Query 043015
Match_columns 218
No_of_seqs 17 out of 19
Neff 2.0
Searched_HMMs 29240
Date Mon Mar 25 21:01:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043015.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043015hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ivf_C Ethylbenzene dehydrogen 99.9 1.1E-23 3.7E-28 176.8 6.1 119 34-177 11-140 (214)
2 1i82_A Xylanase A, endo-1,4-be 97.0 0.001 3.5E-08 51.0 5.4 90 27-121 2-94 (189)
3 1q2j_A MU-conotoxin SMIIIA; HE 42.7 14 0.00048 22.8 1.9 19 121-139 1-19 (26)
4 3ug3_A Alpha-L-arabinofuranosi 26.0 20 0.0007 33.1 1.0 41 150-196 51-107 (504)
5 2eke_C Ubiquitin-like protein 24.3 1.1E+02 0.0038 22.6 4.6 37 53-89 14-50 (106)
6 2c3g_A Alpha-amylase G-6; carb 24.0 1.4E+02 0.0046 22.5 5.1 58 41-117 14-72 (98)
7 3ezo_A Malonyl COA-acyl carrie 23.2 28 0.00095 29.1 1.2 21 100-121 6-26 (318)
8 1fo5_A Thioredoxin; disulfide 22.7 29 0.00098 21.3 1.0 14 175-188 6-20 (85)
9 2lqk_A Transcriptional regulat 27.1 20 0.00067 24.9 0.0 19 108-126 6-24 (70)
10 2djj_A PDI, protein disulfide- 20.1 32 0.0011 22.7 0.8 14 175-188 29-43 (121)
No 1
>2ivf_C Ethylbenzene dehydrogenase gamma-subunit; anaerobic hydrocarbon degradation, MOCO, Fe/S cluster, MO- B enzyme, DMSO reductase family; HET: MES MGD MD1 HEM; 1.88A {Aromatoleum aromaticum}
Probab=99.88 E-value=1.1e-23 Score=176.76 Aligned_cols=119 Identities=22% Similarity=0.357 Sum_probs=106.9
Q ss_pred eEeecCCCCCcccccCcccccccc-----cCCCc-----CCcCCCCceEEEEeecCccEEEEEEecCceeeccCC-cccC
Q 043015 34 LITLDGHADDWEDINGSEFSLLPA-----LDLHA-----EHEYKSEKMNVKALHDGHDVYFLLQVDGEYAYSKGE-NTRC 102 (218)
Q Consensus 34 ~iTlDG~~~DW~~i~g~efsL~pA-----Ldpd~-----d~~Y~~Gkm~VKa~HDG~dvfFLLqV~G~Y~y~~ge-n~~C 102 (218)
.|++|+++..|++++..+++|.|+ +|+++ ..++...+|+|||+|||++|||+|+.+.+++++..+ ...|
T Consensus 11 ~~~~d~~~~~W~~ap~~~v~L~~~~~~~p~~~~~~~~~~~~~~~~~~v~VkAa~dg~~i~f~l~W~D~t~~~~~~~~~f~ 90 (214)
T 2ivf_C 11 ELLLDLDAPIWAGAESTTFEMFPTPLVMVKEVSPFLALSEGHGVIKRLDVAALHNGSMIALRLKWASEKHDKIVDLNSFV 90 (214)
T ss_dssp HHHTCTTCHHHHTSCEEEEECEECCGGGGTTTCTTGGGCCSCCCCCEEEEEEEECSSEEEEEEEEECCCCCSCCSTTCCC
T ss_pred cccCCCChHHHhcCCceEEEccCCccccccccccccccccCCCCceEEEEEEEECCCeEEEEEEECCCCCCccccccccC
Confidence 568899999999999999999999 78877 788999999999999999999999999999998777 7779
Q ss_pred CceeeeeeecCCceeeecCCCCCCCCCccccccCCeeeeEEEEEecccccccccCCCCCCCCCCCCCCcccccee
