Query 043016
Match_columns 511
No_of_seqs 169 out of 575
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 21:03:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043016.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043016hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vkc_A NEDD4-binding protein 2 99.9 2.1E-25 7.3E-30 201.6 9.3 119 390-508 12-135 (135)
2 3fau_A NEDD4-binding protein 2 99.7 2.3E-18 8E-23 142.6 8.4 76 433-508 2-82 (82)
3 2d9i_A NEDD4-binding protein 2 99.7 1.4E-17 4.6E-22 141.8 10.2 82 430-511 7-93 (96)
4 3qd7_X Uncharacterized protein 99.3 2.6E-12 8.9E-17 116.7 10.1 82 428-510 44-133 (137)
5 2zqe_A MUTS2 protein; alpha/be 99.1 1.9E-10 6.6E-15 95.9 9.2 72 431-508 4-82 (83)
6 1otr_A Protein CUE2; protein-p 97.1 0.00092 3.1E-08 50.8 6.2 44 42-85 3-46 (49)
7 1wgl_A TOLL-interacting protei 97.0 0.0013 4.3E-08 51.7 6.2 49 177-228 8-56 (59)
8 2dhy_A CUE domain-containing p 96.8 0.0012 4.2E-08 53.1 4.9 48 175-225 15-62 (67)
9 1wji_A Tudor domain containing 95.9 0.019 6.6E-07 45.3 6.6 51 44-96 10-60 (63)
10 1otr_A Protein CUE2; protein-p 95.1 0.036 1.2E-06 42.0 5.5 42 178-222 4-45 (49)
11 1p3q_Q VPS9P, vacuolar protein 95.1 0.0089 3E-07 46.3 2.1 43 178-223 12-54 (54)
12 1vg5_A RSGI RUH-014, rhomboid 94.4 0.14 4.7E-06 41.8 7.7 42 39-82 25-66 (73)
13 1wgl_A TOLL-interacting protei 94.4 0.073 2.5E-06 41.6 5.8 43 44-86 10-52 (59)
14 1ufz_A Hypothetical protein BA 93.9 0.029 1E-06 46.8 2.7 34 188-223 44-77 (83)
15 1vg5_A RSGI RUH-014, rhomboid 93.8 0.21 7E-06 40.7 7.5 65 154-224 6-70 (73)
16 2g3q_A Protein YBL047C; endocy 91.7 0.28 9.5E-06 35.3 5.1 36 45-82 6-41 (43)
17 1z96_A DNA-damage, UBA-domain 91.2 0.32 1.1E-05 34.0 4.8 36 44-81 5-40 (40)
18 1z96_A DNA-damage, UBA-domain 91.0 0.3 1E-05 34.1 4.5 32 183-219 9-40 (40)
19 2dhy_A CUE domain-containing p 91.0 0.56 1.9E-05 37.6 6.6 47 39-85 14-60 (67)
20 1ify_A HHR23A, UV excision rep 90.7 0.3 1E-05 36.4 4.5 37 182-220 9-45 (49)
21 1vej_A Riken cDNA 4931431F19; 90.2 1.6 5.5E-05 35.6 8.7 37 45-82 31-67 (74)
22 2g3q_A Protein YBL047C; endocy 90.0 0.41 1.4E-05 34.4 4.6 33 183-220 9-41 (43)
23 1wj7_A Hypothetical protein (R 88.3 0.56 1.9E-05 40.7 5.0 41 178-223 40-80 (104)
24 1vej_A Riken cDNA 4931431F19; 87.7 0.69 2.4E-05 37.7 4.9 39 183-225 34-72 (74)
25 1veg_A NEDD8 ultimate buster-1 86.9 5.1 0.00017 33.3 9.8 40 45-86 31-70 (83)
26 1wji_A Tudor domain containing 86.8 0.82 2.8E-05 35.9 4.7 36 183-223 14-49 (63)
27 2dag_A Ubiquitin carboxyl-term 86.0 3.5 0.00012 33.3 8.2 38 44-83 10-48 (74)
28 1wgn_A UBAP1, ubiquitin associ 85.7 0.89 3.1E-05 36.1 4.3 39 42-82 18-56 (63)
29 1wr1_B Ubiquitin-like protein 84.5 0.89 3.1E-05 35.3 3.8 33 184-220 23-55 (58)
30 1veg_A NEDD8 ultimate buster-1 84.5 1.3 4.4E-05 37.0 5.0 40 179-223 30-69 (83)
31 1ify_A HHR23A, UV excision rep 84.3 1.5 5E-05 32.6 4.8 37 44-82 9-45 (49)
32 1wj7_A Hypothetical protein (R 83.7 1.6 5.5E-05 37.9 5.5 38 44-82 40-77 (104)
33 3lvj_C Sulfurtransferase TUSA; 83.0 4.1 0.00014 33.0 7.5 68 431-508 10-79 (82)
34 2cpw_A CBL-interacting protein 82.7 2.3 8E-05 33.3 5.7 36 45-82 21-57 (64)
35 2ooa_A E3 ubiquitin-protein li 82.6 1.2 4.3E-05 34.0 3.8 37 45-83 13-49 (52)
36 2cp8_A NEXT to BRCA1 gene 1 pr 82.5 1.2 4.2E-05 34.3 3.8 31 196-226 23-53 (54)
37 2dak_A Ubiquitin carboxyl-term 82.3 2 6.8E-05 33.4 5.1 37 44-82 10-46 (63)
38 2knz_A Ubiquilin-4; cytoplasm, 82.1 1.2 4.1E-05 33.7 3.6 41 180-221 10-50 (53)
39 2d9s_A CBL E3 ubiquitin protei 81.6 1.4 4.8E-05 33.9 3.8 37 47-85 13-49 (53)
40 1wr1_B Ubiquitin-like protein 81.0 4.5 0.00015 31.3 6.6 37 45-82 19-55 (58)
41 2jy5_A Ubiquilin-1; UBA, alter 78.3 1.4 4.8E-05 33.2 2.9 33 183-220 17-50 (52)
42 2di0_A Activating signal coint 77.4 1.9 6.3E-05 35.1 3.5 29 194-222 26-54 (71)
43 2dak_A Ubiquitin carboxyl-term 76.5 2.2 7.4E-05 33.2 3.6 42 176-223 8-49 (63)
44 1wiv_A UBP14, ubiquitin-specif 76.0 4.1 0.00014 32.8 5.2 37 44-82 30-66 (73)
45 2dah_A Ubiquilin-3; UBA domain 76.0 5.3 0.00018 30.4 5.5 39 45-85 11-50 (54)
46 2knz_A Ubiquilin-4; cytoplasm, 75.7 4.3 0.00015 30.6 4.9 36 45-82 13-49 (53)
47 2ekk_A UBA domain from E3 ubiq 75.1 3.5 0.00012 30.1 4.2 36 44-82 10-45 (47)
48 2bwb_A Ubiquitin-like protein 74.6 3.7 0.00013 30.2 4.2 32 185-220 14-45 (46)
49 1dv0_A DNA repair protein HHR2 74.1 2.1 7.2E-05 31.6 2.8 27 194-220 15-41 (47)
50 1q02_A Sequestosome 1; helical 74.0 4.1 0.00014 31.2 4.4 41 178-218 7-47 (52)
51 2bwb_A Ubiquitin-like protein 73.3 4 0.00014 30.0 4.1 36 45-82 9-45 (46)
52 1wiv_A UBP14, ubiquitin-specif 73.2 4.3 0.00015 32.6 4.7 42 176-223 28-69 (73)
53 2dah_A Ubiquilin-3; UBA domain 73.0 3.2 0.00011 31.6 3.7 40 183-226 14-53 (54)
54 2lbc_A Ubiquitin carboxyl-term 72.2 7.5 0.00026 33.8 6.4 37 44-82 79-115 (126)
55 1dv0_A DNA repair protein HHR2 72.1 1.7 5.8E-05 32.1 1.9 37 44-82 5-41 (47)
56 2jy5_A Ubiquilin-1; UBA, alter 72.0 8.1 0.00028 28.9 5.7 36 45-82 14-50 (52)
57 2cp9_A EF-TS, EF-TSMT, elongat 71.9 5.8 0.0002 31.5 5.0 38 45-83 11-48 (64)
58 2dna_A Unnamed protein product 71.7 5.2 0.00018 32.0 4.7 37 45-82 21-57 (67)
59 2dai_A Ubadc1, ubiquitin assoc 71.0 11 0.00039 31.0 6.9 38 44-83 30-67 (83)
60 2cp9_A EF-TS, EF-TSMT, elongat 70.5 2.8 9.7E-05 33.3 2.9 35 187-221 14-48 (64)
61 1jdq_A TM006 protein, hypothet 69.2 13 0.00045 31.2 7.1 67 432-508 27-96 (98)
62 2oo9_A E3 ubiquitin-protein li 68.5 5.2 0.00018 29.9 3.7 28 56-83 15-42 (46)
63 1whc_A RSGI RUH-027, UBA/UBX 3 68.4 6.8 0.00023 30.6 4.7 37 45-83 11-48 (64)
64 2ekk_A UBA domain from E3 ubiq 67.2 3.9 0.00013 29.8 2.9 39 175-220 7-45 (47)
65 3hz7_A Uncharacterized protein 63.3 14 0.00047 30.4 5.8 67 433-508 3-71 (87)
66 2juj_A E3 ubiquitin-protein li 62.7 6.7 0.00023 30.4 3.5 38 46-85 10-47 (56)
67 4ae4_A Ubiquitin-associated pr 62.2 5.1 0.00018 35.1 3.2 37 186-223 80-116 (118)
68 2cwb_A Chimera of immunoglobul 61.3 9 0.00031 33.3 4.6 39 182-221 67-105 (108)
69 2juj_A E3 ubiquitin-protein li 60.4 17 0.00059 28.1 5.4 45 181-227 7-51 (56)
70 2oo9_A E3 ubiquitin-protein li 60.2 14 0.00048 27.6 4.7 40 182-223 5-44 (46)
71 2dna_A Unnamed protein product 59.0 9.8 0.00034 30.4 4.1 41 182-223 20-60 (67)
72 2dkl_A Trinucleotide repeat co 59.0 9.3 0.00032 31.7 4.1 28 195-222 33-60 (85)
73 1vek_A UBP14, ubiquitin-specif 57.2 15 0.00052 30.2 5.1 38 44-83 30-68 (84)
74 2qsf_X RAD23, UV excision repa 56.9 11 0.00037 35.2 4.6 40 41-82 128-167 (171)
75 2cpw_A CBL-interacting protein 56.6 8.1 0.00028 30.2 3.2 35 183-222 24-59 (64)
76 2crn_A Ubash3A protein; compac 54.1 22 0.00076 27.7 5.3 37 45-83 11-48 (64)
77 2d9s_A CBL E3 ubiquitin protei 50.2 16 0.00054 28.1 3.7 40 185-226 13-52 (53)
78 1whc_A RSGI RUH-027, UBA/UBX 3 50.1 12 0.00042 29.1 3.2 29 195-223 21-50 (64)
79 2dkl_A Trinucleotide repeat co 48.9 27 0.00094 28.8 5.4 37 44-82 22-58 (85)
80 1wgn_A UBAP1, ubiquitin associ 48.3 21 0.00071 28.3 4.2 34 192-225 28-61 (63)
81 3k9o_A Ubiquitin-conjugating e 48.3 12 0.00041 35.1 3.5 39 180-220 162-200 (201)
82 2lbc_A Ubiquitin carboxyl-term 47.7 15 0.00052 31.9 3.8 36 45-82 5-41 (126)
83 2dai_A Ubadc1, ubiquitin assoc 46.6 13 0.00046 30.5 3.1 43 175-223 27-69 (83)
84 2dag_A Ubiquitin carboxyl-term 45.9 18 0.00063 29.0 3.8 36 183-223 14-50 (74)
85 3e46_A Ubiquitin-conjugating e 45.8 12 0.00042 36.7 3.2 39 180-220 214-252 (253)
86 2cwb_A Chimera of immunoglobul 44.9 24 0.00082 30.6 4.6 38 45-83 68-105 (108)
87 1pav_A Hypothetical protein TA 42.8 6.8 0.00023 31.0 0.7 66 432-507 7-74 (78)
88 2dal_A Protein KIAA0794; FAS a 42.5 38 0.0013 26.1 5.0 42 177-223 15-56 (62)
89 3e7l_A Transcriptional regulat 39.6 18 0.00061 27.4 2.6 30 196-226 20-49 (63)
90 1je3_A EC005, hypothetical 8.6 37.5 13 0.00044 31.3 1.7 66 432-507 28-95 (97)
91 2qsf_X RAD23, UV excision repa 37.0 32 0.0011 32.1 4.4 38 179-221 131-168 (171)
92 1umq_A Photosynthetic apparatu 35.4 22 0.00075 29.0 2.7 30 196-226 42-71 (81)
93 4ae4_A Ubiquitin-associated pr 35.3 47 0.0016 29.0 4.9 26 57-82 88-113 (118)
94 2ooa_A E3 ubiquitin-protein li 35.2 30 0.001 26.5 3.2 43 178-222 8-50 (52)
95 1eh2_A EPS15; calcium binding, 35.0 63 0.0022 26.8 5.6 50 175-226 8-61 (106)
96 2crn_A Ubash3A protein; compac 33.4 30 0.001 27.0 3.0 36 183-223 14-50 (64)
97 1eto_A FIS, factor for inversi 33.2 45 0.0015 27.9 4.3 30 195-225 58-87 (98)
98 1vdl_A Ubiquitin carboxyl-term 31.4 2E+02 0.0067 23.6 7.6 43 43-85 24-66 (80)
99 1vek_A UBP14, ubiquitin-specif 30.1 73 0.0025 26.1 5.0 40 179-223 30-70 (84)
100 2kw7_A Conserved domain protei 29.3 2.5E+02 0.0087 24.6 8.9 74 431-508 19-92 (157)
101 2dam_A ETEA protein; KIAA0887, 28.6 81 0.0028 24.7 4.9 41 177-221 17-58 (67)
102 1p3q_Q VPS9P, vacuolar protein 27.8 50 0.0017 25.3 3.3 48 37-84 6-53 (54)
103 1k6k_A ATP-dependent CLP prote 27.1 47 0.0016 28.3 3.5 34 180-219 26-59 (143)
104 1fi6_A EH domain protein REPS1 27.0 93 0.0032 24.4 5.1 47 177-225 4-55 (92)
105 1nkw_F 50S ribosomal protein L 26.7 25 0.00084 31.8 1.7 25 53-77 87-111 (146)
106 1oqy_A HHR23A, UV excision rep 25.6 35 0.0012 35.2 2.9 41 41-83 323-363 (368)
107 2chg_A Replication factor C sm 24.8 85 0.0029 27.1 4.9 47 175-221 160-207 (226)
108 1oqy_A HHR23A, UV excision rep 24.6 42 0.0015 34.6 3.2 38 43-82 168-205 (368)
109 1v92_A NSFL1 cofactor P47; 3-h 24.2 1.3E+02 0.0044 21.0 4.9 37 179-220 7-43 (46)
110 1ntc_A Protein (nitrogen regul 23.6 28 0.00097 28.2 1.4 29 196-225 52-80 (91)
111 2e2a_A Protein (enzyme IIA); h 23.5 1.8E+02 0.006 24.9 6.4 47 378-427 22-68 (105)
112 1gcc_A Ethylene responsive ele 23.3 25 0.00085 27.3 0.9 16 54-69 30-46 (63)
113 1wcr_A PTS system, N, N'-diace 23.1 1.8E+02 0.0063 24.7 6.4 45 378-425 20-64 (103)
114 2i7u_A Four-alpha-helix bundle 22.3 2.6E+02 0.0089 21.2 6.4 29 364-392 3-31 (62)
115 3k1s_A PTS system, cellobiose- 22.2 1.9E+02 0.0065 24.9 6.4 49 374-426 21-69 (109)
116 4dbg_B Ring finger protein 31; 21.6 75 0.0025 29.5 3.9 28 53-80 71-98 (162)
117 1sxj_B Activator 1 37 kDa subu 21.4 97 0.0033 29.0 4.9 47 175-221 165-212 (323)
118 3dtp_E RLC, myosin regulatory 21.1 1.4E+02 0.0049 26.1 5.7 33 42-74 54-91 (196)
119 2y1q_A CLPC N-domain, negative 21.1 55 0.0019 28.0 2.8 38 180-221 30-67 (150)
120 1div_A Ribosomal protein L9; r 21.0 30 0.001 31.3 1.2 24 54-77 90-114 (149)
121 3l8r_A PTCA, putative PTS syst 20.7 2.1E+02 0.0071 25.1 6.4 50 373-426 35-84 (120)
122 3v2d_I 50S ribosomal protein L 20.4 34 0.0011 31.0 1.3 23 54-76 89-112 (148)
123 4fm3_A Uncharacterized hypothe 20.3 3.2E+02 0.011 23.2 7.3 35 377-411 35-69 (98)
124 2dzl_A Protein FAM100B; UBA-li 20.2 2.3E+02 0.0078 22.0 6.0 41 181-226 21-61 (66)
No 1
>2vkc_A NEDD4-binding protein 2; human BCL3 binding protein, alternative splicing, homologous recombination, mismatch repair, small MUTS related; NMR {Homo sapiens}
Probab=99.92 E-value=2.1e-25 Score=201.56 Aligned_cols=119 Identities=27% Similarity=0.331 Sum_probs=90.5
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcceeecCCCChHHHHHHHHHHHHHHHh----cCCCceEE
Q 043016 390 GEWGYAAHLSEQGKSLTKLAQKADEKASHDIFKARNKSFENVITIDLHGQHVKPAMKLLKLHLVMVSY----AQSVQTLR 465 (511)
Q Consensus 390 Gd~~~A~~Lseegr~~~~karean~~AA~~If~~rN~~~~~~~~IDLHGL~V~EAl~~Lk~~L~~~~~----~~s~~~L~ 465 (511)
..+++|.+|+++|+.|.++|+++|++||+.||+.+|.....+.+|||||++|+||+.+|+.+|..+.. .....+|+
T Consensus 12 ~~~~~A~~~s~~g~~~~~~~~~~~~~Aa~~If~~~N~~~~~~~~LDLHGl~v~EA~~~L~~fL~~a~~~~~~~~g~~~v~ 91 (135)
T 2vkc_A 12 SHMLVPRGSLQQGTLHEQKMKEANHLAAIEIFEKVNASLLPQNVLDLHGLHVDEALEHLMRVLEKKTEEFKQNGGKPYLS 91 (135)
T ss_dssp -------------------CCSHHHHHHHHHHHHHHHHHGGGTEEECTTCCHHHHHHHHHHHHHHHHHHHHHTCCCSEEE
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCceEEeCCCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEE
Confidence 34689999999999999999999999999999999987656789999999999999999999987642 23457999
Q ss_pred EEEccCCCCCC-CcchHHHHHHHHHhCCCceeeCCCcEEEEEec
Q 043016 466 VITGCGSHGVG-KSKLKQSVIELVENEGLHWSEENRGTVLIKLD 508 (511)
Q Consensus 466 VITG~G~HS~G-~akLKpAV~~~Lek~gi~~~e~n~G~IlV~L~ 508 (511)
||||+|.||.+ .++||++|.+||.+.+|+|.+.++|+++|.|+
T Consensus 92 IIhGkG~hS~~g~~~Lk~~V~~~L~~~~~~~~e~g~G~~~V~Lk 135 (135)
T 2vkc_A 92 VITGRGNHSQGGVARIKPAVIKYLISHSFRFSEIKPGCLKVMLK 135 (135)
T ss_dssp EECCSCSSSCCSCCTHHHHHHHHHHTTTCEEEECSTTEEEEECC
T ss_pred EEECCCcCCCCCCchHHHHHHHHHhcCCCceeeCCCCeEEEEeC
Confidence 99999999996 69999999999999999999899999999984
No 2
>3fau_A NEDD4-binding protein 2; SMR, small-MUTS related domain, nicking endonuclease, alternative splicing, ATP-binding, coiled coil, cytoplasm, hydrolase; 1.90A {Homo sapiens} SCOP: d.68.8.1
Probab=99.75 E-value=2.3e-18 Score=142.59 Aligned_cols=76 Identities=32% Similarity=0.466 Sum_probs=60.8
Q ss_pred eeecCCCChHHHHHHHHHHHHHHHh----cCCCceEEEEEccCCCCC-CCcchHHHHHHHHHhCCCceeeCCCcEEEEEe
Q 043016 433 TIDLHGQHVKPAMKLLKLHLVMVSY----AQSVQTLRVITGCGSHGV-GKSKLKQSVIELVENEGLHWSEENRGTVLIKL 507 (511)
Q Consensus 433 ~IDLHGL~V~EAl~~Lk~~L~~~~~----~~s~~~L~VITG~G~HS~-G~akLKpAV~~~Lek~gi~~~e~n~G~IlV~L 507 (511)
+|||||+++.||+.+|+.+|..+.. ......++||||+|.||. |.++||++|.+||.+++|+|.+.|+|+|+|.|
T Consensus 2 ~lDLHGl~v~eA~~~l~~~l~~~~~~~~~~~g~~~v~II~GkG~hS~~g~~~Lk~~V~~~L~~~~~~~~e~n~G~l~V~l 81 (82)
T 3fau_A 2 SLDLHGLHVDEALEHLMRVLEKKTEEFKQNGGKPYLSVITGRGNHSQGGVARIKPAVIKYLISHSFRFSEIKPGCLKVML 81 (82)
T ss_dssp CEECTTSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCC---------CHHHHHHHHHHHTTCCEEEEETTEEEEEC
T ss_pred eEECCCCcHHHHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCCCCcchHHHHHHHHHHhCCCceeeCCCEEEEEEe
Confidence 6999999999999999999987653 133578999999999999 57999999999999999999988999999988
Q ss_pred c
Q 043016 508 D 508 (511)
Q Consensus 508 ~ 508 (511)
+
T Consensus 82 ~ 82 (82)
T 3fau_A 82 K 82 (82)
T ss_dssp -
T ss_pred C
Confidence 4
No 3
>2d9i_A NEDD4-binding protein 2; SMR domain, N4BP2, BCL-3 binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.68.8.1
Probab=99.72 E-value=1.4e-17 Score=141.81 Aligned_cols=82 Identities=29% Similarity=0.387 Sum_probs=72.8
Q ss_pred CcceeecCCCChHHHHHHHHHHHHHHHh----cCCCceEEEEEccCCCCCC-CcchHHHHHHHHHhCCCceeeCCCcEEE
Q 043016 430 NVITIDLHGQHVKPAMKLLKLHLVMVSY----AQSVQTLRVITGCGSHGVG-KSKLKQSVIELVENEGLHWSEENRGTVL 504 (511)
Q Consensus 430 ~~~~IDLHGL~V~EAl~~Lk~~L~~~~~----~~s~~~L~VITG~G~HS~G-~akLKpAV~~~Lek~gi~~~e~n~G~Il 504 (511)
.+.+|||||++++||+.+|+.+|..+.. .....+|+||||+|.||.+ .++||++|.+||.+++++|.+.++|+++
T Consensus 7 ~~~~lDLHGl~v~eA~~~L~~~L~~~~~~~~~~~g~~~v~IIhGkG~hS~~g~~~Lk~~V~~~L~~~~~~~~egg~Ga~~ 86 (96)
T 2d9i_A 7 GQNVLDLHGLHVDEALEHLMRVLEKKTEEFKQNGGKPYLSVITGRGNHSQGGVARIKPAVIKYLISHSFRFSEIKPGCLK 86 (96)
T ss_dssp SCCEEECTTSCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEEECCCSGGGTTCTTCHHHHHHHHHHHTTCCEECCSTTCEE
T ss_pred CCCeEECCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEEECcCCCCCCCcchHHHHHHHHHhhCCCccccCCCcEEE
Confidence 4689999999999999999999987642 2346799999999999995 6999999999999999999888999999
Q ss_pred EEecCCC
Q 043016 505 IKLDGFR 511 (511)
Q Consensus 505 V~L~~~r 511 (511)
|.|+..|
T Consensus 87 V~L~~~~ 93 (96)
T 2d9i_A 87 VMLKSGP 93 (96)
T ss_dssp EECCCCC
T ss_pred EEEccCC
Confidence 9998754
No 4
>3qd7_X Uncharacterized protein YDAL; alpha/beta/alpha fold, endonuclease, hydrolase; 2.30A {Escherichia coli}
Probab=99.35 E-value=2.6e-12 Score=116.67 Aligned_cols=82 Identities=12% Similarity=0.179 Sum_probs=70.2
Q ss_pred CCCcceeecCCCChHHHHHHHHHHHHHHHhcCCCceEEEEEccCCCCCC-CcchHHHHHHHHHhCCC--cee-----eCC
Q 043016 428 FENVITIDLHGQHVKPAMKLLKLHLVMVSYAQSVQTLRVITGCGSHGVG-KSKLKQSVIELVENEGL--HWS-----EEN 499 (511)
Q Consensus 428 ~~~~~~IDLHGL~V~EAl~~Lk~~L~~~~~~~s~~~L~VITG~G~HS~G-~akLKpAV~~~Lek~gi--~~~-----e~n 499 (511)
..-+.+|||||+++.||+..|..+|..+...+ ..+++||||+|.||.+ .++||++|..||.++.. .|. +++
T Consensus 44 ~~~~~~LDLHG~~~~EA~~~L~~fL~~a~~~g-~r~V~IIHGKG~gs~~~~~vLk~~V~~wL~~~~~V~~f~~a~~~~GG 122 (137)
T 3qd7_X 44 YPQQASLNLLRQPVEECRKMVFSFIQQALADG-LRNVLIIHGKGRDDKSHANIVRSYVARWLTEFDDVQAYCTALPHHGG 122 (137)
T ss_dssp CCGGGEEECTTCCHHHHHHHHHHHHHHHHHTT-CSEEEEECCCCSSTTSHHHHHHHHHHHHHHTSTTEEEEEECCGGGTG
T ss_pred CCCCeEEECCCCCHHHHHHHHHHHHHHHHHCC-CCEEEEEECCCCCCCCchHHHHHHHHHHHhcCCceeEEeecCccCCC
Confidence 34468999999999999999999999887654 5799999999999986 68999999999999885 454 368
Q ss_pred CcEEEEEecCC
Q 043016 500 RGTVLIKLDGF 510 (511)
Q Consensus 500 ~G~IlV~L~~~ 510 (511)
.|+++|.|...
