Query 043015
Match_columns 218
No_of_seqs 17 out of 19
Neff 2.0
Searched_HMMs 46136
Date Fri Mar 29 11:57:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043015.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043015hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF09459 EB_dh: Ethylbenzene d 99.7 1.2E-18 2.6E-23 148.0 2.4 127 42-192 2-154 (261)
2 TIGR03477 DMSO_red_II_gam DMSO 98.4 1.7E-06 3.7E-11 74.0 8.5 104 32-148 8-116 (205)
3 PF06452 DUF1083: Domain of un 95.3 0.023 5.1E-07 43.5 3.9 53 37-92 1-54 (185)
4 cd00005 CBM9 Family 9 carbohyd 94.8 0.047 1E-06 44.5 4.5 54 29-89 4-58 (186)
5 TIGR03785 marine_sort_HK prote 85.0 1.4 3.1E-05 42.4 4.8 61 26-91 72-136 (703)
6 PF10670 DUF4198: Domain of un 77.7 3.6 7.8E-05 32.3 3.9 48 33-82 117-164 (215)
7 TIGR03154 sulfolob_CbsA cytoch 72.0 10 0.00023 36.8 6.1 62 26-88 37-100 (465)
8 PRK02710 plastocyanin; Provisi 57.8 18 0.00039 27.7 4.0 17 29-45 43-60 (119)
9 KOG0729 26S proteasome regulat 54.2 4.7 0.0001 38.6 0.3 23 103-126 161-185 (435)
10 TIGR02375 pseudoazurin pseudoa 40.2 38 0.00082 26.7 3.4 75 29-114 11-89 (116)
11 COG1566 EmrA Multidrug resista 38.6 31 0.00068 32.0 3.1 44 35-78 276-339 (352)
12 COG5475 Uncharacterized small 35.2 16 0.00035 27.2 0.6 28 184-211 32-59 (60)
13 PF07215 DUF1419: Protein of u 34.8 36 0.00077 28.0 2.5 48 41-96 42-97 (111)
14 PF08194 DIM: DIM protein; In 32.0 46 0.001 22.5 2.3 12 32-43 23-34 (36)
15 PF03537 Glyco_hydro_114: Glyc 30.8 28 0.00061 25.1 1.2 19 139-157 50-68 (74)
16 PF15240 Pro-rich: Proline-ric 30.0 30 0.00066 30.0 1.5 32 4-36 2-33 (179)
17 PF07893 DUF1668: Protein of u 29.8 1.5E+02 0.0032 26.6 5.8 47 71-117 179-227 (342)
18 PF13165 DUF4001: Protein of u 27.5 19 0.00042 25.4 -0.1 17 120-136 17-36 (44)
19 PF14451 Ub-Mut7C: Mut7-C ubiq 26.0 45 0.00098 25.0 1.6 28 33-60 50-79 (81)
20 PF03072 DUF237: MG032/MG096/M 23.9 72 0.0016 26.9 2.6 30 67-96 86-119 (137)
21 cd05798 SIS_TAL_PGI SIS_TAL_PG 23.7 7 0.00015 31.8 -3.3 22 142-163 95-116 (129)
22 PF11954 DUF3471: Domain of un 20.5 3.1E+02 0.0067 19.6 5.0 39 73-113 49-87 (100)
23 cd02994 PDI_a_TMX PDIa family, 20.5 38 0.00083 23.5 0.3 15 174-188 19-34 (101)
No 1
>PF09459 EB_dh: Ethylbenzene dehydrogenase; InterPro: IPR019020 This entry represents a haem-binding domain found in cytochromes b558/566 (subunit A), c-551 and c-552, as well as in members of the type-II members of the microbial dimethyl sulphoxide (DMSO) reductase family. The DMSO reductase family is a large and rapidly expanding group of enzymes found in bacteria and archaea that share a common form of molybdenum cofactor known as bis(molybdopterin guanine dinucleotide)Mo []. In addition to the molybdopterin subunit, these enzymes also contain an iron-sulphur subunit. These include two distinct but very closely related periplasmic proteins of anaerobic respiration: selenate reductase and chlorate reductase []. Other proteins containing this subunit include dimethyl sulphide dehydrogenase and ethylbenzene dehydrogenase [, , ]. One member of the DMSO reductase family is eythylbenzene dehydrogenase, which is a heterotrimer of three subunits that catalyses the anaerobic degradation of hydrocarbons (alpha, beta and gamma subunits). This entry matches the gamma subunit, whose structure is known []. The alpha subunit contains the catalytic centre as a Molybdenum cofactor-complex. This removes an electron-pair from the hydrocarbon and passes it along an electron transport system involving iron-sulphur complexes held in the beta subunit and a Haem b molecule contained in the gamma subunit. The electron-pair is then subsequently passed to an as yet unknown receiver. The enzyme is found in a variety of different bacteria.; GO: 0020037 heme binding; PDB: 2IVF_C.
