Query 043018
Match_columns 300
No_of_seqs 191 out of 1141
Neff 8.3
Searched_HMMs 29240
Date Mon Mar 25 21:06:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043018.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043018hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3m66_A Mterf3, mterf domain-co 100.0 1.5E-49 5E-54 355.9 15.5 251 14-266 6-262 (270)
2 3mva_O Transcription terminati 100.0 2.7E-46 9.3E-51 345.4 15.8 251 1-261 40-341 (343)
3 4fp9_B Mterf domain-containing 100.0 1.4E-38 4.8E-43 290.6 16.6 213 13-266 46-266 (335)
4 3m66_A Mterf3, mterf domain-co 100.0 1.1E-33 3.9E-38 252.8 12.5 191 2-198 30-224 (270)
5 3mva_O Transcription terminati 100.0 1.6E-30 5.4E-35 239.9 14.1 189 13-206 19-216 (343)
6 4fp9_B Mterf domain-containing 99.9 2.9E-23 1E-27 189.4 13.3 156 1-202 70-227 (335)
7 4fzv_B Mterf domain-containing 99.3 6.1E-11 2.1E-15 93.5 14.9 182 48-266 32-221 (239)
8 4fzv_B Mterf domain-containing 98.5 2.4E-06 8.4E-11 67.3 12.3 148 13-202 33-182 (239)
9 3ff5_A PEX14P, peroxisomal bio 87.9 1.2 4.1E-05 28.7 5.1 35 70-108 19-53 (54)
10 4ae4_A Ubiquitin-associated pr 87.6 1.8 6E-05 32.8 6.9 99 86-201 9-116 (118)
11 3ff5_A PEX14P, peroxisomal bio 87.2 1.1 3.8E-05 28.9 4.6 26 153-178 29-54 (54)
12 2w84_A Peroxisomal membrane pr 80.5 2 7E-05 29.1 3.9 36 70-109 24-59 (70)
13 2w84_A Peroxisomal membrane pr 75.4 3.1 0.00011 28.2 3.6 26 153-178 34-59 (70)
14 2ooa_A E3 ubiquitin-protein li 68.1 4.6 0.00016 25.6 2.9 25 152-176 9-33 (52)
15 1ify_A HHR23A, UV excision rep 67.2 8.1 0.00028 24.0 4.1 39 153-198 7-45 (49)
16 4ae4_A Ubiquitin-associated pr 62.5 24 0.00082 26.4 6.6 20 15-34 10-29 (118)
17 2g3q_A Protein YBL047C; endocy 61.6 6.4 0.00022 23.6 2.7 23 155-177 5-27 (43)
18 2knz_A Ubiquilin-4; cytoplasm, 60.8 12 0.00042 23.6 4.1 41 151-198 8-49 (53)
19 1z96_A DNA-damage, UBA-domain 60.6 11 0.00037 22.0 3.6 24 155-178 5-28 (40)
20 2oo9_A E3 ubiquitin-protein li 58.7 12 0.00041 23.0 3.5 24 153-176 3-26 (46)
21 2ef8_A C.ECOT38IS, putative tr 54.8 36 0.0012 22.6 6.2 55 154-208 11-74 (84)
22 2juj_A E3 ubiquitin-protein li 54.8 15 0.00051 23.5 3.5 25 152-176 5-29 (56)
23 2cos_A Serine/threonine protei 54.4 16 0.00055 23.3 3.7 40 88-133 12-51 (54)
24 1veg_A NEDD8 ultimate buster-1 54.0 12 0.0004 26.3 3.3 40 155-201 30-69 (83)
25 1wji_A Tudor domain containing 52.7 14 0.00049 24.3 3.5 38 155-199 10-47 (63)
26 2d9s_A CBL E3 ubiquitin protei 51.9 13 0.00046 23.6 3.0 23 154-176 9-31 (53)
27 2knz_A Ubiquilin-4; cytoplasm, 51.8 33 0.0011 21.5 5.0 25 82-106 8-33 (53)
28 1vg5_A RSGI RUH-014, rhomboid 50.7 11 0.00039 25.7 2.8 39 153-198 28-66 (73)
29 1uxc_A FRUR (1-57), fructose r 49.2 31 0.0011 22.6 4.8 45 92-136 7-51 (65)
30 2jy5_A Ubiquilin-1; UBA, alter 46.4 15 0.00052 23.1 2.7 25 152-176 10-35 (52)
31 1oqy_A HHR23A, UV excision rep 45.8 18 0.00063 32.7 4.2 39 12-58 167-205 (368)
32 3dfg_A Xcrecx, regulatory prot 42.2 1.2E+02 0.0041 23.6 10.7 136 16-179 23-160 (162)
33 3idw_A Actin cytoskeleton-regu 42.2 25 0.00085 23.9 3.3 18 90-107 42-59 (72)
34 2ekk_A UBA domain from E3 ubiq 42.1 16 0.00055 22.3 2.3 35 155-197 10-44 (47)
35 2dak_A Ubiquitin carboxyl-term 41.9 21 0.00073 23.3 3.0 39 155-200 10-48 (63)
36 1wiv_A UBP14, ubiquitin-specif 41.7 21 0.00071 24.2 3.0 37 155-198 30-66 (73)
37 1dv0_A DNA repair protein HHR2 41.3 12 0.0004 23.1 1.5 23 156-178 6-28 (47)
38 2bwb_A Ubiquitin-like protein 39.6 36 0.0012 20.7 3.6 25 151-175 4-29 (46)
39 1wgn_A UBAP1, ubiquitin associ 38.6 37 0.0013 22.3 3.6 38 155-199 20-57 (63)
40 2l8n_A Transcriptional repress 35.6 70 0.0024 21.0 4.9 42 91-135 15-56 (67)
41 1wr1_B Ubiquitin-like protein 35.4 27 0.00094 22.5 2.6 23 151-173 14-37 (58)
42 3c1d_A Protein ORAA, regulator 35.0 1.3E+02 0.0044 23.2 7.2 135 17-175 12-154 (159)
43 1wj7_A Hypothetical protein (R 34.3 43 0.0015 24.4 3.8 45 147-198 32-77 (104)
44 1q08_A Zn(II)-responsive regul 33.6 41 0.0014 23.6 3.7 23 154-176 5-27 (99)
45 1uxc_A FRUR (1-57), fructose r 32.2 98 0.0034 20.1 5.1 46 161-207 7-52 (65)
46 2ve7_C Kinetochore protein NUF 32.0 1.1E+02 0.0038 25.8 6.7 69 186-257 47-124 (250)
47 2xzm_O RPS13E; ribosome, trans 30.6 29 0.00098 27.1 2.5 48 131-178 12-59 (153)
48 2dai_A Ubadc1, ubiquitin assoc 30.2 38 0.0013 23.6 2.9 39 155-200 30-68 (83)
49 2dah_A Ubiquilin-3; UBA domain 28.7 27 0.00093 22.1 1.7 45 8-60 4-49 (54)
50 1b0n_B Protein (SINI protein); 28.0 70 0.0024 20.6 3.6 17 161-177 22-38 (57)
51 2cp8_A NEXT to BRCA1 gene 1 pr 27.7 1.1E+02 0.0038 19.4 4.4 17 118-134 7-23 (54)
52 2dna_A Unnamed protein product 27.3 37 0.0013 22.7 2.2 18 152-169 17-34 (67)
53 3j20_Q 30S ribosomal protein S 26.6 33 0.0011 27.0 2.2 48 131-178 10-57 (158)
54 2xzm_O RPS13E; ribosome, trans 26.6 70 0.0024 25.0 4.0 34 73-107 24-57 (153)
55 2dag_A Ubiquitin carboxyl-term 26.2 50 0.0017 22.3 2.8 41 155-201 10-50 (74)
56 3u5c_N S27A, YS15, 40S ribosom 26.1 36 0.0012 26.5 2.3 48 131-178 10-57 (151)
57 3k9o_A Ubiquitin-conjugating e 25.8 63 0.0022 26.3 4.0 27 152-178 161-187 (201)
58 3d5l_A Regulatory protein RECX 25.7 2.7E+02 0.0094 22.7 8.5 24 154-177 182-205 (221)
59 2cpw_A CBL-interacting protein 25.4 50 0.0017 21.6 2.7 37 156-198 21-57 (64)
60 1wlq_C CDT1 protein; coiled-co 24.6 1E+02 0.0035 25.2 4.9 67 48-117 31-97 (201)
61 3ayh_A DNA-directed RNA polyme 24.4 75 0.0026 24.2 3.9 45 66-111 59-103 (136)
62 1ixs_A Holliday junction DNA h 24.4 87 0.003 20.3 3.7 26 153-178 16-41 (62)
63 1vej_A Riken cDNA 4931431F19; 24.0 41 0.0014 22.9 2.1 39 152-197 27-66 (74)
64 2dkl_A Trinucleotide repeat co 23.1 65 0.0022 22.5 3.0 37 155-198 22-58 (85)
65 2vz4_A Tipal, HTH-type transcr 22.6 1.1E+02 0.0038 21.8 4.4 23 155-177 48-70 (108)
66 4gfj_A Topoisomerase V; helix- 22.6 2.8E+02 0.0095 25.7 7.7 54 48-106 462-516 (685)
67 3t76_A VANU, transcriptional r 21.9 1.2E+02 0.0042 20.8 4.4 39 163-209 46-84 (88)
68 1whc_A RSGI RUH-027, UBA/UBX 3 21.9 78 0.0027 20.6 3.1 39 157-201 12-50 (64)
69 2jml_A DNA binding domain/tran 21.6 64 0.0022 21.7 2.8 25 155-179 53-78 (81)
70 3g5g_A Regulatory protein; tra 21.2 2E+02 0.0068 20.0 5.5 24 153-176 28-52 (99)
71 1g6u_A Domain swapped dimer; d 21.1 1.4E+02 0.0047 17.6 3.9 22 153-174 4-25 (48)
72 1y7y_A C.AHDI; helix-turn-heli 20.8 1.7E+02 0.0056 18.4 5.5 24 153-176 13-37 (74)
73 3b7h_A Prophage LP1 protein 11 20.7 1.2E+02 0.0042 19.3 4.1 16 196-211 56-71 (78)
74 1vke_A Carboxymuconolactone de 20.3 2.7E+02 0.0094 20.7 6.5 28 150-177 71-98 (133)
75 3u5c_N S27A, YS15, 40S ribosom 20.3 76 0.0026 24.7 3.1 34 73-107 22-55 (151)
76 1vek_A UBP14, ubiquitin-specif 20.2 80 0.0028 21.9 3.0 40 155-200 30-69 (84)
77 3ulq_B Transcriptional regulat 20.2 2E+02 0.0068 19.7 5.2 35 162-203 41-75 (90)
No 1
>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A
Probab=100.00 E-value=1.5e-49 Score=355.91 Aligned_cols=251 Identities=15% Similarity=0.229 Sum_probs=233.3
Q ss_pred hHHHHHHHhCCCCCCchhHHHhhcCccccccccCcchhhhhHhhhhccCChhHHHHHHhCCcccccchhhhhhhHHHHHH
Q 043018 14 RPKIDYFESVGISGADLPKFLCSNKQLLVVSLKSNIIPIFEFLKGLVQTNVNLVHAVKQSSRIINCNIEKRLAPNVNTLR 93 (300)
Q Consensus 14 ~~~l~~L~~lG~s~~~i~~ii~~~P~lL~~s~e~~l~p~v~fL~~~g~~~~~v~~il~~~P~iL~~s~e~~l~~~v~~L~ 93 (300)
.++++||.++|++.++|.+....+|.+|++++++++.|+++||.++|++++++++++.++|.+|++++++ ++|+++||+
T Consensus 6 s~~l~~L~~lGv~~~~i~k~p~~~p~lL~~~~~~~l~~~l~fL~~lG~~~~~i~~il~~~P~lL~~~~e~-l~p~v~~L~ 84 (270)
T 3m66_A 6 SETLQKLVLLGVDLSKIEKHPEAANLLLRLDFEKDIKQMLLFLKDVGIEDNQLGAFLTKNHAIFSEDLEN-LKTRVAYLH 84 (270)
T ss_dssp HHHHHHHHHTTCCHHHHTTSHHHHHHHHTCCHHHHTHHHHHHHHHHTCCGGGHHHHHHHCTTGGGSCHHH-HHHHHHHHH
T ss_pred hHHHHHHHHcCCCHHHHhhccchhhhhhccChhhhHHHHHHHHHHcCCCHHHHHHHHHhCChhhhCCHHH-HHHHHHHHH
Confidence 5899999999999999988888888889999999999999999999999999999999999999999998 999999999
Q ss_pred hcCCChHHHHHHhhhCCcceeechhhHHHHHHHH-HHhCCCCCChh-HHHHHHHHhhccHHHHHHHHHHH-HhCCCCHHH
Q 043018 94 AHGVPEHLIAKLIMINPSSLIKRRDLFKTMMDVI-KKIGIEPTNFM-FILAVRSMSVLSKATWEKKKDAL-MSFSWSEDE 170 (300)
Q Consensus 94 ~lGl~~~~i~~ll~~~P~ll~~~~~~l~~~v~~L-~~lG~~~~~~~-~~~~~~~l~~~~~~~l~~kv~~l-~~lG~s~~~ 170 (300)
++|++.++|.+++.++|++|+.+.++++++++|| +++|++.++.. .+...|.+++.+.++++++++++ +++||+.+|
T Consensus 85 ~~Gls~~~i~~~l~~~P~lL~~s~~~l~~~v~~L~~~lG~~~~~i~~ll~~~P~il~~s~e~~~~~v~~l~~~~G~s~~e 164 (270)
T 3m66_A 85 SKNFSKADVAQMVRKAPFLLNFSVERLDNRLGFFQKELELSVKKTRDLVVRLPRLLTGSLEPVKENMKVYRLELGFKHNE 164 (270)
T ss_dssp HTTCCHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHCCCHHHHHHHHHHSGGGGTSCSHHHHHHHHHHHHTSCCCHHH
T ss_pred HcCCCHHHHHHHHHhCCHHHcCCHHHHHHHHHHHHHHhCCCHHHHHHHHHhCCcceeechHHHHHHHHHHHHHcCCCHHH
Confidence 9999999999999999999999999999999999 58999987643 33334555677888999999987 599999999
Q ss_pred HHHHHHcCCcccccchhhHHHHHHHHHHHhCCChhhhhhCCcccccCccccchhhHHHHHHHHHCCCCcCC---CCchhh
Q 043018 171 FYLAFKRQPMLMLSSTKKIRELMDFFVNEIGLKPLDIVRCPNLLLISLKKRVLPRWSVLQVLMSKNLLKKD---IDFIQA 247 (300)
Q Consensus 171 i~~m~~~~P~iL~~S~~~l~~ki~fl~~~~g~~~~~i~~~P~ll~~sle~ri~pR~~~l~~L~~~Gl~~~~---~~l~~~ 247 (300)
|..|+.++|+++++|.++|++|++|+.++||++.++|+++|++|+||+| ||+|||.++++|.++|+.+++ +++.++
T Consensus 165 i~~~v~~~P~il~~s~~~l~~k~~fL~~~mg~~~~~i~~~P~~l~~Sle-ri~pR~~~l~~L~~~g~~~~~~~~~~L~~~ 243 (270)
T 3m66_A 165 IQHMITRIPKMLTANKMKLTETFDFVHNVMSIPHHIIVKFPQVFNTRLF-KVKERHLFLTYLGRAQYDPAKPNYISLDKL 243 (270)
T ss_dssp HHHHHHHCGGGGTSCHHHHHHHHHHHHTTSCCCHHHHHHCGGGGGSCHH-HHHHHHHHHHHHTCCCCCTTSSSCCCHHHH
