BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 043018
         (300 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1MW5|A Chain A, Structure Of Hi1480 From Haemophilus Influenzae
 pdb|1MW5|B Chain B, Structure Of Hi1480 From Haemophilus Influenzae
          Length = 187

 Score = 28.1 bits (61), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 33/133 (24%), Positives = 53/133 (39%), Gaps = 19/133 (14%)

Query: 109 NPSSLIKRRDLFKTMMDVIKK----IGIEPTNFM--------FILAVRSMSVLSKATWEK 156
            P  L     LF    +VI K    +  EPT+ +        F+   +++     A+W  
Sbjct: 16  QPVKLYSVATLFHEFSEVITKLEHSVQKEPTSLLSEENWHKQFLKFAQALPAHGSASWLN 75

Query: 157 KKDALMSFSWSEDEFYLAFKRQPMLMLSSTKKIRELMDFFVNEIGLKPLDIVRCPNLLLI 216
             DAL +   +      AF  Q +  L S    R L    +N+IG +PLD+   P    +
Sbjct: 76  LDDALQAVVGNSRS---AFLHQLIAKLKS----RHLQVLELNKIGSEPLDLSNLPAPFYV 128

Query: 217 SLKKRVLPRWSVL 229
            L +    R ++L
Sbjct: 129 LLPESFAARITLL 141


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.138    0.394 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,873,092
Number of Sequences: 62578
Number of extensions: 286824
Number of successful extensions: 766
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 766
Number of HSP's gapped (non-prelim): 10
length of query: 300
length of database: 14,973,337
effective HSP length: 98
effective length of query: 202
effective length of database: 8,840,693
effective search space: 1785819986
effective search space used: 1785819986
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (24.3 bits)