Q 043015 103 PSIALMFQIGEDATYHNMGGCKKGTGSCTSKTCKGHEVDIMYFSIESAIPGRLYDGNPVDNSEGNGGDRFGHLVD 177 (218)
Q Consensus 103 psvaLMFqiGd~AtyhNMGGC~e~~~sCt~ksC~ghEVDImHFsi~~AiPGRlYG~N~~Dn~~G~G~DrfGhLvD 177 (218)
..||+||++|++++|+.||. .|++|||+||+.+. |.++|..++| ||++.+
T Consensus 91 D~vAvmfp~~~~~~~~~MG~-------------~~~~vdiw~Wka~~---------~~~~~~~a~G---fgs~~~ 140 (214)
T 2ivf_C 91 DGVGAMFPVARGAQAVTMGA-------------TGRPVNAWYWKANA---------NEPMEIVAEG---FSAVRR 140 (214)
T ss_dssp CEEEEEEESSTTCCGGGTCB-------------TTBCEEEEEEETTC---------SSCEEEEESS---TTSEEE
T ss_pred ceEEEEeEcCCCCcccccCC-------------CCcEEEEEEEecCC---------CcceeeccCC---cccccc
Confidence 99999999999999999994 67999999999875 3577777766 888877
No 2
>1i82_A Xylanase A, endo-1,4-beta-xylanase A; cellobiose complex, hydrolase; HET: BGC; 1.90A {Thermotoga maritima} SCOP: b.1.9.2 PDB: 1i8a_A* 1i8u_A
Probab=96.98 E-value=0.001 Score=51.01 Aligned_cols=90 Identities=19% Similarity=0.266 Sum_probs=56.3
Q ss_pred eeeeecceEeecCCCCC-cccccCcccccccccCCCcCCcCCCCceEEEEeecCccEEEEEEecCceeeccC-CcccCCc
Q 043015 27 LAKFKLGLITLDGHADD-WEDINGSEFSLLPALDLHAEHEYKSEKMNVKALHDGHDVYFLLQVDGEYAYSKG-ENTRCPS 104 (218)
Q Consensus 27 ~Aef~PG~iTlDG~~~D-W~~i~g~efsL~pALdpd~d~~Y~~Gkm~VKa~HDG~dvfFLLqV~G~Y~y~~g-en~~Cps 104 (218)
.|....|.|+|||..+| |+..+........ .+...+.=+-+||++||...+|++++|--+.--... .--.--+
T Consensus 2 ~a~~~~~~~~IDG~ld~~W~~a~~~~~~~~~-----~g~~~~~~~t~~~~~~d~~~LYv~~~v~D~~~~~~~~~~~~~D~ 76 (189)
T 1i82_A 2 VATAKYGTPVIDGEIDEIWNTTEEIETKAVA-----MGSLDKNATAKVRVLWDENYLYVLAIVKDPVLNKDNSNPWEQDS 76 (189)
T ss_dssp EEEEEECCCCSSSSCCGGGGGSCEEECCEEE-----ESCTTTSCEEEEEEEECSSEEEEEEEEECSSCCCCSSSGGGSSE
T ss_pred eeeeccCCceECCccchhhccCccEeeeeee-----cCCcCCCCcEEEEEEEcCCceEEEEEEECCCcccCCCCCccCCe
Confidence 46677899999999998 9987763321111 123234457899999999999999999766543211 1111234
Q ss_pred eeeeeee-cCCceeeecC
Q 043015 105 IALMFQI-GEDATYHNMG 121 (218)
Q Consensus 105 vaLMFqi-Gd~AtyhNMG 121 (218)
|-+.+.- ++..+||+.+
T Consensus 77 veifid~~~~~~~~y~~~ 94 (189)
T 1i82_A 77 VEIFIDENNHKTGYYEDD 94 (189)
T ss_dssp EEEEEETTCCCCSSCCTT
T ss_pred EEEEECCCCCCCcccccc
Confidence 5555443 3444566654
No 3
>1q2j_A MU-conotoxin SMIIIA; HET: PCA; NMR {Synthetic} SCOP: j.30.1.1 PDB: 2yen_A*
Probab=42.70 E-value=14 Score=22.83 Aligned_cols=19 Identities=32% Similarity=0.849 Sum_probs=16.8
Q ss_pred CCCCCCCCCccccccCCee
Q 043015 121 GGCKKGTGSCTSKTCKGHE 139 (218)
Q Consensus 121 GGC~e~~~sCt~ksC~ghE 139 (218)
