Query 043019
Match_columns 204
No_of_seqs 131 out of 1066
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 12:01:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043019.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043019hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1441 Glucose-6-phosphate/ph 100.0 6.7E-34 1.4E-38 244.6 12.6 189 2-190 5-197 (316)
2 KOG1444 Nucleotide-sugar trans 100.0 5.1E-28 1.1E-32 205.4 14.3 188 11-201 12-203 (314)
3 PTZ00343 triose or hexose phos 100.0 4E-27 8.6E-32 206.7 16.8 167 9-180 47-218 (350)
4 TIGR00817 tpt Tpt phosphate/ph 99.9 4.8E-25 1E-29 189.1 17.6 164 12-180 3-169 (302)
5 KOG1443 Predicted integral mem 99.9 2E-23 4.4E-28 176.1 9.8 158 16-178 21-186 (349)
6 COG5070 VRG4 Nucleotide-sugar 99.9 3E-22 6.6E-27 162.8 6.8 190 10-202 5-202 (309)
7 PF08449 UAA: UAA transporter 99.9 2.6E-20 5.7E-25 160.3 16.6 172 30-201 16-200 (303)
8 KOG1442 GDP-fucose transporter 99.8 2.2E-21 4.7E-26 161.8 2.7 155 24-178 38-207 (347)
9 KOG1583 UDP-N-acetylglucosamin 99.5 2.1E-14 4.5E-19 120.3 1.9 158 45-203 33-212 (330)
10 KOG1582 UDP-galactose transpor 99.4 5.8E-13 1.2E-17 111.6 5.9 147 32-178 61-212 (367)
11 PF06027 DUF914: Eukaryotic pr 99.3 9.2E-11 2E-15 102.4 15.5 179 24-203 23-218 (334)
12 KOG1580 UDP-galactose transpor 99.3 6E-12 1.3E-16 103.8 6.1 137 41-177 49-193 (337)
13 KOG1581 UDP-galactose transpor 99.2 6.6E-10 1.4E-14 94.5 16.5 148 40-189 46-203 (327)
14 TIGR00950 2A78 Carboxylate/Ami 99.2 6.4E-10 1.4E-14 92.8 14.2 142 31-177 6-149 (260)
15 PRK11689 aromatic amino acid e 99.1 4.5E-09 9.7E-14 90.2 16.8 142 31-177 21-177 (295)
16 PRK11272 putative DMT superfam 99.1 8.1E-09 1.8E-13 88.4 16.1 143 31-177 25-171 (292)
17 PRK11453 O-acetylserine/cystei 99.0 3.2E-08 7E-13 84.9 15.6 138 32-177 22-164 (299)
18 PLN00411 nodulin MtN21 family 99.0 4.1E-08 8.9E-13 86.8 16.3 152 24-177 23-210 (358)
19 TIGR00688 rarD rarD protein. T 99.0 2.4E-08 5.2E-13 83.6 14.0 138 32-177 20-167 (256)
20 PF04142 Nuc_sug_transp: Nucle 98.9 1.8E-08 3.9E-13 84.6 11.1 107 77-183 18-141 (244)
21 PRK15430 putative chlorampheni 98.9 7.3E-08 1.6E-12 82.7 14.2 145 24-177 19-170 (296)
22 PRK10532 threonine and homoser 98.8 5E-07 1.1E-11 77.4 16.2 139 31-178 29-170 (293)
23 PF00892 EamA: EamA-like trans 98.8 4.2E-08 9.1E-13 72.1 8.1 112 31-146 8-124 (126)
24 KOG2765 Predicted membrane pro 98.6 1.2E-07 2.5E-12 83.0 8.3 125 78-202 157-300 (416)
25 TIGR03340 phn_DUF6 phosphonate 98.6 9.5E-07 2.1E-11 75.1 13.1 97 81-177 68-165 (281)
26 COG0697 RhaT Permeases of the 98.6 7.2E-06 1.6E-10 68.5 18.1 134 45-178 36-176 (292)
27 PF13536 EmrE: Multidrug resis 98.5 7.4E-07 1.6E-11 65.9 7.8 76 76-152 34-110 (113)
28 KOG3912 Predicted integral mem 98.4 1E-05 2.2E-10 68.8 13.1 164 24-189 13-207 (372)
29 TIGR00776 RhaT RhaT L-rhamnose 98.1 0.00011 2.3E-09 63.2 14.3 103 75-177 54-173 (290)
30 KOG2234 Predicted UDP-galactos 98.0 0.0003 6.6E-09 61.4 13.9 160 24-183 25-210 (345)
31 TIGR00950 2A78 Carboxylate/Ami 97.9 0.00028 6.2E-09 58.6 13.1 114 28-143 142-259 (260)
32 KOG4314 Predicted carbohydrate 97.8 4.4E-05 9.5E-10 62.1 5.3 111 76-186 53-165 (290)
33 PRK15051 4-amino-4-deoxy-L-ara 97.7 0.00043 9.4E-09 51.2 9.8 62 85-146 46-107 (111)
34 KOG4510 Permease of the drug/m 97.5 4.7E-05 1E-09 64.4 2.4 148 23-177 47-212 (346)
35 TIGR00803 nst UDP-galactose tr 97.4 0.00012 2.6E-09 60.1 3.5 97 100-200 2-125 (222)
36 COG2510 Predicted membrane pro 97.4 0.0026 5.6E-08 48.3 10.2 124 22-148 11-139 (140)
37 PRK11272 putative DMT superfam 97.4 0.0045 9.8E-08 52.9 12.9 108 44-151 176-288 (292)
38 PF03151 TPT: Triose-phosphate 97.4 0.0045 9.8E-08 47.3 11.4 122 25-147 11-152 (153)
39 PLN00411 nodulin MtN21 family 97.3 0.0041 8.9E-08 55.1 11.7 115 32-148 207-328 (358)
40 PRK10452 multidrug efflux syst 97.1 0.0037 8.1E-08 47.0 7.9 73 77-149 31-104 (120)
41 PRK11431 multidrug efflux syst 97.0 0.0043 9.3E-08 45.6 7.6 68 79-146 32-100 (105)
42 PRK09541 emrE multidrug efflux 97.0 0.0041 8.9E-08 46.0 7.5 66 82-147 36-102 (110)
43 COG5006 rhtA Threonine/homoser 97.0 0.027 5.9E-07 47.6 13.1 137 32-177 30-169 (292)
44 PRK10650 multidrug efflux syst 96.9 0.01 2.2E-07 43.8 8.7 93 53-145 11-105 (109)
45 TIGR00817 tpt Tpt phosphate/ph 96.8 0.0051 1.1E-07 52.6 7.7 118 30-148 161-293 (302)
46 PRK02971 4-amino-4-deoxy-L-ara 96.7 0.0056 1.2E-07 46.6 6.3 71 79-149 50-123 (129)
47 PRK10532 threonine and homoser 96.7 0.042 9.1E-07 47.0 12.1 68 80-147 212-280 (293)
48 COG2076 EmrE Membrane transpor 96.6 0.012 2.6E-07 43.2 7.3 69 77-145 31-100 (106)
49 PRK11689 aromatic amino acid e 96.5 0.027 5.9E-07 48.2 9.9 67 82-148 221-287 (295)
50 PTZ00343 triose or hexose phos 96.5 0.059 1.3E-06 47.4 12.1 125 22-147 202-347 (350)
51 PRK15430 putative chlorampheni 96.4 0.059 1.3E-06 46.1 11.6 64 82-145 219-282 (296)
52 PRK11453 O-acetylserine/cystei 96.3 0.11 2.3E-06 44.5 12.3 64 87-150 226-289 (299)
53 PF00893 Multi_Drug_Res: Small 96.2 0.029 6.4E-07 40.0 7.4 56 84-139 37-93 (93)
54 TIGR03340 phn_DUF6 phosphonate 96.2 0.0098 2.1E-07 50.5 5.6 62 84-145 219-280 (281)
55 KOG2766 Predicted membrane pro 96.0 0.0022 4.7E-08 54.2 0.7 126 24-151 28-153 (336)
56 PF08449 UAA: UAA transporter 95.5 0.22 4.8E-06 42.7 11.0 127 21-148 161-297 (303)
57 COG0697 RhaT Permeases of the 95.5 0.25 5.5E-06 40.8 11.1 74 76-149 214-288 (292)
58 PF06027 DUF914: Eukaryotic pr 95.2 0.27 5.8E-06 43.3 10.6 139 8-152 163-309 (334)
59 COG2962 RarD Predicted permeas 95.0 0.74 1.6E-05 39.6 12.4 137 31-177 24-169 (293)
60 PF05653 Mg_trans_NIPA: Magnes 95.0 0.062 1.3E-06 46.5 6.0 71 77-147 50-121 (300)
61 TIGR00776 RhaT RhaT L-rhamnose 94.9 0.3 6.4E-06 41.9 10.0 67 81-147 216-287 (290)
62 PF10639 UPF0546: Uncharacteri 94.6 0.082 1.8E-06 39.3 4.9 70 76-146 42-112 (113)
63 PF06800 Sugar_transport: Suga 91.9 0.49 1.1E-05 40.4 6.1 97 81-177 50-159 (269)
64 COG5006 rhtA Threonine/homoser 91.9 0.25 5.5E-06 41.8 4.3 71 77-147 206-281 (292)
65 TIGR00803 nst UDP-galactose tr 89.8 7.1 0.00015 31.6 11.1 65 81-145 157-221 (222)
66 PF06800 Sugar_transport: Suga 84.8 24 0.00052 30.2 12.3 68 77-144 196-267 (269)
67 COG2962 RarD Predicted permeas 84.6 21 0.00045 30.9 11.1 70 79-148 214-283 (293)
68 KOG2922 Uncharacterized conser 80.7 2.3 4.9E-05 37.2 3.9 71 78-148 65-136 (335)
69 PRK13499 rhamnose-proton sympo 69.9 13 0.00029 32.9 6.0 96 82-177 79-195 (345)
70 PF04657 DUF606: Protein of un 66.8 54 0.0012 24.9 10.5 112 31-145 18-138 (138)
71 PF06946 Phage_holin_5: Phage 66.0 15 0.00033 26.2 4.5 55 129-186 31-90 (93)
72 KOG2765 Predicted membrane pro 61.6 29 0.00063 31.3 6.4 145 8-153 242-395 (416)
73 KOG1444 Nucleotide-sugar trans 50.4 98 0.0021 27.1 7.7 30 148-177 275-304 (314)
74 TIGR00688 rarD rarD protein. T 46.6 59 0.0013 26.7 5.8 48 76-123 208-255 (256)
75 COG5070 VRG4 Nucleotide-sugar 45.0 1.9E+02 0.0042 24.5 8.4 116 19-135 159-283 (309)
76 PF04142 Nuc_sug_transp: Nucle 42.6 2E+02 0.0043 23.9 12.7 113 22-137 122-242 (244)
77 KOG4510 Permease of the drug/m 36.8 1.2E+02 0.0025 26.4 6.0 99 43-141 218-318 (346)
78 COG3274 Predicted O-acyltransf 34.4 40 0.00086 29.7 2.9 27 103-129 45-71 (332)
79 PRK15075 citrate-proton sympor 31.4 2.9E+02 0.0063 24.3 8.1 42 1-42 1-47 (434)
80 COG2510 Predicted membrane pro 29.1 1.9E+02 0.0041 22.2 5.4 45 83-127 12-56 (140)
81 COG3949 Uncharacterized membra 27.2 1.6E+02 0.0034 26.2 5.4 55 73-127 209-270 (349)
82 KOG1441 Glucose-6-phosphate/ph 25.3 1.3E+02 0.0029 26.3 4.7 30 31-61 180-211 (316)
83 COG3296 Uncharacterized protei 24.9 3.2E+02 0.0069 20.9 6.1 66 101-166 41-107 (143)
No 1
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=100.00 E-value=6.7e-34 Score=244.65 Aligned_cols=189 Identities=31% Similarity=0.394 Sum_probs=175.2
Q ss_pred CCccccccccchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHhCCccCCC----CCch
Q 043019 2 SSTTKAADRKAATDVAAWMFNVVTSVGIIMVNKALMATYGFSFATTLTGLHFATTTMLTTFLRWLGYIQTSH----LPFS 77 (204)
Q Consensus 2 ~~~~~~~~~~~~~~~~~w~~~~~~S~~~~~~NK~il~~~~f~~P~~Lt~~q~~~~~~~~~i~~~~~~~~~~~----~~~~ 77 (204)
+++.+..+++......+|..++.+|++.++.||++++.++||||+++|.+|.+++++...+.+.+|..++++ .+++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~w~~~~v~~~~~nK~il~~~~f~~p~~lt~~~~~~~~l~~~v~~~l~~~~~~~~~~~~~~~ 84 (316)
T KOG1441|consen 5 SEPASGQLKKILRIGIAFAIWYVLSVGVIILNKYILSKYGFPFPITLTMLHLFCGALALLVIKVLKLVPPSKISSKLPLR 84 (316)
T ss_pred ccCcccccchhHHHHHHHHHHhhhheeeEEeeHhhhccCCCCCccHHHHHHHHHHHHHHHHHHHhcCCCCCccccccchH
Confidence 455556677777777777788899999999999999999999999999999999999999999999887665 3579
Q ss_pred hHHHHHHHHHHHHHHhhhhhccchHHHHHHHhhhhhHHHHHHHHHhcceecCcchhhhhhhhhhhheeeeeccccccHHH
Q 043019 78 ELVRFVVFANFSIVGMNVSLMWNSVGFYQIAKLSMIPVSCFLEVVLDKVRYSRDTKLSILLVLFGVGVCTVTDVSVNAKG 157 (204)
Q Consensus 78 ~~~plsl~~~~~i~~~n~sl~~~svs~~qi~K~~~pv~~~l~~~~~~~~~~s~~~~~sl~~i~~Gv~~~~~~d~~~~~~G 157 (204)
+++|+|+++++++.++|.|++++||||+|++|+++|++++++++++.+|++++.+++++++++.||++++++|.+||+.|
T Consensus 85 ~llpl~~~~~~~~v~~n~Sl~~v~VsF~q~iKa~~P~~tvl~~~~~~~~~~s~~~~lsL~piv~GV~ias~~e~~fn~~G 164 (316)
T KOG1441|consen 85 TLLPLGLVFCISHVLGNVSLSYVPVSFYQTIKALMPPFTVLLSVLLLGKTYSSMTYLSLLPIVFGVAIASVTELSFNLFG 164 (316)
T ss_pred HHHHHHHHHHHHHHhcchhhhccchhHHHHHHhhcchhHHHHHHHHhCCCCcceEEEEEEEeeeeEEEeeeccccccHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccccccccchh
Q 043019 158 FIAAFVAVWSTAMQQYHVILNISVSITHLFLCL 190 (204)
Q Consensus 158 ~~~~l~s~~~~a~~~i~~~~~~~~~~~~~~~~~ 190 (204)
++.++++++.+++++|+.|+.+++++++++++.
T Consensus 165 ~i~a~~s~~~~al~~I~~~~ll~~~~~~~~~~~ 197 (316)
T KOG1441|consen 165 FISAMISNLAFALRNILSKKLLTSKGESLNSMN 197 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhccccccCchH
Confidence 999999999999999999998877788887764
No 2
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=5.1e-28 Score=205.41 Aligned_cols=188 Identities=18% Similarity=0.236 Sum_probs=174.3
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHhCCccCCCCCc---hhHHHHHHHHH
Q 043019 11 KAATDVAAWMFNVVTSVGIIMVNKALMATYGFSFATTLTGLHFATTTMLTTFLRWLGYIQTSHLPF---SELVRFVVFAN 87 (204)
Q Consensus 11 ~~~~~~~~w~~~~~~S~~~~~~NK~il~~~~f~~P~~Lt~~q~~~~~~~~~i~~~~~~~~~~~~~~---~~~~plsl~~~ 87 (204)
++...+++|+ ++|+.+++.||++++.++||-.+++...|++++.+...+.+++|.++.+++++ |+|+|+++.+.
T Consensus 12 ~~l~sa~~Y~---~sS~lm~vvNK~vls~y~f~~~l~l~~~Q~l~s~~~v~~lk~~~lv~~~~l~~~~~kk~~P~~~lf~ 88 (314)
T KOG1444|consen 12 SPLLSALFYC---LSSILMTVVNKIVLSSYNFPMGLLLMLLQSLASVLVVLVLKRLGLVNFRPLDLRTAKKWFPVSLLFV 88 (314)
T ss_pred hhhHHHHHHH---HHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHhceeecCCcChHHHHHHccHHHHHH
Confidence 4567788888 99999999999999998777667777799999999999999999999988874 89999999999
Q ss_pred HHHHHhhhhhccchHHHHHHHhhhhhHHHHHHHHHhcceecCcchhhhhhhhhhhheeeeeccccccHHHHHHHHHHHHH
Q 043019 88 FSIVGMNVSLMWNSVGFYQIAKLSMIPVSCFLEVVLDKVRYSRDTKLSILLVLFGVGVCTVTDVSVNAKGFIAAFVAVWS 167 (204)
Q Consensus 88 ~~i~~~n~sl~~~svs~~qi~K~~~pv~~~l~~~~~~~~~~s~~~~~sl~~i~~Gv~~~~~~d~~~~~~G~~~~l~s~~~ 167 (204)
+++..+..+++|.|||+++++|+.+|+++++.|.+++|+|+++.++.++..+.+|...+..+|.++|..|+.|+..+++.
T Consensus 89 ~~i~t~~~slk~lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~v~~Sv~~m~~~s~~~~~~d~sf~~~gY~w~~~n~~~ 168 (314)
T KOG1444|consen 89 GMLFTGSKSLKYLNVPMFTVFKNLTIILTAIGEVLFFGKRPSNKVWASVFAMIIGSVAAAFTDLSFNLRGYSWALANCLT 168 (314)
T ss_pred HHHHHccccccccCchHHHHHhhchHHHHHHhHHhhcCcCchhhHHHHHHHHHHHHHhhccccceecchhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhccccccccch-hhhhhhhhceee
Q 043019 168 TAMQQYHVILNISVSITHLFLC-LNHHIVCIPVVV 201 (204)
Q Consensus 168 ~a~~~i~~~~~~~~~~~~~~~~-~~~~~~slp~~~ 201 (204)
++.+.++.||..+.++.+..+. +||+..++|.+.
T Consensus 169 ~a~~~v~~kk~vd~~~l~~~~lv~yNnl~~L~~l~ 203 (314)
T KOG1444|consen 169 TAAFVVYVKKSVDSANLNKFGLVFYNNLLSLPPLL 203 (314)
T ss_pred HHHHHHHHHHhhccccccceeEEeehhHHHHHHHH
Confidence 9999999999777777666555 799999999764
No 3
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=99.95 E-value=4e-27 Score=206.69 Aligned_cols=167 Identities=14% Similarity=0.207 Sum_probs=150.7
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHhCCccCCCC-----CchhHHHHH
Q 043019 9 DRKAATDVAAWMFNVVTSVGIIMVNKALMATYGFSFATTLTGLHFATTTMLTTFLRWLGYIQTSHL-----PFSELVRFV 83 (204)
Q Consensus 9 ~~~~~~~~~~w~~~~~~S~~~~~~NK~il~~~~f~~P~~Lt~~q~~~~~~~~~i~~~~~~~~~~~~-----~~~~~~pls 83 (204)
|-|....++.|+ .+|+..++.||+++++ +|||++++++|++++++.+.+.+..+..+.+++ ++++++|+|
T Consensus 47 ~~~~~~~~~~wy---~~s~~~~~~nK~vl~~--~~~P~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~llp~g 121 (350)
T PTZ00343 47 KWKLALLFLTWY---ALNVLYVVDNKLALNM--LPLPWTISSLQLFVGWLFALLYWATGFRKIPRIKSLKLFLKNFLPQG 121 (350)
T ss_pred cHHHHHHHHHHH---HHHHHHHHHHHHHHHh--CChhHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHH
Confidence 345566888888 9999999999999987 899999999999999998887777665443333 357899999
Q ss_pred HHHHHHHHHhhhhhccchHHHHHHHhhhhhHHHHHHHHHhcceecCcchhhhhhhhhhhheeeeeccccccHHHHHHHHH
Q 043019 84 VFANFSIVGMNVSLMWNSVGFYQIAKLSMIPVSCFLEVVLDKVRYSRDTKLSILLVLFGVGVCTVTDVSVNAKGFIAAFV 163 (204)
Q Consensus 84 l~~~~~i~~~n~sl~~~svs~~qi~K~~~pv~~~l~~~~~~~~~~s~~~~~sl~~i~~Gv~~~~~~d~~~~~~G~~~~l~ 163 (204)
+++.......|.|+++.+++++|++|+++|+++++++++++|||++++++++++++++|+++++.+|.++++.|.+++++
T Consensus 122 l~~~~~~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~~~~~~~~~~G~~~~l~ 201 (350)
T PTZ00343 122 LCHLFVHFGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALASVKELHFTWLAFWCAML 201 (350)
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHheecccchhHHHHHHHHHH
Confidence 99998888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhc
Q 043019 164 AVWSTAMQQYHVILNIS 180 (204)
Q Consensus 164 s~~~~a~~~i~~~~~~~ 180 (204)
|+++.|+|+++.||.+.
T Consensus 202 s~~~~a~~~i~~k~~~~ 218 (350)
T PTZ00343 202 SNLGSSLRSIFAKKTMK 218 (350)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 99999999999999553
No 4
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=99.93 E-value=4.8e-25 Score=189.15 Aligned_cols=164 Identities=19% Similarity=0.212 Sum_probs=147.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHhCCccCCCCC---chhHHHHHHHHHH
Q 043019 12 AATDVAAWMFNVVTSVGIIMVNKALMATYGFSFATTLTGLHFATTTMLTTFLRWLGYIQTSHLP---FSELVRFVVFANF 88 (204)
Q Consensus 12 ~~~~~~~w~~~~~~S~~~~~~NK~il~~~~f~~P~~Lt~~q~~~~~~~~~i~~~~~~~~~~~~~---~~~~~plsl~~~~ 88 (204)
....++.|+ .+|++++++||+++++ |++|+.+++.|+.++++.+.+.++.+..+.++.+ +++++|.|++++.