T Consensus 123 ~Gat~V~Lr~~ 133 (137)
T 3qd7_X 123 SGACYVALRKT 133 (137)
T ss_dssp GGEEEEEECC-
T ss_pred CEEEEEEEEch
Confidence 99999999864
No 5
>2zqe_A MUTS2 protein; alpha/beta, ATP-binding, DNA-binding, nucleotide-binding, DN protein; 1.70A {Thermus thermophilus}
Probab=99.12 E-value=1.9e-10 Score=95.89 Aligned_cols=72 Identities=24% Similarity=0.389 Sum_probs=62.0
Q ss_pred cceeecCCCChHHHHHHHHHHHHHHHhcCCCceEEEEEccCCCCCCCcchHHHHHHHHHhCCC--ceee-----CCCcEE
Q 043016 431 VITIDLHGQHVKPAMKLLKLHLVMVSYAQSVQTLRVITGCGSHGVGKSKLKQSVIELVENEGL--HWSE-----ENRGTV 503 (511)
Q Consensus 431 ~~~IDLHGL~V~EAl~~Lk~~L~~~~~~~s~~~L~VITG~G~HS~G~akLKpAV~~~Lek~gi--~~~e-----~n~G~I 503 (511)
+.+|||||++++||...|..+|..+...+ ...+.||+|+|. ++||.+|..||.++.. .|.. .+.|++
T Consensus 4 ~~~lDLhG~~~~eA~~~l~~fl~~a~~~g-~~~v~IIHGkG~-----GvLr~~V~~~L~~~~~V~~f~~a~~~~GG~Gat 77 (83)
T 2zqe_A 4 VKEVDLRGLTVAEALLEVDQALEEARALG-LSTLRLLHGKGT-----GALRQAIREALRRDKRVESFADAPPGEGGHGVT 77 (83)
T ss_dssp CCEEECTTCCHHHHHHHHHHHHHHHHHTT-CSEEEEECCSTT-----SHHHHHHHHHHHHCTTEEEEEECCTTTTGGGEE
T ss_pred ccEEECCCCCHHHHHHHHHHHHHHHHHCC-CCEEEEEECCCc-----hHHHHHHHHHHhcCCceeEEEEcCcccCCCEEE
Confidence 47899999999999999999999887654 579999999997 6899999999999874 4542 458999
Q ss_pred EEEec
Q 043016 504 LIKLD 508 (511)
Q Consensus 504 lV~L~ 508 (511)
+|.|.
T Consensus 78 ~V~Lk 82 (83)
T 2zqe_A 78 VVALR 82 (83)
T ss_dssp EEEEC
T ss_pred EEEEe
Confidence 99986
No 6
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=97.13 E-value=0.00092 Score=50.75 Aligned_cols=44 Identities=18% Similarity=0.246 Sum_probs=39.5
Q ss_pred hhHHHHHHHHHhhCCCCHHHHHHHHHHhcCChhHHHHHHHhhcC
Q 043016 42 TKNQIIHSLTEAFGSVSLEEATSAFCEANGDVNKAEELLTALTE 85 (511)
Q Consensus 42 ~~~k~l~~LleaFgs~Sl~~ia~Ay~~A~~d~~~A~eiL~~~~~ 85 (511)
+....+..|+|-|++.+..+|.+++..|+||++.|.++|-.|..
T Consensus 3 ~~e~~v~~L~EMFP~~~~~~ik~~L~~~~Gd~d~Ai~~LL~~~~ 46 (49)
T 1otr_A 3 DHESKLSILMDMFPAISKSKLQVHLLENNNDLDLTIGLLLKEND 46 (49)
T ss_dssp SHHHHHHHHHHHCSSSCHHHHHHHHHHTTTCSHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHhccc
Confidence 33467889999999999999999999999999999999998843
No 7
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=97.01 E-value=0.0013 Score=51.71 Aligned_cols=49 Identities=22% Similarity=0.245 Sum_probs=42.0
Q ss_pred cHHHHHHHHHHhhccccccchHHHHHHHhhcCCcHHHHHHHHHcccCCCCCC
Q 043016 177 DKEEMEQFLYSMLGDECQFSMAVVRDVLCQCGYNVEKAMDVLLDLSAPSNER 228 (511)
Q Consensus 177 ~~~d~E~FL~sMLGdgfqL~~~vIrdVL~~cGyDv~ks~d~LLd~S~~~~~~ 228 (511)
..++.-+.|-.|+- .++..+|+.||..|++||+.+++.||.++..+..+
T Consensus 8 ~~ee~l~~L~emFP---~ld~~~I~~vL~a~~gdvd~aI~~LL~m~~~~~~~ 56 (59)
T 1wgl_A 8 CSEEDLKAIQDMFP---NMDQEVIRSVLEAQRGNKDAAINSLLQMGEEPSGP 56 (59)
T ss_dssp SCHHHHHHHHHHCS---SSCHHHHHHHHTTTTTCHHHHHHHHHHSSCCCCSC
T ss_pred CCHHHHHHHHHHCC---CCCHHHHHHHHHHcCCCHHHHHHHHHcCcCCCCCC
Confidence 34556667888975 59999999999999999999999999999887763
No 8
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.83 E-value=0.0012 Score=53.09 Aligned_cols=48 Identities=17% Similarity=0.230 Sum_probs=42.5
Q ss_pred CccHHHHHHHHHHhhccccccchHHHHHHHhhcCCcHHHHHHHHHcccCCC
Q 043016 175 GFDKEEMEQFLYSMLGDECQFSMAVVRDVLCQCGYNVEKAMDVLLDLSAPS 225 (511)
Q Consensus 175 ~~~~~d~E~FL~sMLGdgfqL~~~vIrdVL~~cGyDv~ks~d~LLd~S~~~ 225 (511)
....+++.+.|-.|+- +|+..||+.||..||+||+.++|.||.|+...
T Consensus 15 ~~~~~~~v~~L~~MFP---~lD~~vI~~vL~a~~G~vd~aId~LL~ms~~~ 62 (67)
T 2dhy_A 15 RLEFNQAMDDFKTMFP---NMDYDIIECVLRANSGAVDATIDQLLQMNLES 62 (67)
T ss_dssp CCCSHHHHHHHHHHCS---SSCHHHHHHHHHHHTSCHHHHHHHHHHHHHCS
T ss_pred CCCHHHHHHHHHHHCC---CCCHHHHHHHHHHcCCCHHHHHHHHHhcCCCC
Confidence 3467888888999976 59999999999999999999999999998654
No 9
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=95.87 E-value=0.019 Score=45.34 Aligned_cols=51 Identities=18% Similarity=0.248 Sum_probs=38.4
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHhcCChhHHHHHHHhhcCCCCCCCCCCCc
Q 043016 44 NQIIHSLTEAFGSVSLEEATSAFCEANGDVNKAEELLTALTEGNSEDPLTSSS 96 (511)
Q Consensus 44 ~k~l~~LleaFgs~Sl~~ia~Ay~~A~~d~~~A~eiL~~~~~~~~~~~~~~s~ 96 (511)
..+|+.|++ .| |+-+++..|+...++|++.|.+.|.+=....+...+++++
T Consensus 10 ~~~I~~L~~-MG-F~~~~a~~AL~~~~~nve~A~e~L~~~~~~~~~~~p~~~~ 60 (63)
T 1wji_A 10 EKALKHITE-MG-FSKEASRQALMDNGNNLEAALNVLLTSNKQKPVMGPPSGP 60 (63)
T ss_dssp HHHHHHHHT-TT-CCHHHHHHHHHHTTSCHHHHHHHHHHHSSCCCCCSSCCCS
T ss_pred HHHHHHHHH-cC-CCHHHHHHHHHHhCCCHHHHHHHHHHCCCCcccCCCCCCC
Confidence 467878876 55 9999999999999999999999998754443333334433
No 10
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=95.12 E-value=0.036 Score=42.00 Aligned_cols=42 Identities=17% Similarity=0.219 Sum_probs=37.4
Q ss_pred HHHHHHHHHHhhccccccchHHHHHHHhhcCCcHHHHHHHHHccc
Q 043016 178 KEEMEQFLYSMLGDECQFSMAVVRDVLCQCGYNVEKAMDVLLDLS 222 (511)
Q Consensus 178 ~~d~E~FL~sMLGdgfqL~~~vIrdVL~~cGyDv~ks~d~LLd~S 222 (511)
.++=.++|..|+= .++..+||-||..|++|++.|++.||.+.
T Consensus 4 ~e~~v~~L~EMFP---~~~~~~ik~~L~~~~Gd~d~Ai~~LL~~~ 45 (49)
T 1otr_A 4 HESKLSILMDMFP---AISKSKLQVHLLENNNDLDLTIGLLLKEN 45 (49)
T ss_dssp HHHHHHHHHHHCS---SSCHHHHHHHHHHTTTCSHHHHHHHHHHT
T ss_pred hHHHHHHHHHHCC---CCCHHHHHHHHHHcCCCHHHHHHHHHhcc
Confidence 3566789999986 48999999999999999999999999984
No 11
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=95.09 E-value=0.0089 Score=46.25 Aligned_cols=43 Identities=21% Similarity=0.347 Sum_probs=28.4
Q ss_pred HHHHHHHHHHhhccccccchHHHHHHHhhcCCcHHHHHHHHHcccC
Q 043016 178 KEEMEQFLYSMLGDECQFSMAVVRDVLCQCGYNVEKAMDVLLDLSA 223 (511)
Q Consensus 178 ~~d~E~FL~sMLGdgfqL~~~vIrdVL~~cGyDv~ks~d~LLd~S~ 223 (511)
++++=+=|-.|+- +||.+||++||-.++|++..++|.||.||.
T Consensus 12 ~~~~~~~L~~MFP---~lD~evI~~Vl~a~~G~~~~~IdaLLqms~ 54 (54)
T 1p3q_Q 12 RKDTLNTLQNMFP---DMDPSLIEDVCIAAASRIGPCVDALLSLSE 54 (54)
T ss_dssp HHHHHHHHHHHST---TSCHHHHHHHHHHSCC--CGGGC-------
T ss_pred HHHHHHHHHHHcc---cCCHHHHHHHHHHcCCCHHHHHHHHHhhcC
Confidence 3444455778887 499999999999999999999999999873
No 12
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=94.44 E-value=0.14 Score=41.77 Aligned_cols=42 Identities=21% Similarity=0.344 Sum_probs=35.2
Q ss_pred ccchhHHHHHHHHHhhCCCCHHHHHHHHHHhcCChhHHHHHHHh
Q 043016 39 QNDTKNQIIHSLTEAFGSVSLEEATSAFCEANGDVNKAEELLTA 82 (511)
Q Consensus 39 ~~~~~~k~l~~LleaFgs~Sl~~ia~Ay~~A~~d~~~A~eiL~~ 82 (511)
.+.+.+..|..|++ .| |+-+++..|+..+++|++.|.++|.+
T Consensus 25 ~~~~~ee~I~~L~e-MG-F~r~~a~~AL~~~~~nve~Ave~Ll~ 66 (73)
T 1vg5_A 25 RVAASEEQIQKLVA-MG-FDRTQVEVALAAADDDLTVAVEILMS 66 (73)
T ss_dssp CSCCCHHHHHHHHT-TT-CCHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred CCcccHHHHHHHHH-cC-CCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 33444567878876 66 99999999999999999999999995
No 13
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=94.40 E-value=0.073 Score=41.64 Aligned_cols=43 Identities=16% Similarity=0.245 Sum_probs=39.9
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHhcCChhHHHHHHHhhcCC
Q 043016 44 NQIIHSLTEAFGSVSLEEATSAFCEANGDVNKAEELLTALTEG 86 (511)
Q Consensus 44 ~k~l~~LleaFgs~Sl~~ia~Ay~~A~~d~~~A~eiL~~~~~~ 86 (511)
+.+|+.|.+.|..++.+.|.++|..-+||++.|-+.|..|...
T Consensus 10 ee~l~~L~emFP~ld~~~I~~vL~a~~gdvd~aI~~LL~m~~~ 52 (59)
T 1wgl_A 10 EEDLKAIQDMFPNMDQEVIRSVLEAQRGNKDAAINSLLQMGEE 52 (59)
T ss_dssp HHHHHHHHHHCSSSCHHHHHHHHTTTTTCHHHHHHHHHHSSCC
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHcCcCC
Confidence 4678899999999999999999999999999999999998763
No 14
>1ufz_A Hypothetical protein BAB28515; HBS1-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, translatio; NMR {Mus musculus} SCOP: a.5.9.1
Probab=93.88 E-value=0.029 Score=46.85 Aligned_cols=34 Identities=24% Similarity=0.534 Sum_probs=23.7
Q ss_pred hhccccccchHHHHHHHhhcCCcHHHHHHHHHcccC
Q 043016 188 MLGDECQFSMAVVRDVLCQCGYNVEKAMDVLLDLSA 223 (511)
Q Consensus 188 MLGdgfqL~~~vIrdVL~~cGyDv~ks~d~LLd~S~ 223 (511)
.||| -++...++++.=.|.|||+||||.+|+.+.
T Consensus 44 VlGd--sV~e~~Lv~ailk~dfD~ekALd~vL~~~~ 77 (83)
T 1ufz_A 44 VLGD--AVPDDILTEAILKHKFDVQKALSVVLEQDG 77 (83)
T ss_dssp HTTT--TSCHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHcc--cCCHHHHHHHHHHhcCCHHHHHHHHHhccc
Confidence 3454 334444444444899999999999998765
No 15
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=93.80 E-value=0.21 Score=40.71 Aligned_cols=65 Identities=22% Similarity=0.219 Sum_probs=40.6
Q ss_pred ccccccCCCCCCCCCCCCCCCCccHHHHHHHHHHhhccccccchHHHHHHHhhcCCcHHHHHHHHHcccCC
Q 043016 154 DYVRASPRKSGRFKGVGDDQSGFDKEEMEQFLYSMLGDECQFSMAVVRDVLCQCGYNVEKAMDVLLDLSAP 224 (511)
Q Consensus 154 ~y~r~~~~~~~~~~~~~~~~~~~~~~d~E~FL~sMLGdgfqL~~~vIrdVL~~cGyDv~ks~d~LLd~S~~ 224 (511)
.-.|.+|..|.-...... ......++.=+=|..| | ++.+.++..|..|++|+++|++.||+-...
