3bz1_Z* 3bz2_Z* 3kzi_Z* 3prq_Z* 3prr_Z*
Probab=10.56 E-value=2.4e+02 Score=19.28 Aligned_cols=20 Identities=20% Similarity=0.404 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHhhhhHH
Q 043014 87 AVFGLLSMVAALAVAVPATL 106 (173)
Q Consensus 87 aVfG~Lsm~aal~vAvpA~m 106 (173)
++|.+..++-.|++++|-..
T Consensus 8 ~v~aLi~~Sf~LVVgVPV~~ 27 (62)
T 3arc_Z 8 ALAALVILSFVMVIGVPVAY 27 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHheeeeEE
Confidence 57888888889999998543
No 7
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=10.42 E-value=3.2e+02 Score=16.57 Aligned_cols=18 Identities=17% Similarity=0.414 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 043014 79 LYASVLLGAVFGLLSMVA 96 (173)
Q Consensus 79 ~YASvllGaVfG~Lsm~a 96 (173)
--|..+.|.+.|+..+++
T Consensus 12 aIAGiVvG~v~gv~li~~ 29 (38)
T 2k1k_A 12 EIVAVIFGLLLGAALLLG 29 (38)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred ceeeeehHHHHHHHHHHH
Confidence 346666666666655443
No 8
>2k9y_A Ephrin type-A receptor 2; receptor tyrosine kinase, membrane protein, dimeric transmembrane domain, ephrin receptor, ATP-binding, glycoprotein; NMR {Homo sapiens}
Probab=10.35 E-value=2.9e+02 Score=16.00 Aligned_cols=16 Identities=38% Similarity=0.455 Sum_probs=8.3
Q ss_pred CCChhHHHHHHHHHHH
Q 043014 73 SSGWPALYASVLLGAV 88 (173)
Q Consensus 73 ~s~~pA~YASvllGaV 88 (173)
.+..+++-.+++.|.+
T Consensus 9 ~~~~~~I~~~vv~Gv~ 24 (41)
T 2k9y_A 9 GSGNLAVIGGVAVGVV 24 (41)
T ss_dssp CCSSTHHHHHHHHHHH
T ss_pred CCceEEEEeehhHHHH
Confidence 3455666555554433
No 9
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=10.16 E-value=1.6e+02 Score=20.83 Aligned_cols=13 Identities=15% Similarity=0.442 Sum_probs=7.2
Q ss_pred hcchhHHHHHHHH
Q 043014 33 SKRRTWVCLFVVV 45 (173)
Q Consensus 33 sKRRTWvcLF~~V 45 (173)
++||.|.|+++++
T Consensus 82 ~rkk~~i~l~~~~ 94 (109)
T 3hd7_B 82 ARRKKIMIIICCV 94 (109)
T ss_dssp HHHHHHHHHHHHH
T ss_pred ccCcceehHHHHH
Confidence 4455666666543
No 10
>1m56_D Cytochrome C oxidase; membrane protein, oxidoreductase; HET: HEA PEH; 2.30A {Rhodobacter sphaeroides} SCOP: f.23.8.1 PDB: 1m57_D*
Probab=10.03 E-value=3.1e+02 Score=17.79 Aligned_cols=26 Identities=19% Similarity=0.388 Sum_probs=17.6
Q ss_pred chHHHHHHHHhcchhHHHHHHHHHHHH
Q 043014 23 SSYKWFIRIMSKRRTWVCLFVVVYAIL 49 (173)
Q Consensus 23 ~sy~l~l~imsKRRTWvcLF~~VYa~L 49 (173)
.+|-.|++ ++|+-+.++..++++-++
T Consensus 23 ~Ty~gFi~-~~k~gt~~~~~~ll~lai 48 (51)
T 1m56_D 23 KTFAGFVR-MVTWAAVVIVAALIFLAL 48 (51)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 68999887 466666666666655544
Done!