T Consensus 3 ~~~~~~~w~---~~~~~~~~~NK~~l~~--~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 77 (302)
T TIGR00817 3 TGLLFGLWY---FLNVYFNIYNKKLLNV--FPYPYFKTLISLAVGSLYCLLSWSSGLPKRLKISSALLKLLLPVAIVHTI 77 (302)
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHhh--CChhHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 345678888 9999999999999986 8999999999999999888887655544444443 5789999999999
Q ss_pred HHHHhhhhhccchHHHHHHHhhhhhHHHHHHHHHhcceecCcchhhhhhhhhhhheeeeeccccccHHHHHHHHHHHHHH
Q 043019 89 SIVGMNVSLMWNSVGFYQIAKLSMIPVSCFLEVVLDKVRYSRDTKLSILLVLFGVGVCTVTDVSVNAKGFIAAFVAVWST 168 (204)
Q Consensus 89 ~i~~~n~sl~~~svs~~qi~K~~~pv~~~l~~~~~~~~~~s~~~~~sl~~i~~Gv~~~~~~d~~~~~~G~~~~l~s~~~~ 168 (204)
+..++|.++++.|++++|++|+++|+++++++++++|||++++++.++++.++|+++.+.+|.+++..|..+++.+.++.
T Consensus 78 ~~~~~~~~l~~~s~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~~~~~~~~~~G~~~~l~a~~~~ 157 (302)
T TIGR00817 78 GHVTSNVSLSKVAVSFTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALASDTELSFNWAGFLSAMISNITF 157 (302)
T ss_pred HHHHHHHHHHhccHHHHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999988888889999999999999999
Q ss_pred HHHHHHHHhhhc
Q 043019 169 AMQQYHVILNIS 180 (204)
Q Consensus 169 a~~~i~~~~~~~ 180 (204)
|+|+++.||.++
T Consensus 158 a~~~v~~k~~~~ 169 (302)
T TIGR00817 158 VSRNIFSKKAMT 169 (302)
T ss_pred HHHHHHHHHhhc
Confidence 999999999443
No 5
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=99.89 E-value=2e-23 Score=176.07 Aligned_cols=158 Identities=20% Similarity=0.277 Sum_probs=140.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHhCCcc-CC---CCCc----hhHHHHHHHHH
Q 043019 16 VAAWMFNVVTSVGIIMVNKALMATYGFSFATTLTGLHFATTTMLTTFLRWLGYIQ-TS---HLPF----SELVRFVVFAN 87 (204)
Q Consensus 16 ~~~w~~~~~~S~~~~~~NK~il~~~~f~~P~~Lt~~q~~~~~~~~~i~~~~~~~~-~~---~~~~----~~~~plsl~~~ 87 (204)
+..|| .+|+++.++|||.-.+ |+||++++.+|+++-+.++...++....+ ++ +++| |+..|.|++.+
T Consensus 21 Vl~yY---~~Si~Ltf~~~~~~~~--f~fPLf~ts~h~~v~flfa~~~~~l~~~~~~r~r~~~sw~~~Lr~~aPtalata 95 (349)
T KOG1443|consen 21 VLLYY---FLSIGLTFYFKWLTKN--FHFPLFVTSLHLAVKFLFAALSRRLYQCSVPRARVVLSWRDYLRRLAPTALATA 95 (349)
T ss_pred HHHHH---HHHHHHHHHhhhhhcC--cCCchHHHHHHHHHHHHHHHHHHHHHhccCCccccCCcHHHHHHHhhhhhhhhh
Confidence 34555 9999999999998765 89999999999999999998876643222 22 3444 66779999999
Q ss_pred HHHHHhhhhhccchHHHHHHHhhhhhHHHHHHHHHhcceecCcchhhhhhhhhhhheeeeeccccccHHHHHHHHHHHHH
Q 043019 88 FSIVGMNVSLMWNSVGFYQIAKLSMIPVSCFLEVVLDKVRYSRDTKLSILLVLFGVGVCTVTDVSVNAKGFIAAFVAVWS 167 (204)
Q Consensus 88 ~~i~~~n~sl~~~svs~~qi~K~~~pv~~~l~~~~~~~~~~s~~~~~sl~~i~~Gv~~~~~~d~~~~~~G~~~~l~s~~~ 167 (204)
.+++++|+|++|+++++|++.|+++++|+.+++..|.-||+++.-.+.+++|.+|+.+.++++.+||..|+.+.+.+.++
T Consensus 96 ~DIGLSN~sl~yVtlSlYTM~KSSsi~FIllFs~if~lEk~~w~L~l~v~lI~~Glflft~KsTqf~i~Gf~lv~~aS~~ 175 (349)
T KOG1443|consen 96 LDIGLSNWSLEYVTLSLYTMTKSSSILFILLFSLIFKLEKFRWALVLIVLLIAVGLFLFTYKSTQFNIEGFFLVLAASLL 175 (349)
T ss_pred cccccccceeeeeeeeeeeeccccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhheeEEEecccceeehhHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhh
Q 043019 168 TAMQQYHVILN 178 (204)
Q Consensus 168 ~a~~~i~~~~~ 178 (204)
+++.-.+.++.
T Consensus 176 sGlRW~~tQ~l 186 (349)
T KOG1443|consen 176 SGLRWAFTQML 186 (349)
T ss_pred hhhhHHHHHHH
Confidence 99877777773
No 6
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=99.86 E-value=3e-22 Score=162.83 Aligned_cols=190 Identities=17% Similarity=0.188 Sum_probs=170.4
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHhCCccCCCCCchhHHHHHHHHHHH
Q 043019 10 RKAATDVAAWMFNVVTSVGIIMVNKALMATYGFSFATTLTGLHFATTTMLTTFLRWLGYIQTSHLPFSELVRFVVFANFS 89 (204)
Q Consensus 10 ~~~~~~~~~w~~~~~~S~~~~~~NK~il~~~~f~~P~~Lt~~q~~~~~~~~~i~~~~~~~~~~~~~~~~~~plsl~~~~~ 89 (204)
+......+.|. ..|+.+++.||++++..||+....+.+.|-.++.+.+.+.++.|..+.+..+.|+|+|.+++-..+
T Consensus 5 ~s~~~~~lsYc---~sSIlmTltNKyVls~~gfnMnflll~vQSlvcvv~l~iLk~l~~~~fR~t~aK~WfpiSfLLv~M 81 (309)
T COG5070 5 VSELTASLSYC---FSSILMTLTNKYVLSNLGFNMNFLLLAVQSLVCVVGLLILKFLRLVEFRLTKAKKWFPISFLLVVM 81 (309)
T ss_pred cccchHHHHHH---HHHHHHHHhhHheecCCCCchhhHHHHHHHHHHHHHHHHHHHHhHhheehhhhhhhcCHHHHHHHH
Confidence 34556778888 999999999999999999999999999999999999999999988877755689999999999999
Q ss_pred HHHhhhhhccchHHHHHHHhhhhhHHHHHHHHHhcceecCcchhhhhhhhhhhheeeeecccccc-------HHHHHHHH
Q 043019 90 IVGMNVSLMWNSVGFYQIAKLSMIPVSCFLEVVLDKVRYSRDTKLSILLVLFGVGVCTVTDVSVN-------AKGFIAAF 162 (204)
Q Consensus 90 i~~~n~sl~~~svs~~qi~K~~~pv~~~l~~~~~~~~~~s~~~~~sl~~i~~Gv~~~~~~d~~~~-------~~G~~~~l 162 (204)
+..+..|++|.++|.|+++|.++++.++.+|..++|+|.+.....+.++|+..-..+.++|.|-. -.|+.|+.
T Consensus 82 Iyt~SKsLqyL~vpiYTiFKNltII~iAygEvl~Fgg~vtsl~l~SFilMvlSS~va~w~D~q~~~~~~~~lN~GY~Wm~ 161 (309)
T COG5070 82 IYTSSKSLQYLAVPIYTIFKNLTIILIAYGEVLFFGGRVTSLELLSFILMVLSSVVATWGDQQASAFKAQILNPGYLWMF 161 (309)
T ss_pred HHhcccceeeeeeeHHHHhccceeehhHhhHHHHhcCccchhhHHHHHHHHHHHHHhccchhhHHHHHhcccCCceEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999998422 24999999
Q ss_pred HHHHHHHHHHHHHHhhhccccccc-cchhhhhhhhhceeee
Q 043019 163 VAVWSTAMQQYHVILNISVSITHL-FLCLNHHIVCIPVVVV 202 (204)
Q Consensus 163 ~s~~~~a~~~i~~~~~~~~~~~~~-~~~~~~~~~slp~~~~ 202 (204)
.+++.+|.+....||..+-++++. +.++||+.+|+|+++.
T Consensus 162 ~NclssaafVL~mrkri~ltNf~d~dtmfYnNllslPiL~~ 202 (309)
T COG5070 162 TNCLSSAAFVLIMRKRIKLTNFKDFDTMFYNNLLSLPILLS 202 (309)
T ss_pred hhhHhHHHHHHHHHHhhcccccchhhHHHHhhhHHHHHHHH
Confidence 999999999999998655555444 5579999999998764
No 7
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=99.85 E-value=2.6e-20 Score=160.31 Aligned_cols=172 Identities=23% Similarity=0.257 Sum_probs=144.9
Q ss_pred HHHHHHHhhh-cCCCchhhHHHHHHHHHHHHHHHHHHhCC-ccCCCCCchhHHHHHHHHHHHHHHhhhhhccchHHHHHH
Q 043019 30 IMVNKALMAT-YGFSFATTLTGLHFATTTMLTTFLRWLGY-IQTSHLPFSELVRFVVFANFSIVGMNVSLMWNSVGFYQI 107 (204)
Q Consensus 30 ~~~NK~il~~-~~f~~P~~Lt~~q~~~~~~~~~i~~~~~~-~~~~~~~~~~~~plsl~~~~~i~~~n~sl~~~svs~~qi 107 (204)
.++++.+.+. ++.+||.+++++|++++.+...+...... .++++.+++++++.++++.++..++|.|++|+|+|++++
T Consensus 16 g~~qE~i~~~~~~~~~~~~lt~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~i~~p~~~~ 95 (303)
T PF08449_consen 16 GILQEKIMTTPYGSPFPLFLTFVQFAFNALFSFILLSLFKFPKSRKIPLKKYAILSFLFFLASVLSNAALKYISYPTQIV 95 (303)
T ss_pred HHHHHHHHcCCCCCcccHHHHHHHHHHHHHHHHHHHHhccccCCCcChHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHH
Confidence 3566666665 44459999999999999999888665544 456677899999999999999999999999999999999
Q ss_pred HhhhhhHHHHHHHHHhcceecCcchhhhhhhhhhhheeeeecccc----cc------HHHHHHHHHHHHHHHHHHHHHHh
Q 043019 108 AKLSMIPVSCFLEVVLDKVRYSRDTKLSILLVLFGVGVCTVTDVS----VN------AKGFIAAFVAVWSTAMQQYHVIL 177 (204)
Q Consensus 108 ~K~~~pv~~~l~~~~~~~~~~s~~~~~sl~~i~~Gv~~~~~~d~~----~~------~~G~~~~l~s~~~~a~~~i~~~~ 177 (204)
.|++.|+++++++++++|||++++++++++++++|++++..+|.+ .+ ..|+++.+.+.+++|++.++.+|
T Consensus 96 ~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~~~~~~~~~~~~~G~~ll~~sl~~~a~~~~~qe~ 175 (303)
T PF08449_consen 96 FKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSSSSSSNSSSFSSALGIILLLLSLLLDAFTGVYQEK 175 (303)
T ss_pred HhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeecccccccccccccccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999988742 11 23999999999999999999999
Q ss_pred h-hccccccccchhhhhhhhhceee
Q 043019 178 N-ISVSITHLFLCLNHHIVCIPVVV 201 (204)
Q Consensus 178 ~-~~~~~~~~~~~~~~~~~slp~~~ 201 (204)
. .+.+....+.++|+|..++|...
T Consensus 176 ~~~~~~~~~~~~mfy~n~~~~~~~~ 200 (303)
T PF08449_consen 176 LFKKYGKSPWELMFYTNLFSLPFLL 200 (303)
T ss_pred HHHHhCCcHHHHHHHHHHHHHHHHH
Confidence 3 23333444556899999988654
No 8
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.82 E-value=2.2e-21 Score=161.81 Aligned_cols=155 Identities=22% Similarity=0.238 Sum_probs=138.8
Q ss_pred HHHHHHHHHHHHHhhh--cCCCchhhHHHHHHHHHHHHHHHHHHh-----CCccCCC--CC---chhHHHHHHHHHHHHH
Q 043019 24 VTSVGIIMVNKALMAT--YGFSFATTLTGLHFATTTMLTTFLRWL-----GYIQTSH--LP---FSELVRFVVFANFSIV 91 (204)
Q Consensus 24 ~~S~~~~~~NK~il~~--~~f~~P~~Lt~~q~~~~~~~~~i~~~~-----~~~~~~~--~~---~~~~~plsl~~~~~i~ 91 (204)
.+|++++|.||++++. ...+-|++.+++|.+++..++.+..+. +.++.++ ++ .++++|+++++.+++.
T Consensus 38 v~SI~~vf~nk~llss~~~~Ld~plf~t~~qcLvt~~~c~~ls~ls~k~~~~ftfp~~~ldl~t~r~vlplsvVfi~mI~ 117 (347)
T KOG1442|consen 38 VTSIGLVFLNKHLLSSLVVILDAPLFITWYQCLVTTSICLVLSSLSVKYPGLFTFPSLQLDLATARQVLPLSVVFILMIS 117 (347)
T ss_pred eeeehhhhhHHHHhhchhhhcCcHHHHHHHHHHHHHHHHHHHHHHHhhccceeccCcccccHHHHHhhcchhheeeeehh
Confidence 6999999999999996 556779999999999999998886553 2222233 33 3889999999999999
Q ss_pred HhhhhhccchHHHHHHHhhhhhHHHHHHHHHhcceecCcchhhhhhhhhhhheeeeecc---ccccHHHHHHHHHHHHHH
Q 043019 92 GMNVSLMWNSVGFYQIAKLSMIPVSCFLEVVLDKVRYSRDTKLSILLVLFGVGVCTVTD---VSVNAKGFIAAFVAVWST 168 (204)
Q Consensus 92 ~~n~sl~~~svs~~qi~K~~~pv~~~l~~~~~~~~~~s~~~~~sl~~i~~Gv~~~~~~d---~~~~~~G~~~~l~s~~~~ 168 (204)
++|++++|++|+||++-|+.+.+|++++.|+++|+|.+.....++.+++.|..+..-.| ..+++.|.++++.++++.
T Consensus 118 fnnlcL~yVgVaFYyvgRsLttvFtVlLtyvllkqkTs~~~~~~C~lIi~GF~lGvdqE~~~~~ls~~GvifGVlaSl~v 197 (347)
T KOG1442|consen 118 FNNLCLKYVGVAFYYVGRSLTTVFTVLLTYVLLKQKTSFFALGCCLLIILGFGLGVDQEGSTGTLSWIGVIFGVLASLAV 197 (347)
T ss_pred ccceehhhcceEEEEeccchhhhHHHHhHHhhcccccccccceeehhheehheeccccccccCccchhhhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999988777 568999999999999999
Q ss_pred HHHHHHHHhh
Q 043019 169 AMQQYHVILN 178 (204)
Q Consensus 169 a~~~i~~~~~ 178 (204)
|+..+++||.
T Consensus 198 Alnaiytkk~ 207 (347)
T KOG1442|consen 198 ALNAIYTKKV 207 (347)
T ss_pred HHHHHhhhee
Confidence 9999999983
No 9
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=99.45 E-value=2.1e-14 Score=120.32 Aligned_cols=158 Identities=16% Similarity=0.141 Sum_probs=127.0
Q ss_pred hhhHHHHHHHHHHHHHHH-HHHhCCccCCCCCchhHHHHHHHHHHHHHHhhhhhccc-hHHHHHHHhhhhhHHHHHHHHH
Q 043019 45 ATTLTGLHFATTTMLTTF-LRWLGYIQTSHLPFSELVRFVVFANFSIVGMNVSLMWN-SVGFYQIAKLSMIPVSCFLEVV 122 (204)
Q Consensus 45 P~~Lt~~q~~~~~~~~~i-~~~~~~~~~~~~~~~~~~plsl~~~~~i~~~n~sl~~~-svs~~qi~K~~~pv~~~l~~~~ 122 (204)
..++|+.||++.++--.+ ..+++..| +++|+|.+......|.+.-.++|.+++++ |+|.|.++|+.+++.+|.++++
T Consensus 33 gNLITFaqFlFia~eGlif~skf~~~k-~kiplk~Y~i~V~mFF~vnv~NN~al~f~I~~PlHiIfRsgsll~nM~~g~i 111 (330)
T KOG1583|consen 33 GNLITFAQFLFIATEGLIFTSKFFTVK-PKIPLKDYAITVAMFFIVNVTNNYALKFNIPMPLHIIFRSGSLLANMILGWI 111 (330)
T ss_pred eeehHHHHHHHHHHhceeeeccccccC-CCCchhhhheehheeeeeeeeccceeeecccceEEEEEecCcHHHHHHHHHH
Confidence 588999999986655444 23444444 67888888877776666678999999987 9999999999999999999999
Q ss_pred hcceecCcchhhhhhhhhhhheeeeec---ccc--------------cc--HHHHHHHHHHHHHHHHHHHHHHh-hhccc
Q 043019 123 LDKVRYSRDTKLSILLVLFGVGVCTVT---DVS--------------VN--AKGFIAAFVAVWSTAMQQYHVIL-NISVS 182 (204)
Q Consensus 123 ~~~~~~s~~~~~sl~~i~~Gv~~~~~~---d~~--------------~~--~~G~~~~l~s~~~~a~~~i~~~~-~~~~~ 182 (204)
+.|||+|.+++.|++.+.+|+.+++.. |.+ +- ..|+.+..++.+.+|.-.++.++ .++..
T Consensus 112 l~~k~Ys~~Qy~Sv~~iTiGiiIcTl~s~~d~~~~~~~l~~~~~~~~~~~w~iGi~lL~~al~~sa~mgiyqE~~Y~kyG 191 (330)
T KOG1583|consen 112 LLGKRYSLRQYSSVLMITIGIIICTLFSSKDGRSKLSGLDSGSAQSDFFWWLIGIALLVFALLLSAYMGIYQETTYQKYG 191 (330)
T ss_pred hccceeehhhhhhHHhhhhhheeEEeecCcchhhhhcccccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999998854 211 11 35888888899999877777666 24566
Q ss_pred cccccchhhhhhhhhceeeee
Q 043019 183 ITHLFLCLNHHIVCIPVVVVV 203 (204)
Q Consensus 183 ~~~~~~~~~~~~~slp~~~~~ 203 (204)
+.+.+.++|+|.+|+|.+++.
T Consensus 192 Kh~~EalFytH~LsLP~Flf~ 212 (330)
T KOG1583|consen 192 KHWKEALFYTHFLSLPLFLFM 212 (330)
T ss_pred CChHHHHHHHHHhccchHHHh
Confidence 666677999999999998753
No 10
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=99.38 E-value=5.8e-13 Score=111.61 Aligned_cols=147 Identities=16% Similarity=0.109 Sum_probs=127.0
Q ss_pred HHHHHhhhcCCC-chhhHHHHHHHHHHHHHHHHHHhCCccCCCCCchhHHHHHHHHHHHHHHhhhhhccchHHHHHHHhh
Q 043019 32 VNKALMATYGFS-FATTLTGLHFATTTMLTTFLRWLGYIQTSHLPFSELVRFVVFANFSIVGMNVSLMWNSVGFYQIAKL 110 (204)
Q Consensus 32 ~NK~il~~~~f~-~P~~Lt~~q~~~~~~~~~i~~~~~~~~~~~~~~~~~~plsl~~~~~i~~~n~sl~~~svs~~qi~K~ 110 (204)
..+++++..||+ |.|.+|..|+++-..+-.+....=..+++..|||....++.+..+++.++|-|+.|.+.|...++|+
T Consensus 61 ~qElif~~~gfkp~GWylTlvQf~~Ysg~glie~~~~~~k~r~iP~rtY~~la~~t~gtmGLsn~SlgYLNYPtQviFKc 140 (367)
T KOG1582|consen 61 LQELIFNVEGFKPFGWYLTLVQFLVYSGFGLIELQLIQTKRRVIPWRTYVILAFLTVGTMGLSNGSLGYLNYPTQVIFKC 140 (367)
T ss_pred HHHHHhccccCcccchHHHHHHHHHHHhhhheEEEeecccceecchhHhhhhHhhhhhccccCcCccccccCcHHHHHHh
Confidence 578899999995 9999999999986555444222211223456899999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHhcceecCcchhhhhhhhhhhheeeeeccc----cccHHHHHHHHHHHHHHHHHHHHHHhh
Q 043019 111 SMIPVSCFLEVVLDKVRYSRDTKLSILLVLFGVGVCTVTDV----SVNAKGFIAAFVAVWSTAMQQYHVILN 178 (204)
Q Consensus 111 ~~pv~~~l~~~~~~~~~~s~~~~~sl~~i~~Gv~~~~~~d~----~~~~~G~~~~l~s~~~~a~~~i~~~~~ 178 (204)
+..+-+++.+.++.++|+.+..+.+...+++|.++.+..|. +||..|+++...+.+++|.-.=..+|.
