BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043015
(218 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|B5ZTH4|DAPF_RHILW Diaminopimelate epimerase OS=Rhizobium leguminosarum bv. trifolii
(strain WSM2304) GN=dapF PE=1 SV=1
Length = 301
Score = 34.7 bits (78), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 6/84 (7%)
Query: 46 DINGSEFSLLPALDLHAEHEYKSEKMNVKALHD----GHDVYF-LLQVDGEYAYSKGENT 100
D+ G + PA + + ++E + A+HD G D + +L DG A + G T
Sbjct: 21 DMRGRPDKVTPAAAVALNADPQTEFDQIMAIHDPKADGTDAFIDILNSDGSKAQACGNGT 80
Query: 101 RCPSIALMFQIGEDA-TYHNMGGC 123
RC AL + G A T+ + G
Sbjct: 81 RCVVQALAAETGRKAFTFQTVAGI 104
>sp|Q2K386|DAPF_RHIEC Diaminopimelate epimerase OS=Rhizobium etli (strain CFN 42 / ATCC
51251) GN=dapF PE=1 SV=1
Length = 301
Score = 34.3 bits (77), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 6/83 (7%)
Query: 46 DINGSEFSLLPALDLHAEHEYKSEKMNVKALHD----GHDVYF-LLQVDGEYAYSKGENT 100
D+ G + PA + + ++E + A+HD G D + +L DG A + G T
Sbjct: 21 DMRGRSDKVTPAAAVALNADPQTEFDQIMAIHDPKADGTDAFIDILNSDGSKAQACGNGT 80
Query: 101 RCPSIALMFQIGEDA-TYHNMGG 122
RC AL + G A T+ + G
Sbjct: 81 RCVVQALAAETGRKAFTFQTVAG 103
>sp|Q5SNL7|FAN1_ORYSJ Fanconi-associated nuclease 1 homolog OS=Oryza sativa subsp.
japonica GN=Os06g0171800 PE=3 SV=1
Length = 964
Score = 31.2 bits (69), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 5/67 (7%)
Query: 17 GWVNSHEESVLAKFKLGLITLDGHADDWEDINGSEFSLLPALDLHAEHEYKSEK----MN 72
GW +H E + GL+ D D D+ ++F P LDL + Y+S K
Sbjct: 779 GWRGTHSEGGIWMTIFGLLMWDAIFSDVPDVFQTKFQTAP-LDLETDEFYRSRKDLIESQ 837
Query: 73 VKALHDG 79
+K + DG
Sbjct: 838 LKKIQDG 844
>sp|A9M8R8|DAPF_BRUC2 Diaminopimelate epimerase OS=Brucella canis (strain ATCC 23365 /
NCTC 10854) GN=dapF PE=1 SV=1
Length = 303
Score = 30.4 bits (67), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 37/88 (42%), Gaps = 6/88 (6%)
Query: 46 DINGSEFSLLPALDLHAEHEYKSEKMNVKALHD----GHDVYF-LLQVDGEYAYSKGENT 100
D+ G S+ A + + ++ + A+HD G D Y ++ DG A + G T
Sbjct: 21 DMRGRADSITSAAAIRLASDSETAFDQIMAIHDPRTPGTDYYIAIINCDGTQAQACGNGT 80
Query: 101 RCPSIALMFQIGEDA-TYHNMGGCKKGT 127
RC AL + G A T+ G T
Sbjct: 81 RCVVQALAAETGRHAFTFETRAGILTAT 108
>sp|Q8YJF0|DAPF_BRUME Diaminopimelate epimerase OS=Brucella melitensis biotype 1 (strain
16M / ATCC 23456 / NCTC 10094) GN=dapF PE=1 SV=1
Length = 303
Score = 30.4 bits (67), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 37/88 (42%), Gaps = 6/88 (6%)
Query: 46 DINGSEFSLLPALDLHAEHEYKSEKMNVKALHD----GHDVYF-LLQVDGEYAYSKGENT 100
D+ G S+ A + + ++ + A+HD G D Y ++ DG A + G T
Sbjct: 21 DMRGRADSITSAAAIRLASDSETAFDQIMAIHDPRTPGTDYYIAIINCDGTQAQACGNGT 80
Query: 101 RCPSIALMFQIGEDA-TYHNMGGCKKGT 127
RC AL + G A T+ G T
Sbjct: 81 RCVVQALAAETGRHAFTFETRAGILTAT 108
>sp|Q8FYF0|DAPF_BRUSU Diaminopimelate epimerase OS=Brucella suis biovar 1 (strain 1330)
GN=dapF PE=1 SV=1
Length = 303
Score = 30.4 bits (67), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 37/88 (42%), Gaps = 6/88 (6%)
Query: 46 DINGSEFSLLPALDLHAEHEYKSEKMNVKALHD----GHDVYF-LLQVDGEYAYSKGENT 100
D+ G S+ A + + ++ + A+HD G D Y ++ DG A + G T
Sbjct: 21 DMRGRADSITSAAAIRLASDSETAFDQIMAIHDPRTPGTDYYIAIINCDGTQAQACGNGT 80
Query: 101 RCPSIALMFQIGEDA-TYHNMGGCKKGT 127
RC AL + G A T+ G T
Sbjct: 81 RCVVQALAAETGRHAFTFETRAGILTAT 108
>sp|B0CIT6|DAPF_BRUSI Diaminopimelate epimerase OS=Brucella suis (strain ATCC 23445 /
NCTC 10510) GN=dapF PE=1 SV=1
Length = 303
Score = 30.4 bits (67), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 37/88 (42%), Gaps = 6/88 (6%)
Query: 46 DINGSEFSLLPALDLHAEHEYKSEKMNVKALHD----GHDVYF-LLQVDGEYAYSKGENT 100