Probab=99.72 E-value=1.2e-18 Score=148.03 Aligned_cols=127 Identities=30% Similarity=0.509 Sum_probs=60.4
Q ss_pred CCcccccCcccccccccCCC--cCCcCCCCceEEEEeecCccEEEEEEecC---cee------ec--cCCcccCCceeee
Q 043015 42 DDWEDINGSEFSLLPALDLH--AEHEYKSEKMNVKALHDGHDVYFLLQVDG---EYA------YS--KGENTRCPSIALM 108 (218)
Q Consensus 42 ~DW~~i~g~efsL~pALdpd--~d~~Y~~Gkm~VKa~HDG~dvfFLLqV~G---~Y~------y~--~gen~~CpsvaLM 108 (218)
.+|++|+..+++|.|.+++. +..++...+|+|||+|||++||||||.+. ++. |. +....-+..+|+|
T Consensus 2 ~~W~~~p~~~v~L~pg~~~~p~~~~~~~~~~v~VkAa~dg~~Iyfll~W~d~t~~~~~~p~~~~~~~~~~~~yeDk~Avm 81 (261)
T PF09459_consen 2 PDWSKAPPVEVPLYPGQSSYPEPPPKGGTIPVEVKAAHDGENIYFLLEWPDPTRSYERHPDGGWVQAGEDDYYEDKVAVM 81 (261)
T ss_dssp HHHHTS-EEEEE-EE--GGG----T-----EEEEEEEE-SSEEEEEEEEE-----S------------STT----EEEEE
T ss_pred chhccCCCeEEEECCCccCCccccCCCCcEEEEEEEEECCCeEEEEEEecCCCCCccccccccccccCCCCcCcceEEEE
Confidence 58999999999999997644 44588889999999999999999999998 233 22 3567788999999
Q ss_pred eeecCCceeeecCCCCCCCCCccccccCCeeeeEEEEEecccccccccCCCCCCCCCCCCCCccccceeeeecCC-----
Q 043015 109 FQIGEDATYHNMGGCKKGTGSCTSKTCKGHEVDIMYFSIESAIPGRLYDGNPVDNSEGNGGDRFGHLVDVYVWTP----- 183 (218)
Q Consensus 109 FqiGd~AtyhNMGGC~e~~~sCt~ksC~ghEVDImHFsi~~AiPGRlYG~N~~Dn~~G~G~DrfGhLvD~YaWnP----- 183 (218)
|.+| ++.++.+. |+..+|...+.|+.++.+++ ||.|-+.. |+++|++.|++
T Consensus 82 f~~g-~v~~~~~~--------Gc~~~ch~~~~~~p~~~~~~---~~ky~~~~------------g~~vdlW~Wka~r~~~ 137 (261)
T PF09459_consen 82 FSDG-DVPYFGQD--------GCWHTCHKPLRDMPAAPIGR---GRKYMGDS------------GEPVDLWHWKASRSGM 137 (261)
T ss_dssp E----------------------------ESST--T--GG-------GT-BT------------TB-EEEEEEET-----
T ss_pred eeec-cccccccc--------cccccccCCcccccCCCccc---ceeeeCCC------------CeEEEEEEeccccccc
Confidence 9999 88888555 45678999999999998887 88888774 99999999999
Q ss_pred --------cccccCCCC
Q 043015 184 --------HCRYLDGMG 192 (218)
Q Consensus 184 --------HCRylDG~g 192 (218)
+|||.+|.|
T Consensus 138 ~~d~~~~~~r~~~~G~g 154 (261)
T PF09459_consen 138 ADDGYVFGKRRYDAGYG 154 (261)
T ss_dssp -----------------
T ss_pred ccccccccccccccccc
Confidence 899999998
No 2
>TIGR03477 DMSO_red_II_gam DMSO reductase family type II enzyme, heme b subunit. This model represents a heme b-binding subunit, typically called the gamma subunit, of various proteins that also contain a molybdopterin subunit and an iron-sulfur protein. The group includes two distinct but very closely related periplasmic proteins of anaerobic respiration, selenate reductase and chlorate reductase. Other members of this family include dimethyl sulphide dehydrogenase and ethylbenzene dehydrogenase.
