BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>043015
KPGLLLLLFVLSIVSIGWVNSHEESVLAKFKLGLITLDGHADDWEDINGSEFSLLPALDL
HAEHEYKSEKMNVKALHDGHDVYFLLQVDGEYAYSKGENTRCPSIALMFQIGEDATYHNM
GGCKKGTGSCTSKTCKGHEVDIMYFSIESAIPGRLYDGNPVDNSEGNGGDRFGHLVDVYV
WTPHCRYLDGMGPSERIQQLLKLQIGNATRMRFRNNCS

High Scoring Gene Products

Symbol, full name Information P value
AT3G62370 protein from Arabidopsis thaliana 5.9e-73

Back to top

Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  043015
        (218 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2096064 - symbol:AT3G62370 species:3702 "Arabi...   737  5.9e-73   1


>TAIR|locus:2096064 [details] [associations]
            symbol:AT3G62370 species:3702 "Arabidopsis thaliana"
            [GO:0020037 "heme binding" evidence=IEA] [GO:0005794 "Golgi
            apparatus" evidence=IDA] [GO:0005768 "endosome" evidence=IDA]
            [GO:0005802 "trans-Golgi network" evidence=IDA] InterPro:IPR019020
            Pfam:PF09459 SMART:SM00887 GO:GO:0005794 EMBL:CP002686
            GO:GO:0005768 GO:GO:0020037 GO:GO:0005802 EMBL:AL162507
            EMBL:AY080841 EMBL:AY133773 IPI:IPI00542405 PIR:T48029
            RefSeq:NP_191796.1 UniGene:At.34125 ProteinModelPortal:Q9LZQ3
            PRIDE:Q9LZQ3 EnsemblPlants:AT3G62370.1 GeneID:825410
            KEGG:ath:AT3G62370 TAIR:At3g62370 HOGENOM:HOG000006070
            InParanoid:Q9LZQ3 OMA:DIMHFSI PhylomeDB:Q9LZQ3
            ProtClustDB:CLSN2684131 ArrayExpress:Q9LZQ3 Genevestigator:Q9LZQ3
            Uniprot:Q9LZQ3
        Length = 361

 Score = 737 (264.5 bits), Expect = 5.9e-73, P = 5.9e-73
 Identities = 127/172 (73%), Positives = 147/172 (85%)

Query:    23 EESVLAKFKLGLITLDGHADDWEDINGSEFSLLPALDLHAEHEYKSEKMNVKALHDGHDV 82
             E  VLA F+ G+ITLDGH DDW+DI+GSEF L PALD  ++HEY + KM VKALHDG D+
Sbjct:    34 EIQVLADFRPGIITLDGHNDDWKDIDGSEFPLRPALDPDSDHEYDAGKMTVKALHDGRDI 93

Query:    83 YFLLQVDGEYAYSKGENTRCPSIALMFQIGEDATYHNMGGCKKGTGSCTSKTCKGHEVDI 142
             YFLL++DG YAY KGEN +CPS+ALMFQIG+ ATYHNMGGCK+GT SCTSK C+G EVDI
Sbjct:    94 YFLLEIDGNYAYDKGENNKCPSVALMFQIGDQATYHNMGGCKEGTDSCTSKACRGFEVDI 153

Query:   143 MYFSIESAIPGRLYDGNPVDNSEGNGGDRFGHLVDVYVWTPHCRYLDGMGPS 194
             M+FSI +AIPGRLY GNP+DN EGNGGDRFGHLVD+Y W PHCRYLDG+GPS
Sbjct:   154 MHFSIGNAIPGRLYGGNPIDNGEGNGGDRFGHLVDIYAWNPHCRYLDGLGPS 205


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.137   0.431    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      218       203   0.00092  111 3  11 22  0.38    33
                                                     31  0.46    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  601 (64 KB)
  Total size of DFA:  193 KB (2110 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  16.62u 0.12s 16.74t   Elapsed:  00:00:00
  Total cpu time:  16.62u 0.12s 16.74t   Elapsed:  00:00:00
  Start:  Sat May 11 14:18:32 2013   End:  Sat May 11 14:18:32 2013

Back to top