BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043018
(300 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|B8IYS4|SYR_DESDA Arginine--tRNA ligase OS=Desulfovibrio desulfuricans (strain ATCC
27774 / DSM 6949) GN=argS PE=3 SV=1
Length = 550
Score = 34.3 bits (77), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 109 NPSSLIKRRDLFKTMMDVIKKIGIEPTNFMFI 140
P S+ R F+T+ DVIK++G + FMF+
Sbjct: 370 QPVSMSTRAGTFETLADVIKEVGTDAARFMFL 401
>sp|Q01X76|FOLD_SOLUE Bifunctional protein FolD OS=Solibacter usitatus (strain Ellin6076)
GN=folD PE=3 SV=1
Length = 306
Score = 33.1 bits (74), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
Query: 75 RIINCN-----IEKRLAPNVNTLRAHGVPEHLIAKLIMINPSSLIKRRDLFKTMMD 125
RI++ N I+ L P + L AHG P L L+ NP+S I R+ KT D
Sbjct: 3 RILDGNRVRDEIKGELKPRIAALAAHGRPPGLAVVLVGNNPASEIYVRNKIKTCHD 58
>sp|Q050L5|ENO_LEPBL Enolase OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain
L550) GN=eno PE=3 SV=1
Length = 432
Score = 32.7 bits (73), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 146 MSVLSKATWEKKKDALMSFSWSEDEFYLAFKRQPMLMLSSTKKIR--ELMDFFVNEIGLK 203
+ + KA ++ +KD L+ + EFY K++ +L + K+ EL+D++ N +
Sbjct: 226 LQAIEKAGYKPEKDVLLGLDAASSEFYDKSKKKYVLGAENNKEFSSAELVDYYANLVSKY 285
Query: 204 PL 205
P+
Sbjct: 286 PI 287
>sp|Q04SI9|ENO_LEPBJ Enolase OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain
JB197) GN=eno PE=3 SV=1
Length = 432
Score = 32.7 bits (73), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 146 MSVLSKATWEKKKDALMSFSWSEDEFYLAFKRQPMLMLSSTKKIR--ELMDFFVNEIGLK 203
+ + KA ++ +KD L+ + EFY K++ +L + K+ EL+D++ N +
Sbjct: 226 LQAIEKAGYKPEKDVLLGLDAASSEFYDKSKKKYVLGAENNKEFSSAELVDYYANLVSKY 285
Query: 204 PL 205
P+
Sbjct: 286 PI 287
>sp|Q8F4T8|ENO_LEPIN Enolase OS=Leptospira interrogans serogroup Icterohaemorrhagiae
serovar Lai (strain 56601) GN=eno PE=3 SV=1
Length = 432
Score = 32.7 bits (73), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 146 MSVLSKATWEKKKDALMSFSWSEDEFYLAFKRQPMLMLSSTKKIR--ELMDFFVNEIGLK 203
+ + KA ++ +KD L+ + EFY K++ +L + K+ EL+D++ N +
Sbjct: 226 LQAIEKAGYKPEKDVLLGLDAASSEFYDKSKKKYVLGAENNKEFSSAELVDYYANLVSKY 285
Query: 204 PL 205
P+
Sbjct: 286 PI 287
>sp|Q72QZ8|ENO_LEPIC Enolase OS=Leptospira interrogans serogroup Icterohaemorrhagiae
serovar copenhageni (strain Fiocruz L1-130) GN=eno PE=3
SV=1
Length = 432
Score = 32.7 bits (73), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 146 MSVLSKATWEKKKDALMSFSWSEDEFYLAFKRQPMLMLSSTKKIR--ELMDFFVNEIGLK 203
+ + KA ++ +KD L+ + EFY K++ +L + K+ EL+D++ N +
Sbjct: 226 LQAIEKAGYKPEKDVLLGLDAASSEFYDKSKKKYVLGAENNKEFSSAELVDYYANLVSKY 285
Query: 204 PL 205
P+
Sbjct: 286 PI 287
>sp|Q16825|PTN21_HUMAN Tyrosine-protein phosphatase non-receptor type 21 OS=Homo sapiens
GN=PTPN21 PE=1 SV=2
Length = 1174
Score = 32.0 bits (71), Expect = 5.7, Method: Composition-based stats.