Probab=98.38 E-value=1.7e-06 Score=74.02 Aligned_cols=104 Identities=20% Similarity=0.335 Sum_probs=77.4
Q ss_pred cceEeecCCCCCcccccCcccccccccCCCcCCcCCCC--ceEEEEeecCccEEEEEEecCceeeccCC--cccCCceee
Q 043015 32 LGLITLDGHADDWEDINGSEFSLLPALDLHAEHEYKSE--KMNVKALHDGHDVYFLLQVDGEYAYSKGE--NTRCPSIAL 107 (218)
Q Consensus 32 PG~iTlDG~~~DW~~i~g~efsL~pALdpd~d~~Y~~G--km~VKa~HDG~dvfFLLqV~G~Y~y~~ge--n~~CpsvaL 107 (218)
-|.+.+|-.+.-|++++..+.+|.|+---.+...|++- +|.|||+||++.|||+|+=+-+=+=.... +.-=-.||+
T Consensus 8 ~g~~~~dp~d~vW~~ap~~~V~l~~q~~~~pn~~~~~~~~~v~VkA~~n~~~Iyf~l~W~D~T~d~~~~~~d~F~DgvAv 87 (205)
T TIGR03477 8 GGDLPLDPDAPVWAGAPATEVPMVSAPLVHPFLADTGVIKTLDVQAARNGERLAVRLKWADETHDVNTDGTDSFVDGVAV 87 (205)
T ss_pred CCCCCCCcchhHHhcCCcEEEEeccccccccCccCCCcceEEEEEEEECCCeEEEEEEECCCCCccccccccccCcceEE
Confidence 36888999999999999999999777654333334333 79999999999999999876543211111 112246999
Q ss_pred eeeecCCc-eeeecCCCCCCCCCccccccCCeeeeEEEEEec
Q 043015 108 MFQIGEDA-TYHNMGGCKKGTGSCTSKTCKGHEVDIMYFSIE 148 (218)
Q Consensus 108 MFqiGd~A-tyhNMGGC~e~~~sCt~ksC~ghEVDImHFsi~ 148 (218)
+|++..+. .|.-||+ .+|.|.|-||+-.
T Consensus 88 qFP~~~~~~p~i~MG~-------------~~~pVniw~W~a~ 116 (205)
T TIGR03477 88 QFPVSRGSLPYITMGA-------------ADNPVNIWYWKAD 116 (205)
T ss_pred EcccCCCccCceecCC-------------CCCceEEEEECCC
Confidence 99999877 7888886 4789999999764
No 3
>PF06452 DUF1083: Domain of unknown function (DUF1083); InterPro: IPR010502 This entry represents the family 9 carbohydrate-binding module (CBD9), which exhibit an immunoglobulin-like beta-sandwich fold, with an additional beta-strand at the N terminus []. Bacterial extracellular cellulases and hemicellulases are involved in the hydrolysis of the major structural polysaccharides of plant cell walls. These are usually modular enzymes that contain catalytic and non-catalytic domains. The CBD9 domain binds to cellulose, xylan, as well as to a range of soluble di- and mono-saccharides, and is found in cellulose- and xylan-degrading enzymes, such as endo-1,4-beta-xylanase (3.2.1.8 from EC) [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0030246 carbohydrate binding, 0016052 carbohydrate catabolic process; PDB: 1I82_A 1I8A_A 1I8U_A.
Probab=95.34 E-value=0.023 Score=43.50 Aligned_cols=53 Identities=19% Similarity=0.377 Sum_probs=34.4
Q ss_pred ecCCCC-CcccccCcccccccccCCCcCCcCCCCceEEEEeecCccEEEEEEecCce
Q 043015 37 LDGHAD-DWEDINGSEFSLLPALDLHAEHEYKSEKMNVKALHDGHDVYFLLQVDGEY 92 (218)
Q Consensus 37 lDG~~~-DW~~i~g~efsL~pALdpd~d~~Y~~Gkm~VKa~HDG~dvfFLLqV~G~Y 92 (218)
|||..+ .|+..+ .+.+.....+..... +.-+.+||+++|.+.+||+++|--+.
T Consensus 1 IDG~~d~~W~~a~--~~~~~~~~~~~~~~~-~~~s~~~~~~wD~~~LY~~~~v~D~~ 54 (185)
T PF06452_consen 1 IDGKLDAEWKGAP--PITIFYQWWGSDWSG-EDLSTRVRLLWDDENLYFAFEVTDDT 54 (185)
T ss_dssp SSSS--GGGGGS---EEE--EEEES-T--T-TS-EEEEEEEE-SSEEEEEEEEE-SS
T ss_pred CCCcccchhcCCc--eEeeeeeecccccCC-CCccEEEEEEEeCCeEEEEEEEECCc
Confidence 699992 499998 455556666554444 67789999999999999999998777
No 4
>cd00005 CBM9 Family 9 carbohydrate-binding module (CBM), plays a role in microbial degradation of cellulose and hemicellulose found in plants; previously called cellulose-binding domain; the binding sites of the CBMs for which structures have been determined are of two general types: flat surfaces comprising predominantly aromatic residues tryptophan and tyrosine and extended shallow grooves; this domain frequently occurs in tandem.
