BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043015
(218 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2NZ5|A Chain A, Structure And Function Studies Of Cytochrome P450 158a1
From Streptomyces Coelicolor A3(2)
pdb|2NZ5|B Chain B, Structure And Function Studies Of Cytochrome P450 158a1
From Streptomyces Coelicolor A3(2)
pdb|2NZA|A Chain A, Structure And Function Studies Of Cytochrome P450 158a1
From Streptomyces Coelicolor A3(2)
pdb|2NZA|B Chain B, Structure And Function Studies Of Cytochrome P450 158a1
From Streptomyces Coelicolor A3(2)
Length = 413
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 6/58 (10%)
Query: 66 YKSEKMNVKALHDGHDVYFLLQVDGEYAYSKGE--NTRCPSIALMFQIGEDATYHNMG 121
+ +E + +A +G DVY +L A +GE T +A QIG +A HN+G
Sbjct: 201 WITETVRARAGSEGGDVYSMLGA----AVGRGEVGETEAVGLAGPLQIGGEAVTHNVG 254
>pdb|2DKK|A Chain A, Structure/function Studies Of Cytochrome P450 158a1 From
Streptomyces Coelicolor A3(2)
Length = 411
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 6/58 (10%)
Query: 66 YKSEKMNVKALHDGHDVYFLLQVDGEYAYSKGE--NTRCPSIALMFQIGEDATYHNMG 121
+ +E + +A +G DVY +L A +GE T +A QIG +A HN+G
Sbjct: 201 WITETVRARAGSEGGDVYSMLGA----AVGRGEVGETEAVGLAGPLQIGGEAVTHNVG 254
>pdb|3HRW|B Chain B, Crystal Structure Of Hemoglobin From Mouse (Mus
Musculus)at 2.8
pdb|3HRW|D Chain D, Crystal Structure Of Hemoglobin From Mouse (Mus
Musculus)at 2.8
Length = 146
Score = 28.1 bits (61), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Query: 163 NSEGNGGDRFGHLVDVYVWTPHCRYLDGMG 192
NS+ GG+ G L+ VY WT RY D G
Sbjct: 19 NSDEVGGEALGRLLVVYPWTQ--RYFDSFG 46
>pdb|3UQC|A Chain A, Structure Of The Intracellular Kinase Homology Domain Of
Rv3910 At 2.2 A Resolution
pdb|3UQC|B Chain B, Structure Of The Intracellular Kinase Homology Domain Of
Rv3910 At 2.2 A Resolution
pdb|3UQC|C Chain C, Structure Of The Intracellular Kinase Homology Domain Of
Rv3910 At 2.2 A Resolution
pdb|3UQC|D Chain D, Structure Of The Intracellular Kinase Homology Domain Of
Rv3910 At 2.2 A Resolution
Length = 286
Score = 27.7 bits (60), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 150 AIPGRLYDGNPVDNSEGNGGDRFGHLVDVYVWTPHCRYLDGMGPSER 196
A P + D NP D+ G G + LV+ + P G+ P+ER
Sbjct: 171 AYPATMPDANPQDDIRGIGASLYALLVNRWPL-PEAGVRSGLAPAER 216
>pdb|3OTV|A Chain A, Crystal Structure Of The Intracellular Domain Of Rv3910
From Mycobacterium Tuberculosis
pdb|3OTV|B Chain B, Crystal Structure Of The Intracellular Domain Of Rv3910
From Mycobacterium Tuberculosis
pdb|3OTV|C Chain C, Crystal Structure Of The Intracellular Domain Of Rv3910
From Mycobacterium Tuberculosis
pdb|3OTV|D Chain D, Crystal Structure Of The Intracellular Domain Of Rv3910
From Mycobacterium Tuberculosis
pdb|3OUK|A Chain A, Crystal Structure Of Rv3910 From Mycobacterium
Tuberculosis
Length = 285
Score = 27.7 bits (60), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 150 AIPGRLYDGNPVDNSEGNGGDRFGHLVDVYVWTPHCRYLDGMGPSER 196
A P + D NP D+ G G + LV+ + P G+ P+ER
Sbjct: 170 AYPATMPDANPQDDIRGIGASLYALLVNRWPL-PEAGVRSGLAPAER 215
>pdb|3OUN|B Chain B, Crystal Structure Of The Fhaa Fha Domain Complexed With
The Intracellular Domain Of Rv3910
Length = 288
Score = 27.7 bits (60), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 150 AIPGRLYDGNPVDNSEGNGGDRFGHLVDVYVWTPHCRYLDGMGPSER 196