T ss_pred HHHHHHhCChhheecHHHHHHHHHHHHHHhCCCHHHHHhCchHhhCCHH-HHHHHHHHHHHhhccCCCCCCCCCCCHHHH
Confidence 9999999999999999999999999999999999999999999999999 999999999999999998654 677789
Q ss_pred cccChhhHHHHhcccCcCh
Q 043018 248 LIVTKPVFERRFVTSYMDD 266 (300)
Q Consensus 248 l~~s~~~F~~~~v~~~~~~ 266 (300)
+.+||++|+++|++.++|+
T Consensus 244 l~~sd~~F~~~~~~~~~ee 262 (270)
T 3m66_A 244 VSIPDEIFCEEIAKASVQD 262 (270)
T ss_dssp HHSCHHHHHHHTTCSCHHH
T ss_pred hcCCHHHHHHHHhcCCHHH
Confidence 9999999999999999976
No 2
>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A*
Probab=100.00 E-value=2.7e-46 Score=345.44 Aligned_cols=251 Identities=16% Similarity=0.245 Sum_probs=207.0
Q ss_pred CCCceecCcCCChhHHHHHHHhCCCCCCchhHHHhhcCccccccccCcchhhhhHhhhhccCChhHHHHHHhCCc-cccc
Q 043018 1 NPTLLLADPEKSLRPKIDYFESVGISGADLPKFLCSNKQLLVVSLKSNIIPIFEFLKGLVQTNVNLVHAVKQSSR-IINC 79 (300)
Q Consensus 1 ~P~lL~~~~~~~l~~~l~~L~~lG~s~~~i~~ii~~~P~lL~~s~e~~l~p~v~fL~~~g~~~~~v~~il~~~P~-iL~~ 79 (300)
+|+++..+++ +..++++||+++|++++||++++.++|.+|+++.+ ++.|+++||+++|+++++++++|.++|+ ++++
T Consensus 40 ~p~l~~~s~~-~~~~vl~fL~~~G~s~~~i~~iv~~~P~lL~~~~~-~l~p~l~fL~~lG~s~~~i~~il~~~P~iLl~s 117 (343)
T 3mva_O 40 QPGVFHRMIT-NEQDLKMFLLSKGASKEVIASIISRYPRAITRTPE-NLSKRWDLWRKIVTSDLEIVNILERSPESFFRS 117 (343)
T ss_dssp CGGGGGCSCC-CHHHHHHHHHHTTCCHHHHHHHHHHCGGGGGCCHH-HHHHHHHHHTTTSSCHHHHHHHHHHCSHHHHSC
T ss_pred CchhhccCcc-cHHHHHHHHHHcCCCHHHHHHHHHhCcHHHhCCHH-HHHHHHHHHHHcCCCHHHHHHHHHHCCHHHhCC
Confidence 4788888886 58999999999999999999999999999998854 8999999999999999999999999999 5555
Q ss_pred chhhhhhhHHHHHHhcCCChHHHHHHhhhCCcceeechhhHHHHHHHHHHhCCCCCC---h----hHHHHHHHH------
Q 043018 80 NIEKRLAPNVNTLRAHGVPEHLIAKLIMINPSSLIKRRDLFKTMMDVIKKIGIEPTN---F----MFILAVRSM------ 146 (300)
Q Consensus 80 s~e~~l~~~v~~L~~lGl~~~~i~~ll~~~P~ll~~~~~~l~~~v~~L~~lG~~~~~---~----~~~~~~~~l------ 146 (300)
+.+++++|+++||+++|++.++|++++.++|++|+.+.+++++++++++++|++.+. . .++...|.+
T Consensus 118 ~~~~~l~p~v~fL~~lGl~~~~i~~ll~~~P~il~~~~e~~~~~v~~L~~lgv~~g~~~p~~~I~~il~~~P~iL~~s~~ 197 (343)
T 3mva_O 118 NNNLNLENNIKFLYSVGLTRKCLCRLLTNAPRTFSNSLDLNKQMVEFLQAAGLSLGHNDPADFVRKIIFKNPFILIQSTK 197 (343)
T ss_dssp CCHHHHHHHHHHHHHTTCCHHHHHHHHHHCGGGGTSCHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHCGGGGGSCHH
T ss_pred ChHhhHHHHHHHHHHhCCCHHHHHHHHHhCChhheeCHHHhhHHHHHHHHhCCCcCCCcHHHHHHHHHHhCChHhcCCHH
Confidence 544579999999999999999999999999999999888778888888877764221 0 111111112
Q ss_pred -------------------------------hhccHHHHHHHHHHHH----hCCCCHHHHHHHHHcCCcccccchhhHHH
Q 043018 147 -------------------------------SVLSKATWEKKKDALM----SFSWSEDEFYLAFKRQPMLMLSSTKKIRE 191 (300)
Q Consensus 147 -------------------------------~~~~~~~l~~kv~~l~----~lG~s~~~i~~m~~~~P~iL~~S~~~l~~ 191 (300)
...+.+.|+++++++. ++||+.+|+..|+.++|+++++|.++|++
T Consensus 198 ~i~~~v~fL~~~~G~~~~~~~~~i~~~~~~~l~~s~~~l~~~~~~l~e~~~~lG~s~~ev~~~v~~~P~il~~s~~~l~~ 277 (343)
T 3mva_O 198 RVKANIEFLRSTFNLNSEELLVLICGPGAEILDLSNDYARRSYANIKEKLFSLGCTEEEVQKFVLSYPDVIFLAEKKFND 277 (343)
T ss_dssp HHHHHHHHHHHHSCCCHHHHHHHHHTTTGGGGGCCTTHHHHHHHHHHHHHHTTTCCHHHHHHHHHTCGGGGGSCHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHhcCChHHhhccHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhCCchhcccHHHHHH
Confidence 2233344555554443 58999999999999999999999999999
Q ss_pred HHHHHHHHhCCChhhhhhCCcccccCccccchhhHHHHHHHHHCCCCcCCCCch--hhcccChhhHHHHhcc
Q 043018 192 LMDFFVNEIGLKPLDIVRCPNLLLISLKKRVLPRWSVLQVLMSKNLLKKDIDFI--QALIVTKPVFERRFVT 261 (300)
Q Consensus 192 ki~fl~~~~g~~~~~i~~~P~ll~~sle~ri~pR~~~l~~L~~~Gl~~~~~~l~--~~l~~s~~~F~~~~v~ 261 (300)
|++||.+ ||++.++|+++|++|+||+| ||+|||. +|.+.|+ ++++. ++|++||++|+++|.+
T Consensus 278 k~~fl~~-mg~~~~~i~~~P~~l~~sle-ri~~R~~---~L~~~g~---~~~~~~~~~l~~s~~~F~~~~~~ 341 (343)
T 3mva_O 278 KIDCLME-ENISISQIIENPRVLDSSIS-TLKSRIK---ELVNAGC---NLSTLNITLLSWSKKRYEAKLKK 341 (343)
T ss_dssp HHHHHHT-TTCCHHHHHHSGGGGGSCHH-HHHHHHH---HHHTTTC---CSSSSCGGGGGSCHHHHHHHHHH
T ss_pred HHHHHHH-cCCCHHHHHhCCHHHhcCHH-HHHHHHH---HHHHCCC---CCCCCcchhhcCCHHHHHHHHhc
Confidence 9999999 99999999999999999999 9999995 5569998 45555 8999999999999864
No 3
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=100.00 E-value=1.4e-38 Score=290.61 Aligned_cols=213 Identities=15% Similarity=0.199 Sum_probs=184.6
Q ss_pred hhHHHHHHHhCCCCCCchhHHHhhcCccccccccCcchhhhhHhhhhccCChhHHHHHHhCCcccccchhhhhhhHHHHH
Q 043018 13 LRPKIDYFESVGISGADLPKFLCSNKQLLVVSLKSNIIPIFEFLKGLVQTNVNLVHAVKQSSRIINCNIEKRLAPNVNTL 92 (300)
Q Consensus 13 l~~~l~~L~~lG~s~~~i~~ii~~~P~lL~~s~e~~l~p~v~fL~~~g~~~~~v~~il~~~P~iL~~s~e~~l~~~v~~L 92 (300)
++..+.+|.++|++.++|+++++++|.++.. ++.+++.||.++|+++++|.++|.++|++|++++++ ++++++||
T Consensus 46 ~e~~l~~L~d~Gfs~~~i~~il~~~P~il~~----~l~~~i~~L~~LGls~e~V~kiL~k~P~lL~~s~e~-L~~~l~fL 120 (335)
T 4fp9_B 46 LERVMSSLLDMGFSNAHINELLSVRRGASLQ----QLLDIISEFILLGLNPEPVCVVLKKSPQLLKLPIMQ-MRKRSSYL 120 (335)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHCSSCCHH----HHHHHHHHHHHTTCCHHHHHHHHHHCGGGGGSCHHH-HHHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHhCcccchh----HHHHHHHHHHHcCCCHHHHHHHHHhChhhccCCHHH-HHHHHHHH
Confidence 6677888999999999999999999988754 577889999999999999999999999999999864 99999999
Q ss_pred HhcCCChHHHHHHhhhCCcceeechhhHHHHHHHHHHhCCCCCChhHHHHHHHHhhccHHHHHHHHHHHH-hCCCCHHHH
Q 043018 93 RAHGVPEHLIAKLIMINPSSLIKRRDLFKTMMDVIKKIGIEPTNFMFILAVRSMSVLSKATWEKKKDALM-SFSWSEDEF 171 (300)
Q Consensus 93 ~~lGl~~~~i~~ll~~~P~ll~~~~~~l~~~v~~L~~lG~~~~~~~~~~~~~~l~~~~~~~l~~kv~~l~-~lG~s~~~i 171 (300)
+++|++..+|.+++.++|++|+.+. +.+..++.+|. ++||+.+||
T Consensus 121 ~~lGl~~~~i~~ll~~~P~lL~~s~----------------------------------e~i~~~v~~L~~~lGfS~~ev 166 (335)
T 4fp9_B 121 QKLGLGEGKLKRVLYCCPEIFTMRQ----------------------------------QDINDTVRLLKEKCLFTVQQV 166 (335)
T ss_dssp HHTTCTTTTHHHHHHHCGGGGTSCH----------------------------------HHHHHHHHHHHHTSCCCHHHH
T ss_pred HHcCCCHHHHHHHHHhCchhhccCh----------------------------------HHHHHHHHHHHHHcCCCHHHH
Confidence 9999999999999999998886644 45566667775 899999999
Q ss_pred HHHHHcCCcccccchhhHHHHHHHHHHHhCCChhhhhhCCcccccCccccchhhHHHHHHHHHCCC-------CcCCCCc
Q 043018 172 YLAFKRQPMLMLSSTKKIRELMDFFVNEIGLKPLDIVRCPNLLLISLKKRVLPRWSVLQVLMSKNL-------LKKDIDF 244 (300)
Q Consensus 172 ~~m~~~~P~iL~~S~~~l~~ki~fl~~~~g~~~~~i~~~P~ll~~sle~ri~pR~~~l~~L~~~Gl-------~~~~~~l 244 (300)
..|+.++|+||++|.++|++|++||+++||+++++|++ |++|+||++ ||+|||.+++.|..... ...++++
T Consensus 167 ~~mv~r~P~lL~~S~e~L~~K~efLv~~Mgl~~~eIvk-P~~l~ySLe-RIkpRH~fL~~lG~~q~~~~k~~~~~~npsL 244 (335)
T 4fp9_B 167 TKILHSCPSVLREDLGQLEYKFQYAYFRMGIKHPDIVK-SEYLQYSLT-KIKQRHIYLERLGRYQTPDKKGQTQIPNPLL 244 (335)
T ss_dssp HHHHHHCGGGGTSCHHHHHHHHHHHHTTTCCCHHHHHH-TTGGGSCHH-HHHHHHHHHHHHTSCCCCCSSSCCSSCCCCH
T ss_pred HHHHHhCChhhhCCHHHHHHHHHHHHHHhCCCHHHccc-cchhhccHH-HHHHHHHHHHHcCCccCCCcccccCCCCccH
Confidence 99999999999999999999999999999999999998 999999998 99999998885533211 1235679
Q ss_pred hhhcccChhhHHHHhcccCcCh
Q 043018 245 IQALIVTKPVFERRFVTSYMDD 266 (300)
Q Consensus 245 ~~~l~~s~~~F~~~~v~~~~~~ 266 (300)
.+++..|+++|+.+++..+.++
T Consensus 245 ~~il~~sd~~F~~~vA~~s~ee 266 (335)
T 4fp9_B 245 KDILRVSEAEFLARTACTSVEE 266 (335)
T ss_dssp HHHTTSCHHHHHHHTSCCCHHH
T ss_pred HHHHcCCHHHHHHHHHhcCHHH
Confidence 9999999999999999998877
No 4
>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A
Probab=100.00 E-value=1.1e-33 Score=252.81 Aligned_cols=191 Identities=18% Similarity=0.270 Sum_probs=176.1
Q ss_pred CCceecCcCCChhHHHHHHHhCCCCCCchhHHHhhcCccccccccCcchhhhhHhhhhccCChhHHHHHHhCCcccccch
Q 043018 2 PTLLLADPEKSLRPKIDYFESVGISGADLPKFLCSNKQLLVVSLKSNIIPIFEFLKGLVQTNVNLVHAVKQSSRIINCNI 81 (300)
Q Consensus 2 P~lL~~~~~~~l~~~l~~L~~lG~s~~~i~~ii~~~P~lL~~s~e~~l~p~v~fL~~~g~~~~~v~~il~~~P~iL~~s~ 81 (300)
|.+|++++++++.|+++||.++|++.++|+++++++|.+|++++++ +.|+++||+++|++++++++++.++|++|++++
T Consensus 30 p~lL~~~~~~~l~~~l~fL~~lG~~~~~i~~il~~~P~lL~~~~e~-l~p~v~~L~~~Gls~~~i~~~l~~~P~lL~~s~ 108 (270)
T 3m66_A 30 NLLLRLDFEKDIKQMLLFLKDVGIEDNQLGAFLTKNHAIFSEDLEN-LKTRVAYLHSKNFSKADVAQMVRKAPFLLNFSV 108 (270)
T ss_dssp HHHHTCCHHHHTHHHHHHHHHHTCCGGGHHHHHHHCTTGGGSCHHH-HHHHHHHHHHTTCCHHHHHHHHHHSTTGGGSCH
T ss_pred hhhhccChhhhHHHHHHHHHHcCCCHHHHHHHHHhCChhhhCCHHH-HHHHHHHHHHcCCCHHHHHHHHHhCCHHHcCCH
Confidence 5669999999999999999999999999999999999999999996 999999999999999999999999999999999
Q ss_pred hhhhhhHHHHH-HhcCCChHHHHHHhhhCCcceeechhhHHHHHHHH-HHhCCCCCChh-HHHHHHHHhhccHHHHHHHH
Q 043018 82 EKRLAPNVNTL-RAHGVPEHLIAKLIMINPSSLIKRRDLFKTMMDVI-KKIGIEPTNFM-FILAVRSMSVLSKATWEKKK 158 (300)
Q Consensus 82 e~~l~~~v~~L-~~lGl~~~~i~~ll~~~P~ll~~~~~~l~~~v~~L-~~lG~~~~~~~-~~~~~~~l~~~~~~~l~~kv 158 (300)
++ ++|+++|| +++|++.+++.+++.++|++++.+.++++++++++ +++|++.++.. ++...|.+...+.+++++++
T Consensus 109 ~~-l~~~v~~L~~~lG~~~~~i~~ll~~~P~il~~s~e~~~~~v~~l~~~~G~s~~ei~~~v~~~P~il~~s~~~l~~k~ 187 (270)
T 3m66_A 109 ER-LDNRLGFFQKELELSVKKTRDLVVRLPRLLTGSLEPVKENMKVYRLELGFKHNEIQHMITRIPKMLTANKMKLTETF 187 (270)
T ss_dssp HH-HHHHHHHHHHHHCCCHHHHHHHHHHSGGGGTSCSHHHHHHHHHHHHTSCCCHHHHHHHHHHCGGGGTSCHHHHHHHH
T ss_pred HH-HHHHHHHHHHHhCCCHHHHHHHHHhCCcceeechHHHHHHHHHHHHHcCCCHHHHHHHHHhCChhheecHHHHHHHH
Confidence 85 99999999 58999999999999999999999999999999976 78999987642 33444455677889999999
Q ss_pred HHHH-hCCCCHHHHHHHHHcCCcccccchhhHHHHHHHHHH
Q 043018 159 DALM-SFSWSEDEFYLAFKRQPMLMLSSTKKIRELMDFFVN 198 (300)
Q Consensus 159 ~~l~-~lG~s~~~i~~m~~~~P~iL~~S~~~l~~ki~fl~~ 198 (300)
+|+. ++|++.++|. ++|++|++|.++|++++.|+..