Probab=94.84 E-value=0.047 Score=44.45 Aligned_cols=54 Identities=28% Similarity=0.461 Sum_probs=39.6
Q ss_pred eeecceEeecCCCCC-cccccCcccccccccCCCcCCcCCCCceEEEEeecCccEEEEEEec
Q 043015 29 KFKLGLITLDGHADD-WEDINGSEFSLLPALDLHAEHEYKSEKMNVKALHDGHDVYFLLQVD 89 (218)
Q Consensus 29 ef~PG~iTlDG~~~D-W~~i~g~efsL~pALdpd~d~~Y~~Gkm~VKa~HDG~dvfFLLqV~ 89 (218)
.=..|.|+|||..++ |+..+...- +....|. ++-+-+||+++|...+|++.+|-
T Consensus 4 ~~~~~~p~IDG~~de~W~~a~~~~~--~~~~~~~-----~~~~t~~k~lwDd~~LYv~~~v~ 58 (186)
T cd00005 4 KAKYGTPVIDGQVDDIWKKAKPLET--NTYVEGT-----SGATATVRVLWDEKNLYVLAEVK 58 (186)
T ss_pred eeccCCCeecCccchhHhhCcceee--eeEecCC-----CCcceEEEEEEcCCcEEEEEEEE
Confidence 345678999999999 998765432 1122331 44578999999999999999964
No 5
>TIGR03785 marine_sort_HK proteobacterial dedicated sortase system histidine kinase. This histidine kinase protein is paired with an adjacent response regulator (TIGR03787) gene. It co-occurs with a variant sortase enzyme (TIGR03784), usually in the same gene neighborhood, in proteobacterial species most of which are marine, and with an LPXTG motif-containing sortase target conserved protein (TIGR03788). Sortases and LPXTG proteins are far more common in Gram-positive bacteria, where sortase systems mediate attachment to the cell wall or cross-linking of pilin structures. We give this predicted sensor histidine kinase the gene symbol psdS, for Proteobacterial Dedicated Sortase system Sensor histidine kinase.
Probab=84.97 E-value=1.4 Score=42.41 Aligned_cols=61 Identities=26% Similarity=0.359 Sum_probs=47.0
Q ss_pred eeeeeecceEeecCCCCCcccccCcccccccccCCCcCCcCCCCceEEEEeec----CccEEEEEEecCc
Q 043015 26 VLAKFKLGLITLDGHADDWEDINGSEFSLLPALDLHAEHEYKSEKMNVKALHD----GHDVYFLLQVDGE 91 (218)
Q Consensus 26 v~Aef~PG~iTlDG~~~DW~~i~g~efsL~pALdpd~d~~Y~~Gkm~VKa~HD----G~dvfFLLqV~G~ 91 (218)
+-|-=.+|-|.|||..+||..... .|..+|.+- ...+..-..+++.|. +..+|.++||..+
T Consensus 72 ~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ly~~~~~~~~ 136 (703)
T TIGR03785 72 LYAYPLDTAIYLDGYLDDWPEYQH-RFQQYGQLQ----TAGKPKPLSLSFTHMVGKYDQYLYLLFQVTDN 136 (703)
T ss_pred eeeccCCCCeecCCcccccccccc-hhhhchhhh----hcCCCCCcceEEEEeccccCceEEEEEEEcCC
Confidence 666667899999999999999887 566776421 112223577899999 9999999999876
No 6
>PF10670 DUF4198: Domain of unknown function (DUF4198)
Probab=77.74 E-value=3.6 Score=32.26 Aligned_cols=48 Identities=19% Similarity=0.445 Sum_probs=40.4
Q ss_pred ceEeecCCCCCcccccCcccccccccCCCcCCcCCCCceEEEEeecCccE
Q 043015 33 GLITLDGHADDWEDINGSEFSLLPALDLHAEHEYKSEKMNVKALHDGHDV 82 (218)
Q Consensus 33 G~iTlDG~~~DW~~i~g~efsL~pALdpd~d~~Y~~Gkm~VKa~HDG~dv 82 (218)
=.|+.++..++|+..-|..+-+.|.-+| .+...+..++||+++||+-+
T Consensus 117 ~~v~~~~~~~~~~~~~g~~lEIvPl~~P--~~l~~g~~~~~~vl~~GkPl 164 (215)
T PF10670_consen 117 TLVNVGGPSEDWSKPVGLPLEIVPLTNP--YKLKAGDPLPFQVLFDGKPL 164 (215)
T ss_pred EEEEccCCccccccccCCcEEEEECcCc--ccccCCCEEEEEEEECCeEc
Confidence 3456788888999999999999999887 44578889999999999854
No 7
>TIGR03154 sulfolob_CbsA cytochrome b558/566, subunit A. Members of this protein family are CbsA, one subunit of a highly glycosylated, heterodimeric, mono-heme cytochrome b558/566, found in Sulfolobus acidocaldarius and several other members of the Sulfolobales, a branch of the Crenarchaeota.