++|=+.|.-|.++-|++|-
T Consensus 1 ~~CC~~pngCs~rWCrdha 19 (26)
T 1q2j_A 1 ERCCNGRRGCSSRWCRDHS 19 (26)
T ss_dssp CCSCSSSSCCCSSSSSSSS
T ss_pred CCccCCCCcccchhhcccc
Confidence 5788999999999999983
No 4
>3ug3_A Alpha-L-arabinofuranosidase; TIM barrel, hydrolase; 1.80A {Thermotoga maritima} PDB: 3ug4_A* 3ug5_A* 3s2c_A 4atw_A
Probab=26.05 E-value=20 Score=33.09 Aligned_cols=41 Identities=37% Similarity=0.904 Sum_probs=26.5
Q ss_pred cccccccCC-CCCCCCCCCCCC-------------cc--ccceeeeecCCcccccCCCCCchh
Q 043015 150 AIPGRLYDG-NPVDNSEGNGGD-------------RF--GHLVDVYVWTPHCRYLDGMGPSER 196 (218)
Q Consensus 150 AiPGRlYG~-N~~Dn~~G~G~D-------------rf--GhLvD~YaWnPHCRylDG~gP~g~ 196 (218)
+|=|-.||. .|+.|.+|-=.| || |..+|.|-|. |||||.+.
T Consensus 51 ~iy~gi~~~~s~~~~~~G~R~dv~~alk~l~~~~lR~PGG~~~~~y~W~------d~iGP~~~ 107 (504)
T 3ug3_A 51 CIYGGIYEEGSPLSDERGFRKDVLEAVKRIKVPNLRWPGGNFVSNYHWE------DGIGPKDQ 107 (504)
T ss_dssp STBTTTBCTTCTTBCTTSBBHHHHHHHHHTTCSEEEESCSGGGGGCCGG------GGCSSGGG
T ss_pred cccccccCCCCCCccccCcHHHHHHHHHhcCCCeEEeCCCcccCcchhc------cCcCChHH
Confidence 344444432 456676665444 67 8899998774 89999753
No 5
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=24.30 E-value=1.1e+02 Score=22.61 Aligned_cols=37 Identities=14% Similarity=0.258 Sum_probs=24.3
Q ss_pred ccccccCCCcCCcCCCCceEEEEeecCccEEEEEEec
Q 043015 53 SLLPALDLHAEHEYKSEKMNVKALHDGHDVYFLLQVD 89 (218)
Q Consensus 53 sL~pALdpd~d~~Y~~Gkm~VKa~HDG~dvfFLLqV~ 89 (218)
+|+|-=+.....+=+..+|+||+.-||+.|+|-++-.
T Consensus 14 ~~~~~~~~~~~~~~~~~~I~IkV~~~g~~i~fkIk~t 50 (106)
T 2eke_C 14 PLVPRGSEVKPEVKPETHINLKVSDGSSEIFFKIKKT 50 (106)
T ss_dssp CCCCCCCCCCCCCCCCSEEEEEEECSSCEEEEEEETT
T ss_pred CCcCCCcccCCCCCCCCeEEEEEecCCcEEEEEeCCC
Confidence 4454333333333456789999877999999887643
No 6
>2c3g_A Alpha-amylase G-6; carbohydrate-binding module, starch binding, carbohydrate binding, glycoside hydrolase, amylose, amylopectin; 2.0A {Bacillus halodurans} PDB: 2c3h_A*
Probab=24.04 E-value=1.4e+02 Score=22.47 Aligned_cols=58 Identities=17% Similarity=0.264 Sum_probs=39.8
Q ss_pred CCCcccccCcccccccccCCCcCCcCCCC-ceEEEEeecCccEEEEEEecCceeeccCCcccCCceeeeeeecCCcee
Q 043015 41 ADDWEDINGSEFSLLPALDLHAEHEYKSE-KMNVKALHDGHDVYFLLQVDGEYAYSKGENTRCPSIALMFQIGEDATY 117 (218)
Q Consensus 41 ~~DW~~i~g~efsL~pALdpd~d~~Y~~G-km~VKa~HDG~dvfFLLqV~G~Y~y~~gen~~CpsvaLMFqiGd~Aty 117 (218)
+++|+.|--.-.--.|+.. ..++||- +|++. |. |-|.|+.... -++-++|--|..++.