T Consensus 188 ~fL~~~mg~~~~~i~----~~P~~l~~Sleri~pR~~~l~~ 224 (270)
T 3m66_A 188 DFVHNVMSIPHHIIV----KFPQVFNTRLFKVKERHLFLTY 224 (270)
T ss_dssp HHHHTTSCCCHHHHH----HCGGGGGSCHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHH----hCchHhhCCHHHHHHHHHHHHH
Confidence 9997 7999999876 9999999999999999999976
No 5
>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A*
Probab=99.97 E-value=1.6e-30 Score=239.93 Aligned_cols=189 Identities=12% Similarity=0.147 Sum_probs=153.2
Q ss_pred hhHHHHHHHhCCCCCCchhHHHhhcCccccccccCcchhhhhHhhhhccCChhHHHHHHhCCcccccchhhhhhhHHHHH
Q 043018 13 LRPKIDYFESVGISGADLPKFLCSNKQLLVVSLKSNIIPIFEFLKGLVQTNVNLVHAVKQSSRIINCNIEKRLAPNVNTL 92 (300)
Q Consensus 13 l~~~l~~L~~lG~s~~~i~~ii~~~P~lL~~s~e~~l~p~v~fL~~~g~~~~~v~~il~~~P~iL~~s~e~~l~~~v~~L 92 (300)
-..+++||.++|++ +.+++.++|.++..+.+ +..+.++||+++|++++++++++.++|.+|+++++ ++.|+++||
T Consensus 19 ~~~~v~~L~s~Gl~---~~~~~~~~p~l~~~s~~-~~~~vl~fL~~~G~s~~~i~~iv~~~P~lL~~~~~-~l~p~l~fL 93 (343)
T 3mva_O 19 NEDLLKNLLTMGVD---IDMARKRQPGVFHRMIT-NEQDLKMFLLSKGASKEVIASIISRYPRAITRTPE-NLSKRWDLW 93 (343)
T ss_dssp -CCHHHHHHHHTCC---HHHHHHHCGGGGGCSCC-CHHHHHHHHHHTTCCHHHHHHHHHHCGGGGGCCHH-HHHHHHHHH
T ss_pred cHHHHHHHHHcCCC---HHHHHHhCchhhccCcc-cHHHHHHHHHHcCCCHHHHHHHHHhCcHHHhCCHH-HHHHHHHHH
Confidence 36789999999998 66778899999998876 78999999999999999999999999999999975 699999999
Q ss_pred HhcCCChHHHHHHhhhCCc-ceeechh-hHHHHHHHHHHhCCCCCChh-HHHHHHHHhhccHHHHHHHHHHHHhCCCC--
Q 043018 93 RAHGVPEHLIAKLIMINPS-SLIKRRD-LFKTMMDVIKKIGIEPTNFM-FILAVRSMSVLSKATWEKKKDALMSFSWS-- 167 (300)
Q Consensus 93 ~~lGl~~~~i~~ll~~~P~-ll~~~~~-~l~~~v~~L~~lG~~~~~~~-~~~~~~~l~~~~~~~l~~kv~~l~~lG~s-- 167 (300)
+++|++.+++.+++.++|+ +++...+ +++++++||+++|++.+... ++...|.+.+.+.+..++++++++++|++
T Consensus 94 ~~lG~s~~~i~~il~~~P~iLl~s~~~~~l~p~v~fL~~lGl~~~~i~~ll~~~P~il~~~~e~~~~~v~~L~~lgv~~g 173 (343)
T 3mva_O 94 RKIVTSDLEIVNILERSPESFFRSNNNLNLENNIKFLYSVGLTRKCLCRLLTNAPRTFSNSLDLNKQMVEFLQAAGLSLG 173 (343)
T ss_dssp TTTSSCHHHHHHHHHHCSHHHHSCCCHHHHHHHHHHHHHTTCCHHHHHHHHHHCGGGGTSCHHHHHHHHHHHHHHHHHTT
T ss_pred HHcCCCHHHHHHHHHHCCHHHhCCChHhhHHHHHHHHHHhCCCHHHHHHHHHhCChhheeCHHHhhHHHHHHHHhCCCcC
Confidence 9999999999999999999 5666654 89999999999999987542 22223334455666668888888755443
Q ss_pred ----HHHHHHHHHcCCcccccchhhHHHHHHHHHHHhCCChhh
Q 043018 168 ----EDEFYLAFKRQPMLMLSSTKKIRELMDFFVNEIGLKPLD 206 (300)
Q Consensus 168 ----~~~i~~m~~~~P~iL~~S~~~l~~ki~fl~~~~g~~~~~ 206 (300)
.+.|.+++.++|.++++|.++++++++|+.+++|++.++
T Consensus 174 ~~~p~~~I~~il~~~P~iL~~s~~~i~~~v~fL~~~~G~~~~~ 216 (343)
T 3mva_O 174 HNDPADFVRKIIFKNPFILIQSTKRVKANIEFLRSTFNLNSEE 216 (343)
T ss_dssp CSCHHHHHHHHHHHCGGGGGSCHHHHHHHHHHHHHHSCCCHHH
T ss_pred CCcHHHHHHHHHHhCChHhcCCHHHHHHHHHHHHHHcCCCHHH
Confidence 667888888888888888667888888877645555444
No 6
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=99.89 E-value=2.9e-23 Score=189.42 Aligned_cols=156 Identities=16% Similarity=0.157 Sum_probs=141.1
Q ss_pred CCCceecCcCCChhHHHHHHHhCCCCCCchhHHHhhcCccccccccCcchhhhhHhhhhccCChhHHHHHHhCCcccccc
Q 043018 1 NPTLLLADPEKSLRPKIDYFESVGISGADLPKFLCSNKQLLVVSLKSNIIPIFEFLKGLVQTNVNLVHAVKQSSRIINCN 80 (300)
Q Consensus 1 ~P~lL~~~~~~~l~~~l~~L~~lG~s~~~i~~ii~~~P~lL~~s~e~~l~p~v~fL~~~g~~~~~v~~il~~~P~iL~~s 80 (300)
+|.++. .++.+++.||.++|++.++|++||.++|++|+.+++ +|.|+++||+++|++..++.+++.++|++|+++
T Consensus 70 ~P~il~----~~l~~~i~~L~~LGls~e~V~kiL~k~P~lL~~s~e-~L~~~l~fL~~lGl~~~~i~~ll~~~P~lL~~s 144 (335)
T 4fp9_B 70 RRGASL----QQLLDIISEFILLGLNPEPVCVVLKKSPQLLKLPIM-QMRKRSSYLQKLGLGEGKLKRVLYCCPEIFTMR 144 (335)
T ss_dssp CSSCCH----HHHHHHHHHHHHTTCCHHHHHHHHHHCGGGGGSCHH-HHHHHHHHHHHTTCTTTTHHHHHHHCGGGGTSC
T ss_pred Ccccch----hHHHHHHHHHHHcCCCHHHHHHHHHhChhhccCCHH-HHHHHHHHHHHcCCCHHHHHHHHHhCchhhccC
Confidence 466653 358899999999999999999999999999999997 799999999999999999999999999999999
Q ss_pred hhhhhhhHHHHHH-hcCCChHHHHHHhhhCCcceeechhhHHHHHHHHHHhCCCCCChhHHHHHHHHhhccHHHHHHHHH
Q 043018 81 IEKRLAPNVNTLR-AHGVPEHLIAKLIMINPSSLIKRRDLFKTMMDVIKKIGIEPTNFMFILAVRSMSVLSKATWEKKKD 159 (300)
Q Consensus 81 ~e~~l~~~v~~L~-~lGl~~~~i~~ll~~~P~ll~~~~~~l~~~v~~L~~lG~~~~~~~~~~~~~~l~~~~~~~l~~kv~ 159 (300)
.++ +..++.+|. ++|++.++|.+++.++|++|+. +.+++++|++
T Consensus 145 ~e~-i~~~v~~L~~~lGfS~~ev~~mv~r~P~lL~~----------------------------------S~e~L~~K~e 189 (335)
T 4fp9_B 145 QQD-INDTVRLLKEKCLFTVQQVTKILHSCPSVLRE----------------------------------DLGQLEYKFQ 189 (335)
T ss_dssp HHH-HHHHHHHHHHTSCCCHHHHHHHHHHCGGGGTS----------------------------------CHHHHHHHHH
T ss_pred hHH-HHHHHHHHHHHcCCCHHHHHHHHHhCChhhhC----------------------------------CHHHHHHHHH
Confidence 885 888989885 7999999999999999998855 4567888899
Q ss_pred HHH-hCCCCHHHHHHHHHcCCcccccchhhHHHHHHHHHHHhCC
Q 043018 160 ALM-SFSWSEDEFYLAFKRQPMLMLSSTKKIRELMDFFVNEIGL 202 (300)
Q Consensus 160 ~l~-~lG~s~~~i~~m~~~~P~iL~~S~~~l~~ki~fl~~~~g~ 202 (300)
||. ++|++.++|. + |++|+||.+.|++++.||.. .|.
T Consensus 190 fLv~~Mgl~~~eIv----k-P~~l~ySLeRIkpRH~fL~~-lG~ 227 (335)
T 4fp9_B 190 YAYFRMGIKHPDIV----K-SEYLQYSLTKIKQRHIYLER-LGR 227 (335)
T ss_dssp HHHTTTCCCHHHHH----H-TTGGGSCHHHHHHHHHHHHH-HTS
T ss_pred HHHHHhCCCHHHcc----c-cchhhccHHHHHHHHHHHHH-cCC
Confidence 988 8999999986 3 99999999999999999977 776
No 7
>4fzv_B Mterf domain-containing protein 2; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens}
Probab=99.32 E-value=6.1e-11 Score=93.50 Aligned_cols=182 Identities=15% Similarity=0.191 Sum_probs=135.9
Q ss_pred cchhhhhHhhhhccCChhHHHHHHhCCcccccchhhhhhhHHHHHHhcCCChHHHHHHhhhCCcceeechhhHHHHHHHH
Q 043018 48 NIIPIFEFLKGLVQTNVNLVHAVKQSSRIINCNIEKRLAPNVNTLRAHGVPEHLIAKLIMINPSSLIKRRDLFKTMMDVI 127 (300)
Q Consensus 48 ~l~p~v~fL~~~g~~~~~v~~il~~~P~iL~~s~e~~l~~~v~~L~~lGl~~~~i~~ll~~~P~ll~~~~~~l~~~v~~L 127 (300)
++...+.-+.-+|+.++-+.-++.+.|.+|...+- .++.+-.+|+.+|+.+..+.+++..+|.++++..
T Consensus 32 qlldiisefillglnpepvcvvlkkspqllklpim-qmrkrssylqklglgegklkrvlyccpeiftmrq---------- 100 (239)
T 4fzv_B 32 QLLDIISEFILLGLNPEPVCVVLKKSPQLLKLPIM-QMRKRSSYLQKLGLGEGKLKRVLYCCPEIFTMRQ---------- 100 (239)
T ss_dssp TTTHHHHHHHHHCCCTTHHHHHHHSCGGGGTSCHH-HHHHHHHHHHHHTTCSSCCHHHHHHCGGGGTSCH----------
T ss_pred HHHHHHHHHHhhcCCCCceEEEecCCHHHhcChHH-HHHHHHHHHHHhCCCccchhhheecCcHHHHHHH----------
Confidence 34444444455666777777777777777776665 3666777777777777777777777776665543
Q ss_pred HHhCCCCCChhHHHHHHHHhhccHHHHHHHHHHHH-hCCCCHHHHHHHHHcCCcccccchhhHHHHHHHHHHHhCCChhh
Q 043018 128 KKIGIEPTNFMFILAVRSMSVLSKATWEKKKDALM-SFSWSEDEFYLAFKRQPMLMLSSTKKIRELMDFFVNEIGLKPLD 206 (300)
Q Consensus 128 ~~lG~~~~~~~~~~~~~~l~~~~~~~l~~kv~~l~-~lG~s~~~i~~m~~~~P~iL~~S~~~l~~ki~fl~~~~g~~~~~ 206 (300)
..+...+..++ ++-|+..++.+++..||.++.-....+.-|+.|-.-.||+...+
T Consensus 101 ------------------------qdindtvrllkekclftvqqvtkilhscpsvlredlgqleykfqyayfrmgikhpd 156 (239)
T 4fzv_B 101 ------------------------QDINDTVRLLKEKCLFTVQQVTKILHSCPSVLREDLGQLEYKFQYAYFRMGIKHPD 156 (239)
T ss_dssp ------------------------HHHHHHHHHHHHHSCCCHHHHHHHHHHCGGGGTSCTTHHHHHHHHHHHTSCCCHHH
T ss_pred ------------------------hhHhHHHHHHHHhHHhhHHHHHHHHHhCcHHHHHHHhhhhhhHhHHHHHccCCCcc
Confidence 34555566666 67799999999999999999999999999999988889999999
Q ss_pred hhhCCcccccCccccchhhHHHHHHHHHCCCCc-------CCCCchhhcccChhhHHHHhcccCcCh
Q 043018 207 IVRCPNLLLISLKKRVLPRWSVLQVLMSKNLLK-------KDIDFIQALIVTKPVFERRFVTSYMDD 266 (300)
Q Consensus 207 i~~~P~ll~~sle~ri~pR~~~l~~L~~~Gl~~-------~~~~l~~~l~~s~~~F~~~~v~~~~~~ 266 (300)
|++. .++.||+. .|+.||-+++-|..-+-.. .++-+.+++..|+..|+.+-.-..-|+
T Consensus 157 ivks-eylqyslt-kikqrhiylerlgryqtpdkkgqtqipnpllkdilrvseaeflartactsvee 221 (239)
T 4fzv_B 157 IVKS-EYLQYSLT-KIKQRHIYLERLGRYQTPDKKGQTQIPNPLLKDILRVSEAEFLARTACTSVEE 221 (239)
T ss_dssp HHHT-TGGGSCHH-HHHHHHHHHHHHTCCCCCCSSSCCSSCCCCHHHHHTSCHHHHHHHTSCSCHHH
T ss_pred hhHH-HHHHHHHH-HHHHHHhHHHHhcccCCCCccCCccCCChHHHHHHHHhHHHHHHHHhcccHHH
Confidence 9985 89999997 5999999988664322111 245577899999999999887665544
No 8
>4fzv_B Mterf domain-containing protein 2; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens}
Probab=98.48 E-value=2.4e-06 Score=67.33 Aligned_cols=148 Identities=16% Similarity=0.150 Sum_probs=121.9
Q ss_pred hhHHHHHHHhCCCCCCchhHHHhhcCccccccccCcchhhhhHhhhhccCChhHHHHHHhCCcccccchhhhhhhHHHHH
Q 043018 13 LRPKIDYFESVGISGADLPKFLCSNKQLLVVSLKSNIIPIFEFLKGLVQTNVNLVHAVKQSSRIINCNIEKRLAPNVNTL 92 (300)
Q Consensus 13 l~~~l~~L~~lG~s~~~i~~ii~~~P~lL~~s~e~~l~p~v~fL~~~g~~~~~v~~il~~~P~iL~~s~e~~l~~~v~~L 92 (300)
+-..+.-|--+|++++-++-++.+.|++|..++- ++..+-.||+.+|+....+.+++..+|.|+++.-. .+..++..|
T Consensus 33 lldiisefillglnpepvcvvlkkspqllklpim-qmrkrssylqklglgegklkrvlyccpeiftmrqq-dindtvrll 110 (239)
T 4fzv_B 33 LLDIISEFILLGLNPEPVCVVLKKSPQLLKLPIM-QMRKRSSYLQKLGLGEGKLKRVLYCCPEIFTMRQQ-DINDTVRLL 110 (239)
T ss_dssp TTHHHHHHHHHCCCTTHHHHHHHSCGGGGTSCHH-HHHHHHHHHHHHTTCSSCCHHHHHHCGGGGTSCHH-HHHHHHHHH
T ss_pred HHHHHHHHHhhcCCCCceEEEecCCHHHhcChHH-HHHHHHHHHHHhCCCccchhhheecCcHHHHHHHh-hHhHHHHHH
Confidence 4444555566899999999999999999998875 78888999999999999999999999999999965 599999999
Q ss_pred Hh-cCCChHHHHHHhhhCCcceeechhhHHHHHHHHHHhCCCCCChhHHHHHHHHhhccHHHHHHHHHHHH-hCCCCHHH
Q 043018 93 RA-HGVPEHLIAKLIMINPSSLIKRRDLFKTMMDVIKKIGIEPTNFMFILAVRSMSVLSKATWEKKKDALM-SFSWSEDE 170 (300)
Q Consensus 93 ~~-lGl~~~~i~~ll~~~P~ll~~~~~~l~~~v~~L~~lG~~~~~~~~~~~~~~l~~~~~~~l~~kv~~l~-~lG~s~~~ 170 (300)
++ +-++..++.+++-.+|+++.-.. ..++-|+.|-- .+|+.+-+
T Consensus 111 kekclftvqqvtkilhscpsvlredl----------------------------------gqleykfqyayfrmgikhpd 156 (239)
T 4fzv_B 111 KEKCLFTVQQVTKILHSCPSVLREDL----------------------------------GQLEYKFQYAYFRMGIKHPD 156 (239)
T ss_dssp HHHSCCCHHHHHHHHHHCGGGGTSCT----------------------------------THHHHHHHHHHHTSCCCHHH
T ss_pred HHhHHhhHHHHHHHHHhCcHHHHHHH----------------------------------hhhhhhHhHHHHHccCCCcc
Confidence 96 78899999999999999874432 13555666655 78888877
Q ss_pred HHHHHHcCCcccccchhhHHHHHHHHHHHhCC
Q 043018 171 FYLAFKRQPMLMLSSTKKIRELMDFFVNEIGL 202 (300)
Q Consensus 171 i~~m~~~~P~iL~~S~~~l~~ki~fl~~~~g~ 202 (300)
|.+ ...+.+|..+|+.+.-|+.. +|.