Probab=72.01 E-value=10 Score=36.80 Aligned_cols=62 Identities=23% Similarity=0.269 Sum_probs=49.1
Q ss_pred eeeeeecceEeec--CCCCCcccccCcccccccccCCCcCCcCCCCceEEEEeecCccEEEEEEe
Q 043015 26 VLAKFKLGLITLD--GHADDWEDINGSEFSLLPALDLHAEHEYKSEKMNVKALHDGHDVYFLLQV 88 (218)
Q Consensus 26 v~Aef~PG~iTlD--G~~~DW~~i~g~efsL~pALdpd~d~~Y~~Gkm~VKa~HDG~dvfFLLqV 88 (218)
|.|-+++|.+-|- |..+=|+.|.=...||.|-+-- ++..=----+-|||+-.|-.||.|.+-
T Consensus 37 I~aYkV~gsadl~nPGs~sfWs~IPw~nisL~~niP~-~ptSG~Thyv~VKAAWng~~ifiL~~w 100 (465)
T TIGR03154 37 IPVYKVVGSADLSNPGSASYWSQIPWINISLTANIPM-APTSGLTHYLLVKAAWNGSWIFILEEW 100 (465)
T ss_pred ceEEEeecccccCCCCccchhhcCCcccccccccCCC-CCCCCceeEEEEEeeccCceEEEEEec
Confidence 8899999999885 7888999999999999988742 221111124679999999999999984
No 8
>PRK02710 plastocyanin; Provisional
Probab=57.81 E-value=18 Score=27.66 Aligned_cols=17 Identities=24% Similarity=0.603 Sum_probs=11.3
Q ss_pred eeecceEeec-CCCCCcc
Q 043015 29 KFKLGLITLD-GHADDWE 45 (218)
Q Consensus 29 ef~PG~iTlD-G~~~DW~ 45 (218)
.|.|-.|++. |..-.|.
T Consensus 43 ~F~P~~i~v~~Gd~V~~~ 60 (119)
T PRK02710 43 AFEPSTLTIKAGDTVKWV 60 (119)
T ss_pred EEeCCEEEEcCCCEEEEE
Confidence 6888887775 5555563
No 9
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=54.24 E-value=4.7 Score=38.56 Aligned_cols=23 Identities=52% Similarity=1.055 Sum_probs=18.8
Q ss_pred CceeeeeeecC--CceeeecCCCCCC
Q 043015 103 PSIALMFQIGE--DATYHNMGGCKKG 126 (218)
Q Consensus 103 psvaLMFqiGd--~AtyhNMGGC~e~ 126 (218)
||| +|+|+-+ |+||++.|||||-
T Consensus 161 psv-tmm~veekpdvty~dvggckeq 185 (435)
T KOG0729|consen 161 PSV-TMMQVEEKPDVTYSDVGGCKEQ 185 (435)
T ss_pred Cce-eEEEeecCCCcccccccchHHH
Confidence 777 4678876 6899999999973
No 10
>TIGR02375 pseudoazurin pseudoazurin. Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.
Probab=40.17 E-value=38 Score=26.71 Aligned_cols=75 Identities=12% Similarity=0.205 Sum_probs=44.1
Q ss_pred eeecceEeec-CCCCCcccccCccc-ccccccCCCcCCcCCCCceEEEEeecCccEEEEEEecCceeeccCCcccCCc--
Q 043015 29 KFKLGLITLD-GHADDWEDINGSEF-SLLPALDLHAEHEYKSEKMNVKALHDGHDVYFLLQVDGEYAYSKGENTRCPS-- 104 (218)
Q Consensus 29 ef~PG~iTlD-G~~~DW~~i~g~ef-sL~pALdpd~d~~Y~~Gkm~VKa~HDG~dvfFLLqV~G~Y~y~~gen~~Cps-- 104 (218)
-|.|..||+. |...-|.-.++..- ...+.+.|+....+..+. |..+=+-|+-+|.|.|.=. -+ |.
T Consensus 11 ~F~P~~v~V~~GdTV~f~n~d~~Hnv~~~~~~~p~g~~~~~s~~--------g~~~~~tF~~~G~Y~Y~C~-pH--~~~G 79 (116)
T TIGR02375 11 VFEPAYIRAAPGDTVTFVPTDKGHNVETIKGMIPEGAEAFKSKI--------NEEYTVTVTEEGVYGVKCT-PH--YGMG 79 (116)
T ss_pred EEeCCEEEECCCCEEEEEECCCCeeEEEccCCCcCCcccccCCC--------CCEEEEEeCCCEEEEEEcC-CC--ccCC
Confidence 5888888885 66666654433322 222445666666666542 5556667788999999743 22 23
Q ss_pred eeeeeeecCC
Q 043015 105 IALMFQIGED 114 (218)
Q Consensus 105 vaLMFqiGd~ 114 (218)
|---..||+.
