Query 043018
Match_columns 300
No_of_seqs 191 out of 1141
Neff 8.3
Searched_HMMs 13730
Date Mon Mar 25 21:06:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043018.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/043018hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1oqya1 a.5.2.1 (A:160-200) DN 75.9 0.96 7E-05 25.9 2.6 26 153-178 3-28 (41)
2 d2hsga1 a.35.1.5 (A:2-58) Gluc 56.8 11 0.00078 22.8 4.9 41 92-135 8-48 (57)
3 d2g3qa1 a.5.2.1 (A:1339-1381) 52.7 4.4 0.00032 23.1 2.2 24 157-180 7-30 (43)
4 d1qpza1 a.35.1.5 (A:2-58) Puri 50.5 18 0.0013 21.7 5.2 41 92-135 7-47 (57)
5 d1uxda_ a.35.1.5 (A:) Fructose 49.6 12 0.00085 22.8 4.2 45 92-136 7-51 (59)
6 d1wiva_ a.5.2.1 (A:) Ubiquitin 47.1 13 0.00097 23.6 4.4 37 155-198 30-66 (73)
7 d1vg5a_ a.5.2.1 (A:) Rhomboid 46.6 5.3 0.00038 25.7 2.2 37 155-198 30-66 (73)
8 d1cuka1 a.5.1.1 (A:156-203) DN 45.2 25 0.0018 20.3 5.1 35 153-188 4-38 (48)
9 d1efaa1 a.35.1.5 (A:2-60) Lac 44.2 27 0.002 21.1 5.3 42 92-136 9-50 (59)
10 d1a9xa1 a.92.1.1 (A:403-555) C 40.9 39 0.0028 24.5 6.8 81 94-204 42-122 (153)
11 d1wjia_ a.5.2.1 (A:) Tudor dom 38.9 14 0.001 22.7 3.4 39 155-200 10-48 (63)
12 d1y7ya1 a.35.1.3 (A:5-73) Rest 38.5 34 0.0025 20.7 5.4 26 154-179 10-36 (69)
13 d2r1jl1 a.35.1.2 (L:3-68) P22 36.7 26 0.0019 21.0 4.6 51 154-208 4-63 (66)
14 d1ttea1 a.5.2.1 (A:161-215) Ub 36.2 15 0.0011 22.0 2.9 22 157-178 12-33 (55)
15 d1wgna_ a.5.2.1 (A:) Ubiquitin 36.1 7.4 0.00054 24.1 1.6 38 155-199 20-57 (63)
16 d1y9qa1 a.35.1.8 (A:4-82) Prob 36.0 44 0.0032 20.7 5.8 29 152-180 7-36 (79)
17 d2b5aa1 a.35.1.3 (A:1-77) Regu 35.3 44 0.0032 20.6 5.7 27 154-180 11-38 (77)
18 d1zcza1 c.24.1.3 (A:1-157) IMP 32.2 11 0.00083 27.8 2.4 34 18-53 36-69 (157)
19 d2dnaa1 a.5.2.1 (A:12-61) Ubiq 30.2 5.5 0.0004 23.6 0.1 18 118-135 6-23 (50)
20 d2croa_ a.35.1.2 (A:) cro 434 30.0 19 0.0014 21.7 2.9 22 154-175 4-26 (65)
21 d1vkea_ a.152.1.2 (A:) Hypothe 28.6 78 0.0057 21.5 6.5 27 150-176 56-82 (118)
22 d2daha1 a.5.2.1 (A:8-48) Ubiqu 27.5 5.1 0.00037 22.7 -0.3 14 122-135 4-17 (41)
23 d1b0na2 a.35.1.3 (A:1-68) SinR 27.5 59 0.0043 19.4 5.2 14 196-209 50-63 (68)
24 d1q08a_ a.6.1.3 (A:) Transcrip 27.5 25 0.0018 23.2 3.4 21 156-176 4-27 (94)
25 d2hsga1 a.35.1.5 (A:2-58) Gluc 26.6 60 0.0044 19.2 5.6 43 161-207 8-50 (57)
26 d1k6ya1 a.4.10.1 (A:1-46) N-te 25.7 20 0.0015 20.6 2.2 28 154-181 15-43 (46)
27 d1pbya1 a.3.1.7 (A:1-85) Quino 25.7 56 0.0041 21.0 4.9 44 149-207 31-74 (85)
28 d2ouwa1 a.152.1.4 (A:1-134) Hy 25.6 96 0.007 21.2 8.2 107 85-207 18-131 (134)
29 d1g8ma1 c.24.1.3 (A:4-200) IMP 25.0 45 0.0033 25.3 4.8 59 11-90 13-71 (197)
30 d1tc3c_ a.4.1.2 (C:) Transposa 24.7 44 0.0032 19.2 3.5 25 154-178 10-34 (51)
31 d2af7a1 a.152.1.2 (A:1-119) Ga 24.7 52 0.0038 22.5 4.8 27 150-176 69-95 (119)
32 d2prra1 a.152.1.3 (A:5-194) Un 24.4 21 0.0016 26.5 2.8 43 155-206 138-180 (190)
33 d1g8ma1 c.24.1.3 (A:4-200) IMP 24.1 27 0.002 26.6 3.3 110 16-129 35-158 (197)
34 d1jmxa1 a.3.1.7 (A:2-85) Quino 24.0 62 0.0045 20.7 4.8 46 149-210 31-77 (84)
35 d1r69a_ a.35.1.2 (A:) 434 C1 r 23.8 54 0.004 19.2 4.3 22 155-176 3-25 (63)
36 d1oqya2 a.5.2.1 (A:317-360) DN 21.1 20 0.0015 20.3 1.5 17 158-174 8-24 (44)
37 d1z96a1 a.5.2.1 (A:295-332) UB 21.0 57 0.0041 16.9 3.6 23 154-176 2-24 (38)
No 1
>d1oqya1 a.5.2.1 (A:160-200) DNA repair protein Hhr23a {Human (Homo sapiens) [TaxId: 9606]}
Probab=75.95 E-value=0.96 Score=25.94 Aligned_cols=26 Identities=15% Similarity=0.358 Sum_probs=20.4
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHcC
Q 043018 153 TWEKKKDALMSFSWSEDEFYLAFKRQ 178 (300)
Q Consensus 153 ~l~~kv~~l~~lG~s~~~i~~m~~~~ 178 (300)
..+++|+-|.++||+++++.+.+++.
