Query 043019
Match_columns 204
No_of_seqs 131 out of 1066
Neff 7.6
Searched_HMMs 29240
Date Mon Mar 25 21:07:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043019.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043019hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3b5d_A Multidrug transporter E 98.0 2.3E-05 7.7E-10 56.9 7.4 68 83-150 37-105 (110)
2 2i68_A Protein EMRE; transmemb 97.8 3.1E-05 1.1E-09 58.5 5.6 68 82-149 36-104 (137)
3 3l1l_A Arginine/agmatine antip 7.8 8.7E+02 0.03 19.8 6.6 13 155-167 411-423 (445)
4 3gia_A Uncharacterized protein 2.4 2.2E+03 0.077 17.1 6.6 18 120-137 361-378 (444)
5 4dve_A Biotin transporter BIOY 2.2 1.6E+03 0.055 16.9 3.6 83 76-163 17-107 (198)
6 1jr5_A 10 kDa anti-sigma facto 2.2 8E+02 0.027 16.4 1.5 35 77-113 29-63 (90)
7 1hek_A GAG polyprotein, core p 2.2 1.3E+03 0.043 16.0 2.6 19 64-82 48-66 (131)
8 1oks_A RNA polymerase alpha su 2.2 7.7E+02 0.026 14.8 1.3 9 103-111 39-47 (56)
9 1l4t_A Gastrin/cholecystokinin 2.2 8.3E+02 0.028 12.7 1.2 11 97-107 17-27 (30)
10 1ifl_A Inovirus; helical virus 2.1 8.4E+02 0.029 14.6 1.3 25 149-173 18-42 (53)
No 1
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=97.97 E-value=2.3e-05 Score=56.88 Aligned_cols=68 Identities=13% Similarity=0.077 Sum_probs=60.9
Q ss_pred HHHHHHHHHHhhhhhccchHHHHHHH-hhhhhHHHHHHHHHhcceecCcchhhhhhhhhhhheeeeecc
Q 043019 83 VVFANFSIVGMNVSLMWNSVGFYQIA-KLSMIPVSCFLEVVLDKVRYSRDTKLSILLVLFGVGVCTVTD 150 (204)
Q Consensus 83 sl~~~~~i~~~n~sl~~~svs~~qi~-K~~~pv~~~l~~~~~~~~~~s~~~~~sl~~i~~Gv~~~~~~d 150 (204)
.+.+.....+-+.++++.|++....+ +...|+++.+.+++++||+.++.++..+.++++|+.+....+
T Consensus 37 ~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~ 105 (110)
T 3b5d_A 37 IICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (110)
T ss_pred HHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 34667778888899999999999888 999999999999999999999999999999999998765544
No 2
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=97.79 E-value=3.1e-05 Score=58.46 Aligned_cols=68 Identities=13% Similarity=0.064 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHhhhhhccchHHHHHHH-hhhhhHHHHHHHHHhcceecCcchhhhhhhhhhhheeeeec
Q 043019 82 FVVFANFSIVGMNVSLMWNSVGFYQIA-KLSMIPVSCFLEVVLDKVRYSRDTKLSILLVLFGVGVCTVT 149 (204)
Q Consensus 82 lsl~~~~~i~~~n~sl~~~svs~~qi~-K~~~pv~~~l~~~~~~~~~~s~~~~~sl~~i~~Gv~~~~~~ 149 (204)
..+++.+...+-+.++++.|++....+ ....|++++++++++++|+.++.++.++.++++|+.+....
T Consensus 36 ~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~ 104 (137)
T 2i68_A 36 TIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL 104 (137)
T ss_dssp HHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 334677788899999999999987777 99999999999999999999999999999999999876543
No 3
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=7.85 E-value=8.7e+02 Score=19.78 Aligned_cols=13 Identities=15% Similarity=0.128 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHH
Q 043019 155 AKGFIAAFVAVWS 167 (204)
Q Consensus 155 ~~G~~~~l~s~~~ 167 (204)
..|..+.+.+...