T Consensus 80 M~G~V~Vg~~ 89 (116)
T TIGR02375 80 MVALIQVGDP 89 (116)
T ss_pred CEEEEEECCC
Confidence 4444556664
No 11
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=38.58 E-value=31 Score=32.03 Aligned_cols=44 Identities=30% Similarity=0.422 Sum_probs=28.5
Q ss_pred EeecCCCCCcccccCcccccccc-------------------cCCC-cCCcCCCCceEEEEeec
Q 043015 35 ITLDGHADDWEDINGSEFSLLPA-------------------LDLH-AEHEYKSEKMNVKALHD 78 (218)
Q Consensus 35 iTlDG~~~DW~~i~g~efsL~pA-------------------Ldpd-~d~~Y~~Gkm~VKa~HD 78 (218)
.+++|+.+--+.-.|+.|+|+|+ ||++ .+...+.+.|.|.+.-|
T Consensus 276 ~~~~G~v~~i~~~tg~~fsllp~~natgN~tkvvQRvPVrI~ld~~~~~~~~l~~g~sv~v~vd 339 (352)
T COG1566 276 GVVEGIVEGIAPATGSAFSLLPAQNATGNWTKVVQRVPVRIELDPEPLDRHLLRGGLSVVVVVD 339 (352)
T ss_pred eEEEEEEEEecCCcccccccCCCccCCCCEEEEEEeeeEEEEecCCchhcccccCceEEEEEeC
Confidence 44444444455567889999997 5553 55666677777776654
No 12
>COG5475 Uncharacterized small protein [Function unknown]
Probab=35.19 E-value=16 Score=27.25 Aligned_cols=28 Identities=32% Similarity=0.552 Sum_probs=23.6
Q ss_pred cccccCCCCCchhHhhhhheeeccceee
Q 043015 184 HCRYLDGMGPSERIQQLLKLQIGNATRM 211 (218)
Q Consensus 184 HCRylDG~gP~g~~~~~~~~~~~~~~~~ 211 (218)
-||.+||-||+-++-.--.||-|.|.|-
T Consensus 32 ~C~Wf~g~g~~~~~F~ed~Lvp~~a~~~ 59 (60)
T COG5475 32 ECRWFDGYGVKREAFHEDELVPGEASRS 59 (60)
T ss_pred EEEEecCCCcccccccccceeccccCCC
Confidence 5999999999988877778888877664
No 13
>PF07215 DUF1419: Protein of unknown function (DUF1419); InterPro: IPR009862 This family consists of several bacterial proteins of around 110 residues in length. Members of this family seem to be specific to Agrobacterium species and to Rhizobium loti (Mesorhizobium loti). The function of this family is unknown.
Probab=34.75 E-value=36 Score=27.99 Aligned_cols=48 Identities=29% Similarity=0.684 Sum_probs=35.9
Q ss_pred CCCcccccCcc----cccccccCCCcC----CcCCCCceEEEEeecCccEEEEEEecCceeecc
Q 043015 41 ADDWEDINGSE----FSLLPALDLHAE----HEYKSEKMNVKALHDGHDVYFLLQVDGEYAYSK 96 (218)
Q Consensus 41 ~~DW~~i~g~e----fsL~pALdpd~d----~~Y~~Gkm~VKa~HDG~dvfFLLqV~G~Y~y~~ 96 (218)
+..|=.|.-.+ |-+||-|.--.+ .||..|++| .|||-|.|+|..+|=.
T Consensus 42 ~GeWFEI~e~~hdyMleiLPPL~~rg~mFamrEf~tgsVT--------SVFf~l~Idg~~R~Fh 97 (111)
T PF07215_consen 42 AGEWFEITEAEHDYMLEILPPLWMRGDMFAMREFLTGSVT--------SVFFALRIDGRIRYFH 97 (111)
T ss_pred ccccEEecchhhhhHHhhCCchheecchhhhhhhccCCee--------eEEEEEEECCceeEEE
Confidence 35676666544 677888765433 689999987 6999999999988743
No 14
>PF08194 DIM: DIM protein; InterPro: IPR013172 Drosophila immune-induced molecules (DIMs) are short proteins induced during the immune response of Drosophila []. This entry includes DIMs 1 to 4 and DIM23.
Probab=31.95 E-value=46 Score=22.55 Aligned_cols=12 Identities=25% Similarity=0.484 Sum_probs=10.0
Q ss_pred cceEeecCCCCC
Q 043015 32 LGLITLDGHADD 43 (218)
Q Consensus 32 PG~iTlDG~~~D 43 (218)
||.|++.|.=.|
T Consensus 23 pG~ViING~C~d 34 (36)
T PF08194_consen 23 PGNVIINGKCID 34 (36)
T ss_pred CCeEEECceeee
Confidence 999999997544
No 15
>PF03537 Glyco_hydro_114: Glycoside-hydrolase family GH114; InterPro: IPR004352 Eighty-one archaeal-like genes, ranging in size from 4-20kb, are clustered in 15 regions of the Thermotoga maritima genome []. Conservation of gene order between T. maritima and Archaea in many of these regions suggests that lateral gene transfer may have occurred between thermophilic Eubacteria and Archaea []. One of the T. maritima sequences (hypothetical protein TM1410) shares similarity with Methanocaldococcus jannaschii (Methanococcus jannaschii) hypothetical protein MJ1477 and with hypothetical protein DR0705 from Deinococcus radiodurans. The sequences are characterised by relatively variable N- and C-terminal domains, and a more conserved central domain. They share no similarity with any other known, functionally or structurally characterised proteins. ; PDB: 2AAM_F.