T Consensus 6 ~~~r~~~~~~a~~~~~~~-~~~~~~ee~I~~L~eM---G--F~r~~a~~AL~~~~~nve~Ave~Ll~~~~p 70 (73)
T 1vg5_A 6 SGSRQAPIANAAVLPQSQ-GRVAASEEQIQKLVAM---G--FDRTQVEVALAAADDDLTVAVEILMSQSGP 70 (73)
T ss_dssp CCCCCCCCSCCCCCSSSC-CCSCCCHHHHHHHHTT---T--CCHHHHHHHHHHHTSCHHHHHHHHHTCSCS
T ss_pred ccccccccccCCCCCCCc-cCCcccHHHHHHHHHc---C--CCHHHHHHHHHHhCCCHHHHHHHHHHCCCC
Confidence 345666666651111111 1111223333445566 5 489999999999999999999999975443
No 16
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=91.74 E-value=0.28 Score=35.28 Aligned_cols=36 Identities=28% Similarity=0.378 Sum_probs=31.9
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHhcCChhHHHHHHHh
Q 043016 45 QIIHSLTEAFGSVSLEEATSAFCEANGDVNKAEELLTA 82 (511)
Q Consensus 45 k~l~~LleaFgs~Sl~~ia~Ay~~A~~d~~~A~eiL~~ 82 (511)
.+++.|++ .| |+-+++..|+...++|++.|.+.|.+
T Consensus 6 ~~i~~L~~-MG-F~~~~a~~AL~~~~~n~e~A~~~L~~ 41 (43)
T 2g3q_A 6 LAVEELSG-MG-FTEEEAHNALEKCNWDLEAATNFLLD 41 (43)
T ss_dssp HHHHHHHT-TT-SCHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred HHHHHHHH-cC-CCHHHHHHHHHHhCcCHHHHHHHHHc
Confidence 56888887 56 99999999999999999999999973
No 17
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=91.17 E-value=0.32 Score=34.02 Aligned_cols=36 Identities=33% Similarity=0.370 Sum_probs=31.4
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHhcCChhHHHHHHH
Q 043016 44 NQIIHSLTEAFGSVSLEEATSAFCEANGDVNKAEELLT 81 (511)
Q Consensus 44 ~k~l~~LleaFgs~Sl~~ia~Ay~~A~~d~~~A~eiL~ 81 (511)
...+..|++- +|+-+++..|+...++|++.|.+.|.
T Consensus 5 ~~~i~~L~~m--Gf~~~~a~~AL~~~~~n~e~A~~~L~ 40 (40)
T 1z96_A 5 NSKIAQLVSM--GFDPLEAAQALDAANGDLDVAASFLL 40 (40)
T ss_dssp HHHHHHHHHT--TCCHHHHHHHHHHTTTCHHHHHHHHC
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHcCCCHHHHHHHHC
Confidence 3568888885 69999999999999999999999883
No 18
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=90.99 E-value=0.3 Score=34.13 Aligned_cols=32 Identities=22% Similarity=0.141 Sum_probs=26.6
Q ss_pred HHHHHhhccccccchHHHHHHHhhcCCcHHHHHHHHH
Q 043016 183 QFLYSMLGDECQFSMAVVRDVLCQCGYNVEKAMDVLL 219 (511)
Q Consensus 183 ~FL~sMLGdgfqL~~~vIrdVL~~cGyDv~ks~d~LL 219 (511)
+-|..| || +...++..|..|++|++.|++.|+
T Consensus 9 ~~L~~m---Gf--~~~~a~~AL~~~~~n~e~A~~~L~ 40 (40)
T 1z96_A 9 AQLVSM---GF--DPLEAAQALDAANGDLDVAASFLL 40 (40)
T ss_dssp HHHHHT---TC--CHHHHHHHHHHTTTCHHHHHHHHC
T ss_pred HHHHHc---CC--CHHHHHHHHHHcCCCHHHHHHHHC
Confidence 346677 45 678889999999999999999985
No 19
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=90.97 E-value=0.56 Score=37.58 Aligned_cols=47 Identities=13% Similarity=0.189 Sum_probs=42.1
Q ss_pred ccchhHHHHHHHHHhhCCCCHHHHHHHHHHhcCChhHHHHHHHhhcC
Q 043016 39 QNDTKNQIIHSLTEAFGSVSLEEATSAFCEANGDVNKAEELLTALTE 85 (511)
Q Consensus 39 ~~~~~~k~l~~LleaFgs~Sl~~ia~Ay~~A~~d~~~A~eiL~~~~~ 85 (511)
+..+-..+++.|.+.|..+..+-|...+..-+||++.|-+-|..|..
T Consensus 14 ~~~~~~~~v~~L~~MFP~lD~~vI~~vL~a~~G~vd~aId~LL~ms~ 60 (67)
T 2dhy_A 14 RRLEFNQAMDDFKTMFPNMDYDIIECVLRANSGAVDATIDQLLQMNL 60 (67)
T ss_dssp CCCCSHHHHHHHHHHCSSSCHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHhcCC
Confidence 33445588999999999999999999999999999999999999965
No 20
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=90.72 E-value=0.3 Score=36.43 Aligned_cols=37 Identities=22% Similarity=0.196 Sum_probs=29.2
Q ss_pred HHHHHHhhccccccchHHHHHHHhhcCCcHHHHHHHHHc
Q 043016 182 EQFLYSMLGDECQFSMAVVRDVLCQCGYNVEKAMDVLLD 220 (511)
Q Consensus 182 E~FL~sMLGdgfqL~~~vIrdVL~~cGyDv~ks~d~LLd 220 (511)
|+-|..+..=|| +...++..|-.|++|+++|++.|+.
T Consensus 9 ~~~i~~L~~MGF--~~~~a~~AL~~~~~n~e~A~e~L~~ 45 (49)
T 1ify_A 9 ETMLTEIMSMGY--ERERVVAALRASYNNPHRAVEYLLT 45 (49)
T ss_dssp HHHHHHHHHTTC--CHHHHHHHHHTTTSCSHHHHHHHHH
T ss_pred HHHHHHHHHcCC--CHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 333333333366 9999999999999999999999986
No 21
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=90.18 E-value=1.6 Score=35.57 Aligned_cols=37 Identities=24% Similarity=0.407 Sum_probs=30.4
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHhcCChhHHHHHHHh
Q 043016 45 QIIHSLTEAFGSVSLEEATSAFCEANGDVNKAEELLTA 82 (511)
Q Consensus 45 k~l~~LleaFgs~Sl~~ia~Ay~~A~~d~~~A~eiL~~ 82 (511)
..|..|+| +|=+.-+.+..|+..++||++.|.|+|..
T Consensus 31 ~qi~qL~e-MGF~dr~~~~~AL~~t~Gnve~Ave~L~~ 67 (74)
T 1vej_A 31 QELEELKA-LGFANRDANLQALVATDGDIHAAIEMLLG 67 (74)
T ss_dssp HHHHHHHH-HTCCCHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred HHHHHHHH-cCCCcHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 56777775 56335788899999999999999999995
No 22
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=90.01 E-value=0.41 Score=34.36 Aligned_cols=33 Identities=27% Similarity=0.467 Sum_probs=27.3
Q ss_pred HHHHHhhccccccchHHHHHHHhhcCCcHHHHHHHHHc
Q 043016 183 QFLYSMLGDECQFSMAVVRDVLCQCGYNVEKAMDVLLD 220 (511)
Q Consensus 183 ~FL~sMLGdgfqL~~~vIrdVL~~cGyDv~ks~d~LLd 220 (511)
+=|..| || +...++..|..|++|++.|++.||+
T Consensus 9 ~~L~~M---GF--~~~~a~~AL~~~~~n~e~A~~~L~~ 41 (43)
T 2g3q_A 9 EELSGM---GF--TEEEAHNALEKCNWDLEAATNFLLD 41 (43)
T ss_dssp HHHHTT---TS--CHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred HHHHHc---CC--CHHHHHHHHHHhCcCHHHHHHHHHc
Confidence 335555 55 7888999999999999999999985
No 23
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=88.35 E-value=0.56 Score=40.70 Aligned_cols=41 Identities=22% Similarity=0.310 Sum_probs=33.9
Q ss_pred HHHHHHHHHHhhccccccchHHHHHHHhhcCCcHHHHHHHHHcccC
Q 043016 178 KEEMEQFLYSMLGDECQFSMAVVRDVLCQCGYNVEKAMDVLLDLSA 223 (511)
Q Consensus 178 ~~d~E~FL~sMLGdgfqL~~~vIrdVL~~cGyDv~ks~d~LLd~S~ 223 (511)
.++| +.|.-|- ..+.+.+|.+|-.|++|+.+|++.||+--.
T Consensus 40 eekV-k~L~Emt----G~seeeAr~AL~~~ngDl~~AI~~Lleg~~ 80 (104)
T 1wj7_A 40 EEKV-KQLIDIT----GKNQDECVIALHDCNGDVNRAINVLLEGNP 80 (104)
T ss_dssp HHHH-HHHHHHT----CCCHHHHHHHHHHHTSCHHHHHHHHHTCSS
T ss_pred HHHH-HHHHHhh----CCCHHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence 3444 6777774 488999999999999999999999997653
No 24
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=87.72 E-value=0.69 Score=37.73 Aligned_cols=39 Identities=21% Similarity=0.246 Sum_probs=31.6
Q ss_pred HHHHHhhccccccchHHHHHHHhhcCCcHHHHHHHHHcccCCC
Q 043016 183 QFLYSMLGDECQFSMAVVRDVLCQCGYNVEKAMDVLLDLSAPS 225 (511)
Q Consensus 183 ~FL~sMLGdgfqL~~~vIrdVL~~cGyDv~ks~d~LLd~S~~~ 225 (511)
+=|..| || -+...++.+|..++.||++|+|.|+..-+.+
T Consensus 34 ~qL~eM---GF-~dr~~~~~AL~~t~Gnve~Ave~L~~~~~~~ 72 (74)
T 1vej_A 34 EELKAL---GF-ANRDANLQALVATDGDIHAAIEMLLGASGPS 72 (74)
T ss_dssp HHHHHH---TC-CCHHHHHHHHHHTTSCHHHHHHHHHTCCCCC
T ss_pred HHHHHc---CC-CcHHHHHHHHHHhCCCHHHHHHHHHhCCCCC
Confidence 446666 56 4678899999999999999999999865544
No 25
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=86.88 E-value=5.1 Score=33.33 Aligned_cols=40 Identities=23% Similarity=0.219 Sum_probs=34.1
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHhcCChhHHHHHHHhhcCC
Q 043016 45 QIIHSLTEAFGSVSLEEATSAFCEANGDVNKAEELLTALTEG 86 (511)
Q Consensus 45 k~l~~LleaFgs~Sl~~ia~Ay~~A~~d~~~A~eiL~~~~~~ 86 (511)
..|..|++ +| |+-+++..|++.+++|++.|.|.|..-.+.
T Consensus 31 e~I~~Lv~-MG-F~~~~A~~AL~~t~gdve~A~e~L~sh~~~ 70 (83)
T 1veg_A 31 ESINQLVY-MG-FDTVVAEAALRVFGGNVQLAAQTLAHHGGS 70 (83)
T ss_dssp HHHHHHHH-HS-CCHHHHHHHHHHTTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHH-cC-CCHHHHHHHHHHcCCCHHHHHHHHHhCCCC
Confidence 45677776 45 999999999999999999999999975553
No 26
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=86.80 E-value=0.82 Score=35.94 Aligned_cols=36 Identities=31% Similarity=0.410 Sum_probs=29.3
Q ss_pred HHHHHhhccccccchHHHHHHHhhcCCcHHHHHHHHHcccC
Q 043016 183 QFLYSMLGDECQFSMAVVRDVLCQCGYNVEKAMDVLLDLSA 223 (511)
Q Consensus 183 ~FL~sMLGdgfqL~~~vIrdVL~~cGyDv~ks~d~LLd~S~ 223 (511)
+-|..| || +...++..|..|++|++.|++.||.-..
T Consensus 14 ~~L~~M---GF--~~~~a~~AL~~~~~nve~A~e~L~~~~~ 49 (63)
T 1wji_A 14 KHITEM---GF--SKEASRQALMDNGNNLEAALNVLLTSNK 49 (63)
T ss_dssp HHHHTT---TC--CHHHHHHHHHHTTSCHHHHHHHHHHHSS
T ss_pred HHHHHc---CC--CHHHHHHHHHHhCCCHHHHHHHHHHCCC
Confidence 345566 55 7788899999999999999999997543
No 27
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=86.03 E-value=3.5 Score=33.31 Aligned_cols=38 Identities=16% Similarity=0.272 Sum_probs=33.0
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHhcC-ChhHHHHHHHhh
Q 043016 44 NQIIHSLTEAFGSVSLEEATSAFCEANG-DVNKAEELLTAL 83 (511)
Q Consensus 44 ~k~l~~LleaFgs~Sl~~ia~Ay~~A~~-d~~~A~eiL~~~ 83 (511)
...|..|++ +| |+.+.+..|+...++ |++.|.+.|.+-
T Consensus 10 e~~v~~L~~-MG-F~~~~a~~AL~~t~n~~ve~A~ewL~~~ 48 (74)
T 2dag_A 10 ESVIIQLVE-MG-FPMDACRKAVYYTGNSGAEAAMNWVMSH 48 (74)
T ss_dssp HHHHHHHHH-HS-CCHHHHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHH-cC-CCHHHHHHHHHHhCCCCHHHHHHHHHhC
Confidence 457888888 55 999999999999997 899999999974
No 28
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=85.68 E-value=0.89 Score=36.06 Aligned_cols=39 Identities=18% Similarity=0.277 Sum_probs=33.4
Q ss_pred hhHHHHHHHHHhhCCCCHHHHHHHHHHhcCChhHHHHHHHh
Q 043016 42 TKNQIIHSLTEAFGSVSLEEATSAFCEANGDVNKAEELLTA 82 (511)
Q Consensus 42 ~~~k~l~~LleaFgs~Sl~~ia~Ay~~A~~d~~~A~eiL~~ 82 (511)
-|+.+++-|+ ++| ||-+++..|..+-++|++.|+|-|++
T Consensus 18 se~e~V~~Lv-sMG-Fs~~qA~kALKat~~NvErAaDWLFS 56 (63)
T 1wgn_A 18 SERQCVETVV-NMG-YSYECVLRAMKKKGENIEQILDYLFA 56 (63)
T ss_dssp HHHHHHHHHH-HHH-CCHHHHHHHHHHHCSCHHHHHHHHHH
T ss_pred chHHHHHHHH-HcC-CCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 4556676665 777 99999999999999999999999994
No 29
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=84.52 E-value=0.89 Score=35.30 Aligned_cols=33 Identities=30% Similarity=0.361 Sum_probs=27.5
Q ss_pred HHHHhhccccccchHHHHHHHhhcCCcHHHHHHHHHc
Q 043016 184 FLYSMLGDECQFSMAVVRDVLCQCGYNVEKAMDVLLD 220 (511)
Q Consensus 184 FL~sMLGdgfqL~~~vIrdVL~~cGyDv~ks~d~LLd 220 (511)
=|..| || -+...++.+|..|+.||++|+|.|+.
T Consensus 23 ~L~~M---GF-~d~~~~~~AL~~~~gnve~Ave~L~~ 55 (58)
T 1wr1_B 23 QLNDM---GF-FDFDRNVAALRRSGGSVQGALDSLLN 55 (58)
T ss_dssp HHHHH---TC-CCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHc---CC-CcHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 35555 66 46788899999999999999999985
No 30
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=84.46 E-value=1.3 Score=36.95 Aligned_cols=40 Identities=28% Similarity=0.237 Sum_probs=33.2
Q ss_pred HHHHHHHHHhhccccccchHHHHHHHhhcCCcHHHHHHHHHcccC
Q 043016 179 EEMEQFLYSMLGDECQFSMAVVRDVLCQCGYNVEKAMDVLLDLSA 223 (511)
Q Consensus 179 ~d~E~FL~sMLGdgfqL~~~vIrdVL~~cGyDv~ks~d~LLd~S~ 223 (511)
++.=+=|..| | +++..++..|.+|+.||++|++.|+.-.+
T Consensus 30 ee~I~~Lv~M---G--F~~~~A~~AL~~t~gdve~A~e~L~sh~~ 69 (83)
T 1veg_A 30 QESINQLVYM---G--FDTVVAEAALRVFGGNVQLAAQTLAHHGG 69 (83)
T ss_dssp HHHHHHHHHH---S--CCHHHHHHHHHHTTTCHHHHHHHHHHHTS
T ss_pred HHHHHHHHHc---C--CCHHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence 4444677788 4 49999999999999999999999997544
No 31
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=84.29 E-value=1.5 Score=32.64 Aligned_cols=37 Identities=16% Similarity=0.276 Sum_probs=31.6
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHhcCChhHHHHHHHh
Q 043016 44 NQIIHSLTEAFGSVSLEEATSAFCEANGDVNKAEELLTA 82 (511)
Q Consensus 44 ~k~l~~LleaFgs~Sl~~ia~Ay~~A~~d~~~A~eiL~~ 82 (511)
...|..|++- | |+-+++..|+..+++|++.|.+.|.+
T Consensus 9 ~~~i~~L~~M-G-F~~~~a~~AL~~~~~n~e~A~e~L~~ 45 (49)
T 1ify_A 9 ETMLTEIMSM-G-YERERVVAALRASYNNPHRAVEYLLT 45 (49)
T ss_dssp HHHHHHHHHT-T-CCHHHHHHHHHTTTSCSHHHHHHHHH
T ss_pred HHHHHHHHHc-C-CCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 3556666654 5 99999999999999999999999985
No 32
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=83.74 E-value=1.6 Score=37.86 Aligned_cols=38 Identities=29% Similarity=0.467 Sum_probs=33.9
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHhcCChhHHHHHHHh
Q 043016 44 NQIIHSLTEAFGSVSLEEATSAFCEANGDVNKAEELLTA 82 (511)
Q Consensus 44 ~k~l~~LleaFgs~Sl~~ia~Ay~~A~~d~~~A~eiL~~ 82 (511)
+..+..|+|-+| ||-+++-.|+.++++|++.|-+.|.+
T Consensus 40 eekVk~L~EmtG-~seeeAr~AL~~~ngDl~~AI~~Lle 77 (104)
T 1wj7_A 40 EEKVKQLIDITG-KNQDECVIALHDCNGDVNRAINVLLE 77 (104)
T ss_dssp HHHHHHHHHHTC-CCHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred HHHHHHHHHhhC-CCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 356788999877 89999999999999999999999984
No 33
>3lvj_C Sulfurtransferase TUSA; protein-protein complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PLP; 2.44A {Escherichia coli} SCOP: d.68.3.3 PDB: 3lvk_B* 1dcj_A
Probab=83.04 E-value=4.1 Score=32.97 Aligned_cols=68 Identities=9% Similarity=0.026 Sum_probs=52.3
Q ss_pred cceeecCCCChHHHHHHHHHHHHHHHhcCCCceEEEEEccCCCCCCCcchHHHHHHHHHhCCCceee--CCCcEEEEEec
Q 043016 431 VITIDLHGQHVKPAMKLLKLHLVMVSYAQSVQTLRVITGCGSHGVGKSKLKQSVIELVENEGLHWSE--ENRGTVLIKLD 508 (511)
Q Consensus 431 ~~~IDLHGL~V~EAl~~Lk~~L~~~~~~~s~~~L~VITG~G~HS~G~akLKpAV~~~Lek~gi~~~e--~n~G~IlV~L~ 508 (511)
..+||+.|+....-+-.++..|..+. ....|.|++-... -..-|..|+++.|+.+.. ..+|.+.|.|.
T Consensus 10 ~~~lD~rGl~CP~Pvl~~kkal~~l~---~G~~l~V~~dd~~-------a~~di~~~~~~~G~~~~~~~~~~~~~~i~I~ 79 (82)
T 3lvj_C 10 DHTLDALGLRCPEPVMMVRKTVRNMQ---PGETLLIIADDPA-------TTRDIPGFCTFMEHELVAKETDGLPYRYLIR 79 (82)
T ss_dssp SEEEECTTCCTTHHHHHHHHHHHTSC---TTCEEEEEECCTT-------HHHHHHHHHHHTTCEEEEEECSSSSEEEEEE
T ss_pred CEEEECCCCCCCHHHHHHHHHHHhCC---CCCEEEEEECCcc-------HHHHHHHHHHHCCCEEEEEEecCCEEEEEEE
Confidence 46899999999999999999988663 3457888875442 455699999999999863 46776666654
No 34
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=82.73 E-value=2.3 Score=33.33 Aligned_cols=36 Identities=22% Similarity=0.331 Sum_probs=31.8
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHhcC-ChhHHHHHHHh
Q 043016 45 QIIHSLTEAFGSVSLEEATSAFCEANG-DVNKAEELLTA 82 (511)
Q Consensus 45 k~l~~LleaFgs~Sl~~ia~Ay~~A~~-d~~~A~eiL~~ 82 (511)
..|..|++ +| |+-+++..|+...++ |++.|.+.|.+
T Consensus 21 ~~i~~L~~-MG-F~~~~a~~AL~~t~~~nve~A~ewL~~ 57 (64)
T 2cpw_A 21 SALDVLLS-MG-FPRARAQKALASTGGRSVQTACDWLFS 57 (64)
T ss_dssp CHHHHHHH-HT-CCHHHHHHHHHHTTTSCHHHHHHHHHS
T ss_pred HHHHHHHH-cC-CCHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 46778887 55 999999999999998 99999999984
No 35
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=82.58 E-value=1.2 Score=34.04 Aligned_cols=37 Identities=24% Similarity=0.288 Sum_probs=31.9
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHhcCChhHHHHHHHhh
Q 043016 45 QIIHSLTEAFGSVSLEEATSAFCEANGDVNKAEELLTAL 83 (511)
Q Consensus 45 k~l~~LleaFgs~Sl~~ia~Ay~~A~~d~~~A~eiL~~~ 83 (511)
..++.|++- .||-+++-.|...|++|++.|+.||.+.