Identities = 27/96 (28%), Positives = 45/96 (46%), Gaps = 5/96 (5%)
Query: 6 LADPEKSLRPKIDYFESVGISGADL--PKFLCSNKQLLVVSLKSNIIPIFEFLKGLVQTN 63
L +P+ L+P + I+G+D+ P +L S++ V+ P +E + + Q N
Sbjct: 403 LNNPQPYLQPS-PMSSNPSITGSDVMRPDYLPSHRHSAVIPPSYRPTPDYETV--MKQLN 459
Query: 64 VNLVHAVKQSSRIINCNIEKRLAPNVNTLRAHGVPE 99
LVHA +QS + N NI A + + PE
Sbjct: 460 RGLVHAERQSHSLRNLNIGSSYAYSRPAALVYSQPE 495
>sp|Q00974|YEA4_KLULA UDP-N-acetylglucosamine transporter YEA4 OS=Kluyveromyces lactis
(strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 /
NRRL Y-1140 / WM37) GN=YEA4 PE=3 SV=1
Length = 328
Score = 31.6 bits (70), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 69/160 (43%), Gaps = 18/160 (11%)
Query: 137 FMFILAVRSMSVLSKAT-WEKKKDALMSFSWSEDEFYLAFKRQPMLMLSSTKKIRELMDF 195
F+ ++A MS+LS W K W E FY F P+ ML T+ E D
Sbjct: 171 FVVLVATALMSLLSLLNEWTYNKCGK---HWKETLFYSHFLALPLFMLGYTRLRDEFRDL 227
Query: 196 FVNEIGLKPLDIVRCPNLLLISLKKRVLPRWSVLQVLMSK--NLLKKDIDFIQALIVTKP 253
++ + + IV+ P I+ K +L +V Q + K N+L + D AL ++
Sbjct: 228 LISSDSMD-IPIVKLP----IATKLFMLIANNVTQFICIKGVNMLASNTD---ALTLSVV 279
Query: 254 VFERRFVTSYMDDSEVMMAYRDGLRVQAVVADCKNYSDEG 293
+ R+FV+ + + Y++ L V A + + G
Sbjct: 280 LLVRKFVSLLLS----VYIYKNVLSVTAYLGTITVFLGAG 315
>sp|Q5LWJ6|DNAK_RUEPO Chaperone protein DnaK OS=Ruegeria pomeroyi (strain ATCC 700808 /
DSM 15171 / DSS-3) GN=dnaK PE=3 SV=1
Length = 637
Score = 31.6 bits (70), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 6/65 (9%)
Query: 91 TLRAHGVPEHLIAKLIMINPSSLIKRRDLFKTMMD----VIKKIGIEPTNFMFILAVRSM 146
++ A+G P HL+ KL SL+ DL K MD +K GI P++ ++ V M
Sbjct: 281 SMGANGQPLHLVMKLTRAKLESLVG--DLIKKSMDPCKAALKDAGISPSDVDEVVLVGGM 338
Query: 147 SVLSK 151
+ + K
Sbjct: 339 TRMPK 343
>sp|P89678|RDRP_TOBSV RNA-directed RNA polymerase 2a OS=Tobacco streak virus (strain WC)
GN=ORF2a PE=3 SV=1
Length = 800
Score = 31.2 bits (69), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 42/93 (45%), Gaps = 6/93 (6%)
Query: 31 PKFLCSNKQLLVVSLKSNIIPIFEFLKGLVQTNVNLVHAVKQSSRIINCNIEK---RLAP 87
P FLC+ +LL V ++P ++ + + Q N L+ K+ I +K RL
Sbjct: 420 PYFLCAMVRLLYVLKSKFVVPTGKYHQ-IFQMNPELLKHSKEFKEIDFSKFDKSQGRLHH 478
Query: 88 NVN--TLRAHGVPEHLIAKLIMINPSSLIKRRD 118
+V A G+PEH + + S I+ RD
Sbjct: 479 DVQFRLFLALGIPEHFVTTWFNSHEKSYIRDRD 511
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.138 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 100,716,301
Number of Sequences: 539616
Number of extensions: 3777102
Number of successful extensions: 10113
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 10109
Number of HSP's gapped (non-prelim): 21
length of query: 300
length of database: 191,569,459
effective HSP length: 117
effective length of query: 183
effective length of database: 128,434,387
effective search space: 23503492821
effective search space used: 23503492821
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 61 (28.1 bits)