T Consensus 157 ivk-----seylqysltkikqrhiyler-lgr 182 (239)
T 4fzv_B 157 IVK-----SEYLQYSLTKIKQRHIYLER-LGR 182 (239)
T ss_dssp HHH-----TTGGGSCHHHHHHHHHHHHH-HTC
T ss_pred hhH-----HHHHHHHHHHHHHHHhHHHH-hcc
Confidence 762 35689999999999999865 664
No 9
>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}
Probab=87.87 E-value=1.2 Score=28.69 Aligned_cols=35 Identities=17% Similarity=0.211 Sum_probs=25.5
Q ss_pred HHhCCcccccchhhhhhhHHHHHHhcCCChHHHHHHhhh
Q 043018 70 VKQSSRIINCNIEKRLAPNVNTLRAHGVPEHLIAKLIMI 108 (300)
Q Consensus 70 l~~~P~iL~~s~e~~l~~~v~~L~~lGl~~~~i~~ll~~ 108 (300)
+..+|.+-..+++ .+++||++-|++.++|...+.+
T Consensus 19 FL~dp~V~~sp~~----~K~~FL~sKGLt~~EI~~Al~r 53 (54)
T 3ff5_A 19 FLQNSRVRQSPLA----TRRAFLKKKGLTDEEIDLAFQQ 53 (54)
T ss_dssp HHHCTTGGGSCHH----HHHHHHHHTTCCHHHHHHHHHH
T ss_pred HhCChhhhcCCHH----HHHHHHHHcCCCHHHHHHHHHc
Confidence 4456777666644 4788888888888888877754
No 10
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=87.61 E-value=1.8 Score=32.76 Aligned_cols=99 Identities=10% Similarity=0.131 Sum_probs=60.5
Q ss_pred hhHHHHHHhcCCChHHHHHHhhhCCcceeechhhHHHHHHHHH------HhCCCCCChhHHHHHHHHhhccH---HHHHH
Q 043018 86 APNVNTLRAHGVPEHLIAKLIMINPSSLIKRRDLFKTMMDVIK------KIGIEPTNFMFILAVRSMSVLSK---ATWEK 156 (300)
Q Consensus 86 ~~~v~~L~~lGl~~~~i~~ll~~~P~ll~~~~~~l~~~v~~L~------~lG~~~~~~~~~~~~~~l~~~~~---~~l~~ 156 (300)
+..++.|.+.|++...+.+.+...- . ..+..++||. +.|++.... -.++. ....+. ....+
T Consensus 9 ~~~v~~l~~MGFp~~~~~kAl~~~g------~-~~e~amewL~~h~~L~d~~~d~~~~--e~~l~-~~~~~~~~~~~~~~ 78 (118)
T 4ae4_A 9 RQCVETVVNMGYSYECVLRAMKAAG------A-NIEQILDYLFAHGQLCEKGFDPLLV--EEALE-MHQCSEEKMMEFLQ 78 (118)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHC------S-CHHHHHHHHHHHHHHHHTTCCHHHH--HHHHH-HCSSCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHC------c-CHHHHHHHHHHhchhcccCCChhhh--HHHHH-hccCCccccccCHH
Confidence 4578888999999999998886532 1 4666677763 334433211 01111 111111 12346
Q ss_pred HHHHHHhCCCCHHHHHHHHHcCCcccccchhhHHHHHHHHHHHhC
Q 043018 157 KKDALMSFSWSEDEFYLAFKRQPMLMLSSTKKIRELMDFFVNEIG 201 (300)
Q Consensus 157 kv~~l~~lG~s~~~i~~m~~~~P~iL~~S~~~l~~ki~fl~~~~g 201 (300)
.+.-|.++||+.+++.+.++.+- ..+.+-+++|....|
T Consensus 79 ~v~~L~eMGF~~~~a~~AL~~~~-------nd~erAlewL~~~~~ 116 (118)
T 4ae4_A 79 LMSKFKEMGFELKDIKEVLLLHN-------NDQDNALEDLMARAG 116 (118)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHTT-------TCHHHHHHHHHHHC-
T ss_pred HHHHHHHcCCCHHHHHHHHHHcC-------CCHHHHHHHHHHhcc
Confidence 78888899999999997777543 346677777776544
No 11
>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}
Probab=87.17 E-value=1.1 Score=28.88 Aligned_cols=26 Identities=19% Similarity=0.344 Sum_probs=23.2
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHcC
Q 043018 153 TWEKKKDALMSFSWSEDEFYLAFKRQ 178 (300)
Q Consensus 153 ~l~~kv~~l~~lG~s~~~i~~m~~~~ 178 (300)
.+..|++||++-|++.+||..++.+.
T Consensus 29 p~~~K~~FL~sKGLt~~EI~~Al~rs 54 (54)
T 3ff5_A 29 PLATRRAFLKKKGLTDEEIDLAFQQS 54 (54)
T ss_dssp CHHHHHHHHHHTTCCHHHHHHHHHHC
T ss_pred CHHHHHHHHHHcCCCHHHHHHHHHcC
Confidence 47899999999999999999988763
No 12
>2w84_A Peroxisomal membrane protein PEX14; zellweger syndrome, alternative splicing, phosphoprotein, protein complex, disease mutation, peroxisome; NMR {Homo sapiens} PDB: 2w85_A
Probab=80.49 E-value=2 Score=29.10 Aligned_cols=36 Identities=17% Similarity=0.220 Sum_probs=26.2
Q ss_pred HHhCCcccccchhhhhhhHHHHHHhcCCChHHHHHHhhhC
Q 043018 70 VKQSSRIINCNIEKRLAPNVNTLRAHGVPEHLIAKLIMIN 109 (300)
Q Consensus 70 l~~~P~iL~~s~e~~l~~~v~~L~~lGl~~~~i~~ll~~~ 109 (300)
+..+|.+-...++ .+++||++-|++.++|...+.+.
T Consensus 24 FLqdp~V~~sp~~----~K~~FL~sKGLt~eEI~~Al~ra 59 (70)
T 2w84_A 24 FLQNSRVRQSPLA----TRRAFLKKKGLTDEEIDMAFQQS 59 (70)
T ss_dssp HHCSTTGGGSCHH----HHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HhCChhhhhCCHH----HHHHHHHHcCCCHHHHHHHHHHc
Confidence 3456777666644 47888888888888888877653
No 13
>2w84_A Peroxisomal membrane protein PEX14; zellweger syndrome, alternative splicing, phosphoprotein, protein complex, disease mutation, peroxisome; NMR {Homo sapiens} PDB: 2w85_A
Probab=75.41 E-value=3.1 Score=28.19 Aligned_cols=26 Identities=15% Similarity=0.328 Sum_probs=23.6
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHcC
Q 043018 153 TWEKKKDALMSFSWSEDEFYLAFKRQ 178 (300)
Q Consensus 153 ~l~~kv~~l~~lG~s~~~i~~m~~~~ 178 (300)
.+..|++||++-|++.+||..++.+.
T Consensus 34 p~~~K~~FL~sKGLt~eEI~~Al~ra 59 (70)
T 2w84_A 34 PLATRRAFLKKKGLTDEEIDMAFQQS 59 (70)
T ss_dssp CHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCHHHHHHHHHHc
Confidence 47899999999999999999998874
No 14
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=68.07 E-value=4.6 Score=25.63 Aligned_cols=25 Identities=20% Similarity=0.199 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHH
Q 043018 152 ATWEKKKDALMSFSWSEDEFYLAFK 176 (300)
Q Consensus 152 ~~l~~kv~~l~~lG~s~~~i~~m~~ 176 (300)
+.....|+-|.++||+++++.+.+.
T Consensus 9 ~~~~~~Ia~Lm~mGFsr~~ai~AL~ 33 (52)
T 2ooa_A 9 ENVDAKIAKLMGEGYAFEEVKRALE 33 (52)
T ss_dssp --CHHHHHHHHHTTCCHHHHHHHHH
T ss_pred CChHHHHHHHHHcCCCHHHHHHHHH
Confidence 4556889999999999999986655
No 15
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=67.19 E-value=8.1 Score=24.04 Aligned_cols=39 Identities=10% Similarity=0.294 Sum_probs=27.8
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHcCCcccccchhhHHHHHHHHHH
Q 043018 153 TWEKKKDALMSFSWSEDEFYLAFKRQPMLMLSSTKKIRELMDFFVN 198 (300)
Q Consensus 153 ~l~~kv~~l~~lG~s~~~i~~m~~~~P~iL~~S~~~l~~ki~fl~~ 198 (300)
..+.+|+-|.++||+++++...++.+-. ++..-++||..
T Consensus 7 ~~~~~i~~L~~MGF~~~~a~~AL~~~~~-------n~e~A~e~L~~ 45 (49)
T 1ify_A 7 EYETMLTEIMSMGYERERVVAALRASYN-------NPHRAVEYLLT 45 (49)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHTTTS-------CSHHHHHHHHH
T ss_pred cCHHHHHHHHHcCCCHHHHHHHHHHhCC-------CHHHHHHHHHh
Confidence 4567888899999999998877775432 34555677654
No 16
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=62.51 E-value=24 Score=26.39 Aligned_cols=20 Identities=10% Similarity=0.089 Sum_probs=10.4
Q ss_pred HHHHHHHhCCCCCCchhHHH
Q 043018 15 PKIDYFESVGISGADLPKFL 34 (300)
Q Consensus 15 ~~l~~L~~lG~s~~~i~~ii 34 (300)
..++-|.++||+...+.+.+
T Consensus 10 ~~v~~l~~MGFp~~~~~kAl 29 (118)
T 4ae4_A 10 QCVETVVNMGYSYECVLRAM 29 (118)
T ss_dssp HHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHH
Confidence 34555555666555544443
No 17
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=61.59 E-value=6.4 Score=23.61 Aligned_cols=23 Identities=17% Similarity=0.284 Sum_probs=18.4
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHc
Q 043018 155 EKKKDALMSFSWSEDEFYLAFKR 177 (300)
Q Consensus 155 ~~kv~~l~~lG~s~~~i~~m~~~ 177 (300)
+++|+-|.++||+++++.+.+..
T Consensus 5 e~~i~~L~~MGF~~~~a~~AL~~ 27 (43)
T 2g3q_A 5 SLAVEELSGMGFTEEEAHNALEK 27 (43)
T ss_dssp HHHHHHHHTTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHH
Confidence 36688888999999988877664
No 18
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=60.82 E-value=12 Score=23.63 Aligned_cols=41 Identities=10% Similarity=0.229 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHcCCcccccchhhHHHHHHHHHH
Q 043018 151 KATWEKKKDALMSFSW-SEDEFYLAFKRQPMLMLSSTKKIRELMDFFVN 198 (300)
Q Consensus 151 ~~~l~~kv~~l~~lG~-s~~~i~~m~~~~P~iL~~S~~~l~~ki~fl~~ 198 (300)
++....+++-|.++|| +++.+...+... --++..-++||..
T Consensus 8 e~~~~~~l~~L~~MGF~~~~~~~~AL~~t-------~gnve~Ave~L~~ 49 (53)
T 2knz_A 8 EVRFQQQLEQLNSMGFINREANLQALIAT-------GGDINAAIERLLG 49 (53)
T ss_dssp HHHHHHHHHHHHTTTCCCHHHHHHHHHHH-------TSCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHcCCCCHHHHHHHHHHh-------CCCHHHHHHHHHH
Confidence 4567778888888888 666666444422 1235566666654
No 19
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=60.57 E-value=11 Score=21.95 Aligned_cols=24 Identities=21% Similarity=0.177 Sum_probs=18.1
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHcC
Q 043018 155 EKKKDALMSFSWSEDEFYLAFKRQ 178 (300)
Q Consensus 155 ~~kv~~l~~lG~s~~~i~~m~~~~ 178 (300)
.++|+-|.++||+.++..+.+..+
T Consensus 5 ~~~i~~L~~mGf~~~~a~~AL~~~ 28 (40)
T 1z96_A 5 NSKIAQLVSMGFDPLEAAQALDAA 28 (40)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHc
Confidence 457888888899998887666543
No 20
>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens}
Probab=58.75 E-value=12 Score=23.00 Aligned_cols=24 Identities=21% Similarity=0.231 Sum_probs=19.9
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHH
Q 043018 153 TWEKKKDALMSFSWSEDEFYLAFK 176 (300)
Q Consensus 153 ~l~~kv~~l~~lG~s~~~i~~m~~ 176 (300)
.++..|+-|.++||+.+++.+.+.