T Consensus 3 ~~e~~i~~L~~MGF~~~~a~~AL~~~ 28 (41)
T d1oqya1 3 EYETMLTEIMSMGYERERVVAALRAS 28 (41)
T ss_dssp THHHHHHHHHTTTCCSHHHHHHHHHS
T ss_pred hHHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 45777888889999998888777654
No 2
>d2hsga1 a.35.1.5 (A:2-58) Glucose-resistance amylase regulator CcpA, N-terminal domain {Bacillus megaterium [TaxId: 1404]}
Probab=56.85 E-value=11 Score=22.83 Aligned_cols=41 Identities=20% Similarity=0.428 Sum_probs=31.7
Q ss_pred HHhcCCChHHHHHHhhhCCcceeechhhHHHHHHHHHHhCCCCC
Q 043018 92 LRAHGVPEHLIAKLIMINPSSLIKRRDLFKTMMDVIKKIGIEPT 135 (300)
Q Consensus 92 L~~lGl~~~~i~~ll~~~P~ll~~~~~~l~~~v~~L~~lG~~~~ 135 (300)
=+..|++..-+.+++...|.+ +.+.-+...+..+++|+.++
T Consensus 8 A~~agvS~~TVSr~Ln~~~~V---s~~tr~rV~~aa~~lgY~pn 48 (57)
T d2hsga1 8 AREASVSMATVSRVVNGNPNV---KPSTRKKVLETIERLGYRPN 48 (57)
T ss_dssp HHHTTSCHHHHHHHHTTCTTS---CHHHHHHHHHHHHHHTCCSC
T ss_pred HHHHCcCHHHHHHHhCCCCcC---CHHHHHHHHHHHHHHCcCCC
Confidence 346899999999999887753 56666666677788998876
No 3
>d2g3qa1 a.5.2.1 (A:1339-1381) Endocytic protein Ede1, YBL047C {Saccharomyces cerevisiae [TaxId: 4932]}
Probab=52.70 E-value=4.4 Score=23.06 Aligned_cols=24 Identities=17% Similarity=0.239 Sum_probs=18.9
Q ss_pred HHHHHHhCCCCHHHHHHHHHcCCc
Q 043018 157 KKDALMSFSWSEDEFYLAFKRQPM 180 (300)
Q Consensus 157 kv~~l~~lG~s~~~i~~m~~~~P~ 180 (300)
-|+-|.++||++++..+.+.++-.
T Consensus 7 ai~eL~~MGF~e~~A~~AL~k~~w 30 (43)
T d2g3qa1 7 AVEELSGMGFTEEEAHNALEKCNW 30 (43)
T ss_dssp HHHHHHTTTSCHHHHHHHHHHHTS
T ss_pred HHHHHHhcCCCHHHHHHHHHHcCC
Confidence 466778899999999988877643
No 4
>d1qpza1 a.35.1.5 (A:2-58) Purine repressor (PurR), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=50.48 E-value=18 Score=21.73 Aligned_cols=41 Identities=12% Similarity=0.188 Sum_probs=31.6
Q ss_pred HHhcCCChHHHHHHhhhCCcceeechhhHHHHHHHHHHhCCCCC
Q 043018 92 LRAHGVPEHLIAKLIMINPSSLIKRRDLFKTMMDVIKKIGIEPT 135 (300)
Q Consensus 92 L~~lGl~~~~i~~ll~~~P~ll~~~~~~l~~~v~~L~~lG~~~~ 135 (300)
=+..|++..-+.+++...|.+ +++.-+...+..+++|+.++
T Consensus 7 A~~agVS~sTVSr~ln~~~~v---s~~tr~rV~~~a~~lgY~pn 47 (57)
T d1qpza1 7 AKRANVSTTTVSHVINKTRFV---AEETRNAVWAAIKELHYSPS 47 (57)
T ss_dssp HHHHTSCHHHHHHHHHTCSCC---CHHHHHHHHHHHHHHTCCCC
T ss_pred HHHHCcCHHHHHHHHCCCCcc---CHHHHHHHHHHHHHHCCCCC
Confidence 346899999999999877753 56666667777788999887
No 5
>d1uxda_ a.35.1.5 (A:) Fructose repressor (FruR), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=49.64 E-value=12 Score=22.80 Aligned_cols=45 Identities=16% Similarity=0.203 Sum_probs=33.9
Q ss_pred HHhcCCChHHHHHHhhhCCcceeechhhHHHHHHHHHHhCCCCCC
Q 043018 92 LRAHGVPEHLIAKLIMINPSSLIKRRDLFKTMMDVIKKIGIEPTN 136 (300)
Q Consensus 92 L~~lGl~~~~i~~ll~~~P~ll~~~~~~l~~~v~~L~~lG~~~~~ 136 (300)
=+..|++..-+.+++...|.-...+++.-+...+..+++|+.++.
T Consensus 7 A~~agvS~sTVSrvLn~~~~~~~vs~~tr~rV~~~a~~lgY~pn~ 51 (59)
T d1uxda_ 7 ARLAGVSRTTASYVINGKAKQYRVSDKTVEKVMAVVREHNYHPNA 51 (59)
T ss_dssp HHHHTSCTTHHHHHHHTCGGGTTCTTTTHHHHHHHHHHHTCCCCS
T ss_pred HHHHCcCHHHHHHHHcCCCCcCcCCHHHHHHHHHHHHHHCCCcCH
Confidence 345799999999999877764434666667777778889998763
No 6
>d1wiva_ a.5.2.1 (A:) Ubiquitin isopeptidase T {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=47.06 E-value=13 Score=23.59 Aligned_cols=37 Identities=30% Similarity=0.433 Sum_probs=25.7
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHcCCcccccchhhHHHHHHHHHH
Q 043018 155 EKKKDALMSFSWSEDEFYLAFKRQPMLMLSSTKKIRELMDFFVN 198 (300)
Q Consensus 155 ~~kv~~l~~lG~s~~~i~~m~~~~P~iL~~S~~~l~~ki~fl~~ 198 (300)
...|+-|.++||+++++.+.++.+- .++..-++||..