T Consensus 141 cKliPVmiggifIqGkRY~v~d~~aA~lm~lGli~FTLADs~~sPNF~~~Gv~mIsgALl~DA~iGNvQEk~ 212 (367)
T KOG1582|consen 141 CKLIPVMIGGIFIQGKRYGVHDYIAAMLMSLGLIWFTLADSQTSPNFNLIGVMMISGALLADAVIGNVQEKA 212 (367)
T ss_pred hhhhhhhheeeeeccccccHHHHHHHHHHHHHHHhhhhcccccCCCcceeeHHHHHHHHHHHHHhhHHHHHH
Confidence 99999999999999999999999999999999999999986 588999999999999999766666663
No 11
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=99.30 E-value=9.2e-11 Score=102.43 Aligned_cols=179 Identities=16% Similarity=0.121 Sum_probs=132.7
Q ss_pred HHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHhCCcc-----CCCCCchhHHHHHHHHHHHHHHhhhhhc
Q 043019 24 VTSVGIIMVNKALMATYGFSFATTLTGLHFATTTMLTTFLRWLGYIQ-----TSHLPFSELVRFVVFANFSIVGMNVSLM 98 (204)
Q Consensus 24 ~~S~~~~~~NK~il~~~~f~~P~~Lt~~q~~~~~~~~~i~~~~~~~~-----~~~~~~~~~~plsl~~~~~i~~~n~sl~ 98 (204)
++..+....+..+-+. |++.|.+-+++.++.-.+.-......++.+ ..+.++++.+.+|++-...-.+.+.|++
T Consensus 23 l~~~~t~~~s~~l~~~-~~~~P~~Qs~~~Y~~l~~vy~~~~~~r~~~~~~~~~~~~~~w~y~lla~~Dv~aN~~~v~a~~ 101 (334)
T PF06027_consen 23 LCITGTGTFSSLLANK-GVNIPTFQSFFNYVLLALVYTPILLYRRGFKKWLKVLKRPWWKYFLLALLDVEANYLVVLAYQ 101 (334)
T ss_pred HHHHhHHHHHHHHHhc-CccCcHHHHHHHHHHHHHHHhhhhhhccccccchhhcchhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3334444456665555 899999988887776554433322222111 1234577888899998888999999999
Q ss_pred cchHHHHHHHhhhhhHHHHHHHHHhcceecCcchhhhhhhhhhhheeeeeccccc---------cHHHHHHHHHHHHHHH
Q 043019 99 WNSVGFYQIAKLSMIPVSCFLEVVLDKVRYSRDTKLSILLVLFGVGVCTVTDVSV---------NAKGFIAAFVAVWSTA 169 (204)
Q Consensus 99 ~~svs~~qi~K~~~pv~~~l~~~~~~~~~~s~~~~~sl~~i~~Gv~~~~~~d~~~---------~~~G~~~~l~s~~~~a 169 (204)
|.+++-.|+++..+.|++++++++++|+|+++.++.++++.++|+++....|... ...|=++++.+..++|
T Consensus 102 yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD~~~~~~~~~~~~~i~GDll~l~~a~lya 181 (334)
T PF06027_consen 102 YTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSDVLSGSDSSSGSNPILGDLLALLGAILYA 181 (334)
T ss_pred cccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeecccccccCCCCCccchhHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999988887432 3789999999999999
Q ss_pred HHHHHHHhhhcc-ccccccch--hhhhhhhhceeeee
Q 043019 170 MQQYHVILNISV-SITHLFLC--LNHHIVCIPVVVVV 203 (204)
Q Consensus 170 ~~~i~~~~~~~~-~~~~~~~~--~~~~~~slp~~~~~ 203 (204)
+++++.|+..+. +.++..++ ..+.+.+.|.+.+.
T Consensus 182 ~~nV~~E~~v~~~~~~~~lg~~Glfg~ii~~iq~~il 218 (334)
T PF06027_consen 182 VSNVLEEKLVKKAPRVEFLGMLGLFGFIISGIQLAIL 218 (334)
T ss_pred HHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHhe
Confidence 999999983222 22222222 34556666655443
No 12
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=99.28 E-value=6e-12 Score=103.77 Aligned_cols=137 Identities=13% Similarity=0.121 Sum_probs=119.1
Q ss_pred CCCchhhHHHHHHHHHHHHHHHHHHhCC-ccCCCCCchhHHHHHHHHHHHHHHhhhhhccchHHHHHHHhhhhhHHHHHH
Q 043019 41 GFSFATTLTGLHFATTTMLTTFLRWLGY-IQTSHLPFSELVRFVVFANFSIVGMNVSLMWNSVGFYQIAKLSMIPVSCFL 119 (204)
Q Consensus 41 ~f~~P~~Lt~~q~~~~~~~~~i~~~~~~-~~~~~~~~~~~~plsl~~~~~i~~~n~sl~~~svs~~qi~K~~~pv~~~l~ 119 (204)
.|.|...|.++|+.+..++..+....+. .+.++.+-+-....++.+.+.+..+|.+++|+|.|...+-|++.|+.++++
T Consensus 49 ~FTfalaLVf~qC~~N~vfAkvl~~ir~~~~~D~t~~~~YaAcs~sYLlAMVssN~Alq~vpYPTqVlgKScKPIPVMil 128 (337)
T KOG1580|consen 49 KFTFALALVFFQCTANTVFAKVLFLIRKKTEIDNTPTKMYAACSASYLLAMVSSNQALQYVPYPTQVLGKSCKPIPVMIL 128 (337)
T ss_pred eehHHHHHHHHHHHHHHHHHHhheeecccccccCCcchHHHHHHHHHHHHHHhccchhcccCCcHHHhcccCCCcceeee
Confidence 3889999999999999999988655433 344555667888999999999999999999999999999999999999999
Q ss_pred HHHhcceecCcchhhhhhhhhhhheeeeecccc-------ccHHHHHHHHHHHHHHHHHHHHHHh
Q 043019 120 EVVLDKVRYSRDTKLSILLVLFGVGVCTVTDVS-------VNAKGFIAAFVAVWSTAMQQYHVIL 177 (204)
Q Consensus 120 ~~~~~~~~~s~~~~~sl~~i~~Gv~~~~~~d~~-------~~~~G~~~~l~s~~~~a~~~i~~~~ 177 (204)
+.++.+|+++|+++++++.|+.||++.-+.|.+ ..-.|-.+.++|...+++......+
T Consensus 129 GVl~~~KsY~w~kY~cVL~IV~GValFmYK~~Kv~g~e~~t~g~GElLL~lSL~mDGlTg~~Qdr 193 (337)
T KOG1580|consen 129 GVLFAHKSYHWRKYCCVLMIVVGVALFMYKENKVGGAEDKTFGFGELLLILSLAMDGLTGSIQDR 193 (337)
T ss_pred ehhhhcccccHHHHHHHHHHHHHHHHhhccccccCCCcccccchHHHHHHHHHHhcccchhHHHH
Confidence 999999999999999999999999999988654 3357888999999988877666666
No 13
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=99.23 E-value=6.6e-10 Score=94.51 Aligned_cols=148 Identities=11% Similarity=0.002 Sum_probs=126.8
Q ss_pred cCCCchhhHHHHHHHHHHHHHHHHHHhCCcc-CCCCCchhHHHHHHHHHHHHHHhhhhhccchHHHHHHHhhhhhHHHHH
Q 043019 40 YGFSFATTLTGLHFATTTMLTTFLRWLGYIQ-TSHLPFSELVRFVVFANFSIVGMNVSLMWNSVGFYQIAKLSMIPVSCF 118 (204)
Q Consensus 40 ~~f~~P~~Lt~~q~~~~~~~~~i~~~~~~~~-~~~~~~~~~~plsl~~~~~i~~~n~sl~~~svs~~qi~K~~~pv~~~l 118 (204)
.+|..|.++..+|-+.+.+..++.-.....+ ..+-++++..-+|+....+-.++-.||+|+|.|.+.+.|++.-+.+++
T Consensus 46 ~rF~~~~fL~~~q~l~~~~~s~~~l~~~k~~~~~~apl~~y~~is~tn~~s~~~~yeaLKyvSyPtq~LaKscKmIPVml 125 (327)
T KOG1581|consen 46 ERFEHSLFLVFCQRLVALLVSYAMLKWWKKELSGVAPLYKYSLISFTNTLSSWCGYEALKYVSYPTQTLAKSCKMIPVML 125 (327)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHhcccccCCCCCchhHHhHHHHHhhcchHHHHHHHHhccchHHHHHHHhhhhHHHH
Confidence 4688899999999999998887754433322 334468999999999999999999999999999999999999999999
Q ss_pred HHHHhcceecCcchhhhhhhhhhhheeeeeccc---------cccHHHHHHHHHHHHHHHHHHHHHHhhhccccccccch
Q 043019 119 LEVVLDKVRYSRDTKLSILLVLFGVGVCTVTDV---------SVNAKGFIAAFVAVWSTAMQQYHVILNISVSITHLFLC 189 (204)
Q Consensus 119 ~~~~~~~~~~s~~~~~sl~~i~~Gv~~~~~~d~---------~~~~~G~~~~l~s~~~~a~~~i~~~~~~~~~~~~~~~~ 189 (204)
.+.+++++|++..++++..++.+|+.+....+. +.+++|+.++..+..++++.+-+.++ .-++|++++.
T Consensus 126 mg~Lvy~~ky~~~eYl~~~LIs~GvsiF~l~~~s~s~~~~g~~ns~~G~~Ll~~~L~fDgfTn~tQd~--lf~~~k~s~~ 203 (327)
T KOG1581|consen 126 MGTLVYGRKYSSFEYLVAFLISLGVSIFSLFPNSDSSSKSGRENSPIGILLLFGYLLFDGFTNATQDS--LFKKYKVSSL 203 (327)
T ss_pred HHHHHhcCccCcHHHHHHHHHHhheeeEEEecCCCCccccCCCCchHhHHHHHHHHHHHhhHHhHHHH--HhccCCccHh
Confidence 999999999999999999999999999887642 25689999999999999999999888 3346666544
No 14
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=99.19 E-value=6.4e-10 Score=92.79 Aligned_cols=142 Identities=14% Similarity=-0.004 Sum_probs=116.3
Q ss_pred HHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHhCCccCCCCCchhHHHHHH-HHHHHHHHhhhhhccchHHHHHHHh
Q 043019 31 MVNKALMATYGFSFATTLTGLHFATTTMLTTFLRWLGYIQTSHLPFSELVRFVV-FANFSIVGMNVSLMWNSVGFYQIAK 109 (204)
Q Consensus 31 ~~NK~il~~~~f~~P~~Lt~~q~~~~~~~~~i~~~~~~~~~~~~~~~~~~plsl-~~~~~i~~~n~sl~~~svs~~qi~K 109 (204)
...|+.+++ +.| |..+...+++.+.+.+....+.+ +++-+++..+..+. .......+-..|+++.|.+...++.
T Consensus 6 ~~~k~~~~~-~~~-~~~~~~~r~~~~~l~l~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~~~~~~~ii~ 80 (260)
T TIGR00950 6 VVIGQYLEG-QVP-LYFAVFRRLIFALLLLLPLLRRR---PPLKRLLRLLLLGALQIGVFYVLYFVAVKRLPVGEAALLL 80 (260)
T ss_pred HHHHHHHhc-CCC-HHHHHHHHHHHHHHHHHHHHHhc---cCHhHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHH
Confidence 367888775 345 88889999998888776654443 22224455555554 5677778889999999999999999
Q ss_pred hhhhHHHHHHHHHhcceecCcchhhhhhhhhhhheeeeec-cccccHHHHHHHHHHHHHHHHHHHHHHh
Q 043019 110 LSMIPVSCFLEVVLDKVRYSRDTKLSILLVLFGVGVCTVT-DVSVNAKGFIAAFVAVWSTAMQQYHVIL 177 (204)
Q Consensus 110 ~~~pv~~~l~~~~~~~~~~s~~~~~sl~~i~~Gv~~~~~~-d~~~~~~G~~~~l~s~~~~a~~~i~~~~ 177 (204)
.+.|+++++++.+++|||++++++.++.+..+|+.+...+ +.+.+..|..+++.+.++.+.+.+..||
T Consensus 81 ~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~~~~~~~~~~G~~~~l~a~~~~a~~~~~~k~ 149 (260)
T TIGR00950 81 YLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLSDGNLSINPAGLLLGLGSGISFALGTVLYKR 149 (260)
T ss_pred hhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhccCCcccccHHHHHHHHHHHHHHHHHHHHHhH
Confidence 9999999999999999999999999999999998886544 3456788999999999999999999998
No 15
>PRK11689 aromatic amino acid exporter; Provisional
Probab=99.12 E-value=4.5e-09 Score=90.15 Aligned_cols=142 Identities=11% Similarity=0.052 Sum_probs=108.9
Q ss_pred HHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHhCCccCCCCCchhHHHHHHHHHHHHHHhhhhhcc----chHHHHH
Q 043019 31 MVNKALMATYGFSFATTLTGLHFATTTMLTTFLRWLGYIQTSHLPFSELVRFVVFANFSIVGMNVSLMW----NSVGFYQ 106 (204)
Q Consensus 31 ~~NK~il~~~~f~~P~~Lt~~q~~~~~~~~~i~~~~~~~~~~~~~~~~~~plsl~~~~~i~~~n~sl~~----~svs~~q 106 (204)
...|...++ +| |..+.++++..+.+......+. .+.++.+++..+.-++.+.+...+.+.++++ .+.....
T Consensus 21 ~~~k~~~~~--~~-P~~~~~~R~~~a~l~l~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~a~~a~ 95 (295)
T PRK11689 21 GLIRGVSES--LG-PVGGAAMIYSVSGLLLLLTVGF--PRLRQFPKRYLLAGGLLFVSYEICLALSLGYANTRRQAIEVG 95 (295)
T ss_pred HHHHHHHcc--CC-hHHHHHHHHHHHHHHHHHHccc--cccccccHHHHHHHhHHHHHHHHHHHHHHHHhhccccchHHH
Confidence 467887765 77 9999999999988877665321 1122223344444445555666666666654 4666678
Q ss_pred HHhhhhhHHHHHHHHHhcceecCcchhhhhhhhhhhheeeeecccc-----------ccHHHHHHHHHHHHHHHHHHHHH
Q 043019 107 IAKLSMIPVSCFLEVVLDKVRYSRDTKLSILLVLFGVGVCTVTDVS-----------VNAKGFIAAFVAVWSTAMQQYHV 175 (204)
Q Consensus 107 i~K~~~pv~~~l~~~~~~~~~~s~~~~~sl~~i~~Gv~~~~~~d~~-----------~~~~G~~~~l~s~~~~a~~~i~~ 175 (204)
++-.+.|+++++++.+++|||++++++.++++-.+|+.+...+|.. .+..|..+++.+.++.|.|.++.
T Consensus 96 ~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~A~~~v~~ 175 (295)
T PRK11689 96 MVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLGGDNGLSLAELINNIASNPLSYGLAFIGAFIWAAYCNVT 175 (295)
T ss_pred HHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheecCCccchhhhhhhccccChHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999999999999999999999999887655431 23569999999999999999999
Q ss_pred Hh
Q 043019 176 IL 177 (204)
Q Consensus 176 ~~ 177 (204)
||
T Consensus 176 k~ 177 (295)
T PRK11689 176 RK 177 (295)
T ss_pred hh
Confidence 99
No 16
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=99.07 E-value=8.1e-09 Score=88.37 Aligned_cols=143 Identities=13% Similarity=0.063 Sum_probs=111.2
Q ss_pred HHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHhCCcc-CCCCCchhHHHHHHHH-HHHHHHhhhhh-ccchHHHHHH
Q 043019 31 MVNKALMATYGFSFATTLTGLHFATTTMLTTFLRWLGYIQ-TSHLPFSELVRFVVFA-NFSIVGMNVSL-MWNSVGFYQI 107 (204)
Q Consensus 31 ~~NK~il~~~~f~~P~~Lt~~q~~~~~~~~~i~~~~~~~~-~~~~~~~~~~plsl~~-~~~i~~~n~sl-~~~svs~~qi 107 (204)
..-|...++ .+ |..++.+++.++.+...+....++.+ +++-++++....+.+. .....+-+.+. ++.|.+...+
T Consensus 25 ~~~K~~~~~--~~-p~~~~~~R~~~a~l~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~a~~a~~ 101 (292)
T PRK11272 25 LVIRIGVES--WP-PLMMAGVRFLIAGILLLAFLLLRGHPLPTLRQWLNAALIGLLLLAVGNGMVTVAEHQNVPSGIAAV 101 (292)
T ss_pred HHHHHHhcc--CC-HHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHH
Confidence 356766653 66 99999999999988876644333222 1111344555666543 34556667787 9999999999
Q ss_pred HhhhhhHHHHHHHHHhcceecCcchhhhhhhhhhhheeeeec-cccccHHHHHHHHHHHHHHHHHHHHHHh
Q 043019 108 AKLSMIPVSCFLEVVLDKVRYSRDTKLSILLVLFGVGVCTVT-DVSVNAKGFIAAFVAVWSTAMQQYHVIL 177 (204)
Q Consensus 108 ~K~~~pv~~~l~~~~~~~~~~s~~~~~sl~~i~~Gv~~~~~~-d~~~~~~G~~~~l~s~~~~a~~~i~~~~ 177 (204)
+-.+.|+++++++.+ +|||++++++.++++..+|+.+...+ +.+.+..|..+++.+.++.|.|.++.||
T Consensus 102 l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~~~~~~~~~~~G~l~~l~a~~~~a~~~~~~~~ 171 (292)
T PRK11272 102 VVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLNSGGNLSGNPWGAILILIASASWAFGSVWSSR 171 (292)
T ss_pred HHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHhcCcccccchHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999986 69999999999999999999887543 4456778999999999999999999988
No 17
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=98.96 E-value=3.2e-08 Score=84.94 Aligned_cols=138 Identities=17% Similarity=0.177 Sum_probs=106.3
Q ss_pred HHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHhCCccCCCCCchhHHHHHHHHH-HHHHHhhhhhcc-chHHHHHHHh
Q 043019 32 VNKALMATYGFSFATTLTGLHFATTTMLTTFLRWLGYIQTSHLPFSELVRFVVFAN-FSIVGMNVSLMW-NSVGFYQIAK 109 (204)
Q Consensus 32 ~NK~il~~~~f~~P~~Lt~~q~~~~~~~~~i~~~~~~~~~~~~~~~~~~plsl~~~-~~i~~~n~sl~~-~svs~~qi~K 109 (204)
.-|..+++ ++ |..+.++++.++.+......+ .++.+++..+..++... ....+...++++ .|.+...++-
T Consensus 22 ~~k~~~~~--~~-p~~~~~~R~~~a~~~l~~~~~-----~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~a~~a~~l~ 93 (299)
T PRK11453 22 VIKVGLHN--MP-PLMLAGLRFMLVAFPAIFFVA-----RPKVPLNLLLGYGLTISFGQFAFLFCAINFGMPAGLASLVL 93 (299)
T ss_pred HHHHHHhc--CC-HHHHHHHHHHHHHHHHHHHhc-----CCCCchHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 44777754 77 999999999987655443321 12234455555555432 333455667777 6889999999
Q ss_pred hhhhHHHHHHHHHhcceecCcchhhhhhhhhhhheeeeecc---ccccHHHHHHHHHHHHHHHHHHHHHHh
Q 043019 110 LSMIPVSCFLEVVLDKVRYSRDTKLSILLVLFGVGVCTVTD---VSVNAKGFIAAFVAVWSTAMQQYHVIL 177 (204)
Q Consensus 110 ~~~pv~~~l~~~~~~~~~~s~~~~~sl~~i~~Gv~~~~~~d---~~~~~~G~~~~l~s~~~~a~~~i~~~~ 177 (204)
.+.|+++.+++++++|||++++++.++++..+|+.+...++ .+.+..|..+++.+.++.|.|.++.||
T Consensus 94 ~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~~~~~~~~~~~~G~~l~l~aal~~a~~~v~~~~ 164 (299)
T PRK11453 94 QAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIEDSLNGQHVAMLGFMLTLAAAFSWACGNIFNKK 164 (299)
T ss_pred HhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999988776442 334568999999999999999999998
No 18
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=98.96 E-value=4.1e-08 Score=86.78 Aligned_cols=152 Identities=12% Similarity=0.082 Sum_probs=116.6
Q ss_pred HHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHH-hCC-ccCCCCCchh---HHHHHHHHHHHHHHhhhhhc
Q 043019 24 VTSVGIIMVNKALMATYGFSFATTLTGLHFATTTMLTTFLRW-LGY-IQTSHLPFSE---LVRFVVFANFSIVGMNVSLM 98 (204)
Q Consensus 24 ~~S~~~~~~NK~il~~~~f~~P~~Lt~~q~~~~~~~~~i~~~-~~~-~~~~~~~~~~---~~plsl~~~~~i~~~n~sl~ 98 (204)
....++..+-|..++ .|.+ |..+.++++.++.+.+..... .++ .+.++.++++ ...++++......+.+.+++
T Consensus 23 ~~~~~~~~~~k~a~~-~G~~-~~~~~~~R~~iA~l~Ll~~~~~~~~~~~~~~~~~~~~~~l~l~g~~g~~~~~~~~~gl~ 100 (358)
T PLN00411 23 TSVVGISTLFKVATS-KGLN-IYPFLGYSYLLASLLLLPSLFFTNRSRSLPPLSVSILSKIGLLGFLGSMYVITGYIGIE 100 (358)
T ss_pred HHHHHHHHHHHHHHH-CCCC-ccHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 566677788899886 5787 888999999998887765432 221 2223334444 44444444344457899999
Q ss_pred cchHHHHHHHhhhhhHHHHHHHHHh------cceecCcchhhhhhhhhhhheeeeec-cc--------------------
Q 043019 99 WNSVGFYQIAKLSMIPVSCFLEVVL------DKVRYSRDTKLSILLVLFGVGVCTVT-DV-------------------- 151 (204)
Q Consensus 99 ~~svs~~qi~K~~~pv~~~l~~~~~------~~~~~s~~~~~sl~~i~~Gv~~~~~~-d~-------------------- 151 (204)
|.|.+...++-++.|+++++++.++ ++||.+++++.++++-.+|+.+.... +.
