BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043016
(511 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VKC|A Chain A, Solution Structure Of The B3bp Smr Domain
Length = 135
Score = 38.9 bits (89), Expect = 0.007, Method: Composition-based stats.
Identities = 33/117 (28%), Positives = 59/117 (50%), Gaps = 13/117 (11%)
Query: 400 EQGKSLTKLAQKADEKASHDIFKARNKSFENVITIDLHGQHVKPAMKLLKLHLVMVSYAQ 459
+QG + ++A+ A+ +IF+ N S +DLHG HV A++ HL+ V +
Sbjct: 22 QQGTLHEQKMKEANHLAAIEIFEKVNASLLPQNVLDLHGLHVDEALE----HLMRVLEKK 77
Query: 460 SVQ--------TLRVITGCGSHGVGK-SKLKQSVIELVENEGLHWSEENRGTVLIKL 507
+ + L VITG G+H G +++K +VI+ + + +SE G + + L
Sbjct: 78 TEEFKQNGGKPYLSVITGRGNHSQGGVARIKPAVIKYLISHSFRFSEIKPGCLKVML 134
>pdb|3HSU|A Chain A, Functional Roles Of The 6-S-Cysteinyl, 8 Alpha-N1-Histidyl
Fad In Glucooligosaccharide Oxidase From Acremonium
Strictum
Length = 503
Score = 33.1 bits (74), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 45/96 (46%), Gaps = 13/96 (13%)
Query: 256 ASDCTSYSSESDL-----YDSIWSTGYNYRNNSKVLI--GSEVPSPLKASDQSDLPQKVL 308
++D T+Y+ L YDSI Y+Y NN+ G E A+ + LP+
Sbjct: 374 SNDETAYAHRDQLWLWQFYDSI----YDYENNTSPYPESGFEFMQGFVATIEDTLPEDRK 429
Query: 309 ESLFNISKSP--QHEPTTMNWRNVVKKLQALGPRFD 342
FN + + + E + WR ++KLQA+ ++D
Sbjct: 430 GKYFNYADTTLTKEEAQKLYWRGNLEKLQAIKAKYD 465
>pdb|1ZR6|A Chain A, The Crystal Structure Of An Acremonium Strictum
Glucooligosaccharide Oxidase Reveals A Novel
Flavinylation
pdb|2AXR|A Chain A, Crystal Structure Of Glucooligosaccharide Oxidase From
Acremonium Strictum: A Novel Flavinylation Of
6-S-Cysteinyl, 8alpha-N1-Histidyl Fad
Length = 503
Score = 33.1 bits (74), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 45/96 (46%), Gaps = 13/96 (13%)
Query: 256 ASDCTSYSSESDL-----YDSIWSTGYNYRNNSKVLI--GSEVPSPLKASDQSDLPQKVL 308
++D T+Y+ L YDSI Y+Y NN+ G E A+ + LP+
Sbjct: 374 SNDETAYAHRDQLWLWQFYDSI----YDYENNTSPYPESGFEFMQGFVATIEDTLPEDRK 429
Query: 309 ESLFNISKSP--QHEPTTMNWRNVVKKLQALGPRFD 342
FN + + + E + WR ++KLQA+ ++D
Sbjct: 430 GKYFNYADTTLTKEEAQKLYWRGNLEKLQAIKAKYD 465
>pdb|3FAU|A Chain A, Crystal Structure Of Human Small-Muts Related Domain
pdb|3FAU|B Chain B, Crystal Structure Of Human Small-Muts Related Domain
pdb|3FAU|C Chain C, Crystal Structure Of Human Small-Muts Related Domain
pdb|3FAU|D Chain D, Crystal Structure Of Human Small-Muts Related Domain
Length = 82
Score = 32.3 bits (72), Expect = 0.73, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 44/84 (52%), Gaps = 13/84 (15%)
Query: 433 TIDLHGQHVKPAMKLLKLHLVMVSYAQSVQ--------TLRVITGCGSHGVGK-SKLKQS 483
++DLHG HV A++ HL+ V ++ + L VITG G+H G +++K +
Sbjct: 2 SLDLHGLHVDEALE----HLMRVLEKKTEEFKQNGGKPYLSVITGRGNHSQGGVARIKPA 57
Query: 484 VIELVENEGLHWSEENRGTVLIKL 507
VI+ + + +SE G + + L
Sbjct: 58 VIKYLISHSFRFSEIKPGCLKVML 81
>pdb|3F6T|A Chain A, Crystal Structure Of Aspartate Aminotransferase (E.C.