T Consensus 30 ~~~i~~L~~MGF~~~~a~~AL~~~~-------~n~e~Av~~Lls 66 (73)
T d1wiva_ 30 QSSVDTLLSFGFAEDVARKALKASG-------GDIEKATDWVFN 66 (73)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHTT-------SCHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHcC-------CCHHHHHHHHHc
Confidence 4567777888888888887766552 246667777765
No 7
>d1vg5a_ a.5.2.1 (A:) Rhomboid family protein At3g58460 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=46.64 E-value=5.3 Score=25.67 Aligned_cols=37 Identities=8% Similarity=0.293 Sum_probs=24.6
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHcCCcccccchhhHHHHHHHHHH
Q 043018 155 EKKKDALMSFSWSEDEFYLAFKRQPMLMLSSTKKIRELMDFFVN 198 (300)
Q Consensus 155 ~~kv~~l~~lG~s~~~i~~m~~~~P~iL~~S~~~l~~ki~fl~~ 198 (300)
++.|+-|.++||++++..+.+..+ -.++..-++||..
T Consensus 30 ee~i~~L~~MGF~~~~a~~AL~~~-------~~n~e~A~~~Ll~ 66 (73)
T d1vg5a_ 30 EEQIQKLVAMGFDRTQVEVALAAA-------DDDLTVAVEILMS 66 (73)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHH-------TSCHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHh-------CCCHHHHHHHHHh
Confidence 556777888888888877655542 2246666777754
No 8
>d1cuka1 a.5.1.1 (A:156-203) DNA helicase RuvA subunit, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=45.19 E-value=25 Score=20.30 Aligned_cols=35 Identities=9% Similarity=0.057 Sum_probs=25.0
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHcCCcccccchhh
Q 043018 153 TWEKKKDALMSFSWSEDEFYLAFKRQPMLMLSSTKK 188 (300)
Q Consensus 153 ~l~~kv~~l~~lG~s~~~i~~m~~~~P~iL~~S~~~ 188 (300)
...+-+.-|..+|+++.|+.+++.+... =..|.|.
T Consensus 4 ~~~eAi~AL~~LGY~~~ea~~av~~i~~-~~~s~E~ 38 (48)
T d1cuka1 4 AEQEAVARLVALGYKPQEASRMVSKIAR-PDASSET 38 (48)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHSCC-SSCCHHH
T ss_pred hHHHHHHHHHHcCCCHHHHHHHHHHhcC-CCCCHHH
Confidence 4566778888999999999999887643 1334444
No 9
>d1efaa1 a.35.1.5 (A:2-60) Lac repressor (LacR), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=44.17 E-value=27 Score=21.07 Aligned_cols=42 Identities=7% Similarity=0.143 Sum_probs=32.0
Q ss_pred HHhcCCChHHHHHHhhhCCcceeechhhHHHHHHHHHHhCCCCCC
Q 043018 92 LRAHGVPEHLIAKLIMINPSSLIKRRDLFKTMMDVIKKIGIEPTN 136 (300)
Q Consensus 92 L~~lGl~~~~i~~ll~~~P~ll~~~~~~l~~~v~~L~~lG~~~~~ 136 (300)
=+..|++..-+.+++...|.+ +++.-+...+..+++|+.++.
T Consensus 9 A~~agvS~sTVSr~l~~~~~v---s~~tr~rI~~~a~~lgY~pn~ 50 (59)
T d1efaa1 9 AEYAGVSYQTVSRVVNQASHV---SAKTREKVEAAMAELNYIPNR 50 (59)
T ss_dssp HHTTTSCHHHHHHHHTTCSSC---CTHHHHHHHHHHHHHTCCCCH
T ss_pred HHHHCCCHHHHHHHHCCCCcC---CHHHHHHHHHHHHHHCCCcCH
Confidence 345899999999999776653 566667777777889988773
No 10
>d1a9xa1 a.92.1.1 (A:403-555) Carbamoyl phosphate synthetase, large subunit connection domain {Escherichia coli [TaxId: 562]}
Probab=40.91 E-value=39 Score=24.50 Aligned_cols=81 Identities=16% Similarity=0.228 Sum_probs=47.3
Q ss_pred hcCCChHHHHHHhhhCCcceeechhhHHHHHHHHHHhCCCCCChhHHHHHHHHhhccHHHHHHHHHHHHhCCCCHHHHHH
Q 043018 94 AHGVPEHLIAKLIMINPSSLIKRRDLFKTMMDVIKKIGIEPTNFMFILAVRSMSVLSKATWEKKKDALMSFSWSEDEFYL 173 (300)
Q Consensus 94 ~lGl~~~~i~~ll~~~P~ll~~~~~~l~~~v~~L~~lG~~~~~~~~~~~~~~l~~~~~~~l~~kv~~l~~lG~s~~~i~~ 173 (300)
..|++.++|..+=.-.|+.|.. .+++...=+.++..|.+. .+. .-+.-.+++|||..+|..
T Consensus 42 r~G~sveeI~elTkID~WFL~q-i~~Iv~~E~~l~~~~~~~--------------l~~----~~l~~aK~~GFSD~~ia~ 102 (153)
T d1a9xa1 42 RAGLSVDGVFNLTNIDRWFLVQ-IEELVRLEEKVAEVGITG--------------LNA----DFLRQLKRKGFADARLAK 102 (153)
T ss_dssp HTTBCHHHHHHHHCCCHHHHHH-HHHHHHHHHHHHHHTGGG--------------CCH----HHHHHHHHTTCCHHHHHH
T ss_pred HcCCCHHHHHHhhCeeeHHHHH-HHHHHHHHhhhhhcCccc--------------CCH----HHHHHHHHcCCCHHHHHH
Confidence 3699999999988888877632 222222222233333211 111 123456689999999994
Q ss_pred HHHcCCcccccchhhHHHHHHHHHHHhCCCh
Q 043018 174 AFKRQPMLMLSSTKKIRELMDFFVNEIGLKP 204 (300)
Q Consensus 174 m~~~~P~iL~~S~~~l~~ki~fl~~~~g~~~ 204 (300)
+.+.+.+.++. +++..|+-+
T Consensus 103 -------l~~~~e~~vr~----~R~~~~i~p 122 (153)
T d1a9xa1 103 -------LAGVREAEIRK----LRDQYDLHP 122 (153)
T ss_dssp -------HTTSCHHHHHH----HHHHTTCCC
T ss_pred -------HHcCcHHHHHH----HHHHccCCC
Confidence 45566665544 455677654
No 11
>d1wjia_ a.5.2.1 (A:) Tudor domain containing protein 3, TDRD3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=38.86 E-value=14 Score=22.65 Aligned_cols=39 Identities=10% Similarity=0.208 Sum_probs=28.9
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHcCCcccccchhhHHHHHHHHHHHh
Q 043018 155 EKKKDALMSFSWSEDEFYLAFKRQPMLMLSSTKKIRELMDFFVNEI 200 (300)
Q Consensus 155 ~~kv~~l~~lG~s~~~i~~m~~~~P~iL~~S~~~l~~ki~fl~~~~ 200 (300)
...|+-|.++||+.+...+.+..+- ..+..-++||.+..