T Consensus 101 ~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~ 180 (358)
T PLN00411 101 YSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFYHGPRVFVASSPPYLNFRQLSPPL 180 (358)
T ss_pred hccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHccCccccccccccccccccccccc
Confidence 9999999999999999999999999 69999999999999999998874431 11
Q ss_pred ---ccc-HHHHHHHHHHHHHHHHHHHHHHh
Q 043019 152 ---SVN-AKGFIAAFVAVWSTAMQQYHVIL 177 (204)
Q Consensus 152 ---~~~-~~G~~~~l~s~~~~a~~~i~~~~ 177 (204)
+-+ ..|..+++.+.++.|+|.+..++
T Consensus 181 ~~~~~~~~lG~~l~l~aa~~wa~~~il~~~ 210 (358)
T PLN00411 181 SSSNSDWLIGGALLTIQGIFVSVSFILQAH 210 (358)
T ss_pred CCCcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 112 45999999999999999999988
No 19
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=98.95 E-value=2.4e-08 Score=83.63 Aligned_cols=138 Identities=16% Similarity=0.027 Sum_probs=103.8
Q ss_pred HHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHH-HhCCcc-----CCCCCchh----HHHHHHHHHHHHHHhhhhhccch
Q 043019 32 VNKALMATYGFSFATTLTGLHFATTTMLTTFLR-WLGYIQ-----TSHLPFSE----LVRFVVFANFSIVGMNVSLMWNS 101 (204)
Q Consensus 32 ~NK~il~~~~f~~P~~Lt~~q~~~~~~~~~i~~-~~~~~~-----~~~~~~~~----~~plsl~~~~~i~~~n~sl~~~s 101 (204)
.-|. .. +.+ |..+++++++++.+.+.+.. ..+..+ .++.++++ ....+++......+-..++++.|
T Consensus 20 ~~k~-~~--~~~-~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~~~ 95 (256)
T TIGR00688 20 YSKL-LK--PLP-ATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCGLLIGFNWWLFIWAVNNGS 95 (256)
T ss_pred HHHH-hc--cCC-HHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHcch
Confidence 4666 33 367 99999999999887765432 222111 11112222 33455667778889999999999
Q ss_pred HHHHHHHhhhhhHHHHHHHHHhcceecCcchhhhhhhhhhhheeeeeccccccHHHHHHHHHHHHHHHHHHHHHHh
Q 043019 102 VGFYQIAKLSMIPVSCFLEVVLDKVRYSRDTKLSILLVLFGVGVCTVTDVSVNAKGFIAAFVAVWSTAMQQYHVIL 177 (204)
Q Consensus 102 vs~~qi~K~~~pv~~~l~~~~~~~~~~s~~~~~sl~~i~~Gv~~~~~~d~~~~~~G~~~~l~s~~~~a~~~i~~~~ 177 (204)
++..+++-.+.|+++++++.+++|||.+++++.++++..+|+.+...++.+.+ .+++.+.++.|.|.+..|+
T Consensus 96 ~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~~~~~~~~----~~~l~aa~~~a~~~i~~~~ 167 (256)
T TIGR00688 96 SLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNIVLKGSLP----WEALVLAFSFTAYGLIRKA 167 (256)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHcCCch----HHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999987543322222 3567889999999999888
No 20
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=98.89 E-value=1.8e-08 Score=84.65 Aligned_cols=107 Identities=19% Similarity=0.176 Sum_probs=92.2
Q ss_pred hhHHHHHHHHHHHHHHhhhhhccchHHHHHHHhhhhhHHHHHHHHHhcceecCcchhhhhhhhhhhheeeeeccccc---
Q 043019 77 SELVRFVVFANFSIVGMNVSLMWNSVGFYQIAKLSMIPVSCFLEVVLDKVRYSRDTKLSILLVLFGVGVCTVTDVSV--- 153 (204)
Q Consensus 77 ~~~~plsl~~~~~i~~~n~sl~~~svs~~qi~K~~~pv~~~l~~~~~~~~~~s~~~~~sl~~i~~Gv~~~~~~d~~~--- 153 (204)
.+...-|++++..-.+...++++.+.+.||+++.+.+++|+++.++++|||.++++|.++.+++.|+.+...++...
T Consensus 18 ~~~~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~~~~~ 97 (244)
T PF04142_consen 18 LKLAVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQSSDN 97 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCcccccc
Confidence 34445566788888888899999999999999999999999999999999999999999999999999977653221
Q ss_pred --------------cHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 043019 154 --------------NAKGFIAAFVAVWSTAMQQYHVILNISVSI 183 (204)
Q Consensus 154 --------------~~~G~~~~l~s~~~~a~~~i~~~~~~~~~~ 183 (204)
...|+...+.+++++|+..++.+|.++.++
T Consensus 98 ~~~~~~~~~~~~~~~~~G~~~vl~~~~~S~~agVy~E~~lK~~~ 141 (244)
T PF04142_consen 98 SSSSSVHHDASNQNPLLGLLAVLAAAFLSGFAGVYFEKLLKRSN 141 (244)
T ss_pred ccccccccccccchhHhHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 258999999999999999999999655544
No 21
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=98.87 E-value=7.3e-08 Score=82.70 Aligned_cols=145 Identities=13% Similarity=0.010 Sum_probs=105.7
Q ss_pred HHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHh-CCccC-C-CC-CchhHH--HH-HHHHHHHHHHhhhh
Q 043019 24 VTSVGIIMVNKALMATYGFSFATTLTGLHFATTTMLTTFLRWL-GYIQT-S-HL-PFSELV--RF-VVFANFSIVGMNVS 96 (204)
Q Consensus 24 ~~S~~~~~~NK~il~~~~f~~P~~Lt~~q~~~~~~~~~i~~~~-~~~~~-~-~~-~~~~~~--pl-sl~~~~~i~~~n~s 96 (204)
..+..-.+. |.. . +.+ |..+..+|++++.+.+...... +..+. + +. +++++. .. ++.......+-+.+
T Consensus 19 ~wg~~~~~~-k~~-~--~~~-~~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 93 (296)
T PRK15430 19 IWGIAPAYF-KLI-Y--YVP-ADEILTHRVIWSFFFMVVLMSICRQWSYLKTLIQTPQKIFMLAVSAVLIGGNWLLFIWA 93 (296)
T ss_pred HHHHHHHHH-HHh-c--CCC-HHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344 764 2 367 9999999999988765543222 21111 0 01 233322 23 34566778899999
Q ss_pred hccchHHHHHHHhhhhhHHHHHHHHHhcceecCcchhhhhhhhhhhheeeeeccccccHHHHHHHHHHHHHHHHHHHHHH
Q 043019 97 LMWNSVGFYQIAKLSMIPVSCFLEVVLDKVRYSRDTKLSILLVLFGVGVCTVTDVSVNAKGFIAAFVAVWSTAMQQYHVI 176 (204)
Q Consensus 97 l~~~svs~~qi~K~~~pv~~~l~~~~~~~~~~s~~~~~sl~~i~~Gv~~~~~~d~~~~~~G~~~~l~s~~~~a~~~i~~~ 176 (204)
+++.|++...++-.+.|+++++++++++|||.+++++.++++...|+.+....+.+.. .+++.+.++.|.|.+..|
T Consensus 94 ~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~~~~~~~~----~~~l~aa~~~a~~~i~~r 169 (296)
T PRK15430 94 VNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQLWTFGSLP----IIALGLAFSFAFYGLVRK 169 (296)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHcCCcc----HHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999987653333222 357778899999999988
Q ss_pred h
Q 043019 177 L 177 (204)
Q Consensus 177 ~ 177 (204)
+
T Consensus 170 ~ 170 (296)
T PRK15430 170 K 170 (296)
T ss_pred h
Confidence 8
No 22
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=98.77 E-value=5e-07 Score=77.39 Aligned_cols=139 Identities=14% Similarity=-0.014 Sum_probs=103.6
Q ss_pred HHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHhCCccCCCCCchhHHHHHHHHHHHHHHhhhhhccchHHHHHHHhh
Q 043019 31 MVNKALMATYGFSFATTLTGLHFATTTMLTTFLRWLGYIQTSHLPFSELVRFVVFANFSIVGMNVSLMWNSVGFYQIAKL 110 (204)
Q Consensus 31 ~~NK~il~~~~f~~P~~Lt~~q~~~~~~~~~i~~~~~~~~~~~~~~~~~~plsl~~~~~i~~~n~sl~~~svs~~qi~K~ 110 (204)
...|+.+++ +| |..+.++|++++.+.+.+..+.+..+.++-+++..+..+++......+...++++.|.+...++-.
T Consensus 29 ~~~K~~~~~--~~-~~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~a~~l~~ 105 (293)
T PRK10532 29 SLAKSLFPL--VG-APGVTALRLALGTLILIAIFKPWRLRFAKEQRLPLLFYGVSLGGMNYLFYLSIQTVPLGIAVALEF 105 (293)
T ss_pred HHHHHHHHH--cC-HHHHHHHHHHHHHHHHHHHHhHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 368998875 67 899999999999888776543222122222345566777777777778889999999999999999
Q ss_pred hhhHHHHHHHHHhcceecCcchhhhhhhhhhhheeeeec---cccccHHHHHHHHHHHHHHHHHHHHHHhh
Q 043019 111 SMIPVSCFLEVVLDKVRYSRDTKLSILLVLFGVGVCTVT---DVSVNAKGFIAAFVAVWSTAMQQYHVILN 178 (204)
Q Consensus 111 ~~pv~~~l~~~~~~~~~~s~~~~~sl~~i~~Gv~~~~~~---d~~~~~~G~~~~l~s~~~~a~~~i~~~~~ 178 (204)
+.|+++++++. ||++...+ +.+...|+.+.... +.+.+..|..+++.+.++.|.|.+..||.
T Consensus 106 t~Pi~~~ll~~----~~~~~~~~--~~i~~~Gv~li~~~~~~~~~~~~~G~ll~l~aa~~~a~~~v~~r~~ 170 (293)
T PRK10532 106 TGPLAVALFSS----RRPVDFVW--VVLAVLGLWFLLPLGQDVSHVDLTGAALALGAGACWAIYILSGQRA 170 (293)
T ss_pred HHHHHHHHHhc----CChHHHHH--HHHHHHHHheeeecCCCcccCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998873 55554444 44557787664422 23456789999999999999999999983
No 23
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=98.76 E-value=4.2e-08 Score=72.10 Aligned_cols=112 Identities=17% Similarity=0.185 Sum_probs=89.2
Q ss_pred HHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHh-CCccCCCCC---chhHHHHHHH-HHHHHHHhhhhhccchHHHH
Q 043019 31 MVNKALMATYGFSFATTLTGLHFATTTMLTTFLRWL-GYIQTSHLP---FSELVRFVVF-ANFSIVGMNVSLMWNSVGFY 105 (204)
Q Consensus 31 ~~NK~il~~~~f~~P~~Lt~~q~~~~~~~~~i~~~~-~~~~~~~~~---~~~~~plsl~-~~~~i~~~n~sl~~~svs~~ 105 (204)
..+|...++ ++ |...+.+++..+.+ ..+.... +..+.++.+ +......+++ ......+-+.++++.+++..
T Consensus 8 ~~~k~~~~~--~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 83 (126)
T PF00892_consen 8 VFSKKLLKK--IS-PLSITFWRFLIAGI-LLILLLILGRKPFKNLSPRQWLWLLFLGLLGTALAYLLYFYALKYISASIV 83 (126)
T ss_pred HHHHHHhcc--CC-HHHHHHHHHHHHHH-HHHHHHhhccccccCCChhhhhhhhHhhccceehHHHHHHHHHHhcchhHH
Confidence 578888876 66 89999999999986 4443222 211122222 4456666666 57889999999999999999
Q ss_pred HHHhhhhhHHHHHHHHHhcceecCcchhhhhhhhhhhheee
Q 043019 106 QIAKLSMIPVSCFLEVVLDKVRYSRDTKLSILLVLFGVGVC 146 (204)
Q Consensus 106 qi~K~~~pv~~~l~~~~~~~~~~s~~~~~sl~~i~~Gv~~~ 146 (204)
+++..+.|+++++++++++||+++++++.++.+++.|+.+.
T Consensus 84 ~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~ 124 (126)
T PF00892_consen 84 SILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLI 124 (126)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998764
No 24
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=98.64 E-value=1.2e-07 Score=83.04 Aligned_cols=125 Identities=16% Similarity=0.203 Sum_probs=100.9
Q ss_pred hHHHHHHHHH----HHHHHhhhhhccchHHHHHHHhhhhhHHHHHHHHHhcceecCcchhhhhhhhhhhheeeeecccc-
Q 043019 78 ELVRFVVFAN----FSIVGMNVSLMWNSVGFYQIAKLSMIPVSCFLEVVLDKVRYSRDTKLSILLVLFGVGVCTVTDVS- 152 (204)
Q Consensus 78 ~~~plsl~~~----~~i~~~n~sl~~~svs~~qi~K~~~pv~~~l~~~~~~~~~~s~~~~~sl~~i~~Gv~~~~~~d~~- 152 (204)
+..-+++.++ ..-.+.|.||++.+|+-.+++-+++-.||..++.++.+||+++.+.+++.+-++|+.+.+.+|.+
T Consensus 157 ~~ak~sl~fc~lWF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~~ 236 (416)
T KOG2765|consen 157 QTAKLSLFFCPLWFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQ 236 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEeccccc
Confidence 5666666555 45567899999999999999999999999999999999999999999999999999999999652
Q ss_pred -------ccHHHHHHHHHHHHHHHHHHHHHHhhhccccccccc-----h--hhhhhhhhceeee
Q 043019 153 -------VNAKGFIAAFVAVWSTAMQQYHVILNISVSITHLFL-----C--LNHHIVCIPVVVV 202 (204)
Q Consensus 153 -------~~~~G~~~~l~s~~~~a~~~i~~~~~~~~~~~~~~~-----~--~~~~~~slp~~~~ 202 (204)
-...|-++++++.+.+|.|.++.||+...+...++- . ..|.++--|.+++
T Consensus 237 ~~~~~a~~~llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~i 300 (416)
T KOG2765|consen 237 NSDLPASRPLLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLII 300 (416)
T ss_pred cccCCccchhHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHH
Confidence 237899999999999999999999944333212221 1 2466666665544
No 25
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=98.61 E-value=9.5e-07 Score=75.14 Aligned_cols=97 Identities=16% Similarity=0.087 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHHhhhhhccchHHHHHHHhhhhhHHHHHHHHHhcceecCcchhhhhhhhhhhheeeeecc-ccccHHHHH
Q 043019 81 RFVVFANFSIVGMNVSLMWNSVGFYQIAKLSMIPVSCFLEVVLDKVRYSRDTKLSILLVLFGVGVCTVTD-VSVNAKGFI 159 (204)
Q Consensus 81 plsl~~~~~i~~~n~sl~~~svs~~qi~K~~~pv~~~l~~~~~~~~~~s~~~~~sl~~i~~Gv~~~~~~d-~~~~~~G~~ 159 (204)
.-++.......+-+.++++.|++....+-.+.|+++++++++++|||++++++.++.+...|+.+....| .+.+..|..
T Consensus 68 ~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~~~~~~~~~~g~~ 147 (281)
T TIGR03340 68 ISAVANMVYFLGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGLSRFAQHRRKAYA 147 (281)
T ss_pred HHHHHHHHHHHHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcccccccchhHHH
Confidence 3444566778888999999999999999999999999999999999999999999999999998765443 235677888
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 043019 160 AAFVAVWSTAMQQYHVIL 177 (204)
Q Consensus 160 ~~l~s~~~~a~~~i~~~~ 177 (204)
+++.+.++.+.|.+..|+
T Consensus 148 ~~l~aal~~a~~~i~~k~ 165 (281)
T TIGR03340 148 WALAAALGTAIYSLSDKA 165 (281)
T ss_pred HHHHHHHHHHHhhhhccc
Confidence 999999999999998876
No 26
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=98.60 E-value=7.2e-06 Score=68.47 Aligned_cols=134 Identities=19% Similarity=0.102 Sum_probs=102.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhCCc--cCCCCCc-hhHHHHHHHHHHHHHHhhhhhccchHHHHHHHhhhhhHHHHHHHH
Q 043019 45 ATTLTGLHFATTTMLTTFLRWLGYI--QTSHLPF-SELVRFVVFANFSIVGMNVSLMWNSVGFYQIAKLSMIPVSCFLEV 121 (204)
Q Consensus 45 P~~Lt~~q~~~~~~~~~i~~~~~~~--~~~~~~~-~~~~plsl~~~~~i~~~n~sl~~~svs~~qi~K~~~pv~~~l~~~ 121 (204)
+......+.....+........+.. ++.+.++ +..+.-.+.......+-..++++.+.+..+++.++.|+++.+++.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~ 115 (292)
T COG0697 36 FLFAAALRFLIAALLLLPLLLLEPRGLRPALRPWLLLLLLALLGLALPFLLLFLALKYTSASVASLIIGLLPLFTALLAV 115 (292)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHH
Confidence 3444455877777663333333321 1111122 234444556777778888899999999999999999999999997
Q ss_pred -HhcceecCcchhhhhhhhhhhheeeeecccccc---HHHHHHHHHHHHHHHHHHHHHHhh
Q 043019 122 -VLDKVRYSRDTKLSILLVLFGVGVCTVTDVSVN---AKGFIAAFVAVWSTAMQQYHVILN 178 (204)
Q Consensus 122 -~~~~~~~s~~~~~sl~~i~~Gv~~~~~~d~~~~---~~G~~~~l~s~~~~a~~~i~~~~~ 178 (204)
++++||.+++++.+......|+.+....+...+ ..|..+++.+.+..|++.+..++.
T Consensus 116 ~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~~~~~~~~g~~~~l~a~~~~a~~~~~~~~~ 176 (292)
T COG0697 116 LLLLGERLSLLQILGILLALAGVLLILLGGGGGGILSLLGLLLALAAALLWALYTALVKRL 176 (292)
T ss_pred HHHccCCCcHHHHHHHHHHHHhHHheecCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 777999999999999999999999988776543 589999999999999999999973
No 27
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=98.48 E-value=7.4e-07 Score=65.92 Aligned_cols=76 Identities=18% Similarity=0.149 Sum_probs=65.9
Q ss_pred chhHHHHHHHHH-HHHHHhhhhhccchHHHHHHHhhhhhHHHHHHHHHhcceecCcchhhhhhhhhhhheeeeecccc
Q 043019 76 FSELVRFVVFAN-FSIVGMNVSLMWNSVGFYQIAKLSMIPVSCFLEVVLDKVRYSRDTKLSILLVLFGVGVCTVTDVS 152 (204)
Q Consensus 76 ~~~~~plsl~~~-~~i~~~n~sl~~~svs~~qi~K~~~pv~~~l~~~~~~~~~~s~~~~~sl~~i~~Gv~~~~~~d~~ 152 (204)
+..+...+++.. ....+-..++++.+ +....+.++.|+++++++.+++|||.+++++.++.++.+|+.+..++|.+
T Consensus 34 ~~~~~~~g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~~~~~er~~~~~~~a~~l~~~Gv~li~~~~~~ 110 (113)
T PF13536_consen 34 WLWLILAGLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSWLFFKERLSPRRWLAILLILIGVILIAWSDLT 110 (113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhhhcc
Confidence 344455566554 77888899999999 68889999999999999999999999999999999999999998888764
No 28
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=98.38 E-value=1e-05 Score=68.76 Aligned_cols=164 Identities=17% Similarity=0.122 Sum_probs=120.5
Q ss_pred HHHHHHHHHHHHHhh-----hcCCCchhhHHHHHHHHHHHHHHH---HHHh----CCcc-------CCCCCc--hhHHHH
Q 043019 24 VTSVGIIMVNKALMA-----TYGFSFATTLTGLHFATTTMLTTF---LRWL----GYIQ-------TSHLPF--SELVRF 82 (204)
Q Consensus 24 ~~S~~~~~~NK~il~-----~~~f~~P~~Lt~~q~~~~~~~~~i---~~~~----~~~~-------~~~~~~--~~~~pl 82 (204)
.+...-++.-||.=+ .-||+.|..-+..-|+=-..-+.+ .++. |... .++-|+ .-.+|-
T Consensus 13 vsGs~Ntl~aKwadsi~~eg~pgfqhpvlqal~mFlGEflCl~vf~lir~~sn~~g~~s~~~~ilsq~~~pf~p~lfl~P 92 (372)
T KOG3912|consen 13 VSGSFNTLVAKWADSIQAEGSPGFQHPVLQALLMFLGEFLCLAVFKLIRLRSNGQGVSSDLDSILSQDSSPFNPVLFLPP 92 (372)
T ss_pred hhccHHHHHHHHHHhhhhhCCCccccHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccccccccCCCCcceecCh
Confidence 344444566788755 255888877665544322111111 2221 1111 011133 446778
Q ss_pred HHHHHHHHHHhhhhhccchHHHHHHHhhhhhHHHHHHHHHhcceecCcchhhhhhhhhhhheeeeeccccc---------
Q 043019 83 VVFANFSIVGMNVSLMWNSVGFYQIAKLSMIPVSCFLEVVLDKVRYSRDTKLSILLVLFGVGVCTVTDVSV--------- 153 (204)
Q Consensus 83 sl~~~~~i~~~n~sl~~~svs~~qi~K~~~pv~~~l~~~~~~~~~~s~~~~~sl~~i~~Gv~~~~~~d~~~--------- 153 (204)
+++=.....+.|.++.+.+.+-+|++|-...+||-+++.-+++++...++|+++..++.|+.+....|...
T Consensus 93 al~Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~~d~~~~~~p~~d~s 172 (372)
T KOG3912|consen 93 ALCDIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGSLDVHLVTDPYTDYS 172 (372)
T ss_pred HHHHHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeeeeecccccCCccccc
Confidence 88888888999999999999999999999999999999999999999999999999999999988776432
Q ss_pred -cHHHHHHHHHHHHHHHHHHHHHHhhhccccccccch
Q 043019 154 -NAKGFIAAFVAVWSTAMQQYHVILNISVSITHLFLC 189 (204)
Q Consensus 154 -~~~G~~~~l~s~~~~a~~~i~~~~~~~~~~~~~~~~ 189 (204)
-.+|-.+.+++-+.-|++.+.-+| ..+++++.+.