T Consensus 14 p~~W~~v~~Y~w~~~~~~~---~~~WPG~~~Mt~~----g~---------~wY~yt~~~~---~~anVIFndg~~~Qt 72 (98)
T 2c3g_A 14 PDSWGTPHLYYYDTNPKVD---EPTWSEAPEMEHY----EG---------DWYTHTIEGV---ESVRLLFKDRGTNQW 72 (98)
T ss_dssp CTTCCSEEEEEEEEESCCC---CCCTTTCCBCEEE----ET---------TEEEEEEETC---SEEEEEEEESSSCEE
T ss_pred CCCCCcEEEEEECCCCccc---cCCCCCcceeeEc----CC---------CEEEEEECCC---ceEEEEEECCCCccC
Confidence 5689988776666666654 5779988 99983 33 4566665533 678999988864443
No 7
>3ezo_A Malonyl COA-acyl carrier protein transacylase; ssgcid, acyl-carrier-protein S-malonyltransferase, acyltransferase, transferase; 2.05A {Burkholderia pseudomallei 1710B}
Probab=23.21 E-value=28 Score=29.07 Aligned_cols=21 Identities=19% Similarity=0.262 Sum_probs=16.9
Q ss_pred ccCCceeeeeeecCCceeeecC
Q 043015 100 TRCPSIALMFQIGEDATYHNMG 121 (218)
Q Consensus 100 ~~CpsvaLMFqiGd~AtyhNMG 121 (218)
|+-|..+.||+ |..++|..||
T Consensus 6 ~~~~~~~f~F~-GQGsQ~~gMg 26 (318)
T 3ezo_A 6 HHHMKFAFVFP-GQGSQSVGML 26 (318)
T ss_dssp ---CCEEEEEC-CTTCCCTTTT
T ss_pred ccCCCeEEEEC-CcchhhhhHH
Confidence 34499999997 9999999997
No 8
>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1
Probab=22.71 E-value=29 Score=21.29 Aligned_cols=14 Identities=21% Similarity=0.321 Sum_probs=9.3
Q ss_pred ceeeee-cCCccccc
Q 043015 175 LVDVYV-WTPHCRYL 188 (218)
Q Consensus 175 LvD~Ya-WnPHCRyl 188 (218)
++..|+ |-|+|+-.
T Consensus 6 vv~f~~~~C~~C~~~ 20 (85)
T 1fo5_A 6 IELFTSPMCPHCPAA 20 (85)
T ss_dssp EEEEECCCSSCCCTH
T ss_pred EEEEeCCCCCchHHH
Confidence 455554 88888865
No 9
>2lqk_A Transcriptional regulator; RNA polymerase interacting domain, transcription regulator; NMR {Thermus thermophilus}
Probab=27.13 E-value=20 Score=24.86 Aligned_cols=19 Identities=16% Similarity=0.178 Sum_probs=16.8
Q ss_pred eeeecCCceeeecCCCCCC
Q 043015 108 MFQIGEDATYHNMGGCKKG 126 (218)
Q Consensus 108 MFqiGd~AtyhNMGGC~e~ 126 (218)
||++||-.-|-+-|-|.=.
T Consensus 6 ~f~~GD~VVy~~hGvg~i~ 24 (70)
T 2lqk_A 6 EFRPGDKVVLPPYGVGVVA 24 (70)
Confidence 9999999999999988743
No 10
>2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp1_A
Probab=20.11 E-value=32 Score=22.67 Aligned_cols=14 Identities=43% Similarity=1.234 Sum_probs=9.2
Q ss_pred ceeeee-cCCccccc
Q 043015 175 LVDVYV-WTPHCRYL 188 (218)
Q Consensus 175 LvD~Ya-WnPHCRyl 188 (218)
+++.|| |-|+||-+
T Consensus 29 lv~f~a~wC~~C~~~ 43 (121)
T 2djj_A 29 LIEFYAPWCGHCKAL 43 (121)
T ss_dssp EEEEECSSCTTHHHH
T ss_pred EEEEECCCCHhHHHh
Confidence 566664 77777754
Done!