BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043016
(511 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q86UW6|N4BP2_HUMAN NEDD4-binding protein 2 OS=Homo sapiens GN=N4BP2 PE=1 SV=2
Length = 1770
Score = 61.2 bits (147), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 76/156 (48%), Gaps = 13/156 (8%)
Query: 361 EYQVFRKDAKQHWNSMKSCYQKASAAYSKGEWGYAAHLSEQGKSLTKLAQKADEKASHDI 420
+Y +R +A H CY KA AY G+ A ++QG + ++A+ A+ +I
Sbjct: 1618 DYDDYRAEAFLHQQKRMECYSKAKEAYRIGKKNVATFYAQQGTLHEQKMKEANHLAAIEI 1677
Query: 421 FKARNKSFENVITIDLHGQHVKPAMKLLKLHLVMVSYAQSVQ--------TLRVITGCGS 472
F+ N S +DLHG HV A++ HL+ V ++ + L VITG G+
Sbjct: 1678 FEKVNASLLPQNVLDLHGLHVDEALE----HLMRVLEKKTEEFKQNGGKPYLSVITGRGN 1733
Query: 473 HGV-GKSKLKQSVIELVENEGLHWSEENRGTVLIKL 507
H G +++K +VI+ + + +SE G + + L
Sbjct: 1734 HSQGGVARIKPAVIKYLISHSFRFSEIKPGCLKVML 1769
Score = 32.7 bits (73), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Query: 173 QSGFDKEEMEQFLYSMLGDECQFSMAVVRDVLCQCGYNVEKAMDVLLDLSA 223
++ D+EE+ + + D VV +L +C + VE AMD LL+LSA
Sbjct: 42 ETKVDQEELFTSISEIFSD---LDPDVVYLMLSECDFKVENAMDCLLELSA 89
>sp|Q08954|YP199_YEAST Smr domain-containing protein YPL199C OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=YPL199C PE=1 SV=1
Length = 240
Score = 58.9 bits (141), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 78/155 (50%), Gaps = 5/155 (3%)
Query: 360 DEYQVFRKDAKQHWNSMKSCYQKASAAYSKGEWGYAAHLSEQGKSLTKLAQKADEKASHD 419
+EYQ R+ A + + ++ AY +G+ A LSE+ K+ K A+ + +A+
Sbjct: 24 EEYQRLRRLADEAYKKRDQLSHESQTAYQQGDKKLAHELSEKSKAQLKTAEDFNMQAAEY 83
Query: 420 IFKARNKSFENVITIDLHGQHVKPAMKLLKLHLVMVSYAQSVQTLRVITGCGSHGV-GKS 478
+F N + + IDLHG +VK A+ +L+ + + + L VI G G H G +
Sbjct: 84 VF-VENNADSSSNEIDLHGLYVKEALFILQKR-IKFAIDHNEPQLNVIVGKGLHSQNGIA 141
Query: 479 KLKQSVIELVENEGL--HWSEENRGTVLIKLDGFR 511
KLK S+ E G+ H + N G ++++L G +
Sbjct: 142 KLKPSIEEFCAKHGIRNHLEKGNSGVLVLELQGVQ 176
>sp|Q9UTP4|YLL3_SCHPO Smr domain-containing protein C11H11.03c OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPAC11H11.03c PE=4
SV=1
Length = 206
Score = 52.0 bits (123), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 74/150 (49%), Gaps = 4/150 (2%)
Query: 360 DEYQVFRKDAKQHWNSMKSCYQKASAAYSKGEWGYAAHLSEQGKSLTKLAQKADEKASHD 419
+EY+ FR A + +Q+A AYS G A LS++GK + + + +A+
Sbjct: 2 EEYEKFRALASKEAEKRGYLFQEAQHAYSAGNKAKAHELSQEGKLCGERMENYNRQAASA 61
Query: 420 IFKARNKSFENVITIDLHGQHVKPAMKLLKLHLVMVSYAQSVQTLRVITGCGSHGVGK-S 478
I+ +N N IDLHG ++ A++ ++ + + L +I G G+H
Sbjct: 62 IYLYKNSQC-NPDEIDLHGLYIDEAVQAVQ-QRIENCIRRGDNHLHIIVGRGNHSANHVE 119
Query: 479 KLKQSVIELVENEGLHW-SEENRGTVLIKL 507
KL+ +++ ++E + + + SE N G + + L
Sbjct: 120 KLRPAIVRMLEQQSIKYNSEVNEGRIYVYL 149
>sp|Q8Z4T0|TALA_SALTI Transaldolase A OS=Salmonella typhi GN=talA PE=3 SV=1
Length = 316
Score = 33.5 bits (75), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Query: 121 CVQNPVDYGNKKGGSRQKRVVAVSGMVANMLGKDYVRASPRKSGRFKGVGDDQSGFDKEE 180
+++ + +G K GG+++++V A S +A G + +++ P GR D + FDKE+
Sbjct: 50 LIEDAIAWGKKHGGTQEQQVAAASDKLAVNFGAEILKSIP---GRVSTEVDARLSFDKEK 106
>sp|Q57LN7|TAL2_SALCH Transaldolase 2 OS=Salmonella choleraesuis (strain SC-B67) GN=tal2
PE=3 SV=1
Length = 316
Score = 33.5 bits (75), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Query: 121 CVQNPVDYGNKKGGSRQKRVVAVSGMVANMLGKDYVRASPRKSGRFKGVGDDQSGFDKEE 180
+++ + +G K GG+++++V A S +A G + +++ P GR D + FDKE+
Sbjct: 50 LIEDAIAWGKKHGGTQEQQVAAASDKLAVNFGAEILKSIP---GRVSTEVDARLSFDKEK 106
>sp|Q8ZN83|TALA_SALTY Transaldolase A OS=Salmonella typhimurium (strain LT2 / SGSC1412 /
ATCC 700720) GN=talA PE=3 SV=1
Length = 316
Score = 33.1 bits (74), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Query: 121 CVQNPVDYGNKKGGSRQKRVVAVSGMVANMLGKDYVRASPRKSGRFKGVGDDQSGFDKEE 180
+++ + +G K GG+++++V A S +A G + +++ P GR D + FDKE+
Sbjct: 50 LIEDAIAWGKKHGGTQEQQVAAASDKLAVNFGAEILKSIP---GRVSTEVDARLSFDKEK 106
>sp|Q5PCU4|TAL2_SALPA Transaldolase 2 OS=Salmonella paratyphi A (strain ATCC 9150 /
SARB42) GN=tal2 PE=3 SV=1
Length = 316
Score = 33.1 bits (74), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Query: 121 CVQNPVDYGNKKGGSRQKRVVAVSGMVANMLGKDYVRASPRKSGRFKGVGDDQSGFDKEE 180
+++ + +G K GG+++++V A S +A G + +++ P GR D + FDKE+
Sbjct: 50 LIEDAIAWGKKHGGTQEQQVAAASDKLAVNFGAEILKSIP---GRVSTEVDARLSFDKEK 106
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.310 0.126 0.359
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 190,259,146
Number of Sequences: 539616
Number of extensions: 7989017
Number of successful extensions: 25272
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 76
Number of HSP's that attempted gapping in prelim test: 24244
Number of HSP's gapped (non-prelim): 813
length of query: 511
length of database: 191,569,459
effective HSP length: 122
effective length of query: 389
effective length of database: 125,736,307
effective search space: 48911423423
effective search space used: 48911423423
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 63 (28.9 bits)