T Consensus 173 ~iitGdllIiiaqiivaiQ~v~Eek--~l~~~nV~pl 207 (372)
T KOG3912|consen 173 SIITGDLLIIIAQIIVAIQMVCEEK--QLKKSNVAPL 207 (372)
T ss_pred cchhhhHHHHHHHHHHHHHHHHHHh--hhhhccCCHH
Confidence 268999999999999999999998 5566666554
No 29
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=98.12 E-value=0.00011 Score=63.15 Aligned_cols=103 Identities=10% Similarity=0.033 Sum_probs=84.0
Q ss_pred CchhHHHHHHH----HHHHHHHhhhhhccchHHHHHHHhh-hhhHHHHHHHHHhcceecCcch----hhhhhhhhhhhee
Q 043019 75 PFSELVRFVVF----ANFSIVGMNVSLMWNSVGFYQIAKL-SMIPVSCFLEVVLDKVRYSRDT----KLSILLVLFGVGV 145 (204)
Q Consensus 75 ~~~~~~plsl~----~~~~i~~~n~sl~~~svs~~qi~K~-~~pv~~~l~~~~~~~~~~s~~~----~~sl~~i~~Gv~~ 145 (204)
+.++.++.++. .+..-.+-..+.++..++....+=. ..+++..+.+.+++||+.++++ ..++++++.|+.+
T Consensus 54 ~~~~~~~~g~l~G~~w~ig~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l 133 (290)
T TIGR00776 54 WALSIFLVGLLSGAFWALGQINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYL 133 (290)
T ss_pred cccHHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHhe
Confidence 44666666665 4444466667779999999877777 7777899999999999999999 9999999999999
Q ss_pred eeecccc-------cc-HHHHHHHHHHHHHHHHHHHHHHh
Q 043019 146 CTVTDVS-------VN-AKGFIAAFVAVWSTAMQQYHVIL 177 (204)
Q Consensus 146 ~~~~d~~-------~~-~~G~~~~l~s~~~~a~~~i~~~~ 177 (204)
.+..|.+ .| ..|.++++.+.+..+.|.+..|+
T Consensus 134 ~~~~~~~~~~~~~~~~~~~Gi~~~l~sg~~y~~~~~~~~~ 173 (290)
T TIGR00776 134 TSRSKDKSAGIKSEFNFKKGILLLLMSTIGYLVYVVVAKA 173 (290)
T ss_pred EEeccccccccccccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 7764322 34 78999999999999999999987
No 30
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=97.95 E-value=0.0003 Score=61.45 Aligned_cols=160 Identities=15% Similarity=0.095 Sum_probs=109.8
Q ss_pred HHHHHHHHHHHHHhhhcCCCc-hhhHHHHHHHHHHHHHHH--HHHhCC--cc-CCCCC------chhHHH---HHHHHHH
Q 043019 24 VTSVGIIMVNKALMATYGFSF-ATTLTGLHFATTTMLTTF--LRWLGY--IQ-TSHLP------FSELVR---FVVFANF 88 (204)
Q Consensus 24 ~~S~~~~~~NK~il~~~~f~~-P~~Lt~~q~~~~~~~~~i--~~~~~~--~~-~~~~~------~~~~~p---lsl~~~~ 88 (204)
+-+.++.+.-|+--...+.+| |.+..++-=..-.+++.. .+..+. -+ .+.++ +++.+- -++.|+.
T Consensus 25 ~~~~~l~l~l~ys~~~~~~~f~~tt~v~~~Ei~Kl~~c~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lk~~vPa~iYal 104 (345)
T KOG2234|consen 25 AQNTALTLLLRYSRTREKPMFLPTTAVFLTEVIKLVFCLFLLLFEERKYAKKSLKSLSKEILAAPRETLKVSVPALIYAL 104 (345)
T ss_pred HHHhhHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhcCHHHHhChHHHHHHHHHHHHHHH
Confidence 555666667676655555555 655554443333333332 111111 11 11121 223333 3446666
Q ss_pred HHHHhhhhhccchHHHHHHHhhhhhHHHHHHHHHhcceecCcchhhhhhhhhhhheeeeecc-----------ccccHHH
Q 043019 89 SIVGMNVSLMWNSVGFYQIAKLSMIPVSCFLEVVLDKVRYSRDTKLSILLVLFGVGVCTVTD-----------VSVNAKG 157 (204)
Q Consensus 89 ~i~~~n~sl~~~svs~~qi~K~~~pv~~~l~~~~~~~~~~s~~~~~sl~~i~~Gv~~~~~~d-----------~~~~~~G 157 (204)
.--+--.++.+.+-++||+.-...+..|+++.+++++||.++++|.++++...|+.+.-.+. .+-.+.|
T Consensus 105 qNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~~~~~~~~a~~~~~~~n~~~G 184 (345)
T KOG2234|consen 105 QNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQLPSLSPTGAKSESSAQNPFLG 184 (345)
T ss_pred hhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCCCCCccCCCcccchhhh
Confidence 55566678889999999999999999999999999999999999999999999998876221 1224789
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccc
Q 043019 158 FIAAFVAVWSTAMQQYHVILNISVSI 183 (204)
Q Consensus 158 ~~~~l~s~~~~a~~~i~~~~~~~~~~ 183 (204)
+...+.+++.+++-+++.+|.++.++
T Consensus 185 ~~avl~~c~~SgfAgvYfEkiLK~s~ 210 (345)
T KOG2234|consen 185 LVAVLVACFLSGFAGVYFEKILKGSN 210 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999654444
No 31
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=97.94 E-value=0.00028 Score=58.62 Aligned_cols=114 Identities=15% Similarity=0.069 Sum_probs=82.6
Q ss_pred HHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHhCCccCCCCCchh---HHHHHHH-HHHHHHHhhhhhccchHH
Q 043019 28 GIIMVNKALMATYGFSFATTLTGLHFATTTMLTTFLRWLGYIQTSHLPFSE---LVRFVVF-ANFSIVGMNVSLMWNSVG 103 (204)
Q Consensus 28 ~~~~~NK~il~~~~f~~P~~Lt~~q~~~~~~~~~i~~~~~~~~~~~~~~~~---~~plsl~-~~~~i~~~n~sl~~~svs 103 (204)
.-....|...++.+-+ +..+..+++.++.+.+.+....... .+..+.+. .+-++++ ......+-+.++++.+.+
T Consensus 142 ~~~~~~k~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 219 (260)
T TIGR00950 142 LGTVLYKRLVKKEGPE-LLQFTGWVLLLGALLLLPFAWFLGP-NPQALSLQWGALLYLGLIGTALAYFLWNKGLTLVDPS 219 (260)
T ss_pred HHHHHHhHHhhcCCch-HHHHHHHHHHHHHHHHHHHHHhcCC-CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch
Confidence 3345677766543322 4556667888887777665433221 11223333 3335544 346777889999999999
Q ss_pred HHHHHhhhhhHHHHHHHHHhcceecCcchhhhhhhhhhhh
Q 043019 104 FYQIAKLSMIPVSCFLEVVLDKVRYSRDTKLSILLVLFGV 143 (204)
Q Consensus 104 ~~qi~K~~~pv~~~l~~~~~~~~~~s~~~~~sl~~i~~Gv 143 (204)
...++..+.|++.+++++++++|+++..++.+..++..|+
T Consensus 220 ~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~ 259 (260)
T TIGR00950 220 AASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAV 259 (260)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999986
No 32
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=97.78 E-value=4.4e-05 Score=62.05 Aligned_cols=111 Identities=14% Similarity=0.028 Sum_probs=97.6
Q ss_pred chhHHHHHHHHHHHHHHhhhhhccchHHHHHHHhhhhhHHHHHHHHHhcceecCcchhhhhhhhhhhheeeeecccc--c
Q 043019 76 FSELVRFVVFANFSIVGMNVSLMWNSVGFYQIAKLSMIPVSCFLEVVLDKVRYSRDTKLSILLVLFGVGVCTVTDVS--V 153 (204)
Q Consensus 76 ~~~~~plsl~~~~~i~~~n~sl~~~svs~~qi~K~~~pv~~~l~~~~~~~~~~s~~~~~sl~~i~~Gv~~~~~~d~~--~ 153 (204)
+++..|.+++..+.-..--.+++..+.+-.+.+-++.-.|+.+++++.+|+|+...+.++.++.+.|+.+.++-|.+ .
T Consensus 53 ~~~taPF~i~Wt~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~DN~~a~ 132 (290)
T KOG4314|consen 53 FIRTAPFSIFWTGANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYADNEHAD 132 (290)
T ss_pred eeeecceEEEEecCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEeccchhhh
Confidence 36677888888877777778999999999999999999999999999999999999999999999999999988764 5
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhhccccccc
Q 043019 154 NAKGFIAAFVAVWSTAMQQYHVILNISVSITHL 186 (204)
Q Consensus 154 ~~~G~~~~l~s~~~~a~~~i~~~~~~~~~~~~~ 186 (204)
++.|+..++.|...+|+|.+.-|.-....++..
T Consensus 133 e~iGi~~AV~SA~~aAlYKV~FK~~iGnAn~Gd 165 (290)
T KOG4314|consen 133 EIIGIACAVGSAFMAALYKVLFKMFIGNANFGD 165 (290)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhccCcchh
Confidence 799999999999999999999998554444443
No 33
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=97.74 E-value=0.00043 Score=51.24 Aligned_cols=62 Identities=13% Similarity=-0.027 Sum_probs=57.3
Q ss_pred HHHHHHHHhhhhhccchHHHHHHHhhhhhHHHHHHHHHhcceecCcchhhhhhhhhhhheee
Q 043019 85 FANFSIVGMNVSLMWNSVGFYQIAKLSMIPVSCFLEVVLDKVRYSRDTKLSILLVLFGVGVC 146 (204)
Q Consensus 85 ~~~~~i~~~n~sl~~~svs~~qi~K~~~pv~~~l~~~~~~~~~~s~~~~~sl~~i~~Gv~~~ 146 (204)
.+.....+-..+++..|++....+-+..++.+++.+++++|||.+++++.++.++++|+.+.
T Consensus 46 ~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i 107 (111)
T PRK15051 46 CLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVIL 107 (111)
T ss_pred HHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Confidence 45677888889999999999999999999999999999999999999999999999998654
No 34
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=97.54 E-value=4.7e-05 Score=64.39 Aligned_cols=148 Identities=15% Similarity=0.098 Sum_probs=102.7
Q ss_pred HHHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHH---HhCCccCCCCCchhH-HHHHHHHHHHHHHhhhhhc
Q 043019 23 VVTSVGIIMVNKALMATYGFSFATTLTGLHFATTTMLTTFLR---WLGYIQTSHLPFSEL-VRFVVFANFSIVGMNVSLM 98 (204)
Q Consensus 23 ~~~S~~~~~~NK~il~~~~f~~P~~Lt~~q~~~~~~~~~i~~---~~~~~~~~~~~~~~~-~plsl~~~~~i~~~n~sl~ 98 (204)
+.++.+++...|-+..+ |.-+...++++-.+..+.+- +.+.+-++ +-|++ +.=++.-...+.+.-+|++
T Consensus 47 ~ff~~~~vv~t~~~e~~-----p~e~a~~r~l~~mlit~pcliy~~~~v~gp~--g~R~~LiLRg~mG~tgvmlmyya~~ 119 (346)
T KOG4510|consen 47 YFFNSCMVVSTKVLEND-----PMELASFRLLVRMLITYPCLIYYMQPVIGPE--GKRKWLILRGFMGFTGVMLMYYALM 119 (346)
T ss_pred HHHhhHHHhhhhhhccC-----hhHhhhhhhhhehhhhheEEEEEeeeeecCC--CcEEEEEeehhhhhhHHHHHHHHHh
Confidence 46777777777765543 66666666554444433321 11111111 12222 2234455566778889999
Q ss_pred cchHHHHHHHhhhhhHHHHHHHHHhcceecCcchhhhhhhhhhhheeeee-----ccc---------cccHHHHHHHHHH
Q 043019 99 WNSVGFYQIAKLSMIPVSCFLEVVLDKVRYSRDTKLSILLVLFGVGVCTV-----TDV---------SVNAKGFIAAFVA 164 (204)
Q Consensus 99 ~~svs~~qi~K~~~pv~~~l~~~~~~~~~~s~~~~~sl~~i~~Gv~~~~~-----~d~---------~~~~~G~~~~l~s 164 (204)
|.|++=..++-.++|++|.++++.++||++|+...+.-.....||.+..- +|. +.+..|-..++.+
T Consensus 120 ~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPpFlFG~~t~g~~~s~~~~~~~gt~aai~s 199 (346)
T KOG4510|consen 120 YMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRPPFLFGDTTEGEDSSQVEYDIPGTVAAISS 199 (346)
T ss_pred hcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecCCcccCCCccccccccccccCCchHHHHHh
Confidence 99999999999999999999999999999999999999999999998763 221 2467788888888
Q ss_pred HHHHHHHHHHHHh
Q 043019 165 VWSTAMQQYHVIL 177 (204)
Q Consensus 165 ~~~~a~~~i~~~~ 177 (204)
.+..|---|..++
T Consensus 200 ~lf~asvyIilR~ 212 (346)
T KOG4510|consen 200 VLFGASVYIILRY 212 (346)
T ss_pred HhhhhhHHHHHHH
Confidence 8877755555555
No 35
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=97.43 E-value=0.00012 Score=60.12 Aligned_cols=97 Identities=15% Similarity=0.066 Sum_probs=73.6
Q ss_pred chHHHHHHHhhhhhHHHHHHHHHhcceecCcchhhhhhhhhhhheeeeecccc---------------------------
Q 043019 100 NSVGFYQIAKLSMIPVSCFLEVVLDKVRYSRDTKLSILLVLFGVGVCTVTDVS--------------------------- 152 (204)
Q Consensus 100 ~svs~~qi~K~~~pv~~~l~~~~~~~~~~s~~~~~sl~~i~~Gv~~~~~~d~~--------------------------- 152 (204)
+++|.+...|+..++++++.++.+.+||++..++++..++..|+.....+|.+
T Consensus 2 isvPa~~~~~s~~l~~v~l~~~~~~~~~~~~~~i~~~~l~~~g~l~~~ls~~q~~al~~l~~~~~~~~~~~~~~~~~~~g 81 (222)
T TIGR00803 2 LSVPIHIIFKQNNLVLIALGNLLAAGKQVTQLKILSTALMTLGSLVASLGDDQWFSLKLLKLGVAIVQMVQSSAKTLMFG 81 (222)
T ss_pred ccccchHHHHhcchHHHHHhcccccceeeehHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHhHeeeecCCCCccccccc
Confidence 58999999999999999999999999999999999999999998864444332
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhhhccccccccchhhhhhhhhcee
Q 043019 153 VNAKGFIAAFVAVWSTAMQQYHVILNISVSITHLFLCLNHHIVCIPVV 200 (204)
Q Consensus 153 ~~~~G~~~~l~s~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~slp~~ 200 (204)
..+.|....+.+....++-.++.++ ..|++ +..+|.+..++|.+
T Consensus 82 ~~~~g~~~~l~a~~~~~~~~~y~e~--~~k~~--~~~~~~~~~~l~~~ 125 (222)
T TIGR00803 82 NPVVGLSAVLSALLSSGFAGVYFEK--ILKDG--DTMFWSRNLQLPLF 125 (222)
T ss_pred cHHHHHHHHHHHHHHHhhhHHHHHH--cccCC--CCchHHHHHHHHHH
Confidence 2356777777777777777777777 22222 22366666666654
No 36
>COG2510 Predicted membrane protein [Function unknown]
Probab=97.43 E-value=0.0026 Score=48.27 Aligned_cols=124 Identities=10% Similarity=0.032 Sum_probs=90.8
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHH-HhCCcc-CCCCCchhH---HHHHHHHHHHHHHhhhh
Q 043019 22 NVVTSVGIIMVNKALMATYGFSFATTLTGLHFATTTMLTTFLR-WLGYIQ-TSHLPFSEL---VRFVVFANFSIVGMNVS 96 (204)
Q Consensus 22 ~~~~S~~~~~~NK~il~~~~f~~P~~Lt~~q~~~~~~~~~i~~-~~~~~~-~~~~~~~~~---~plsl~~~~~i~~~n~s 96 (204)
+..+.....++-|.-+++ .+ |.+=|..+..+..+++.... ..|..+ +...+.|.+ ..-++....+-.+=-.+
T Consensus 11 sA~fa~L~~iF~KIGl~~--vd-p~~At~IRtiVi~~~l~~v~~~~g~~~~~~~~~~k~~lflilSGla~glswl~Yf~A 87 (140)
T COG2510 11 SALFAGLTPIFAKIGLEG--VD-PDFATTIRTIVILIFLLIVLLVTGNWQAGGEIGPKSWLFLILSGLAGGLSWLLYFRA 87 (140)
T ss_pred HHHHHHHHHHHHHHhccc--cC-ccHHHHHHHHHHHHHHHHHHHhcCceecccccCcceehhhhHHHHHHHHHHHHHHHH
Confidence 334455555678887764 45 88888899888777766633 344433 223444443 33445566666677778
Q ss_pred hccchHHHHHHHhhhhhHHHHHHHHHhcceecCcchhhhhhhhhhhheeeee
Q 043019 97 LMWNSVGFYQIAKLSMIPVSCFLEVVLDKVRYSRDTKLSILLVLFGVGVCTV 148 (204)
Q Consensus 97 l~~~svs~~qi~K~~~pv~~~l~~~~~~~~~~s~~~~~sl~~i~~Gv~~~~~ 148 (204)
++....|-.--+-..+|+++++++++++|||+|.+++..+.++++|+.+.+.
T Consensus 88 Lk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs~ 139 (140)
T COG2510 88 LKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVSL 139 (140)
T ss_pred HhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEec
Confidence 8888888777788899999999999999999999999999999999987653
No 37
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=97.40 E-value=0.0045 Score=52.86 Aligned_cols=108 Identities=16% Similarity=0.068 Sum_probs=80.0
Q ss_pred chhhHHHHHHHHHHHHHHHHHHh-CCccCCCCC---chhHHHHHHH-HHHHHHHhhhhhccchHHHHHHHhhhhhHHHHH
Q 043019 44 FATTLTGLHFATTTMLTTFLRWL-GYIQTSHLP---FSELVRFVVF-ANFSIVGMNVSLMWNSVGFYQIAKLSMIPVSCF 118 (204)
Q Consensus 44 ~P~~Lt~~q~~~~~~~~~i~~~~-~~~~~~~~~---~~~~~plsl~-~~~~i~~~n~sl~~~svs~~qi~K~~~pv~~~l 118 (204)
.|...+.+|+.++...+.+.... +.......+ +..++-+++. ......+-+.++++.+.+...+.-..+|++.++
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~i~~s~~~~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i 255 (292)
T PRK11272 176 VGMMAGAAEMLAAGVVLLIASLLSGERLTALPTLSGFLALGYLAVFGSIIAISAYMYLLRNVRPALATSYAYVNPVVAVL 255 (292)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHH
Confidence 35667889998887776664332 211111112 2334444543 446667888999999999999999999999999
Q ss_pred HHHHhcceecCcchhhhhhhhhhhheeeeeccc
Q 043019 119 LEVVLDKVRYSRDTKLSILLVLFGVGVCTVTDV 151 (204)
Q Consensus 119 ~~~~~~~~~~s~~~~~sl~~i~~Gv~~~~~~d~ 151 (204)
.++++++|+++..++.+..++..|+.+....+.
T Consensus 256 ~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~~~~ 288 (292)
T PRK11272 256 LGTGLGGETLSPIEWLALGVIVFAVVLVTLGKY 288 (292)
T ss_pred HHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999877655443
No 38
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=97.36 E-value=0.0045 Score=47.27 Aligned_cols=122 Identities=16% Similarity=0.033 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHHhhh-----cCCCchhhHHHHHHHHHHHHHHHHHH-hCCccC-------C--CC--C---chhHHHHHH
Q 043019 25 TSVGIIMVNKALMAT-----YGFSFATTLTGLHFATTTMLTTFLRW-LGYIQT-------S--HL--P---FSELVRFVV 84 (204)
Q Consensus 25 ~S~~~~~~NK~il~~-----~~f~~P~~Lt~~q~~~~~~~~~i~~~-~~~~~~-------~--~~--~---~~~~~plsl 84 (204)
++..-..+.|..+++ .+.+ |..+....-..+.+.+.+... .+..+. + +. + +...+..++
T Consensus 11 ~~al~~v~~~~~~~~~~~~~~~~~-~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (153)
T PF03151_consen 11 FSALRNVLIKKLLKKVSSNSKKLN-PLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNFIFLLILSGL 89 (153)
T ss_pred HHHHHHHHHHHHHhcccccccCCC-HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHHHHHHHHHHH
Confidence 333334455666665 4666 777776666666666666432 222110 1 11 1 122334455
Q ss_pred HHHHHHHHhhhhhccchHHHHHHHhhhhhHHHHHHHHHhcceecCcchhhhhhhhhhhheeee
Q 043019 85 FANFSIVGMNVSLMWNSVGFYQIAKLSMIPVSCFLEVVLDKVRYSRDTKLSILLVLFGVGVCT 147 (204)
Q Consensus 85 ~~~~~i~~~n~sl~~~svs~~qi~K~~~pv~~~l~~~~~~~~~~s~~~~~sl~~i~~Gv~~~~ 147 (204)
.....-..+...+++.|.-.++++.....+++.+++.++++|+.+..++.+..+...|+.+.+
T Consensus 90 ~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Ys 152 (153)
T PF03151_consen 90 LAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLYS 152 (153)
T ss_pred HHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHheee
Confidence 555666677788899999999999999999999999999999999999999999999988764
No 39
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=97.29 E-value=0.0041 Score=55.13 Aligned_cols=115 Identities=12% Similarity=0.136 Sum_probs=79.0
Q ss_pred HHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHh-CCccCC----CCCc--hhHHHHHHHHHHHHHHhhhhhccchHHH
Q 043019 32 VNKALMATYGFSFATTLTGLHFATTTMLTTFLRWL-GYIQTS----HLPF--SELVRFVVFANFSIVGMNVSLMWNSVGF 104 (204)
Q Consensus 32 ~NK~il~~~~f~~P~~Lt~~q~~~~~~~~~i~~~~-~~~~~~----~~~~--~~~~plsl~~~~~i~~~n~sl~~~svs~ 104 (204)
..|....+ +|.+...+++|+.+..+...+.... ...+.+ ..+. ..++-.++...+...+-|.+.++.+.+.