T Consensus 3 ~~e~~I~~L~s~Gf~~~~~~rAL~ 26 (46)
T 2oo9_A 3 QLSSEIENLMSQGYSYQDIQKALV 26 (46)
T ss_dssp HHHHHHHHHHHTTBCHHHHHHHHH
T ss_pred chHHHHHHHHHcCCCHHHHHHHHH
Confidence 467788999999999999986654
No 21
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2}
Probab=54.84 E-value=36 Score=22.55 Aligned_cols=55 Identities=15% Similarity=0.108 Sum_probs=29.5
Q ss_pred HHHHHHHHH-hCCCCHHHHHHHHHcCCccc--------ccchhhHHHHHHHHHHHhCCChhhhh
Q 043018 154 WEKKKDALM-SFSWSEDEFYLAFKRQPMLM--------LSSTKKIRELMDFFVNEIGLKPLDIV 208 (300)
Q Consensus 154 l~~kv~~l~-~lG~s~~~i~~m~~~~P~iL--------~~S~~~l~~ki~fl~~~~g~~~~~i~ 208 (300)
+..++..++ ..|++.+++.+.+.-.++-+ ..+.+.+..-.+.|-+.+|++.++++
T Consensus 11 ~~~~l~~~r~~~glsq~~lA~~~gis~~~i~~~e~g~~~~~~~~l~~~~~~l~~~~~v~~~~l~ 74 (84)
T 2ef8_A 11 LVQLLTKLRKEASLSQSELAIFLGLSQSDISKIESFERRLDALELFELLEVVASRLGLPMDILL 74 (84)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTSSCCBHHHHHHHHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHHccccCCCHHHHH
Confidence 444555554 45666666555443333222 23444455555566666788887765
No 22
>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens}
Probab=54.83 E-value=15 Score=23.51 Aligned_cols=25 Identities=20% Similarity=0.226 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHH
Q 043018 152 ATWEKKKDALMSFSWSEDEFYLAFK 176 (300)
Q Consensus 152 ~~l~~kv~~l~~lG~s~~~i~~m~~ 176 (300)
...+..|+-|.++||+++++.+.+.
T Consensus 5 ~p~e~~Ia~L~smGfsr~da~~AL~ 29 (56)
T 2juj_A 5 PQLSSEIENLMSQGYSYQDIQKALV 29 (56)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CCChHHHHHHHHcCCCHHHHHHHHH
Confidence 3467789999999999999986554
No 23
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=54.37 E-value=16 Score=23.27 Aligned_cols=40 Identities=10% Similarity=0.179 Sum_probs=21.6
Q ss_pred HHHHHHhcCCChHHHHHHhhhCCcceeechhhHHHHHHHHHHhCCC
Q 043018 88 NVNTLRAHGVPEHLIAKLIMINPSSLIKRRDLFKTMMDVIKKIGIE 133 (300)
Q Consensus 88 ~v~~L~~lGl~~~~i~~ll~~~P~ll~~~~~~l~~~v~~L~~lG~~ 133 (300)
.++-|.+.|++.+...+.+... ....+.+.++||.+++++
T Consensus 12 mlq~L~eMGFd~erae~Alk~T------g~~Gle~AmewL~k~~~~ 51 (54)
T 2cos_A 12 MLQELVNAGCDQEMAGRALKQT------GSRSIEAALEYISKMSGP 51 (54)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHH------TSCCHHHHHHHHHHHSCS
T ss_pred HHHHHHHcCCCHHHHHHHHHHh------CcccHHHHHHHHHHhcCC
Confidence 3555666666666555555321 122366666666666554
No 24
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=53.97 E-value=12 Score=26.31 Aligned_cols=40 Identities=8% Similarity=0.057 Sum_probs=30.8
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHcCCcccccchhhHHHHHHHHHHHhC
Q 043018 155 EKKKDALMSFSWSEDEFYLAFKRQPMLMLSSTKKIRELMDFFVNEIG 201 (300)
Q Consensus 155 ~~kv~~l~~lG~s~~~i~~m~~~~P~iL~~S~~~l~~ki~fl~~~~g 201 (300)
..+|+-|.++||+++++...++..- .++..-++||....|
T Consensus 30 ee~I~~Lv~MGF~~~~A~~AL~~t~-------gdve~A~e~L~sh~~ 69 (83)
T 1veg_A 30 QESINQLVYMGFDTVVAEAALRVFG-------GNVQLAAQTLAHHGG 69 (83)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHTT-------TCHHHHHHHHHHHTS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcC-------CCHHHHHHHHHhCCC
Confidence 5678888899999999887776433 347788899988766
No 25
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=52.65 E-value=14 Score=24.28 Aligned_cols=38 Identities=11% Similarity=0.238 Sum_probs=28.2
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHcCCcccccchhhHHHHHHHHHHH
Q 043018 155 EKKKDALMSFSWSEDEFYLAFKRQPMLMLSSTKKIRELMDFFVNE 199 (300)
Q Consensus 155 ~~kv~~l~~lG~s~~~i~~m~~~~P~iL~~S~~~l~~ki~fl~~~ 199 (300)
.++|+-|.++||+.+++.+.+..+= .++..-++||...
T Consensus 10 ~~~I~~L~~MGF~~~~a~~AL~~~~-------~nve~A~e~L~~~ 47 (63)
T 1wji_A 10 EKALKHITEMGFSKEASRQALMDNG-------NNLEAALNVLLTS 47 (63)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHTT-------SCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhC-------CCHHHHHHHHHHC
Confidence 4568889999999999887766542 2467778888763
No 26
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=51.86 E-value=13 Score=23.58 Aligned_cols=23 Identities=22% Similarity=0.237 Sum_probs=18.4
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHH
Q 043018 154 WEKKKDALMSFSWSEDEFYLAFK 176 (300)
Q Consensus 154 l~~kv~~l~~lG~s~~~i~~m~~ 176 (300)
...+|+-|.++||+++++.+.+.
T Consensus 9 ~e~~I~~L~~lGF~r~~ai~AL~ 31 (53)
T 2d9s_A 9 LSSEIERLMSQGYSYQDIQKALV 31 (53)
T ss_dssp SHHHHHHHHHHTCCHHHHHHHHH
T ss_pred hHHHHHHHHHcCCCHHHHHHHHH
Confidence 34568889999999999886655
No 27
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=51.79 E-value=33 Score=21.50 Aligned_cols=25 Identities=16% Similarity=0.271 Sum_probs=13.7
Q ss_pred hhhhhhHHHHHHhcCC-ChHHHHHHh
Q 043018 82 EKRLAPNVNTLRAHGV-PEHLIAKLI 106 (300)
Q Consensus 82 e~~l~~~v~~L~~lGl-~~~~i~~ll 106 (300)
+......++.|.++|+ +++...+.+
T Consensus 8 e~~~~~~l~~L~~MGF~~~~~~~~AL 33 (53)
T 2knz_A 8 EVRFQQQLEQLNSMGFINREANLQAL 33 (53)
T ss_dssp HHHHHHHHHHHHTTTCCCHHHHHHHH
T ss_pred hhHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 3345556666666666 554444444
No 28
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=50.73 E-value=11 Score=25.67 Aligned_cols=39 Identities=8% Similarity=0.255 Sum_probs=29.4
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHcCCcccccchhhHHHHHHHHHH
Q 043018 153 TWEKKKDALMSFSWSEDEFYLAFKRQPMLMLSSTKKIRELMDFFVN 198 (300)
Q Consensus 153 ~l~~kv~~l~~lG~s~~~i~~m~~~~P~iL~~S~~~l~~ki~fl~~ 198 (300)
..+++|+-|.++||+++++...++.+ -.++..-++||..
T Consensus 28 ~~ee~I~~L~eMGF~r~~a~~AL~~~-------~~nve~Ave~Ll~ 66 (73)
T 1vg5_A 28 ASEEQIQKLVAMGFDRTQVEVALAAA-------DDDLTVAVEILMS 66 (73)
T ss_dssp CCHHHHHHHHTTTCCHHHHHHHHHHH-------TSCHHHHHHHHHT
T ss_pred ccHHHHHHHHHcCCCHHHHHHHHHHh-------CCCHHHHHHHHHH
Confidence 45778899999999999999777743 1246667788764
No 29
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=49.20 E-value=31 Score=22.64 Aligned_cols=45 Identities=16% Similarity=0.203 Sum_probs=31.1
Q ss_pred HHhcCCChHHHHHHhhhCCcceeechhhHHHHHHHHHHhCCCCCC
Q 043018 92 LRAHGVPEHLIAKLIMINPSSLIKRRDLFKTMMDVIKKIGIEPTN 136 (300)
Q Consensus 92 L~~lGl~~~~i~~ll~~~P~ll~~~~~~l~~~v~~L~~lG~~~~~ 136 (300)
=+.+|++...|.+++...+.-...+.+..+...+..+++|+.++.
T Consensus 7 A~~aGVS~sTVSrvLng~~~~~~vs~et~~rI~~aa~~lgY~pn~ 51 (65)
T 1uxc_A 7 ARLAGVSRTTASYVINGKAKQYRVSDKTVEKVMAVVREHNYHPNA 51 (65)
T ss_dssp HHHHTSCHHHHHHHHHTCTTTTTCTTHHHHHHHHHHHHHTCCCC-
T ss_pred HHHHCcCHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHhCCCccH
Confidence 346899999999999876621223555566666777889988773
No 30
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=46.37 E-value=15 Score=23.08 Aligned_cols=25 Identities=8% Similarity=0.262 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHH
Q 043018 152 ATWEKKKDALMSFSW-SEDEFYLAFK 176 (300)
Q Consensus 152 ~~l~~kv~~l~~lG~-s~~~i~~m~~ 176 (300)
+.+..+++-|.++|| +++.+.+.+.
T Consensus 10 ~~~~~~l~~L~~MGF~~~~~~~~AL~ 35 (52)
T 2jy5_A 10 VRFQQQLEQLSAMGFLNREANLQALI 35 (52)
T ss_dssp TTTHHHHHHHHHTTCCCHHHHHHHHH
T ss_pred hHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 345667777777777 6665554443
No 31
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=45.85 E-value=18 Score=32.67 Aligned_cols=39 Identities=15% Similarity=0.120 Sum_probs=28.6
Q ss_pred ChhHHHHHHHhCCCCCCchhHHHhhcCccccccccCcchhhhhHhhh
Q 043018 12 SLRPKIDYFESVGISGADLPKFLCSNKQLLVVSLKSNIIPIFEFLKG 58 (300)
Q Consensus 12 ~l~~~l~~L~~lG~s~~~i~~ii~~~P~lL~~s~e~~l~p~v~fL~~ 58 (300)
.....|+-|.++|+++.++.+.+...- ++..--++||.+
T Consensus 167 ~~~~~i~~l~~MGf~~~~~~~AL~a~~--------nn~~~A~e~L~~ 205 (368)
T 1oqy_A 167 EYETMLTEIMSMGYERERVVAALRASY--------NNPHRAVEYLLT 205 (368)
T ss_dssp THHHHHHHHHTTTCCSHHHHHHHHHSC--------SSTTHHHHTTTT
T ss_pred chHHHHHHHHHcCCCHHHHHHHHHHcC--------CCHHHHHHHHHh
Confidence 367889999999999999988875322 255556777753
No 32
>3dfg_A Xcrecx, regulatory protein RECX; RECX RECA, homologous recombination, tandem repeats, three-helix bundle, cytoplasm; 1.50A {Xanthomonas campestris PV}
Probab=42.23 E-value=1.2e+02 Score=23.58 Aligned_cols=136 Identities=15% Similarity=0.151 Sum_probs=76.0
Q ss_pred HHHHHHhCCCCCCchhHHHhhcCccccccccCcchhhhhHhhhhcc-CChhHHHHHHhCCcccccchhhhhhhHHHHHHh
Q 043018 16 KIDYFESVGISGADLPKFLCSNKQLLVVSLKSNIIPIFEFLKGLVQ-TNVNLVHAVKQSSRIINCNIEKRLAPNVNTLRA 94 (300)
Q Consensus 16 ~l~~L~~lG~s~~~i~~ii~~~P~lL~~s~e~~l~p~v~fL~~~g~-~~~~v~~il~~~P~iL~~s~e~~l~~~v~~L~~ 94 (300)
-+.+|..-.-|..+|.+-+.+. +.+ +..+...+++|...|. ++........+.-.-=+.+. ....+-|+.
T Consensus 23 Al~~Ls~r~~s~~EL~~KL~~k----g~~-~e~Ie~vl~~l~~~g~ldD~rfA~~~v~~~~~~~~G~----~~I~~eL~~ 93 (162)
T 3dfg_A 23 ALGLLVHREHSKKELNRKLQAR----GIE-PEAAQAAVERLAGEGWQDDVRFAASVVRNRASSGYGP----LHIRAELGT 93 (162)
T ss_dssp HHHHHHHSCCCHHHHHHHHHHT----TCC-HHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHTTTCCH----HHHHHHHHH
T ss_pred HHHHhhchhhhHHHHHHHHHhc----CCC-HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHccccH----HHHHHHHHH
Confidence 3455555555666665555433 222 2367778889988886 55565555443211012222 123455888
Q ss_pred cCCChHHHHHHhhhCCcceeechhhHHHHHHHHH-HhCCCCCChhHHHHHHHHhhccHHHHHHHHHHHHhCCCCHHHHHH
Q 043018 95 HGVPEHLIAKLIMINPSSLIKRRDLFKTMMDVIK-KIGIEPTNFMFILAVRSMSVLSKATWEKKKDALMSFSWSEDEFYL 173 (300)
Q Consensus 95 lGl~~~~i~~ll~~~P~ll~~~~~~l~~~v~~L~-~lG~~~~~~~~~~~~~~l~~~~~~~l~~kv~~l~~lG~s~~~i~~ 173 (300)
-|++.+.|...+.... .+........+. ..|-... .....-..-+.||..-||+.+.|..
T Consensus 94 KGI~~~~I~~al~~~~------~de~e~a~~l~~Kk~~~~~~-------------~~~~~k~K~~~~L~rrGF~~~~I~~ 154 (162)
T 3dfg_A 94 HGLDSDAVSAAMATFE------GDWTENALDLIRRRFGEDGP-------------VDLAQRRKAADLLARRGFDGNSIRL 154 (162)
T ss_dssp TTCCHHHHHHHHTTCC------SCHHHHHHHHHHHHHCTTCC-------------CSHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred cCCCHHHHHHHHHhCc------HhHHHHHHHHHHHhcCCCCC-------------CCHHHHHHHHHHHHHCCCCHHHHHH
Confidence 9999999999887643 122333333332 3432110 1122334456889999999999998
Q ss_pred HHHcCC
Q 043018 174 AFKRQP 179 (300)
Q Consensus 174 m~~~~P 179 (300)
++...|
T Consensus 155 ~l~~~~ 160 (162)
T 3dfg_A 155 ATRFDL 160 (162)
T ss_dssp HTTC--
T ss_pred HHhcCc
Confidence 776544
No 33
>3idw_A Actin cytoskeleton-regulatory complex protein SLA; clathrin adaptor, endocytosis, SAM domain, yeast, actin-BIND membrane, endosome; 1.85A {Saccharomyces cerevisiae}
Probab=42.21 E-value=25 Score=23.86 Aligned_cols=18 Identities=28% Similarity=0.429 Sum_probs=10.9
Q ss_pred HHHHhcCCChHHHHHHhh
Q 043018 90 NTLRAHGVPEHLIAKLIM 107 (300)
Q Consensus 90 ~~L~~lGl~~~~i~~ll~ 107 (300)
+.|+++|+...+|.+++.
T Consensus 42 ~~Lr~LGi~eGDIIrVmk 59 (72)
T 3idw_A 42 SMLRTLGLREGDIVRVMK 59 (72)
T ss_dssp HHHHHTTCCHHHHHHHHH
T ss_pred HHHHHcCCchhhHHHHHH
Confidence 456666666666666553
No 34
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=42.11 E-value=16 Score=22.29 Aligned_cols=35 Identities=9% Similarity=0.310 Sum_probs=25.3
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHcCCcccccchhhHHHHHHHHH
Q 043018 155 EKKKDALMSFSWSEDEFYLAFKRQPMLMLSSTKKIRELMDFFV 197 (300)
Q Consensus 155 ~~kv~~l~~lG~s~~~i~~m~~~~P~iL~~S~~~l~~ki~fl~ 197 (300)
..+|+-|.++||+.+++.+.++.. + ++..-++||.