T Consensus 13 ~~Ia~Lm~m--GFsr~~ai~AL~~a~nnve~AaniLlef 49 (52)
T 2ooa_A 13 AKIAKLMGE--GYAFEEVKRALEIAQNNVEVARSILREF 49 (52)
T ss_dssp HHHHHHHHT--TCCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHc--CCCHHHHHHHHHHhCCCHHHHHHHHHHh
Confidence 356677753 5999999999999999999999999875
No 36
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=82.48 E-value=1.2 Score=34.34 Aligned_cols=31 Identities=29% Similarity=0.418 Sum_probs=26.6
Q ss_pred chHHHHHHHhhcCCcHHHHHHHHHcccCCCC
Q 043016 196 SMAVVRDVLCQCGYNVEKAMDVLLDLSAPSN 226 (511)
Q Consensus 196 ~~~vIrdVL~~cGyDv~ks~d~LLd~S~~~~ 226 (511)
|...-..+|..+||||+++++.||.+..-++
T Consensus 23 D~~~N~~aL~~~~gnv~~aI~~Ll~~~~~~~ 53 (54)
T 2cp8_A 23 DRQLNLRLLKKHNYNILQVVTELLQLSGPSS 53 (54)
T ss_dssp CHHHHHHHHTTTTTCHHHHHHHHHHHSSSCC
T ss_pred cHHHHHHHHHHcCCCHHHHHHHHHhccCCCC
Confidence 6677889999999999999999998875543
No 37
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=82.25 E-value=2 Score=33.42 Aligned_cols=37 Identities=16% Similarity=0.353 Sum_probs=32.7
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHhcCChhHHHHHHHh
Q 043016 44 NQIIHSLTEAFGSVSLEEATSAFCEANGDVNKAEELLTA 82 (511)
Q Consensus 44 ~k~l~~LleaFgs~Sl~~ia~Ay~~A~~d~~~A~eiL~~ 82 (511)
...|..|++ .| |+-+++..|+...++|++.|.+.|..
T Consensus 10 ~~~v~~L~~-MG-F~~~~a~~AL~~t~~nve~A~e~L~~ 46 (63)
T 2dak_A 10 EDCVTTIVS-MG-FSRDQALKALRATNNSLERAVDWIFS 46 (63)
T ss_dssp HHHHHHHHH-HT-CCHHHHHHHHHHTTSCSHHHHHHHHH
T ss_pred HHHHHHHHH-cC-CCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 356888887 55 89999999999999999999999986
No 38
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=82.13 E-value=1.2 Score=33.65 Aligned_cols=41 Identities=17% Similarity=0.141 Sum_probs=30.1
Q ss_pred HHHHHHHHhhccccccchHHHHHHHhhcCCcHHHHHHHHHcc
Q 043016 180 EMEQFLYSMLGDECQFSMAVVRDVLCQCGYNVEKAMDVLLDL 221 (511)
Q Consensus 180 d~E~FL~sMLGdgfqL~~~vIrdVL~~cGyDv~ks~d~LLd~ 221 (511)
+.++-|-.+..=||. +...++.+|..|+.||++|++.|+..
T Consensus 10 ~~~~~l~~L~~MGF~-~~~~~~~AL~~t~gnve~Ave~L~~~ 50 (53)
T 2knz_A 10 RFQQQLEQLNSMGFI-NREANLQALIATGGDINAAIERLLGS 50 (53)
T ss_dssp HHHHHHHHHHTTTCC-CHHHHHHHHHHHTSCHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCCC-CHHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 334444444433441 78889999999999999999999874
No 39
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=81.63 E-value=1.4 Score=33.88 Aligned_cols=37 Identities=19% Similarity=0.336 Sum_probs=31.8
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHhcCChhHHHHHHHhhcC
Q 043016 47 IHSLTEAFGSVSLEEATSAFCEANGDVNKAEELLTALTE 85 (511)
Q Consensus 47 l~~LleaFgs~Sl~~ia~Ay~~A~~d~~~A~eiL~~~~~ 85 (511)
++.|++- .|+-+++-.|...|++|++.|+.||.+.-.
T Consensus 13 I~~L~~l--GF~r~~ai~AL~~a~nnve~Aa~iL~ef~~ 49 (53)
T 2d9s_A 13 IERLMSQ--GYSYQDIQKALVIAHNNIEMAKNILREFSG 49 (53)
T ss_dssp HHHHHHH--TCCHHHHHHHHHHTTTCHHHHHHHHHHHTS
T ss_pred HHHHHHc--CCCHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 6677653 599999999999999999999999997543
No 40
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=81.03 E-value=4.5 Score=31.31 Aligned_cols=37 Identities=19% Similarity=0.351 Sum_probs=29.6
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHhcCChhHHHHHHHh
Q 043016 45 QIIHSLTEAFGSVSLEEATSAFCEANGDVNKAEELLTA 82 (511)
Q Consensus 45 k~l~~LleaFgs~Sl~~ia~Ay~~A~~d~~~A~eiL~~ 82 (511)
..|..|.+ +|=..-+.+..|...++||++.|.|+|..
T Consensus 19 ~qi~~L~~-MGF~d~~~~~~AL~~~~gnve~Ave~L~~ 55 (58)
T 1wr1_B 19 HQLRQLND-MGFFDFDRNVAALRRSGGSVQGALDSLLN 55 (58)
T ss_dssp HHHHHHHH-HTCCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHH-cCCCcHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 45766665 56335677799999999999999999984
No 41
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=78.30 E-value=1.4 Score=33.17 Aligned_cols=33 Identities=24% Similarity=0.335 Sum_probs=27.6
Q ss_pred HHHHHhhcccccc-chHHHHHHHhhcCCcHHHHHHHHHc
Q 043016 183 QFLYSMLGDECQF-SMAVVRDVLCQCGYNVEKAMDVLLD 220 (511)
Q Consensus 183 ~FL~sMLGdgfqL-~~~vIrdVL~~cGyDv~ks~d~LLd 220 (511)
+-|..| | + +...++.+|..||.||++|++.|+.
T Consensus 17 ~~L~~M---G--F~~~~~~~~AL~~t~gn~e~A~e~L~~ 50 (52)
T 2jy5_A 17 EQLSAM---G--FLNREANLQALIATGGDINAAIERLLG 50 (52)
T ss_dssp HHHHHT---T--CCCHHHHHHHHHHHTTCHHHHHHHHTT
T ss_pred HHHHHc---C--CCCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 445666 3 5 7888999999999999999999985
No 42
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=77.39 E-value=1.9 Score=35.06 Aligned_cols=29 Identities=14% Similarity=0.258 Sum_probs=26.2
Q ss_pred ccchHHHHHHHhhcCCcHHHHHHHHHccc
Q 043016 194 QFSMAVVRDVLCQCGYNVEKAMDVLLDLS 222 (511)
Q Consensus 194 qL~~~vIrdVL~~cGyDv~ks~d~LLd~S 222 (511)
.|+.+.|+..|..|+||||..+..||+=+
T Consensus 26 dLG~gfi~~~L~~y~~nvE~vin~LLE~~ 54 (71)
T 2di0_A 26 DLGEGFILACLEYYHYDPEQVINNILEER 54 (71)
T ss_dssp SSCHHHHHHHHHHTTTCHHHHHHHHHTTC
T ss_pred cCCHHHHHHHHHHhCCCHHHHHHHHHccC
Confidence 47778899999999999999999999954
No 43
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=76.54 E-value=2.2 Score=33.21 Aligned_cols=42 Identities=17% Similarity=0.130 Sum_probs=32.2
Q ss_pred ccHHHHHHHHHHhhccccccchHHHHHHHhhcCCcHHHHHHHHHcccC
Q 043016 176 FDKEEMEQFLYSMLGDECQFSMAVVRDVLCQCGYNVEKAMDVLLDLSA 223 (511)
Q Consensus 176 ~~~~d~E~FL~sMLGdgfqL~~~vIrdVL~~cGyDv~ks~d~LLd~S~ 223 (511)
+..+.+ +=|..| || ++..++..|-.|++|++.|++.||.-..
T Consensus 8 ~~~~~v-~~L~~M---GF--~~~~a~~AL~~t~~nve~A~e~L~~~~~ 49 (63)
T 2dak_A 8 PPEDCV-TTIVSM---GF--SRDQALKALRATNNSLERAVDWIFSHID 49 (63)
T ss_dssp CCHHHH-HHHHHH---TC--CHHHHHHHHHHTTSCSHHHHHHHHHHHH
T ss_pred CCHHHH-HHHHHc---CC--CHHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence 344444 445566 55 6899999999999999999999997543
No 44
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=76.03 E-value=4.1 Score=32.81 Aligned_cols=37 Identities=24% Similarity=0.427 Sum_probs=32.1
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHhcCChhHHHHHHHh
Q 043016 44 NQIIHSLTEAFGSVSLEEATSAFCEANGDVNKAEELLTA 82 (511)
Q Consensus 44 ~k~l~~LleaFgs~Sl~~ia~Ay~~A~~d~~~A~eiL~~ 82 (511)
...|..|++ .| |+-+++..|++..++|++.|.+.|.+
T Consensus 30 ~~~v~~L~~-MG-F~~~~a~~AL~~t~~nve~Ave~L~~ 66 (73)
T 1wiv_A 30 QSSVDTLLS-FG-FAEDVARKALKASGGDIEKATDWVFN 66 (73)
T ss_dssp HHHHHHHHH-HT-CCHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHH-cC-CCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 356777775 55 99999999999999999999999995
No 45
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=76.02 E-value=5.3 Score=30.38 Aligned_cols=39 Identities=26% Similarity=0.299 Sum_probs=30.1
Q ss_pred HHHHHHHHhhCCCCHHH-HHHHHHHhcCChhHHHHHHHhhcC
Q 043016 45 QIIHSLTEAFGSVSLEE-ATSAFCEANGDVNKAEELLTALTE 85 (511)
Q Consensus 45 k~l~~LleaFgs~Sl~~-ia~Ay~~A~~d~~~A~eiL~~~~~ 85 (511)
..|..|.+ +| |+=++ +..|+..++||++.|.++|....+
T Consensus 11 ~~l~~L~~-MG-F~d~~~n~~AL~~~~Gdv~~Ave~L~~~~~ 50 (54)
T 2dah_A 11 VQLEQLRS-MG-FLNREANLQALIATGGDVDAAVEKLRQSSG 50 (54)
T ss_dssp HHHHHHHH-HT-CCCHHHHHHHHHHHTSCHHHHHHHHHHHSC
T ss_pred HHHHHHHH-cC-CCcHHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence 34666664 46 75555 699999999999999999997543
No 46
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=75.73 E-value=4.3 Score=30.58 Aligned_cols=36 Identities=31% Similarity=0.413 Sum_probs=30.7
Q ss_pred HHHHHHHHhhCCC-CHHHHHHHHHHhcCChhHHHHHHHh
Q 043016 45 QIIHSLTEAFGSV-SLEEATSAFCEANGDVNKAEELLTA 82 (511)
Q Consensus 45 k~l~~LleaFgs~-Sl~~ia~Ay~~A~~d~~~A~eiL~~ 82 (511)
..|..|++ +| | .-+.+..|+..++||++.|.++|..
T Consensus 13 ~~l~~L~~-MG-F~~~~~~~~AL~~t~gnve~Ave~L~~ 49 (53)
T 2knz_A 13 QQLEQLNS-MG-FINREANLQALIATGGDINAAIERLLG 49 (53)
T ss_dssp HHHHHHHT-TT-CCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHH-cC-CCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 45666665 56 6 8899999999999999999999985
No 47
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=75.09 E-value=3.5 Score=30.07 Aligned_cols=36 Identities=25% Similarity=0.408 Sum_probs=30.4
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHhcCChhHHHHHHHh
Q 043016 44 NQIIHSLTEAFGSVSLEEATSAFCEANGDVNKAEELLTA 82 (511)
Q Consensus 44 ~k~l~~LleaFgs~Sl~~ia~Ay~~A~~d~~~A~eiL~~ 82 (511)
...|..|++ .| |+-+.+..|+...+ |++.|.+.|.+
T Consensus 10 ~~~v~~L~~-MG-F~~~~a~~AL~~~~-n~e~A~~~L~~ 45 (47)
T 2ekk_A 10 QQQLQQLMD-MG-FTREHAMEALLNTS-TMEQATEYLLT 45 (47)
T ss_dssp HHHHHHHHH-HH-CCHHHHHHHHHHSC-SHHHHHHHHHT
T ss_pred HHHHHHHHH-cC-CCHHHHHHHHHHcC-CHHHHHHHHHc
Confidence 356888887 55 88999999999995 99999999973
No 48
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=74.63 E-value=3.7 Score=30.21 Aligned_cols=32 Identities=31% Similarity=0.399 Sum_probs=26.5
Q ss_pred HHHhhccccccchHHHHHHHhhcCCcHHHHHHHHHc
Q 043016 185 LYSMLGDECQFSMAVVRDVLCQCGYNVEKAMDVLLD 220 (511)
Q Consensus 185 L~sMLGdgfqL~~~vIrdVL~~cGyDv~ks~d~LLd 220 (511)
|..| || -+...++.+|..|+.||++|+|.|+.
T Consensus 14 L~~M---GF-~d~~~~~~AL~~~~gnv~~Ave~L~~ 45 (46)
T 2bwb_A 14 LNDM---GF-FDFDRNVAALRRSGGSVQGALDSLLN 45 (46)
T ss_dssp HHHT---TC-CCHHHHHHHHHHHTTCHHHHHHHHHC
T ss_pred HHHc---CC-CcHHHHHHHHHHhCCCHHHHHHHHHc
Confidence 4455 56 46778899999999999999999985
No 49
>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A
Probab=74.15 E-value=2.1 Score=31.64 Aligned_cols=27 Identities=26% Similarity=0.373 Sum_probs=24.6
Q ss_pred ccchHHHHHHHhhcCCcHHHHHHHHHc
Q 043016 194 QFSMAVVRDVLCQCGYNVEKAMDVLLD 220 (511)
Q Consensus 194 qL~~~vIrdVL~~cGyDv~ks~d~LLd 220 (511)
..+...++++|-.||.|++.|++-|+.
T Consensus 15 GF~~~~a~~Al~a~~~n~e~A~~~Lf~ 41 (47)
T 1dv0_A 15 GFPESLVIQAYFACEKNENLAANFLLS 41 (47)
T ss_dssp TCCHHHHHHHHTTTTSCHHHHHHHTTS
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 478899999999999999999999974
No 50
>1q02_A Sequestosome 1; helical bundle, protein binding; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 2jy7_A 2jy8_A 2k0b_X 2knv_A 2rru_A 3b0f_A
Probab=73.95 E-value=4.1 Score=31.18 Aligned_cols=41 Identities=17% Similarity=0.189 Sum_probs=37.6
Q ss_pred HHHHHHHHHHhhccccccchHHHHHHHhhcCCcHHHHHHHH
Q 043016 178 KEEMEQFLYSMLGDECQFSMAVVRDVLCQCGYNVEKAMDVL 218 (511)
Q Consensus 178 ~~d~E~FL~sMLGdgfqL~~~vIrdVL~~cGyDv~ks~d~L 218 (511)
...+++=|-.||.=||.=.=+-.-..|..++|||-++||.|
T Consensus 7 D~rl~~al~qMl~MGF~negGWLt~LL~~k~gDI~~aLD~l 47 (52)
T 1q02_A 7 DPRLIESLSQMLSMGFSDEGGWLTRLLQTKNYDIGAALDTI 47 (52)
T ss_dssp CHHHHHHHHHHHTTTCCCTTSHHHHHHHHTTTCHHHHHHHH
T ss_pred ChHHHHHHHHHHHcCCCccccHHHHHHHHccCCHHHHHHHh
Confidence 45588889999999999999999999999999999999987
No 51
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=73.30 E-value=4 Score=30.02 Aligned_cols=36 Identities=19% Similarity=0.356 Sum_probs=28.7
Q ss_pred HHHHHHHHhhCCCC-HHHHHHHHHHhcCChhHHHHHHHh
Q 043016 45 QIIHSLTEAFGSVS-LEEATSAFCEANGDVNKAEELLTA 82 (511)
Q Consensus 45 k~l~~LleaFgs~S-l~~ia~Ay~~A~~d~~~A~eiL~~ 82 (511)
..|..|++ +| |+ -+.+..|...++||++.|.|+|.+
T Consensus 9 ~~i~~L~~-MG-F~d~~~~~~AL~~~~gnv~~Ave~L~~ 45 (46)
T 2bwb_A 9 HQLRQLND-MG-FFDFDRNVAALRRSGGSVQGALDSLLN 45 (46)
T ss_dssp HHHHHHHH-TT-CCCHHHHHHHHHHHTTCHHHHHHHHHC
T ss_pred HHHHHHHH-cC-CCcHHHHHHHHHHhCCCHHHHHHHHHc
Confidence 45666665 56 64 566799999999999999999973
No 52
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=73.19 E-value=4.3 Score=32.64 Aligned_cols=42 Identities=29% Similarity=0.375 Sum_probs=32.2
Q ss_pred ccHHHHHHHHHHhhccccccchHHHHHHHhhcCCcHHHHHHHHHcccC
Q 043016 176 FDKEEMEQFLYSMLGDECQFSMAVVRDVLCQCGYNVEKAMDVLLDLSA 223 (511)
Q Consensus 176 ~~~~d~E~FL~sMLGdgfqL~~~vIrdVL~~cGyDv~ks~d~LLd~S~ 223 (511)
+..+.+ +=|..| || +...++..|..||.||+.|++.|++-..
T Consensus 28 ~~~~~v-~~L~~M---GF--~~~~a~~AL~~t~~nve~Ave~L~~~~~ 69 (73)
T 1wiv_A 28 IDQSSV-DTLLSF---GF--AEDVARKALKASGGDIEKATDWVFNNSG 69 (73)
T ss_dssp SCHHHH-HHHHHH---TC--CHHHHHHHHHHTTSCHHHHHHHHHHSCC
T ss_pred CCHHHH-HHHHHc---CC--CHHHHHHHHHHhCCCHHHHHHHHHhCCC
Confidence 344444 445666 45 7899999999999999999999997543
No 53
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=73.04 E-value=3.2 Score=31.58 Aligned_cols=40 Identities=28% Similarity=0.270 Sum_probs=30.6
Q ss_pred HHHHHhhccccccchHHHHHHHhhcCCcHHHHHHHHHcccCCCC
Q 043016 183 QFLYSMLGDECQFSMAVVRDVLCQCGYNVEKAMDVLLDLSAPSN 226 (511)
Q Consensus 183 ~FL~sMLGdgfqL~~~vIrdVL~~cGyDv~ks~d~LLd~S~~~~ 226 (511)
+-|..| ||. +...++.+|-.|+.||++|++.|+..-..++
T Consensus 14 ~~L~~M---GF~-d~~~n~~AL~~~~Gdv~~Ave~L~~~~~~~~ 53 (54)
T 2dah_A 14 EQLRSM---GFL-NREANLQALIATGGDVDAAVEKLRQSSGPSS 53 (54)
T ss_dssp HHHHHH---TCC-CHHHHHHHHHHHTSCHHHHHHHHHHHSCSSC
T ss_pred HHHHHc---CCC-cHHHHHHHHHHcCCCHHHHHHHHHhCCCcCC
Confidence 557777 452 4456789999999999999999997655443
No 54
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=72.21 E-value=7.5 Score=33.84 Aligned_cols=37 Identities=19% Similarity=0.374 Sum_probs=32.5
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHhcCChhHHHHHHHh
Q 043016 44 NQIIHSLTEAFGSVSLEEATSAFCEANGDVNKAEELLTA 82 (511)
Q Consensus 44 ~k~l~~LleaFgs~Sl~~ia~Ay~~A~~d~~~A~eiL~~ 82 (511)
...+..|++ +| |+-+++..|+...++|++.|.+.|..