A P + D NP D+ G G + LV+ + P G+ P+ER
Sbjct: 173 AYPATMPDANPQDDIRGIGASLYALLVNRWPL-PEAGVRSGLAPAER 218
>pdb|1I3D|A Chain A, Human Carbonmonoxy Hemoglobin Bart's (Gamma4)
pdb|1I3D|B Chain B, Human Carbonmonoxy Hemoglobin Bart's (Gamma4)
pdb|1I3E|A Chain A, Human Azido-Met Hemoglobin Bart's (Gamma4)
pdb|1I3E|B Chain B, Human Azido-Met Hemoglobin Bart's (Gamma4)
Length = 146
Score = 27.3 bits (59), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Query: 163 NSEGNGGDRFGHLVDVYVWTPHCRYLDGMG 192
N E GG+ G L+ VY WT R+ D G
Sbjct: 19 NVEDAGGETLGRLLVVYPWTQ--RFFDSFG 46
>pdb|1FDH|G Chain G, Structure Of Human Foetal Deoxyhaemoglobin
pdb|1FDH|H Chain H, Structure Of Human Foetal Deoxyhaemoglobin
Length = 147
Score = 27.3 bits (59), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Query: 163 NSEGNGGDRFGHLVDVYVWTPHCRYLDGMG 192
N E GG+ G L+ VY WT R+ D G
Sbjct: 20 NVEDAGGETLGRLLVVYPWTQ--RFFDSFG 47
>pdb|1JEB|B Chain B, Chimeric HumanMOUSE CARBONMONOXY HEMOGLOBIN (HUMAN ZETA2
Mouse Beta2)
pdb|1JEB|D Chain D, Chimeric HumanMOUSE CARBONMONOXY HEMOGLOBIN (HUMAN ZETA2
Mouse Beta2)
Length = 146
Score = 26.9 bits (58), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Query: 163 NSEGNGGDRFGHLVDVYVWTPHCRYLDGMG 192
N++ GG+ G L+ VY WT RY D G
Sbjct: 19 NADEVGGEALGRLLVVYPWTQ--RYFDSFG 46
>pdb|2BSP|A Chain A, Bacillus Subtilis Pectate Lyase R279k Mutant
Length = 420
Score = 26.9 bits (58), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 11/38 (28%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
Query: 159 NPVDNSEGNGGDRFGHLV---DVYVWTPHCRYLDGMGP 193
+P D S GN ++ ++ ++W HC + DG P
Sbjct: 191 DPTDGSSGNWNSQYDNITINGGTHIWIDHCTFNDGSRP 228
>pdb|1BN8|A Chain A, Bacillus Subtilis Pectate Lyase
Length = 420
Score = 26.6 bits (57), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 11/38 (28%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
Query: 159 NPVDNSEGNGGDRFGHLV---DVYVWTPHCRYLDGMGP 193
+P D S GN ++ ++ ++W HC + DG P
Sbjct: 191 DPTDGSSGNWNSQYDNITINGGTHIWIDHCTFNDGSRP 228
>pdb|2NZM|A Chain A, Hexasaccharide I Bound To Bacillus Subtilis Pectate Lyase
pdb|2O04|A Chain A, Pectate Lyase Bound To Hexasaccharide Compound Ii
pdb|2O0V|A Chain A, Pectate Lyase Bound To Hexasaccharide Compound Iii
pdb|2O0W|A Chain A, Pectate Lyase Bound To Hexasaccharide Compound Iv
pdb|2O17|A Chain A, Pectate Lyase Bound To Hexasaccharide
pdb|2O1D|A Chain A, Pectate Lyase Bound To Trisaccharide
Length = 399
Score = 26.6 bits (57), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 11/38 (28%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
Query: 159 NPVDNSEGNGGDRFGHLV---DVYVWTPHCRYLDGMGP 193
+P D S GN ++ ++ ++W HC + DG P
Sbjct: 170 DPTDGSSGNWNSQYDNITINGGTHIWIDHCTFNDGSRP 207
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.137 0.431
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,970,648
Number of Sequences: 62578
Number of extensions: 310579
Number of successful extensions: 580
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 570
Number of HSP's gapped (non-prelim): 27
length of query: 218
length of database: 14,973,337
effective HSP length: 95
effective length of query: 123
effective length of database: 9,028,427
effective search space: 1110496521
effective search space used: 1110496521
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)