T Consensus 10 ~~~v~~L~~MGF~~~~a~~AL~~~~-------~~~e~A~~wL~~~~ 48 (63)
T d1wjia_ 10 EKALKHITEMGFSKEASRQALMDNG-------NNLEAALNVLLTSN 48 (63)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHTT-------SCHHHHHHHHHHHS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhC-------CCHHHHHHHHHHCC
Confidence 4567788899999999887776542 25777888888753
No 12
>d1y7ya1 a.35.1.3 (A:5-73) Restriction-modification controller protein C.AhdI {Aeromonas hydrophila [TaxId: 644]}
Probab=38.46 E-value=34 Score=20.73 Aligned_cols=26 Identities=8% Similarity=0.072 Sum_probs=17.2
Q ss_pred HHHHHHHHH-hCCCCHHHHHHHHHcCC
Q 043018 154 WEKKKDALM-SFSWSEDEFYLAFKRQP 179 (300)
Q Consensus 154 l~~kv~~l~-~lG~s~~~i~~m~~~~P 179 (300)
+-.++.-++ +.|+|.+++++.+.-.+
T Consensus 10 ~g~~ik~~R~~~gltq~~lA~~~gis~ 36 (69)
T d1y7ya1 10 FGQRLRELRTAKGLSQETLAFLSGLDR 36 (69)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHTCCH
T ss_pred HHHHHHHHHHHcCCCHHHHHhHhCCCH
Confidence 556666666 68888888776654433
No 13
>d2r1jl1 a.35.1.2 (L:3-68) P22 C2 repressor, DNA-binding domain {Salmonella bacteriophage P22 [TaxId: 10754]}
Probab=36.71 E-value=26 Score=20.99 Aligned_cols=51 Identities=4% Similarity=0.014 Sum_probs=25.2
Q ss_pred HHHHHHHHH-hCCCCHHHHHHHHHcCCccc--------ccchhhHHHHHHHHHHHhCCChhhhh
Q 043018 154 WEKKKDALM-SFSWSEDEFYLAFKRQPMLM--------LSSTKKIRELMDFFVNEIGLKPLDIV 208 (300)
Q Consensus 154 l~~kv~~l~-~lG~s~~~i~~m~~~~P~iL--------~~S~~~l~~ki~fl~~~~g~~~~~i~ 208 (300)
+-.++..++ +.|++.+++++.+.-.++-+ .-+.+.+.. +.+.+|++.++++
T Consensus 4 ig~rik~~R~~~g~tq~~lA~~~gvs~~~i~~~e~g~~~p~~~~l~~----ia~~l~v~~~~Ll 63 (66)
T d2r1jl1 4 MGERIRARRKKLKIRQAALGKMVGVSNVAISQWERSETEPNGENLLA----LSKALQCSPDYLL 63 (66)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHTTSSCCBHHHHHH----HHHHTTSCHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHcCCCCCCHHHHHH----HHHHhCCCHHHHh
Confidence 344555555 56666666665554333322 112233222 3345677777664
No 14
>d1ttea1 a.5.2.1 (A:161-215) Ubiquitin-protein ligase ubc1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=36.20 E-value=15 Score=21.99 Aligned_cols=22 Identities=18% Similarity=0.250 Sum_probs=15.8
Q ss_pred HHHHHHhCCCCHHHHHHHHHcC
Q 043018 157 KKDALMSFSWSEDEFYLAFKRQ 178 (300)
Q Consensus 157 kv~~l~~lG~s~~~i~~m~~~~ 178 (300)
-|+-|.++||+.+.+...++|.
T Consensus 12 ~V~~f~~mGF~rdKvI~VLrrl 33 (55)
T d1ttea1 12 LIDEFESQGFEKDKIVEVLRRL 33 (55)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHS
T ss_pred HHHHHHHcCCCchhHHHHHHHh
Confidence 4666777888888777777653
No 15
>d1wgna_ a.5.2.1 (A:) Ubiquitin-associated protein 1, UBAP1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=36.05 E-value=7.4 Score=24.13 Aligned_cols=38 Identities=13% Similarity=0.389 Sum_probs=28.7
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHcCCcccccchhhHHHHHHHHHHH
Q 043018 155 EKKKDALMSFSWSEDEFYLAFKRQPMLMLSSTKKIRELMDFFVNE 199 (300)
Q Consensus 155 ~~kv~~l~~lG~s~~~i~~m~~~~P~iL~~S~~~l~~ki~fl~~~ 199 (300)
++.|+-|.++||+++++.+.+..+ -.++..-++||...