T Consensus 411 ~~~~~~~~~g~~~ 423 (445)
T 3l1l_A 411 MWSFVTLMVITAM 423 (445)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4455544444433
No 4
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=2.35 E-value=2.2e+03 Score=17.09 Aligned_cols=18 Identities=6% Similarity=-0.027 Sum_probs=8.1
Q ss_pred HHHhcceecCcchhhhhh
Q 043019 120 EVVLDKVRYSRDTKLSIL 137 (204)
Q Consensus 120 ~~~~~~~~~s~~~~~sl~ 137 (204)
+.+.+++|.+...+...+
T Consensus 361 ~~~~~r~~~~~~~~~~~~ 378 (444)
T 3gia_A 361 SHYILIDEVGGRKEIVIF 378 (444)
T ss_dssp HHHHTHHHHCCCHHHHHH
T ss_pred HHHHhhhcCCCcchHHHH
Confidence 344445544444444433
No 5
>4dve_A Biotin transporter BIOY; ECF-transport, ligand-binding domain, biotin binding, membra transport protein; HET: BTN BNG; 2.09A {Lactococcus lactis subsp}
Probab=2.23 E-value=1.6e+03 Score=16.87 Aligned_cols=83 Identities=14% Similarity=0.074 Sum_probs=51.5
Q ss_pred chhHHHHHHHHHHHHHHhhhh---hccchHHHHHHHhhhhhHHHHHHHHHhcceecCcchhhhhhhhhhhheeeeecccc
Q 043019 76 FSELVRFVVFANFSIVGMNVS---LMWNSVGFYQIAKLSMIPVSCFLEVVLDKVRYSRDTKLSILLVLFGVGVCTVTDVS 152 (204)
Q Consensus 76 ~~~~~plsl~~~~~i~~~n~s---l~~~svs~~qi~K~~~pv~~~l~~~~~~~~~~s~~~~~sl~~i~~Gv~~~~~~d~~ 152 (204)
.|++...+++.+...+++..+ +-..|||+ ...+..+++.+.++..|+=.....+-+++-.+|.=+.+.+..-
T Consensus 17 ~r~l~~~alfaAliavla~i~~Ipip~~pVPi-----TlQtl~V~LaG~~LG~r~G~lsv~lYlllG~~GlPVFagg~gG 91 (198)
T 4dve_A 17 VKTLTYSAFMTAFIIILGFLPGIPIGFIPVPI-----ILQNMGIMMAGGLLGPKYGTISVGAFLALALIGLPVLTGGNGG 91 (198)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCCBCCSSSSCCB-----CSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCBTTTBCC
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCCCCcCc-----cHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHcCccccCCCCc
Confidence 477888888888877777653 34445553 4677888888888888876555555555556665544433211
Q ss_pred c-----cHHHHHHHHH
Q 043019 153 V-----NAKGFIAAFV 163 (204)
Q Consensus 153 ~-----~~~G~~~~l~ 163 (204)
. ...|+.++..