2.6.1.1) (Yp_194538.1) From Lactobacillus Acidophilus
Ncfm At 2.15 A Resolution
pdb|3F6T|B Chain B, Crystal Structure Of Aspartate Aminotransferase (E.C.
2.6.1.1) (Yp_194538.1) From Lactobacillus Acidophilus
Ncfm At 2.15 A Resolution
Length = 533
Score = 32.0 bits (71), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 47/114 (41%), Gaps = 24/114 (21%)
Query: 304 PQKVLESLFNISKSPQHEPTTMN------WRNVVKKLQALGPRFDVSHSSSTEHQQELCA 357
PQ++ E+LF S H T+ N + ++ +KL + R+D H + + E
Sbjct: 386 PQQIXEALF----SXTHLLTSTNGGSDDPYIDIARKL--VSERYDQLHDAXQAPKDE--- 436
Query: 358 KGDEYQVFRKDAKQHWNSMKSCYQKASAAYSKGEWGYAAHLSEQGKSLTKLAQK 411
D H+ S+ Y+ A Y K Y + EQ L KLA+K
Sbjct: 437 ---------TDTNTHYYSLIDIYRLAEKIYGKEFRDYLTNNFEQVDFLLKLAEK 481
>pdb|3L6X|A Chain A, Crystal Structure Of P120 Catenin In Complex With
E-Cadherin
pdb|3L6Y|A Chain A, Crystal Structure Of P120 Catenin In Complex With
E-cadherin
pdb|3L6Y|C Chain C, Crystal Structure Of P120 Catenin In Complex With
E-cadherin
pdb|3L6Y|E Chain E, Crystal Structure Of P120 Catenin In Complex With
E-cadherin
Length = 584
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 10/83 (12%)
Query: 286 LIGSEVPSPLKASDQ---SDLPQKVLESLFNISKSPQHEPTTMNWRN--VVKKLQALGPR 340
+IG EVPS DQ + L Q SL ++ + P NWR + + + LG R
Sbjct: 6 MIGEEVPS-----DQYYWAPLAQHERGSLASLDSLRKGGPPPPNWRQPELPEVIAMLGFR 60
Query: 341 FDVSHSSSTEHQQELCAKGDEYQ 363
D S++ + Q LC + D+ +
Sbjct: 61 LDAVKSNAAAYLQHLCYRNDKVK 83
>pdb|2D9I|A Chain A, Solution Structure Of The Smr Domain Of Nedd4-Binding
Protein 2
Length = 96
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 43/84 (51%), Gaps = 13/84 (15%)
Query: 433 TIDLHGQHVKPAMKLLKLHLVMVSYAQSVQ--------TLRVITGCGSHGVGK-SKLKQS 483
+DLHG HV A++ HL+ V ++ + L VITG G+H G +++K +
Sbjct: 10 VLDLHGLHVDEALE----HLMRVLEKKTEEFKQNGGKPYLSVITGRGNHSQGGVARIKPA 65
Query: 484 VIELVENEGLHWSEENRGTVLIKL 507
VI+ + + +SE G + + L
Sbjct: 66 VIKYLISHSFRFSEIKPGCLKVML 89
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.312 0.128 0.370
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,309,308
Number of Sequences: 62578
Number of extensions: 569592
Number of successful extensions: 985
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 984
Number of HSP's gapped (non-prelim): 10
length of query: 511
length of database: 14,973,337
effective HSP length: 103
effective length of query: 408
effective length of database: 8,527,803
effective search space: 3479343624
effective search space used: 3479343624
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 54 (25.4 bits)