T Consensus 20 e~~v~~L~~MGF~~~~a~~AL~~~-------~~n~e~A~~~Lls~ 57 (63)
T d1wgna_ 20 RQCVETVVNMGYSYECVLRAMKKK-------GENIEQILDYLFAH 57 (63)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHH-------CSCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHc-------CCCHHHHHHHHHhC
Confidence 677899999999999988776643 22477778888763
No 16
>d1y9qa1 a.35.1.8 (A:4-82) Probable transcriptional regulator VC1968, N-terminal domain {Vibrio cholerae [TaxId: 666]}
Probab=36.00 E-value=44 Score=20.66 Aligned_cols=29 Identities=14% Similarity=-0.098 Sum_probs=19.3
Q ss_pred HHHHHHHHHHH-hCCCCHHHHHHHHHcCCc
Q 043018 152 ATWEKKKDALM-SFSWSEDEFYLAFKRQPM 180 (300)
Q Consensus 152 ~~l~~kv~~l~-~lG~s~~~i~~m~~~~P~ 180 (300)
..+-.++.-++ ..|+|.+++.+.+.-.++
T Consensus 7 ~~ig~~lr~~R~~~g~sq~~lA~~~gis~~ 36 (79)
T d1y9qa1 7 SQIANQLKNLRKSRGLSLDATAQLTGVSKA 36 (79)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHSSCHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHCcchh
Confidence 34566777776 688888888866544443
No 17
>d2b5aa1 a.35.1.3 (A:1-77) Regulatory protein C.BclI {Bacillus caldolyticus [TaxId: 1394]}
Probab=35.32 E-value=44 Score=20.56 Aligned_cols=27 Identities=7% Similarity=-0.018 Sum_probs=16.2
Q ss_pred HHHHHHHHH-hCCCCHHHHHHHHHcCCc
Q 043018 154 WEKKKDALM-SFSWSEDEFYLAFKRQPM 180 (300)
Q Consensus 154 l~~kv~~l~-~lG~s~~~i~~m~~~~P~ 180 (300)
+-.++.-++ ..|+|.+++++.+.-.++
T Consensus 11 ~g~~ik~~R~~~gltq~~lA~~~gis~~ 38 (77)
T d2b5aa1 11 FGRTLKKIRTQKGVSQEELADLAGLHRT 38 (77)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHTCCHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHCCCHH
Confidence 455566665 577777777755544443
No 18
>d1zcza1 c.24.1.3 (A:1-157) IMP cyclohydrolase domain of bifunctional purine biosynthesis enzyme ATIC {Thermotoga maritima [TaxId: 2336]}
Probab=32.24 E-value=11 Score=27.82 Aligned_cols=34 Identities=24% Similarity=0.390 Sum_probs=15.2
Q ss_pred HHHHhCCCCCCchhHHHhhcCccccccccCcchhhh
Q 043018 18 DYFESVGISGADLPKFLCSNKQLLVVSLKSNIIPIF 53 (300)
Q Consensus 18 ~~L~~lG~s~~~i~~ii~~~P~lL~~s~e~~l~p~v 53 (300)
+||++.|++-.+|.+ ++.+|.+|.-.+. +|-|++
T Consensus 36 k~L~~~Gi~v~~Vs~-~Tg~peil~gRvK-TLhp~i 69 (157)
T d1zcza1 36 KFLKSNGIEANDVST-ITGFENLLGGLVK-TLHPEI 69 (157)
T ss_dssp HHHHHTTCCCEEGGG-GSCCCCGGGGTTT-TCCHHH
T ss_pred HHHHHhhhhhhHHHH-HhhHHHHHHhhhc-cchHHH
Confidence 344444444444444 3345555444432 444443
No 19
>d2dnaa1 a.5.2.1 (A:12-61) Ubiquilin-like protein Ubqlnl {Mouse (Mus musculus) [TaxId: 10090]}
Probab=30.20 E-value=5.5 Score=23.62 Aligned_cols=18 Identities=17% Similarity=0.305 Sum_probs=11.6
Q ss_pred hhHHHHHHHHHHhCCCCC
Q 043018 118 DLFKTMMDVIKKIGIEPT 135 (300)
Q Consensus 118 ~~l~~~v~~L~~lG~~~~ 135 (300)
++..+-++-|+++||...
T Consensus 6 ~ry~~QL~qL~~MGF~d~ 23 (50)
T d2dnaa1 6 VRFSKEMECLQAMGFVNY 23 (50)
T ss_dssp HHTHHHHHHHHHHTCCCH
T ss_pred HHHHHHHHHHHHcCCCCH
Confidence 355666777777777554
No 20
>d2croa_ a.35.1.2 (A:) cro 434 {Bacteriophage 434 [TaxId: 10712]}
Probab=30.03 E-value=19 Score=21.69 Aligned_cols=22 Identities=5% Similarity=0.037 Sum_probs=12.5
Q ss_pred HHHHHHHHH-hCCCCHHHHHHHH
Q 043018 154 WEKKKDALM-SFSWSEDEFYLAF 175 (300)
Q Consensus 154 l~~kv~~l~-~lG~s~~~i~~m~ 175 (300)
+..++..++ +.|++.+|+.+.+
T Consensus 4 i~~rlr~~R~~~gltq~~lA~~~ 26 (65)
T d2croa_ 4 LSERLKKRRIALKMTQTELATKA 26 (65)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHH
Confidence 445555555 5666666666444
No 21
>d1vkea_ a.152.1.2 (A:) Hypothetical protein TM1620 {Thermotoga maritima [TaxId: 2336]}
Probab=28.57 E-value=78 Score=21.52 Aligned_cols=27 Identities=11% Similarity=0.051 Sum_probs=22.4
Q ss_pred cHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 043018 150 SKATWEKKKDALMSFSWSEDEFYLAFK 176 (300)
Q Consensus 150 ~~~~l~~kv~~l~~lG~s~~~i~~m~~ 176 (300)
.+.-+...+.-..+.|.|.+||...+.
T Consensus 56 c~~c~~~H~~~A~~~G~t~eEI~Eal~ 82 (118)
T d1vkea_ 56 CDDCIRYHLVRCVQEGASDEEIFEALD 82 (118)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 466788888899999999999986654
No 22
>d2daha1 a.5.2.1 (A:8-48) Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=27.51 E-value=5.1 Score=22.72 Aligned_cols=14 Identities=7% Similarity=0.354 Sum_probs=7.2
Q ss_pred HHHHHHHHhCCCCC
Q 043018 122 TMMDVIKKIGIEPT 135 (300)
Q Consensus 122 ~~v~~L~~lG~~~~ 135 (300)
.-++.|+++||...
T Consensus 4 ~QL~~L~~MGF~d~ 17 (41)
T d2daha1 4 VQLEQLRSMGFLNR 17 (41)
T ss_dssp HHHHHHHHHTCCCH
T ss_pred HHHHHHHHcCCCCH
Confidence 34455555665443
No 23
>d1b0na2 a.35.1.3 (A:1-68) SinR repressor, DNA-binding domain {Bacillus subtilis [TaxId: 1423]}
Probab=27.47 E-value=59 Score=19.38 Aligned_cols=14 Identities=0% Similarity=0.057 Sum_probs=9.4
Q ss_pred HHHHhCCChhhhhh
Q 043018 196 FVNEIGLKPLDIVR 209 (300)
Q Consensus 196 l~~~~g~~~~~i~~ 209 (300)
+.+.+|+++++++.
T Consensus 50 ia~~l~v~~~~l~~ 63 (68)
T d1b0na2 50 VSAVLDVSVHTLLD 63 (68)
T ss_dssp HHHHHTCCHHHHHC
T ss_pred HHHHHCCcHHHHcC
Confidence 44567888877764
No 24
>d1q08a_ a.6.1.3 (A:) Transcriptional regulator ZntR {Escherichia coli [TaxId: 562]}
Probab=27.47 E-value=25 Score=23.17 Aligned_cols=21 Identities=5% Similarity=0.116 Sum_probs=16.5
Q ss_pred HHHHHHH---hCCCCHHHHHHHHH
Q 043018 156 KKKDALM---SFSWSEDEFYLAFK 176 (300)
Q Consensus 156 ~kv~~l~---~lG~s~~~i~~m~~ 176 (300)
.++.|.+ .+|||-+||..++.