T Consensus 10 ~~~v~~L~~MGF~~~~a~~AL~~~----~----n~e~A~~~L~ 44 (47)
T 2ekk_A 10 QQQLQQLMDMGFTREHAMEALLNT----S----TMEQATEYLL 44 (47)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHS----C----SHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHc----C----CHHHHHHHHH
Confidence 456788889999999988877765 1 3556666664
No 35
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=41.93 E-value=21 Score=23.31 Aligned_cols=39 Identities=18% Similarity=0.336 Sum_probs=29.7
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHcCCcccccchhhHHHHHHHHHHHh
Q 043018 155 EKKKDALMSFSWSEDEFYLAFKRQPMLMLSSTKKIRELMDFFVNEI 200 (300)
Q Consensus 155 ~~kv~~l~~lG~s~~~i~~m~~~~P~iL~~S~~~l~~ki~fl~~~~ 200 (300)
..+|+-|.++||+++++.+.++.+-. ++..-++||...+
T Consensus 10 ~~~v~~L~~MGF~~~~a~~AL~~t~~-------nve~A~e~L~~~~ 48 (63)
T 2dak_A 10 EDCVTTIVSMGFSRDQALKALRATNN-------SLERAVDWIFSHI 48 (63)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHTTS-------CSHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCC-------CHHHHHHHHHhCC
Confidence 56788888999999999988886532 3667788887754
No 36
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=41.71 E-value=21 Score=24.23 Aligned_cols=37 Identities=30% Similarity=0.433 Sum_probs=27.5
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHcCCcccccchhhHHHHHHHHHH
Q 043018 155 EKKKDALMSFSWSEDEFYLAFKRQPMLMLSSTKKIRELMDFFVN 198 (300)
Q Consensus 155 ~~kv~~l~~lG~s~~~i~~m~~~~P~iL~~S~~~l~~ki~fl~~ 198 (300)
..+|+-|.++||+.+++.+.++.+- .++..-++||..
T Consensus 30 ~~~v~~L~~MGF~~~~a~~AL~~t~-------~nve~Ave~L~~ 66 (73)
T 1wiv_A 30 QSSVDTLLSFGFAEDVARKALKASG-------GDIEKATDWVFN 66 (73)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHTT-------SCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhC-------CCHHHHHHHHHh
Confidence 5568888999999999887777532 246677788765
No 37
>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A
Probab=41.28 E-value=12 Score=23.13 Aligned_cols=23 Identities=13% Similarity=0.164 Sum_probs=16.1
Q ss_pred HHHHHHHhCCCCHHHHHHHHHcC
Q 043018 156 KKKDALMSFSWSEDEFYLAFKRQ 178 (300)
Q Consensus 156 ~kv~~l~~lG~s~~~i~~m~~~~ 178 (300)
++|+-|.++||++.++.+.+..+
T Consensus 6 eaI~rL~~mGF~~~~a~~Al~a~ 28 (47)
T 1dv0_A 6 EAIERLKALGFPESLVIQAYFAC 28 (47)
T ss_dssp HHHTTTTTTTCCHHHHHHHHTTT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHc
Confidence 45666778888888887665543
No 38
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=39.57 E-value=36 Score=20.73 Aligned_cols=25 Identities=16% Similarity=0.270 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHhCCCCH-HHHHHHH
Q 043018 151 KATWEKKKDALMSFSWSE-DEFYLAF 175 (300)
Q Consensus 151 ~~~l~~kv~~l~~lG~s~-~~i~~m~ 175 (300)
++.++.+++-|.++||+. +.+.+.+
T Consensus 4 ~~~~~~~i~~L~~MGF~d~~~~~~AL 29 (46)
T 2bwb_A 4 EERYEHQLRQLNDMGFFDFDRNVAAL 29 (46)
T ss_dssp HHHTHHHHHHHHHTTCCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCcHHHHHHHH
Confidence 345677888888888864 4444433
No 39
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=38.64 E-value=37 Score=22.26 Aligned_cols=38 Identities=13% Similarity=0.385 Sum_probs=28.5
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHcCCcccccchhhHHHHHHHHHHH
Q 043018 155 EKKKDALMSFSWSEDEFYLAFKRQPMLMLSSTKKIRELMDFFVNE 199 (300)
Q Consensus 155 ~~kv~~l~~lG~s~~~i~~m~~~~P~iL~~S~~~l~~ki~fl~~~ 199 (300)
...|+-+.++||+.++..+.++... .++.+-+|||...
T Consensus 20 ~e~V~~LvsMGFs~~qA~kALKat~-------~NvErAaDWLFSH 57 (63)
T 1wgn_A 20 RQCVETVVNMGYSYECVLRAMKKKG-------ENIEQILDYLFAH 57 (63)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHC-------SCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcC-------CCHHHHHHHHHhC
Confidence 4558888899999999987777544 3577777887654
No 40
>2l8n_A Transcriptional repressor CYTR; bacterial gene repressor, helix turn helix binding domain, L family, transcription regulation, binding protein; NMR {Escherichia coli} PDB: 2lcv_A
Probab=35.63 E-value=70 Score=20.98 Aligned_cols=42 Identities=10% Similarity=0.136 Sum_probs=30.3
Q ss_pred HHHhcCCChHHHHHHhhhCCcceeechhhHHHHHHHHHHhCCCCC
Q 043018 91 TLRAHGVPEHLIAKLIMINPSSLIKRRDLFKTMMDVIKKIGIEPT 135 (300)
Q Consensus 91 ~L~~lGl~~~~i~~ll~~~P~ll~~~~~~l~~~v~~L~~lG~~~~ 135 (300)
.=+..|++...|.+++...|. .+.+..+...+..+++|+.++
T Consensus 15 iA~~aGVS~sTVSr~ln~~~~---vs~~t~~rV~~~a~~lgY~pn 56 (67)
T 2l8n_A 15 VALKAKVSTATVSRALMNPDK---VSQATRNRVEKAAREVGYLPQ 56 (67)
T ss_dssp HHHHTTCCHHHHHHTTTCCCC---SCHHHHHHHHHHHHHHCCCC-
T ss_pred HHHHHCCCHHHHHHHHcCCCC---CCHHHHHHHHHHHHHhCCCcc
Confidence 344689999999999877664 255555666677788998776
No 41
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=35.40 E-value=27 Score=22.53 Aligned_cols=23 Identities=13% Similarity=0.134 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHhCCCC-HHHHHH
Q 043018 151 KATWEKKKDALMSFSWS-EDEFYL 173 (300)
Q Consensus 151 ~~~l~~kv~~l~~lG~s-~~~i~~ 173 (300)
++.++.+++-|.++||+ ++.+.+
T Consensus 14 e~~~~~qi~~L~~MGF~d~~~~~~ 37 (58)
T 1wr1_B 14 EERYEHQLRQLNDMGFFDFDRNVA 37 (58)
T ss_dssp HHHTHHHHHHHHHHTCCCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCcHHHHHH
Confidence 44567777777777775 444343
No 42
>3c1d_A Protein ORAA, regulatory protein RECX; tandem repeats, helix-turn-helix, cytoplasm, DNA damage, DNA repair, SOS response, DNA binding protein; 1.80A {Escherichia coli}
Probab=34.98 E-value=1.3e+02 Score=23.23 Aligned_cols=135 Identities=11% Similarity=0.044 Sum_probs=74.1
Q ss_pred HHHHHhCCCCCCchhHHHhh------cCccccccccCcchhhhhHhhhhcc-CChhHHHHHHhCCcccccchhhhhhhHH
Q 043018 17 IDYFESVGISGADLPKFLCS------NKQLLVVSLKSNIIPIFEFLKGLVQ-TNVNLVHAVKQSSRIINCNIEKRLAPNV 89 (300)
Q Consensus 17 l~~L~~lG~s~~~i~~ii~~------~P~lL~~s~e~~l~p~v~fL~~~g~-~~~~v~~il~~~P~iL~~s~e~~l~~~v 89 (300)
+.+|..-.-|..++.+-+.+ .|.-...+ +..+...++.|.+.|. ++........+.-.-=+.+. ....
T Consensus 12 l~~Ls~r~~S~~EL~~kL~~k~~~~~g~e~~~~~-~~~i~~vl~~l~~~g~ldD~rfA~~~v~~~~~~g~G~----~~I~ 86 (159)
T 3c1d_A 12 VRILAVRDHSEQELRRKLAAPIMGKNGPEEIDAT-AEDYERVIAWCHEHGYLDDSRFVARFIASRSRKGYGP----ARIR 86 (159)
T ss_dssp HHHHTTSCCCHHHHHHHHHCC-----------CC-HHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHTTCCH----HHHH
T ss_pred HHHhhcccccHHHHHHHHHHHhhcccCccccCCC-HHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHhCCccH----HHHH
Confidence 44555555566666665554 22211123 2368888999999886 66666665544221111222 1234
Q ss_pred HHHHhcCCChHHHHHHhhhCCcceeechhhHHHHHHHH-HHhCCCCCChhHHHHHHHHhhccHHHHHHHHHHHHhCCCCH
Q 043018 90 NTLRAHGVPEHLIAKLIMINPSSLIKRRDLFKTMMDVI-KKIGIEPTNFMFILAVRSMSVLSKATWEKKKDALMSFSWSE 168 (300)
Q Consensus 90 ~~L~~lGl~~~~i~~ll~~~P~ll~~~~~~l~~~v~~L-~~lG~~~~~~~~~~~~~~l~~~~~~~l~~kv~~l~~lG~s~ 168 (300)
.-|+.-|++.+.|...+..... +........+ +.+|-... .....-..-+.||..-||+.
T Consensus 87 ~eL~~KGI~~~~i~~al~~~~~------d~~~~a~~l~~kk~~~~~~-------------~~~~~~~K~~~~L~rrGF~~ 147 (159)
T 3c1d_A 87 QELNQKGISREATEKAMREADI------DWAALARDQATRKYGEPLP-------------TVFSEKVKIQRFLLYRGYLM 147 (159)
T ss_dssp HHHHHTTCCHHHHHHHHHHHCC------CHHHHHHHHHHHHHCSSCC-------------CSHHHHHHHHHHHHHTTCCH
T ss_pred HHHHHcCCCHHHHHHHHHHcCH------hHHHHHHHHHHHHcCCCCC-------------CCHHHHHHHHHHHHHCCCCH
Confidence 5688899999999888865421 2233333333 23443111 11223345567888999999
Q ss_pred HHHHHHH
Q 043018 169 DEFYLAF 175 (300)
Q Consensus 169 ~~i~~m~ 175 (300)
+.|..++
T Consensus 148 ~~i~~~l 154 (159)
T 3c1d_A 148 EDIQDIW 154 (159)
T ss_dssp HHHTTCC
T ss_pred HHHHHHH
Confidence 9887544
No 43
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=34.33 E-value=43 Score=24.41 Aligned_cols=45 Identities=18% Similarity=0.288 Sum_probs=30.9
Q ss_pred hhccHHHHHHHHHHHHhC-CCCHHHHHHHHHcCCcccccchhhHHHHHHHHHH
Q 043018 147 SVLSKATWEKKKDALMSF-SWSEDEFYLAFKRQPMLMLSSTKKIRELMDFFVN 198 (300)
Q Consensus 147 ~~~~~~~l~~kv~~l~~l-G~s~~~i~~m~~~~P~iL~~S~~~l~~ki~fl~~ 198 (300)
...+...++++|+.+.++ ||+.+++...+..+=. .+..-+++|.+
T Consensus 32 ~~~~d~d~eekVk~L~EmtG~seeeAr~AL~~~ng-------Dl~~AI~~Lle 77 (104)
T 1wj7_A 32 SDHNDADFEEKVKQLIDITGKNQDECVIALHDCNG-------DVNRAINVLLE 77 (104)
T ss_dssp HHSCCHHHHHHHHHHHHHTCCCHHHHHHHHHHHTS-------CHHHHHHHHHT
T ss_pred hcCCcccHHHHHHHHHHhhCCCHHHHHHHHHHcCC-------CHHHHHHHHHh
Confidence 334455688999999976 9999998866653321 35666777765
No 44
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=33.64 E-value=41 Score=23.59 Aligned_cols=23 Identities=9% Similarity=-0.067 Sum_probs=19.0
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHH
Q 043018 154 WEKKKDALMSFSWSEDEFYLAFK 176 (300)
Q Consensus 154 l~~kv~~l~~lG~s~~~i~~m~~ 176 (300)
+-..|..++++|||-++|..++.
T Consensus 5 rL~~I~~lr~lGfsL~eIk~~l~ 27 (99)
T 1q08_A 5 RLKFIRHARQLGFSLESIRELLS 27 (99)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHH
Confidence 34567788899999999999886
No 45
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=32.20 E-value=98 Score=20.08 Aligned_cols=46 Identities=15% Similarity=0.003 Sum_probs=29.7
Q ss_pred HHhCCCCHHHHHHHHHcCCcccccchhhHHHHHHHHHHHhCCChhhh
Q 043018 161 LMSFSWSEDEFYLAFKRQPMLMLSSTKKIRELMDFFVNEIGLKPLDI 207 (300)
Q Consensus 161 l~~lG~s~~~i~~m~~~~P~iL~~S~~~l~~ki~fl~~~~g~~~~~i 207 (300)
-+.+|+|...|.+++...+.-...|.+. +.++.-..+++|+.++..
T Consensus 7 A~~aGVS~sTVSrvLng~~~~~~vs~et-~~rI~~aa~~lgY~pn~~ 52 (65)
T 1uxc_A 7 ARLAGVSRTTASYVINGKAKQYRVSDKT-VEKVMAVVREHNYHPNAV 52 (65)
T ss_dssp HHHHTSCHHHHHHHHHTCTTTTTCTTHH-HHHHHHHHHHHTCCCC--
T ss_pred HHHHCcCHHHHHHHHcCCCCCCCCCHHH-HHHHHHHHHHhCCCccHH
Confidence 3468999999999998877323456554 444444556688876554
No 46
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=32.01 E-value=1.1e+02 Score=25.85 Aligned_cols=69 Identities=14% Similarity=0.070 Sum_probs=37.1
Q ss_pred hhhHHHHHHHHHH-HhCCChhhh--------hhCCcccccCccccchhhHHHHHHHHHCCCCcCCCCchhhcccChhhHH
Q 043018 186 TKKIRELMDFFVN-EIGLKPLDI--------VRCPNLLLISLKKRVLPRWSVLQVLMSKNLLKKDIDFIQALIVTKPVFE 256 (300)
Q Consensus 186 ~~~l~~ki~fl~~-~~g~~~~~i--------~~~P~ll~~sle~ri~pR~~~l~~L~~~Gl~~~~~~l~~~l~~s~~~F~ 256 (300)
.+.++.-+..+.+ -||.+.+++ ..+|.+..-++....--| .+-+++...|+ .+.++.+++..+.+++.
T Consensus 47 p~~v~~iy~~~l~~~~g~~~e~~~~~~~~~~~~~pel~~~si~~l~~~r-~l~~~l~~~gv--~DFtl~DL~kP~~~Rt~ 123 (250)
T 2ve7_C 47 PEVLHMIYMRALQIVYGIRLEHFYMMPVNSGVMYPHLMEGFLPFSNLVT-HLDSFLPICRV--NDFETADILCPKAKRTS 123 (250)
T ss_dssp HHHHHHHHHHHHHHHHCCCSGGGSCCCSSCCCSCGGGGTTTHHHHHHHH-HHHHHHHHTTC--CCCCHHHHHSCCHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHhccchhhcccChhhHHHHHHHHHHHH-HHHHHHHHcCC--CCCcHhHhcCCchHHHH
Confidence 3445555555554 566665554 234444444443221111 12244455677 37888888888887665
Q ss_pred H
Q 043018 257 R 257 (300)
Q Consensus 257 ~ 257 (300)
.