Probab=30.84 E-value=28 Score=25.12 Aligned_cols=19 Identities=42% Similarity=0.204 Sum_probs=15.3
Q ss_pred eeeEEEEEecccccccccC
Q 043015 139 EVDIMYFSIESAIPGRLYD 157 (218)
Q Consensus 139 EVDImHFsi~~AiPGRlYG 157 (218)
..-|.+||||++++.|-|=
T Consensus 50 ~~vicY~s~Gs~E~~R~d~ 68 (74)
T PF03537_consen 50 KKVICYFSIGSAEDWRPDW 68 (74)
T ss_dssp -EEEEEEESSEEETTSTT-
T ss_pred CEEEEEEeCceecCCccch
Confidence 4558899999999999873
No 16
>PF15240 Pro-rich: Proline-rich
Probab=29.99 E-value=30 Score=30.05 Aligned_cols=32 Identities=25% Similarity=0.212 Sum_probs=16.4
Q ss_pred eehHHHHHHHhhhheeccccceeeeeeecceEe
Q 043015 4 LLLLLFVLSIVSIGWVNSHEESVLAKFKLGLIT 36 (218)
Q Consensus 4 ~l~l~~~~~~~~~~~~~sh~~~v~Aef~PG~iT 36 (218)
||+||.|+.|.|+.+.+.. |+|.-|=.+-.|.
T Consensus 2 LlVLLSvALLALSSAQ~~d-Edv~~e~~~~~~~ 33 (179)
T PF15240_consen 2 LLVLLSVALLALSSAQSTD-EDVSQEESPSVIS 33 (179)
T ss_pred hhHHHHHHHHHhhhccccc-cccccccCccccc
Confidence 4455555556666665444 4444444444444
No 17
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=29.82 E-value=1.5e+02 Score=26.60 Aligned_cols=47 Identities=17% Similarity=0.331 Sum_probs=31.7
Q ss_pred eEEEEeecCccEEEEEEec--CceeeccCCcccCCceeeeeeecCCcee
Q 043015 71 MNVKALHDGHDVYFLLQVD--GEYAYSKGENTRCPSIALMFQIGEDATY 117 (218)
Q Consensus 71 m~VKa~HDG~dvfFLLqV~--G~Y~y~~gen~~CpsvaLMFqiGd~Aty 117 (218)
++==|||||+.||.-.+=. |.|.|++....==..=--+.|.=.+|.|
T Consensus 179 i~sYavv~g~~I~vS~~~~~~GTysfDt~~~~W~~~GdW~LPF~G~a~y 227 (342)
T PF07893_consen 179 ITSYAVVDGRTIFVSVNGRRWGTYSFDTESHEWRKHGDWMLPFHGQAEY 227 (342)
T ss_pred EEEEEEecCCeEEEEecCCceEEEEEEcCCcceeeccceecCcCCccEE
Confidence 8888999999999977766 9999998765311111223444446666
No 18
>PF13165 DUF4001: Protein of unknown function (DUF4001)
Probab=27.53 E-value=19 Score=25.45 Aligned_cols=17 Identities=41% Similarity=0.968 Sum_probs=14.2
Q ss_pred cCCCCCCCCCccc---cccC
Q 043015 120 MGGCKKGTGSCTS---KTCK 136 (218)
Q Consensus 120 MGGC~e~~~sCt~---ksC~ 136 (218)
-|||.|-.+||.| +||-
T Consensus 17 ~ggCgECqtSCQSACKTSCT 36 (44)
T PF13165_consen 17 KGGCGECQTSCQSACKTSCT 36 (44)
T ss_pred cCCCccchhHHHHHHhccee
Confidence 4899999999988 6663
No 19
>PF14451 Ub-Mut7C: Mut7-C ubiquitin
Probab=26.04 E-value=45 Score=24.95 Aligned_cols=28 Identities=25% Similarity=0.566 Sum_probs=22.3
Q ss_pred ceEeecCCCCCcccc--cCcccccccccCC
Q 043015 33 GLITLDGHADDWEDI--NGSEFSLLPALDL 60 (218)
Q Consensus 33 G~iTlDG~~~DW~~i--~g~efsL~pALdp 60 (218)
|.|++||...+|+.+ +|-..+++|+--|
T Consensus 50 ~~i~vNG~~v~~~~~~~~Gd~v~V~P~~~~ 79 (81)
T PF14451_consen 50 GLILVNGRPVDFDYRLKDGDRVAVYPVFRP 79 (81)
T ss_pred EEEEECCEECCCcccCCCCCEEEEEecccC
Confidence 789999999999976 5667777776543
No 20
>PF03072 DUF237: MG032/MG096/MG288 family 1; InterPro: IPR004306 This domain is found entirely in Mycoplasma pneumoniae proteins of unknown function. Another related domain (IPR004319 from INTERPRO) is found entirely in mycoplasmal proteins of the MG032/MG096/MG288 family and both domains often occur together.