T Consensus 79 e~~v~~L~~-MG-F~~~~a~~AL~~~~~~~e~A~e~L~~ 115 (126)
T 2lbc_A 79 EEIVAIITS-MG-FQRNQAIQALRATNNNLERALDWIFS 115 (126)
T ss_dssp HHHHHHHHH-HT-SCHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred HHHHHHHHH-cC-CCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 467888887 55 89999999999999999999999984
No 55
>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A
Probab=72.14 E-value=1.7 Score=32.15 Aligned_cols=37 Identities=19% Similarity=0.251 Sum_probs=29.9
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHhcCChhHHHHHHHh
Q 043016 44 NQIIHSLTEAFGSVSLEEATSAFCEANGDVNKAEELLTA 82 (511)
Q Consensus 44 ~k~l~~LleaFgs~Sl~~ia~Ay~~A~~d~~~A~eiL~~ 82 (511)
+.+++.|. ++ .|+-..+..||...++|+++|++.|.+
T Consensus 5 ~eaI~rL~-~m-GF~~~~a~~Al~a~~~n~e~A~~~Lf~ 41 (47)
T 1dv0_A 5 KEAIERLK-AL-GFPESLVIQAYFACEKNENLAANFLLS 41 (47)
T ss_dssp HHHHTTTT-TT-TCCHHHHHHHHTTTTSCHHHHHHHTTS
T ss_pred HHHHHHHH-Hc-CCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 34555554 34 499999999999999999999999984
No 56
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=71.99 E-value=8.1 Score=28.94 Aligned_cols=36 Identities=31% Similarity=0.421 Sum_probs=30.4
Q ss_pred HHHHHHHHhhCCC-CHHHHHHHHHHhcCChhHHHHHHHh
Q 043016 45 QIIHSLTEAFGSV-SLEEATSAFCEANGDVNKAEELLTA 82 (511)
Q Consensus 45 k~l~~LleaFgs~-Sl~~ia~Ay~~A~~d~~~A~eiL~~ 82 (511)
..|..|++ +| | +-+.+..|+..++||++.|.|.|..
T Consensus 14 ~~l~~L~~-MG-F~~~~~~~~AL~~t~gn~e~A~e~L~~ 50 (52)
T 2jy5_A 14 QQLEQLSA-MG-FLNREANLQALIATGGDINAAIERLLG 50 (52)
T ss_dssp HHHHHHHH-TT-CCCHHHHHHHHHHHTTCHHHHHHHHTT
T ss_pred HHHHHHHH-cC-CCCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 56766665 56 6 8888999999999999999999973
No 57
>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2
Probab=71.92 E-value=5.8 Score=31.49 Aligned_cols=38 Identities=24% Similarity=0.333 Sum_probs=34.0
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHhcCChhHHHHHHHhh
Q 043016 45 QIIHSLTEAFGSVSLEEATSAFCEANGDVNKAEELLTAL 83 (511)
Q Consensus 45 k~l~~LleaFgs~Sl~~ia~Ay~~A~~d~~~A~eiL~~~ 83 (511)
.++..|.+..| +++.|.-.|..+++||+++|-++|..-
T Consensus 11 ~~Vk~LRe~TG-ag~~dcKkAL~e~~GDi~~Ai~~Lr~k 48 (64)
T 2cp9_A 11 ELLMKLRRKTG-YSFVNCKKALETCGGDLKQAEIWLHKE 48 (64)
T ss_dssp HHHHHHHHHHC-CCHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 56788888877 699999999999999999999999864
No 58
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=71.67 E-value=5.2 Score=32.02 Aligned_cols=37 Identities=27% Similarity=0.346 Sum_probs=29.8
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHhcCChhHHHHHHHh
Q 043016 45 QIIHSLTEAFGSVSLEEATSAFCEANGDVNKAEELLTA 82 (511)
Q Consensus 45 k~l~~LleaFgs~Sl~~ia~Ay~~A~~d~~~A~eiL~~ 82 (511)
..|..|. .+|=+--+.+..|...++||++.|.|+|..
T Consensus 21 ~ql~qL~-~MGF~d~~an~~AL~at~Gnve~Ave~L~~ 57 (67)
T 2dna_A 21 KEMECLQ-AMGFVNYNANLQALIATDGDTNAAIYKLKS 57 (67)
T ss_dssp HHHHHHH-HHTCCCHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHH-HcCCCcHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 5666655 577445666699999999999999999996
No 59
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=70.98 E-value=11 Score=30.96 Aligned_cols=38 Identities=29% Similarity=0.280 Sum_probs=33.5
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHhcCChhHHHHHHHhh
Q 043016 44 NQIIHSLTEAFGSVSLEEATSAFCEANGDVNKAEELLTAL 83 (511)
Q Consensus 44 ~k~l~~LleaFgs~Sl~~ia~Ay~~A~~d~~~A~eiL~~~ 83 (511)
...|..|++ +| |+-+.+..|+...++|++.|.+.|.+-
T Consensus 30 e~~i~~L~~-MG-F~~~~a~~AL~~t~~nve~A~ewL~~~ 67 (83)
T 2dai_A 30 EAALRQLTE-MG-FPENRATKALQLNHMSVPQAMEWLIEH 67 (83)
T ss_dssp HHHHHHHHH-HT-CCHHHHHHHHHHTTSCHHHHHHHHHHG
T ss_pred HHHHHHHHH-cC-CCHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence 467888887 55 999999999999999999999999963
No 60
>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2
Probab=70.46 E-value=2.8 Score=33.28 Aligned_cols=35 Identities=20% Similarity=0.243 Sum_probs=28.5
Q ss_pred HhhccccccchHHHHHHHhhcCCcHHHHHHHHHcc
Q 043016 187 SMLGDECQFSMAVVRDVLCQCGYNVEKAMDVLLDL 221 (511)
Q Consensus 187 sMLGdgfqL~~~vIrdVL~~cGyDv~ks~d~LLd~ 221 (511)
+.|=+-...+|.-.+..|-.|+.||++|++.|-.-
T Consensus 14 k~LRe~TGag~~dcKkAL~e~~GDi~~Ai~~Lr~k 48 (64)
T 2cp9_A 14 MKLRRKTGYSFVNCKKALETCGGDLKQAEIWLHKE 48 (64)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 34455566789999999999999999999998543
No 61
>1jdq_A TM006 protein, hypothetical protein TM0983; structural genomics; NMR {Thermotoga maritima} SCOP: d.68.3.3
Probab=69.19 E-value=13 Score=31.21 Aligned_cols=67 Identities=21% Similarity=0.109 Sum_probs=51.0
Q ss_pred ceeecCCCChHHHHHHHHHHHHHHHhcCCCceEEEEEccCCCCCCCcchHHHHHHHHHhCCCceee--CC-CcEEEEEec
Q 043016 432 ITIDLHGQHVKPAMKLLKLHLVMVSYAQSVQTLRVITGCGSHGVGKSKLKQSVIELVENEGLHWSE--EN-RGTVLIKLD 508 (511)
Q Consensus 432 ~~IDLHGL~V~EAl~~Lk~~L~~~~~~~s~~~L~VITG~G~HS~G~akLKpAV~~~Lek~gi~~~e--~n-~G~IlV~L~ 508 (511)
.+||+-|+....-+-.++..|..+. ....|.|++-... -..-|..|+++.|+.+.. .. +|.+.|.|.
T Consensus 27 ~~LD~rGl~CP~Pvl~tkkaL~~l~---~Ge~L~Vl~dd~~-------a~~dI~~~~~~~G~~v~~~e~~~~g~~~i~I~ 96 (98)
T 1jdq_A 27 KTLDVRGEVCPVPDVETKRALQNMK---PGEILEVWIDYPM-------SKERIPETVKKLGHEVLEIEEVGPSEWKIYIK 96 (98)
T ss_dssp EEEECSSCCSSHHHHHHHHHHHTCC---TTCEEEEEESSCT-------HHHHHHHHHHHSSCCEEEEEECSSSCEEEEEE
T ss_pred EEEeCCCCCCCHHHHHHHHHHHhCC---CCCEEEEEECCcc-------HHHHHHHHHHHCCCEEEEEEEecCCEEEEEEE
Confidence 4699999999999999999988763 3456888876542 355699999999999863 23 576666664
No 62
>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens}
Probab=68.47 E-value=5.2 Score=29.90 Aligned_cols=28 Identities=18% Similarity=0.338 Sum_probs=26.2
Q ss_pred CCCHHHHHHHHHHhcCChhHHHHHHHhh
Q 043016 56 SVSLEEATSAFCEANGDVNKAEELLTAL 83 (511)
Q Consensus 56 s~Sl~~ia~Ay~~A~~d~~~A~eiL~~~ 83 (511)
.||-+++-.|.-.|+-|++.|+.||.+.
T Consensus 15 Gf~~~~~~rAL~ia~Nnie~A~nIL~ef 42 (46)
T 2oo9_A 15 GYSYQDIQKALVIAQNNIEMAKNILREF 42 (46)
T ss_dssp TBCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhhccHHHHHHHHHHh
Confidence 5899999999999999999999999864
No 63
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=68.37 E-value=6.8 Score=30.61 Aligned_cols=37 Identities=24% Similarity=0.301 Sum_probs=31.8
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHh-cCChhHHHHHHHhh
Q 043016 45 QIIHSLTEAFGSVSLEEATSAFCEA-NGDVNKAEELLTAL 83 (511)
Q Consensus 45 k~l~~LleaFgs~Sl~~ia~Ay~~A-~~d~~~A~eiL~~~ 83 (511)
..|..|++ .| |+-+.+..|+... ++|++.|.+.|.+=
T Consensus 11 ~~v~~L~~-MG-F~~~~a~~AL~~t~~~nve~A~ewLl~~ 48 (64)
T 1whc_A 11 TALESLIE-MG-FPRGRAEKALALTGNQGIEAAMDWLMEH 48 (64)
T ss_dssp CHHHHHHT-TT-CCHHHHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred HHHHHHHH-cC-CCHHHHHHHHHHhcCCCHHHHHHHHHhC
Confidence 46777886 54 9999999999999 69999999999863
No 64
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=67.19 E-value=3.9 Score=29.83 Aligned_cols=39 Identities=23% Similarity=0.439 Sum_probs=29.5
Q ss_pred CccHHHHHHHHHHhhccccccchHHHHHHHhhcCCcHHHHHHHHHc
Q 043016 175 GFDKEEMEQFLYSMLGDECQFSMAVVRDVLCQCGYNVEKAMDVLLD 220 (511)
Q Consensus 175 ~~~~~d~E~FL~sMLGdgfqL~~~vIrdVL~~cGyDv~ks~d~LLd 220 (511)
.+..+.++ =|..| | ++...++..|-.|| |++.|++.||+
T Consensus 7 ~~~~~~v~-~L~~M---G--F~~~~a~~AL~~~~-n~e~A~~~L~~ 45 (47)
T 2ekk_A 7 GVNQQQLQ-QLMDM---G--FTREHAMEALLNTS-TMEQATEYLLT 45 (47)
T ss_dssp SSCHHHHH-HHHHH---H--CCHHHHHHHHHHSC-SHHHHHHHHHT
T ss_pred CCCHHHHH-HHHHc---C--CCHHHHHHHHHHcC-CHHHHHHHHHc
Confidence 44555554 35556 3 56788899999998 99999999985
No 65
>3hz7_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Desulfitobacterium hafniense}
Probab=63.26 E-value=14 Score=30.38 Aligned_cols=67 Identities=18% Similarity=0.188 Sum_probs=51.2
Q ss_pred eeecCCCChHHHHHHHHHHHHHHHhcCCCceEEEEEccCCCCCCCcchHHHHHHHHHhCCCceee--CCCcEEEEEec
Q 043016 433 TIDLHGQHVKPAMKLLKLHLVMVSYAQSVQTLRVITGCGSHGVGKSKLKQSVIELVENEGLHWSE--ENRGTVLIKLD 508 (511)
Q Consensus 433 ~IDLHGL~V~EAl~~Lk~~L~~~~~~~s~~~L~VITG~G~HS~G~akLKpAV~~~Lek~gi~~~e--~n~G~IlV~L~ 508 (511)
+||+-|+.-..-+-.++..|..+.. ....|.|++-.. .-..-|..|+++.|+.+.. ..+|.+.|.|.
T Consensus 3 ~lD~rGl~CP~Pvl~~kkal~~l~~--~G~~L~V~~dd~-------~a~~dI~~~~~~~G~~v~~~~~~~g~~~i~I~ 71 (87)
T 3hz7_A 3 TIDALGQVCPIPVIRAKKALAELGE--AGGVVTVLVDND-------ISRQNLQKMAEGMGYQSEYLEKDNGVIEVTIV 71 (87)
T ss_dssp EEECTTCCTTHHHHHHHHHHHTTGG--GCCEEEEEESSH-------HHHHHHHHHHHHHTCEEEEEECGGGCEEEEEE
T ss_pred EEEcCCCCCCHHHHHHHHHHHhccC--CCCEEEEEECCc-------cHHHHHHHHHHHCCCEEEEEEecCCEEEEEEE
Confidence 6999999999999999999987631 135788887543 2445699999999999863 46777777664
No 66
>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens}
Probab=62.68 E-value=6.7 Score=30.38 Aligned_cols=38 Identities=18% Similarity=0.304 Sum_probs=31.8
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHhcCChhHHHHHHHhhcC
Q 043016 46 IIHSLTEAFGSVSLEEATSAFCEANGDVNKAEELLTALTE 85 (511)
Q Consensus 46 ~l~~LleaFgs~Sl~~ia~Ay~~A~~d~~~A~eiL~~~~~ 85 (511)
.+..|++- .||-+++-.|...|+-|+|.|..||.++--
T Consensus 10 ~Ia~L~sm--Gfsr~da~~AL~ia~Ndv~~AtNiLlEf~~ 47 (56)
T 2juj_A 10 EIENLMSQ--GYSYQDIQKALVIAQNNIEMAKNILREFVS 47 (56)
T ss_dssp HHHHHHTT--TCCHHHHHHHHHHTTTCSHHHHHHHHHSCC
T ss_pred HHHHHHHc--CCCHHHHHHHHHHhcccHHHHHHHHHHHHc
Confidence 45566642 589999999999999999999999998643
No 67
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=62.17 E-value=5.1 Score=35.10 Aligned_cols=37 Identities=16% Similarity=0.313 Sum_probs=30.2
Q ss_pred HHhhccccccchHHHHHHHhhcCCcHHHHHHHHHcccC
Q 043016 186 YSMLGDECQFSMAVVRDVLCQCGYNVEKAMDVLLDLSA 223 (511)
Q Consensus 186 ~sMLGdgfqL~~~vIrdVL~~cGyDv~ks~d~LLd~S~ 223 (511)
.++|.| ..++...|+++|-.|+-|+++|+|-|+..++
T Consensus 80 v~~L~e-MGF~~~~a~~AL~~~~nd~erAlewL~~~~~ 116 (118)
T 4ae4_A 80 MSKFKE-MGFELKDIKEVLLLHNNDQDNALEDLMARAG 116 (118)
T ss_dssp HHHHHH-TTCCHHHHHHHHHHTTTCHHHHHHHHHHHC-
T ss_pred HHHHHH-cCCCHHHHHHHHHHcCCCHHHHHHHHHHhcc
Confidence 555543 5578889999999999999999999997654
No 68
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=61.30 E-value=9 Score=33.27 Aligned_cols=39 Identities=10% Similarity=0.091 Sum_probs=30.7
Q ss_pred HHHHHHhhccccccchHHHHHHHhhcCCcHHHHHHHHHcc
Q 043016 182 EQFLYSMLGDECQFSMAVVRDVLCQCGYNVEKAMDVLLDL 221 (511)
Q Consensus 182 E~FL~sMLGdgfqL~~~vIrdVL~~cGyDv~ks~d~LLd~ 221 (511)
++=|-+|.-=|| -+...++.+|-.|+.||++|+|.||..
T Consensus 67 ~~qL~qL~eMGF-~d~~~ni~AL~~t~Gdve~AVe~L~~~ 105 (108)
T 2cwb_A 67 QPQLQQLRDMGI-QDDELSLRALQATGGDIQAALELIFAG 105 (108)
T ss_dssp HHHHHHHHTTTC-CCHHHHHHHHHHHTSCHHHHHHHHHHT
T ss_pred HHHHHHHHHcCC-CCHHHHHHHHHHhCCCHHHHHHHHHhc
Confidence 444555555466 467789999999999999999999974
No 69
>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens}
Probab=60.44 E-value=17 Score=28.10 Aligned_cols=45 Identities=16% Similarity=0.240 Sum_probs=35.4
Q ss_pred HHHHHHHhhccccccchHHHHHHHhhcCCcHHHHHHHHHcccCCCCC
Q 043016 181 MEQFLYSMLGDECQFSMAVVRDVLCQCGYNVEKAMDVLLDLSAPSNE 227 (511)
Q Consensus 181 ~E~FL~sMLGdgfqL~~~vIrdVL~~cGyDv~ks~d~LLd~S~~~~~ 227 (511)
.|+-+-.....|| |+.-|++.|..+..||+.|-+.||.|....+.
T Consensus 7 ~e~~Ia~L~smGf--sr~da~~AL~ia~Ndv~~AtNiLlEf~~~~~~ 51 (56)
T 2juj_A 7 LSSEIENLMSQGY--SYQDIQKALVIAQNNIEMAKNILREFVSISSP 51 (56)
T ss_dssp HHHHHHHHHTTTC--CHHHHHHHHHHTTTCSHHHHHHHHHSCCCCCS
T ss_pred ChHHHHHHHHcCC--CHHHHHHHHHHhcccHHHHHHHHHHHHccCCc
Confidence 3444444555565 78899999999999999999999999877653
No 70
>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens}
Probab=60.22 E-value=14 Score=27.58 Aligned_cols=40 Identities=18% Similarity=0.275 Sum_probs=31.3
Q ss_pred HHHHHHhhccccccchHHHHHHHhhcCCcHHHHHHHHHcccC
Q 043016 182 EQFLYSMLGDECQFSMAVVRDVLCQCGYNVEKAMDVLLDLSA 223 (511)
Q Consensus 182 E~FL~sMLGdgfqL~~~vIrdVL~~cGyDv~ks~d~LLd~S~ 223 (511)
|.-+-.....|| |..-|++.|..+..||+.|-+.|+.+..
T Consensus 5 e~~I~~L~s~Gf--~~~~~~rAL~ia~Nnie~A~nIL~ef~~ 44 (46)
T 2oo9_A 5 SSEIENLMSQGY--SYQDIQKALVIAQNNIEMAKNILREFAA 44 (46)
T ss_dssp HHHHHHHHHTTB--CHHHHHHHHHHTTTCHHHHHHHHHHHCC
T ss_pred HHHHHHHHHcCC--CHHHHHHHHHHhhccHHHHHHHHHHhcc
Confidence 333444445555 7888999999999999999999998864
No 71
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=59.01 E-value=9.8 Score=30.41 Aligned_cols=41 Identities=7% Similarity=-0.040 Sum_probs=31.3
Q ss_pred HHHHHHhhccccccchHHHHHHHhhcCCcHHHHHHHHHcccC
Q 043016 182 EQFLYSMLGDECQFSMAVVRDVLCQCGYNVEKAMDVLLDLSA 223 (511)
Q Consensus 182 E~FL~sMLGdgfqL~~~vIrdVL~~cGyDv~ks~d~LLd~S~ 223 (511)
++-|-.|.-=|| .+..-+...|-.|+.||++|+|.||..-.
T Consensus 20 ~~ql~qL~~MGF-~d~~an~~AL~at~Gnve~Ave~L~~~~~ 60 (67)
T 2dna_A 20 SKEMECLQAMGF-VNYNANLQALIATDGDTNAAIYKLKSSQG 60 (67)
T ss_dssp HHHHHHHHHHTC-CCHHHHHHHHHHTTSCHHHHHHHHHHCCS
T ss_pred HHHHHHHHHcCC-CcHHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence 444444544467 67778889999999999999999997543
No 72
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=59.01 E-value=9.3 Score=31.68 Aligned_cols=28 Identities=25% Similarity=0.392 Sum_probs=25.3
Q ss_pred cchHHHHHHHhhcCCcHHHHHHHHHccc
Q 043016 195 FSMAVVRDVLCQCGYNVEKAMDVLLDLS 222 (511)
Q Consensus 195 L~~~vIrdVL~~cGyDv~ks~d~LLd~S 222 (511)
++...++..|-.|+.|++.|++.|++-.