T Consensus 124 ~ 124 (250)
T 2ve7_C 124 R 124 (250)
T ss_dssp H
T ss_pred H
Confidence 4
No 47
>2xzm_O RPS13E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_O 1ysh_E 3jyv_O* 1s1h_O
Probab=30.62 E-value=29 Score=27.14 Aligned_cols=48 Identities=13% Similarity=0.081 Sum_probs=34.9
Q ss_pred CCCCCChhHHHHHHHHhhccHHHHHHHHHHHHhCCCCHHHHHHHHHcC
Q 043018 131 GIEPTNFMFILAVRSMSVLSKATWEKKKDALMSFSWSEDEFYLAFKRQ 178 (300)
Q Consensus 131 G~~~~~~~~~~~~~~l~~~~~~~l~~kv~~l~~lG~s~~~i~~m~~~~ 178 (300)
|.+.+...+...+|.-+..+++.+++.|--|.+-|++.++|+.+++..
T Consensus 12 G~S~S~~P~~~~~P~W~~~~~eeVe~~I~klakkG~tpSqIG~iLRD~ 59 (153)
T 2xzm_O 12 GISGSALPFKRRSPKWLHMTPSTVVDLSVKLAKKGLTPSQIGVILRDQ 59 (153)
T ss_dssp CCCCCCCCSCCSCCSSCCCCHHHHHHHHHHHHHTTCCHHHHHHHHHHS
T ss_pred CccCCCCCCCCCCCccccCCHHHHHHHHHHHHHCCCCHHHhhhHHhhc
Confidence 555555555444443345788889999999999999999999888755
No 48
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.18 E-value=38 Score=23.58 Aligned_cols=39 Identities=13% Similarity=0.270 Sum_probs=27.5
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHcCCcccccchhhHHHHHHHHHHHh
Q 043018 155 EKKKDALMSFSWSEDEFYLAFKRQPMLMLSSTKKIRELMDFFVNEI 200 (300)
Q Consensus 155 ~~kv~~l~~lG~s~~~i~~m~~~~P~iL~~S~~~l~~ki~fl~~~~ 200 (300)
...|+-|.++||+.+++.+.++.+ -.++..-++||.+.+
T Consensus 30 e~~i~~L~~MGF~~~~a~~AL~~t-------~~nve~A~ewL~~~~ 68 (83)
T 2dai_A 30 EAALRQLTEMGFPENRATKALQLN-------HMSVPQAMEWLIEHA 68 (83)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHT-------TSCHHHHHHHHHHGG
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHh-------CCCHHHHHHHHHHCC
Confidence 455777888899998888776654 124667788887754
No 49
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=28.70 E-value=27 Score=22.13 Aligned_cols=45 Identities=11% Similarity=0.180 Sum_probs=27.6
Q ss_pred CcCCChhHHHHHHHhCCCCCCch-hHHHhhcCccccccccCcchhhhhHhhhhc
Q 043018 8 DPEKSLRPKIDYFESVGISGADL-PKFLCSNKQLLVVSLKSNIIPIFEFLKGLV 60 (300)
Q Consensus 8 ~~~~~l~~~l~~L~~lG~s~~~i-~~ii~~~P~lL~~s~e~~l~p~v~fL~~~g 60 (300)
.|+...++.|+-|.++||++.+- .+.+. .. ..++.-.++||.+.+
T Consensus 4 ~p~~~~~~~l~~L~~MGF~d~~~n~~AL~-------~~-~Gdv~~Ave~L~~~~ 49 (54)
T 2dah_A 4 GSSGHFQVQLEQLRSMGFLNREANLQALI-------AT-GGDVDAAVEKLRQSS 49 (54)
T ss_dssp SCCCSSHHHHHHHHHHTCCCHHHHHHHHH-------HH-TSCHHHHHHHHHHHS
T ss_pred ChhhhHHHHHHHHHHcCCCcHHHHHHHHH-------Hc-CCCHHHHHHHHHhCC
Confidence 45666778888888888877653 33332 11 245666677776543
No 50
>1b0n_B Protein (SINI protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1
Probab=28.00 E-value=70 Score=20.56 Aligned_cols=17 Identities=12% Similarity=-0.095 Sum_probs=13.4
Q ss_pred HHhCCCCHHHHHHHHHc
Q 043018 161 LMSFSWSEDEFYLAFKR 177 (300)
Q Consensus 161 l~~lG~s~~~i~~m~~~ 177 (300)
.+++|++.+||.+.+..
T Consensus 22 Ak~lGlsleEIrefL~l 38 (57)
T 1b0n_B 22 AKEANISPEEIRKYLLL 38 (57)
T ss_dssp HHHTTCCHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHH
Confidence 34799999999977763
No 51
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=27.68 E-value=1.1e+02 Score=19.40 Aligned_cols=17 Identities=12% Similarity=0.167 Sum_probs=10.0
Q ss_pred hhHHHHHHHHHHhCCCC
Q 043018 118 DLFKTMMDVIKKIGIEP 134 (300)
Q Consensus 118 ~~l~~~v~~L~~lG~~~ 134 (300)
+.....+..|.++||..
T Consensus 7 e~~a~~L~~L~eMGF~D 23 (54)
T 2cp8_A 7 GQTAALMAHLFEMGFCD 23 (54)
T ss_dssp TTHHHHHHHHHHHTCCC
T ss_pred HhhHHHHHHHHHcCCCc
Confidence 44555666666666643
No 52
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=27.33 E-value=37 Score=22.69 Aligned_cols=18 Identities=11% Similarity=0.311 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHhCCCCHH
Q 043018 152 ATWEKKKDALMSFSWSED 169 (300)
Q Consensus 152 ~~l~~kv~~l~~lG~s~~ 169 (300)
+.++..++-|.++||+..
T Consensus 17 ~~y~~ql~qL~~MGF~d~ 34 (67)
T 2dna_A 17 VRFSKEMECLQAMGFVNY 34 (67)
T ss_dssp HHTHHHHHHHHHHTCCCH
T ss_pred HHHHHHHHHHHHcCCCcH
Confidence 344555555555555433
No 53
>3j20_Q 30S ribosomal protein S15P/S13E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=26.65 E-value=33 Score=26.99 Aligned_cols=48 Identities=13% Similarity=-0.092 Sum_probs=34.2
Q ss_pred CCCCCChhHHHHHHHHhhccHHHHHHHHHHHHhCCCCHHHHHHHHHcC
Q 043018 131 GIEPTNFMFILAVRSMSVLSKATWEKKKDALMSFSWSEDEFYLAFKRQ 178 (300)
Q Consensus 131 G~~~~~~~~~~~~~~l~~~~~~~l~~kv~~l~~lG~s~~~i~~m~~~~ 178 (300)
|.+.+...+...+|.-+..+++.+++.|--|.+-|+++++|..+++..
T Consensus 10 G~S~S~~P~~~~~P~W~~~~~eev~~~i~klakkG~~pSqIG~~LRD~ 57 (158)
T 3j20_Q 10 GKSGSKRPPRTAPPIWVEYTVEEIENLVVKLRKEGYSTAMIGTILRDQ 57 (158)
T ss_dssp CCCCCCCCCCSSCCSSSCCCHHHHHHHHHHHHHHTCCHHHHHHHHHHT
T ss_pred CCCCCCCCCCCCCCCCcCCCHHHHHHHHHHHHHCCCCHHHhhHHHhcc
Confidence 555554444444443345678889999988999999999999887754
No 54
>2xzm_O RPS13E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_O 1ysh_E 3jyv_O* 1s1h_O
Probab=26.56 E-value=70 Score=24.95 Aligned_cols=34 Identities=12% Similarity=0.163 Sum_probs=20.7
Q ss_pred CCcccccchhhhhhhHHHHHHhcCCChHHHHHHhh
Q 043018 73 SSRIINCNIEKRLAPNVNTLRAHGVPEHLIAKLIM 107 (300)
Q Consensus 73 ~P~iL~~s~e~~l~~~v~~L~~lGl~~~~i~~ll~ 107 (300)
.|..+..+.++ ++..|--|..-|++.++|+-++.
T Consensus 24 ~P~W~~~~~ee-Ve~~I~klakkG~tpSqIG~iLR 57 (153)
T 2xzm_O 24 SPKWLHMTPST-VVDLSVKLAKKGLTPSQIGVILR 57 (153)
T ss_dssp CCSSCCCCHHH-HHHHHHHHHHTTCCHHHHHHHHH
T ss_pred CCccccCCHHH-HHHHHHHHHHCCCCHHHhhhHHh
Confidence 45566666554 66666666666666666666654
No 55
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.18 E-value=50 Score=22.34 Aligned_cols=41 Identities=12% Similarity=0.113 Sum_probs=29.6
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHcCCcccccchhhHHHHHHHHHHHhC
Q 043018 155 EKKKDALMSFSWSEDEFYLAFKRQPMLMLSSTKKIRELMDFFVNEIG 201 (300)
Q Consensus 155 ~~kv~~l~~lG~s~~~i~~m~~~~P~iL~~S~~~l~~ki~fl~~~~g 201 (300)
..+|+-|.++||+.+++.+.++.+-. ..+..-++||.+.+.
T Consensus 10 e~~v~~L~~MGF~~~~a~~AL~~t~n------~~ve~A~ewL~~~~~ 50 (74)
T 2dag_A 10 ESVIIQLVEMGFPMDACRKAVYYTGN------SGAEAAMNWVMSHMD 50 (74)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHHTS------CCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCC------CCHHHHHHHHHhCCC
Confidence 45677888999999998877664321 247788899987553
No 56
>3u5c_N S27A, YS15, 40S ribosomal protein S13; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_O 3o30_G 3o2z_G 3u5g_N 3iz6_O 3jyv_O* 1ysh_E 1s1h_O
Probab=26.12 E-value=36 Score=26.51 Aligned_cols=48 Identities=8% Similarity=0.050 Sum_probs=33.6
Q ss_pred CCCCCChhHHHHHHHHhhccHHHHHHHHHHHHhCCCCHHHHHHHHHcC
Q 043018 131 GIEPTNFMFILAVRSMSVLSKATWEKKKDALMSFSWSEDEFYLAFKRQ 178 (300)
Q Consensus 131 G~~~~~~~~~~~~~~l~~~~~~~l~~kv~~l~~lG~s~~~i~~m~~~~ 178 (300)
|.+.+...+...+|.-+..+++.+++.|--|.+-|++.++|+.+++..
T Consensus 10 G~S~S~~P~~~~~P~W~~~~~eeVe~~I~klakkG~tpSqIG~iLRD~ 57 (151)
T 3u5c_N 10 GISSSAIPYSRNAPAWFKLSSESVIEQIVKYARKGLTPSQIGVLLRDA 57 (151)
T ss_dssp CCCCCCCCSCCSCCSSCCSCHHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCcCCCHHHHHHHHHHHHHCCCCHHHhhhHHhcc
Confidence 455554444444443345678888999988999999999999777754
No 57
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A
Probab=25.77 E-value=63 Score=26.25 Aligned_cols=27 Identities=15% Similarity=0.381 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHcC
Q 043018 152 ATWEKKKDALMSFSWSEDEFYLAFKRQ 178 (300)
Q Consensus 152 ~~l~~kv~~l~~lG~s~~~i~~m~~~~ 178 (300)
...+.+|+-|.++||+++++...+.++
T Consensus 161 ~~~eekV~~l~~MGf~~~~a~~AL~~~ 187 (201)
T 3k9o_A 161 PEYTKKIENLCAMGFDRNAVIVALSSK 187 (201)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHHHT
T ss_pred chhHHHHHHHHHcCCCHHHHHHHHHHc
Confidence 356899999999999999999887766
No 58
>3d5l_A Regulatory protein RECX; PSI-II, NYSGXRC, DNA repair, 10123K, structural genomi protein structure initiative; 2.35A {Lactobacillus reuteri}
Probab=25.65 E-value=2.7e+02 Score=22.68 Aligned_cols=24 Identities=13% Similarity=0.147 Sum_probs=18.7
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHc
Q 043018 154 WEKKKDALMSFSWSEDEFYLAFKR 177 (300)
Q Consensus 154 l~~kv~~l~~lG~s~~~i~~m~~~ 177 (300)
.+.-+.||..-||+.+.|..++..
T Consensus 182 k~K~~~~L~rrGFs~~~I~~vl~~ 205 (221)
T 3d5l_A 182 EQKVQQGLTTKGFSSSVYEMIKDE 205 (221)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHTTC
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHh
Confidence 455568888999999999877654
No 59
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=25.43 E-value=50 Score=21.62 Aligned_cols=37 Identities=14% Similarity=0.245 Sum_probs=26.8
Q ss_pred HHHHHHHhCCCCHHHHHHHHHcCCcccccchhhHHHHHHHHHH
Q 043018 156 KKKDALMSFSWSEDEFYLAFKRQPMLMLSSTKKIRELMDFFVN 198 (300)
Q Consensus 156 ~kv~~l~~lG~s~~~i~~m~~~~P~iL~~S~~~l~~ki~fl~~ 198 (300)
..|+-|.++||+.+++.+.++.+-. .++..-++||.+
T Consensus 21 ~~i~~L~~MGF~~~~a~~AL~~t~~------~nve~A~ewL~~ 57 (64)
T 2cpw_A 21 SALDVLLSMGFPRARAQKALASTGG------RSVQTACDWLFS 57 (64)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHTTT------SCHHHHHHHHHS
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcCC------CCHHHHHHHHHh
Confidence 4577888999999998877775432 246777788765
No 60
>1wlq_C CDT1 protein; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_C*
Probab=24.58 E-value=1e+02 Score=25.21 Aligned_cols=67 Identities=12% Similarity=0.200 Sum_probs=55.7
Q ss_pred cchhhhhHhhhhccCChhHHHHHHhCCcccccchhhhhhhHHHHHHhcCCChHHHHHHhhhCCcceeech
Q 043018 48 NIIPIFEFLKGLVQTNVNLVHAVKQSSRIINCNIEKRLAPNVNTLRAHGVPEHLIAKLIMINPSSLIKRR 117 (300)
Q Consensus 48 ~l~p~v~fL~~~g~~~~~v~~il~~~P~iL~~s~e~~l~~~v~~L~~lGl~~~~i~~ll~~~P~ll~~~~ 117 (300)
.|-.+.+.|.++.-.-+.+..++...-...+++ ++++.|+-+..-.++.+.++++..-+|......-
T Consensus 31 ~LP~kY~~L~e~F~~ldtv~~ml~~R~~~~Tf~---~ik~~VE~~trr~F~~~hLaQIk~IyPeay~l~~ 97 (201)
T 1wlq_C 31 VLPYKYQVLVEMFHSMDTIVSMLHNRSETVTFA---KVKQGVQEMMRKRFEERNVGQIKTVYPMSYRFRQ 97 (201)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHTTCCCBHH---HHHHHHHHHHTSCCCHHHHHHHHHHCTTSEEEEE
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHcCCccccHH---HHHHHHHHHhcCCcCHHHHHHHHHhccCceEEEe
Confidence 456677777776666678889998888877777 5999999999999999999999999999887654
No 61
>3ayh_A DNA-directed RNA polymerase III subunit RPC9; transcription; 2.19A {Schizosaccharomyces pombe}
Probab=24.45 E-value=75 Score=24.16 Aligned_cols=45 Identities=11% Similarity=0.161 Sum_probs=33.6
Q ss_pred HHHHHHhCCcccccchhhhhhhHHHHHHhcCCChHHHHHHhhhCCc
Q 043018 66 LVHAVKQSSRIINCNIEKRLAPNVNTLRAHGVPEHLIAKLIMINPS 111 (300)
Q Consensus 66 v~~il~~~P~iL~~s~e~~l~~~v~~L~~lGl~~~~i~~ll~~~P~ 111 (300)
+.+.+.+.|.-...+.+ .++.-++.|+..|+++.++..++-..|.