T Consensus 207 l~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~y~~i~t~lay~lw~~~v~~~ga~~ 284 (358)
T PLN00411 207 LQAHIMSE--YPAAFTVSFLYTVCVSIVTSMIGLVVEKNNPSVWIIHFDITLITIVTMAIITSVYYVIHSWTVRHKGPLY 284 (358)
T ss_pred HHHHHHHH--cCcHhHHHHHHHHHHHHHHHHHHHHHccCCcccceeccchHHHHHHHHHHHHHHHHHHHHHHHhccCchH
Confidence 34444443 4545577888888776665443222 111111 1111 1122233433445567888999999999
Q ss_pred HHHHhhhhhHHHHHHHHHhcceecCcchhhhhhhhhhhheeeee
Q 043019 105 YQIAKLSMIPVSCFLEVVLDKVRYSRDTKLSILLVLFGVGVCTV 148 (204)
Q Consensus 105 ~qi~K~~~pv~~~l~~~~~~~~~~s~~~~~sl~~i~~Gv~~~~~ 148 (204)
..+.-...|++.+++++++++|++++.++.+.+++++|+.+...
T Consensus 285 as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~l~~~ 328 (358)
T PLN00411 285 LAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVMW 328 (358)
T ss_pred HHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999877653
No 40
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=97.08 E-value=0.0037 Score=46.98 Aligned_cols=73 Identities=11% Similarity=0.067 Sum_probs=62.6
Q ss_pred hhHHHHHHHHHHHHHHhhhhhccchHHHHHHH-hhhhhHHHHHHHHHhcceecCcchhhhhhhhhhhheeeeec
Q 043019 77 SELVRFVVFANFSIVGMNVSLMWNSVGFYQIA-KLSMIPVSCFLEVVLDKVRYSRDTKLSILLVLFGVGVCTVT 149 (204)
Q Consensus 77 ~~~~plsl~~~~~i~~~n~sl~~~svs~~qi~-K~~~pv~~~l~~~~~~~~~~s~~~~~sl~~i~~Gv~~~~~~ 149 (204)
...+..-+++..+..+-..++++.|++....+ .....+.+.+.++++++|+.++.++..+.++++|+...-..
T Consensus 31 ~~~~~~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~ 104 (120)
T PRK10452 31 GGFILMLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSG 104 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcC
Confidence 34455666888888899999999999987776 57899999999999999999999999999999998775443
No 41
>PRK11431 multidrug efflux system protein; Provisional
Probab=97.02 E-value=0.0043 Score=45.55 Aligned_cols=68 Identities=16% Similarity=-0.045 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHHhhhhhccchHHHHHHHh-hhhhHHHHHHHHHhcceecCcchhhhhhhhhhhheee
Q 043019 79 LVRFVVFANFSIVGMNVSLMWNSVGFYQIAK-LSMIPVSCFLEVVLDKVRYSRDTKLSILLVLFGVGVC 146 (204)
Q Consensus 79 ~~plsl~~~~~i~~~n~sl~~~svs~~qi~K-~~~pv~~~l~~~~~~~~~~s~~~~~sl~~i~~Gv~~~ 146 (204)
.+..-+.+..+..+-..+++..|++..-.+= ....+.+.+.+++++||+.++.++.++.+++.|+..-
T Consensus 32 ~~~~i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l 100 (105)
T PRK11431 32 SIITVTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGL 100 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhh
Confidence 3445567778888888899999999865544 4888999999999999999999999999999998754
No 42
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=97.01 E-value=0.0041 Score=46.03 Aligned_cols=66 Identities=15% Similarity=0.058 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHhhhhhccchHHHHHHHhh-hhhHHHHHHHHHhcceecCcchhhhhhhhhhhheeee
Q 043019 82 FVVFANFSIVGMNVSLMWNSVGFYQIAKL-SMIPVSCFLEVVLDKVRYSRDTKLSILLVLFGVGVCT 147 (204)
Q Consensus 82 lsl~~~~~i~~~n~sl~~~svs~~qi~K~-~~pv~~~l~~~~~~~~~~s~~~~~sl~~i~~Gv~~~~ 147 (204)
.-+.+..+..+-..+++..|++.....-+ ...+.+.+.++++++|+.++.++.++.++++|+..--
T Consensus 36 ~~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~ 102 (110)
T PRK09541 36 TIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVIN 102 (110)
T ss_pred HHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence 44566677777788999999999888865 6889999999999999999999999999999987653
No 43
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=97.01 E-value=0.027 Score=47.57 Aligned_cols=137 Identities=15% Similarity=0.020 Sum_probs=98.6
Q ss_pred HHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHhCCccCCCCCchhHHHHHHHHHHHHHHhhhhhccchHHHHHHHhhh
Q 043019 32 VNKALMATYGFSFATTLTGLHFATTTMLTTFLRWLGYIQTSHLPFSELVRFVVFANFSIVGMNVSLMWNSVGFYQIAKLS 111 (204)
Q Consensus 32 ~NK~il~~~~f~~P~~Lt~~q~~~~~~~~~i~~~~~~~~~~~~~~~~~~plsl~~~~~i~~~n~sl~~~svs~~qi~K~~ 111 (204)
+-|.+|-. +. |.-.++.+..++.+++....|-...+..+-+++.+...++....+-.+=-.|++.+|.+....+..+
T Consensus 30 ~Ak~LFP~--vG-~~g~t~lRl~~aaLIll~l~RPwr~r~~~~~~~~~~~yGvsLg~MNl~FY~si~riPlGiAVAiEF~ 106 (292)
T COG5006 30 FAKSLFPL--VG-AAGVTALRLAIAALILLALFRPWRRRLSKPQRLALLAYGVSLGGMNLLFYLSIERIPLGIAVAIEFT 106 (292)
T ss_pred HHHHHccc--cC-hhhHHHHHHHHHHHHHHHHhhHHHhccChhhhHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhc
Confidence 45666654 33 7889999999999888775542222223334666777777777777777788999999999999999
Q ss_pred hhHHHHHHHHHhcceecCcchhhhhhhhhhhheeeee-c--cccccHHHHHHHHHHHHHHHHHHHHHHh
Q 043019 112 MIPVSCFLEVVLDKVRYSRDTKLSILLVLFGVGVCTV-T--DVSVNAKGFIAAFVAVWSTAMQQYHVIL 177 (204)
Q Consensus 112 ~pv~~~l~~~~~~~~~~s~~~~~sl~~i~~Gv~~~~~-~--d~~~~~~G~~~~l~s~~~~a~~~i~~~~ 177 (204)
-|+.+.+++ .||..-..|.+ +.+.|..+-.- + ..+.|+.|..+++.+..+.+.|.+..||
T Consensus 107 GPL~vA~~~----sRr~~d~vwva--LAvlGi~lL~p~~~~~~~lDp~Gv~~Al~AG~~Wa~YIv~G~r 169 (292)
T COG5006 107 GPLAVALLS----SRRLRDFVWVA--LAVLGIWLLLPLGQSVWSLDPVGVALALGAGACWALYIVLGQR 169 (292)
T ss_pred cHHHHHHHh----ccchhhHHHHH--HHHHHHHhheeccCCcCcCCHHHHHHHHHHhHHHHHHHHHcch
Confidence 999888764 34444444444 44555444322 2 2458999999999999999999999988
No 44
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=96.89 E-value=0.01 Score=43.84 Aligned_cols=93 Identities=8% Similarity=-0.041 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHHhCCccCCCCC-chhHHHHHHHHHHHHHHhhhhhccchHHHHHHH-hhhhhHHHHHHHHHhcceecCc
Q 043019 53 FATTTMLTTFLRWLGYIQTSHLP-FSELVRFVVFANFSIVGMNVSLMWNSVGFYQIA-KLSMIPVSCFLEVVLDKVRYSR 130 (204)
Q Consensus 53 ~~~~~~~~~i~~~~~~~~~~~~~-~~~~~plsl~~~~~i~~~n~sl~~~svs~~qi~-K~~~pv~~~l~~~~~~~~~~s~ 130 (204)
++...+...+.........+.++ +.......+.+..+..+-..+++..|++..-.+ -....+.+.+.+++++||+.++
T Consensus 11 ~L~~Ai~~Ev~~t~~Lk~s~gf~~~~~~~~~~~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~ 90 (109)
T PRK10650 11 WLALAIVLEIVANIFLKFSDGFRRKIYGILSLAAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNR 90 (109)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCH
Confidence 34444555554433221122221 222333445666788888899999999986554 4477899999999999999999
Q ss_pred chhhhhhhhhhhhee
Q 043019 131 DTKLSILLVLFGVGV 145 (204)
Q Consensus 131 ~~~~sl~~i~~Gv~~ 145 (204)
.++.++.+++.|+..
T Consensus 91 ~~~~gi~lIi~GVi~ 105 (109)
T PRK10650 91 KGWIGLVLLLAGMVM 105 (109)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999999864
No 45
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=96.81 E-value=0.0051 Score=52.64 Aligned_cols=118 Identities=11% Similarity=0.005 Sum_probs=79.1
Q ss_pred HHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHH-hCCccCC-----C----CCchhHHHHH----H-HHHHHHHHhh
Q 043019 30 IMVNKALMATYGFSFATTLTGLHFATTTMLTTFLRW-LGYIQTS-----H----LPFSELVRFV----V-FANFSIVGMN 94 (204)
Q Consensus 30 ~~~NK~il~~~~f~~P~~Lt~~q~~~~~~~~~i~~~-~~~~~~~-----~----~~~~~~~pls----l-~~~~~i~~~n 94 (204)
....|...++.+.+ |..++.+|+..+.+.+.+... .+..+.. + .......... . .+.....+.+
T Consensus 161 ~v~~k~~~~~~~~~-~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (302)
T TIGR00817 161 NIFSKKAMTIKSLD-KTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYTVSLVAAMGFFHFYQQVAF 239 (302)
T ss_pred HHHHHHhhccCCCC-cccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555533445 889999999888877666432 2211100 0 1111112111 1 1111113445
Q ss_pred hhhccchHHHHHHHhhhhhHHHHHHHHHhcceecCcchhhhhhhhhhhheeeee
Q 043019 95 VSLMWNSVGFYQIAKLSMIPVSCFLEVVLDKVRYSRDTKLSILLVLFGVGVCTV 148 (204)
Q Consensus 95 ~sl~~~svs~~qi~K~~~pv~~~l~~~~~~~~~~s~~~~~sl~~i~~Gv~~~~~ 148 (204)
.++++.+...+.+.=...|++++++++++++|+.+..++.+..++.+|+.+...
T Consensus 240 ~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~~ 293 (302)
T TIGR00817 240 MLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSR 293 (302)
T ss_pred HHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHHH
Confidence 789999999999999999999999999999999999999999999999876543
No 46
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=96.70 E-value=0.0056 Score=46.58 Aligned_cols=71 Identities=10% Similarity=0.037 Sum_probs=60.9
Q ss_pred HHHHHH-HHHHHHHHhhhhhccchHHHHHHHhhhhhHHHHHHHHH--hcceecCcchhhhhhhhhhhheeeeec
Q 043019 79 LVRFVV-FANFSIVGMNVSLMWNSVGFYQIAKLSMIPVSCFLEVV--LDKVRYSRDTKLSILLVLFGVGVCTVT 149 (204)
Q Consensus 79 ~~plsl-~~~~~i~~~n~sl~~~svs~~qi~K~~~pv~~~l~~~~--~~~~~~s~~~~~sl~~i~~Gv~~~~~~ 149 (204)
++.+++ ++.+...+=+.+++..|++....+-+..++.+.+.++. ++||+.|+.++..+.++++|+.+...+
T Consensus 50 ~i~lgl~~~~la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~ 123 (129)
T PRK02971 50 AVLLGLAGYALSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLP 123 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccC
Confidence 344554 67778889999999999999999999998888888885 899999999999999999999886544
No 47
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=96.65 E-value=0.042 Score=46.96 Aligned_cols=68 Identities=4% Similarity=-0.068 Sum_probs=58.9
Q ss_pred HHHHHH-HHHHHHHhhhhhccchHHHHHHHhhhhhHHHHHHHHHhcceecCcchhhhhhhhhhhheeee
Q 043019 80 VRFVVF-ANFSIVGMNVSLMWNSVGFYQIAKLSMIPVSCFLEVVLDKVRYSRDTKLSILLVLFGVGVCT 147 (204)
Q Consensus 80 ~plsl~-~~~~i~~~n~sl~~~svs~~qi~K~~~pv~~~l~~~~~~~~~~s~~~~~sl~~i~~Gv~~~~ 147 (204)
+-++++ ..+...+-|.++++.+.+...+.-..+|++..++++++++|+++..++....++++|++..+
T Consensus 212 l~lgv~~t~~~~~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~ 280 (293)
T PRK10532 212 LAVAILSTALPYSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGST 280 (293)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHH
Confidence 345543 34666688999999999999999999999999999999999999999999999998887664
No 48
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=96.64 E-value=0.012 Score=43.24 Aligned_cols=69 Identities=20% Similarity=0.045 Sum_probs=56.7
Q ss_pred hhHHHHHHHHHHHHHHhhhhhccchHHHH-HHHhhhhhHHHHHHHHHhcceecCcchhhhhhhhhhhhee
Q 043019 77 SELVRFVVFANFSIVGMNVSLMWNSVGFY-QIAKLSMIPVSCFLEVVLDKVRYSRDTKLSILLVLFGVGV 145 (204)
Q Consensus 77 ~~~~plsl~~~~~i~~~n~sl~~~svs~~-qi~K~~~pv~~~l~~~~~~~~~~s~~~~~sl~~i~~Gv~~ 145 (204)
+..+..-+++..+..+--.+++..|++.. -+--..-.+.+.+.++++++|+.+..++.++.++++|+..
T Consensus 31 ~~~il~~v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~ 100 (106)
T COG2076 31 WPSILTIVGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIG 100 (106)
T ss_pred chHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHH
Confidence 33444555677777788889999999874 4556677899999999999999999999999999999865
No 49
>PRK11689 aromatic amino acid exporter; Provisional
Probab=96.50 E-value=0.027 Score=48.19 Aligned_cols=67 Identities=16% Similarity=0.146 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHhhhhhccchHHHHHHHhhhhhHHHHHHHHHhcceecCcchhhhhhhhhhhheeeee
Q 043019 82 FVVFANFSIVGMNVSLMWNSVGFYQIAKLSMIPVSCFLEVVLDKVRYSRDTKLSILLVLFGVGVCTV 148 (204)
Q Consensus 82 lsl~~~~~i~~~n~sl~~~svs~~qi~K~~~pv~~~l~~~~~~~~~~s~~~~~sl~~i~~Gv~~~~~ 148 (204)
.++.......+-|.++++.+.+...+.=...|++.+++++++++|+++..++.+..++..|+.+...
T Consensus 221 ~~~~t~~~~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~ 287 (295)
T PRK11689 221 AAAAMGFGYAAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCWL 287 (295)
T ss_pred HHHHHHHHHHHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHhh
Confidence 3444445667789999999999999999999999999999999999999999999999999876644
No 50
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=96.47 E-value=0.059 Score=47.45 Aligned_cols=125 Identities=10% Similarity=0.011 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHHHHHhhhcC-----CCchhhHHHHHHHHHHHHHHHHHH-hCCcc-----------CCCCCchhHHHHHH
Q 043019 22 NVVTSVGIIMVNKALMATYG-----FSFATTLTGLHFATTTMLTTFLRW-LGYIQ-----------TSHLPFSELVRFVV 84 (204)
Q Consensus 22 ~~~~S~~~~~~NK~il~~~~-----f~~P~~Lt~~q~~~~~~~~~i~~~-~~~~~-----------~~~~~~~~~~plsl 84 (204)
+.++...-....|..+++.+ .+ +..+...++..+.+.+.+... .+..+ .....+...+...+
T Consensus 202 s~~~~a~~~i~~k~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~~~~~~~~~~~~~l~~i~ 280 (350)
T PTZ00343 202 SNLGSSLRSIFAKKTMKNKSEIGENLT-ASNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNYTANMTNYTKGIIIFKIF 280 (350)
T ss_pred HHHHHHHHHHHHHHHhcccccccccCC-HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhcccccchHHHHHHHH
Confidence 33444444455666666432 33 444556666777766655322 11100 01111222333333
Q ss_pred HHHHHHHHhh----hhhccchHHHHHHHhhhhhHHHHHHHHHhcceecCcchhhhhhhhhhhheeee
Q 043019 85 FANFSIVGMN----VSLMWNSVGFYQIAKLSMIPVSCFLEVVLDKVRYSRDTKLSILLVLFGVGVCT 147 (204)
Q Consensus 85 ~~~~~i~~~n----~sl~~~svs~~qi~K~~~pv~~~l~~~~~~~~~~s~~~~~sl~~i~~Gv~~~~ 147 (204)
.......+-| .+++.++...+++.=...|++++++++++++|+.+...+.+..++++|+.+.+
T Consensus 281 ~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lYs 347 (350)
T PTZ00343 281 FSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLYS 347 (350)
T ss_pred HHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHHh
Confidence 4445555666 49999999999999999999999999999999999999999999999987643
No 51
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=96.43 E-value=0.059 Score=46.11 Aligned_cols=64 Identities=5% Similarity=0.062 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHhhhhhccchHHHHHHHhhhhhHHHHHHHHHhcceecCcchhhhhhhhhhhhee
Q 043019 82 FVVFANFSIVGMNVSLMWNSVGFYQIAKLSMIPVSCFLEVVLDKVRYSRDTKLSILLVLFGVGV 145 (204)
Q Consensus 82 lsl~~~~~i~~~n~sl~~~svs~~qi~K~~~pv~~~l~~~~~~~~~~s~~~~~sl~~i~~Gv~~ 145 (204)
.++.......+-|.++++.+.+.....-...|++..+.++++++|+++..++.+..++..|+.+
T Consensus 219 ~g~~t~i~~~~~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v 282 (296)
T PRK15430 219 AGIVTTVPLLCFTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAI 282 (296)
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 3445556778899999999999999999999999999999999999999999998888777644
No 52
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=96.26 E-value=0.11 Score=44.50 Aligned_cols=64 Identities=13% Similarity=-0.096 Sum_probs=55.9
Q ss_pred HHHHHHhhhhhccchHHHHHHHhhhhhHHHHHHHHHhcceecCcchhhhhhhhhhhheeeeecc
Q 043019 87 NFSIVGMNVSLMWNSVGFYQIAKLSMIPVSCFLEVVLDKVRYSRDTKLSILLVLFGVGVCTVTD 150 (204)
Q Consensus 87 ~~~i~~~n~sl~~~svs~~qi~K~~~pv~~~l~~~~~~~~~~s~~~~~sl~~i~~Gv~~~~~~d 150 (204)
.+...+-+.++++.+.+.....-..+|++..++++++++|+++..++....+++.|+.+...+.
T Consensus 226 ~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~~~ 289 (299)
T PRK11453 226 IVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVFGL 289 (299)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhcch
Confidence 3556677788899988899999999999999999999999999999999999999987765443
No 53
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=96.25 E-value=0.029 Score=39.99 Aligned_cols=56 Identities=16% Similarity=-0.040 Sum_probs=34.1
Q ss_pred HHHHHHHHHhhhhhccchHHHHH-HHhhhhhHHHHHHHHHhcceecCcchhhhhhhh
Q 043019 84 VFANFSIVGMNVSLMWNSVGFYQ-IAKLSMIPVSCFLEVVLDKVRYSRDTKLSILLV 139 (204)
Q Consensus 84 l~~~~~i~~~n~sl~~~svs~~q-i~K~~~pv~~~l~~~~~~~~~~s~~~~~sl~~i 139 (204)
..+..+..+-..++++.|++..- +......+.+.+.+.+++||+.|+.++.++.++
T Consensus 37 ~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI 93 (93)
T PF00893_consen 37 VGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI 93 (93)
T ss_dssp HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence 37778888889999999999875 456799999999999999999999999887664
No 54
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=96.21 E-value=0.0098 Score=50.46 Aligned_cols=62 Identities=10% Similarity=0.062 Sum_probs=55.8
Q ss_pred HHHHHHHHHhhhhhccchHHHHHHHhhhhhHHHHHHHHHhcceecCcchhhhhhhhhhhhee
Q 043019 84 VFANFSIVGMNVSLMWNSVGFYQIAKLSMIPVSCFLEVVLDKVRYSRDTKLSILLVLFGVGV 145 (204)
Q Consensus 84 l~~~~~i~~~n~sl~~~svs~~qi~K~~~pv~~~l~~~~~~~~~~s~~~~~sl~~i~~Gv~~ 145 (204)
+.......+-+.++++.+.+........+|++..+++++++||+++..++.+..++..|+.+
T Consensus 219 ~~s~l~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l 280 (281)
T TIGR03340 219 LMIGGAYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVV 280 (281)
T ss_pred HHHHHHHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHh
Confidence 34446677888999999999999999999999999999999999999999999999999864
No 55
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=96.05 E-value=0.0022 Score=54.23 Aligned_cols=126 Identities=13% Similarity=0.123 Sum_probs=89.0
Q ss_pred HHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHhCCccCCCCCchhHHHHHHHHHHHHHHhhhhhccchHH
Q 043019 24 VTSVGIIMVNKALMATYGFSFATTLTGLHFATTTMLTTFLRWLGYIQTSHLPFSELVRFVVFANFSIVGMNVSLMWNSVG 103 (204)
Q Consensus 24 ~~S~~~~~~NK~il~~~~f~~P~~Lt~~q~~~~~~~~~i~~~~~~~~~~~~~~~~~~plsl~~~~~i~~~n~sl~~~svs 103 (204)
.++.+..+.|.++-+. +.+-|..-++.....-+++-...-.++. +.-+.-|++.+.++++-+-.-.+--.+++|.+..