T Consensus 4 ~RL~fI~~ar~lGFsL~EI~~ll~ 27 (94)
T d1q08a_ 4 QRLKFIRHARQLGFSLESIRELLS 27 (94)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHH
Confidence 3555654 79999999999986
No 25
>d2hsga1 a.35.1.5 (A:2-58) Glucose-resistance amylase regulator CcpA, N-terminal domain {Bacillus megaterium [TaxId: 1404]}
Probab=26.62 E-value=60 Score=19.18 Aligned_cols=43 Identities=14% Similarity=0.119 Sum_probs=30.5
Q ss_pred HHhCCCCHHHHHHHHHcCCcccccchhhHHHHHHHHHHHhCCChhhh
Q 043018 161 LMSFSWSEDEFYLAFKRQPMLMLSSTKKIRELMDFFVNEIGLKPLDI 207 (300)
Q Consensus 161 l~~lG~s~~~i~~m~~~~P~iL~~S~~~l~~ki~fl~~~~g~~~~~i 207 (300)
-+..|+|...|...+...|. .|.+. +.++.-..+++|+.++..
T Consensus 8 A~~agvS~~TVSr~Ln~~~~---Vs~~t-r~rV~~aa~~lgY~pn~~ 50 (57)
T d2hsga1 8 AREASVSMATVSRVVNGNPN---VKPST-RKKVLETIERLGYRPNAV 50 (57)
T ss_dssp HHHTTSCHHHHHHHHTTCTT---SCHHH-HHHHHHHHHHHTCCSCHH
T ss_pred HHHHCcCHHHHHHHhCCCCc---CCHHH-HHHHHHHHHHHCcCCCHH
Confidence 34789999999999988885 45555 445555556699876654
No 26
>d1k6ya1 a.4.10.1 (A:1-46) N-terminal Zn binding domain of HIV integrase {Human immunodeficiency virus type 1 [TaxId: 11676]}
Probab=25.74 E-value=20 Score=20.56 Aligned_cols=28 Identities=7% Similarity=-0.064 Sum_probs=22.3
Q ss_pred HHHHHHHHH-hCCCCHHHHHHHHHcCCcc
Q 043018 154 WEKKKDALM-SFSWSEDEFYLAFKRQPML 181 (300)
Q Consensus 154 l~~kv~~l~-~lG~s~~~i~~m~~~~P~i 181 (300)
+-.+...|. .+|++.....+++..||..
T Consensus 15 ~H~n~~~L~~~F~ip~~vAr~IV~~C~~C 43 (46)
T d1k6ya1 15 YHSNWRAMASDFNLPPVVAKEIVASCDKC 43 (46)
T ss_dssp HCCCHHHHHHHHTCCHHHHHHHHHHCTTC
T ss_pred HhcCHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 334456676 7999999999999999974
No 27
>d1pbya1 a.3.1.7 (A:1-85) Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2 {Paracoccus denitrificans [TaxId: 266]}
Probab=25.72 E-value=56 Score=21.01 Aligned_cols=44 Identities=9% Similarity=0.249 Sum_probs=28.6
Q ss_pred ccHHHHHHHHHHHHhCCCCHHHHHHHHHcCCcccccchhhHHHHHHHHHHHhCCChhhh
Q 043018 149 LSKATWEKKKDALMSFSWSEDEFYLAFKRQPMLMLSSTKKIRELMDFFVNEIGLKPLDI 207 (300)
Q Consensus 149 ~~~~~l~~kv~~l~~lG~s~~~i~~m~~~~P~iL~~S~~~l~~ki~fl~~~~g~~~~~i 207 (300)
.+.+.|...|+.++ ..+.. .++.+....-++||.+..|..+++-
T Consensus 31 ~t~~~W~~~V~~M~-------------~~~Ga--~l~~~e~~~Iv~YLa~~yG~~p~e~ 74 (85)
T d1pbya1 31 KTPEGWDMTVTRMM-------------RNHGV--ALEPEERAAIVRHLSDTRGLSLAET 74 (85)
T ss_dssp ECHHHHHHHHHHHH-------------HHSCC--CCCHHHHHHHHHHHHHHSCCCSGGG
T ss_pred CCHHHHHHHHHHHH-------------HHcCC--CCCHHHHHHHHHHHHHHcCCCcccc
Confidence 45666777666654 22221 1355566778899999999888763
No 28
>d2ouwa1 a.152.1.4 (A:1-134) Hypothetical protein Rru_A0301 {Rhodospirillum rubrum [TaxId: 1085]}
Probab=25.58 E-value=96 Score=21.18 Aligned_cols=107 Identities=12% Similarity=0.108 Sum_probs=54.5
Q ss_pred hhhHHHHHHh-cCC-ChHHHHHHhhhCCcceeechhhHHHHHHHHHHh-----CCCCCChhHHHHHHHHhhccHHHHHHH
Q 043018 85 LAPNVNTLRA-HGV-PEHLIAKLIMINPSSLIKRRDLFKTMMDVIKKI-----GIEPTNFMFILAVRSMSVLSKATWEKK 157 (300)
Q Consensus 85 l~~~v~~L~~-lGl-~~~~i~~ll~~~P~ll~~~~~~l~~~v~~L~~l-----G~~~~~~~~~~~~~~l~~~~~~~l~~k 157 (300)
.++.++..++ .|. --.++.+++..+|.++ +.....+..+ .+++..+.++...-.......--+...
T Consensus 18 ~~~i~~~i~~~~g~~~vpN~~~~la~~P~~l-------~~~~~~~~~~~~~~~~L~~~~kEli~l~vS~~n~C~YC~~~H 90 (134)
T d2ouwa1 18 VKAVFDDIRATRGSDFVNNIWRGLANDPALL-------KRTWEQVKTVMVGEGALDPLTREMIYLAVSTANSCSYCAHSH 90 (134)
T ss_dssp HHHHHHHHHHHHSSSCCCHHHHHHTTSHHHH-------HHHHHHHHHHHSSSSSSCHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCHHHHHHccCHHHH-------HHHHHHHHHHHHhhhccCHHHHHHHHHHHHHHcCChHHHHHH
Confidence 3444554443 452 1226667776666544 3334444332 233333322221111112223446777
Q ss_pred HHHHHhCCCCHHHHHHHHHcCCcccccchhhHHHHHHHHHHHhCCChhhh
Q 043018 158 KDALMSFSWSEDEFYLAFKRQPMLMLSSTKKIRELMDFFVNEIGLKPLDI 207 (300)
Q Consensus 158 v~~l~~lG~s~~~i~~m~~~~P~iL~~S~~~l~~ki~fl~~~~g~~~~~i 207 (300)
....+..|+|+++|.+++. ...+.....-+...++.++++.