T Consensus 59 ~l~YL~~~p~~~~q~~e-~i~~l~~~L~~~~Ltk~E~LqivNl~P~ 103 (136)
T 3ayh_A 59 ILKYLSSQGNCEGLTKE-RFLDCIAIFNEFELTKAEILVILNNKPS 103 (136)
T ss_dssp HHHHHHTTTCCTTCCHH-HHHHHHHTTTTTCCCHHHHHHHHHHCCC
T ss_pred HHHHHHhCCCccccCHH-HHHHHHHHHHhcCCCHHHHHHHhccCCC
Confidence 34455556655434544 5888888889999999999999999986
No 62
>1ixs_A Holliday junction DNA helicase RUVA; heterodimeric protein complex, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.20A {Thermus thermophilus} SCOP: a.5.1.1
Probab=24.41 E-value=87 Score=20.31 Aligned_cols=26 Identities=15% Similarity=0.073 Sum_probs=20.8
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHcC
Q 043018 153 TWEKKKDALMSFSWSEDEFYLAFKRQ 178 (300)
Q Consensus 153 ~l~~kv~~l~~lG~s~~~i~~m~~~~ 178 (300)
...+-++-|..+||+..|+.+++.+.
T Consensus 16 ~~~ea~~AL~aLGY~~~ea~kav~~v 41 (62)
T 1ixs_A 16 AAEEAVMALAALGFKEAQARAVVLDL 41 (62)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 34567788889999999999888764
No 63
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=24.03 E-value=41 Score=22.88 Aligned_cols=39 Identities=10% Similarity=0.337 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHhCCCC-HHHHHHHHHcCCcccccchhhHHHHHHHHH
Q 043018 152 ATWEKKKDALMSFSWS-EDEFYLAFKRQPMLMLSSTKKIRELMDFFV 197 (300)
Q Consensus 152 ~~l~~kv~~l~~lG~s-~~~i~~m~~~~P~iL~~S~~~l~~ki~fl~ 197 (300)
+.++.+|+-|.++||+ ++.+.+.++ ..--++..-++||.
T Consensus 27 ~~ye~qi~qL~eMGF~dr~~~~~AL~-------~t~Gnve~Ave~L~ 66 (74)
T 1vej_A 27 GRYQQELEELKALGFANRDANLQALV-------ATDGDIHAAIEMLL 66 (74)
T ss_dssp TTSHHHHHHHHHHTCCCHHHHHHHHH-------HTTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHH-------HhCCCHHHHHHHHH
Confidence 3456667777777764 444443333 22223455555554
No 64
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=23.11 E-value=65 Score=22.49 Aligned_cols=37 Identities=11% Similarity=0.199 Sum_probs=27.9
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHcCCcccccchhhHHHHHHHHHH
Q 043018 155 EKKKDALMSFSWSEDEFYLAFKRQPMLMLSSTKKIRELMDFFVN 198 (300)
Q Consensus 155 ~~kv~~l~~lG~s~~~i~~m~~~~P~iL~~S~~~l~~ki~fl~~ 198 (300)
.++|+-|.++||+++++.+.+..+ -..+..-++||..
T Consensus 22 ~~~I~qL~~MGF~~~~a~~AL~~~-------n~n~e~A~ewL~~ 58 (85)
T 2dkl_A 22 SRLIKQLTDMGFPREPAEEALKSN-------NMNLDQAMSALLE 58 (85)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHT-------TSCHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHc-------CCCHHHHHHHHHH
Confidence 678888999999999988666422 2347778888876
No 65
>2vz4_A Tipal, HTH-type transcriptional activator TIPA; transcription, resistance, antibiotic; 2.90A {Streptomyces lividans}
Probab=22.63 E-value=1.1e+02 Score=21.83 Aligned_cols=23 Identities=9% Similarity=0.001 Sum_probs=19.0
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHc
Q 043018 155 EKKKDALMSFSWSEDEFYLAFKR 177 (300)
Q Consensus 155 ~~kv~~l~~lG~s~~~i~~m~~~ 177 (300)
-..+..++++|++.++|..++..
T Consensus 48 l~~I~~lr~~G~sl~~I~~~l~~ 70 (108)
T 2vz4_A 48 LQQILFYRELGFPLDEVAALLDD 70 (108)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHTC
T ss_pred HHHHHHHHHCCCCHHHHHHHHhC
Confidence 45677788999999999998864
No 66
>4gfj_A Topoisomerase V; helix-hairpin-helix, DNA repair enzyme, DNA B isomerase; 2.91A {Methanopyrus kandleri AV19}
Probab=22.56 E-value=2.8e+02 Score=25.68 Aligned_cols=54 Identities=19% Similarity=0.211 Sum_probs=34.3
Q ss_pred cchhhhhHhhh-hccCChhHHHHHHhCCcccccchhhhhhhHHHHHHhcCCChHHHHHHh
Q 043018 48 NIIPIFEFLKG-LVQTNVNLVHAVKQSSRIINCNIEKRLAPNVNTLRAHGVPEHLIAKLI 106 (300)
Q Consensus 48 ~l~p~v~fL~~-~g~~~~~v~~il~~~P~iL~~s~e~~l~~~v~~L~~lGl~~~~i~~ll 106 (300)
++.|....|.+ -|+.+....+++.+++. ++.......+-|++-|+..+++.++.
T Consensus 462 tL~eqeamLtAIaGIGp~tAeRLLEkFGS-----Ve~Vm~AteDELRedGIGekqarrI~ 516 (685)
T 4gfj_A 462 SLVPGYASLISIRGIDRERAERLLKKYGG-----YSKVREAGVEELREDGLTDAQIRELK 516 (685)
T ss_dssp HHSTTHHHHHTSTTCCHHHHHHHHHHHTS-----HHHHHHSCHHHHHHTTCCHHHHHHHH
T ss_pred ccccceeeeeccCCCCHHHHHHHHHHhcC-----HHHHHhCCHHHHHHccccHHHHHHHh
Confidence 34455555665 45566666677777665 44445556666677888888877765
No 67
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=21.87 E-value=1.2e+02 Score=20.81 Aligned_cols=39 Identities=15% Similarity=0.068 Sum_probs=21.1
Q ss_pred hCCCCHHHHHHHHHcCCcccccchhhHHHHHHHHHHHhCCChhhhhh
Q 043018 163 SFSWSEDEFYLAFKRQPMLMLSSTKKIRELMDFFVNEIGLKPLDIVR 209 (300)
Q Consensus 163 ~lG~s~~~i~~m~~~~P~iL~~S~~~l~~ki~fl~~~~g~~~~~i~~ 209 (300)
.+|++...|.++..... .+.+.+.. +.+.+|+++++++.
T Consensus 46 ~~GiS~~tis~iE~G~~----~s~~~l~k----Ia~~L~v~~~~L~~ 84 (88)
T 3t76_A 46 AVGVSKSTFAKLGKNEN----VSLTVLLA----ICEYLNCDFGDIIE 84 (88)
T ss_dssp HHTCCHHHHHHHHTTCC----CCHHHHHH----HHHHHTCCGGGTCE
T ss_pred HHCcCHHHHHHHHcCCC----cCHHHHHH----HHHHHCcCHHHHhc
Confidence 45566666655555421 24444443 34457788877654
No 68
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=21.87 E-value=78 Score=20.63 Aligned_cols=39 Identities=13% Similarity=0.233 Sum_probs=28.2
Q ss_pred HHHHHHhCCCCHHHHHHHHHcCCcccccchhhHHHHHHHHHHHhC
Q 043018 157 KKDALMSFSWSEDEFYLAFKRQPMLMLSSTKKIRELMDFFVNEIG 201 (300)
Q Consensus 157 kv~~l~~lG~s~~~i~~m~~~~P~iL~~S~~~l~~ki~fl~~~~g 201 (300)
.|+-|.++||+.+++.+.++.+- -.++..-++||.+.+.
T Consensus 12 ~v~~L~~MGF~~~~a~~AL~~t~------~~nve~A~ewLl~~~~ 50 (64)
T 1whc_A 12 ALESLIEMGFPRGRAEKALALTG------NQGIEAAMDWLMEHED 50 (64)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHHT------SCCHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCHHHHHHHHHHhc------CCCHHHHHHHHHhCCC
Confidence 56778899999999887776321 1347788899987543
No 69
>2jml_A DNA binding domain/transcriptional regulator; anti-repressor, MERR, carotenogenesis; HET: DNA; NMR {Myxococcus xanthus}
Probab=21.57 E-value=64 Score=21.74 Aligned_cols=25 Identities=20% Similarity=0.212 Sum_probs=20.7
Q ss_pred HHHHHHHH-hCCCCHHHHHHHHHcCC
Q 043018 155 EKKKDALM-SFSWSEDEFYLAFKRQP 179 (300)
Q Consensus 155 ~~kv~~l~-~lG~s~~~i~~m~~~~P 179 (300)
-..+..++ +.|++.++|.+++...|
T Consensus 53 l~~I~~l~~~~G~sl~ei~~~l~~~~ 78 (81)
T 2jml_A 53 VRRVARLIQEEGLSVSEAIAQVKTEP 78 (81)
T ss_dssp HHHHHHHHHHTSTHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHccC
Confidence 45678888 99999999999887665
No 70
>3g5g_A Regulatory protein; transcriptional regulator, helix-turn-helix, restriction- modification, transcription regulator; 2.80A {Enterobacter SP} PDB: 3fya_A
Probab=21.24 E-value=2e+02 Score=19.97 Aligned_cols=24 Identities=0% Similarity=-0.079 Sum_probs=15.0
Q ss_pred HHHHHHHHHH-hCCCCHHHHHHHHH
Q 043018 153 TWEKKKDALM-SFSWSEDEFYLAFK 176 (300)
Q Consensus 153 ~l~~kv~~l~-~lG~s~~~i~~m~~ 176 (300)
.+-.++..++ ..|++.+++++.+.
T Consensus 28 ~ig~~lr~~R~~~gltq~elA~~~g 52 (99)
T 3g5g_A 28 KVSFVIKKIRLEKGMTQEDLAYKSN 52 (99)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHC
Confidence 4556666665 57777777765543
No 71
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=21.05 E-value=1.4e+02 Score=17.55 Aligned_cols=22 Identities=18% Similarity=0.181 Sum_probs=16.2
Q ss_pred HHHHHHHHHHhCCCCHHHHHHH
Q 043018 153 TWEKKKDALMSFSWSEDEFYLA 174 (300)
Q Consensus 153 ~l~~kv~~l~~lG~s~~~i~~m 174 (300)
.++.-++-+++-||+++++..+
T Consensus 4 alkselqalkkegfspeelaal 25 (48)
T 1g6u_A 4 ALKSELQALKKEGFSPEELAAL 25 (48)
T ss_dssp HHHHHHHHHHHTTCSHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHH
Confidence 3556677788889999987643
No 72
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=20.80 E-value=1.7e+02 Score=18.38 Aligned_cols=24 Identities=8% Similarity=0.109 Sum_probs=14.1
Q ss_pred HHHHHHHHHH-hCCCCHHHHHHHHH
Q 043018 153 TWEKKKDALM-SFSWSEDEFYLAFK 176 (300)
Q Consensus 153 ~l~~kv~~l~-~lG~s~~~i~~m~~ 176 (300)
.+..++..++ ..|++.+++.+.+.
T Consensus 13 ~~~~~l~~~r~~~g~s~~~lA~~~g 37 (74)
T 1y7y_A 13 KFGQRLRELRTAKGLSQETLAFLSG 37 (74)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHC
Confidence 3445555555 56777777665543
No 73
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=20.74 E-value=1.2e+02 Score=19.34 Aligned_cols=16 Identities=19% Similarity=0.445 Sum_probs=10.0
Q ss_pred HHHHhCCChhhhhhCC
Q 043018 196 FVNEIGLKPLDIVRCP 211 (300)
Q Consensus 196 l~~~~g~~~~~i~~~P 211 (300)
+.+.+|+++++++..+
T Consensus 56 ia~~l~~~~~~l~~~~ 71 (78)
T 3b7h_A 56 VCGTLGISVHDFFDFP 71 (78)
T ss_dssp HHHHHTCCHHHHTCST
T ss_pred HHHHcCCCHHHHhcCC
Confidence 3445788887776443
No 74
>1vke_A Carboxymuconolactone decarboxylase family protein; TM1620, structural genomics, JC protein structure initiative, PSI; 1.56A {Thermotoga maritima} SCOP: a.152.1.2
Probab=20.31 E-value=2.7e+02 Score=20.73 Aligned_cols=28 Identities=11% Similarity=0.020 Sum_probs=22.2
Q ss_pred cHHHHHHHHHHHHhCCCCHHHHHHHHHc
Q 043018 150 SKATWEKKKDALMSFSWSEDEFYLAFKR 177 (300)
Q Consensus 150 ~~~~l~~kv~~l~~lG~s~~~i~~m~~~ 177 (300)
...-+...+....+.|.++++|..++.-
T Consensus 71 C~yCl~~H~~~A~~~G~t~eeI~eal~~ 98 (133)
T 1vke_A 71 CDDCIRYHLVRCVQEGASDEEIFEALDI 98 (133)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 3456777788888999999999888753
No 75
>3u5c_N S27A, YS15, 40S ribosomal protein S13; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_O 3o30_G 3o2z_G 3u5g_N 3iz6_O 3jyv_O* 1ysh_E 1s1h_O
Probab=20.26 E-value=76 Score=24.70 Aligned_cols=34 Identities=12% Similarity=0.177 Sum_probs=20.5
Q ss_pred CCcccccchhhhhhhHHHHHHhcCCChHHHHHHhh
Q 043018 73 SSRIINCNIEKRLAPNVNTLRAHGVPEHLIAKLIM 107 (300)
Q Consensus 73 ~P~iL~~s~e~~l~~~v~~L~~lGl~~~~i~~ll~ 107 (300)
.|..+..+.++ ++..|--|..-|++.++|+-++.
T Consensus 22 ~P~W~~~~~ee-Ve~~I~klakkG~tpSqIG~iLR 55 (151)
T 3u5c_N 22 APAWFKLSSES-VIEQIVKYARKGLTPSQIGVLLR 55 (151)
T ss_dssp CCSSCCSCHHH-HHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CCCCcCCCHHH-HHHHHHHHHHCCCCHHHhhhHHh
Confidence 45566666554 66666666666666666666554
No 76
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=20.17 E-value=80 Score=21.88 Aligned_cols=40 Identities=18% Similarity=0.259 Sum_probs=28.6
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHcCCcccccchhhHHHHHHHHHHHh
Q 043018 155 EKKKDALMSFSWSEDEFYLAFKRQPMLMLSSTKKIRELMDFFVNEI 200 (300)
Q Consensus 155 ~~kv~~l~~lG~s~~~i~~m~~~~P~iL~~S~~~l~~ki~fl~~~~ 200 (300)
...|+-|.++||+.+.+.+.+...- -.++..-++||...+
T Consensus 30 e~~v~~L~~MGF~~~~a~~AL~~t~------n~n~e~A~ewL~~h~ 69 (84)
T 1vek_A 30 EEIVAQLVSMGFSQLHCQKAAINTS------NAGVEEAMNWLLSHM 69 (84)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHTT------TCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHc------CCCHHHHHHHHHhCC
Confidence 4567888899999998886655331 124777889998754
No 77
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=20.16 E-value=2e+02 Score=19.73 Aligned_cols=35 Identities=11% Similarity=0.169 Sum_probs=28.7
Q ss_pred HhCCCCHHHHHHHHHcCCcccccchhhHHHHHHHHHHHhCCC
Q 043018 162 MSFSWSEDEFYLAFKRQPMLMLSSTKKIRELMDFFVNEIGLK 203 (300)
Q Consensus 162 ~~lG~s~~~i~~m~~~~P~iL~~S~~~l~~ki~fl~~~~g~~ 203 (300)
..-|++..||. ..|++|..+++..+.-+.+.+|+.
T Consensus 41 ~~~G~s~~eIA-------~~L~iS~~TV~~~~~~i~~Klgv~ 75 (90)
T 3ulq_B 41 VEKGFTNQEIA-------DALHLSKRSIEYSLTSIFNKLNVG 75 (90)
T ss_dssp HHTTCCHHHHH-------HHHTCCHHHHHHHHHHHHHHTTCS
T ss_pred HHcCCCHHHHH-------HHHCcCHHHHHHHHHHHHHHHCCC
Confidence 34899999999 667788888888888888888875
Done!