T Consensus 33 F~~~~a~~AL~~~n~n~e~A~ewL~~h~ 60 (85)
T 2dkl_A 33 FPREPAEEALKSNNMNLDQAMSALLEKK 60 (85)
T ss_dssp CCHHHHHHHHHHTTSCHHHHHHHHHTTS
T ss_pred CCHHHHHHHHHHcCCCHHHHHHHHHHCc
Confidence 4889999999999999999999999754
No 73
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=57.22 E-value=15 Score=30.21 Aligned_cols=38 Identities=21% Similarity=0.268 Sum_probs=32.6
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHhc-CChhHHHHHHHhh
Q 043016 44 NQIIHSLTEAFGSVSLEEATSAFCEAN-GDVNKAEELLTAL 83 (511)
Q Consensus 44 ~k~l~~LleaFgs~Sl~~ia~Ay~~A~-~d~~~A~eiL~~~ 83 (511)
...|..|++ +| |+-+.+..|+..++ +|++.|.+.|.+-
T Consensus 30 e~~v~~L~~-MG-F~~~~a~~AL~~t~n~n~e~A~ewL~~h 68 (84)
T 1vek_A 30 EEIVAQLVS-MG-FSQLHCQKAAINTSNAGVEEAMNWLLSH 68 (84)
T ss_dssp HHHHHHHHH-HT-CCHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHH-cC-CCHHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 467888887 55 99999999999995 7999999999963
No 74
>2qsf_X RAD23, UV excision repair protein RAD23; alpha-beta structure, beta hairpin, transglutaminase fold, DNA-damage recognition, DNA repair; HET: DNA; 2.35A {Saccharomyces cerevisiae} PDB: 2qsg_X* 2qsh_X* 1x3z_B* 1x3w_B* 3esw_B*
Probab=56.86 E-value=11 Score=35.23 Aligned_cols=40 Identities=18% Similarity=0.307 Sum_probs=34.0
Q ss_pred chhHHHHHHHHHhhCCCCHHHHHHHHHHhcCChhHHHHHHHh
Q 043016 41 DTKNQIIHSLTEAFGSVSLEEATSAFCEANGDVNKAEELLTA 82 (511)
Q Consensus 41 ~~~~k~l~~LleaFgs~Sl~~ia~Ay~~A~~d~~~A~eiL~~ 82 (511)
.+|+.+++.|.+ +| |+-+.+..||...++|.++|+.+|.+
T Consensus 128 pee~eaI~rL~~-mG-F~r~~viqA~~ac~knee~Aan~L~~ 167 (171)
T 2qsf_X 128 PEDDQAISRLCE-LG-FERDLVIQVYFACDKNEEAAANILFS 167 (171)
T ss_dssp HHHHHHHHHHHT-TT-CCHHHHHHHHHHTTTCHHHHHHHHTT
T ss_pred ccHHHHHHHHHH-cC-CCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 455677877764 45 99999999999999999999999985
No 75
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=56.57 E-value=8.1 Score=30.21 Aligned_cols=35 Identities=34% Similarity=0.404 Sum_probs=28.7
Q ss_pred HHHHHhhccccccchHHHHHHHhhcCC-cHHHHHHHHHccc
Q 043016 183 QFLYSMLGDECQFSMAVVRDVLCQCGY-NVEKAMDVLLDLS 222 (511)
Q Consensus 183 ~FL~sMLGdgfqL~~~vIrdVL~~cGy-Dv~ks~d~LLd~S 222 (511)
+=|..| | ++...++..|-.||. ||+.|++-||+-.
T Consensus 24 ~~L~~M---G--F~~~~a~~AL~~t~~~nve~A~ewL~~~~ 59 (64)
T 2cpw_A 24 DVLLSM---G--FPRARAQKALASTGGRSVQTACDWLFSHS 59 (64)
T ss_dssp HHHHHH---T--CCHHHHHHHHHHTTTSCHHHHHHHHHSCC
T ss_pred HHHHHc---C--CCHHHHHHHHHHcCCCCHHHHHHHHHhCC
Confidence 446666 4 477999999999998 9999999999643
No 76
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=54.10 E-value=22 Score=27.74 Aligned_cols=37 Identities=16% Similarity=0.261 Sum_probs=32.1
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHhcC-ChhHHHHHHHhh
Q 043016 45 QIIHSLTEAFGSVSLEEATSAFCEANG-DVNKAEELLTAL 83 (511)
Q Consensus 45 k~l~~LleaFgs~Sl~~ia~Ay~~A~~-d~~~A~eiL~~~ 83 (511)
.+|..|++ .| |+-+.+..|+...++ |++.|.+.|.+-
T Consensus 11 ~~v~~L~~-MG-F~~~~a~~AL~~t~n~~~e~A~~wL~~h 48 (64)
T 2crn_A 11 SLLEPLLA-MG-FPVHTALKALAATGRKTAEEALAWLHDH 48 (64)
T ss_dssp SSHHHHHH-TS-CCHHHHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred HHHHHHHH-cC-CCHHHHHHHHHHhCCCCHHHHHHHHHhC
Confidence 36788888 65 999999999999977 999999999864
No 77
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=50.16 E-value=16 Score=28.10 Aligned_cols=40 Identities=23% Similarity=0.374 Sum_probs=32.3
Q ss_pred HHHhhccccccchHHHHHHHhhcCCcHHHHHHHHHcccCCCC
Q 043016 185 LYSMLGDECQFSMAVVRDVLCQCGYNVEKAMDVLLDLSAPSN 226 (511)
Q Consensus 185 L~sMLGdgfqL~~~vIrdVL~~cGyDv~ks~d~LLd~S~~~~ 226 (511)
+-+..+.|| ++.-|.+.|.++..||+.|-+-||.+....+
T Consensus 13 I~~L~~lGF--~r~~ai~AL~~a~nnve~Aa~iL~ef~~~~~ 52 (53)
T 2d9s_A 13 IERLMSQGY--SYQDIQKALVIAHNNIEMAKNILREFSGPSS 52 (53)
T ss_dssp HHHHHHHTC--CHHHHHHHHHHTTTCHHHHHHHHHHHTSCSC
T ss_pred HHHHHHcCC--CHHHHHHHHHHhcCCHHHHHHHHHHhcccCC
Confidence 444444454 7889999999999999999999999977653
No 78
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=50.13 E-value=12 Score=29.14 Aligned_cols=29 Identities=28% Similarity=0.410 Sum_probs=25.1
Q ss_pred cchHHHHHHHhhcC-CcHHHHHHHHHcccC
Q 043016 195 FSMAVVRDVLCQCG-YNVEKAMDVLLDLSA 223 (511)
Q Consensus 195 L~~~vIrdVL~~cG-yDv~ks~d~LLd~S~ 223 (511)
++...++..|-.|| .|++.|++.||+-..
T Consensus 21 F~~~~a~~AL~~t~~~nve~A~ewLl~~~~ 50 (64)
T 1whc_A 21 FPRGRAEKALALTGNQGIEAAMDWLMEHED 50 (64)
T ss_dssp CCHHHHHHHHHHHTSCCHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHhcCCCHHHHHHHHHhCCC
Confidence 56789999999995 999999999997544
No 79
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=48.93 E-value=27 Score=28.82 Aligned_cols=37 Identities=27% Similarity=0.388 Sum_probs=32.0
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHhcCChhHHHHHHHh
Q 043016 44 NQIIHSLTEAFGSVSLEEATSAFCEANGDVNKAEELLTA 82 (511)
Q Consensus 44 ~k~l~~LleaFgs~Sl~~ia~Ay~~A~~d~~~A~eiL~~ 82 (511)
...|..|++ +| |+-+.+..|+...++|++.|.+.|.+
T Consensus 22 ~~~I~qL~~-MG-F~~~~a~~AL~~~n~n~e~A~ewL~~ 58 (85)
T 2dkl_A 22 SRLIKQLTD-MG-FPREPAEEALKSNNMNLDQAMSALLE 58 (85)
T ss_dssp HHHHHHHHH-HT-CCHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred HHHHHHHHH-cC-CCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 466777777 44 89999999999999999999999995
No 80
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=48.31 E-value=21 Score=28.31 Aligned_cols=34 Identities=29% Similarity=0.428 Sum_probs=28.3
Q ss_pred ccccchHHHHHHHhhcCCcHHHHHHHHHcccCCC
Q 043016 192 ECQFSMAVVRDVLCQCGYNVEKAMDVLLDLSAPS 225 (511)
Q Consensus 192 gfqL~~~vIrdVL~~cGyDv~ks~d~LLd~S~~~ 225 (511)
++.++....+-.|..||-||++|+|-|..-.+.+
T Consensus 28 sMGFs~~qA~kALKat~~NvErAaDWLFSH~D~~ 61 (63)
T 1wgn_A 28 NMGYSYECVLRAMKKKGENIEQILDYLFAHSGPS 61 (63)
T ss_dssp HHHCCHHHHHHHHHHHCSCHHHHHHHHHHHSCCC
T ss_pred HcCCCHHHHHHHHHHcCCCHHHHHHHHHhCCCCC
Confidence 3457888889999999999999999998765544
No 81
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A
Probab=48.28 E-value=12 Score=35.10 Aligned_cols=39 Identities=23% Similarity=0.295 Sum_probs=29.6
Q ss_pred HHHHHHHHhhccccccchHHHHHHHhhcCCcHHHHHHHHHc
Q 043016 180 EMEQFLYSMLGDECQFSMAVVRDVLCQCGYNVEKAMDVLLD 220 (511)
Q Consensus 180 d~E~FL~sMLGdgfqL~~~vIrdVL~~cGyDv~ks~d~LLd 220 (511)
+.|+-+..+..-| ++.+-++.+|-.|++|++.|++.||+
T Consensus 162 ~~eekV~~l~~MG--f~~~~a~~AL~~~~wd~~~A~e~L~~ 200 (201)
T 3k9o_A 162 EYTKKIENLCAMG--FDRNAVIVALSSKSWDVETATELLLS 200 (201)
T ss_dssp HHHHHHHHHHTTT--CCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHcC--CCHHHHHHHHHHcCCCHHHHHHHHhc
Confidence 4455555554434 56778888999999999999999986
No 82
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=47.74 E-value=15 Score=31.85 Aligned_cols=36 Identities=17% Similarity=0.178 Sum_probs=29.3
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHhcC-ChhHHHHHHHh
Q 043016 45 QIIHSLTEAFGSVSLEEATSAFCEANG-DVNKAEELLTA 82 (511)
Q Consensus 45 k~l~~LleaFgs~Sl~~ia~Ay~~A~~-d~~~A~eiL~~ 82 (511)
..|..|++ . +|+...+..|...-++ |++.|.+.|..
T Consensus 5 ~~l~~L~~-M-GF~~~~a~~AL~~t~n~~~e~A~~wL~~ 41 (126)
T 2lbc_A 5 SSVMQLAE-M-GFPLEACRKAVYFTGNMGAEVAFNWIIV 41 (126)
T ss_dssp HHHHHHHT-T-SSCCHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred HHHHHHHH-c-CCCHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 46777776 3 5888999999988854 99999999986
No 83
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=46.62 E-value=13 Score=30.54 Aligned_cols=43 Identities=21% Similarity=0.253 Sum_probs=32.5
Q ss_pred CccHHHHHHHHHHhhccccccchHHHHHHHhhcCCcHHHHHHHHHcccC
Q 043016 175 GFDKEEMEQFLYSMLGDECQFSMAVVRDVLCQCGYNVEKAMDVLLDLSA 223 (511)
Q Consensus 175 ~~~~~d~E~FL~sMLGdgfqL~~~vIrdVL~~cGyDv~ks~d~LLd~S~ 223 (511)
.++.+.++ =|..| | ++...++..|-.|+.|++.|++.||.-..
T Consensus 27 ~~~e~~i~-~L~~M---G--F~~~~a~~AL~~t~~nve~A~ewL~~~~~ 69 (83)
T 2dai_A 27 RVDEAALR-QLTEM---G--FPENRATKALQLNHMSVPQAMEWLIEHAE 69 (83)
T ss_dssp SCCHHHHH-HHHHH---T--CCHHHHHHHHHHTTSCHHHHHHHHHHGGG
T ss_pred CCCHHHHH-HHHHc---C--CCHHHHHHHHHHhCCCHHHHHHHHHHCCC
Confidence 34555554 45566 3 56788999999999999999999997543
No 84
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=45.95 E-value=18 Score=28.99 Aligned_cols=36 Identities=22% Similarity=0.251 Sum_probs=29.1
Q ss_pred HHHHHhhccccccchHHHHHHHhhcCC-cHHHHHHHHHcccC
Q 043016 183 QFLYSMLGDECQFSMAVVRDVLCQCGY-NVEKAMDVLLDLSA 223 (511)
Q Consensus 183 ~FL~sMLGdgfqL~~~vIrdVL~~cGy-Dv~ks~d~LLd~S~ 223 (511)
+=|..| || +...++..|-.||. |++.|++.||.-..
T Consensus 14 ~~L~~M---GF--~~~~a~~AL~~t~n~~ve~A~ewL~~~~~ 50 (74)
T 2dag_A 14 IQLVEM---GF--PMDACRKAVYYTGNSGAEAAMNWVMSHMD 50 (74)
T ss_dssp HHHHHH---SC--CHHHHHHHHHHHTSCCHHHHHHHHHHHTT
T ss_pred HHHHHc---CC--CHHHHHHHHHHhCCCCHHHHHHHHHhCCC
Confidence 445566 44 68999999999996 89999999998544
No 85
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Probab=45.77 E-value=12 Score=36.67 Aligned_cols=39 Identities=23% Similarity=0.317 Sum_probs=28.7
Q ss_pred HHHHHHHHhhccccccchHHHHHHHhhcCCcHHHHHHHHHc
Q 043016 180 EMEQFLYSMLGDECQFSMAVVRDVLCQCGYNVEKAMDVLLD 220 (511)
Q Consensus 180 d~E~FL~sMLGdgfqL~~~vIrdVL~~cGyDv~ks~d~LLd 220 (511)
+.++.+..+--- .++.+-++.+|..|++|++.|++.||+
T Consensus 214 ~~~~~v~~l~~m--gf~~~~~~~al~~~nWd~~~A~e~L~~ 252 (253)
T 3e46_A 214 EYTKKIENLCAA--GFDRNAVIVALSSKSWDVETATELLLS 252 (253)
T ss_dssp HHHHHHHHHHHT--TCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHc--CCCHHHHHHHHHHcCCCHHHHHHHHhc
Confidence 334444444322 456778888999999999999999996
No 86
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=44.87 E-value=24 Score=30.59 Aligned_cols=38 Identities=26% Similarity=0.299 Sum_probs=30.2
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHhcCChhHHHHHHHhh
Q 043016 45 QIIHSLTEAFGSVSLEEATSAFCEANGDVNKAEELLTAL 83 (511)
Q Consensus 45 k~l~~LleaFgs~Sl~~ia~Ay~~A~~d~~~A~eiL~~~ 83 (511)
..|..|.| +|=..-+.+..|...++||++.|.|+|.+.
T Consensus 68 ~qL~qL~e-MGF~d~~~ni~AL~~t~Gdve~AVe~L~~~ 105 (108)
T 2cwb_A 68 PQLQQLRD-MGIQDDELSLRALQATGGDIQAALELIFAG 105 (108)
T ss_dssp HHHHHHHT-TTCCCHHHHHHHHHHHTSCHHHHHHHHHHT
T ss_pred HHHHHHHH-cCCCCHHHHHHHHHHhCCCHHHHHHHHHhc
Confidence 45655554 773356789999999999999999999963
No 87
>1pav_A Hypothetical protein TA1170/TA1414; structural genomics, structure, fast NMR, semiautomated analysis; NMR {Thermoplasma acidophilum} SCOP: d.68.3.3
Probab=42.76 E-value=6.8 Score=31.03 Aligned_cols=66 Identities=14% Similarity=0.118 Sum_probs=48.5
Q ss_pred ceeecCCCChHHHHHHHHHHHHHHHhcCCCceEEEEEccCCCCCCCcchHHHHHHHHHhCCCceee--CCCcEEEEEe
Q 043016 432 ITIDLHGQHVKPAMKLLKLHLVMVSYAQSVQTLRVITGCGSHGVGKSKLKQSVIELVENEGLHWSE--ENRGTVLIKL 507 (511)
Q Consensus 432 ~~IDLHGL~V~EAl~~Lk~~L~~~~~~~s~~~L~VITG~G~HS~G~akLKpAV~~~Lek~gi~~~e--~n~G~IlV~L 507 (511)
.+||+-|+.-..-+-.++..|..+. ....|.|++-... -..-|..|+++.|+.+.. ..+|.+.|.|
T Consensus 7 ~~lD~rGl~CP~Pvl~~k~al~~l~---~G~~L~V~~dd~~-------a~~di~~~~~~~G~~~~~~~~~~~~~~i~I 74 (78)
T 1pav_A 7 RVIDARGSYCPGPLMELIKAYKQAK---VGEVISVYSTDAG-------TKKDAPAWIQKSGQELVGVFDRNGYYEIVM 74 (78)
T ss_dssp CCCCBSSCSSCTTHHHHHHHHTTSC---TTCCEECCBSSSC-------HHHHHHHHHHHHTEEECCCCCCSSCBCCEE
T ss_pred EEEECCCCCCCHHHHHHHHHHHcCC---CCCEEEEEECCcc-------HHHHHHHHHHHCCCEEEEEEEeCCEEEEEE
Confidence 5799999999999988888887653 3346888765442 355699999999999853 3566554444
No 88
>2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=42.47 E-value=38 Score=26.05 Aligned_cols=42 Identities=31% Similarity=0.439 Sum_probs=33.2
Q ss_pred cHHHHHHHHHHhhccccccchHHHHHHHhhcCCcHHHHHHHHHcccC
Q 043016 177 DKEEMEQFLYSMLGDECQFSMAVVRDVLCQCGYNVEKAMDVLLDLSA 223 (511)
Q Consensus 177 ~~~d~E~FL~sMLGdgfqL~~~vIrdVL~~cGyDv~ks~d~LLd~S~ 223 (511)
+.+.+++|. .+-|- +..+-+..|..|++|++.|++...+--.