D+ G S+ A + + ++ + A+HD G D Y ++ DG A + G T
Sbjct: 21 DMRGRADSITSAAAIRLASDSETAFDQIMAIHDPRTPGTDYYIAIINCDGTQAQACGNGT 80
Query: 101 RCPSIALMFQIGEDA-TYHNMGGCKKGT 127
RC AL + G A T+ G T
Sbjct: 81 RCVVQALAAETGRHAFTFETRAGILTAT 108
>sp|A5VSQ7|DAPF_BRUO2 Diaminopimelate epimerase OS=Brucella ovis (strain ATCC 25840 /
63/290 / NCTC 10512) GN=dapF PE=1 SV=1
Length = 303
Score = 30.4 bits (67), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 37/88 (42%), Gaps = 6/88 (6%)
Query: 46 DINGSEFSLLPALDLHAEHEYKSEKMNVKALHD----GHDVYF-LLQVDGEYAYSKGENT 100
D+ G S+ A + + ++ + A+HD G D Y ++ DG A + G T
Sbjct: 21 DMRGRADSITSAAAIRLASDSETAFDQIMAIHDPRTPGTDYYIAIINCDGTQAQACGNGT 80
Query: 101 RCPSIALMFQIGEDA-TYHNMGGCKKGT 127
RC AL + G A T+ G T
Sbjct: 81 RCVVQALAAETGRHAFTFETRAGILTAT 108
>sp|C0RFH7|DAPF_BRUMB Diaminopimelate epimerase OS=Brucella melitensis biotype 2 (strain
ATCC 23457) GN=dapF PE=1 SV=1
Length = 303
Score = 30.4 bits (67), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 37/88 (42%), Gaps = 6/88 (6%)
Query: 46 DINGSEFSLLPALDLHAEHEYKSEKMNVKALHD----GHDVYF-LLQVDGEYAYSKGENT 100
D+ G S+ A + + ++ + A+HD G D Y ++ DG A + G T
Sbjct: 21 DMRGRADSITSAAAIRLASDSETAFDQIMAIHDPRTPGTDYYIAIINCDGTQAQACGNGT 80
Query: 101 RCPSIALMFQIGEDA-TYHNMGGCKKGT 127
RC AL + G A T+ G T
Sbjct: 81 RCVVQALAAETGRHAFTFETRAGILTAT 108
>sp|Q57AW6|DAPF_BRUAB Diaminopimelate epimerase OS=Brucella abortus biovar 1 (strain
9-941) GN=dapF PE=1 SV=1
Length = 303
Score = 30.4 bits (67), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 37/88 (42%), Gaps = 6/88 (6%)
Query: 46 DINGSEFSLLPALDLHAEHEYKSEKMNVKALHD----GHDVYF-LLQVDGEYAYSKGENT 100
D+ G S+ A + + ++ + A+HD G D Y ++ DG A + G T
Sbjct: 21 DMRGRADSITSAAAIRLASDSETAFDQIMAIHDPRTPGTDYYIAIINCDGTQAQACGNGT 80
Query: 101 RCPSIALMFQIGEDA-TYHNMGGCKKGT 127
RC AL + G A T+ G T
Sbjct: 81 RCVVQALAAETGRHAFTFETRAGILTAT 108
>sp|Q2YLR4|DAPF_BRUA2 Diaminopimelate epimerase OS=Brucella abortus (strain 2308) GN=dapF
PE=1 SV=1
Length = 303
Score = 30.4 bits (67), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 37/88 (42%), Gaps = 6/88 (6%)
Query: 46 DINGSEFSLLPALDLHAEHEYKSEKMNVKALHD----GHDVYF-LLQVDGEYAYSKGENT 100
D+ G S+ A + + ++ + A+HD G D Y ++ DG A + G T
Sbjct: 21 DMRGRADSITSAAAIRLASDSETAFDQIMAIHDPRTPGTDYYIAIINCDGTQAQACGNGT 80
Query: 101 RCPSIALMFQIGEDA-TYHNMGGCKKGT 127
RC AL + G A T+ G T
Sbjct: 81 RCVVQALAAETGRHAFTFETRAGILTAT 108
>sp|B2S885|DAPF_BRUA1 Diaminopimelate epimerase OS=Brucella abortus (strain S19) GN=dapF
PE=1 SV=1
Length = 303
Score = 30.4 bits (67), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 37/88 (42%), Gaps = 6/88 (6%)
Query: 46 DINGSEFSLLPALDLHAEHEYKSEKMNVKALHD----GHDVYF-LLQVDGEYAYSKGENT 100
D+ G S+ A + + ++ + A+HD G D Y ++ DG A + G T
Sbjct: 21 DMRGRADSITSAAAIRLASDSETAFDQIMAIHDPRTPGTDYYIAIINCDGTQAQACGNGT 80
Query: 101 RCPSIALMFQIGEDA-TYHNMGGCKKGT 127
RC AL + G A T+ G T
Sbjct: 81 RCVVQALAAETGRHAFTFETRAGILTAT 108
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.139 0.431
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 88,790,999
Number of Sequences: 539616
Number of extensions: 3911192
Number of successful extensions: 7391
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 7390
Number of HSP's gapped (non-prelim): 15
length of query: 218
length of database: 191,569,459
effective HSP length: 113
effective length of query: 105
effective length of database: 130,592,851
effective search space: 13712249355
effective search space used: 13712249355
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)