T Consensus 28 L~~t~~a~tss~la~k-~iN~Pt~QtFl~Y~LLalVY~~~~~fR~-~~~~~~~~hYilla~~DVEaNy~vV~AyQyTsmt 105 (336)
T KOG2766|consen 28 LLITSTAFTSSELARK-GINAPTSQTFLNYVLLALVYGPIMLFRR-KYIKAKWRHYILLAFVDVEANYFVVKAYQYTSMT 105 (336)
T ss_pred HHHHcchhhhHHHHhc-cCCCccHHHHHHHHHHHHHHhhHHHhhh-HHHHHHHHHhhheeEEeecccEEEeeehhhcchH
Confidence 4556666778876663 5677887666655543333332222221 1111235666666665443333344789999999
Q ss_pred HHHHHhhhhhHHHHHHHHHhcceecCcchhhhhhhhhhhheeeeeccc
Q 043019 104 FYQIAKLSMIPVSCFLEVVLDKVRYSRDTKLSILLVLFGVGVCTVTDV 151 (204)
Q Consensus 104 ~~qi~K~~~pv~~~l~~~~~~~~~~s~~~~~sl~~i~~Gv~~~~~~d~ 151 (204)
-.+.+-+-.+|.+++++++++|.|+++.+..+++....|+.+..+.|.
T Consensus 106 Si~lLDcwaip~v~~lsw~fLktrYrlmki~gV~iCi~GvvmvV~sDV 153 (336)
T KOG2766|consen 106 SIMLLDCWAIPCVLVLSWFFLKTRYRLMKISGVVICIVGVVMVVFSDV 153 (336)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHhhheeeeEEeEecceEEEEEeee
Confidence 999999999999999999999999999999999999999999887763
No 56
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=95.48 E-value=0.22 Score=42.73 Aligned_cols=127 Identities=16% Similarity=0.061 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHh---CCc-cCCCC------CchhHHHHHHHHHHHH
Q 043019 21 FNVVTSVGIIMVNKALMATYGFSFATTLTGLHFATTTMLTTFLRWL---GYI-QTSHL------PFSELVRFVVFANFSI 90 (204)
Q Consensus 21 ~~~~~S~~~~~~NK~il~~~~f~~P~~Lt~~q~~~~~~~~~i~~~~---~~~-~~~~~------~~~~~~plsl~~~~~i 90 (204)
.+..+......+.|.++++++-+ |.-+.....+.+.+...+.... +.. +..+. .+..++..++......
T Consensus 161 ~sl~~~a~~~~~qe~~~~~~~~~-~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~~~p~~~~~l~~~s~~~~~g~ 239 (303)
T PF08449_consen 161 LSLLLDAFTGVYQEKLFKKYGKS-PWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFISAHPSVLLYLLLFSLTGALGQ 239 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 45577777778999999988877 7666666666666665543222 111 11111 1344555666666666
Q ss_pred HHhhhhhccchHHHHHHHhhhhhHHHHHHHHHhcceecCcchhhhhhhhhhhheeeee
Q 043019 91 VGMNVSLMWNSVGFYQIAKLSMIPVSCFLEVVLDKVRYSRDTKLSILLVLFGVGVCTV 148 (204)
Q Consensus 91 ~~~n~sl~~~svs~~qi~K~~~pv~~~l~~~~~~~~~~s~~~~~sl~~i~~Gv~~~~~ 148 (204)
.+-+...+..+--...+...+--+++++++.++++++.++..+.++.++..|..+..+
T Consensus 240 ~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~~~ 297 (303)
T PF08449_consen 240 FFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLYSY 297 (303)
T ss_pred HHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHHHH
Confidence 6666667777777777888888999999999999999999999999999999876543
No 57
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=95.46 E-value=0.25 Score=40.85 Aligned_cols=74 Identities=19% Similarity=0.182 Sum_probs=62.0
Q ss_pred chhHHHHHHHHH-HHHHHhhhhhccchHHHHHHHhhhhhHHHHHHHHHhcceecCcchhhhhhhhhhhheeeeec
Q 043019 76 FSELVRFVVFAN-FSIVGMNVSLMWNSVGFYQIAKLSMIPVSCFLEVVLDKVRYSRDTKLSILLVLFGVGVCTVT 149 (204)
Q Consensus 76 ~~~~~plsl~~~-~~i~~~n~sl~~~svs~~qi~K~~~pv~~~l~~~~~~~~~~s~~~~~sl~~i~~Gv~~~~~~ 149 (204)
+......+++.. ....+-+.+++..+.+.........|++.++.++++++|+++..++.+..+++.|+.+....
T Consensus 214 ~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~~ 288 (292)
T COG0697 214 WLLLLYLGVFSTGLAYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASLR 288 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhcc
Confidence 344555555555 46778889999999999999999999999999999999999999999999999998776543
No 58
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=95.17 E-value=0.27 Score=43.30 Aligned_cols=139 Identities=12% Similarity=0.151 Sum_probs=84.2
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhH---HHHHHHHHHHHHHHHHHhCCccCCCCCc--hhHHH-
Q 043019 8 ADRKAATDVAAWMFNVVTSVGIIMVNKALMATYGFSFATTL---TGLHFATTTMLTTFLRWLGYIQTSHLPF--SELVR- 81 (204)
Q Consensus 8 ~~~~~~~~~~~w~~~~~~S~~~~~~NK~il~~~~f~~P~~L---t~~q~~~~~~~~~i~~~~~~~~~~~~~~--~~~~p- 81 (204)
+++.....+++-...+..+++-++ .|+...++ |-...+ ..+.++++.+.+.+..+- +.++.+| +.+..
T Consensus 163 ~~~~i~GDll~l~~a~lya~~nV~-~E~~v~~~--~~~~~lg~~Glfg~ii~~iq~~ile~~---~i~~~~w~~~~~~~~ 236 (334)
T PF06027_consen 163 GSNPILGDLLALLGAILYAVSNVL-EEKLVKKA--PRVEFLGMLGLFGFIISGIQLAILERS---GIESIHWTSQVIGLL 236 (334)
T ss_pred CCccchhHHHHHHHHHHHHHHHHH-HHHhcccC--CHHHHHHHHHHHHHHHHHHHHHheehh---hhhccCCChhhHHHH
Confidence 445555555555545555555544 55556542 322222 233344444433333222 2222332 22221
Q ss_pred --HHHHHHHHHHHhhhhhccchHHHHHHHhhhhhHHHHHHHHHhcceecCcchhhhhhhhhhhheeeeecccc
Q 043019 82 --FVVFANFSIVGMNVSLMWNSVGFYQIAKLSMIPVSCFLEVVLDKVRYSRDTKLSILLVLFGVGVCTVTDVS 152 (204)
Q Consensus 82 --lsl~~~~~i~~~n~sl~~~svs~~qi~K~~~pv~~~l~~~~~~~~~~s~~~~~sl~~i~~Gv~~~~~~d~~ 152 (204)
.+++....-.+....++..+..+..+.-.++.+..++.+.+++|+++++.-..+.+++++|..+....|.+
T Consensus 237 v~~~~~lf~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~~~~~~ 309 (334)
T PF06027_consen 237 VGYALCLFLFYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYNLAESP 309 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEEccCCc
Confidence 12222222234466777888888888889999999999999999999999999999999999998877653
No 59
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=95.00 E-value=0.74 Score=39.62 Aligned_cols=137 Identities=18% Similarity=0.059 Sum_probs=84.8
Q ss_pred HHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHh-CCcc-CCCC--CchhHHHHHHHHHHHHHHhhhhhccchHHH--
Q 043019 31 MVNKALMATYGFSFATTLTGLHFATTTMLTTFLRWL-GYIQ-TSHL--PFSELVRFVVFANFSIVGMNVSLMWNSVGF-- 104 (204)
Q Consensus 31 ~~NK~il~~~~f~~P~~Lt~~q~~~~~~~~~i~~~~-~~~~-~~~~--~~~~~~plsl~~~~~i~~~n~sl~~~svs~-- 104 (204)
++-|.+-. .| |.-+...+...+..++.+.... |..+ .++. +.|++ ..+..+.-...+|+.+--=.+.=
T Consensus 24 ~y~kll~~---~~-~~eIlahRviwS~~~~l~ll~~~r~~~~~~~~~~~p~~~--~~~~l~a~li~~nW~lfiWAvn~g~ 97 (293)
T COG2962 24 LYFKLLEP---LP-ATEILAHRVIWSFPFMLALLFLLRQWRELKQLLKQPKTL--LMLALTALLIGLNWWLFIWAVNNGH 97 (293)
T ss_pred HHHHHHcc---CC-HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCcHHH--HHHHHHHHHHHHHHHHhheecCCCc
Confidence 45565543 35 6677777777777776663322 2111 1111 12222 22333333455565552212211
Q ss_pred ---HHHHhhhhhHHHHHHHHHhcceecCcchhhhhhhhhhhheeeeeccccccHHHHHHHHHHHHHHHHHHHHHHh
Q 043019 105 ---YQIAKLSMIPVSCFLEVVLDKVRYSRDTKLSILLVLFGVGVCTVTDVSVNAKGFIAAFVAVWSTAMQQYHVIL 177 (204)
Q Consensus 105 ---~qi~K~~~pv~~~l~~~~~~~~~~s~~~~~sl~~i~~Gv~~~~~~d~~~~~~G~~~~l~s~~~~a~~~i~~~~ 177 (204)
...--...|.+.++++.+++|||.|+.++.++.+-.+||..-...-.++++....++ ...++|-..-|+
T Consensus 98 ~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~~g~lpwval~la----~sf~~Ygl~RK~ 169 (293)
T COG2962 98 VLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWLLGSLPWVALALA----LSFGLYGLLRKK 169 (293)
T ss_pred hhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHH----HHHHHHHHHHHh
Confidence 222234579999999999999999999999999999999998888888888666544 345666666554
No 60
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=94.96 E-value=0.062 Score=46.53 Aligned_cols=71 Identities=10% Similarity=0.059 Sum_probs=61.8
Q ss_pred hhHHHHHH-HHHHHHHHhhhhhccchHHHHHHHhhhhhHHHHHHHHHhcceecCcchhhhhhhhhhhheeee
Q 043019 77 SELVRFVV-FANFSIVGMNVSLMWNSVGFYQIAKLSMIPVSCFLEVVLDKVRYSRDTKLSILLVLFGVGVCT 147 (204)
Q Consensus 77 ~~~~plsl-~~~~~i~~~n~sl~~~svs~~qi~K~~~pv~~~l~~~~~~~~~~s~~~~~sl~~i~~Gv~~~~ 147 (204)
++.+..|+ .++.+-.++-.|+.+.|.+..|-+-+...++.++++..++|||.+++.+.+..+++.|..+..
T Consensus 50 ~~~W~~G~~~~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv 121 (300)
T PF05653_consen 50 RPLWWIGLLLMVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIV 121 (300)
T ss_pred hHHHHHHHHHHhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeE
Confidence 34555554 556677788899999999999999999999999999999999999999999999999987644
No 61
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=94.91 E-value=0.3 Score=41.87 Aligned_cols=67 Identities=7% Similarity=-0.046 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHhhhhhc-cchHHHHHHHhhhhhHHHHHHHHHhcceecCcchh----hhhhhhhhhheeee
Q 043019 81 RFVVFANFSIVGMNVSLM-WNSVGFYQIAKLSMIPVSCFLEVVLDKVRYSRDTK----LSILLVLFGVGVCT 147 (204)
Q Consensus 81 plsl~~~~~i~~~n~sl~-~~svs~~qi~K~~~pv~~~l~~~~~~~~~~s~~~~----~sl~~i~~Gv~~~~ 147 (204)
..+++......+-..+.+ +++.+...++=...|+...+.+++++||+.+++++ ...+++++|+.+..
T Consensus 216 ~~Gi~~~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~ 287 (290)
T TIGR00776 216 LPGLMWGIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILG 287 (290)
T ss_pred HHHHHHHHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHh
Confidence 355555554445556778 99999999999999999999999999999999999 88888888887653
No 62
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=94.56 E-value=0.082 Score=39.29 Aligned_cols=70 Identities=19% Similarity=0.171 Sum_probs=57.7
Q ss_pred chhHHHHHHHHHHHHHHhhhhhccchHHHHHHH-hhhhhHHHHHHHHHhcceecCcchhhhhhhhhhhheee
Q 043019 76 FSELVRFVVFANFSIVGMNVSLMWNSVGFYQIA-KLSMIPVSCFLEVVLDKVRYSRDTKLSILLVLFGVGVC 146 (204)
Q Consensus 76 ~~~~~plsl~~~~~i~~~n~sl~~~svs~~qi~-K~~~pv~~~l~~~~~~~~~~s~~~~~sl~~i~~Gv~~~ 146 (204)
++-.+|..+-.++++.+ ...+...++|....+ -+++-++|++.++++++|..+++++..+.+++.|+.+.
T Consensus 42 ~~y~ipf~lNq~GSv~f-~~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~Lc 112 (113)
T PF10639_consen 42 PKYIIPFLLNQSGSVLF-FLLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVALC 112 (113)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeeee
Confidence 46677888777766554 456777788877766 48899999999999999999999999999999999875
No 63
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=91.88 E-value=0.49 Score=40.42 Aligned_cols=97 Identities=14% Similarity=0.086 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHHhhhhhccchHHHHHHH-hhhhhHHHHHHHHHhcceecCcchh----hhhhhhhhhheeeeecccccc-
Q 043019 81 RFVVFANFSIVGMNVSLMWNSVGFYQIA-KLSMIPVSCFLEVVLDKVRYSRDTK----LSILLVLFGVGVCTVTDVSVN- 154 (204)
Q Consensus 81 plsl~~~~~i~~~n~sl~~~svs~~qi~-K~~~pv~~~l~~~~~~~~~~s~~~~----~sl~~i~~Gv~~~~~~d~~~~- 154 (204)
.-+++.+..-...-.|+++..||-.--+ -....+.+.+.++++++|..+...+ .+++++++|+.+.++.|.+-+
T Consensus 50 lsG~~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts~~~~~~~~ 129 (269)
T PF06800_consen 50 LSGAFWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILTSYQDKKSDK 129 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhccccccccc
Confidence 3456777777777777777655533222 2455677999999999998766654 489999999999998875432
Q ss_pred -------HHHHHHHHHHHHHHHHHHHHHHh
Q 043019 155 -------AKGFIAAFVAVWSTAMQQYHVIL 177 (204)
Q Consensus 155 -------~~G~~~~l~s~~~~a~~~i~~~~ 177 (204)
.-|+...+.+.+.+..|.+..|-
T Consensus 130 ~~~~~~~~kgi~~Ll~stigy~~Y~~~~~~ 159 (269)
T PF06800_consen 130 SSSKSNMKKGILALLISTIGYWIYSVIPKA 159 (269)
T ss_pred cccccchhhHHHHHHHHHHHHHHHHHHHHh
Confidence 45999999999999999998654
No 64
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=91.85 E-value=0.25 Score=41.82 Aligned_cols=71 Identities=8% Similarity=-0.039 Sum_probs=57.9
Q ss_pred hhHHHHHHHHH-----HHHHHhhhhhccchHHHHHHHhhhhhHHHHHHHHHhcceecCcchhhhhhhhhhhheeee
Q 043019 77 SELVRFVVFAN-----FSIVGMNVSLMWNSVGFYQIAKLSMIPVSCFLEVVLDKVRYSRDTKLSILLVLFGVGVCT 147 (204)
Q Consensus 77 ~~~~plsl~~~-----~~i~~~n~sl~~~svs~~qi~K~~~pv~~~l~~~~~~~~~~s~~~~~sl~~i~~Gv~~~~ 147 (204)
..++|.++.-. +-..+...+++..|-+.+.++-+..|.+-.+.+.++++|+.|..+|+++..++.+.+=.+
T Consensus 206 p~ll~laLgvavlSSalPYsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsaG~~ 281 (292)
T COG5006 206 PSLLPLALGVAVLSSALPYSLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASAGST 281 (292)
T ss_pred hHHHHHHHHHHHHhcccchHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccc
Confidence 44556555332 223467789999999999999999999999999999999999999999999988776443
No 65
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=89.75 E-value=7.1 Score=31.64 Aligned_cols=65 Identities=12% Similarity=0.004 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHhhhhhccchHHHHHHHhhhhhHHHHHHHHHhcceecCcchhhhhhhhhhhhee
Q 043019 81 RFVVFANFSIVGMNVSLMWNSVGFYQIAKLSMIPVSCFLEVVLDKVRYSRDTKLSILLVLFGVGV 145 (204)
Q Consensus 81 plsl~~~~~i~~~n~sl~~~svs~~qi~K~~~pv~~~l~~~~~~~~~~s~~~~~sl~~i~~Gv~~ 145 (204)
-+.+..++.-.+-+..+++.+-.+..+.-...++++.++++++++++++...+.+..++..|+.+
T Consensus 157 ~~~~~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~l 221 (222)
T TIGR00803 157 IVGLLNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFL 221 (222)
T ss_pred HHHHHHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEe
Confidence 34455555656778889999999999999999999999999999999999999999999988764
No 66
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=84.83 E-value=24 Score=30.20 Aligned_cols=68 Identities=10% Similarity=0.025 Sum_probs=51.2
Q ss_pred hhHHHHHHHHHHHHHHhhhhhccchHHHHHHHhhhhhHHHHHHHHHhcceecCcchh----hhhhhhhhhhe
Q 043019 77 SELVRFVVFANFSIVGMNVSLMWNSVGFYQIAKLSMIPVSCFLEVVLDKVRYSRDTK----LSILLVLFGVG 144 (204)
Q Consensus 77 ~~~~plsl~~~~~i~~~n~sl~~~svs~~qi~K~~~pv~~~l~~~~~~~~~~s~~~~----~sl~~i~~Gv~ 144 (204)
++-+.-++.+...-.+.-.|-+.+-++..-.+--+.++...+.+.+++||+-++++. ..++++++|..
T Consensus 196 ~~nil~G~~w~ignl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~~~~~~G~~Liv~G~i 267 (269)
T PF06800_consen 196 WKNILTGLIWGIGNLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKEMIYTLIGLILIVIGAI 267 (269)
T ss_pred HHhhHHHHHHHHHHHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchhhHHHHHHHHHHHHHhhh
Confidence 344556777777767777788888888888888888999999999999998777654 45555555544
No 67
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=84.57 E-value=21 Score=30.88 Aligned_cols=70 Identities=7% Similarity=0.113 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHHHhhhhhccchHHHHHHHhhhhhHHHHHHHHHhcceecCcchhhhhhhhhhhheeeee
Q 043019 79 LVRFVVFANFSIVGMNVSLMWNSVGFYQIAKLSMIPVSCFLEVVLDKVRYSRDTKLSILLVLFGVGVCTV 148 (204)
Q Consensus 79 ~~plsl~~~~~i~~~n~sl~~~svs~~qi~K~~~pv~~~l~~~~~~~~~~s~~~~~sl~~i~~Gv~~~~~ 148 (204)
+...|...+.-..+-..+-+..|.++...+....|....+.+.++++|.++..++.+-.++-.|.++.+.
T Consensus 214 Lv~aG~vTavpL~lf~~aa~~lpls~~G~lqYi~Ptl~fllav~i~~E~~~~~~~~~F~~IW~aL~l~~~ 283 (293)
T COG2962 214 LVLAGLVTAVPLLLFAAAAKRLPLSTLGFLQYIEPTLMFLLAVLIFGEPFDSDQLVTFAFIWLALALFSI 283 (293)
T ss_pred HHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 4445677777778888899999999999999999999999999999999999999888888777766543
No 68
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.65 E-value=2.3 Score=37.25 Aligned_cols=71 Identities=10% Similarity=0.017 Sum_probs=61.1
Q ss_pred hHHHHHH-HHHHHHHHhhhhhccchHHHHHHHhhhhhHHHHHHHHHhcceecCcchhhhhhhhhhhheeeee
Q 043019 78 ELVRFVV-FANFSIVGMNVSLMWNSVGFYQIAKLSMIPVSCFLEVVLDKVRYSRDTKLSILLVLFGVGVCTV 148 (204)
Q Consensus 78 ~~~plsl-~~~~~i~~~n~sl~~~svs~~qi~K~~~pv~~~l~~~~~~~~~~s~~~~~sl~~i~~Gv~~~~~ 148 (204)
+++..|+ .+..+=..+-.|+.+.|.+..+-+-+.+.+..++++..+++||.++.-.+++.+.++|-.+-..
T Consensus 65 ~~Ww~G~ltm~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~ 136 (335)
T KOG2922|consen 65 PLWWAGMLTMIVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVI 136 (335)
T ss_pred HHHHHHHHHHHHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEE
Confidence 3445554 5666677888999999999999999999999999999999999999999999999999766554
No 69
>PRK13499 rhamnose-proton symporter; Provisional
Probab=69.85 E-value=13 Score=32.91 Aligned_cols=96 Identities=17% Similarity=0.179 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHhhhhhccchHHHHH-HHhhhhhHHHHHHHHHhcceec---C----cchhhhhhhhhhhheeeee----c
Q 043019 82 FVVFANFSIVGMNVSLMWNSVGFYQ-IAKLSMIPVSCFLEVVLDKVRY---S----RDTKLSILLVLFGVGVCTV----T 149 (204)
Q Consensus 82 lsl~~~~~i~~~n~sl~~~svs~~q-i~K~~~pv~~~l~~~~~~~~~~---s----~~~~~sl~~i~~Gv~~~~~----~ 149 (204)
-+++....-...-.+.++.-+|... +.-....+...+...++++|-. + .....+++++++|+++.+. .