T Consensus 92 ~~~l~gPTgGYLiGF~ 107 (198)
T 4dve_A 92 AASFLGPSGGYRIAWL 107 (198)
T ss_dssp SGGGGSTTHHHHHHHH
T ss_pred hhHHhcchhHHHHHHH
Confidence 1 2456665543
No 6
>1jr5_A 10 kDa anti-sigma factor; all-alpha, helix-turn-helix, coiled-coil, transcription; NMR {Enterobacteria phage T4} SCOP: a.150.1.1 PDB: 1tkv_A 1tl6_A 1tlh_A
Probab=2.21 E-value=8e+02 Score=16.39 Aligned_cols=35 Identities=9% Similarity=0.036 Sum_probs=26.9
Q ss_pred hhHHHHHHHHHHHHHHhhhhhccchHHHHHHHhhhhh
Q 043019 77 SELVRFVVFANFSIVGMNVSLMWNSVGFYQIAKLSMI 113 (204)
Q Consensus 77 ~~~~plsl~~~~~i~~~n~sl~~~svs~~qi~K~~~p 113 (204)
.+-..++++.=+++ +.-+-.....+|.|+.|..++
T Consensus 29 ~q~~FIaFLNElG~--t~~G~~~t~~sfr~m~~~lt~ 63 (90)
T 1jr5_A 29 NRANFIAFLNEIGV--THEGRKLNQNSFRKIVSELTQ 63 (90)
T ss_dssp CHHHHHHHHHHHTC--CSSSSCCCSHHHHHHHHTCCH
T ss_pred hHHHHHHHHHHcCC--CCCcchhHHHHHHHHHHHCCH
Confidence 44556777776665 666888999999999998875
No 7
>1hek_A GAG polyprotein, core protein P15; viral protein, membrane-binding switching; 2.8A {Equine infectious anemia virus} SCOP: a.61.1.5
Probab=2.20 E-value=1.3e+03 Score=16.00 Aligned_cols=19 Identities=0% Similarity=0.251 Sum_probs=10.9
Q ss_pred HHhCCccCCCCCchhHHHH
Q 043019 64 RWLGYIQTSHLPFSELVRF 82 (204)
Q Consensus 64 ~~~~~~~~~~~~~~~~~pl 82 (204)
.-.+..+.++..+|.++|+
T Consensus 48 HdTn~~KeKDWqLrdviPL 66 (131)
T 1hek_A 48 HDTNFVKEKDWQLRDVIPL 66 (131)
T ss_dssp TTCCTTTSSCCCHHHHHHH
T ss_pred ccccccccccchHHHhHHH
Confidence 3345555665556666664
No 8
>1oks_A RNA polymerase alpha subunit; transferase, RNA-directed RNA polymerase, nucleocapsid, phosphorylation.; HET: NHE; 1.8A {Measles virus} SCOP: a.8.5.1 PDB: 1t6o_A 2k9d_A
Probab=2.20 E-value=7.7e+02 Score=14.81 Aligned_cols=9 Identities=22% Similarity=0.080 Sum_probs=6.2
Q ss_pred HHHHHHhhh
Q 043019 103 GFYQIAKLS 111 (204)
Q Consensus 103 s~~qi~K~~ 111 (204)
.|||++|..
T Consensus 39 eF~qMl~~I 47 (56)
T 1oks_A 39 KFHQMLVKI 47 (56)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 578887753
No 9
>1l4t_A Gastrin/cholecystokinin type B receptor; hormone/growth factor receptor; NMR {Synthetic} SCOP: j.82.1.1
Probab=2.17 E-value=8.3e+02 Score=12.73 Aligned_cols=11 Identities=18% Similarity=0.380 Sum_probs=5.3
Q ss_pred hccchHHHHHH
Q 043019 97 LMWNSVGFYQI 107 (204)
Q Consensus 97 l~~~svs~~qi 107 (204)
+.+.+++|.|+
T Consensus 17 l~~~~IsFihL 27 (30)
T 1l4t_A 17 LSGAPISFIHL 27 (30)
T ss_dssp HHSSCHHHHHH
T ss_pred hccccchhhhh
Confidence 34445555544
No 10
>1ifl_A Inovirus; helical virus; 5.00A {Enterobacteria phage ike} SCOP: h.1.4.1
Probab=2.09 E-value=8.4e+02 Score=14.58 Aligned_cols=25 Identities=8% Similarity=-0.114 Sum_probs=18.0
Q ss_pred ccccccHHHHHHHHHHHHHHHHHHH
Q 043019 149 TDVSVNAKGFIAAFVAVWSTAMQQY 173 (204)
Q Consensus 149 ~d~~~~~~G~~~~l~s~~~~a~~~i 173 (204)
++...+..|..|.+.-.+.-|.-.|
T Consensus 18 ~~qat~~ig~~W~vvv~vv~a~~gI 42 (53)
T 1ifl_A 18 KTQAIDLISQTWPVVTTVVVAGLVI 42 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhhheeeechhhh
Confidence 3344578899999888887776555
Done!