T Consensus 91 ~~~a~~~G~s~e~I~e~~a---------~~~~~~~~~~l~~~~~~~vD~~ 131 (134)
T d2ouwa1 91 TAAARAKGMTPAQHAEVLA---------IIGLAAQTNALVTAMQIPVDEA 131 (134)
T ss_dssp HHHHHHTTCCHHHHHHHHH---------HHHHHHHHHHHHHHHTCCCCGG
T ss_pred HHHHHHcCCCHHHHHHHHH---------HHHHHhhhHHHHHHhcCCCCch
Confidence 8888999999999998752 2223333444555566666553
No 29
>d1g8ma1 c.24.1.3 (A:4-200) IMP cyclohydrolase domain of bifunctional purine biosynthesis enzyme ATIC {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=25.03 E-value=45 Score=25.31 Aligned_cols=59 Identities=12% Similarity=0.140 Sum_probs=40.5
Q ss_pred CChhHHHHHHHhCCCCCCchhHHHhhcCccccccccCcchhhhhHhhhhccCChhHHHHHHhCCcccccchhhhhhhHHH
Q 043018 11 KSLRPKIDYFESVGISGADLPKFLCSNKQLLVVSLKSNIIPIFEFLKGLVQTNVNLVHAVKQSSRIINCNIEKRLAPNVN 90 (300)
Q Consensus 11 ~~l~~~l~~L~~lG~s~~~i~~ii~~~P~lL~~s~e~~l~p~v~fL~~~g~~~~~v~~il~~~P~iL~~s~e~~l~~~v~ 90 (300)
..+.+....|.++|+. |++. .-.-.||++.|++-.+|.++ +.+|.++.-.+. +|-|++-
T Consensus 13 ~~l~~la~~L~~~g~~-------------IisT------gGTak~L~~~gi~v~~Vs~~-tg~peil~GRVK-TLhPkI~ 71 (197)
T d1g8ma1 13 AGLVEFARSLNALGLG-------------LIAS------GGTATALRDAGLPVRDVSDL-TGFPEMLGGRVK-TLHPAVH 71 (197)
T ss_dssp TTHHHHHHHHHHTTCE-------------EEEC------HHHHHHHHHTTCCCEEHHHH-HSCCCBGGGTBS-SCSHHHH
T ss_pred cCHHHHHHHHHHCCCE-------------EEEC------cHHHHHHHHhcccHHHHHhh-hcCHHHHHHHHh-hccceee
Confidence 3577777777777763 2322 33667888888888888774 688888888874 5777763
No 30
>d1tc3c_ a.4.1.2 (C:) Transposase tc3a1-65 {Caenorhabditis elegans [TaxId: 6239]}
Probab=24.74 E-value=44 Score=19.18 Aligned_cols=25 Identities=16% Similarity=0.082 Sum_probs=20.7
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHcC
Q 043018 154 WEKKKDALMSFSWSEDEFYLAFKRQ 178 (300)
Q Consensus 154 l~~kv~~l~~lG~s~~~i~~m~~~~ 178 (300)
=+.++|....+|+|-+++.+.+.+.
T Consensus 10 e~aqlDVm~~L~~slhemaR~i~rS 34 (51)
T d1tc3c_ 10 ERAQLDVMKLLNVSLHEMSRKISRS 34 (51)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHTCC
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHh
Confidence 4678999999999999998776654
No 31
>d2af7a1 a.152.1.2 (A:1-119) Gamma-carboxymuconolactone decarboxylase, CMD {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=24.67 E-value=52 Score=22.48 Aligned_cols=27 Identities=11% Similarity=0.118 Sum_probs=22.0
Q ss_pred cHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 043018 150 SKATWEKKKDALMSFSWSEDEFYLAFK 176 (300)
Q Consensus 150 ~~~~l~~kv~~l~~lG~s~~~i~~m~~ 176 (300)
.+..+...+.-....|+|++||..++.
T Consensus 69 ~~~~l~~H~~~Al~~G~t~eEi~e~~~ 95 (119)
T d2af7a1 69 ADDQLKSHVRGALNAGCSKDEIIEVMI 95 (119)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence 456688888888899999999987765
No 32
>d2prra1 a.152.1.3 (A:5-194) Uncharacterized protein Reut_A2532 {Ralstonia eutropha [TaxId: 106590]}
Probab=24.43 E-value=21 Score=26.52 Aligned_cols=43 Identities=21% Similarity=0.330 Sum_probs=29.3
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHcCCcccccchhhHHHHHHHHHHHhCCChhh
Q 043018 155 EKKKDALMSFSWSEDEFYLAFKRQPMLMLSSTKKIRELMDFFVNEIGLKPLD 206 (300)
Q Consensus 155 ~~kv~~l~~lG~s~~~i~~m~~~~P~iL~~S~~~l~~ki~fl~~~~g~~~~~ 206 (300)
++-++-|++.||+++||..++.-. ..-.-++.+.+.+|+++++
T Consensus 138 d~~~~~L~~~g~s~~eivel~~~v---------a~~~~~nr~~~~l~i~~d~ 180 (190)
T d2prra1 138 EADFEALREHGFTDEDAWDIAAIT---------AFFGLSNRMANTIGMRPND 180 (190)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHH---------HHHHHHHHHHHHHTCCCCH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHH---------HHHHHHHHHHHHhCCCCCh
Confidence 445677888999999998776511 1334455566778888765
No 33
>d1g8ma1 c.24.1.3 (A:4-200) IMP cyclohydrolase domain of bifunctional purine biosynthesis enzyme ATIC {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=24.14 E-value=27 Score=26.64 Aligned_cols=110 Identities=10% Similarity=0.120 Sum_probs=63.3
Q ss_pred HHHHHHhCCCCCCchhHHHhhcCccccccccCcchhhhh--HhhhhccCChhHHHHHH-hCCcc--cc---cchhhhhhh
Q 043018 16 KIDYFESVGISGADLPKFLCSNKQLLVVSLKSNIIPIFE--FLKGLVQTNVNLVHAVK-QSSRI--IN---CNIEKRLAP 87 (300)
Q Consensus 16 ~l~~L~~lG~s~~~i~~ii~~~P~lL~~s~e~~l~p~v~--fL~~~g~~~~~v~~il~-~~P~i--L~---~s~e~~l~~ 87 (300)
.-.||++.|++-.+|.++ +-+|.++.-.+. +|-|++. .|.. -..++-..+-. ..|.| +. |..++.+..