T Consensus 15 ~~e~i~qF~-~iTg~----~~~~A~~~Le~~~WnLe~Av~~ff~~~~ 56 (62)
T 2dal_A 15 LKGLIQQFT-TITGA----SESVGKHMLEACNNNLEMAVTMFLDGGG 56 (62)
T ss_dssp HHHHHHHHH-HHTCC----CHHHHHHHHHTTTSCHHHHHHHHHHSCC
T ss_pred HHHHHHHHH-HHhCC----CHHHHHHHHHHcCCCHHHHHHHHHcCCC
Confidence 455677776 56553 4899999999999999999999887543
No 89
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=39.56 E-value=18 Score=27.40 Aligned_cols=30 Identities=7% Similarity=0.274 Sum_probs=23.7
Q ss_pred chHHHHHHHhhcCCcHHHHHHHHHcccCCCC
Q 043016 196 SMAVVRDVLCQCGYNVEKAMDVLLDLSAPSN 226 (511)
Q Consensus 196 ~~~vIrdVL~~cGyDv~ks~d~LLd~S~~~~ 226 (511)
...+|+++|.+||+++.++-. +|.+|-.++
T Consensus 20 E~~~i~~aL~~~~gn~~~aA~-~LGisr~tL 49 (63)
T 3e7l_A 20 EKIFIEEKLREYDYDLKRTAE-EIGIDLSNL 49 (63)
T ss_dssp HHHHHHHHHHHTTTCHHHHHH-HHTCCHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHH-HHCcCHHHH
Confidence 578899999999999998866 556665543
No 90
>1je3_A EC005, hypothetical 8.6 kDa protein in AMYA-FLIE intergenic region; mixed alpha-beta structure, structural genomics; NMR {Escherichia coli} SCOP: d.68.3.3
Probab=37.52 E-value=13 Score=31.32 Aligned_cols=66 Identities=12% Similarity=0.178 Sum_probs=48.2
Q ss_pred ceeecCCCChHHHHHHHHHHHHHHHhcCCCceEEEEEccCCCCCCCcchHHHHHHHHHhCCCceee--CCCcEEEEEe
Q 043016 432 ITIDLHGQHVKPAMKLLKLHLVMVSYAQSVQTLRVITGCGSHGVGKSKLKQSVIELVENEGLHWSE--ENRGTVLIKL 507 (511)
Q Consensus 432 ~~IDLHGL~V~EAl~~Lk~~L~~~~~~~s~~~L~VITG~G~HS~G~akLKpAV~~~Lek~gi~~~e--~n~G~IlV~L 507 (511)
.+||+-|+....-+-.++..|..+. ....|.|++-... .+ .-|..|+++.|+.+.. ..+|.+.|.|
T Consensus 28 ~~LD~rGl~CP~PvlktkkaL~~l~---~Ge~L~Vl~dd~~------a~-~dIp~~~~~~G~~v~~~e~~~~~~~i~I 95 (97)
T 1je3_A 28 YRLDMVGEPCPYPAVATLEAMPQLK---KGEILEVVSDCPQ------SI-NNIPLDARNHGYTVLDIQQDGPTIRYLI 95 (97)
T ss_dssp EEECSBCCSSSSSTHHHHHHTTTCC---SSCEEEEEEBCSS------SS-CHHHHHHHHHTCSEEEEEECSSSEEEEE
T ss_pred eEEeCCCCCCCHHHHHHHHHHHcCC---CCCEEEEEECCcc------hH-HHHHHHHHHCCCEEEEEEeeCCEEEEEE
Confidence 4799999999998888888877653 3456888876542 12 3488999999999863 3567666655
No 91
>2qsf_X RAD23, UV excision repair protein RAD23; alpha-beta structure, beta hairpin, transglutaminase fold, DNA-damage recognition, DNA repair; HET: DNA; 2.35A {Saccharomyces cerevisiae} PDB: 2qsg_X* 2qsh_X* 1x3z_B* 1x3w_B* 3esw_B*
Probab=36.97 E-value=32 Score=32.07 Aligned_cols=38 Identities=24% Similarity=0.344 Sum_probs=31.3
Q ss_pred HHHHHHHHHhhccccccchHHHHHHHhhcCCcHHHHHHHHHcc
Q 043016 179 EEMEQFLYSMLGDECQFSMAVVRDVLCQCGYNVEKAMDVLLDL 221 (511)
Q Consensus 179 ~d~E~FL~sMLGdgfqL~~~vIrdVL~~cGyDv~ks~d~LLd~ 221 (511)
+++=+=|+.| | +++..|.+||-.|+.|++.|...||..
T Consensus 131 ~eaI~rL~~m---G--F~r~~viqA~~ac~knee~Aan~L~~~ 168 (171)
T 2qsf_X 131 DQAISRLCEL---G--FERDLVIQVYFACDKNEEAAANILFSD 168 (171)
T ss_dssp HHHHHHHHTT---T--CCHHHHHHHHHHTTTCHHHHHHHHTTC
T ss_pred HHHHHHHHHc---C--CCHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 3344567777 3 599999999999999999999999964
No 92
>1umq_A Photosynthetic apparatus regulatory protein; DNA-binding protein, response regulator, DNA binding domain, helix-turn-helix; NMR {Rhodobacter sphaeroides} SCOP: a.4.1.12
Probab=35.41 E-value=22 Score=29.04 Aligned_cols=30 Identities=13% Similarity=0.244 Sum_probs=23.1
Q ss_pred chHHHHHHHhhcCCcHHHHHHHHHcccCCCC
Q 043016 196 SMAVVRDVLCQCGYNVEKAMDVLLDLSAPSN 226 (511)
Q Consensus 196 ~~~vIrdVL~~cGyDv~ks~d~LLd~S~~~~ 226 (511)
...+|+++|.+||+++.++-. +|.+|-.++
T Consensus 42 Er~~I~~aL~~~~GN~s~AA~-~LGISR~TL 71 (81)
T 1umq_A 42 RWEHIQRIYEMCDRNVSETAR-RLNMHRRTL 71 (81)
T ss_dssp HHHHHHHHHHHTTSCHHHHHH-HHTSCHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHH-HhCCCHHHH
Confidence 357899999999999998865 566665543
No 93
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=35.30 E-value=47 Score=28.96 Aligned_cols=26 Identities=27% Similarity=0.259 Sum_probs=25.0
Q ss_pred CCHHHHHHHHHHhcCChhHHHHHHHh
Q 043016 57 VSLEEATSAFCEANGDVNKAEELLTA 82 (511)
Q Consensus 57 ~Sl~~ia~Ay~~A~~d~~~A~eiL~~ 82 (511)
|+.+.|..|...-++|+++|.|.|..
T Consensus 88 F~~~~a~~AL~~~~nd~erAlewL~~ 113 (118)
T 4ae4_A 88 FELKDIKEVLLLHNNDQDNALEDLMA 113 (118)
T ss_dssp CCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 99999999999999999999999985
No 94
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=35.24 E-value=30 Score=26.46 Aligned_cols=43 Identities=21% Similarity=0.330 Sum_probs=33.3
Q ss_pred HHHHHHHHHHhhccccccchHHHHHHHhhcCCcHHHHHHHHHccc
Q 043016 178 KEEMEQFLYSMLGDECQFSMAVVRDVLCQCGYNVEKAMDVLLDLS 222 (511)
Q Consensus 178 ~~d~E~FL~sMLGdgfqL~~~vIrdVL~~cGyDv~ks~d~LLd~S 222 (511)
.+.+|+-+-+..+-|| |+.-+.+.|.++..||+.|-.-||.|.
T Consensus 8 ~~~~~~~Ia~Lm~mGF--sr~~ai~AL~~a~nnve~AaniLlef~ 50 (52)
T 2ooa_A 8 LENVDAKIAKLMGEGY--AFEEVKRALEIAQNNVEVARSILREFA 50 (52)
T ss_dssp ---CHHHHHHHHHTTC--CHHHHHHHHHHTTTCHHHHHHHHHHHC
T ss_pred CCChHHHHHHHHHcCC--CHHHHHHHHHHhCCCHHHHHHHHHHhc
Confidence 3455566666666665 789999999999999999999999873
No 95
>1eh2_A EPS15; calcium binding, signaling domain, NPF binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6 PDB: 2jxc_A 1f8h_A 1ff1_A
Probab=34.97 E-value=63 Score=26.85 Aligned_cols=50 Identities=16% Similarity=0.234 Sum_probs=39.2
Q ss_pred CccHHHHHHH--HHHhh--ccccccchHHHHHHHhhcCCcHHHHHHHHHcccCCCC
Q 043016 175 GFDKEEMEQF--LYSML--GDECQFSMAVVRDVLCQCGYNVEKAMDVLLDLSAPSN 226 (511)
Q Consensus 175 ~~~~~d~E~F--L~sML--GdgfqL~~~vIrdVL~~cGyDv~ks~d~LLd~S~~~~ 226 (511)
.++.++.++| +|.++ |+| .|+...++.||.++|.. +.-++.++...+...
T Consensus 8 ~ls~~e~~~~~~~F~~~D~~dG-~Is~~el~~~l~~~gl~-~~el~~i~~~~D~d~ 61 (106)
T 1eh2_A 8 AVKPEDKAKYDAIFDSLSPVNG-FLSGDKVKPVLLNSKLP-VDILGRVWELSDIDH 61 (106)
T ss_dssp SSCHHHHHHHHHHHTTSCCSSS-CCBHHHHHHHHHTTTCC-HHHHHHHHHHHCSSC
T ss_pred CCCHHHHHHHHHHHHHhCCCCC-eEcHHHHHHHHHHcCCC-HHHHHHHHHHHcCCC
Confidence 3567888888 77776 666 59999999999999977 556888888876553
No 96
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=33.44 E-value=30 Score=27.03 Aligned_cols=36 Identities=25% Similarity=0.318 Sum_probs=29.1
Q ss_pred HHHHHhhccccccchHHHHHHHhhcCC-cHHHHHHHHHcccC
Q 043016 183 QFLYSMLGDECQFSMAVVRDVLCQCGY-NVEKAMDVLLDLSA 223 (511)
Q Consensus 183 ~FL~sMLGdgfqL~~~vIrdVL~~cGy-Dv~ks~d~LLd~S~ 223 (511)
+=|..| | ++.+.++..|-.||- |++.||+.||.-..
T Consensus 14 ~~L~~M---G--F~~~~a~~AL~~t~n~~~e~A~~wL~~h~~ 50 (64)
T 2crn_A 14 EPLLAM---G--FPVHTALKALAATGRKTAEEALAWLHDHCN 50 (64)
T ss_dssp HHHHHT---S--CCHHHHHHHHHHHTSCCHHHHHHHHHHHSS
T ss_pred HHHHHc---C--CCHHHHHHHHHHhCCCCHHHHHHHHHhCCC
Confidence 445555 3 677999999999987 99999999997654
No 97
>1eto_A FIS, factor for inversion stimulation; transcriptional activation region, DNA-binding protein, transcription activator; 1.90A {Escherichia coli} SCOP: a.4.1.12 PDB: 1etq_A 1ety_A 1fia_A 3fis_A 3iv5_A* 3jr9_A* 3jra_A* 3jrb_A* 3jrc_A* 3jrd_A* 3jre_A* 3jrf_A* 3jrg_A* 3jrh_A* 3jri_A* 1f36_A 1etv_A 1etk_A 1etx_A 1fip_A ...
Probab=33.19 E-value=45 Score=27.93 Aligned_cols=30 Identities=10% Similarity=0.051 Sum_probs=23.4
Q ss_pred cchHHHHHHHhhcCCcHHHHHHHHHcccCCC
Q 043016 195 FSMAVVRDVLCQCGYNVEKAMDVLLDLSAPS 225 (511)
Q Consensus 195 L~~~vIrdVL~~cGyDv~ks~d~LLd~S~~~ 225 (511)
+...+|+++|..||+++.++-. +|.+|-.+
T Consensus 58 ~Er~~I~~aL~~~~gn~~~AA~-~LGIsR~T 87 (98)
T 1eto_A 58 VEQPLLDMVMQYTLGNQTRAAL-MMGINRGT 87 (98)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHH-HHTSCHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHH-HhCCCHHH
Confidence 4578899999999999998865 46665444
No 98
>1vdl_A Ubiquitin carboxyl-terminal hydrolase 25; UBA domain, mouse cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.5.2.1
Probab=31.35 E-value=2e+02 Score=23.63 Aligned_cols=43 Identities=23% Similarity=0.312 Sum_probs=36.4
Q ss_pred hHHHHHHHHHhhCCCCHHHHHHHHHHhcCChhHHHHHHHhhcC
Q 043016 43 KNQIIHSLTEAFGSVSLEEATSAFCEANGDVNKAEELLTALTE 85 (511)
Q Consensus 43 ~~k~l~~LleaFgs~Sl~~ia~Ay~~A~~d~~~A~eiL~~~~~ 85 (511)
.+..|+-|-|-=|---++=.-.||.-.+||+-.|.-||++=.-
T Consensus 24 ~q~lLnQLrEITGiqD~~~L~~ALkas~Gdl~~AV~~LT~~~~ 66 (80)
T 1vdl_A 24 QQTFLNQLREITGINDAQILQQALKDSNGNLELAVAFLTAKNA 66 (80)
T ss_dssp HHHHHHHHHHHSCCCCHHHHHHHHHHHTSCHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHhccCCHHHHHHHHhcccc
Confidence 4478999999888777777789999999999999999998433
No 99
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=30.14 E-value=73 Score=26.07 Aligned_cols=40 Identities=33% Similarity=0.307 Sum_probs=29.8
Q ss_pred HHHHHHHHHhhccccccchHHHHHHHhhcC-CcHHHHHHHHHcccC
Q 043016 179 EEMEQFLYSMLGDECQFSMAVVRDVLCQCG-YNVEKAMDVLLDLSA 223 (511)
Q Consensus 179 ~d~E~FL~sMLGdgfqL~~~vIrdVL~~cG-yDv~ks~d~LLd~S~ 223 (511)
+++=+=|..| | ++...++..|-.+| .|++.|++.||.-..
T Consensus 30 e~~v~~L~~M---G--F~~~~a~~AL~~t~n~n~e~A~ewL~~h~~ 70 (84)
T 1vek_A 30 EEIVAQLVSM---G--FSQLHCQKAAINTSNAGVEEAMNWLLSHMD 70 (84)
T ss_dssp HHHHHHHHHH---T--CCHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHc---C--CCHHHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence 3343556666 3 67788999988776 799999999997543
No 100
>2kw7_A Conserved domain protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Porphyromonas gingivalis}
Probab=29.26 E-value=2.5e+02 Score=24.61 Aligned_cols=74 Identities=16% Similarity=0.188 Sum_probs=50.7
Q ss_pred cceeecCCCChHHHHHHHHHHHHHHHhcCCCceEEEEEccCCCCCCCcchHHHHHHHHHhCCCceeeCCCcEEEEEec
Q 043016 431 VITIDLHGQHVKPAMKLLKLHLVMVSYAQSVQTLRVITGCGSHGVGKSKLKQSVIELVENEGLHWSEENRGTVLIKLD 508 (511)
Q Consensus 431 ~~~IDLHGL~V~EAl~~Lk~~L~~~~~~~s~~~L~VITG~G~HS~G~akLKpAV~~~Lek~gi~~~e~n~G~IlV~L~ 508 (511)
...+|.-|+--.+....|...|..+...... .+.|+|=.... |. -+..--.++..++|+--.+.+.|+|++--.
T Consensus 19 ~~V~D~a~~Ls~~~~~~L~~~l~~~e~~t~~-qi~Vv~v~~l~--g~-~~~~~A~~~f~~wgig~~~~~nGvLl~va~ 92 (157)
T 2kw7_A 19 RLVTDEAGLLSNAQEEVMNGRLRAIRSSHAV-EFAVVTLPSIG--DA-PLEDFTLKLARQWGVGNEKNNNGLLLVLVL 92 (157)
T ss_dssp TCEEECSSCSCHHHHHHHHHHHHHHHHHTCC-EEEEEEESBCT--TC-CHHHHHHHHHHHHSTTTTSCTTEEEEEEET
T ss_pred ceEEcccccCCHHHHHHHHHHHHHHHHhhCC-eEEEEEEcCCC--CC-CHHHHHHHHHHHhCCCCCCCCCcEEEEEEe
Confidence 4689999999899999999999888765444 56666533221 22 244445566677777666678898766433
No 101
>2dam_A ETEA protein; KIAA0887, UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.62 E-value=81 Score=24.68 Aligned_cols=41 Identities=27% Similarity=0.334 Sum_probs=33.0
Q ss_pred cHHHHHHHHHHhhc-cccccchHHHHHHHhhcCCcHHHHHHHHHcc
Q 043016 177 DKEEMEQFLYSMLG-DECQFSMAVVRDVLCQCGYNVEKAMDVLLDL 221 (511)
Q Consensus 177 ~~~d~E~FL~sMLG-dgfqL~~~vIrdVL~~cGyDv~ks~d~LLd~ 221 (511)
++++.-+-.+.+.| . +..+.+..|..+++|++.|++..++.
T Consensus 17 ~~~e~i~qF~~ITg~~----d~~~A~~~Le~~~WnLe~Av~~ff~~ 58 (67)
T 2dam_A 17 EQTEKLLQFQDLTGIE----SMDQCRHTLEQHNWNIEAAVQDRLNE 58 (67)
T ss_dssp HHHHHHHHHHHHHCCS----CHHHHHHHHHHHTSCHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHhCCC----CHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 45554455567888 4 58899999999999999999999875
No 102
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=27.76 E-value=50 Score=25.31 Aligned_cols=48 Identities=10% Similarity=0.265 Sum_probs=35.0
Q ss_pred hhccchhHHHHHHHHHhhCCCCHHHHHHHHHHhcCChhHHHHHHHhhc
Q 043016 37 EVQNDTKNQIIHSLTEAFGSVSLEEATSAFCEANGDVNKAEELLTALT 84 (511)
Q Consensus 37 ~~~~~~~~k~l~~LleaFgs~Sl~~ia~Ay~~A~~d~~~A~eiL~~~~ 84 (511)
+.|..+-+.+++.|.+-|+.+--+=|.+.+..-+|+++.|-+-|..|.
T Consensus 6 ~i~~~e~~~~~~~L~~MFP~lD~evI~~Vl~a~~G~~~~~IdaLLqms 53 (54)
T 1p3q_Q 6 KIEENERKDTLNTLQNMFPDMDPSLIEDVCIAAASRIGPCVDALLSLS 53 (54)
T ss_dssp HHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHSCC--CGGGC------
T ss_pred HHHHHHHHHHHHHHHHHcccCCHHHHHHHHHHcCCCHHHHHHHHHhhc
Confidence 345556668999999999999999999999999999999999988764
No 103
>1k6k_A ATP-dependent CLP protease ATP-binding subunit CLPA; chaperone, ATPase, adaptor binding, X-RAY, structure, N-domain, hydrolase; 1.80A {Escherichia coli} SCOP: a.174.1.1 PDB: 1r6c_X 1r6o_A* 1r6q_A* 1mg9_B* 1lzw_B* 1mbx_A* 1mbv_A 1mbu_A*
Probab=27.08 E-value=47 Score=28.26 Aligned_cols=34 Identities=21% Similarity=0.409 Sum_probs=27.4
Q ss_pred HHHHHHHHhhccccccchHHHHHHHhhcCCcHHHHHHHHH
Q 043016 180 EMEQFLYSMLGDECQFSMAVVRDVLCQCGYNVEKAMDVLL 219 (511)
Q Consensus 180 d~E~FL~sMLGdgfqL~~~vIrdVL~~cGyDv~ks~d~LL 219 (511)
+.|.+|..||-++ . ++.+|..||.|++.-.+.|-
T Consensus 26 ~~eHlLlaLl~~~-----~-~~~iL~~~g~~~~~l~~~l~ 59 (143)
T 1k6k_A 26 TVEHLLLALLSNP-----S-AREALEACSVDLVALRQELE 59 (143)
T ss_dssp CHHHHHHHHTTCH-----H-HHHHHHHTTCCHHHHHHHHH
T ss_pred CHHHHHHHHHcCc-----h-HHHHHHHcCCCHHHHHHHHH
Confidence 4689999999887 1 89999999999877555543
No 104
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium, RAS signal transduction, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: a.39.1.6
Probab=27.03 E-value=93 Score=24.43 Aligned_cols=47 Identities=6% Similarity=0.138 Sum_probs=33.6
Q ss_pred cHHHHHHH--HHHhh---ccccccchHHHHHHHhhcCCcHHHHHHHHHcccCCC
Q 043016 177 DKEEMEQF--LYSML---GDECQFSMAVVRDVLCQCGYNVEKAMDVLLDLSAPS 225 (511)
Q Consensus 177 ~~~d~E~F--L~sML---GdgfqL~~~vIrdVL~~cGyDv~ks~d~LLd~S~~~ 225 (511)
+.++.++| +|.++ |+| .|+..-++.+|..+|.. +.-++.++...+..
T Consensus 4 s~~~~~~~~~~F~~~D~d~dG-~I~~~el~~~l~~~g~~-~~~~~~i~~~~D~d 55 (92)
T 1fi6_A 4 TDEQRQYYVNQFKTIQPDLNG-FIPGSAAKEFFTKSKLP-ILELSHIWELSDFD 55 (92)
T ss_dssp CHHHHHHHHHHHTTTCCSTTC-EEEHHHHHHHHHHHSSC-HHHHHHHHHHHCTT
T ss_pred CHHHHHHHHHHHHHHCCCCCC-cCcHHHHHHHHHHcCCC-HHHHHHHHHHHCCC
Confidence 45666776 57777 455 48999999999999976 44577777765443
No 105
>1nkw_F 50S ribosomal protein L9; ribosome, large subunit, X- RAY structure, peptidyl-transferase, peptide bond formation; 3.10A {Deinococcus radiodurans} SCOP: i.1.1.2 PDB: 1nwx_F* 1nwy_F* 1sm1_F* 1xbp_F* 1pnu_F 1pny_F 1vor_I 1vou_I 1vow_I 1voy_I 1vp0_I
Probab=26.67 E-value=25 Score=31.84 Aligned_cols=25 Identities=16% Similarity=0.404 Sum_probs=21.8
Q ss_pred hhCCCCHHHHHHHHHHhcCChhHHH
Q 043016 53 AFGSVSLEEATSAFCEANGDVNKAE 77 (511)
Q Consensus 53 aFgs~Sl~~ia~Ay~~A~~d~~~A~ 77 (511)
-|||+|-.||+.|..++|-++|+-.