Probab=23.87 E-value=72 Score=26.93 Aligned_cols=30 Identities=27% Similarity=0.504 Sum_probs=24.4
Q ss_pred CCCceEEEEeecCccEEEEE---EecCc-eeecc
Q 043015 67 KSEKMNVKALHDGHDVYFLL---QVDGE-YAYSK 96 (218)
Q Consensus 67 ~~Gkm~VKa~HDG~dvfFLL---qV~G~-Y~y~~ 96 (218)
=.|+|.||-+-||.==.-++ ++||+ |+|+.
T Consensus 86 WkGkm~vk~~~DG~vp~w~~~k~dypgs~f~F~d 119 (137)
T PF03072_consen 86 WKGKMNVKFIFDGDVPSWIVGKPDYPGSLFQFTD 119 (137)
T ss_pred ccceEEEEEEEcccccceeecCCCCCCceeeecc
Confidence 35999999999998777677 77886 77877
No 21
>cd05798 SIS_TAL_PGI SIS_TAL_PGI: Transaldolase (TAL)/ Phosphoglucose isomerase (PGI). This group represents the SIS (Sugar ISomerase) PGI domain, of a multifunctional protein (TAL-PGI ) having both TAL and PGI activities. TAL_PGI contains an N-terminal TAL domain and a C-terminal PGI domain. TAL catalyzes the reversible conversion of sedoheptulose-7-phosphate (S7P) and glyceraldehyde-3-phosphate (G3P), to fructose-6-phosphate (F6P) and erythrose-4-phosphate (E4P). PGI catalyzes the reversible isomerization of F6P to glucose-6-phosphate (G6P). It has been suggested for Gluconobacter oxydans TAL_PGI that this enzyme generates E4P and G6P directly from S7P and G3P. G. oxydans TAL_PGI contributes to increased xylitol production from D-arabitol. As xylitol is an alternative natural sweetner to sucrose, the microbial conversion of D-arabitol to xylitol is of interest to food and pharmaceutical industries.
Probab=23.70 E-value=7 Score=31.77 Aligned_cols=22 Identities=23% Similarity=0.526 Sum_probs=19.6
Q ss_pred EEEEEecccccccccCCCCCCC
Q 043015 142 IMYFSIESAIPGRLYDGNPVDN 163 (218)
Q Consensus 142 ImHFsi~~AiPGRlYG~N~~Dn 163 (218)
+++|++.+|+.|+++|-||.|-
T Consensus 95 ~~~~e~ata~~g~llgINpFDQ 116 (129)
T cd05798 95 FFRWEMATAVAGAVLGINPFDQ 116 (129)
T ss_pred HHHHHHHHHHHHHhcCcCCCCC
Confidence 4589999999999999999885
No 22
>PF11954 DUF3471: Domain of unknown function (DUF3471); InterPro: IPR021860 This entry represents the C-terminal domain of a family of peptidases which belong to MEROPS peptidase family S12, clan SE. The structure of the Pyrococcus abyssi Pab87 peptidase has been determined at 2.2 A resolution []. Pab87 is a self-compartmentalizing proteases that orchestrates protein turnover through an original architecture characterised by a central catalytic chamber.
Probab=20.47 E-value=3.1e+02 Score=19.62 Aligned_cols=39 Identities=10% Similarity=0.263 Sum_probs=30.2
Q ss_pred EEEeecCccEEEEEEecCceeeccCCcccCCceeeeeeecC
Q 043015 73 VKALHDGHDVYFLLQVDGEYAYSKGENTRCPSIALMFQIGE 113 (218)
Q Consensus 73 VKa~HDG~dvfFLLqV~G~Y~y~~gen~~CpsvaLMFqiGd 113 (218)
....|-+.|.||+-..+..-.|..+++. ...++.+..+.
T Consensus 49 ~~L~~~~~d~F~~~~~~~~i~F~~d~~G--~v~~l~l~~~~ 87 (100)
T PF11954_consen 49 FELFPYSEDTFFFKWSDAQITFERDADG--KVTGLTLHQNG 87 (100)
T ss_pred EEEEEeeCCEEEEEecCCEEEEEECCCC--CEEEEEEEecc
Confidence 5556777899999999988999998877 46677776653
No 23
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=20.47 E-value=38 Score=23.50 Aligned_cols=15 Identities=33% Similarity=1.145 Sum_probs=10.9
Q ss_pred cceeeee-cCCccccc
Q 043015 174 HLVDVYV-WTPHCRYL 188 (218)
Q Consensus 174 hLvD~Ya-WnPHCRyl 188 (218)
.+++.|| |.|+|+.+
T Consensus 19 ~lv~f~a~wC~~C~~~ 34 (101)
T cd02994 19 WMIEFYAPWCPACQQL 34 (101)
T ss_pred EEEEEECCCCHHHHHH
Confidence 4777776 77888764
Done!