T Consensus 35 Tak~L~~~gi~v~~Vs~~-tg~peil~GRVK-TLhPkI~~gIL~~--~~~~~~~~~~~~~i~~IdlVvvNlYPF~~~~~~ 110 (197)
T d1g8ma1 35 TATALRDAGLPVRDVSDL-TGFPEMLGGRVK-TLHPAVHAGILAR--NIPEDNADMNKQDFSLVRVVVCNLYPFVKTVSS 110 (197)
T ss_dssp HHHHHHHTTCCCEEHHHH-HSCCCBGGGTBS-SCSHHHHHHHHCC--SSHHHHHHHHHTTCCCEEEEEEECCCHHHHHTS
T ss_pred HHHHHHHhcccHHHHHhh-hcCHHHHHHHHh-hccceeeeeeccc--ccchhHHHHHhhccCCcceeeecccchhhhhcc
Confidence 357999999999999995 799999998874 9999985 2221 11222223222 12221 21 333333311
Q ss_pred ---HH-HHHHhcCCC-hHHHHHHhhhCCccee-echhhHHHHHHHHHH
Q 043018 88 ---NV-NTLRAHGVP-EHLIAKLIMINPSSLI-KRRDLFKTMMDVIKK 129 (300)
Q Consensus 88 ---~v-~~L~~lGl~-~~~i~~ll~~~P~ll~-~~~~~l~~~v~~L~~ 129 (300)
.. +..+..-+. ..-|+.....+..+.. .+++.-...++.+..
T Consensus 111 ~~~~~~~~iE~IDIGGpsliRAAAKN~~~V~Vl~dP~dY~~~i~~l~~ 158 (197)
T d1g8ma1 111 PGVTVPEAVEKIDIGGVALLRAAAKNHARVTVVCDPADYSSVAKEMAA 158 (197)
T ss_dssp TTCCHHHHHTTCCSHHHHHHHHHHHTTTTCEEECCGGGHHHHHHHHHT
T ss_pred ccCCHHHHHHHhcccccHHHHHHHHhcCCeeEeccHHHHHHHHHHHHh
Confidence 11 223333332 3345555666777664 456677777777764
No 34
>d1jmxa1 a.3.1.7 (A:2-85) Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2 {Pseudomonas putida [TaxId: 303]}
Probab=23.97 E-value=62 Score=20.75 Aligned_cols=46 Identities=15% Similarity=0.259 Sum_probs=29.9
Q ss_pred ccHHHHHHHHHHHH-hCCCCHHHHHHHHHcCCcccccchhhHHHHHHHHHHHhCCChhhhhhC
Q 043018 149 LSKATWEKKKDALM-SFSWSEDEFYLAFKRQPMLMLSSTKKIRELMDFFVNEIGLKPLDIVRC 210 (300)
Q Consensus 149 ~~~~~l~~kv~~l~-~lG~s~~~i~~m~~~~P~iL~~S~~~l~~ki~fl~~~~g~~~~~i~~~ 210 (300)
.+.+.|...|+.++ ..|. -++.+....-++||.+..|..+++-.-.
T Consensus 31 ~t~~~W~~~V~~M~~~~Ga----------------~l~~~e~~~Iv~YLa~~yG~~p~e~~~~ 77 (84)
T d1jmxa1 31 KTPEGWLMSIARMQVMHGL----------------QISDDDRRTLVKYLADKQGLAPSETDGV 77 (84)
T ss_dssp ECHHHHHHHHHHHHHHHCC----------------CCCHHHHHHHHHHHHHHTCCCGGGSTTC
T ss_pred CCHHHHHHHHHHHHHHcCC----------------CCCHHHHHHHHHHHHHHcCCCccccccc
Confidence 45566777766664 2331 1444556677899999999988775433
No 35
>d1r69a_ a.35.1.2 (A:) 434 C1 repressor, DNA-binding domain {Bacteriophage 434 [TaxId: 10712]}
Probab=23.81 E-value=54 Score=19.18 Aligned_cols=22 Identities=5% Similarity=0.059 Sum_probs=12.3
Q ss_pred HHHHHHHH-hCCCCHHHHHHHHH
Q 043018 155 EKKKDALM-SFSWSEDEFYLAFK 176 (300)
Q Consensus 155 ~~kv~~l~-~lG~s~~~i~~m~~ 176 (300)
-.++..++ +.|++.+|+.+.+.
T Consensus 3 g~rik~~R~~~g~sq~elA~~~g 25 (63)
T d1r69a_ 3 SSRVKSKRIQLGLNQAELAQKVG 25 (63)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHT
T ss_pred HHHHHHHHHHcCCcHHHHHHHhC
Confidence 34555555 56666666664443
No 36
>d1oqya2 a.5.2.1 (A:317-360) DNA repair protein Hhr23a {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.07 E-value=20 Score=20.33 Aligned_cols=17 Identities=18% Similarity=0.229 Sum_probs=9.0
Q ss_pred HHHHHhCCCCHHHHHHH
Q 043018 158 KDALMSFSWSEDEFYLA 174 (300)
Q Consensus 158 v~~l~~lG~s~~~i~~m 174 (300)
|+-|..+||+++.+.+.
T Consensus 8 IeRL~~LGF~r~~viqa 24 (44)
T d1oqya2 8 IERLKALGFPESLVIQA 24 (44)
T ss_dssp HHHHHHHTCCSHHHHHH
T ss_pred HHHHHHcCCCHHHHHHH
Confidence 44455556665555543
No 37
>d1z96a1 a.5.2.1 (A:295-332) UBA-domain protein mud1 {Schizosaccharomyces pombe [TaxId: 4896]}
Probab=21.00 E-value=57 Score=16.92 Aligned_cols=23 Identities=22% Similarity=0.186 Sum_probs=16.2
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHH
Q 043018 154 WEKKKDALMSFSWSEDEFYLAFK 176 (300)
Q Consensus 154 l~~kv~~l~~lG~s~~~i~~m~~ 176 (300)
+..|+.-+.++||++-+..+.+.
T Consensus 2 lnskiaqlvsmgfdpleaaqald 24 (38)
T d1z96a1 2 LNSKIAQLVSMGFDPLEAAQALD 24 (38)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHH
T ss_pred cchHHHHHHHcCCCHHHHHHHHh
Confidence 34577778888888877765544
Done!