T Consensus 87 lfGSVt~~dIa~al~~~g~~idk~~ 111 (146)
T 1nkw_F 87 IYGAVTHQDVANSLDQLGFDVDRRK 111 (146)
T ss_pred eeeccCHHHHHHHHHHcCCeechhe
Confidence 4899999999999999988888754
No 106
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=25.60 E-value=35 Score=35.16 Aligned_cols=41 Identities=17% Similarity=0.218 Sum_probs=33.5
Q ss_pred chhHHHHHHHHHhhCCCCHHHHHHHHHHhcCChhHHHHHHHhh
Q 043016 41 DTKNQIIHSLTEAFGSVSLEEATSAFCEANGDVNKAEELLTAL 83 (511)
Q Consensus 41 ~~~~k~l~~LleaFgs~Sl~~ia~Ay~~A~~d~~~A~eiL~~~ 83 (511)
.+++.+++-|. ++ .|+-+.+-.||...++|+++|+++|.+-
T Consensus 323 ~ee~eaI~rL~-~m-GF~~~~a~~al~a~~~n~e~A~~~L~~~ 363 (368)
T 1oqy_A 323 PQEKEAIERLK-AL-GFPESLVIQAYFACEKNENLAANFLLSQ 363 (368)
T ss_dssp TTTHHHHHHHH-HH-TCCSHHHHHHTSSSSSCSSHHHHHHHHH
T ss_pred CcCHHHHHHHH-Hc-CCCHHHHHHHHHHcCCCHHHHHHHHhhC
Confidence 34556776665 44 4999999999999999999999999964
No 107
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=24.76 E-value=85 Score=27.08 Aligned_cols=47 Identities=17% Similarity=0.229 Sum_probs=39.2
Q ss_pred CccHHHHHHHHHHhhcc-ccccchHHHHHHHhhcCCcHHHHHHHHHcc
Q 043016 175 GFDKEEMEQFLYSMLGD-ECQFSMAVVRDVLCQCGYNVEKAMDVLLDL 221 (511)
Q Consensus 175 ~~~~~d~E~FL~sMLGd-gfqL~~~vIrdVL~~cGyDv~ks~d~LLd~ 221 (511)
.+..+++.++|..++.. +..++.++++.+...||.|+...+..|-.+
T Consensus 160 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~l~~~l~~~ 207 (226)
T 2chg_A 160 PVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGGDFRKAINALQGA 207 (226)
T ss_dssp CCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 55789999999998853 778999999999999999999877765443
No 108
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=24.60 E-value=42 Score=34.56 Aligned_cols=38 Identities=16% Similarity=0.279 Sum_probs=32.5
Q ss_pred hHHHHHHHHHhhCCCCHHHHHHHHHHhcCChhHHHHHHHh
Q 043016 43 KNQIIHSLTEAFGSVSLEEATSAFCEANGDVNKAEELLTA 82 (511)
Q Consensus 43 ~~k~l~~LleaFgs~Sl~~ia~Ay~~A~~d~~~A~eiL~~ 82 (511)
....+..|+ .+| |+-+++..|.+.+++|++.|.|+|+.
T Consensus 168 ~~~~i~~l~-~MG-f~~~~~~~AL~a~~nn~~~A~e~L~~ 205 (368)
T 1oqy_A 168 YETMLTEIM-SMG-YERERVVAALRASYNNPHRAVEYLLT 205 (368)
T ss_dssp HHHHHHHHH-TTT-CCSHHHHHHHHHSCSSTTHHHHTTTT
T ss_pred hHHHHHHHH-HcC-CCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 446677776 466 99999999999999999999999974
No 109
>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3
Probab=24.16 E-value=1.3e+02 Score=21.03 Aligned_cols=37 Identities=16% Similarity=0.389 Sum_probs=29.7
Q ss_pred HHHHHHHHHhhccccccchHHHHHHHhhcCCcHHHHHHHHHc
Q 043016 179 EEMEQFLYSMLGDECQFSMAVVRDVLCQCGYNVEKAMDVLLD 220 (511)
Q Consensus 179 ~d~E~FL~sMLGdgfqL~~~vIrdVL~~cGyDv~ks~d~LLd 220 (511)
+-+++|. +.-| .+..+-+..|..|++|++.|++...+
T Consensus 7 ~~i~~F~-~iTg----~~~~~A~~~L~~~~wdle~Ai~~ff~ 43 (46)
T 1v92_A 7 DALREFV-AVTG----AEEDRARFFLESAGWDLQIALASFYE 43 (46)
T ss_dssp HHHHHHH-HHTC----CCHHHHHHHHHHTTSCSHHHHHHHHH
T ss_pred HHHHHHH-HHhC----cCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 4466665 5555 37899999999999999999998765
No 110
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=23.65 E-value=28 Score=28.23 Aligned_cols=29 Identities=17% Similarity=0.185 Sum_probs=23.1
Q ss_pred chHHHHHHHhhcCCcHHHHHHHHHcccCCC
Q 043016 196 SMAVVRDVLCQCGYNVEKAMDVLLDLSAPS 225 (511)
Q Consensus 196 ~~~vIrdVL~~cGyDv~ks~d~LLd~S~~~ 225 (511)
...+|+++|.+||+++.++-. +|.+|-.+
T Consensus 52 E~~~i~~aL~~~~gn~~~aA~-~LGIsr~t 80 (91)
T 1ntc_A 52 ERTLLTTALRHTQGHKQEAAR-LLGWGAAT 80 (91)
T ss_dssp HHHHHHHHHHHTTTCTTHHHH-HTTCCHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHH-HHCcCHHH
Confidence 578999999999999998765 56666444
No 111
>2e2a_A Protein (enzyme IIA); helical bundles, PTS, transferase, phosphotransferase system; 2.10A {Lactococcus lactis} SCOP: a.7.2.1 PDB: 1e2a_A
Probab=23.55 E-value=1.8e+02 Score=24.89 Aligned_cols=47 Identities=17% Similarity=0.128 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 043016 378 SCYQKASAAYSKGEWGYAAHLSEQGKSLTKLAQKADEKASHDIFKARNKS 427 (511)
Q Consensus 378 e~~~kAa~Ay~rGd~~~A~~Lseegr~~~~karean~~AA~~If~~rN~~ 427 (511)
.++-+|-++.+.||...|..+.++|+.....+-..+ .+.|-..-+.+
T Consensus 22 S~~~eAl~~Ak~g~fe~A~~~l~eA~~~l~~AH~~Q---t~liq~Ea~g~ 68 (105)
T 2e2a_A 22 SKLLEALKAAENGDFAKADSLVVEAGSCIAEAHSSQ---TGMLAREASGE 68 (105)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhCCC
Confidence 456678888899999999999999998666555444 44555554443
No 112
>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A
Probab=23.33 E-value=25 Score=27.30 Aligned_cols=16 Identities=31% Similarity=0.517 Sum_probs=13.6
Q ss_pred hCCC-CHHHHHHHHHHh
Q 043016 54 FGSV-SLEEATSAFCEA 69 (511)
Q Consensus 54 Fgs~-Sl~~ia~Ay~~A 69 (511)
+|+| |.||+|.||..|
T Consensus 30 LGtf~T~eeAA~AyD~A 46 (63)
T 1gcc_A 30 LGTFETAEDAALAYDRA 46 (63)
T ss_dssp EEEESSHHHHHHHHHHH
T ss_pred eeeCCCHHHHHHHHHHH
Confidence 5787 999999999764
No 113
>1wcr_A PTS system, N, N'-diacetylchitobiose-specific IIA component; mutagenesis, transferase, sugar transport, phosphotransferase; NMR {Escherichia coli} PDB: 2wy2_A 2wwv_A
Probab=23.11 E-value=1.8e+02 Score=24.70 Aligned_cols=45 Identities=16% Similarity=0.084 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 043016 378 SCYQKASAAYSKGEWGYAAHLSEQGKSLTKLAQKADEKASHDIFKARN 425 (511)
Q Consensus 378 e~~~kAa~Ay~rGd~~~A~~Lseegr~~~~karean~~AA~~If~~rN 425 (511)
.++-+|-++.+.||...|..+.++|++....+-..+ .+.|-..-+
T Consensus 20 s~~~eAl~~Ak~g~fe~A~~~l~eA~~~l~~AH~~Q---t~liq~Ea~ 64 (103)
T 1wcr_A 20 SLAYAALKQAKQGDFAAAKAMMDQSRMALNEAHLVQ---TKLIEGDAG 64 (103)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHH---HHHHHHCCS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhC
Confidence 456678888899999999999999998766555544 344444433
No 114
>2i7u_A Four-alpha-helix bundle; HOMO dimer, anesthetic binding, de novo protein/ligand binding protein complex; NMR {Synthetic} PDB: 2jst_A
Probab=22.27 E-value=2.6e+02 Score=21.23 Aligned_cols=29 Identities=17% Similarity=0.226 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCh
Q 043016 364 VFRKDAKQHWNSMKSCYQKASAAYSKGEW 392 (511)
Q Consensus 364 ~lR~~A~e~~~~Rne~~~kAa~Ay~rGd~ 392 (511)
.+|.+|.......+.+-..|+.-..-|.+
T Consensus 3 klreeaaklfeewkklaeeaakllegggg 31 (62)
T 2i7u_A 3 KLREEAAKLFEEWKKLAEEAAKLLEGGGG 31 (62)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHCSSC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 47899999999999999999888887663
No 115
>3k1s_A PTS system, cellobiose-specific IIA component; all alpha protein, spectrin repeat-like, transferase, structural genomics; HET: MSE; 2.30A {Bacillus anthracis} SCOP: a.7.2.0
Probab=22.22 E-value=1.9e+02 Score=24.85 Aligned_cols=49 Identities=14% Similarity=0.010 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 043016 374 NSMKSCYQKASAAYSKGEWGYAAHLSEQGKSLTKLAQKADEKASHDIFKARNK 426 (511)
Q Consensus 374 ~~Rne~~~kAa~Ay~rGd~~~A~~Lseegr~~~~karean~~AA~~If~~rN~ 426 (511)
..|. ++-+|-++.+.||...|..+.++|++...++-..+- +.|-..-+.
T Consensus 21 ~Ars-~~~eAl~~Ak~gdfe~A~~~l~eA~~~l~~AH~~QT---~Liq~Ea~g 69 (109)
T 3k1s_A 21 NARS-FAMEALQFAKQGKMAEADEAMVKAKEAINEAHHFQT---ELIQSEARG 69 (109)
T ss_dssp HHHH-HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHTT
T ss_pred HHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhCC
Confidence 3443 555677788899999999999999887766655543 444444443
No 116
>4dbg_B Ring finger protein 31; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens}
Probab=21.56 E-value=75 Score=29.46 Aligned_cols=28 Identities=29% Similarity=0.476 Sum_probs=25.0
Q ss_pred hhCCCCHHHHHHHHHHhcCChhHHHHHH
Q 043016 53 AFGSVSLEEATSAFCEANGDVNKAEELL 80 (511)
Q Consensus 53 aFgs~Sl~~ia~Ay~~A~~d~~~A~eiL 80 (511)
.+|.+|-+|+..|...++||++.|..-+
T Consensus 71 ~~g~~s~~EAr~Aw~~~~Gd~~~Av~~c 98 (162)
T 4dbg_B 71 GLGAFSCQEARRAWLDRHGNLDEAVEEC 98 (162)
T ss_dssp GGCCCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred CCCcccHHHHHHHHHHccCChHHHHHHH
Confidence 4788999999999999999999998654
No 117
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=21.42 E-value=97 Score=29.04 Aligned_cols=47 Identities=9% Similarity=0.259 Sum_probs=40.2
Q ss_pred CccHHHHHHHHHHhhc-cccccchHHHHHHHhhcCCcHHHHHHHHHcc
Q 043016 175 GFDKEEMEQFLYSMLG-DECQFSMAVVRDVLCQCGYNVEKAMDVLLDL 221 (511)
Q Consensus 175 ~~~~~d~E~FL~sMLG-dgfqL~~~vIrdVL~~cGyDv~ks~d~LLd~ 221 (511)
.+..+++.++|...+. +|+.++.+.+..+...||.|+-.++..|=.+
T Consensus 165 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~r~a~~~l~~~ 212 (323)
T 1sxj_B 165 KLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEGDMRQAINNLQST 212 (323)
T ss_dssp CCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 4578999999998875 6788999999999999999999988877443
No 118
>3dtp_E RLC, myosin regulatory light chain; muscle protein, smooth muscle, myosin subfragment 2, heavy meromyosin, essential light chain; 20.00A {Avicularia avicularia}
Probab=21.11 E-value=1.4e+02 Score=26.14 Aligned_cols=33 Identities=12% Similarity=0.092 Sum_probs=23.4
Q ss_pred hhHHHHHHHHHhh-----CCCCHHHHHHHHHHhcCChh
Q 043016 42 TKNQIIHSLTEAF-----GSVSLEEATSAFCEANGDVN 74 (511)
Q Consensus 42 ~~~k~l~~LleaF-----gs~Sl~~ia~Ay~~A~~d~~ 74 (511)
++.+.|..++..| |.+|.+|+..++...+.++.
T Consensus 54 ~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~lg~~~~ 91 (196)
T 3dtp_E 54 HQVQEFKEAFQLIDQDKDGFISKNDIRATFDSLGRLCT 91 (196)
T ss_dssp TTHHHHHHHHHHHCCSCSSBCCHHHHHHHHHTTSCCCC
T ss_pred HHHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHhCCCCC
Confidence 4446677777777 34799999999987765543
No 119
>2y1q_A CLPC N-domain, negative regulator of genetic competence CLPC/MEC; transcription, proteolysis; 1.50A {Bacillus subtilis} PDB: 2y1r_A* 2k77_A
Probab=21.11 E-value=55 Score=28.04 Aligned_cols=38 Identities=18% Similarity=0.247 Sum_probs=29.6
Q ss_pred HHHHHHHHhhccccccchHHHHHHHhhcCCcHHHHHHHHHcc
Q 043016 180 EMEQFLYSMLGDECQFSMAVVRDVLCQCGYNVEKAMDVLLDL 221 (511)
Q Consensus 180 d~E~FL~sMLGdgfqL~~~vIrdVL~~cGyDv~ks~d~LLd~ 221 (511)
+.|.+|..||-++- ++++.+|..||.|++.-.+.|-..
T Consensus 30 ~~eHlLlaLl~~~~----~~~~~iL~~~g~~~~~l~~~l~~~ 67 (150)
T 2y1q_A 30 GTEHILLGLVREGE----GIAAKALQALGLGSEKIQKEVESL 67 (150)
T ss_dssp CHHHHHHHHHHHCS----SHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred cHHHHHHHHHhCCC----CHHHHHHHHcCCCHHHHHHHHHHH
Confidence 46899999997653 478999999999987766655443
No 120
>1div_A Ribosomal protein L9; rRNA-binding; 2.60A {Geobacillus stearothermophilus} SCOP: d.99.1.1 d.100.1.1 PDB: 1giy_K 1yl3_K 2b66_I 2b9n_I 2b9p_I 487d_K
Probab=21.02 E-value=30 Score=31.34 Aligned_cols=24 Identities=17% Similarity=0.362 Sum_probs=21.1
Q ss_pred hCCCCHHHHHHHHHHh-cCChhHHH
Q 043016 54 FGSVSLEEATSAFCEA-NGDVNKAE 77 (511)
Q Consensus 54 Fgs~Sl~~ia~Ay~~A-~~d~~~A~ 77 (511)
|||+|-.||+.|..++ |-++|+-.
T Consensus 90 fGSVt~~dIa~al~~~~g~~idk~~ 114 (149)
T 1div_A 90 FGSITSKQIAESLQAQHGLKLDKRK 114 (149)
T ss_dssp EEEECHHHHHHHHHHHHCCCCCGGG
T ss_pred EeecCHHHHHHHHHHhhCCeechhe
Confidence 8999999999999988 88888753
No 121
>3l8r_A PTCA, putative PTS system, cellobiose-specific IIA component; helix; 2.50A {Streptococcus mutans} SCOP: a.7.2.0
Probab=20.73 E-value=2.1e+02 Score=25.13 Aligned_cols=50 Identities=12% Similarity=0.008 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 043016 373 WNSMKSCYQKASAAYSKGEWGYAAHLSEQGKSLTKLAQKADEKASHDIFKARNK 426 (511)
Q Consensus 373 ~~~Rne~~~kAa~Ay~rGd~~~A~~Lseegr~~~~karean~~AA~~If~~rN~ 426 (511)
...|. ++-+|-++.+.||...|..+.++|++...++-..+- +.|-..-+.
T Consensus 35 G~ARS-~~~eAl~~Ak~gdfe~A~~~l~eA~e~l~~AH~~QT---~Liq~EA~G 84 (120)
T 3l8r_A 35 GNARS-IVHEAFDAMREKNYILAEQKLQEANDELLKAHQAQT---DLLQEYASG 84 (120)
T ss_dssp HHHHH-HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHTT
T ss_pred HHHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhCC
Confidence 44444 555677778899999999999999887766555443 445444443
No 122
>3v2d_I 50S ribosomal protein L9; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2j03_I 2jl6_I 2jl8_I 2v47_I 2v49_I 2wdi_I 2wdj_I 2wdl_I 2wdn_I 2wh2_I 2x9s_I 2x9u_I 2xg0_I 2xg2_I 3hux_I 3huz_I 3i8f_K 3i8i_K 3i9c_K 3i9e_K ...
Probab=20.36 E-value=34 Score=31.02 Aligned_cols=23 Identities=17% Similarity=0.401 Sum_probs=20.1
Q ss_pred hCCCCHHHHHHHHHHh-cCChhHH
Q 043016 54 FGSVSLEEATSAFCEA-NGDVNKA 76 (511)
Q Consensus 54 Fgs~Sl~~ia~Ay~~A-~~d~~~A 76 (511)
|||+|-.||+.|..++ |-++|+-
T Consensus 89 fGSVt~~dIa~al~~~~g~~idk~ 112 (148)
T 3v2d_I 89 YGSVTAKDIAEALSRQHGVTIDPK 112 (148)
T ss_dssp SSCBCHHHHHHHHTTTTCCCCCTT
T ss_pred ccccCHHHHHHHHHHhcCCCcchh
Confidence 8999999999999988 7777763
No 123
>4fm3_A Uncharacterized hypothetical protein; PF14346 family protein, DUF4398, structural genomics, joint for structural genomics, JCSG; HET: PG4; 2.47A {Pseudomonas aeruginosa}
Probab=20.31 E-value=3.2e+02 Score=23.20 Aligned_cols=35 Identities=26% Similarity=0.289 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHH
Q 043016 377 KSCYQKASAAYSKGEWGYAAHLSEQGKSLTKLAQK 411 (511)
Q Consensus 377 ne~~~kAa~Ay~rGd~~~A~~Lseegr~~~~kare 411 (511)
...|.+|..|...++...|.+|++++..-.+++..
T Consensus 35 ~dKl~~A~~Am~~~~y~~Ar~lAEqAe~DArLAeA 69 (98)
T 4fm3_A 35 QDKYAAAQIAMTAESYKKARLLAEQAELDARLAES 69 (98)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhHHHHHH
Confidence 45699999999999999999999998877666554
No 124
>2dzl_A Protein FAM100B; UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.17 E-value=2.3e+02 Score=22.05 Aligned_cols=41 Identities=17% Similarity=0.331 Sum_probs=32.2
Q ss_pred HHHHHHHhhccccccchHHHHHHHhhcCCcHHHHHHHHHcccCCCC
Q 043016 181 MEQFLYSMLGDECQFSMAVVRDVLCQCGYNVEKAMDVLLDLSAPSN 226 (511)
Q Consensus 181 ~E~FL~sMLGdgfqL~~~vIrdVL~~cGyDv~ks~d~LLd~S~~~~ 226 (511)
+.+|. ..-| .+..+-+..|..+++|++.|++...+-.....
T Consensus 21 i~qF~-~iTg----~~~~~A~~~Le~~~WdLe~Al~~ff~~~~~~~ 61 (66)
T 2dzl_A 21 INQFV-LAAG----CAADQAKQLLQAAHWQFETALSTFFQETNIPN 61 (66)
T ss_dssp HHHHH-HHHC----CCHHHHHHHHHTTTTCHHHHHHHHHTCSCCCC
T ss_pred HHHHH-HHcC----CCHHHHHHHHHHcCCCHHHHHHHHHcCCCCCc
Confidence 66765 4544 47888999999999999999999987655444
Done!