T Consensus 79 ~G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~Ag~~k 158 (345)
T PRK13499 79 FGALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGRAGQLK 158 (345)
T ss_pred HHHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 4456666666666777888777655 3344566777788888888643 1 2357889999999999988 5
Q ss_pred ccc--------c-cHHHHHHHHHHHHHHHHHHHHHHh
Q 043019 150 DVS--------V-NAKGFIAAFVAVWSTAMQQYHVIL 177 (204)
Q Consensus 150 d~~--------~-~~~G~~~~l~s~~~~a~~~i~~~~ 177 (204)
|.+ + ..-|..+++++.+.++.|......
T Consensus 159 ~~~~~~~~~~~~~~~KGi~ialisgi~~~~f~~~~~~ 195 (345)
T PRK13499 159 ERKMGIKKAEEFNLKKGLILAVMSGIFSACFSFAMDA 195 (345)
T ss_pred ccccccccccccchHhHHHHHHHHHHHHHHHHHHHhh
Confidence 431 3 367999999999999999965554
No 70
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=66.84 E-value=54 Score=24.89 Aligned_cols=112 Identities=14% Similarity=0.134 Sum_probs=74.1
Q ss_pred HHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHhCCc-c---CCCCCchhHHHHHHHHHHHHHHhhhhhccchHHHHH
Q 043019 31 MVNKALMATYGFSFATTLTGLHFATTTMLTTFLRWLGYI-Q---TSHLPFSELVRFVVFANFSIVGMNVSLMWNSVGFYQ 106 (204)
Q Consensus 31 ~~NK~il~~~~f~~P~~Lt~~q~~~~~~~~~i~~~~~~~-~---~~~~~~~~~~plsl~~~~~i~~~n~sl~~~svs~~q 106 (204)
-.|-.+-+..| -|+.=+.+-+....+.+.+....... + .++.||+.++ =+++-+..+.+++.+.....++..+
T Consensus 18 ~~N~~L~~~~g--s~~~as~i~~~~G~i~~~i~~~~~~~~~~~~~~~~p~w~~l-GG~lG~~~V~~~~~~vp~lG~~~~~ 94 (138)
T PF04657_consen 18 AFNGQLGKALG--SPLVASFISFGVGFILLLIILLITGRPSLASLSSVPWWAYL-GGLLGVFFVLSNIILVPRLGAALTT 94 (138)
T ss_pred HHHHHHHHHhC--ccHHHHHHHHHHHHHHHHHHHHHhcccccchhccCChHHhc-cHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 35666655544 27777788888887777765443222 2 2234455555 5567777788888888888777666
Q ss_pred HHhhh-hhHHHHHHHHH----hcceecCcchhhhhhhhhhhhee
Q 043019 107 IAKLS-MIPVSCFLEVV----LDKVRYSRDTKLSILLVLFGVGV 145 (204)
Q Consensus 107 i~K~~-~pv~~~l~~~~----~~~~~~s~~~~~sl~~i~~Gv~~ 145 (204)
.+--. ..+.-++++.+ .-+++.++++.+.+.++++|+.+
T Consensus 95 ~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L 138 (138)
T PF04657_consen 95 ILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL 138 (138)
T ss_pred HHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence 55443 34455566664 45678899999999999999753
No 71
>PF06946 Phage_holin_5: Phage holin; InterPro: IPR009708 This entry represents the Bacteriophage A118, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=66.04 E-value=15 Score=26.25 Aligned_cols=55 Identities=7% Similarity=-0.030 Sum_probs=33.0
Q ss_pred Ccchhhhhhhhhhhheeeee---ccccccHHHHHH--HHHHHHHHHHHHHHHHhhhccccccc
Q 043019 129 SRDTKLSILLVLFGVGVCTV---TDVSVNAKGFIA--AFVAVWSTAMQQYHVILNISVSITHL 186 (204)
Q Consensus 129 s~~~~~sl~~i~~Gv~~~~~---~d~~~~~~G~~~--~l~s~~~~a~~~i~~~~~~~~~~~~~ 186 (204)
-..+|+-++-+++|+.+... -..+.++...+| ++.+...+++.+.+.|+ +++|..
T Consensus 31 v~~K~iPlIs~viGilLG~~~~~~~~~~~l~~~~~aG~laGlAaTGL~e~~t~r---~~~~~e 90 (93)
T PF06946_consen 31 VPNKWIPLISVVIGILLGAAAYPLTGDGNLALMAWAGGLAGLAATGLFEQFTNR---SKKYGE 90 (93)
T ss_pred CCcchhhHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHhhhhhhhHHHHHHhh---hhhcCc
Confidence 36677777777777776332 233445555433 23444556789999987 455543
No 72
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=61.59 E-value=29 Score=31.26 Aligned_cols=145 Identities=13% Similarity=0.095 Sum_probs=82.4
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHHhhh-cCCCchhhHHHHHHH---HHHHHHHHHHHhCCccCCCCC----chhH
Q 043019 8 ADRKAATDVAAWMFNVVTSVGIIMVNKALMAT-YGFSFATTLTGLHFA---TTTMLTTFLRWLGYIQTSHLP----FSEL 79 (204)
Q Consensus 8 ~~~~~~~~~~~w~~~~~~S~~~~~~NK~il~~-~~f~~P~~Lt~~q~~---~~~~~~~i~~~~~~~~~~~~~----~~~~ 79 (204)
|++.....+.+-.....-++=++++.|.+=++ .+.+-|.++-+...+ .-|..+.+..+++.-+ -++| ...+
T Consensus 242 a~~~llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~~~e~-F~lP~~~q~~~v 320 (416)
T KOG2765|consen 242 ASRPLLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFFGEER-FELPSSTQFSLV 320 (416)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhccCc-ccCCCCceeEee
Confidence 44444444444444455555566677766554 356656655544332 3333334444553221 1111 1112
Q ss_pred HHHHH-HHHHHHHHhhhhhccchHHHHHHHhhhhhHHHHHHHHHhcceecCcchhhhhhhhhhhheeeeeccccc
Q 043019 80 VRFVV-FANFSIVGMNVSLMWNSVGFYQIAKLSMIPVSCFLEVVLDKVRYSRDTKLSILLVLFGVGVCTVTDVSV 153 (204)
Q Consensus 80 ~plsl-~~~~~i~~~n~sl~~~svs~~qi~K~~~pv~~~l~~~~~~~~~~s~~~~~sl~~i~~Gv~~~~~~d~~~ 153 (204)
+..++ ....+=++=-++.-..+--..++.-+.++|..++.+.++.++++|+..+.+.+++.+|..++...+...
T Consensus 321 v~~~ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~iiGsi~Ifv~Fv~vn~~~~~~ 395 (416)
T KOG2765|consen 321 VFNNLIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALYIIGSIPIFVGFVIVNISSENS 395 (416)
T ss_pred eHhhHHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhheecccccc
Confidence 22221 111111122233334455556666788999999999999999999999999999999988887765443
No 73
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=50.36 E-value=98 Score=27.13 Aligned_cols=30 Identities=13% Similarity=0.207 Sum_probs=21.6
Q ss_pred eccccccHHHHHHHHHHHHHHHHHHHHHHh
Q 043019 148 VTDVSVNAKGFIAAFVAVWSTAMQQYHVIL 177 (204)
Q Consensus 148 ~~d~~~~~~G~~~~l~s~~~~a~~~i~~~~ 177 (204)
.+|.++++.|++-.+++.+....|+...++
T Consensus 275 ~~d~~~~~~n~~gll~~~~ggv~Y~~~~~~ 304 (314)
T KOG1444|consen 275 FGDKPFTFLNVIGLLVGFFGGVLYSYATFR 304 (314)
T ss_pred cCCceechhhhHHHHHHhhhhhHHhhhhhh
Confidence 356667777777777777777788887755
No 74
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=46.60 E-value=59 Score=26.68 Aligned_cols=48 Identities=6% Similarity=0.019 Sum_probs=40.4
Q ss_pred chhHHHHHHHHHHHHHHhhhhhccchHHHHHHHhhhhhHHHHHHHHHh
Q 043019 76 FSELVRFVVFANFSIVGMNVSLMWNSVGFYQIAKLSMIPVSCFLEVVL 123 (204)
Q Consensus 76 ~~~~~plsl~~~~~i~~~n~sl~~~svs~~qi~K~~~pv~~~l~~~~~ 123 (204)
|.-.+-.+++......+-+.++++.|.+...+.-...|++.++++.+.
T Consensus 208 ~~~l~~~g~~t~i~~~l~~~a~~~~~a~~~s~~~yl~Pv~~~~~~~~~ 255 (256)
T TIGR00688 208 WLLLVLAGLITGTPLLAFVIAANRLPLNLLGLLQYIGPTIMMLCVSFL 255 (256)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHh
Confidence 344555666666888899999999999999999999999999998764
No 75
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=44.95 E-value=1.9e+02 Score=24.47 Aligned_cols=116 Identities=9% Similarity=0.008 Sum_probs=70.2
Q ss_pred HH-HHHHHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHh-CCccCCC----CC---chhHHHHHHHHHHH
Q 043019 19 WM-FNVVTSVGIIMVNKALMATYGFSFATTLTGLHFATTTMLTTFLRWL-GYIQTSH----LP---FSELVRFVVFANFS 89 (204)
Q Consensus 19 w~-~~~~~S~~~~~~NK~il~~~~f~~P~~Lt~~q~~~~~~~~~i~~~~-~~~~~~~----~~---~~~~~plsl~~~~~ 89 (204)
|. .|.+.+...++.-|....-.+|+ -.--....-+.+..++..+..+ .-.++++ ++ +..++.-|++-.+.
T Consensus 159 Wm~~NclssaafVL~mrkri~ltNf~-d~dtmfYnNllslPiL~~~s~~~edws~~n~annl~~d~l~am~ISgl~svgi 237 (309)
T COG5070 159 WMFTNCLSSAAFVLIMRKRIKLTNFK-DFDTMFYNNLLSLPILLSFSFLFEDWSPGNLANNLSVDSLMAMFISGLCSVGI 237 (309)
T ss_pred EEehhhHhHHHHHHHHHHhhcccccc-hhhHHHHhhhHHHHHHHHHHHHhccCCcchhhcCCChHHHHHHHHHHHHHhhh
Confidence 55 47777777777665555433443 1222334444444444443332 1111221 21 23455566777777
Q ss_pred HHHhhhhhccchHHHHHHHhhhhhHHHHHHHHHhcceecCcchhhh
Q 043019 90 IVGMNVSLMWNSVGFYQIAKLSMIPVSCFLEVVLDKVRYSRDTKLS 135 (204)
Q Consensus 90 i~~~n~sl~~~svs~~qi~K~~~pv~~~l~~~~~~~~~~s~~~~~s 135 (204)
..++-++.+..|-..|.++-+..-....+.+.+++++..+.....+
T Consensus 238 Sy~saWcvrVtSSTtySMvGALNKlp~alaGlvffdap~nf~si~s 283 (309)
T COG5070 238 SYCSAWCVRVTSSTTYSMVGALNKLPIALAGLVFFDAPVNFLSIFS 283 (309)
T ss_pred hhccceeEeehhhhHHHHHHHhhhChHHHhhhhhcCCchhHHHHHH
Confidence 7888889999999999999988888888888888777765555443
No 76
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=42.62 E-value=2e+02 Score=23.95 Aligned_cols=113 Identities=12% Similarity=-0.001 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHH-Hh-CCccCC------CCCchhHHHHHHHHHHHHHHh
Q 043019 22 NVVTSVGIIMVNKALMATYGFSFATTLTGLHFATTTMLTTFLR-WL-GYIQTS------HLPFSELVRFVVFANFSIVGM 93 (204)
Q Consensus 22 ~~~~S~~~~~~NK~il~~~~f~~P~~Lt~~q~~~~~~~~~i~~-~~-~~~~~~------~~~~~~~~plsl~~~~~i~~~ 93 (204)
...+|..-..++++++.+.+ -|...--.|+-...+...... .. +..+.. ..+...+.++ +..+.+=..-
T Consensus 122 ~~~~S~~agVy~E~~lK~~~--~s~~~~N~qL~~~gi~~~~~~~~~~~~~~~~~~g~f~G~~~~~~~~i-~~~a~gGllv 198 (244)
T PF04142_consen 122 AAFLSGFAGVYFEKLLKRSN--VSLWIQNMQLYLFGILFNLLALLLSDGSAISESGFFHGYSWWVWIVI-FLQAIGGLLV 198 (244)
T ss_pred HHHHHHHHHHHHHHHhcccc--hhHHHHHHHHHHHHHHHHHHHHhcccccccccCCchhhcchHHHHHH-HHHHHhhHHH
Confidence 44555556667777777655 366677777666555544432 12 111111 1223334333 3444444455
Q ss_pred hhhhccchHHHHHHHhhhhhHHHHHHHHHhcceecCcchhhhhh
Q 043019 94 NVSLMWNSVGFYQIAKLSMIPVSCFLEVVLDKVRYSRDTKLSIL 137 (204)
Q Consensus 94 n~sl~~~svs~~qi~K~~~pv~~~l~~~~~~~~~~s~~~~~sl~ 137 (204)
..-+||.+-=.-...-+.+.+.+.++++.+++.++|..-.++..
T Consensus 199 a~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~~f~lg~~ 242 (244)
T PF04142_consen 199 AFVLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPSLSFLLGAA 242 (244)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHhhhee
Confidence 56788887778888889999999999999999999987766543
No 77
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=36.83 E-value=1.2e+02 Score=26.43 Aligned_cols=99 Identities=13% Similarity=0.070 Sum_probs=63.9
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHhCCccCCC--CCchhHHHHHHHHHHHHHHhhhhhccchHHHHHHHhhhhhHHHHHHH
Q 043019 43 SFATTLTGLHFATTTMLTTFLRWLGYIQTSH--LPFSELVRFVVFANFSIVGMNVSLMWNSVGFYQIAKLSMIPVSCFLE 120 (204)
Q Consensus 43 ~~P~~Lt~~q~~~~~~~~~i~~~~~~~~~~~--~~~~~~~plsl~~~~~i~~~n~sl~~~svs~~qi~K~~~pv~~~l~~ 120 (204)
+|-+.++-+.......-..++...|..+.++ .+|.-..-+|+.-.+.-++-..+++.--.+=-.++|.+-.++..+.+
T Consensus 218 h~~msvsyf~~i~lV~s~I~~~~ig~~~lP~cgkdr~l~~~lGvfgfigQIllTm~lQiErAGpvaim~~~dvvfAf~wq 297 (346)
T KOG4510|consen 218 HAIMSVSYFSLITLVVSLIGCASIGAVQLPHCGKDRWLFVNLGVFGFIGQILLTMGLQIERAGPVAIMTYTDVVFAFFWQ 297 (346)
T ss_pred cEEEEehHHHHHHHHHHHHHHhhccceecCccccceEEEEEehhhhhHHHHHHHHHhhhhccCCeehhhHHHHHHHHHHH
Confidence 3334444333333322233344455443332 23444556777777777777888876655555678899999999999
Q ss_pred HHhcceecCcchhhhhhhhhh
Q 043019 121 VVLDKVRYSRDTKLSILLVLF 141 (204)
Q Consensus 121 ~~~~~~~~s~~~~~sl~~i~~ 141 (204)
.+++++.+++..+...+.++.
T Consensus 298 v~ff~~~Pt~ws~~Ga~~vvs 318 (346)
T KOG4510|consen 298 VLFFGHWPTIWSWVGAVMVVS 318 (346)
T ss_pred HHHhcCCChHHHhhceeeeeh
Confidence 999999999999877665553
No 78
>COG3274 Predicted O-acyltransferase [General function prediction only]
Probab=34.44 E-value=40 Score=29.69 Aligned_cols=27 Identities=4% Similarity=-0.075 Sum_probs=23.7
Q ss_pred HHHHHHhhhhhHHHHHHHHHhcceecC
Q 043019 103 GFYQIAKLSMIPVSCFLEVVLDKVRYS 129 (204)
Q Consensus 103 s~~qi~K~~~pv~~~l~~~~~~~~~~s 129 (204)
-.++..|.+.|+|.++-++++++||-.
T Consensus 45 vlns~sr~aVPLFfmISGyL~~~e~s~ 71 (332)
T COG3274 45 VLNSASRVAVPLFFMISGYLFFGERSA 71 (332)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 357889999999999999999999753
No 79
>PRK15075 citrate-proton symporter; Provisional
Probab=31.39 E-value=2.9e+02 Score=24.31 Aligned_cols=42 Identities=19% Similarity=0.118 Sum_probs=23.6
Q ss_pred CCCccccccccchh--H---HHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 043019 1 MSSTTKAADRKAAT--D---VAAWMFNVVTSVGIIMVNKALMATYGF 42 (204)
Q Consensus 1 ~~~~~~~~~~~~~~--~---~~~w~~~~~~S~~~~~~NK~il~~~~f 42 (204)
||.|||+|++..-. . ...|.+.+.--..+.+....+.++++.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~~~~ 47 (434)
T PRK15075 1 MSTMTPAASRESKARAILRVTSGNFLEMFDFFLFGFYATAIAKTFFP 47 (434)
T ss_pred CCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 79999998764332 2 223334444444455556666666544
No 80
>COG2510 Predicted membrane protein [Function unknown]
Probab=29.10 E-value=1.9e+02 Score=22.22 Aligned_cols=45 Identities=11% Similarity=0.129 Sum_probs=36.5
Q ss_pred HHHHHHHHHHhhhhhccchHHHHHHHhhhhhHHHHHHHHHhccee
Q 043019 83 VVFANFSIVGMNVSLMWNSVGFYQIAKLSMIPVSCFLEVVLDKVR 127 (204)
Q Consensus 83 sl~~~~~i~~~n~sl~~~svs~~qi~K~~~pv~~~l~~~~~~~~~ 127 (204)
+++....-+++-.+++.++-.+.+.+|+......+..-.+..|+.
T Consensus 12 A~fa~L~~iF~KIGl~~vdp~~At~IRtiVi~~~l~~v~~~~g~~ 56 (140)
T COG2510 12 ALFAGLTPIFAKIGLEGVDPDFATTIRTIVILIFLLIVLLVTGNW 56 (140)
T ss_pred HHHHHHHHHHHHHhccccCccHHHHHHHHHHHHHHHHHHHhcCce
Confidence 345557888999999999999999999988887777766666664
No 81
>COG3949 Uncharacterized membrane protein [Function unknown]
Probab=27.15 E-value=1.6e+02 Score=26.23 Aligned_cols=55 Identities=13% Similarity=-0.026 Sum_probs=35.2
Q ss_pred CCCchhHHHHHHHHHHHHHHhhhhh-------ccchHHHHHHHhhhhhHHHHHHHHHhccee
Q 043019 73 HLPFSELVRFVVFANFSIVGMNVSL-------MWNSVGFYQIAKLSMIPVSCFLEVVLDKVR 127 (204)
Q Consensus 73 ~~~~~~~~plsl~~~~~i~~~n~sl-------~~~svs~~qi~K~~~pv~~~l~~~~~~~~~ 127 (204)
+...+.-+-=|+....-....|.+| ..-++|+++++|...|..-.+...++..+-
T Consensus 209 ~~~~~g~l~gglIlgvl~~l~nlsLi~~~~~v~~~dIP~l~i~~~~~~~i~lvm~vIi~~~I 270 (349)
T COG3949 209 KVSGIGGLIGGLILGVLLFLINLSLIALYDKVVNYDIPLLTIAKNFSPLIGLVMSVIIWLEI 270 (349)
T ss_pred chhhhhhhhhhHHHHHHHHHHHHHHHhhcchhhccCCcHHHHHHhccHHHHHHHHHHHHHHH
Confidence 3333333333344444444556665 455899999999999988877777766543
No 82
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=25.31 E-value=1.3e+02 Score=26.30 Aligned_cols=30 Identities=10% Similarity=0.155 Sum_probs=16.3
Q ss_pred HHHHHHhh--hcCCCchhhHHHHHHHHHHHHHH
Q 043019 31 MVNKALMA--TYGFSFATTLTGLHFATTTMLTT 61 (204)
Q Consensus 31 ~~NK~il~--~~~f~~P~~Lt~~q~~~~~~~~~ 61 (204)
.+-|.++. ..+.+ ++.+...+--++.+.+.
T Consensus 180 I~~~~ll~~~~~~~~-~~~ll~y~ap~s~~~Ll 211 (316)
T KOG1441|consen 180 ILSKKLLTSKGESLN-SMNLLYYTAPISLIFLL 211 (316)
T ss_pred HHHHHhhhccccccC-chHHHHHhhhHHHHHHh
Confidence 34444553 34555 66666665556665555
No 83
>COG3296 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.91 E-value=3.2e+02 Score=20.91 Aligned_cols=66 Identities=18% Similarity=0.177 Sum_probs=42.6
Q ss_pred hHHHHHHHhhhhhHHHHHH-HHHhcceecCcchhhhhhhhhhhheeeeeccccccHHHHHHHHHHHH
Q 043019 101 SVGFYQIAKLSMIPVSCFL-EVVLDKVRYSRDTKLSILLVLFGVGVCTVTDVSVNAKGFIAAFVAVW 166 (204)
Q Consensus 101 svs~~qi~K~~~pv~~~l~-~~~~~~~~~s~~~~~sl~~i~~Gv~~~~~~d~~~~~~G~~~~l~s~~ 166 (204)
|+-..++-|-.+|..-.-. |++=+.-..+.....+.+++.+|+.++.-.....+..|++..+++.+
T Consensus 41 PlivW~~kK~~sp~vD~qGKe~lNFqIs~ti~~ivs~vLil~g~~la~t~~~~i~~ig~~l~li~il 107 (143)
T COG3296 41 PLIVWLLKKDSSPFVDAQGKEALNFQISYTIYSIVSFVLILAGVFLAATDISFIIIIGFFLTLIGIL 107 (143)
T ss_pred HHHHHHHHhccchhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHH
Confidence 7777777776666554432 22222233445566889999999998877666667777776655555
Done!